Monthly Archives: August 2011

Accuracy of ALLPATHS-LG on small genomes further improved

As of revision 38293, we’ve made a series of accuracy improvements to ALLPATHS-LG. Some of these improvements are specific to hybrid (Illumina + PacBio) datasets. Others are not, but are currently invoked only if the assembly size is under 10 … Continue reading

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ALLPATHS-LG hybrid assembly accuracy improved

As of revision 38088, for ALLPATHS-LG assembly of ‘hybrid’ Illumina/PacBio datasets, we’ve added a new step that uses the Illumina data to ‘clean’ PacBio patches. This step removes nearly all of the errors introduced by the patches.

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