Monthly Archives: May 2011

Broad Illumina Boot Camp

People generating data for ALLPATHS-LG may want to check out the Broad/Illumina Genome Analyzer Boot Camp, which has presentation materials designed to help you get the most out of the Ilumina sequencing system.

Posted in Misc | Leave a comment

New feature! Gap patching using long reads

For bacterial-sized genomes, ALLPATHS-LG now accepts an additional data type as input: long reads (for example from Pacific Biosciences), and uses these reads to patch gaps in scaffolds obtained from short reads.  We recommend using high coverage (e.g. 25-100x) by … Continue reading

Posted in Release | Leave a comment