Monthly Archives: October 2012

Stand alone Error Correction now supports paired reads

Posted on October 30, 2012 by AllpathsIain

The error correction script now supports paired end reads. Simply supply two Fastq files (one for each read direction) and the corrected reads will be returned in the same format. In addition, you may also now run the fragment filling code … Continue reading →

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Cape Elephant Shrew assembly released

Posted on October 15, 2012 by AllpathsIain

The ALLPATHS-LG assembly of the Cape Elephant Shrew (Elephantulus edwardii) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 24.2 15.0 AMGZ00000000 EleEdw1.0 Please read … Continue reading →

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Aardvark assembly released

Posted on October 2, 2012 by AllpathsIain

The ALLPATHS-LG assembly of Aardvark (Orycteropus afer afer) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 17.7 7.9 ALYB00000000 OryAfe1.0 Please read our release terms … Continue reading →

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