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Monthly Archives: September 2012
Easy stand alone Error Correction
The ALLPATHS-LG fragment read error correction modules are now available for stand alone use outside the full assembly pipeline. You can now easily error correct your own data using our method without running an assembly. Simply supply a Fastq file … Continue reading
Posted in News, Release
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European Hedgehog assembly released
The ALLPATHS-LG assembly of the European Hedgehog (Erinaceus europaeus) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 21.4 3.3 AMDU00000000 EriEur2.0 Please read our … Continue reading
Posted in Assemblies
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Cape Golden Mole assembly released
The ALLPATHS-LG assembly of the Cape Golden Mole (Chrysochloris asiatica) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 19.6 13.5 AMDV00000000 ChrAsi1.0 Please read our … Continue reading
Posted in Assemblies
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American Pika assembly released
The ALLPATHS-LG assembly of the American Pika (Ochotona princeps) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 42.3 26.9 ALIT00000000 OchPri3.0 Please read our … Continue reading
Posted in Assemblies
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Common Shrew assembly released
The ALLPATHS-LG assembly of the Common Shrew (Sorex araneus) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 22.6 22.8 AALT00000000 SorAra2.0 Please read our … Continue reading
Posted in Assemblies
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