Category Archives: Assemblies

The ALLPATHS-LG assembly of Mouse 129 (Mus musculus strain 129Sv/Jae) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 15.3 6.9 AHBB00000000 mm129svJae1.0 Please read … Continue reading →

The ALLPATHS-LG assembly of Golden Hamster (Mesocricetus auratus) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 22.5 12.8 APMT00000000 MesAur1.0 Please read our release terms … Continue reading →

The ALLPATHS-LG assembly of Weddell Seal (Leptonychotes weddellii) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 23.7 0.9 APMU00000000 LepWed1.0 Please read our release terms … Continue reading →

The ALLPATHS-LG assembly of Prairie Vole (Microtus ochrogaster) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 21.2 61.8 AHZW00000000 MicOch1.0 Please read our release terms and … Continue reading →

The ALLPATHS-LG assembly of the Lesser Hedgehog Tenrec (Echinops telfairi) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 20.4 45.8 AAIY00000000 EchTel2.0 Please read … Continue reading →

The ALLPATHS-LG assembly of Big Brown Bat (Eptesicus fuscus) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 21.4 13.5 ALEH00000000 EptFus1.0 Please read our … Continue reading →

The ALLPATHS-LG assembly of the Cape Elephant Shrew (Elephantulus edwardii) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 24.2 15.0 AMGZ00000000 EleEdw1.0 Please read … Continue reading →

The ALLPATHS-LG assembly of Aardvark (Orycteropus afer afer) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 17.7 7.9 ALYB00000000 OryAfe1.0 Please read our release terms … Continue reading →

The ALLPATHS-LG assembly of the European Hedgehog (Erinaceus europaeus) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 21.4 3.3 AMDU00000000 EriEur2.0 Please read our … Continue reading →

The ALLPATHS-LG assembly of the Cape Golden Mole (Chrysochloris asiatica) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 19.6 13.5 AMDV00000000 ChrAsi1.0 Please read our … Continue reading →