Monthly Archives: January 2012

Male Ferret assembly released

Posted on January 23, 2012 by AllpathsIain

The ALLPATHS-LG assembly of male Ferret (Mustela putorius furo) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 66.7 9.6 AGTQ00000000 MusPutFurMale1.0 Please read our … Continue reading →

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Guide to using Broad genome assemblies in your research

Posted on January 10, 2012 by AllpathsIain

The ALLPATHS-LG genome assemblies produced here at the Broad Institute are available for download via the Broad FTP site and NCBI. However, some restrictions on their use may apply, and it is therefore important that you follow the guidelines given … Continue reading →

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Bye Bye Boost

Posted on January 9, 2012 by AllpathsIain

We try very hard to make sure that ALLPATHS-LG is easy to install and use. Over the last year we have noticed that the dependency on the Boost library was the number one cause of installation problems. So we have re-engineered … Continue reading →

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Four Cichlid assemblies released

Posted on January 3, 2012 by AllpathsIain

The ALLPATHS-LG assemblies of four Cichlid fish (Pundamilia nyererei, Neolamprologus brichardi, Haplochromis burtoni and Maylandia zebra) are now available via NCBI and the Broad Institute ftp site. The basic statistics and locations are given below: Species Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # … Continue reading →

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