Monthly Archives: December 2012

FASTG specification released

Posted on December 17, 2012 by AllpathsIain

The FASTG Format Specification Working Group is pleased to announce version 1.0 of the FASTG specification FASTG is a format for faithfully representing genome assemblies in the face of allelic polymorphism and assembly uncertainty. Currently genome assemblies are represented linearly, … Continue reading →

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Prairie Vole assembly released

Posted on December 12, 2012 by AllpathsIain

The ALLPATHS-LG assembly of Prairie Vole (Microtus ochrogaster) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 21.2 61.8 AHZW00000000 MicOch1.0 Please read our release terms and … Continue reading →

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Lesser Hedgehog Tenrec assembly released

Posted on December 3, 2012 by AllpathsIain

The ALLPATHS-LG assembly of the Lesser Hedgehog Tenrec (Echinops telfairi) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 20.4 45.8 AAIY00000000 EchTel2.0 Please read … Continue reading →

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