Chr	hg18_Start	hg18_End	hg19_Start	hg19_End	Strand	Height	Width	Starts	Family	Samples	Height_2	Width_2	Repeatmasker Overlaps	Known_non-reference_Elements	UCSC_Genes_Overlaps	UCSC_Exons_Overlaps	Filled_Primer	Filler_Primer_Sequence	Empty_Primer	Empty_Primer_Sequence
chr1	49930858	49931012	50158271	50158425	-	24	154	3	noL1	COLO1T	0	0	AluY		AGBL4		c1p49930935FS	ATGAGAAAACTGAGGTACCAAGAG	c1p49930935ES	ATAAACTCCAGTGTTCAGAAATCC
chr1	71969022	71969135	72196434	72196547	+	37	113	4	noL1	COLO1T	0	0			NEGR1		c1p71969078FS	ACCTTCTGGACCTAGAATATGTTG	c1p71969078ES	GTCTACATGTCTAACGTGCAATTC
chr1	86031536	86031917	86258948	86259329	-	313	381	4	noL1	COLO1T	0	0	GA-rich		COL24A1		c1p86031726FS	CTCAAGACAGACTAAAGCCATTTC	c1p86031726ES	TTTTGTTTTTAAAATTTGCCTTTC
chr1	88350296	88350429	88577708	88577841	+	299	133	3	noL1	COLO1T	0	0					c1p88350362FS	ATTACAGTTGACATTTCTGAACCC	c1p88350362ES	ACATCTGGATCTCTTACACCTACC
chr1	104382055	104382423	104580532	104580900	-	11	368	2	noL1	COLO1T	0	0					c1p104382239FS	AAACAGTCCACATATTGGCTTATC	c1p104382239ES	TCAGACTTCTAGCACAAAGAACAG
chr1	237210995	237211173	239144372	239144550	-	232	178	4	noL1	COLO1T	0	0					c1p237211084FS	TTAATCAATGCAGTTTAAATGTGG	c1p237211084ES	AGCTGATACCTCTAATTGTGGAAC
chr10	45357009	45357183	46037003	46037177	+	11	174	2	L1PA4	COLO1T	0	0	HAL1,L1PA4		8-Mar		c10p45357096FS	TTAGAACTATGGTTAGGAGCTTGG	c10p45357096ES	CAAATGTCCAACAATGATAGACTG
chr10	56731285	56731519	57061279	57061513	-	508	234	4	noL1	COLO1T	0	0	L1MD1		PCDH15		c10p56731402FS	TGTATGTTTAATTTGGCAACAAAC	c10p56731402ES	TAACATGTATATGGAAAGGCAATG
chr10	113073553	113073840	113083563	113083850	+	42	287	4	noL1	COLO1T	0	0	L1PB4				c10p113073696FS	ATAATTTTATTCCACTGTTCTCCG	c10p113073696ES	AGACAAACACTAAGGGAATTCATC
chr11	20389062	20389171	20432486	20432595	-	528	109	8	noL1	COLO1T	0	0			PRMT3		c11p20389116FS	AAAGTATATTTGTCACTGGTGCAG	c11p20389116ES	AGCAGGAAATCTTACAAAAATGAC
chr11	36145548	36145749	36188972	36189173	+	260	201	4	noL1	COLO1T	0	0	MLT1C		LDLRAD3		c11p36145648FS	CACAGTGACTCTGAACTTCTCTTC	c11p36145648ES	TTATTTTAAGGAATTGGTTCATGC
chr11	87319064	87319277	87641416	87641629	-	114	213	3	noL1	COLO1T	0	0	L1PA4				c11p87319170FS	GAACTAGTTTACAGTCCCACCAAC	c11p87319170ES	TCAAACTATGCTACAAGGCTACAG
chr11	90728428	90728622	91088780	91088974	+	30	194	3	noL1	COLO1T	0	0	L1MC5				c11p90728525FS	CCTACCTTGTTTTTGTTGAAATG	c11p90728525ES	TTCTTCCTCTGAAAATTCTCATTC
chr11	114813334	114813762	115308124	115308552	+	2960	428	20	noL1	COLO1T	0	0			CADM1		c11p114813548FS	AATAGTAATTTTGTTATGGGCCAG	c11p114813548ES	TTTTTCTTTTCCTGTTTTAAGGAG
chr11	122379335	122379821	122874125	122874611	+	25	486	4	noL1	COLO1T	0	0	Charlie18a,L2a				c11p122379578FS	TTTTCAAAACCTCCTACCATTTAC	c11p122379578ES	ATTACTCTGAGTTGTCCAATGAGC
chr11	131716549	131716910	132211339	132211700	+	17	361	4	noL1	COLO1T	0	0	MIR3				c11p131716729FS	ATCTCCTATATAGCTCCACAAAGC	c11p131716729ES	CAACTGTAAGAGTGAGACAGATGC
chr12	81253056	81253211	82728925	82729080	+	173	155	5	noL1	COLO1T	0	0					c12p81253133FS	CTGTAGTCCTAGCTACTCAGGAGG	c12p81253133ES	TTAATTAAATACCAAGTCCCATCC
chr12	83236482	83236773	84712351	84712642	+	35	291	3	noL1	COLO1T	0	0	L3				c12p83236627FS	GCCTTCATCATAAAATCTTTGTTC	c12p83236627ES	GTAAATTGTAGATTGCTTGAAGGG
chr12	93551841	93552334	95027710	95028203	-	20	493	2	noL1	COLO1T	0	0	AluSx1		TMCC3		c12p93552087FS	TTCGCTGAATGAGTTACTAACAAG	c12p93552087ES	TCAACTATTGAGAAGTTTGACTCG
chr12	128797923	128798074	130231970	130232121	-	229	151	7	noL1	COLO1T	0	0	(CA)n		TMEM132D		c12p128797998FS	AATCGTTAAGAGGTCAATCAGTTC	c12p128797998ES	GAGTGCTAGAAAGAAGAACAAAGC
chr13	54562024	54562166	55664023	55664165	-	11	142	4	noL1	COLO1T	0	0	AluY,L1MEc				c13p54562095FS	GAGTGGTGCTATCTCTACTCACTG	c13p54562095ES	GAAAAACTCTGAGAACAAGAAATG
chr13	81426773	81426880	82528772	82528879	+	788	107	4	noL1	COLO1T	0	0	MLT1B				c13p81426826FS	ATAATAATCTTCATTCCATCACGG	c13p81426826ES	ATTCATCAAAAACTAGAAGCAACC
chr14	29503839	29503992	30434088	30434241	+	16	153	2	noL1	COLO1T	0	0					c14p29503915FS	GATAATGAACAAAGAAAATCTGCC	c14p29503915ES	AAAAATCAATTTCCTTCTCATCTG
chr15	98756667	98756880	100939144	100939357	-	18	213	2	noL1	COLO1T	0	0	L1ME3A,AluY				c15p98756773FS	TCCATTTCTTCTTTGATCTACAGG	c15p98756773ES	TGGACAAATATATACCATGCAAAC
chr16	27008051	27008277	27100550	27100776	+	2793	226	11	noL1	COLO1T	0	0	L1MDa				c16p27008164FS	TTTCTATTGATGCTGTAGGTGATG	c16p27008164ES	AGAGATGAGGTTTCTCCATGTTAG
chr16	31485459	31485608	31577958	31578107	-	109	149	5	noL1	COLO1T	0	0					c16p31485533FS	ACAGCAATAGAGTCCAAATTGAAG	c16p31485533ES	CCATCAGTTAGGAAAATTAAATGC
chr16	47898249	47898400	49340748	49340899	-	672	151	7	noL1	COLO1T	0	0					c16p47898324FS	AGTCAGCTCTGGACTACTTTTGAC	c16p47898324ES	GAGACTTGTATTTGTCACCATGAG
chr16	63628594	63628702	65071093	65071201	+	10	108	2	noL1	COLO1T	0	0	MIRb		CDH11		c16p63628648FS	TCCAATAATCAGTGTCTACACCAG	c16p63628648ES	ATAGGTAATTAGAGTCCAGCTCCC
chr17	22176915	22177398	22252788	22253271	-	16	483	2	noL1	COLO1T	0	0	ALR/Alpha	LINE:Iskow			c17p22177156FS	ACAGAGTTGAAATTTCCTTTTGAG	c17p22177156ES	GTTTACTTAGCTGAAATTATCCCG
chr18	4309912	4310080	4319912	4320080	-	466	168	5	noL1	COLO1T	0	0					c18p4309996FS	ATAAAAATTGACAAGAACAGAGGC	c18p4309996ES	GGCTGTGTTAAAGAGAACAAGAG
chr18	8026042	8026301	8036042	8036301	+	40	259	5	noL1	COLO1T	0	0	L3		PTPRM		c18p8026171FS	TTAATCTGTGTATAGCTGAGTGCC	c18p8026171ES	AAAGAAATAAACACAAACTGGAGG
chr2	594906	595302	604906	605302	-	14	396	2	noL1	COLO1T	0	0	(CA)n				c2p595104FS	TGTGCACACAGATCCTAAACTG	c2p595104ES	GTCTGATGTGTGTGTGGAGTAGAG
chr2	3623013	3623152	3645138	3645277	-	11	139	2	noL1	COLO1T	0	0			COLEC11		c2p3623082FS	GTCAGTGAATGAATGGAGTGAAG	c2p3623082ES	TAAAAATACAAAAATTAGCTGGGC
chr2	41209434	41209652	41355930	41356148	+	10	218	2	noL1	COLO1T	0	0	AluJb				c2p41209543FS	ATTTTGGGTCTTACATAACTGTGG	c2p41209543ES	AAACTCAAAATGTACAGAACCGTC
chr2	89681919	89682153	90044614	90044848	-	332	234	6	noL1	COLO1T	0	0			abParts		c2p89682036FS	TTATAAGGTTTCTAACCGGTTCTC	c2p89682036ES	ACTATCCTTTTCTGTCAGCAAGAC
chr2	124823666	124823775	125107196	125107305	-	117	109	3	noL1	COLO1T	0	0	MARNA		CNTNAP5		c2p124823720FS	GTACTTTCACAAAACCTGGATAGC	c2p124823720ES	ATCACGAGGTTAAGAGATCAAGAC
chr2	161181186	161181434	161472940	161473188	+	88	248	7	noL1	COLO1T	0	0	L1ME3A				c2p161181310FS	TGGGCTTTATAGTTACCATTTTTC	c2p161181310ES	TATAGATTCAGTTAGCACCAAAGC
chr2	165981005	165981252	166272759	166273006	-	314	247	6	noL1	COLO1T	0	0	L1PB1				c2p165981128FS	TTATCAGATCTAGGAGCTTTTTGG	c2p165981128ES	ATAAAAATCACTTCATTCTGGCTC
chr20	7689876	7689983	7741876	7741983	+	880	107	6	noL1	COLO1T	0	0					c20p7689929FS	TAATTAAGAATATACTGCGCCTCC	c20p7689929ES	CAATCCAGAGTTTCATTCCTTATC
chr3	1872831	1872981	1897831	1897981	-	1831	150	9	noL1	COLO1T	0	0					c3p1872906FS	AAATTTTCCAATAAGCACAAATTC	c3p1872906ES	ATCTTTCCACTGAATCTACAAACC
chr3	18027206	18027728	18052202	18052724	+	34	522	2	noL1	COLO1T	0	0	T-rich,MIRb		BC035826		c3p18027467FS	GCAGATACTTAAAGAGCCAGATTC	c3p18027467ES	AGGAGAAACAAGTAATGGAGAGAG
chr3	19535920	19536042	19560916	19561038	+	17	122	3	L1PA7	COLO1T	0	0			KCNH8		c3p19535981FS	TAACAAACTGTGTGGATTTACAGC	c3p19535981ES	ACTCAAAATTATTCAACCAAGGAG
chr3	31020370	31020650	31045366	31045646	+	2028	280	15	noL1	COLO1T	0	0					c3p31020510FS	ACTGCTATGTCAAATTCCTAGTCC	c3p31020510ES	TTCTCAGGAATATCAGTCTTTTCC
chr3	40165578	40165970	40190574	40190966	-	449	392	5	noL1	COLO1T	0	0	MSTB		slac2-c,MYRIP		c3p40165774FS	GAGAGCTCCAAGTTTGTGAGTTAG	c3p40165774ES	CATGTACTTCAGAACAGATGGAAG
chr3	51314592	51314692	51339552	51339652	-	684	100	3	noL1	COLO1T	0	0	L1PA10		DOCK3		c3p51314642FS	ATTATTTACCCAGGAGTCACTCAG	c3p51314642ES	CCAATGACACTATGAAGCAACTAC
chr3	77663684	77663822	77580994	77581132	-	2183	138	5	noL1	COLO1T	0	0			ROBO2		c3p77663753FS	TGTTTGAAAGCAGTCTATTCTGAG	c3p77663753ES	GAGCAAAGTTACTTGAAAGAAAGG
chr3	88879828	88880168	88797138	88797478	+	81	340	5	noL1	COLO1T	0	0	L1PA6				c3p88879998FS	GAATCTGACAATTATGTGTCTTGG	c3p88879998ES	GGACCTGACTGTTAGAAGGAAAAC
chr3	98821421	98821625	97338731	97338935	+	1209	204	14	noL1	COLO1T	0	0	L1PA12		DKFZp434C1418,EPHA6		c3p98821523FS	TCTGTAGGTTGTCCATTTACTCTG	c3p98821523ES	AGCAAACTCTCAGGATACAAAATC
chr3	101836484	101836592	100353794	100353902	-	26	108	2	noL1	COLO1T	0	0	(CA)n		GPR128		c3p101836538FS	CACAGCTAAAAAGTGATAGAGCTG	c3p101836538ES	CTGTGTGTTACAAAGGTCGTAGAG
chr3	175764389	175764629	174281695	174281935	-	162	240	4	noL1	COLO1T	0	0	LTR42		AJ607401,AJ607400,AJ607399		c3p175764509FS	TGATTAATTTATTTTCTGATCCCTAAG	c3p175764509ES	ACACATTCTTTTCAAGCACTGTAG
chr3	181398714	181399088	179916020	179916394	-	540	374	7	noL1	COLO1T	0	0	MLT2B1				c3p181398901FS	CTTTAAAGCCTCTATCTCCAACTG	c3p181398901ES	GGGTACATGGGCTTTATAATACTG
chr4	61300751	61300952	61618156	61618357	+	70	201	4	noL1	COLO1T	0	0					c4p61300851FS	CAGAAACAGGAACAGATGTCTATC	c4p61300851ES	TCTCTACTTAAAAACAATGGGAGG
chr4	136637905	136638633	136418455	136419183	-	14	728	4	noL1	COLO1T	0	0	Tigger1,(CA)n				c4p136638269FS	TCTACTGGTACATTTCCATCAGAG	c4p136638269ES	TATATGTGTGTGTGTGTGTGTGTG
chr4	138850787	138850896	138631337	138631446	-	19	109	2	noL1	COLO1T	0	0	L1MA7				c4p138850841FS	AATGCTATCAATTTTTACATGCTG	c4p138850841ES	ACCAACACATACACAGATCTTAGG
chr4	166273063	166273511	166053613	166054061	+	326	448	7	noL1	COLO1T	0	0					c4p166273287FS	TATTCTAAGGGACTTTGTTTCTGG	c4p166273287ES	TGTTTCAAAAACAACAACAACAAC
chr4	168377512	168377757	168140937	168141182	+	13	245	3	noL1	COLO1T	0	0			SPOCK3		c4p168377634FS	TCAAATTATGTAAAATGGAAAAAGG	c4p168377634ES	AAGCAAAAGTGAGCTGTGATTAAC
chr5	9539205	9539375	9486205	9486375	+	256	170	5	noL1	COLO1T	0	0	L1PA8		SEMA5A		c5p9539290FS	ATCTCTCTTGACTGTCTCCTTGTC	c5p9539290ES	GAAAATGAGAACCTGCTATACACC
chr5	21888098	21888199	21852341	21852442	-	115	101	2	noL1	COLO1T	0	0			CDH12		c5p21888148FS	ACTTAGATAGAGATGCTGGGAATG	c5p21888148ES	AAAGGTCACTTACTGGATTACAATG
chr5	40361424	40361678	40325667	40325921	+	74	254	2	noL1	COLO1T	0	0	MER57A1				c5p40361551FS	TCTCTATTTGAGTCCTTGTGAATG	c5p40361551ES	CTCCAGATATGAAGAATTAGAGGC
chr5	86916536	86916707	86880780	86880951	-	14	171	2	noL1	COLO1T	0	0	L1PA14				c5p86916621FS	ATTTATGGGTAAAGAGTAAACCCC	c5p86916621ES	TTAAGGAAAGAAGGAAAAAGGAAG
chr5	113410764	113411143	113382865	113383244	+	16	379	2	noL1	COLO1T	0	0	L1ME2,AluY,AluJr4				c5p113410953FS	GGAAATTACATCCCAATAAACAAG	c5p113410953ES	GAAAACATAGGGAGACCCTGTC
chr5	144252719	144252993	144272526	144272800	+	27	274	2	L1PA2	COLO1T	0	0	L1MA1,L1PA2				c5p144252856FS	TTAGCATTTCTTATAGGATGGGTC	c5p144252856ES	GATGAGTTAATGTCCTTTGTAGGG
chr5	159318794	159319421	159386216	159386843	+	25	627	7	noL1	COLO1T	0	0	L2c,L2b,AT_rich		ADRA1B		c5p159319107FS	AGAGTTATGATCGAAACGCTAATC	c5p159319107ES	TACAGTTCCCAAAGAGTTAAGAGG
chr6	91767881	91768034	91711160	91711313	-	629	153	5	noL1	COLO1T	0	0	MIRb,L1MC5				c6p91767957FS	AGAACCTCTGACAGAACTACCAAG	c6p91767957ES	TGAGTCAGAAAACATGAAATATGG
chr6	120238190	120238565	120196491	120196866	-	55	375	4	noL1	COLO1T	0	0					c6p120238377FS	TTCCAGATTTGTTAGGTTCTATGG	c6p120238377ES	TTTCAGGAAATCAAAAATAAAAGC
chr6	156665832	156665941	156624140	156624249	+	11	109	2	noL1	COLO1T	0	0	L1MC1				c6p156665886FS	TGCTATTGAATCACAGTGAAAAAG	c6p156665886ES	ATCACTAGAGGGAATGCAAAATAG
chr7	54612457	54612701	54644963	54645207	-	27	244	3	noL1	COLO1T	0	0	MLT1A0		BC036261		c7p54612579FS	AAAGAGTAAATGACAGTACAGCACC	c7p54612579ES	ATTATTTGTCCAACAACTTTCTCC
chr7	90822996	90823106	90985060	90985170	-	114	110	4	noL1	COLO1T	0	0					c7p90823051FS	GAGATACTTTGGGACCATGTAAAC	c7p90823051ES	TCATTTGTTTGTAAATGAGAGCAG
chr7	100559187	100559308	100772467	100772588	+	34	121	4	noL1	COLO1T	0	0	AluY		SERPINE1		c7p100559247FS	TTCCTTTCTTTCTTTGTTTCTTTG	c7p100559247ES	GTAGATTTACCGCTTATTCACCAC
chr8	17898994	17899278	17854714	17854998	-	38	284	4	noL1	COLO1T	0	0	L1MA2		PCM1		c8p17899136FS	CATGTCTTGAAAAGTTGTTGTAGC	c8p17899136ES	AATTCTAGAGTTGAAAAACGCAAC
chr8	62975177	62975406	62812623	62812852	+	608	229	3	noL1	COLO1T	0	0	MER50-int				c8p62975291FS	GTACACTAATGCAAAGGTCAAATC	c8p62975291ES	CAGGAACTGTGTAGACAAGGTATG
chr8	72175724	72176136	72013170	72013582	+	244	412	5	noL1	COLO1T	0	0		LINE:Stewart			c8p72175930FS	TTGTGTAAAACTCTCATAGTGCTTG	c8p72175930ES	AATCATTCATGTGGTGTCTATTTG
chr8	128048493	128048865	127979311	127979683	+	16	372	2	noL1	COLO1T	0	0	AT_rich,MIR3,MIRc				c8p128048679FS	TCCAAAGAATTTCAGTAACTTTCC	c8p128048679ES	CATTTATTCACAGTCTGAGTTTGC
chrX	22736795	22736987	22826874	22827066	+	521	192	5	noL1	COLO1T	0	0	L1MA8				cXp22736891FS	TGCCCTTTATTAAATAGACTGTCC	cXp22736891ES	CACTCTTGCAATTTTTATTCAATG
chrX	80934319	80934584	81047663	81047928	+	41	265	4	noL1	COLO1T	0	0	L1PA4				cXp80934451FS	GAATCTGACAATTATGTGTCTTGG	cXp80934451ES	ACATTCCTTATTGTTTTTCACAGG
chrX	87953285	87953491	88066629	88066835	-	36	206	2	noL1	COLO1T	0	0	L1PA16				cXp87953388FS	AGGTATAAGCTTCCAAAAGTCCTC	cXp87953388ES	CAAATCAAAACTGCAATGAGATAC
chrX	100992751	100993136	101106095	101106480	+	378	385	7	noL1	COLO1T	0	0	L1M4c		NXF5		cXp100992943FS	TTTGTATTTTTAGTAGAGACGGGG	cXp100992943ES	CTTTTTATGGCTGCATAGTATTCC
chrY	21602589	21603062	23193201	23193674	+	11	473	3	L1PA2	COLO1T	0	0	L1PA2,L1P3b				cYp21602825FS	TAATCCACAAAGAGAAAGGAAGAG	cYp21602825ES	TCATTCTCAGTAAACTATCGCAAG
chr1	45149794	45149994	45377207	45377407	-	14	200	2	L1PA3	COLO2T	0	0	L1PA3		EIF2B3		c1p45149894FS	ATTAGCTTTTAACCAGCATCTCAC	c1p45149894ES	TCATTCTCAGTAAACTATCGCAAG
chr1	96412444	96412580	96639856	96639992	+	10	136	2	L1PA3	COLO2T	0	0	L1ME4a,L1PA3				c1p96412512FS	AGAATTGTAGGGTAAAGAGTTTGC	c1p96412512ES	ATACACACGTATGTTTATTGCAGC
chr1	102173570	102173688	102400982	102401100	+	506	118	5	noL1	COLO2T	0	0	L1PA14		OLFM3,NOE3		c1p102173629FS	TTTATTGAAAGCCTTTTATCCATC	c1p102173629ES	TAGAAAGACCTCAAATTAACGACC
chr1	118179800	118180111	118378277	118378588	+	6979	311	11	noL1	COLO2T	0	0	AluSx1,L1MC4a				c1p118179955FS	CCTCTCTAGGGAATATTCTAAGCC	c1p118179955ES	TTTAAAGCTTGGAACATGATAGTG
chr1	121053461	121053804	121351938	121352281	+	186	343	2	noL1	COLO2T	0	0	ALR/Alpha				c1p121053632FS	AGTTGAACATTCCCTTTGATAGAG	c1p121053632ES	AGAATGCTTCTGTCCAGTTTTTAC
chr1	145247121	145247408	146780497	146780784	+	14	287	3	L1PA4	COLO2T	0	0	L1PA4,L1PA7		KIAA1693,NBPF1,BC036212		c1p145247264FS	TCTGCCTTAATTTCGTTATTTACC	c1p145247264ES	ACAACAAACACAGCATATTCTCAC
chr1	145346976	145347120	146880352	146880496	+	14	144	2	L1PA4	COLO2T	0	0	MSTB		KIAA1693,NBPF1,BC036212	BC036212.2	c1p145347048FS	TTTAGAAATAGATTCCCAAGCAAC	c1p145347048ES	TCATTCTCAGCAAACTATCACAAG
chr1	150609555	150609831	152342931	152343207	+	32	276	3	L1PA4	COLO2T	0	0	L1PA4				c1p150609693FS	AGGTAAACCATTCAGTCTTTCAAC	c1p150609693ES	ATACTTCCCAACTCATTCTGAGAG
chr1	178575415	178575620	180308792	180308997	+	11	205	2	L1PA5	COLO2T	0	0	L2a,L1PA5		ACBD6		c1p178575517FS	ACTTCCTTTCATTGCTTCAGTAAC	c1p178575517ES	GACTGGATTAAGAAAATATGGCAC
chr1	186265291	186265392	187998668	187998769	+	923	101	3	noL1	COLO2T	0	0	L1MB1				c1p186265341FS	TACTTGTAACTCCTGGGCTAATTG	c1p186265341ES	AAAGGTTCCAATTTCTCTAAATCC
chr1	188544374	188544603	190277751	190277980	+	11	229	2	L1PA3	COLO2T	0	0	L1MEe,L1PA3,L1MB3		FAM5C		c1p188544488FS	TTAATCTGTTGATGTACACTTGGG	c1p188544488ES	TTGCTTTTGAGAAGACATAAGAAC
chr1	195480524	195480882	197213901	197214259	-	30	358	4	L1PA4	COLO2T	0	0	L1PA4,L1PA7				c1p195480703FS	GTTTTCTTATTTGCTTTTCACCTC	c1p195480703ES	AAGATTTTAAAGCAGCCATCATAG
chr1	205294858	205295087	207228235	207228464	-	14	229	2	noL1	COLO2T	0	0			PFKFB2		c1p205294972FS	TTTTTATAGGTGAGGAAACAGAGG	c1p205294972ES	AAGTACAAAGGCTAAACCTGTGAG
chr1	215498726	215498931	217432103	217432308	+	17	205	3	L1PA4	COLO2T	0	0	AluJo,L1PA4,MLT1I				c1p215498828FS	TCAGATCTTCTGTCCCATGTATAG	c1p215498828ES	CAAATGTCCAACAATGATAGACTG
chr10	51708025	51708140	52038019	52038134	-	13	115	2	noL1	COLO2T	0	0	(T)n				c10p51708082FS	CTTCCTCTGAATCAATGTGTACTG	c10p51708082ES	TTCCCAGTTATAGGAAATAGCATC
chr10	52852175	52852514	53182169	53182508	-	1171	339	8	noL1	COLO2T	0	0			PRKG1		c10p52852344FS	AAAGTGTTCTGGTTTGGTTAAGAG	c10p52852344ES	CTCTTCAAACCACTATTATTTGGC
chr10	61667316	61667416	61997310	61997410	-	11	100	2	L1PA3	COLO2T	0	0	L1PA3,AT_rich		ANK3		c10p61667366FS	AGGACTATTTGGTTTGAGTGAAAG	c10p61667366ES	TAGGGTTTTTAAACAAACGTCTTC
chr10	62128639	62128826	62458633	62458820	+	21	187	2	L1PA3	COLO2T	0	0	(TAA)n,L1PA3,L1PB1		ANK3		c10p62128732FS	TACTTGAATAAAACAGGGTTCAGC	c10p62128732ES	CAAATGTCCAACAATGATAGACTG
chr10	85936474	85936825	85946494	85946845	+	64	351	2	noL1	COLO2T	0	0	(TG)n				c10p85936649FS	CTGACTTCTCCTTCAACACTCAAG	c10p85936649ES	GTGTATGTGAGGGTACAGGATTTG
chr10	124447298	124447511	124457308	124457521	-	10	213	2	noL1	COLO2T	0	0			C10orf120	C10orf120.L	c10p124447404FS	AATTAATGATTGTCGTTTTAAGCC	c10p124447404ES	TAAAAAGAAACATTCCTCTCCTTG
chr10	129525687	129525910	129635697	129635920	-	4322	223	17	L1PA10	COLO2T	0	0					c10p129525798FS	AGTGGAGAAATGCTGATTAAGTTG	c10p129525798ES	TAAGACCACACATCTACAACCATC
chr11	4241451	4241589	4284875	4285013	+	10	138	3	noL1	COLO2T	0	0	L1PA4				c11p4241520FS	CTCTCTTCTGGCTTGTAGAGTTTC	c11p4241520ES	AGTATCTTCAAATGCTCCTGAGAG
chr11	26273453	26273675	26316877	26317099	+	6305	222	3	noL1	COLO2T	0	0	AluY				c11p26273564FS	ACAGAAACATCTAGAGAGAGGTGG	c11p26273564ES	GGTAATTTGTTGTTGTTGTTGTTG
chr11	43753597	43753743	43797021	43797167	-	13	146	2	L1PA3	COLO2T	0	0	L1PA3		HSD17B12		c11p43753670FS	AGAAATCCTCATATTTTGACCTTG	c11p43753670ES	TGGAAATCATCATTCTCAGTAAAC
chr11	48501863	48502126	48545287	48545550	-	12	263	3	L1PA4	COLO2T	0	0	L1PA4				c11p48501994FS	TTATTAGGATTTGCTCTGTGTTTG	c11p48501994ES	TGATGAGTTCATGTCTTTTGTAGG
chr11	99851564	99851719	100346354	100346509	-	12	155	2	L1PA2	COLO2T	0	0	L1PA2				c11p99851641FS	TACCTTCAATCCTTAACTACCCAG	c11p99851641ES	CAAATGTCCAACAATGATAGACTG
chr11	121813148	121813256	122307938	122308046	+	17	108	2	L1PA4	COLO2T	0	0	L1PA4				c11p121813202FS	TTCCTTAATTTCACATGAAAAGTG	c11p121813202ES	AAAAATCTTGCTGATCCTATTCAC
chr12	13756551	13756676	13865284	13865409	+	11	125	2	L1PA4	COLO2T	0	0	AT_rich,L1PA4,L1ME2		GRIN2B		c12p13756613FS	AAGAGAAGCTATCTCCAAGAACTG	c12p13756613ES	GATAGACTGGATTAAGAAAATGGG
chr12	18980798	18981111	19089531	19089844	+	968	313	12	noL1	COLO2T	0	0	L4,LTR79				c12p18980954FS	CAGTGAGTGAGTTAATCAGACTGG	c12p18980954ES	ACATCAACTATGGAAATTCCTCTG
chr12	23763958	23764071	23872691	23872804	+	19	113	2	noL1	COLO2T	0	0	AluJr		SOX5		c12p23764014FS	CCACATGTAGGGTATTTATTAGGC	c12p23764014ES	GATTCACAAGGTTTCTAAGCTCTC
chr12	28117513	28117662	28226246	28226395	-	2638	149	7	noL1	COLO2T	0	0	L1MA8	LINE:Ewing			c12p28117587FS	ACCTTTTTGGAGAATGTAAATGAG	c12p28117587ES	AGAAAAGTCTGATCCATAGAATGC
chr12	36282790	36282894	37996523	37996627	+	296	104	4	noL1	COLO2T	0	0	ALR/Alpha				c12p36282842FS	CTGAGAATGCTTCTGTCTAGGTTC	c12p36282842ES	GTTGAAGCTTTCTTTTGATAGAGC
chr12	43591993	43592130	45305726	45305863	+	14	137	2	L1PA4	COLO2T	0	0	(TAAA)n,L1PA4				c12p43592061FS	TAGCTTTTTGAGATTTTCAGTGTG	c12p43592061ES	GTAAATGCCTGTTTAATCCTTGTC
chr12	47258595	47258897	48972328	48972630	+	14	302	4	L1PA3	COLO2T	0	0	AluSx,L1M5				c12p47258746FS	ACAGTGAGTGGGTAGATAGGAAAG	c12p47258746ES	ACTGCATATTCTCACTCATAGGC
chr12	104552205	104552501	106028075	106028371	+	29	296	2	L1PA2	COLO2T	0	0	L1PA2				c12p104552353FS	GTCCATCAGGACAGAAATCTTATC	c12p104552353ES	TCATTCTCAGTAAACTATCGCAAG
chr12	118003350	118003529	119518967	119519146	+	22	179	2	noL1	COLO2T	0	0	L2a		KIAA1853		c12p118003439FS	ATCCTACTCAAATTAAGCCACATC	c12p118003439ES	GCCCTAAATCTACTCATTCGTTAG
chr12	131206929	131207169	132640976	132641216	-	13	240	2	noL1	COLO2T	0	0	(CA)n,(CACTA)n				c12p131207049FS	no primer	c12p131207049ES	no primer
chr13	28375266	28375410	29477266	29477410	-	36	144	2	L1PA4	COLO2T	0	0	L1MD2,L1PA4				c13p28375338FS	TTTGGGAAGTGTTTTCTTATTTTC	c13p28375338ES	CAAATGTCCAACAATGATAGACTG
chr13	30876832	30877136	31978832	31979136	+	4882	304	10	noL1	COLO2T	0	0	AluSx1,MER57-int				c13p30876984FS	TTCTATTGTTCGTAGAGGCATAAG	c13p30876984ES	AATTAAAGCTTCAGGTACATTTGG
chr13	37374796	37374912	38476796	38476912	+	14	116	2	L1PA6	COLO2T	0	0	AluSz,L1PA6				c13p37374854FS	GACTCTGATGACGTGTATGTTAGC	c13p37374854ES	GACTGGATTAAGAAAATATGGCAC
chr13	59184692	59184841	60286691	60286840	-	1421	149	5	noL1	COLO2T	0	0	L2b		diap3,DIAPH3		c13p59184766FS	AGAGGCAGAAGATACATCATTAGG	c13p59184766ES	AGGTACTGGTTAGCAGCATGTTAG
chr13	60284277	60284694	61386276	61386693	-	23	417	3	L1PA4	COLO2T	0	0	L1PA4,MER96B				c13p60284485FS	ATATAATGATTAACCTAAGCCCCC	c13p60284485ES	CTGCATGTTCTCACTCATAGGTAG
chr13	62465006	62465322	63567005	63567321	-	31	316	3	noL1	COLO2T	0	0	L1PB3				c13p62465164FS	CCTAATTTGTTGAGGGTTTTTATC	c13p62465164ES	AGAAGAACAAACAAAACTCAAAGC
chr13	76818732	76819057	77920731	77921056	+	24	325	6	noL1	COLO2T	0	0					c13p76818894FS	TTTGCAGAGCTCATAGTGAGTAAC	c13p76818894ES	TGTTTACAGAATGCAAGAGAAAAG
chr13	92021791	92021954	93223790	93223953	-	52	163	3	noL1	COLO2T	0	0	X5B_LINE		GPC5		c13p92021872FS	TATAGAGAGACAGCAACTCTGTGC	c13p92021872ES	TTATAGCCTAAGATTTCACATGGC
chr13	96188652	96188779	97390651	97390778	+	17	127	4	noL1	COLO2T	0	0	L1MC,MER104		HS6ST3		c13p96188715FS	ACTAATTCTTTTGAGGTGTTTTGC	c13p96188715ES	TTTTGGCCCTGTAAGGTAATATAG
chr14	37401761	37401959	38332010	38332208	-	14	198	2	L1PA2	COLO2T	0	0	L1PA2		C14orf25		c14p37401860FS	TGAACTTTTACTCTCTGAGCACAC	c14p37401860ES	CAAATGTCCAACAATGATAGACTG
chr14	55550266	55550399	56480513	56480646	-	15	133	3	L1PA3	COLO2T	0	0	MSTD				c14p55550332FS	ACATTCCATTTGCTTAGGTAGAAG	c14p55550332ES	TCATTCTCAGTAAACTATCGCAAG
chr14	71341805	71342098	72272052	72272345	+	19645	293	8	noL1	COLO2T	0	0	AluSx,MSTC				c14p71341951FS	GTACCTGTAATCCCAGCTACTTG	c14p71341951ES	ACTGTGGTTCAGTTTGTATGTTTG
chr14	79720569	79720707	80650816	80650954	+	21	138	4	L1PA2	COLO2T	0	0	MLT1J				c14p79720638FS	AATAGCATTTGGCATTTCTCTTAC	c14p79720638ES	ATGAGGAAAATCCAGAATAGAGTG
chr14	96571797	96571962	97502044	97502209	+	324	165	3	noL1	COLO2T	0	0					c14p96571879FS	TAGTAGTCTGCTGTGGAGACTCAG	c14p96571879ES	ACCTTACATCCACTATTTTGTTGG
chr15	25015556	25015903	27432810	27433157	-	25	347	3	L1PA3	COLO2T	0	0	L1PA3,L1PA16		GABRG3		c15p25015729FS	ATCTAATTCTGTGAAGAAAATGGC	c15p25015729ES	AACTAGAAATACCATTTGACCCAG
chr15	41530480	41530723	43743188	43743431	-	11	243	2	L1PA3	COLO2T	0	0	AluSz6,L1PA3		TP53BP1		c15p41530601FS	ATACTTGAAGAGGTCTCCAAACTG	c15p41530601ES	CAAATGTCCAACAATGATAGACTG
chr15	51204908	51205614	53417616	53418322	-	19	706	3	noL1	COLO2T	0	0	MIRb,MIRc				c15p51205261FS	CTTTAAATGTTGCCTGTACTGATG	c15p51205261ES	TAATAACTTGAACTTTCACTGCCC
chr15	92815944	92816653	95014940	95015649	+	11	709	2	noL1	COLO2T	0	0	AluSx1		MCTP2		c15p92816298FS	TTGGATATAGAGAAAGAGGGATTG	c15p92816298ES	CTCATCTGTGCTTAGTTCTTGTTG
chr16	13567388	13567503	13659887	13660002	+	12	115	2	L1PA4	COLO2T	0	0	L1PA4				c16p13567445FS	ACCATTCCACTCTTTGATTTTATG	c16p13567445ES	ATGACGAGTTCATGTCCTTTGTAG
chr16	25564343	25564477	25656842	25656976	+	10	134	3	L1PA4	COLO2T	0	0	L1MD3,L1PA4				c16p25564410FS	TTAAGTGAAGAAGGGAGATTCAAC	c16p25564410ES	AACTTGTGTGTGAATGTTTACTGC
chr16	46561590	46561703	48004089	48004202	+	23	113	2	noL1	COLO2T	0	0					c16p46561646FS	GTAAGAGACTCTGCCAAATTAACC	c16p46561646ES	TTCTTGTTCCTCTTATATTCCCAC
chr17	13914835	13914945	13974110	13974220	+	16119	110	20	noL1	COLO2T	0	0	MIR3		COX10		c17p13914890FS	TATAGAATGGAAAGGCAGAAAAAC	c17p13914890ES	CGTTTATTATTTGTTTTTCCCAAC
chr18	7840861	7841164	7850861	7851164	+	24	303	2	noL1	COLO2T	0	0	L1MEg		PTPRM		c18p7841012FS	TTTGGGTCCATAACTCTTCTTTAC	c18p7841012ES	GAAATTCATATTTTGCTAAGGAGG
chr18	23520320	23520539	25266322	25266541	+	1025	219	6	noL1	COLO2T	0	0					c18p23520429FS	ATTTTTAATACGGTAAATCCCCTC	c18p23520429ES	CATTGTTTTCAAAAAGTATTCACG
chr18	36647208	36647483	38393210	38393485	-	13	275	4	L1PA7	COLO2T	0	0	L1PA7,(TCTCTG)n				c18p36647345FS	AAGGAGTTTGTTTTATCAGCATTG	c18p36647345ES	ACAGACTGGATAAAGAAAATGTGG
chr18	67449385	67449538	69298405	69298558	+	5986	153	9	noL1	COLO2T	0	0					c18p67449461FS	AACCTTGAGTGTTATGCTTCTTTC	c18p67449461ES	AAGACCACTGAAGCTCAGTATAGC
chr19	34392942	34393140	29701102	29701300	-	29	198	3	L1PA3	COLO2T	0	0	L1PA3		UQCRFS1		c19p34393041FS	AGAAAACTCAATAAAATGGCTTTG	c19p34393041ES	TCATTCTAAGTAAACTGTCGCAAG
chr19	39056847	39057461	34365007	34365621	+	21	614	2	noL1	COLO2T	0	0	AluJo				c19p39057154FS	TCTTTCCTTTTTATTTTGTTTTGG	c19p39057154ES	ACCAAAAATACAAAAATTAGCTGG
chr19	46195834	46196034	41503994	41504194	-	17	200	3	L1PA3	COLO2T	0	0	AluJr		CYP2B6,CYP2A7		c19p46195934FS	ATTTAGATTTTTCAGGGGAATGAC	c19p46195934ES	TAATGCTAGATGACGAGTTAGTGG
chr2	16439791	16439995	16576310	16576514	-	22	204	4	noL1	COLO2T	0	0	(CA)n				c2p16439893FS	CTTCACATCACTTAAAGACACACG	c2p16439893ES	CTATGGTGTGTGAGGATCTCTATG
chr2	63641697	63642142	63788193	63788638	+	13	445	2	L1PA10	COLO2T	0	0	AluSc8,L1PA10		LOC51057		c2p63641919FS	GTCTAGCTTTTGTTCACATGTTTG	c2p63641919ES	CTAATGTAAATGACCAGTTGATGG
chr2	140975474	140975677	141259004	141259207	-	2783	203	11	noL1	COLO2T	0	0			LRP1B		c2p140975575FS	TGGTTTTAGAAGCTATTTCTGTCC	c2p140975575ES	ATTTGTGAATGTTTTCAACAACTG
chr2	183204081	183204324	183495836	183496079	-	10	243	2	L1PA3	COLO2T	0	0	MLT2B1,L1PA3				c2p183204202FS	GAACACAGACATCATAAACACACC	c2p183204202ES	TATGAAAGTGCTTTGCAACTGTAG
chr2	188158592	188158920	188450347	188450675	-	4923	328	16	noL1	COLO2T	0	0					c2p188158756FS	TTGAAACTTTAACAAGGAGCCTAC	c2p188158756ES	CCTAAAAACAGGTAAGACCACAAC
chr2	188578689	188578934	188870444	188870689	+	268	245	4	noL1	COLO2T	0	0	AluJr				c2p188578811FS	ACATCAAATTAAATGTTCCATGAG	c2p188578811ES	CTGACCTACATGCGTAATTTTTG
chr20	49197366	49197491	49763959	49764084	+	12	125	4	L1PA3	COLO2T	0	0	Tigger2a				c20p49197428FS	ATACACACACACACACACACACAC	c20p49197428ES	AAGAGATAGGTTTTGCTATGTTGC
chr20	52294077	52294338	52860670	52860931	+	11	261	3	noL1	COLO2T	0	0	L1MD2,L1PA4				c20p52294207FS	ACTAAGAGAAGATGTCAAACAGGC	c20p52294207ES	ATGATGAGTTCATGTCCTTTGTAG
chr21	14701664	14701777	15779793	15779906	-	10	113	2	L1PA3	COLO2T	0	0	L1MA3,MSTA				c21p14701720FS	GTAATTTTGATTTGCATTTCTGTG	c21p14701720ES	ATGATGAGTTCATGTCCTTTGTAG
chr21	25031271	25031513	26109400	26109642	+	15	242	3	L1PA4	COLO2T	0	0	L1PA4,MLT1A0				c21p25031392FS	TTCATTCCATTCTATTACAACGTG	c21p25031392ES	CAAATGTCCAAAAATGATAGACTG
chr21	25712920	25713401	26791049	26791530	+	9445	481	30	noL1	COLO2T	0	0	L1MDa,AluSz,LTR89		AY035383,AY035382		c21p25713160FS	TTTTTAGTAGAGATGGGGTTTCAC	c21p25713160ES	CTGATAATACCCTAAATGTCCAGG
chr3	35108474	35108775	35133470	35133771	+	15	301	2	noL1	COLO2T	0	0	L1PB1				c3p35108624FS	TATTTCATATTATGTTGGCTGTGG	c3p35108624ES	AGGAAATAACCAATATCAGAGCAG
chr3	66889507	66889707	66806817	66807017	+	10	200	2	L1PA7	COLO2T	0	0	L1PA7				c3p66889607FS	AGGGTAACTACTGTGAAGAGTTCG	c3p66889607ES	AGACATAGGAAGATAAAATGCCAC
chr3	82464910	82465014	82382220	82382324	-	11	104	2	L1PA2	COLO2T	0	0	L1PA2,(TTA)n		BC031255		c3p82464962FS	AGCCATTAGAAGCATAAAGACAAC	c3p82464962ES	CAAATGTCCAACAATGATAGACTG
chr3	106153675	106154130	104670985	104671440	-	39	455	3	noL1	COLO2T	0	0					c3p106153902FS	TTAAAATTATCGGTCTTTCCAGAG	c3p106153902ES	TTAGATCTGTGAAACCACAATGAC
chr3	109465184	109465325	107982494	107982635	+	11	141	2	L1PA2	COLO2T	0	0	L1MB3,L1PA2				c3p109465254FS	TGTATGATTCCTCTTACATGATGC	c3p109465254ES	ATTATGCACAATAGCAAAGACTTG
chr3	112843941	112844635	111361251	111361945	+	10	694	2	noL1	COLO2T	0	0	AluSg4,L1PB1		CD96		c3p112844288FS	ATTGAGATGATCATGTGATTTTTG	c3p112844288ES	TAAATTTCTGGAAAAATACAACCC
chr3	141880359	141880710	140397669	140398020	-	1559	351	8	noL1	COLO2T	0	0	MIRb,MIRc		TRIM42		c3p141880534FS	ATACCATCATCACTTTCCACAAG	c3p141880534ES	GTGCTCTTACTACTTCAGACTCCC
chr3	158931277	158931403	157448583	157448709	+	15	126	2	L1PA2	COLO2T	0	0	THE1D				c3p158931340FS	TAGAGGTGTTAAGGTTTGCTTTTC	c3p158931340ES	TCATTCTCAGTAAACTATCGCAAG
chr3	172320406	172320849	170837712	170838155	+	37	443	4	L1PA4	COLO2T	0	0	L1PA4,AluY		TNIK		c3p172320627FS	AATACAAAAATTAGTCGAGCATGG	c3p172320627ES	AACCATCATTCTCAGCAAACTATC
chr4	11874598	11874729	12265500	12265631	-	11	131	2	L1PA4	COLO2T	0	0					c4p11874663FS	ATCCAATATATAATTTGCAGGTGG	c4p11874663ES	ATAGACTGGATGAAGAAAATGTGG
chr4	29584024	29584126	29974926	29975028	-	15	102	3	L1PA2	COLO2T	0	0	L1PA2				c4p29584075FS	GCCGTAATGTATACTTCATCTGTG	c4p29584075ES	CAAATGTCCAACAATGATAGACTG
chr4	41284394	41284715	41589637	41589958	-	16	321	2	L1PA3	COLO2T	0	0	L1PA3		LIMCH1		c4p41284554FS	AAACTATTCCTCCTCTACTCCTCC	c4p41284554ES	TCATTCTCAGTAAACTATCGCAAG
chr4	45774110	45774385	46079353	46079628	+	12	275	2	L1PA4	COLO2T	0	0			GABRG1		c4p45774247FS	ATTTTCATCGCTGTTTCTTTTATC	c4p45774247ES	AATATGCAACATTTAACGGATTTC
chr4	82104008	82104553	81884984	81885529	-	10	545	2	L1PA7	COLO2T	0	0	AT_rich				c4p82104280FS	AATAATAAATGAGCCCTGTAGCTG	c4p82104280ES	AGGGATAGCATTAGGAGAAATACC
chr4	86794410	86794825	86575386	86575801	-	39	415	4	noL1	COLO2T	0	0	AT_rich,MLT1B,MIRb		ARHGAP24		c4p86794617FS	CCTATAACTGCCATTACAAAATGC	c4p86794617ES	CTAATATCCAAAACTTGTGTCTGC
chr4	93068502	93068886	92849479	92849863	-	995	384	12	noL1	COLO2T	0	0	L1MC3,MSTA				c4p93068694FS	ACATTGATATGGTTTGGATCTATG	c4p93068694ES	AACTTCTGGTATCTCTGTTTCAGG
chr4	107889428	107889575	107669979	107670126	+	251	147	3	noL1	COLO2T	0	0					c4p107889501FS	TGTTTGCAAATAAATCTCAAAGTG	c4p107889501ES	GGGAATTATGATCCAGTCAATTAG
chr4	135964299	135964402	135744849	135744952	-	265	103	2	noL1	COLO2T	0	0					c4p135964350FS	AGGGTTTAGGTTGTACAAAACATC	c4p135964350ES	TGTAGACATGTAACTGCAAGAATG
chr4	145952292	145952434	145732842	145732984	+	19	142	3	L1PA2	COLO2T	0	0	L1PA2,L1PA7				c4p145952363FS	CAAAAGTTTTCTCCCATTCTGTAG	c4p145952363ES	CAAATGTCCAACAATGATAGACTG
chr4	171412148	171412535	171175573	171175960	-	12	387	3	L1PA3	COLO2T	0	0	(TTTTA)n,AT_rich,AluYc,MSTB				c4p171412341FS	GTGACATGGTTTGGATATTTGTC	c4p171412341ES	TCATCATTCTCAGTAAACTATCGC
chr4	172241488	172241595	172004913	172005020	-	456	107	5	noL1	COLO2T	0	0	L1MEc				c4p172241541FS	TGTTGTAATGTAGGTCTCCTGTTG	c4p172241541ES	AAATTGTTAGGTATTTGAAGCAGC
chr4	183617696	183617813	183380702	183380819	+	1323	117	5	noL1	COLO2T	0	0			ODZ3		c4p183617754FS	TAATAAAACCTTCAAGTGGTCTCC	c4p183617754ES	TATTCCCGAGAGAGTATTTACCAC
chr5	16025072	16025427	15972072	15972427	-	592	355	9	noL1	COLO2T	0	0	MLT2F				c5p16025249FS	TTGCACCATCAATAATGTGTAATC	c5p16025249ES	ATGTCTCGTTAAAGGCTTATTTTG
chr5	36235026	36235315	36199269	36199558	+	10	289	3	L1PA4	COLO2T	0	0	L1PA4		C5orf33		c5p36235170FS	TCCTCTACAGTTGTAAAAAGAGGG	c5p36235170ES	AACTATTTTAGAGGCAAACTGTCC
chr5	62265885	62266226	62230129	62230470	+	101	341	3	noL1	COLO2T	0	0					c5p62266055FS	AAGTAAAAGAACCCAACTGAAAAG	c5p62266055ES	GGTACTGAAGCATACAAAACACAC
chr5	96994922	96995176	96969166	96969420	+	23	254	2	L1PA2	COLO2T	0	0	L1PA2				c5p96995049FS	TCAAAGGTAGGGATTACAAAAGAG	c5p96995049ES	CAAATGTCCAACAATGATAGACTG
chr5	130269806	130269986	130241907	130242087	+	10	180	2	L1PA3	COLO2T	0	0	L1MD,A-rich				c5p130269896FS	CCACAACATCTACTCACTTCTTTG	c5p130269896ES	GAACTAGTTTACAGTCCCACCAAC
chr5	145369542	145369697	145389349	145389504	-	16	155	2	L1PA5	COLO2T	0	0	L2b,L1PA5		SH3RF2		c5p145369619FS	CCTTCTCTCTGTTTCTTTCTTCTG	c5p145369619ES	CGTATGTTTATTGTGGCACTATTC
chr5	164908068	164908791	164975490	164976213	+	12	723	2	noL1	COLO2T	0	0	(CAAAA)n,L1M5,MLT1A0				c5p164908429FS	TGTATTTCCATATCTGTGAATTGG	c5p164908429ES	ATATCATGAAAAGCAGTGAATGTG
chr5	170443399	170443541	170510794	170510936	-	26	142	2	L1PA2	COLO2T	0	0	THE1B		DKFZp666P032,RANBP17		c5p170443470FS	AGCAGCCTGAACTAAGACAATTAC	c5p170443470ES	ATGATGAGTTCATGTCCTTTGTAG
chr6	18979787	18980373	18871808	18872394	-	40	586	2	noL1	COLO2T	0	0	L1MB2,L1PB1,AT_rich,AluY				c6p18980080FS	ACCAAACATCATATGTTCTCACTG	c6p18980080ES	TGAAACCCCATCTCTACTAAAAATAC
chr6	62969041	62969217	62911082	62911258	+	16	176	3	L1PA4	COLO2T	0	0	L1PA4		KHDRBS2		c6p62969129FS	AGCTTAAGGTATTAGGCACAAATG	c6p62969129ES	TGATGAGTTCATGTTCTTTGTAGG
chr6	63183872	63184003	63125913	63126044	+	229	131	3	noL1	COLO2T	0	0	HAL1				c6p63183937FS	CATGTACCACTCCTCTTTACTTCC	c6p63183937ES	GAAAATAAAGGATGCAATTTTGAG
chr6	73342520	73342754	73285799	73286033	+	10	234	3	L1PA2	COLO2T	0	0	L1MC1,L1PA2				c6p73342637FS	ATAAGATGCTGCCAAACTATCTTC	c6p73342637ES	TCATTCTCAGTAAACTATCGCAAG
chr6	81990045	81990182	81933326	81933463	+	28	137	3	L1PA4	COLO2T	0	0	(TAA)n,L2b				c6p81990113FS	ATAATTCACCACAGCCTCTAACTC	c6p81990113ES	TTGAAAGGCATAGGTAAGATTAGG
chr6	87790329	87790744	87733610	87734025	+	3198	415	8	noL1	COLO2T	0	0	(CA)n				c6p87790536FS	TTATCTTCAGCATGATTATTGAGG	c6p87790536ES	TCATATGGGCTATCATATTTTTCC
chr6	113062082	113062252	112955389	112955559	+	48	170	4	L1PA3	COLO2T	0	0	L1PA3,L2				c6p113062167FS	AATTAAAATGTTTTGGAAGCAGAC	c6p113062167ES	TACTATGCAGCCATAAAAATGATG
chr6	115350869	115351025	115244176	115244332	-	15	156	2	L1PA5	COLO2T	0	0	L1PA16				c6p115350947FS	CTACTTCCGTGAAAAATAACTTGG	c6p115350947ES	TACACCATGTAATACTATGCAGCC
chr6	117224598	117224784	117117905	117118091	-	39	186	2	L1PA3	COLO2T	0	0	L1PA3		GPRC6A		c6p117224691FS	ATAGTCCCTTTCTCACAGCATATC	c6p117224691ES	CCTAACAATGTCTGGCTTTATCTC
chr6	132427290	132427564	132385597	132385871	+	7799	274	15	noL1	COLO2T	0	0					c6p132427427FS	CTAATCACTCCACTCAGCAAATAC	c6p132427427ES	GGGTAAGACACTTCTTTGAAACTC
chr7	24589714	24589862	24623189	24623337	-	14	148	3	L1PA2	COLO2T	0	0	L1PA2		MPP6		c7p24589788FS	TAGTAATCTTTTGGAATGGAGGTC	c7p24589788ES	CAAATGTCCAACAATGATAGACTG
chr7	43206601	43206991	43240076	43240466	+	384	390	3	noL1	COLO2T	0	0	Charlie2a,Charlie2b		KIAA0322,HECW1		c7p43206796FS	GTCTTCAAGCTGAATAACACACAC	c7p43206796ES	TGTCTCAGTTTCTGGAACATCTAC
chr7	51000013	51000399	51032519	51032905	-	11	386	2	L1PA3	COLO2T	0	0	L1PA3,(TTTC)n,MER51-int				c7p51000206FS	CTCTCTCTCTCCCTCTCTCTTTTC	c7p51000206ES	TAGATTCTGGATATTAGCCCTTTG
chr7	52756935	52757199	52789441	52789705	+	297	264	4	noL1	COLO2T	0	0	AluSx1	LINE:Ewing,Stewart			c7p52757067FS	TCATTTATAAAGCACAGAACAAGC	c7p52757067ES	AAGTTGGGAATTTCATGACTAGC
chr7	52959706	52959938	52992212	52992444	+	300	232	7	noL1	COLO2T	0	0	AluJb				c7p52959822FS	ATTTCATATGGAACTATGCTGATG	c7p52959822ES	CAAGTCACTTCACTTTCTGATTTG
chr7	71370691	71370939	71732755	71733003	-	1016	248	3	noL1	COLO2T	0	0	AluJr,MIR		CALN1		c7p71370815FS	AGCTTTAAAAATATCTCTCCACCC	c7p71370815ES	CTTGGTGACAAAGTGTATGAAGTC
chr7	118071271	118071408	118284035	118284172	+	18	137	2	L1PA12	COLO2T	0	0	L1PA12				c7p118071339FS	TGAATTAATAGCTGGATTCCTACC	c7p118071339ES	TTATTATGTCATTGAAAGCCAGAG
chr7	131313546	131313671	131663006	131663131	-	24	125	2	L1PA4	COLO2T	0	0	(TTTA)n,L1PA4				c7p131313608FS	GGTAGTGGCTACTATATTGGATGG	c7p131313608ES	CGTATGTTTATTGTGGCACTATTC
chr7	152581333	152581732	152950400	152950799	-	3234	399	21	noL1	COLO2T	0	0					c7p152581532FS	ATTCACAAAAAGACAGACACACAC	c7p152581532ES	TGCATTGACTCAGATTTACTGTTC
chr8	41670050	41670151	41550893	41550994	-	168	101	2	noL1	COLO2T	0	0	AluSq		ANK1,NKX6-3		c8p41670100FS	ATACCATGGCTACTATTGCCACAC	c8p41670100ES	AGAGATGGAAGGATGATGTATCTG
chr8	60584684	60584990	60422130	60422436	-	7944	306	9	noL1	COLO2T	0	0					c8p60584837FS	AAAAATACAAAAATTAGCCAGGTG	c8p60584837ES	AAAACTTCTCTTTGAAAGCCTATG
chr8	70269171	70269392	70106617	70106838	+	35	221	3	noL1	COLO2T	0	0					c8p70269281FS	TGAATAGAAGAAACATCTGCTGAC	c8p70269281ES	CTACATCAACTTCATCCTGACATC
chr8	70425800	70426166	70263246	70263612	-	29	366	5	L1PA3	COLO2T	0	0	MER45B				c8p70425983FS	TAATATAGGGACGTGACATGAAAG	c8p70425983ES	ATTCTCACTCATAGATGGGAATTG
chr8	72175688	72176044	72013134	72013490	+	130	356	2	noL1	COLO2T	0	0		LINE:Stewart			c8p72175866FS	GTGAAGTCTACACTAAGCAAGGTG	c8p72175866ES	ATCATTCCATTCTGATTAATTTGG
chr8	80221713	80221815	80059158	80059260	-	23	102	2	L1PA3	COLO2T	0	0	L1PA3				c8p80221764FS	TTTTTGCAACAATAAGAACTCAAG	c8p80221764ES	ACAGAAAGGTAAAGGGAGAAAGAC
chr8	89305253	89305419	89236137	89236303	+	19	166	2	L1PA6	COLO2T	0	0			MMP16		c8p89305336FS	AACTGTCTAAAGAAACACCCTTTG	c8p89305336ES	ACACTGCATGTTGTCACTCATAG
chr8	93120421	93120823	93051245	93051647	-	187	402	11	noL1	COLO2T	0	0	AluSz6,L2b,AluJb		RUNX1T1		c8p93120622FS	AATATAGCAAAGTAAGGTCATGGG	c8p93120622ES	GATAGCTAAAACCTTTTGAGTTGC
chr8	99785923	99786099	99716747	99716923	+	607	176	3	noL1	COLO2T	0	0			STK3		c8p99786011FS	TAACTTGAAAAACAACAAGGTCAG	c8p99786011ES	AAACAAAAGGCAGTACTTGTTACC
chr8	109343734	109343970	109274558	109274794	-	2197	236	10	noL1	COLO2T	0	0	L2c				c8p109343852FS	GTGTGTGTAGGAATTCAGAGATTG	c8p109343852ES	CAATTGCAGATGTTAACGAATAAG
chr8	111653793	111654082	111584617	111584906	+	462	289	4	noL1	COLO2T	0	0	T-rich				c8p111653937FS	TATTGGCAAGTATTGATGATTTTG	c8p111653937ES	GAAAAATGTTTCCCCTGATAAAAC
chr8	112566839	112567093	112497663	112497917	+	10	254	3	L1PA4	COLO2T	0	0	(GAAA)n,L1PA4				c8p112566966FS	TGTATTGTTTGGATTACATTGGTG	c8p112566966ES	AAAAAGCAAACTATTGCAAGGAC
chr8	116019116	116019308	115949940	115950132	-	544	192	4	noL1	COLO2T	0	0	MLT1E1A,MIRc				c8p116019212FS	AATAACAAAAAGGAAGGAAGGAAG	c8p116019212ES	ACTCATGTTGTGAATTGTCTATGG
chr8	140519447	140519608	140450265	140450426	+	1347	161	6	noL1	COLO2T	0	0	L1M4				c8p140519527FS	ATTGACAGTTTTTGTGTGATGAAC	c8p140519527ES	ATGCACATTGAATAATACATCCTG
chr9	11131253	11131378	11141253	11141378	+	25	125	4	noL1	COLO2T	0	0					c9p11131315FS	AGTGGACACAAGAATAAAAGGAAG	c9p11131315ES	CAGACAATCACTCAAAATGGTAAG
chr9	25121469	25121917	25131469	25131917	+	45	448	6	L1PA5	COLO2T	0	0	L1PA5				c9p25121693FS	GTAATGGATTGGCTGTACAGTATG	c9p25121693ES	AACTAGAAATACCATTTGACCCAG
chr9	25154017	25154256	25164017	25164256	+	19	239	3	noL1	COLO2T	0	0	L1MC				c9p25154136FS	ATCATGATGCAATATGTTGAAAAG	c9p25154136ES	TAAGGCCAGCATTACCTTAATATC
chr9	27875961	27876125	27885961	27886125	+	607	164	8	noL1	COLO2T	0	0					c9p27876043FS	AGATAGAGACCATCCTGGCTAAC	c9p27876043ES	CACAAACAAACACTAGCAAAGAAG
chrX	18695141	18695480	18785220	18785559	+	3973	339	6	noL1	COLO2T	0	0	Tigger15a,AluSx4		PPEF1		cXp18695310FS	CTTTCTCTTTCTTCATGCTCTCTC	cXp18695310ES	GGAACCCCATTCTCTACTAAATAC
chrX	32329429	32329589	32419508	32419668	+	37	160	3	L1PA3	COLO2T	0	0	L1MA2		DMD		cXp32329509FS	TCAATGTTTGTAGGCACGTAGTAG	cXp32329509ES	ATACACCTTGGAATACTATGCAGC
chrX	42917285	42917419	43032341	43032475	+	11	134	2	L1PA5	COLO2T	0	0	MER39B,L1PA5				cXp42917352FS	AATTATGTAGGTTCTGTAGCGGTC	cXp42917352ES	TAGACTGGATTAAGAAAATGTGGC
chrX	51719149	51719262	51702409	51702522	-	10	113	2	L1PA3	COLO2T	0	0	L1PA3,L1M1				cXp51719205FS	TTATAGGTGAAGTGTGTTTCTTGC	cXp51719205ES	CAAATGTCCAACAATGATAGACTG
chrX	75786329	75786467	75869925	75870063	-	10	138	2	L1PA4	COLO2T	0	0	L1P3,L1PA4				cXp75786398FS	CTCAAGTGCACATAAAACATTCTC	cXp75786398ES	GAACTAGTTTACAGTCCCACCAAC
chrX	83860906	83861009	83974250	83974353	-	945	103	5	noL1	COLO2T	0	0	AT_rich				cXp83860957FS	TGATGAATTTAGCTCTCATCATTC	cXp83860957ES	ACAGACCTTTATCACTACTCCACC
chrX	87182553	87182898	87295897	87296242	+	2017	345	5	noL1	COLO2T	0	0	L1M2				cXp87182725FS	AGATACCTGTCATTTTTCTTCCAG	cXp87182725ES	GCTGCATGAAATACAAGTAAACAC
chrX	93580065	93580547	93693409	93693891	-	11	482	2	L1PA3	COLO2T	0	0	LTR9,AluY,L1MB7				cXp93580306FS	GAAACCCCGTCTCTACTAAAAATAC	cXp93580306ES	TAATGCTAGATGACGAGTTAGTGG
chrX	108163831	108163997	108277175	108277341	+	9771	166	12	noL1	COLO2T	0	0	L1M1				cXp108163914FS	CTCTGTCTATCTCTCCCTTCCAAC	cXp108163914ES	AAGGCATCTTTTTCTGTGTAGTTC
chrX	108585785	108586253	108699129	108699597	+	1469	468	5	noL1	COLO2T	0	0	L2a,MIRc		GUCY2F		cXp108586019FS	GGAATGTTGTTTTTGAGTTTTAATC	cXp108586019ES	GTCCTCTTCTCTGTCCACACTAAC
chrX	109741774	109741975	109855118	109855319	+	11	201	2	L1PA3	COLO2T	0	0	L1PA7				cXp109741874FS	TAATCATATGGTTTTTGTCATTGG	cXp109741874ES	ATGATGAGTTCATGTCCTTTGTAG
chrX	122005340	122005749	122177659	122178068	-	1382	409	4	noL1	COLO2T	0	0	MIRb				cXp122005544FS	CATGAGTTCCATCTTTTGTAACTG	cXp122005544ES	ACTCAGAGAAGTAAAGTTGCTTGG
chrX	136937770	136937998	137110104	137110332	+	12705	228	6	noL1	COLO2T	0	0	L1PA16				cXp136937884FS	AAGCAGGTATCATTCTTTCATTTC	cXp136937884ES	AAAAATACAAAAATTAGCCAGGTG
chrX	145058598	145058720	145250906	145251028	-	17	122	3	L1PA4	COLO2T	0	0	L1MA4,L1PA4				cXp145058659FS	ATTTTGCACATACAATTAAGGTCC	cXp145058659ES	ACGGAGGTTAAGAGTATAATGGTG
