The ALLPATHS-LG fragment read error correction modules are now available for stand alone use outside the full assembly pipeline. You can now easily error correct your own data using our method without running an assembly. Simply supply a Fastq file and the corrected reads will be returned in the same format. For more details please see the script:
ErrorCorrectReads.pl
Note that you will require a complete and working ALLPATHS-LG installation (r43019+) in order to run this script.