0	chr13	31851500	31851501	1000001	0	+	BRCA2; RIP_Alu_chr13_031_01	GTGCACTAACAAGACAGCAA	TAGATTTTGAAGTTGCAAGATG	SINE	Alu	Yc1	ttacctaccccatggactgttgtgaagattaaatgaattagtacatttactacacatagatctatttctcaaaataatgagcattcagatattagccatc<br>tgtaatgtagttggtgatgattatgattattagagtacatttataattggaggatcatttttgccgtagggaaatagaattattaatagtttgaggcacc<br>tgagaatattatgtgagaaactgattacattaaccacacccttaagatgagctctaattttgttgtatttgtcctgtttaaagccatctagttacaatag<br>atggaacttttttgttctgattgctttttattccaatatcttaaatggtcacagggttatttcagtgaagagcagttaagagccttgaataa<font color="green"><u>TCACAGGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCACAGGC</u></font>aaatgttgaatgataagaaacaagctcagatccagttggaaattagg<br>aaggccatggaatctgctgaacaaaaggaacaaggtttatcaagggatgtcacaaccgtgtggaagttgcgtattgtaagctattcaaaaaaagaaaaag<br>attcaggtaagtatgtaaatgctttgtttttatcagttttattaacttaaaaaatgaccttactaacaaaatgattataaatccagataaagtataaagt<br>tagtttatatcagagaagcaaaatccactactaatgcccacaaagagataatataaaagaggatctgtatttattttgaaacaaacatttaaatgataat<br>cacttcttccattgcatctttctcatctaaatgttgaatgataag	Other	<UL><LI>Miki Y, Katagiri T, Kasumi F, Yoshimoto T, Nakamura Y. Mutation analysis in the BRCA2 gene in primary breast cancers. Nat Genet. 1996 Jun;13(2):245-7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8640237">PMID:8640237</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Insertion-specific detection:PCR-SSCP	NA	60	NA	NA	Breast Cancer	exon:CDS:BRCA2:NM_000059:22/27
0	chr6	31574207	31574522	1000002	0	-	AluyMICB; RIP_Alu_chr6_031_01	CTCAGCCCTGCTTTCCCATCT	GCCTTCCAATGCCATTCACAG	SINE	Alu	Yb8	tgcccggagcctgcagactccaacccctcagcttgagagtcaggaccccccacagtccccacagcagcaagaagcaccacctccgggtcccaagaaagga<br>gggccccaactccaggagctgcggcccaggagctgagaacacatcggctccgggagaggacaggacttcagggacctgagatccgcccccagcaccgggg<br>gaagtggctgcctcagcggccgcgctggaacggccttccaatgccattcacaggagcagcccgggaacccaggggcctcagaaggactggtttgtccgaa<br>aagtgagaggagacggaggagaggcgaggagagcaagtgcaggagagaccagaaaatgcgggtgatgcgcgatcccgaggaggactg<font color="green"><u>AAAGGAGACAGGA<br></u></font><font color="red">GGTCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGACTAACACGG<br>TGAAACCCCATCTCTACTAAAAACACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGCGCTTGCAGTGAGCCAAGATCGCGCCACTGCACTACAGCCTAGGCGACAGAGACTCCGTCTCAGAAAGAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGGAGACAGGA</u></font>gatgggaaagcagggctgaggtgtggcgggaacaggcggcgtccagctccctgcactccagacagcacacc<br>tgagccccgccctgaccgcacagcgctcgcggcaacccacccggacccccggaaacgccccgccgctcccgctccgccggggaccgccaggaaccccact<br>caccagcggcggctgccgggggtgcaaaagggaaggcgacggccagaaacagcaggacccggcccagccccatggcccctacgtcgccaccttctcagct<br>gctcagcagtggccaactgaatgaaacccgtgagaagaccccgtcgaaatttagtcacctgcgccccgctcagcgaccgcttatccagtgaaaactgagg<br>cccggaacttagggcc	UCSC	<UL><LI>Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 andHLA-B57 haplotypes. Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15592666">PMID:15592666</a>.</LI><LI>Alu polymorphism within the MICB gene and association with HLA-B alleles. Erratum in:    Immunogenetics 2002 Aug;54(5):365. Immunogenetics. 2002 Feb;53(10-11):975-9. Epub 2002 Jan 26.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11862397">PMID:11862397</a>.</LI><LI>Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK. Polymorphic Alu insertions and their associations with MHC class I alleles andhaplotypes in the northeastern Thais. Ann Hum Genet. 2005 Jul;69(Pt 4):364-72.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15996165">PMID:15996165</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	67	665	336	MHC related	intron:MICB:NM:005931:1/6
0	chr6	31079570	31079571	1000003	0	+	AluyTF; RIP_Alu_chr6_031_02	NA	NA	SINE	Alu	NA	tgcttcagcctcccgagtagctgggattacaggtgcgtgccaccacacccagctaatttgtgtgtgtgtgtgtatttttagtagagatggggtttcacaa<br>tgttggccaggctggtctcgaactcctgacctcaggtgatccacccaccttggactcccaaagtgctgggattacaggcatgagccactgcacccggcct<br>aaaaccactggtttatatactttattttattcttattatttttttaaatttgagatggaatctcactctgtcaccgaggctggagtgcagtggcgcaatc<br>tcggctcactgcaacctctgcttcctaggtttaagagattctcctccctcagcctcccaagtagctgggattataggcgagtgccacca<font color="green"><u>TGCCTGGCTAA<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>TGCCTGGCTAA</u></font>tttttgtatttttagtagagatggggtttcaccactgttgaccaggctagtcttgaactcctaacctcaggtgatccac<br>ccatctcagcctcccaaagtgctgggattagaggcatgacccaccttgcccagccaggtttatatactttaaacaggtgaactatatggtatgtaaatta<br>tagctcaatacagctcttaaatttttaccaggcacattatgtaaataaaaatttttatttcctggccggacatggtggctcacacctgtgatcccagcat<br>tctgggaggctgaggcaggcagatcacttgaggccaggagtttgagaccagcctggccaacatggcaaaaccctgtctctactaaaaatacaaaaattag<br>ccatgcgcgg	Other	<UL><LI>Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 andHLA-B57 haplotypes. Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15592666">PMID:15592666</a>.</LI><LI>Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK. Polymorphic Alu insertions and their associations with MHC class I alleles andhaplotypes in the northeastern Thais. Ann Hum Genet. 2005 Jul;69(Pt 4):364-72.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15996165">PMID:15996165</a>.</LI><LI>Dunn DS, Inoko H, Kulski JK. Dimorphic Alu element located between the TFIIH and CDSN genes within the majorhistocompatibility complex. Electrophoresis. 2003 Aug;24(16):2740-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12929169">PMID:12929169</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	710	426	MHC related	intergenic	
0	chr6	29788448	29788449	1000004	0	-	AluyHF; RIP_Alu_chr6_029_01	GCCTCATGGCCTGAATCTGCCAGTGTCCTT	GTAACTGACCTGCCCTCTATAGTATAGTCT	SINE	Alu	NA	cctttcctcagcaggcctaattgaagcaagtcccctcctatttctcctagagtgtaggtcaaagcaatagatgtgggatgtggtgttgtcagaattcaaa<br>gaggctcaccaggcagtgtgcttccttccttgtagtgaggatgcaagatgcaacactttgtcttttactgtggaggagaaactcctggatgtcctcaacc<br>actggatgaataaaacttcaccacagtggccactcctgaatctctgtgtggtttatcttccatctgctggagagcacgtgttttgccaaggccttcagca<br>tacttcccatctcctactcatccatcctagtcaacatgatgttgttgatgaaataagctgatttaccattctataggatgccag<font color="green"><u>GTTCTTCAGATCTCTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GTTCTTCAGATCTCTT</u></font>aagactatactatagagggcaggtcagttacaataaccctgaggccaattatcaataaatgtgttgtggatccc<br>acatgaatcacttcatgtatagtttttctcattggaatggaaaggaatgcactcaccaaatccacagctgcacactttgtgcctgaggccttatcaatct<br>gctctaccagtgatatccagccagcatggcagctgcaattatgactcctactttttcaagtctgaagtaatctcattcattctttaggccccatcaggct<br>tccttggggacagattgctggattacgtgaagataacaggcaactccaacagcacccctcatccttcagctctctaatggtggtgctacacctaaaatac<br>ctacagtacc	Other	<UL><LI>Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 andHLA-B57 haplotypes. Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15592666">PMID:15592666</a>.</LI><LI>Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK. Polymorphic Alu insertions and their associations with MHC class I alleles andhaplotypes in the northeastern Thais. Ann Hum Genet. 2005 Jul;69(Pt 4):364-72.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15996165">PMID:15996165</a>.</LI><LI>Dunn DS, Naruse T, Inoko H, Kulski JK. The association between HLA-A alleles and young Alu dimorphisms near the HLA-J,-H, and -F genes in workshop cell lines and Japanese and Australian populations. J Mol Evol. 2002 Dec;55(6):718-26.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12486530">PMID:12486530</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	68	605	445	MHC related	intergenic
0	chr6	29926852	29926853	1000005	0	+	AluyHG;1104685373306; RIP_Alu_chr6_029_02	CAGGACAACCAGTAAAGATGCTGG;NA	GCTTCAGTTAACATGCAAGTTTATGCC;NA	SINE	Alu	Yb8	acaaaaagaaagagaacaagtaatcttaactattgattccaccatcgtgcagtgcaatagtcaatggctgcaactgaaaaatcaagcaatgttaataaag<br>aaatggtgctttggtgcttagatatgtgaaagtaaagtcaaaagaatcagctgaaacttgaaagtggttgctccctagaaaggcagaaatagagaagaga<br>ggactctccctagaaaggcagagaagactctcatttttctcagaaagtcctgcacaaatatttactctttccattatgtgcaattgtaacttcgaataaa<br>ataaaaacaaaagcttcagttaacatgcaagtttatgcctaatgacaactttgtttaacaatgataaagggctaaccaaaatat<font color="green"><u>AAAAACACTTAAACAT<br></u></font><font color="red">GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGT<br>CTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAA<br>GCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAACACTTAAACAT</u></font>aaaacagcatgtataaatgtgtatgtgacatcaaccctgaatacaaacttgaaagaatatgtctataaacaactctgg<br>atagatagcccatgaatgaattccccactccagcatctttactggttgtcctgtgagcctaggcagggaggggaccaggacctgactagggtccctaata<br>ctcttgcttccaggcaagtcctgcatgcactcctgctgcaccaagggctcccatccctgccttggtctgtttcataggtgctcccctaactctctgccac<br>cactgccttacctgggtggagctgaggccgccctgaccaagaagagcaccagccatctatgtgccccaaaaccagaaagtcaaaagaaaccttgcaacag<br>ggtcag	Other;Venter	<UL><LI>Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 andHLA-B57 haplotypes. Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15592666">PMID:15592666</a>.</LI><LI>Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK. Polymorphic Alu insertions and their associations with MHC class I alleles andhaplotypes in the northeastern Thais. Ann Hum Genet. 2005 Jul;69(Pt 4):364-72.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15996165">PMID:15996165</a>.</LI><LI>Kulski JK, Martinez P, Longman-Jacobsen N, Wang W, Williamson J, Dawkins RL,Shiina T, Naruse T, Inoko H. The association between HLA-A alleles and an Alu dimorphism near HLA-G. J Mol Evol. 2001 Aug;53(2):114-23.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11479682">PMID:11479682</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA;NA	60;NA	540;NA	218;NA	MHC related;NA	intergenic
0	chrY	15584037	15584336	1000006	0	-	Ya5NBC219; RIP_Alu_chrY_015_01	CCTGGCAACCACCATTCTAC	AAACCTGGAGGGCATTCTTT	SINE	Alu	Ya5	aatagaggtataaagggcaaaaaagtttgggaagtgtttattatgtgacctccatgacagatgtatggagtttccctcctttttcttttttctttttgta<br>tgtacttggtactatttataataaaacagtttatataaaaatattaaaataacaatgaccttctattgtgtatatatatacaacattttctttatccttc<br>atctgttgataaatgcaggttgattccatgtctttaccattgtgaataatgctatcattcagccttaaagaaggaatcctgtcattcgcaacaacatggg<br>taaacctggagggcattcttttaagtgaaataagccagataagtaaagacaaatattgcatgaacttacttatatgtgaaggct<font color="green"><u>AAAAAAGTTCAATGCA<br></u></font><font color="red">GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCG<br>TCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA<br>GGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAAAGTTCAATGCA</u></font>tagaagtagagagtagaatggtggttgccaggggctgggagagggagtggattgggagagggggacatgttgctcaaagcatac<br>aaagtttaagttacagaagcggaataacttttggtgatccactgcacagtattgtgacaatggtgaataatgatgcattgtgtatttcaaaattgttaaa<br>agagattataaacattcttaccactgggacataagtatataaagtgatggaaatgctaattgtcttgattcaatcattccaaagtgtatacacatatcat<br>atcatcacattacacccaataaatgtatatgttttgtttttaccaattaaaaatgaagcaatataaaataagatttaaaaataccaacaacaatattgtt<br>	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	58	445	129	NA	intergenic
0	chr7	107554242	107554548	1000007	0	-	Yb8NBC7; RIP_Alu_chr7_107_01	AGGTTCATCCATGTTGTAGG	CTTAGAAGGGAATCCAGGAG	SINE	Alu	Yb8	gggccttaaccccagatattgtggtgtaattggtatggaatgtgacccgggaagcaggattcaaaaaaaaaaaaaaaacacaaaaaaaaaaaccctggtg<br>attttaatgtgcagtaaagtttggaaagcactgggttatgcccttctcttagaagggaatccaggagcagagcaagtgtgaggggcaaattaatccgttt<br>taggtattggcaagccatcagtggttctcaaccctggctacatctcagaatcccctagggagtgttttatacacattgacacctgggtcccaccccagag<br>attctgccttaattagtttgaggtgggcctgagcactggtagtttaatatctcctcaggtgcatacaatggtatattattcagcctt<font color="green"><u>AAAAAAGAAAGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGTCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAAGAAAGAA</u></font>attctgacacatcctacaacatggatgaacctttaggacattatgctacgtgaaataggccagtcacaaaaaagacaaat<br>attgtgcgattctacatatgttagatacttagagtagtcaaatccatagagacagaaagtagaacggtggctgccaggggctcggggagacatgaagact<br>tcttgtttaatggatacaaagtttcaactttgcaagatgaaaagtgttctggagatcggttgcacacaatgtaaatgtaattaacactactgaagtgtac<br>aggtaaaaatgattaagatggtcaattttatgtaggtgtatttctaccacaattaaaaataaatatttcaaaaaggaagtcattaaaaatatcttctcaa<br>gtgattc	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	605	285	NA	intron:LAMB4:NM:007356:1/34
0	chr11	24749533	24749534	1000008	0	-	Ya5-MLS18; RIP_Alu_chr11_024_01	CTATGATGTGCTATGGAAGGTAGGT	CCTAGTCCTCATAAATTAGTAACCTG	SINE	Alu	Ya5	atgagacttattcactactgggagaacagtacggggaaaactgcccccatgattcaattatctccacctggcccccaccctttgacacgtggggattatt<br>acaaattaaggtgagatttgggtagggacacagccaaaccatgtcagtaattaagcttttatctccaaatttggaggtagtgtatttttcttaattcatg<br>taattcattagtactagtaagaacagacttgaatatggtcttaatatattctcaatatatgcaaagtcctggccctgtgttgtctttgtgaaaaatgtga<br>actatgatgtgctatggaaggtaggtttctaacttcaaggtatttgcatcatgttaagaaaataattctgagaaatgcaaagttaaa<font color="green"><u>AATCACATGAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTACCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AATCACATGAATA</u></font>gatacgatgccatgtatatacataagacactataacatacatgcacacactattgagtactccatcattggtactca<br>caacttgtttctcacttattcaatagccttcaatgatgacctactgtctactaaagctggttatcatggactataactctttattaagaaaggttgcctt<br>taatacacaggttactaatttatgaggactaggttctgcaatgtgaaagctttctatagtatcaaatctatatttcccatgaaaaattaaagcagacaaa<br>taaaaataaacaaaatctgaaaattcattgcggctctaggtcagatatgacttaggctttactattcagacatgatctgtgcaatatgtggatacaggaa<br>tttgttactt	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	62	631	309	NA	intron:LUZP2:NM:001009909:5/12
0	chr1	179124189	179124190	1000009	0	+	Ya5-MLS09; RIP_Alu_chr1_177_01	AGATGTTGGACGTTGGCAGTAAG	TAATCAACTCTGTCCCACATTACCA	SINE	Alu	Ya5	cgttggcagtaagccgcagcaaggcagttaggaaagtacgtgagcctgatgacgcgaaggtgatgcctccatctgtccgcttagtggttattaaattgct<br>gggaaagacctgcctttattttcctatcatcttttccccattactttgcattattcaggaaataattatttattcccaaatgcagttttctaagcagtga<br>ccacaaaaatttcttattctaaggaaaataattaagaaaataaccctatctgtggcattgttttaaaatgtgggatacaaatctggtaagcagatttcag<br>gtcattattgttttcttttaatggtttacatgaaattttcctctcaaaaaacaagtacctcttactgtataacatttgagtttttaaaattgagatagca<br><font color="green"><u>nnnnn</u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAA<br>AACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCNNNNNNNNNN</font><font color="green"><u>nnnn<br>n</u></font>tctgagagaaaaaaagaaagttgaatttgtagctctctcaactacaaaatcaccacacttttctcaaatctaataggaattcagtgtcattacagatac<br>ggtctctagtgaccaggtgaagacaattgaagctttggtagaacttctgcaaaagttaggtaaagaagaataaatccaatttatcagctttgttcatatt<br>ctttttctgagtgatctaaatttttcttgcttgtgatcattagctaagacaaggagtgttaaaggttttctaaatgcaaacacatacgtttctgcatttc<br>agaagtcagtcttgatagtaaatcctacaaactctcaactttctgcattgtattttaagtctatacaatgttagagcacatggtaatgtgggacagagtt<br>g	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	incomplete repeat sequence TSD unavailable	57	1134	813	NA	exon:3UTR:XPR1:NM_004736
0	chr5	77084116	77084437	1000010	0	-	Yb8NBC489; RIP_Alu_chr5_077_01	CACAAGGATGTGGATTTTGCT	TGCCTCAGCCTCCAAAGTAG	SINE	Alu	Yb8	catgactttggtaatctttggtaaggttaatttggtaaatttgatctcaaaattctcttcagtagtttaaaatcttaaggtcatgttttgttaaattaaa<br>acctcatttttttttctcccccactgggaatttgggttcttaggagttaggtagcaggagtgtagaacatgttttcagtgaagtttataaaacacaagga<br>tgtggattttgctaaagaaaatgtaatttttttttaagagttgctttaaaataaagaaaaaattaggccgggtgcggtggctcatacctgtaatccccgc<br>actttgagaggctgaggtggacagattaacttgaagtcagtagtttgagactagcctggccagcatggtgaaactccgtctctatt<font color="green"><u>AAAAATAAGCCGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAGAAAA<br>ACAAAACAAAACAAAACAAAAC</font><font color="green"><u>AAAAATAAGCCGGA</u></font>catggtggcatgtgcctgtaatcccagctactttggaggctgaggcagtaggatcatttgaacc<br>tgggaggcggaggttgcagtgagcggagatcagataaaactaaatggataaaaagaaaaaactaagccagaaaggaaaatcggaaggaaggaaggaaaaa<br>attatacagataaacctaaatggataaaaagaaaaaactaaacaaaagttacctctgagacctgtggttacagagaagatagttaatgtgggggaagggt<br>aaaaccaagtaactattaaaccatatggtataatgtaaacaaattgttccatttcgtaggctggtatcatcagcttcctgagaaacctttactataatgg<br>attgtaaaaataactactttaa	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	591	255	NA	intron:TBCA:NM:004607:1/4
0	chr17	6363100	6363414	1000011	0	+	Yb7AD84; RIP_Alu_chr17_006_01	ATCCAGCCTTGTTTACAAAT	GAGTAAATGCTGGCAAAAAT	SINE	Alu	Yb7	tagaactgattaataaaagtaagagctatttctttgaaaagaccatcgaaataggtaagcctttggcaaaacttactaagaatgagagagaaagagaaag<br>atggagggatggggaaaaacacaaatgaacaatgaggggaatgagaaagaagtcataactttcggaagttaattgttttcaacttgatgaagggcatttc<br>tggaatcctagggcgagggccatgtttgttggtaaaacattggaacgtttccatcacagcactacagtcaggatccaaccagaaagcccgctaccgcttg<br>tcactctgcattgacctggagatcccatgcaatgcagtttaaaaggaaaaataagaaaggagagtaaatgctggcaaaaatataactgttaagatttgta<br><font color="green"><u></u></font><font color="red">GGCCGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCATGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCGTCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u></u></font>ttagctgagcgtggtggcgggcagctgtagtcccagctactgggggactgaggcaggagaatgacgtgaacctgggaggcggggc<br>ttgcagtgagccgagatagcgccactgcactccagcctgggcgacagagtgagactccgtctcagaaaaaaaaaaaaaagatttgtaaacaaggctggat<br>gcagtggctcacacctgtaatcctagcactttgggaggccaagtcgggcagatcacttgaggtcaggagttcgacaccagcctggccaacatggtgaaac<br>cccatctctactaaaaatataaaaagtagccaggcatggtggcgggcgcctgtaatcctggctattcgggaggctgaggtaggagaatcacttgaaccca<br>ggaggcagaggttgc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	NA	NA	NA	intron:PITPNM3:NM:031220:3/20
0	chr17	14358668	14358669	1000012	0	-	Yb7AD3; RIP_Alu_chr17_014_01	AAGAAAAACAACCACCTTTG	TGTATTCAAGGGCAAGAAAT	SINE	Alu	Yb7	aaactcccatcaatcactgtgaaacacagtccagaatgaagaaacaacttaaaaacaggtgtgaacctagcaaccatctcaaggctgaagcacaggcaat<br>tttgcaacacctccctatccccaatccagaatgtctttttaatccggtttacaggctggaattctactaaagacgaactcacagtcaaaaattacaaaac<br>acggaagaaacactccgtcctaaaacttagtcagtagatgagaaaccaaaccataatacacccaaggaagtagaataaatctaaacagaaaattaaatca<br>atatcttaacgtttgttaaaagaaagataaaatgaagaagtggactttgtattcaagggcaagaaattatcatttgaaaaatagtttt<font color="green"><u>AAAAGAAACAAG<br></u></font><font color="red">TATTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG<br>CCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATT<br>GCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAAACAAG</u></font>tagaaatcttgc<br>aggtaaaaaaatagtaaatataatttaaagctcaattgagttttatctaatataatataatgtccatgaaggcaaaggtggttgtttttctttttgtctg<br>ctttgtttattgtttaaaccctaacacttagaacagtacctgatacataatttgcaatcaatatatgtatttttaatggataaataaattagtgggttaa<br>atggtagattggcagagaaaaattagtgagttagaaaatagaactaaataaaccacacagaaaacataccaagagacaaaaacattaaagaaagaaagaa<br>agttaagaggcctggacaagagaaagcaatactgtatcacaacattcatctaataaggattccagaataacaaagt	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	NA	NA	NA	intergenic
0	chr9	41833169	41833170	1000013	0	+	52556; RIP_Alu_chr9_041_01	CACAGGCTCCTCACATTCAGCATG	GGGATGCTGAGGCAGGAGAATCG	SINE	Alu	Ya5	tgttttggggttccaaatagaaagcatcttgaataacgtagattaaataacagtaaatgcaaatgcagacaccaaacatatcctagaggaatcttggaga<br>actttagtcttgctgctttttatttttacatctcatcagcagtactgacgtttcatcaggatcaatggagaattaacaatggagttaatattttttccct<br>ttattagtttggggaaaaggtagatctcataatctggtgtactccttttggaagcttttcatattatcctatcctttatcacaggctcctcacattcagc<br>atgtcctaaaccaaatattttttctcctacccattgactcctccccctatgattctcatcattatcaatggaatttgactt<font color="green"><u>AGAAATCTATTCCTTTCTC<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AGAAATCTATTCCTTTCTC</u></font>ttctccttccctatagtcaatcattaaatcttgtagatattatctcctatcactgatcatttgatataact<br>caccaagtttcactaataataatcaaagtggtaatacatttgacaaactccaaaaaaagataatttttttctttttctttttatatggggtctcgctcta<br>tctctcagtctggagtgcaatggcatgatcttggctcattgcaacttctgcctctggggttcaagcgattctcctgactcagcatcccaagcagctggga<br>ctacaggcatgcgccatcacgcccggctaatgtttttcgtacttttactagagacagggtttcactatattggctaggctggtctcaaattcctgacctc<br>aagcaatctg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr5	174693412	174693413	1000014	0	+	2684;1104685439578; RIP_Alu_chr5_174_01	CAGCGGGCAGAGGTTGCAATGAGC;NA	CTCAAGAGATTCTGGTTCAGAAGTAC;NA	SINE	Alu	Y	ggattttcagattcagctcgtctaagatggggggaaaggggccaggcatggtggttcacgcctgtaatcccagcactttgggaggccaaggcgggtgaat<br>cacctgaggtgaggatttcgagacctgcctggtcaacatggcaaaaccccgtctctactaaaaatataaaaattagccaggtgtgggggcatgcgcctgt<br>agtcccagctacttgggaggctgaggcaggagaactgcttgaacccagcgggcagaggttgcaatgagctgaggtggagccacttcactccagactggca<br>gaaaaagtgagactccgtctcaaaatgaataaataaataaatagataaataaataaaatggggggaaaggggagtgaacttgtt<font color="green"><u>AAAAATGCCAATTTCT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AAAAATGCCAATTTCT</u></font>gagtccaaatctggtacttctgaaccagaatctcttgaggtgggtccagtatctgcatcactaaaaaagctcct<br>caaatgcattttatgaacagattattacacacaaccccgccctccagagctcatggtccagcactggtagcagacaagggagcaaggaccatgcccatgg<br>atatggccatgacaggacagcaatgagaacctatccccagggccagcccaggccagagccaggaaggacctccaagaggaagtgatcttaagcggagcct<br>gaacagggataggcaccaaccaggcagagtgatgagagagtgtctgccatctgccaggggcagaaggagatgtggtacatttggggaaaggaaaagaact<br>ctgagagtcc	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic
0	chr1	120411631	120411632	1000015	0	+	Ya5ACA707; RIP_Alu_chr1_120_01	TCTCTTCACCTATGAAGCAGGAC	CAGAGGTGGAGGGCATAGTT	SINE	Alu	Ya5	attggccacaagccaaacacaggaacactcaaaagtttagaagggtgtgctgcaactggtaccttagcaaaacacaataataaattaagaggattcaaga<br>agccttcactgtagactctaagaagatttaagatttgtaccgagaaacggcttctaaatctcttctactgcattagtttagcatctaaagaacacctgtc<br>taaaaatcaaaatatctaaatcctatcctttgagtcaacttgactaacactcaacttgactacctaaaagctagctaataatcgcagcacctcagcagag<br>cagaggtggagggcatagttttatgcactgagatcctataataaaagaagccctatgtgtcagagtaatcccatttctgatatcatattattt<font color="green"><u>AATACTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AATACTT</u></font>aatttttcaaatcactttacaattatatttattattccctacaattctctaaagcaggttattcctttagtcctgcttcatag<br>gtgaggagactacatatcatgaagattaagttatttaccaaaacaagttaatgatagaccaaggattattaccctcagactgtctcattgatcatactcc<br>tctctatcctaaagctacacttaaagctttcactcaaagaaaaaggaaaagcaaaaacaccatcatatatgctctttattaaatgcttcagaaacaacgg<br>ctctgcttcatcactacaaagcctcctggtccacttctgaaattcttagtgacctagacgtgtacgaaatttgaactttccaagaagtatctagttggtg<br>ctgaacaacc	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	189	NA	intron:NOTCH2:NM:024408:1/34
0	chr7	103643686	103643988	1000016	0	-	Ya5ACA1598; RIP_Alu_chr7_103_01	CCCAGCTGGTTTTTCTAAATG	AATAGGCGAGAGGGAATGGT	SINE	Alu	Ya5	cccacttgggtcatttcttatcccataaagataaaactaaatctataaacctgctccttatttttccatctggcttttcatctgtattccttatttttta<br>tttcactactggcaaaacctaaaatcacctatgtcagaaacctaaatgctagtctctatgactcctccctccatctcttacaaacagctactgagttcta<br>taaaatatacttccaaatttctctcagacttagcccattctcagtatggggtagtaaaaagattaagggctttaggattaaccagatctaagttcaagta<br>attacgaactataaacctttggataaattacctaacccagctggtttttctaaatgtgaaacaagaatggtatctctattataat<font color="green"><u>ATTGTTAAAATTTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGATATCGAGACCATCCCGGCTAAAACGG<br>AGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTATAGTGGCGGGCGCCTGTAGACCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAGGCAGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>ATTGTTAAAATTTAA</u></font>atgggagtaatatatctatcacagtgtcagccacattatgtttaataaactttaattaccattccctctcgcctattcccat<br>tgtttataaaggccatttttttaaattatactttaagttttagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccatgctggtg<br>tgctgcacccattaactcgtcatttagcatgaggtatatctcccaatgctatccctcccccctcccccaaccccacaacagtccccagagtgtgatgttc<br>ccctttctgtgtccatgtgttctcactgttcaattcccacctatgagtgagaacatgcggtgtttggttttttgttcttgcgatagtttactgagaatga<br>tgg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	460	142	NA	intergenic
0	chr14	78416054	78416357	1000017	0	+	Ya5ac2404; RIP_Alu_chr14_078_01	GTCAAGGTTCTGGCAGGAAA	TATTCACTCCCTTTCCCCCT	SINE	Alu	Ya5	ttttaattgggttatttgtttacttgctatgaagttgtttgaattctttatatattttagatattaaccccttatcatagaatgacgcattttaagacaa<br>ggaatgaatcttgtgaaagcttaattccctgtcctaattcctcaccctttacacctccttgcactagacacactcatttacaaactctatacttctactg<br>tattcctatgactggagggtgtttatgagaaaagcaggtgagccttagagtaccagtatatcaatttttttccacagtaggttaagggattcatggaggg<br>accccccctgccccccaaattgatttgccttttgcattagtcaaggttctggcaggaaaactggtgacactctcaaatgggggtaataatat<font color="green"><u>AAGAATTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAATTG</u></font>acccatttacaatagtataggcagggtaagtctgttgtcagggaagccaataaaggatggagaagcacctttttacccattacctctc<br>ttaggcttgaagggggaaagggagtgaatatttattggaacaaagagccagagatgtggctgtaactgggagagggcctcccaataggatctgaaaagtt<br>cagtagtgaaatgcaagcactgcaacccgaggcctggcagggaggagaccaaagaaactgatatcccaatctcacttttcccactccctggctttctgcc<br>aatgactcccatttgatgcagtccagaaagatgggcttcctagagagcagagtagggtggaaaatggattcagagggccatgaagagtatcagagtatca<br>agaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	491	179	NA	intron:NRXN3:NM:004796:7/17
0	chr8	72319395	72319396	1000018	0	+	EYA1; RIP_Alu_chr8_072_01	NA	NA	SINE	Alu	Ya5	agcatcggtcctaatacagtaagagtctgacataacagtctcaaagaaaaaaagaatctgacataacatatgcaagtgttacgaattatgttggacatat<br>cttagtggtgattatgtaactgagaaatatgtggcttctgataatcaacaaagtttaagattcttgaaatcaaattttaatctttactactggtcatgta<br>ggatctaactctgaaaatcaacagccaaagtaaagcaaaatagaaatcccataaaggcaaaacacattgccatattaccaacaaacctctgtctcactat<br>tccaattatacattaaaaaataatatcctatctttattttaaaaccaatcacctattttcagacatgcaaaaatatgtattaaaaattagaac<font color="green"><u>AATAAAT<br>GTGTGTCTG</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AAAAAATAAATGTGTGTCTG</u></font>tctgccaagttgaaaatcatttcttccattcgcagtccaagggaaactgaagtgggtggat<br>cctaaaataagaatatgacaggtgaagaacatgtatacttcaggttacatgaaagagagtgtctcattaagaggaagcaggcattgggagaggctgaaag<br>caagagacacagagagagacttgggcaacagctgcttattttagtgtgcatgacttattctgtgtgcaaacttcagggacttattttataaaaagagccc<br>caaatgttgatggtgctttacacactgaagaaaaaactctttctttacttttttaaaatttaaaatctagggttacttagacatataaaataaaggaaat<br>tcaactttttatgtctatttcag	Other	<UL><LI>Abdelhak S, Kalatzis V, Heilig R, Compain S, Samson D, Vincent C, Levi-Acobas F,Cruaud C, Le Merrer M, Mathieu M, Konig R, Vigneron J, Weissenbach J, Petit C,Weil D. Clustering of mutations responsible for branchio-oto-renal (BOR) syndrome in theeyes absent homologous region (eyaHR) of EYA1. Hum Mol Genet. 1997 Dec;6(13):2247-55.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9361030">PMID:9361030</a>.</LI></UL>	E:Library screening:TE-specific hybridization	NA	NA	NA	NA	Brachio-oto-renal (BOR) syndrome	exon:CDS:EYA1:NM_172060:10/16	
0	chrX	49742082	49742083	1000019	0	+	CLCN5; RIP_Alu_chrX_049_01	TCCATCTTCAATTTGTTTTTTCCTTC	CGTTTTAGCCGGAATGGTCT	SINE	Alu	Ya5	ctttcttgaagccaaagaagagtttgctcataagaccctggcaatggatgtgatgaaaccccggagaaatgatcctttgttgactgtccttactcaggac<br>agtatgactgtggaagatgtagagaccataatcagtgaaaccacttacagtggcttcccagtggtggtatcccgggagtcccaaagacttgtgggctttg<br>tcctccgaagagatctcattatttcaattggtaaggatttcagaaaggggatagtggaatccactgtggaactcaataaatatgcctgaaatgggggaag<br>acagggaaggggggactggttaggagccagaaggatagagctagcacgtccatcttcaatttgttttttccttctgtttgaata<font color="green"><u>GAAAATGCTCGAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATtCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTaGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>G<br>AAAATGCTCGAAAGA</u></font>tagcacttccatcatttatttcacggagcattctcctccattgccaccatacactccacccactctaaagcttcggaacatcctc<br>gatctcagccccttcactgtgactgaccttacacccatggagatcgtagtggatattttccgaaagctgggactgcggcagtgcctggttacacacaacg<br>ggtaagaagtcttgagtgaagtcaaattgaattgtgggagaaagagaatgcagagatagaaagaagtagaaagaagtagaacccagtttaaatgaacatt<br>agtagcacttttaggacttcttgaagctctgagatgaaagtggataggtttttttaaatcataattaatgtaaagggagtttgggaaagaacatgtgtt	Other	<UL><LI>Claverie-Martin F, Gonzalez-Acosta H, Flores C, Anton-Gamero M, Garcia-Nieto V. De novo insertion of an Alu sequence in the coding region of the CLCN5 generesults in Dent's disease. Hum Genet. 2003 Nov;113(6):480-5. Epub 2003 Aug 29.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14569459">PMID:14569459</a>.</LI></UL>	E:Insertion-specific detection:PCR	estimated sizes for PCR products, polyA length unknown	60	650	300	Dent's disease, low-molecular-weight proteinuria, hypercalciuria, nephrocalcinosis, nephrolithiasis	exon:CDS:CLCN5:NM_001127899:14/15
0	chr6	141367415	141367726	1000020	0	-	Yb8NBC576; RIP_Alu_chr6_141_01	AGTCTTAATGGGCGCTGAGA	AGTGCCTCACCCAGTAGCAC	SINE	Alu	Yb8	tttgttcaacagaactgaaattgctttacttaacttttatgcaaatgtaactatatgcaataaaagaaatttaaactcccgaacatattaaatcgctcta<br>gaattttggatttttataactcttaatgaaatccataatgatatacaaaagtatatcccaagggattttaaaatttctaaatgttattgtcacttagaaa<br>atcctactttttaaaaagaccatgccttaattttctgataggatactctttttgagaaatgtctacacaataatagcatgtacactaaggtatgcaaaag<br>taaacaaataagggattattatatatgtttcaataggaacaacaaatatatttttcaaaggccaaaatttctatttataggcaatt<font color="green"><u>AAAAAGTGGATTTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAAAGTGGATTTT</u></font>aagtttgcccactagttagttcccctggtcttcaagagtaagactacctcaatagagagctccactgggaagcc<br>acatgctctcatcactaaaattgtccaaataatgaactgatatattaatataatatgctgaaacaacaaacattcgagaaaacaagagaaatactgctga<br>tttgagacaacaaaattagaacttggatcttttcattaaataaaacattttttagatgatgttttcaacaagatttgtgtaagagagggcagtaagattg<br>ggtacaaaatcataggctaaatatctcttttgattccttgagagagagaagacaggtgtgatgtggatttcatggattttagatcattttctttcttcga<br>cattgactccaa	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	475	149	NA	intergenic
0	chr10	123266987	123266988	1000021	0	+	FGFR2Ya5; RIP_Alu_chr10_123_01	AATCATTCCTGTGTCGTCTAACC	AAAAACCCAGAGAGAAAGAACAG	SINE	Alu	Ya5	gagatcccttcaggttttaagggtgaaatttcccttgatcataaatgtgagtgtgggatctcactgtgtgtgaatttccaaggcagttttcttatccctg<br>agggatcatttttaacattttttatatctttatgcaaggataaaaggggccatttctgataacagaagctgtgttaattttatagcagtcaaccaagaaa<br>agggaaaaaaacccagagagaaagaacagtatatacctggcagaactgtcaaccatgcagagtgaaaggatatcccaatagaattacccgccaagcacgt<br>atattccccagcgtcctcaaaagttacattccgaatatagagaacctcaatctctttgtccgtggtgttaacaccggcggccta<font color="green"><u>GAAAACAAGGGAAGCA<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GAAAACAAGGGAAGCA</u></font>aaagaaaaggctagacgacacaggaatgattgtggagggggctgtggaaccacaaggcgtcgcaccgggggctt<br>cagggggtgctggccactgggagattccgactgcagcccatccacaaagcccacaaccgagagacacggagcaacactgaccagctcacctccacaggcc<br>cgtcaccacaccggcttcacctcctacacatgcacgcaatcaaacgcatggaaaaaatcaacccacagaggtccgttctcttggcctgtgctttggtttg<br>catttaggggtggttttccaaaagtatggtgcccagaaggccaagctggttctggtcctgttggctgcagactcccaccaagaggaaagggtagttctat<br>ctaaattgct	Other	<UL><LI>Oldridge M, Zackai EH, McDonald-McGinn DM, Iseki S, Morriss-Kay GM, Twigg SR,Johnson D, Wall SA, Jiang W, Theda C, Jabs EW, Wilkie AO. De novo alu-element insertions in FGFR2 identify a distinct pathological basisfor Apert syndrome. Am J Hum Genet. 1999 Feb;64(2):446-61.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9973282">PMID:9973282</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	590	225	Apert Syndrome	intron:FGFR2:NM:022970:8/18
0	chr10	123266882	123266883	1000022	0	+	FGFR2Yb8; RIP_Alu_chr10_123_02	AATCATTCCTGTGTCGTCTAACC	AAAAACCCAGAGAGAAAGAACAG	SINE	Alu	Yb8	gagaataaattactttgaattttaccaaagtaatggcaacttgttccttaagagaaagggggatgggctaatttatacattggctcaatgactcactaaa<br>aatatgagatcccttcaggttttaagggtgaaatttcccttgatcataaatgtgagtgtgggatctcactgtgtgtgaatttccaaggcagttttcttat<br>ccctgagggatcatttttaacattttttatatctttatgcaaggataaaaggggccatttctgataacagaagctgtgttaattttatagcagtcaacca<br>agaaaagggaaaaaaacccagagagaaagaacagtatatacctggcagaactgtcaaccatgcagagtgaaaggatatcccaata<font color="green"><u>GAATTACCCGCCAAG<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GAATTACCCGCCAAG</u></font>cacgtatattccccagcgtcctcaaaagttacattccgaatatagagaacctcaatctctttgtccgtggtgtta<br>acaccggcggcctagaaaacaagggaagcaaaagaaaaggctagacgacacaggaatgattgtggagggggctgtggaaccacaaggcgtcgcaccgggg<br>gcttcagggggtgctggccactgggagattccgactgcagcccatccacaaagcccacaaccgagagacacggagcaacactgaccagctcacctccaca<br>ggcccgtcaccacaccggcttcacctcctacacatgcacgcaatcaaacgcatggaaaaaatcaacccacagaggtccgttctcttggcctgtgctttgg<br>tttgcattta	Other	<UL><LI>Oldridge M, Zackai EH, McDonald-McGinn DM, Iseki S, Morriss-Kay GM, Twigg SR,Johnson D, Wall SA, Jiang W, Theda C, Jabs EW, Wilkie AO. De novo alu-element insertions in FGFR2 identify a distinct pathological basisfor Apert syndrome. Am J Hum Genet. 1999 Feb;64(2):446-61.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9973282">PMID:9973282</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	575	225	Apert Syndrome	exon:CDS:FGFR2:NM_000141:8/18
0	chr17	26687655	26687813	1000023	0	+	NF1; RIP_Alu_chr17_026_01	CAGATCTGCTTGATGTTGTACTAAG	TGACAGCAGCTGACTTGACTTTGC	SINE	Alu	Ya5	tctcttaatctctgaaggagtcaaatgaatatactcatcctttcctggatattttataataaattgtatttactgacaggcctgtaaataaaatctagta<br>tttttgaggcctcaggtaaaatagaattttcatattgattaggctgttccaatgaatattttttaattaaaaattaaattggtagagtgattaaaaacat<br>gttattttccttcttcaactagattacagatctgcttgatgttgtactagacagtttcatcaaaaccagtgcaacaggtggcttgggatcaataaaagct<br>gaggtgatggcagatactgctgtagctttggcttctggaaatgtgaaattggtttcaagcaaggtaatcacttttcttttgccttctgtactatagcata<br>tctgttttatcatcaggaggttttttgttttgtaattacttttaaattaaactgaacttttttgtgctaaaactttgagt<font color="green"><u>nnnnn</u></font><font color="red">GGCCGGGCGCGGTGG<br>CTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCT<br>ACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCG<br>GAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGACACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>nnnnn</u></font>cccatgtttttttttttaaaaaaaaaaaatcctgcttctttacaggttattggaaggatgtgcaaaataattgacaagacatgcttat<br>ctccaactcctactttagaacaacatcttatgtgggatgatattgctattttagcacgctacatgctgatgctgtccttcaacaattcccttgatgtggc<br>agctcatcttccctacctcttccacgttgttactttcttagtagccacaggtccgctctcccttagagcttccacacatggactggtcattaatatcatt<br>cactctctgtgtacttgttcacagcttcattttagtggtaagttctaggaaaggaatttgtgtttaccagttcctttctccattttacttcacctgatca<br>atatagattatcttatttatgtttgtgctctaacaccaagttgctaatttaagcctccagtaatgacatgaaatattaccaaaaagaaaata	UCSC	<UL><LI>Wallace MR, Andersen LB, Saulino AM, Gregory PE, Glover TW, Collins FS. A de novo Alu insertion results in neurofibromatosis type 1. Nature. 1991 Oct 31;353(6347):864-6.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1719426">PMID:1719426</a>.</LI></UL>	E:Insertion-specific detection:PCR	precise insertion position unknown TSD unavailable	65	800	480	Neurofibromatosis	exon:CDS:NF1:NM_001042492:42/58
0	chr11	82271187	82271484	1000024	0	-	Ya5ac2084; RIP_Alu_chr11_082_01	TCATGGAGTTGAGGCCTTTT	CACTACCTGGGAGGACCAAA	SINE	Alu	Ya5	ctactctggatcgcattgctttatttatttatatgttggtatcctgttagactgtgagcagcctgagtgctaggactccacccatcagtgtatctcagtg<br>tgtgccttcatcagctcttcagacaaataactggctcaagctgaagttattcttctaccattagtacttggttttgtcaacagtctgccagtattgtact<br>accaatatggcatagacactggccagtgggaacagaagctagtcatggagttgaggccttttgaagtatcatcgttctttaggtctggagatctaaaaaa<br>gggtctgtggcagtagggctgtgtgtgtgtgtgtgtgtgttgcacaggtagtttttctccaactcatatggaaatatttcagtatttt<font color="green"><u>AAGAACTGGCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>GAACTGGCTC</u></font>agtatcagctttggtcctcccaggtagtgagtgcctacagaatgggattctgtctgtactgcttagtgtccctaatatggatatctcagc<br>acaactcaggtgtccaaaacaggtttaacttctatagcaaatgttaatgttattacataacacttctttttaaaacttctctgaatttttcacattacta<br>tgaatactactgcagttgaccctagaacaacatgggtttgaactgcacgtgtccacttataaacgttttttttcaatacatctcttctgtctcccctttc<br>acctcctccacttcttctgcctctgccacccctgagacagcaagaccaacccctcctctttctcctcctcctgttcagccttctcaaagtgaagatga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	497	180	NA	intron:PRCP:NM:199418:2/10
0	chr12	57344522	57344826	1000025	0	-	Ya5_518; RIP_Alu_chr12_057_01	GCAGTAAAGGAGCAATTATCACAG	CCGGAATAATGTAAAATCACAGTGC	SINE	Alu	Ya5	gtaagagcaaagggtagggaaagatgaatcaataacagcatcaaactcacagatgcaacagctgaagtggcatggggctgcaaataacagagcatcctgt<br>agaaggaatatggtctagaaagtgagggctggttatcagagggagatatgaaagaagagagagtggggttctgcggggcagagagagatactgtggaaca<br>aacttaaacttttcactaatagtacaaaagtagtttattttaaattacaatggaaatttatatttgtaaattaaaatagtgctatgtaaaaatatactta<br>gaaggtcatatatgctttaagagaaaaaaaaacatattttctaggaactataaattaccggaataatgtaaaatcacagtgcttc<font color="green"><u>AAAGAAGCAAATGTC<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAATATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAGAAGCAAATGTC</u></font>tttagatttgctcatttccactttaaacatttgttttcctagaacatgtgtcctataaataatctaacacccaatataaa<br>atttggcaagaaatatagcccattaaatttatcctattgtgctttctttatctgtcacatattttaatgtggttttattaactgtgataattgctccttt<br>actgctaatgatagtatgatactgttaacaatcaacttccaaggtgatagtctttatgatctgcacctccctcagtaattgcactaaaactgtgtgcctg<br>actcttgagttaaaggacacttgggtttcttgtacttgagtcaatttggtctcctttccagatggtaaattaaggactatgctatcctcttactccaaat<br>ttcca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	548	228	NA	intergenic
0	chr12	90989647	90989952	1000026	0	+	Ya5ac2221; RIP_Alu_chr12_090_01	ACAGCGGGTAGGGAAACTCT	TGGCTACATATGGGATGTGG	SINE	Alu	Ya5	agtagattttctcctggggaaaccagtagcaatttatcttgttcttgctctactgctggcatacaggaggttgggcatttaatagacagtcatctgccag<br>taggaggtaataattgttttttagattaaaaacaaatgaaatatgaagggagttactgccatataggaggaattggagccaatgctcaagtagtcttgtc<br>tagagccaatgtaagaacttctgttggaaaactacacttttatgtatatgtatgagtttctgcatgtgcatgcatatgagtgctttagcgtcttgtagat<br>gtgtgcatgacagcgggtagggaaactctggaaaaatagccagtgaagacccaaagcaactcttattttctacactcacaagtactat<font color="green"><u>AAGAGTTGGATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTTCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAGTTGGATC</u></font>aatttcttgtgcttaaaattgggttttattttgtttatcttttccacatcccatatgtagccattttctaggaaaaaattac<br>actgatagcaacaaaataatttttcaaaatgtatataagaaacagtgcaatgtaagacatgtagaagagagccagaatatgccttggtggattgatgaga<br>atgctaagcaacgaaagacattcatgctgcaatctatacaactaagcagcctgaaacctcctccattattcaagtttgaattcagaaagaagacaatggc<br>cttattcagctccagtcaatcctagtgttatgcattgaattatttccccctaaaagttgttgacatgctaactcccaatacctgcaaatgtaactttact<br>tgaaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	472	154	NA	intergenic
0	chr14	38087735	38088034	1000027	0	+	Ya5ac2370; RIP_Alu_chr14_038_01	ATTGCTCTAGCCACGCACTT	AAAGAAACTGACGGGGTCCT	SINE	Alu	Ya5	gtatctaagacatactttatagaggctacaatttgaataacaggaacaaagaagaaataactcctttgtccaccttcaaaacttttgatacactgcaaga<br>gcctgtaatttgtaaaccatttaatctcacagggggaacctaggattctcagagtccgctccatcagggcaactatttacagcagactttcctcagatat<br>acttgttcactttgtgctactccctttgatgtaggtataattaagctgattgcagccccagttggccactatgttcaaagaaaaaacccagtagcaattc<br>aaaatgattgctctagccacgcacttttctctattccttgcgtaccttgaggatggttgtatagccccaaggcacttgctgtt<font color="green"><u>AATATTAGGGAAGGTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AATATTAGGGAAGGTTT</u></font>tattatttcgtaaatctccatcagccccttcctctctcttcgtagtggctttttctaggaccccgtcagtttcttttgacagt<br>catcaagttgcttaggatgcagaaaagcctgcctgccatcattccccacatctgttcttgtaactacattctcttccacatgtgtttcctctctgaggca<br>gtcgagttgctgaagctcagtgagctgaggtggattctaaattacgtccagacctataagtcaactaaataaaggaaatgtaagggggaagaaagtaaat<br>cttcaattcttcttagtaatttttaacttcagagaaataaaagaacacattgtgataagtttgacatcactagatgaaaaaaggccataagatatatgtt<br>	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	487	170	NA	intergenic
0	chr16	26290912	26291233	1000028	0	+	Ya5_464; RIP_Alu_chr16_026_01	TTGGTCAATATCGCTCATGG	TGGGAGTTAGGAAAAACTTGG	SINE	Alu	Ya5	ggaggggagggaggaaggagacaaaagacaggaagtggggagagagagaggagaggagaggaaagaggggaaaagatgaggaaaggagagagagagaaaa<br>aataaatagctttttttgtttgtataatctgacatcttgtagacagttttttagagagatcaattctgtccctttgagttttattttaaaaattagagaa<br>ataggctatttggctagtctgcaagacttgtcatagcctctgggtttactgggcgattggcaggccatagtgtaaataatgacttagaactactggttca<br>acttctcttcaaaaataaggaactaggatccaaggtgaggcccagtgacatacagtgacttggtcaatatcgctcatgggaaggcagtc<font color="green"><u>AAAGCTGTAGG<br></u></font><font color="red">TAGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGCTGTAGG</u></font>taggaccaagtttttcctaactcccagttctcttcatcacatgatagaatcaggagagagctcttct<br>cctctgtcacccatcagtcacctctgaccttgctatttattcccaagagtcagagaggcagagtgtaccctctgccttcggagatatcaaagtcatcaaa<br>cctggacaagtgaaagctttggctgaccaggggcaggggaggttgggtgtatctggctgcttacaattcagaagttgacatcagctcagctgcttgcatg<br>ctgtgctaaatctcaacgtgtatagactgaaaatcacccagttactttgcgaaaacagcagtttaataagattaggaggagttgagaacacttgttacgt<br>tcaaggcaataaaatgaaaagc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	57	400	67	NA	intergenic
0	chr19	35709190	35709490	1000029	0	+	Ya5NBC349; RIP_Alu_chr19_035_01	TCAAGAACTGTGGGCCAAAT	GGATGTTGTCACAGCAGCAT	SINE	Alu	Ya5	tctcaccaaggccaggttcttaggtgaccctgctcagcgacacgaatggtctctggggtgggctccagcccacagtccctgtcccacagagaagagacag<br>gtgtgcagagcccaaagagacatgtcacacctgatgtcttgtcccaggtcaattctgtgaatcccaaaccttgcccgctgcatccagggttgcagtctct<br>agcctggggactgagagtacctgcccacagccagcccatagccaccccttggggccttggcaagatgtggcggtctgcggatgacaggggatgttgtcac<br>agcagcatcacatggtgccagagggcagagaccccatgggtggcctaatccccagcagggagtttcacagactccaccaacaatt<font color="green"><u>AAGAACAGGTTCAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAACGGGTTCAGG</u></font>gcttgggaaaaccagaaacacatttggcccacagttcttgatcttgaagccctggtatattttaaggaaaatgtaatccatgtg<br>tttctgattcattttcacttaactcatcaaaatgttgctttagagaaggtatttgaaatcctagtgtcttatatttctccctttttctttttttgagacg<br>gattttcactctgtcacccaggctggagtgcagtggtgtgaactcggctcgctgcagcctccgcctcctgggttcaagcgattctcttatctcagcctcc<br>cgaatagccgggactacaggtgcctgccaccacacctggctaatttttgtattcttagtagagatggggtttcaccatattggccaggttggtctcgaac<br>t	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	469	53	NA	intron:ZNF536:NM:014717:2/5
0	chr20	31798801	31799110	1000030	0	+	Ya5ac2698; RIP_Alu_chr20_031_01	GGTGTCATTTCTGCCATCACTAT	CTAGCAAAACTCACAGTCAAGCA	SINE	Alu	Ya5	tgaagttgagatgcctgccaacctttaaacggaggcagtgacaaagtagacaatgtagatttccaagtccggaggccagagcagaggacaaggctggagg<br>catctggggaagcttccagagtcctcagccgaaaacacggttctggagcaaagacaccctggatagggggctcatagaaagactaaaggatccctcataa<br>aggaggctgggcatatctcaggatgccaggtcaaggggtcagattttcaactggcttccttttctttccttatccctttagaacattatcttcattcatt<br>gtataggtgtcatttctgccatcactatgaaagcattcaccccagacccataggacatatagactgaaacaggcatcttctggcataaa<font color="green"><u>ACAGTCATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GGACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAC</font><font color="green"><u>ACAGTCATTTT</u></font>tctcactgcttgactgtgagttttgctagtagaaaatattcccctcaccatctcttacctttttttttttttttttgag<br>acaaggtcttactgtcgctcaggctggccttggctcactgcaacctccatctgccaggttcaagtgattctcctgcctcagcctcctgagtagctgggac<br>tacagacacccgccaccatgcccagctaatttttgtatttttattggagatggggtttcactgttggccaggctggtctcgaactcctgacctcaagtga<br>tccgcctgtcttggcctcccaaagtgctggaattacaggcatgagccaccgtgccacaccagatattcttcttgacctaagatacttgtggacttcatgt<br>ggacatgtgt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	447	127	NA	intron:ZNF341:NM:032819:3/15
0	chr10	35633229	35633545	1000031	0	-	Ya5_541; pAlu10-35743364; RIP_Alu_chr10_035_01	GGATTGGGAAAGGTGTTGAA	TGGCTGAGAAAACCTGCAAT	SINE	Alu	Ya5	catgacacttgtatattaggctcctaaatactgtgcaacacggcaacagtgatgagaatcactactcttagaccacacttgaattagtgtctcttccatc<br>cacccacgttttttggctcttcttcctctgatctcccctgccttgaggctcagcactccccctaacaccctagtggttctcaacctgggcaattatgccc<br>ccaggagacatttttggttgttgcaactaggggatgccactggcatgtagtgggtagaggctagggattctgctaaacatcctacaaggcacaggacagc<br>cccccaaaacaaaaatgatctagctccacatgccaatagtactgtggctgagaaaacctgcaatatgctaaccaaaccacttttaat<font color="green"><u>TAAAAGGAGAAAA<br></u></font><font color="red">AAGGCCGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAATAAAAAA<br>TAAAAAAAAAAAAAAAA</font><font color="green"><u>TAAAAGGAGAAAA</u></font>aagccttttcaagatcttacaacggctcttattagattataaattgtaacctcctcagccttactttcaa<br>cacctttcccaatccatttctaacctacctgtcacctgaactgagcaaacctatgctgagctcccccatgtgcaggaggtgcaaagctactgaaagacga<br>agaggggttggtgctttccagaagcccattcacgggtgcaggagacggagaaactggagcatgtggctagcacccagcaggtatcaggaatggtctttcc<br>tttcttcctaattagctctaattccaggctgactgtgatgggtggataaagagtggtggatcttagtgttttccccacatcgtaatctgtgctcttgttt<br>gtcttttaatctattag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	471	141	NA	intron:CCNY:NM:181698:3/12
0	chr10	55628261	55628441	1000032	0	-	Ya5ac1925; RIP_Alu_chr10_055_01	TCGGGGAAAGAGGAAAAGTT	GCAGGAATCCTCTGCTTCAC	SINE	Alu	Ya5	tagatctgatttgaattttatttctcttttcattgaatcactttgttttcatcatgcaaataatacatatttttactggcttcacagctgctggtaaaaa<br>ctaatgatatatgatctgaatgtaaaatgtaagcttatttcattattatacaattttgcttttttcatcctcctcaccacctatatattgtgtgtgtttg<br>ggtgtgttcatcggggaaagaggaaaagttgtagaatttatgacttttcatagcatttttatgtcctggatatgacatgctggttattggctcacgcctg<br>taatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcccggctaaaacggtgaaaccccgtctctactaaa<font color="green"><u>AATA<br></u></font><font color="red">CAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAACTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGT<br>GAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTTTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AATA</u></font>attagatattaaaga<br>aagatggagagatacaagaaagagagaaaaaaatctgttcaaaatgccttgcatgtatgaactgctctgagcctgtaagagtgaagcagaggattcctgc<br>ttaaatcatttcaaggtcattgggttggaagcccatatggaccaattagttttaaacagtgaaaaaacaatgttttccaggcgtagactctacctcttgc<br>cctggtcagctgtctccagaaagcctgatgtgtgtcacaggggtaactcctaaaagaacatccatcgctcggcacaaattaatcacaactgctggatgca<br>gaaagacctcatccatactgatggtattagcagcatgcctggttatgtgagatggatacataatcccagacaggaccaaac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	490	195	NA	intron:PCDH15:NM:033056:10/33
0	chr10	54688751	54688976	1000033	0	-	Ya5ac1926; RIP_Alu_chr10_054_01	TTTTGTGAAGAAGCCCTGGT	GCAGAATAAATGCTGCAACG	SINE	Alu	Ya5	caacccattaaatcagccttactaattgcattatgtctggacatatttatatatcacctatcttcactaggcatcgtagagtacaactttatataaagta<br>cctttctatatactatttaatgctttcaagtcctggattcagaattgtcttataccaaaatcagagccacactttcttatttcacatttgtttctaaaag<br>ttttccactatgtgttctacttttcatttattcatcttcttgttacctgattatacttttaggtacttccttactttctggcacaataaaaagttccatg<br>tttatcttgtattttcttctcccttgtccctgaatgagtcattttgtgaagaagccctggtttcttttaacatcgagtgacatttat<font color="green"><u>AAAACAAGATCTG<br></u></font><font color="red">GACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGG<br>CTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCT<br>CAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACAAGATCTG</u></font>agtgctagttgtaggtcttttcagtggacagatttagtaaatacacatatttgtccatgaa<br>cacagatatacccttatatctgtctctttgtctatcaaccatctatccatctttctctattcatctatctatcatacaactaggagttcactttgatacc<br>tctaaatttgattgaacgttgcagcatttattctgccttgttgatttctacatttgtaaggcccttctttgaaagtgagaaacctggcaactaagatccc<br>actattctcaatacatttatacttactggctcagtaccagtgtatgtacttacacttctagtttgaattgcccaaagttcatatcggacacactgtcccc<br>caatgatctccacctggtgggtctca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	495	256	NA	intergenic
0	chr10	26807964	26808253	1000034	0	+	Ya5ac1939; pAlu10-26918096; RIP_Alu_chr10_026_01	GCCAAAAAGGAAATCACAATG	GTCTCCTATCCCAGCCATGA	SINE	Alu	Ya5	aggaaaagaaagaggcacttgggctggagatgtgctttgggggttggcagcatatgtatggtatttaaagccctaagagcaccaagggagtgagtgtaga<br>ccaaggctgaagagaaatgaggtcaggaaggatgaggaggaacccacagagaaggctggaaggagaagctggtaaggtagatagggatggagccagaatc<br>tctggggcctgaatcttacacaattttgggaggctcccttttaaaaagaagggatttttttctacttggggtgggagatgaagtctccctttaaaaaaat<br>acaaaattgtcaatgaaaaattaaggacaagagggaatatttatttagagccaaaaaggaaatcacaatgaatgaccaattttt<font color="green"><u>AAAAATTGACATATAT<br></u></font><font color="red">TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGGTGAAACCCCGTCTCTA<br>CTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGG<br>AGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTGAC<br>ATATAT</u></font>aacaaacatgtacatgtacccctgaacctaaaataattttttaaataaaataaagaaaaatatttaaaatcatggctgggataggagacagcaa<br>taatttataaagtgtataatttataaagtgtatttgttattaatcactagagatcactgaacccaaaaggacttaactgtgatactttactgtgaaaaaa<br>tagttttcactgcctaaaatgaaactctttattttacagcattattagaatatgcaaacatttgaaaaaaaacaataaaaataaaaattgacacgtaagt<br>gtatatatctaaaaagcaacattgtaatctttatgatgattaaataacttgctgatgtatttttgctacgcttttggctgcatattcttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	446	140	NA	intron:APBB1IP:NM:019043:2/15
0	chr10	20707266	20707571	1000035	0	+	Ya5ac1952; RIP_Alu_chr10_020_01	AGCCCCAGATAAACCCACTT	CAAATTTCACATACACAATGCAA	SINE	Alu	Ya5	atagatatacaattttttgtttcaatatgaaatcatagtgtaatcttttaaaagacattttaagtggcaaccatatatgcatctatgaccaactttaccc<br>aagtacaggaaatggcatatggtgacgctatctggccagcagcttttgtgaagcactctagattgtgtaaagtactacaacctttgagaagttaacatgc<br>aaaaaatacgtgcatctcgtgcatctcagtagtgtggccaagtgtcgtcgtttacccaggattgatgaggttctcagaacacgggacttttagcacaact<br>aggaagccccagataaacccacttgagttggtctctgtaatcagaatcaattcagtatgattggtcaaaggtacaaacttttagtt<font color="green"><u>AAAAGATTAGTAAG<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAGATTAGTAAG</u></font>ttctggggatgtaatgtatatcatgacaactccagttagtaacattgcattgtgtatttgaaatttgtaacaagagtgta<br>tatatatatatttttttgtttgtttgtttgtttgagacggagtctcaccctgtctcccaggctgaagtgcaatggcgccatatcgactcactgcaacctc<br>cacctcctgggttgaagtgattctcctgcctcggcctcccgagtagctgggattacaggcgcccaccatcatgcccggctaatttctgtatttttagtag<br>agacagggtttcgccatgttggccaggctggtcttgaactcctgacctcaagtcatccgcctgccttggcctcccaaagtgttgggattacaagtgtgag<br>ctacca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	483	163	NA	intergenic
0	chr10	49948022	49948340	1000036	0	+	Ya5ac1960; RIP_Alu_chr10_049_01	TGAGATGTGCTGGAGTGTGAG	CAAAAAGGTAAAAAGCAACAGG	SINE	Alu	Ya5	gaaaggaccagggtgcaccccttactacacacagccctgtttccaccatgtcaggccccagagcccagccccctccaggaatgagtcctgcctggacaac<br>cttccaggcctacagttataaggacaggaccacctctatcaccaagtgggaagctgaggagaagcaagtcctccacctcctgcccctttggcacaaaaag<br>ccacttagaggccacatttctcacatgcaaaggaccagcatgcacagctgtctgtccagggtcccatagtcccacatggcagccatgagctccaggtggc<br>tatcaagtcccaaaatgtgatgaatccaaaatgagatgtgctggagtgtgagatcacaccagatgataaagccacaccttagcataaaaaaagaa<font color="green"><u>ATATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATCAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAGAAATATGAC</font><font color="green"><u>ATATC</u></font>tcattcatcatctttatttgttgatactgttggaatgatattccagatacagtgggttaagtaaaaatattaaaat<br>taattttacctgttgctttttacctttttgaatgtgactactaaaaaaaaaaatggtcagatcacctgtatggctgacatatttctagggggcatcatga<br>aaagggccttcacttgtctgagcagctgggctgccagtggtgaaggggcaccccaggaaggatgagccctgcacatgagaaggtgcccctgcagctgccc<br>atgccaggaacggcagtcactcagcacagtgaaagtacctcccacagccccaagaggtaagaggaaccttcattccaatgttagagaagagtcaggagtt<br>cagaagacccactttataa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	499	182	NA	intron:C10orf72:NM:001031746:4/8
0	chr10	57372054	57372380	1000037	0	-	Ya5ac1972; Ya5-MLS07; RIP_Alu_chr10_057_01	TTGAGTGGAAGGCTTTGTCA	TGACAGTATGGGCGTAGGGT	SINE	Alu	Ya5	acttacattaacttgttcgagattttaacttaaaaacttttctgaggcttgagtttatgtgaatttagttttactaaactttttggaggaggctatcttc<br>agaatagcttcttctacctcacatacttcctcttctgtggttttctcctggctctgatgtcctgcctgccccactccctacccacactcttttgatcttt<br>acctccattctccccattatgctcaatttgtgtaccactctctttgtttttcctccgtgtagtgtggaccttatctcataaaggtctttgagtggaaggc<br>tttgtcaattttggctttaataaaataaataattcaaaaaataaaaaacaaaaaatcccccacaaagattggccaacctacattaat<font color="green"><u>AACCATGAAATTA<br></u></font><font color="red">GAATAAGTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGG<br>CTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGA<br>GAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACCATGAAATTA</u></font>gaataagtcaaggatcagtttgctcagaccctacgcccatactgtcagtcttttctgact<br>aaggcatttttagataacaaaaatagtaaggacatgtagaacaaatcattttacacattcatgaattatcagtcatttgttaaactaatggacagctact<br>aaatttgaaaactacaaactatagcagaccactacttttaaattcaaatatttcttgcattaaaaagaaagaaaaatctattgaattagaaaaaaaatgt<br>tagattgaggttcttcttttgtaattgaataattttaattagataatgtttctaagtaaaaactttaagtgtgtttgctgatttggtattactttaaaag<br>tacagaaggaaaagtacagaaggaaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	167	NA	intergenic
0	chr10	65938806	65939098	1000038	0	-	Ya5ac1975; RIP_Alu_chr10_065_01	GCTGCTTAGCATTCTTCCCA	TGGATAATTTCTGTTCCTACTTTCG	SINE	Alu	Ya5	taaccagttaaaatgaaaccagagaatgctatactaaataatatagctttgataacatttaatataattttttgttagcttatcaatcaaaggttttaga<br>caaccacattatcaacatattagttgtttctttgaatttgccaggaaacttgaattttccttgaccacatgctgaaataatttctgttcatggaaattag<br>ttggctttagatgttgtttggttgtaaaattatggtttaccattatttttgtttgtttatagttaattagcattttcattagctgcttagcattcttccc<br>actacagaagtgtttctgtaaattcttcaaaacaagcaactaagaaagagaagaatgatatttcaacaaatacatatacccttt<font color="green"><u>AAAACTGTATAAAACG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAACTG<br>TATAAAACG</u></font>aaagtaggaacagaaattatccaagttaaaaaacagatgattcatctggacactgagatatatgattacatttattgaaaacacttcaaaa<br>aaaagtacaacttattgaacaaagttattgcaaggtcacttattactggagataagatcagcgttaaaacctacaataaaatctaaatttaaagacttcc<br>taaactggggtttctacaattttccttaatgatttttttaaatgtaaaactcttattttctaacttacatttctcttgttgcaattattttggagtcaga<br>tttagaatatattaaaatatttagtcgtagcaactttttttcagaggtcttatgtttacatctaaactggatctgaagagggttttgtgtgtt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	451	142	NA	intergenic
0	chr10	69942117	69942424	1000039	0	+	Ya5ac1980; RIP_Alu_chr10_069_01	TACACCCCAAGACACTGGGT	TGCAACTATCTTCATATCCAGGAG	SINE	Alu	Ya5	tcaagcaattctcctgcctcagcctccttagtagctgggattacaggtgtgcgccaccaagcctggataatttttgtatttttagtagagacggggcttc<br>accatattggctaggcttacacacgtttaattttgattctttgtatacatgagcaataaactgtgtgaggaagaattcattgcagaggcagggcacagtg<br>gctcatgccagtaatcaaagcactttgggaggccaagacaggtgggtcagacagcttgagcccaaaagtttgagaccagccttggcaacatagcaagacc<br>ttgtctctccaaatatttaagacaccctgtcacaaataaataaataaatacataaatacataaattagtctaatagaaactaaatt<font color="green"><u>AAAGATAAATGATA<br></u></font><font color="red">TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAGATAAATGATA</u></font>attcactcctggatatgaagatagttgcaatttttctatttcaaagtacagacttcctcactattaaaaatgttggtt<br>ggggctggaagtggtggctcatgcctataatcccagcactttgggaggctgaggcggatggatcaactgaggtcaggagttcgagaccagcctgaccaac<br>atagtgaaaccccatctctactaaacatacaaaaaattagctgggcgtggtggcgggtgcccgtaatcccagccactagggaggctgaggcaggagaatt<br>gcttgaacctgggaggcggagtttgcagcgagttgagattgcaccattgcactccagcctaggccacaagagagagactccgtctgataaacaaaacaaa<br>acaaaatg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	1130	808	NA	intron:SLC25A16:NM:152707:2/9
0	chr10	71280181	71280182	1000040	0	+	Ya5ac1986; pAlu10-71502576;1104685137744; RIP_Alu_chr10_071_01	AGCAAAAGGCAGATTCTGGA;NA	AGGCAGTTTAACGTGTGGCT;NA	SINE	Alu	Ya5	gaacacatagtgacggtgacagacattagctggtggctgccctggagccataaaactcccactgggtgagctggaggtggagggaggcgctgatcacttt<br>ggttctcaactacagcaaaggcagacgagatccaaatgtccatggatgagatctaaatgtccacatttgtaaaatgaatttgtgcattaactcattaaat<br>cactgagtttggaactctaggtaagtttagactgtgcgacacagtacgatacagggcaaaaggcagattctggactccacaagatctgggttcaaatccc<br>agctctggcatcaagaagcttcaggaagttgggttctttcaaagcctcggccctgtctctagtgggatgaggataacaatcctctt<font color="green"><u>AAGAGACATCAGGA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>AGACATCAGGA</u></font>gaggacctggagccacacgttaaactgcctggcatggggtgacactcgagaaagagggtttcttaccccatggcacatgtctaatgcag<br>gggccttccagcggcctcctgcgtctggaggaagccacctactgagaggtctctgccagcctgctcagggtactgcttttcttagtgctgtcttttacca<br>atgggcaaagggcgggctgttgtccttgtgatgctgaggggggctgaggcagatcaggttccctgggaagctgactgtcagccagcagactctacataca<br>caccattgaaaggggaggggaagagagagaagggaaaggcaacagaccgggcaaaggaagatgatgagctgtgccaactctcagtgatggcctcagc	Other;Venter	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	55;NA	487;NA	176;NA	NA;NA	intron:COL13A1:NM:080807:2/37
0	chr10	74468392	74468689	1000041	0	-	20268; Ya5ac1988; RIP_Alu_chr10_074_01	TGGCAAGTCATCTCTGTCTTTT	TTCCATTTCTCTGATCTACCCAA	SINE	Alu	Ya5	acaaacaaacccataaaacaaaaaaggcttttttttttttaagaggcagggtcttgctctgtcatctaggcctaagtccagtggcatgatcatagctcac<br>tgctccttccaactcctgggcagaagtgatcttcctacctcagtctcccgagtagctgggaatacaggtgctcaccaccatgcttggataatttttaatt<br>ttttattttgtagagacagggtttcactatattgcctaggctggtctcaaactcccgggctcaagtgatcctcccagagtattggtattacaggcgcgag<br>ccattgcatccagccaaaaaaggctttacttatgttactgacaatctgttaacttttggcaagtcatctctgtcttttccactatt<font color="green"><u>AAAAAGCAAATAAA<br></u></font><font color="red">GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAAGCAAATAAA</u></font>aaccctaagaatttactacagcttgtaaatgaaaaagctaataattttgggtagatcagagaaatggaatttgaagtttttgaaatgt<br>aaacattcagttttgtgctctgaaaagatagttaagtgaactcataaagtctagttaaagtaatataaataatgacctatgcaaataaacaataatctgt<br>ttagagtggtagaaaagcttttttgattctggtgggaaagtgattttcatttttttactctgaagtgatgatttcctacaatacggtatttatgatatca<br>tgaatgtaacatgatatatatgtatatgtgtgtatttatttatttattttattttactttattttctttcggagacagggtctcactctgtcgcccag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	425	113	NA	intron:P4HA1:NM:000917:9/15
0	chr10	85591497	85591801	1000042	0	-	Ya5ac1997; RIP_Alu_chr10_085_01	GTTTGTGCTTCAGTGGCCTT	CAGGTGGCATTACCACTCCT	SINE	Alu	Ya5	cagagtgtaaaatctagtgttcttcattctactgtaccacctgccatagcctggggtggggtcctgctacaagggttcccactggtagtaagatgtcctg<br>gagtacatcaggactgggtcatttctgcgtactctaaaactgcctttttaggtttccctcatagggccattttccccttaatattaaagtgtgtcagttt<br>agcctctaggaaggcagtggttgaattacaagtacaaggctatccctcctcataagctcggactcatttagcttgtgtttgtgcttcagtggcctttata<br>cactattgaacttcatagcaaattcatggagagtaggggaaaatatttttatcctgtgacaatctgatagaatggaatgtattt<font color="green"><u>AAATAAAATCAGCATC<br></u></font><font color="red">GGCCGGGCGCGGTGGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGCCAGGAGATCGAGACCATCCCGGCTAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAATAAAA<br>ATAAA</font><font color="green"><u>AAATAAAATCAGCATC</u></font>caccttacctttggtaggagtggtaatgccacctggaaggcagggttgatgggaagctctcaggcagcatgctcatact<br>ctctggccttggcatttgctcactgggtttcagggggagctcatctaggttccccaattctaacattgtgtactttcttatttgaaattctgataggttt<br>tcagcattaaaacaattcccagccttttctaatttggaaaattctttcattcatgctacctcaggaatcattattatctttttataggtaactaaattca<br>gaggggtcagatggcttcctcaaggtcatgctgctaagatatgagagctgaagtttttttattttatgttcactgctcttttataacatacatttatgga<br>tttga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	480	159	NA	intergenic
0	chr11	12900319	12900585	1000043	0	-	Ya5ac2013; 812; RIP_Alu_chr11_012_01	TGGCAGATTCTGACTGGCTA	CACGTAAGGTGAAAAGGGGA	SINE	Alu	Ya5	ccacctcccaggttcagtggattctcccgcctcagcctcctgagtagctgagattacaggcatgtgccaccacgcccaactaatttctgtatttctagta<br>gtaacagggttttgccttggtacccaggctggtctcaaactcctggcctcaagttatctgcccacctcagccactctaagtgctgagattacgggtgtga<br>ggcaccgtattgctccagatttggcagattctgactggctaatttttataccttgacaggcactaaccactaagacctgagtcatcatatactttaaaat<br>aagtatctacatttaaatttcctttttgaattggttattaggaaaatgtccaactccttaggcaaaacttcctactttctgtctacaaat<font color="green"><u>AAAGAGAACC<br></u></font><font color="red">GCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAG<br>ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAGAACC</u></font>atgtactccacattccccttttc<br>accttacgtgccaagaaattcaaagctaaattcagagttcaactacaataattaacttgtctcaggtgcttctaatagctactaacagtcagggtacagc<br>tccttttactggtttccaatctgctttaacttgtacttatccggttttatgttacccataaatgtagtgagctttcctcacattctgcattttggatttt<br>atggggtataaatcataaacaaacaaaaatacccaggtgtgcatttttctcacattcaaaggtttaacatttggctccacaaaagagcagctcagcagga<br>aatcatgcatgtctttccctaaatgagatcagcatctgaactcccaaggctgaagaggcccctgggt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	489	212	NA	intron:TEAD1:NM:021961:10/13
0	chr11	16179750	16180054	1000044	0	-	Ya5ac2019; RIP_Alu_chr11_016_01	AATGGGAAAAATCGGAATGA	TGTTCAAATGCTCCTTATTTGC	SINE	Alu	Ya5	ttctactagtcttcctttacaataaaattcattatgtcttcactatgtgtatattaataacatggccttagaatcttcagaagcaaatgaaaatttttca<br>ttggtttatgttttctttgtgtgtattttcatcgtataagagttgaacatgtgcttaatataaaaattaaaattcataatagtgctgtaaaatttagata<br>ttttaatactctcattttttacatgggcatttttctgttatttagttaattagtagtgaaagtataagtttttcacttctaaaatgggaaaaatcggaat<br>gatcttcatatatccttaattgggagtcacttttcatgaaaaataaatttattatttctatgaattttaaattaaaaatctctctt<font color="green"><u>AAAAATACTTTGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGAAA<br>AAAAA</font><font color="green"><u>AAAAATACTTTGCA</u></font>aataaggagcatttgaacaaactttatgaaaccaagattattagaacctatacattgttaggtttactttaatgagttata<br>tctatctatatatagaatatataatatatacatttatatatttgtttattatgagtttctacatattttaaatagtgatgaattgagcctaattattcta<br>aagaatagtgccattcatatttcagcttgccagctacataaatttattccaggaaatttttatgacatttaaaaatcaactatagggttctatttatgta<br>atattaccttgtcagaaactgacattaaatgagaacaagttgtgattgtgtattcatatatcctggcttacctggtattgtcctggtttctatacctgtg<br>ttctt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	456	137	NA	intron:SOX6:NM:033326:4/16
0	chr11	19511832	19512127	1000045	0	-	Ya5ac2035; RIP_Alu_chr11_019_01	ATGGGGTGACAAGTGCAAAT	CAGTCATTGTCCTCCTGGAAA	SINE	Alu	Ya5	tgagtaggtgctcaacatgtgttcaccaaagctgttggacccatgattacaaccatgcactgaagtctgcactgtgggtacagcaggggacaaactggat<br>caggtcccactagatcaggtccgtgccctctgagatcccacagtctaatgggggagacaagcaataaacaaataagcaaataaacacgatgctaccaggg<br>gttggccaacactctgcaggcactaagcagagagatgcagtaaggagtaactggaatgataagcaaggtggcctatgacatggggctgtaaaaatggaga<br>cccaaatgaagaggagccacaagggtggcatggggtgacaagtgcaaatgtcctgagataaaacaattcagtgtgtctgtggat<font color="green"><u>AAGATAGTTCCCAGAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGA<br>TAGTTCCCAGAG</u></font>gggagagagagagagacagacagacagaaacagagggggtgggggtagagaaagtgcacgtctcagagaaggtttcagtatgtgatat<br>ttccaggaggacaatgactgaaaagacagggagaacctggtttcattggggtttcacccagccctgcaggaggatgccagagggaggaaaatgcccagga<br>acacacatgcccaggacatgtgtggacatggtcagctgatggcctttgtaggagggagagagaattgtttacaccaatgtttgtcagccttgaagaaggg<br>ggtggatataattttgaccccaagaacatttcacaatgactgcagatatttttggtcatctcagctggggatggggagttgtcgctaatggcatct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	491	179	NA	intron:NAV2:NM:001111018:1/38
0	chr11	39761704	39762026	1000046	0	-	Ya5ac2045; pAlu11-39844195; 5052; RIP_Alu_chr11_039_01	GCCACTTATCCGTTTCAGAAGAT	CTATGGCTTTTCCTGAACTTTCC	SINE	Alu	Ya5	tgtgccattgtactccagcctgggcgacagagcgagactccatctcaaaaaaaaaaaataaataaatagaaagtttgaattacttccttaattccccaat<br>gactcaaccccaacactttgcaggctacttacatatacagttgtaagaaggagattgctcttttcacatatgtatacatgtatatgtatgcatataagta<br>tgccttcatttgtaactcaatatcctaaaggatgaggattgctagaaattatatgacactaaattattcaaagccacttatccgtttcagaagatatata<br>atggaagtctgtattcaagatgtgtaaaaatatttcactgaaatttttctttatggacaaattggtagataccagaactctgttaaaa<font color="green"><u>ATATTACAAATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAACAAACAAAAAAAAAAAAT</font><font color="green"><u>ATATTACAAATT</u></font>gtacaaatcgtactttaaaatctttcctgtaatttttttcagccatgttatatgttcaagcaatt<br>taattgctcctttttataaagatttatgctttttgtgttttcaaaaagggaaagttcaggaaaagccatagttgaatgtagcatccaataaacatgttcc<br>ttataaatgagataatgaatctttgagaactgagggaactactctcacttatttataactctacttaaattccaagattcctaaagagaaaaatcaaaga<br>ttgatcagactagccttagaaaacattaccacgtattctgtagaagaaatagtgttgtgattttaatgagtaccacacaggctaagggtagatttgcctt<br>attcttcttcctaaaatcttaag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	599	264	NA	intergenic
0	chr11	25521063	25521389	1000047	0	+	Ya5ac2050; RIP_Alu_chr11_025_01	GTGCCAATGTATGCAACAGG	GGGCGTCCTCTCTTATTTCC	SINE	Alu	Ya5	ttacttctgaagctatatcatccaccttacttcctaggaatacttcctgccagtgtttttcacaaatgttattattgtgttttgttgaaaacaataacaa<br>acatgagtttacctggattgtgcaacaaaatgtgaaaaataatttattttctgatcatgctaaatccacgatttggcattttatatcataaacatagaac<br>aaaacaacatccaattatgtttccttttgaaaccttcagaactactacattttcagaatgccatctttattcagtattaattacacccctaaaatcaacg<br>ggatagaaaagtgagtgccaatgtatgcaacaggaacaaaagtctcatttgcacaggaaatgtccatctcttccctagcatggctt<font color="green"><u>AAAACCATGGATGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAACAAAAACAAAAAAACAAAAAAA</font><font color="green"><u>AAAACCATGGATGT</u></font>taccaaatcagttggaaataagagaggacgcccataagaagggactgttaatgttgcag<br>gaatatgaccttgaaagccctgaaaggaaagagatgtgccactcctagagtattgcttgctacctggcatgggacctgaaaaaggggtgagatgactgct<br>ctgagacccagtatgaatgattgcatgtgcacagcgcagaaaacggtcactgggattcctaccacccttgggtactgtagatcagaggcagcactctgtt<br>cagaactcagataagcaagaaccaacacataggccctcataatgtagctcaagcccatgggtcagaagtggactatttatgtcccagaaactttatggaa<br>tactgtggctgatactatgagggaaca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	460	341	NA	intergenic
0	chr11	89572170	89572500	1000048	0	+	Ya5ac2095; B65; RIP_Alu_chr11_089_01	CTAAAAGGGACACCAGCCCT	TGAGTTATTTCCCCTCTCCG	SINE	Alu	Ya5	ggcaagccatccaacaccaccagattaagttgttaagatacctgggcagtagggaagcagtcagggataattaacaacaacaacaaaaaacctatcaaac<br>aatcaaaacaaatgaaacagaaaaccctattaacaaaacctaaaaacaagctgggcttaatagcttgcatttcaaaactgaggccatggaattatactgg<br>tgaaaacaaagtaaataacaaatatgaatgccaagtcaaaataatttgccataaaagatgaacaacaaaaaaaaaccctgttaatgttcaaatagataat<br>ttaaaagtacctgactgctaaaaacaaaatttacagagtacatacccatatatcctaaaagggacaccagccctcataaatgagcttttaag<font color="green"><u>AGTTTACT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAAGCTGAGGCAGGAG<br>AATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AATAAATAAATAAAAAAAATAAAAAAAAAAA</font><font color="green"><u>AGTTTACT</u></font>tactgtgagtatacgcatgacataaattttcaggctgaggaataactgattaaaaaaaaaa<br>aaaaaattgggagttcggagaggggaaataactcaaagtccctttaaaatatttgcaagaactctttaagtttctctacactttgatggttgaataattt<br>tctgaagaaaattcttaattaaatccttgcataaaatataaattagaataaagtaaaatcattacagtcctttgccagtatagttacaccaagaagttac<br>atcttcaacctataaacatttgttgattcctaatcatatcttaattgtttataaattactggcttaaattattaccaaaaaagtaggacaagtcttaaga<br>ccttgaagaattccactaaaaacagatggta	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	60	481	142	NA	intergenic
0	chr11	92616000	92616332	1000049	0	+	Ya5ac2102; RIP_Alu_chr11_092_01	CCTGCTATTCCTTTCCTTTAGTG	GTGACTTCTAGCCACAAAAATGG	SINE	Alu	Ya5	tttgtctttttttggattattttttatcattctatttttccttctactagtttagaatatatacctgctattcctttcctttagtggttccttaaattat<br>aacattatgcttaagttatcaaatccccaaattaatcaatactttgctgcaccatggacaatgttagaaccttagaacatttaactcaattttctcaccc<br>aatcaatttacatgttattattgtcatgtattttaatgtatgagtactatttgaatatactcgtttatcactttatttgttcttaatttcttcttgcttc<br>tcagaccttccatttgatattgcttctcttctgcctgaagtatattgtttagaatttcctttcatgagagtctggttgtgtt<font color="green"><u>AAACACTAACAGATTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACACTAACAGATTTTC</u></font>ttagttaaaaatatctgttttctcttcattttaaaaaccaaatattaac<br>tgggtataatatctagattggaagttattttcaacacattgaagaaattctgtctcccatttttgtggctagaagtcaccttttggtccaattgtttctc<br>ttttaaaggtaatactttatctctgtctgcttttaagattttttttcctatctctggtactccattgtttcagtgtgatttgtctatgatgaaatttttt<br>ttatctttctcgagattgtttatgcttcttgcaagtgtgtattattttctttagttttaaaaaataactctagctattaactctttaaatattgctcatg<br>gccccgctttctggctcctttttctaggacttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	NA	NA	NA	intergenic
0	chr11	96607006	96607321	1000050	0	+	Ya5ac2105; RIP_Alu_chr11_096_01	TGTGATTTACTTCTTGAGTTTTCCT	AACAGAAATTGAATGGACACCC	SINE	Alu	Ya5	gaaactgtcacatttataaggtattattaagaattcttgtttcttagagactttagttcaaatcaatccattaaaaggattggccagttgcttggtggct<br>gatgtaaattaaatgctatttcaatgtaaaatggcagctcttaaacagatcttattaagtgtatctatgataatgaatttcttctgaccaaatttagcag<br>ccttttctctcttaaacttttaaaacctcagagtagtctcgacaaatatggtttttttttttttttactgtgatttacttcttgagttttcctaagagtt<br>ctctgaaactttattttttctagtgtaagtttctgaaacaaaatcactgagatctctatttttgtttttctatctactttcatttt<font color="green"><u>AAGAGTTTATTATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGAGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAGTTTATTATT</u></font>ttacttaatttctaacttagggtgtccattcaatttctgttgtacaatcaataaagcatcaattcaaataatct<br>tttcattagatttgaagttaaattaataataattaaaataccctgttattttacagttaacaaagcactttcttgtatgttacataatactataaatctg<br>tatactagatgtgattctcacagatttggactgggtatgtgacttgtttgtcttaagattacttgtggagcttaggcttttgcattttgactgtcagttc<br>catattttttccaaattcaacatattaaagtacttaagctcatattccatgccagaaactatgctagcagctgaactatgaaatattttggtcccaaact<br>catttgagtttg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	499	174	NA	intergenic
0	chr11	119224732	119225011	1000051	0	+	Ya5ac2122; RIP_Alu_chr11_119_01	GATTATTGGGCCAGCTTGAA	GAACAAATTCAGCACGAGCA	SINE	Alu	Ya5	ggaatattgccacgaagtgtgttatgaggttgattagaatggactgacttgatgatcctaagagaaaggctgggtgtggtggctcatgcctgtaatccca<br>gcactttgggagacccaggcgggtggatcacgaggtcaggagttcaagaccagcctggccaagatggtgaagccctgtctctactaaaaatacaaaaaaa<br>attagccaggtgtgtggcgggcgcctgtaatctcagctactcaggaggctgaggcaggagaattgcttgaacctgggaggcggaggttgcagtgagccaa<br>gatcgtgccatggcactccagcctgggcgacagagcgaggctccatctcaaaaaaaaaaaaaaaagaaaaagaaaaagaaaaaaaagaaaag<font color="green"><u>AGAAAGGA<br></u></font><font color="red">TCTCAGCTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA<br>ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCG<br>AGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGGA</u></font>tctcagcatacc<br>tgtgtttgtcaaggaggctgacttcccacctttgccccatctttgcatttctgaaaagtttctttagagagtaaacacagttcagtcaagagccatgtcc<br>tctccccacacatgtggctcacagccctaagaggtggaagggccttgctttagggcgcagtgaggaatggctgcaggtgcttggtgctgggcatgtgtgt<br>tttgagtgcccgggtgtgtttctgtctgtgtatgtaacacacgtgtcaactgggacctatgatgctggctggaactcccttttcatatcctagggaagtt<br>caatgttttatcctgagatttctaagaatttccagagaggggagtgagcttgagttctcatgagggtcttggctccaagc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1123	835	NA	intergenic
0	chr12	128406651	128406954	1000052	0	-	pAlu12-129579553; Ya5ac2130; RIP_Alu_chr12_128_01	ATTGCCAGAAGCTTTCGTGT	TTCCCTGAGCATTTACTGGG	SINE	Alu	Ya5	gtctcactctttcacccaggctggagtgcagtggcacaatctcagctcactgctgccttgacctcccaggctcaagcgatcctcccacctcagcttcatg<br>agtagctaggactacaggcacacaccaccatgcctggctaatttttgtatttttattttatttatttatttatttatttatttatttatttatttattta<br>ttgtagagacagggtttcaccatgttgtccggaatagtctccaactcctggggtcaagcagccctcccgcctaggcctcccaaagtgttaggattacagg<br>catgagtcaccgagcccggcctcgtttcttatttattgccagaagctttcgtgtagcatttgttaattgacttcggcatccgccttacttt<font color="green"><u>AAAAATCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAATCCC</u></font>ttcagtttctctagaagcagactgtgagattgggatttgtgtgcaactgatttatgaaggaagcgcttccaggagaacccagtaaat<br>gctcagggaaagtacgacgggaatgggtggagaacccaaatgaagtttcagatgaaatcgcgtgcagggtagcttcaccctgatcccgtcgggggtggct<br>ctggagggcaagcgatcctgctgcctttgataccccagctagaggcacaggagcagggctgtcacctccagcatcggactctgcgtgagggcccctccaa<br>gggccaggaactctcaggcactttaggctctttgcgcttgtgggcaaggagacttcagaaactaaaaagagtcatcaaggaaagttgcaggtacagattg<br>ttaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	476	163	NA	intron:TMEM132D:NM:133448:3/9
0	chr12	23687007	23687305	1000053	0	+	Ya5ac2140; RIP_Alu_chr12_023_01	GAACGTGGAAAACAGATGGG	ATCCCCATGTCACCATCCTA	SINE	Alu	Ya5	tctaatatgttaaagacagcctccaggaaaaggtgatgtttaagctgaaacttgaattaaattatagttagctagacaaagaagggaagaaagattgttc<br>caggcagggaaacaattttcatgaagaatcaaatggaagtgttagttatagcccagtccctgtattgctgaagtacagagagcatgtagggaagtgagat<br>caatgggattggggagggagtaagatgccagattatgtgtgatttctgtaaacattaaatgatctaaactttatcctatacggtaaaggaaatcatgaac<br>gtggaaaacagatgggttgagtaaaatcacttgggtgggaggttgagagctgtaatcaactagtgagcagatgcagaaatctgtat<font color="green"><u>AAAAGGTAATTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAGGTAATTATG</u></font>gtcagactaggatggtgacatggggatggagagtgaggcagggactccagagatatttaaatggtataactggtaaaacctaatgac<br>tgttacgtatgagagtaacagaagactcaaggatgacttccaggtttttcactaaaacaactgattgacatgtggtagtatgtactgggtttgtaaacac<br>agattagaagcaagactgccaggtggggcctaaagggtgttgttgcggggaaggaacaaagagttctgttttagatattttaagtttgaaattatgatta<br>gatatccaggttgaggtatttattagacacttgataaacatgttaaaattttaggggaaaagccctcataggagacatatacttgagagtggttagcat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	444	131	NA	intron:SOX5:NM:006940:7/15
0	chr12	53139776	53140076	1000054	0	-	Ya5ac2169; RIP_Alu_chr12_053_01	GGGCTAGGAGGAAGTGATCC	GTCTGGGGAGGACATCTGAA	SINE	Alu	Ya5	ggcatgcgagttcccaaatctctgccgtatgttctgccatggaaaaacagtaagtgaaatagagacaaaatagttttactcttttcattgtgctaaatac<br>agttgatcttgattattcagatgtgttcagtctgaacaccttgcatttccatgacccttaaagtgagtgcctccttaaatgttatgccctaagcacctta<br>ctcagttcaccctactgaccgtggttaggagcaagaaattatgaacaggaaagtataagatcacagaagccaaaagaatattttcaaaatggggtgacca<br>ctgacgtcaaataccatgagaaaatttgggagccaataaaaaggttaatgatttgggctaggaggaagtgatccctgatttctttc<font color="green"><u>AAGGCATAATATCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGGCATAATATCA</u></font>gtagggaattgggatcagaaattggattgtgagggcctaaaaggaaatgagtagagagaaaatgaaagtcataagtcataagaac<br>cagcataaagaatggtattcagatgtcctccccagactttagaggtcatgctgggtaaacaagtactaaatttgtatcatattaccgtcataatgaaatt<br>tccacatagagaacacccaagatactgtcatttttacttaatacaaactttcttttccaatgttgcccctagattcagattctcttgatttcagtctgtg<br>ctactgtttgagctaatttttaggtggctagaggattcactttaaaacgtttctccctggatacttgcatttcccaaaaaatgaagtcaccaaattatat<br>g	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	483	168	NA	intron:GTSF1:NM:144594:7/9
0	chr12	10829042	10829353	1000055	0	-	Ya5ac2181; RIP_Alu_chr12_010_01	TTAATTTCCTGGCTTTCATGG	TGAAATCATCAAACATGGCG	SINE	Alu	Ya5	gggaaaatatgctgaaaaattgaaaagtaggtatattgaaacttacaaaattatttttaagtttaaattttttttaacatcacaaaaacataatttgtta<br>taattttaatttcctggctttcatggaagcaaatacatcataatatttttaagatgtctttctctgattgtcttgttttcagttaagagaattgccatgt<br>ttggattcctcaaggatccagaactagaaataccatttgacccagtgatcccattactgggtatatacccaaaggattataaatcatgctactataaaga<br>cacacgtatgtttattgcagcactattcacaatagcaaagacttggaaccaacccaaatgtccatcaatgattgactggattaagaaaatgt<font color="green"><u>GGCACATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAGTGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACGCCTGCCTGGGCGACAGAGGGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAA<br>AAAGAAAATGTG</font><font color="green"><u>GGCACATA</u></font>tacaccatggaatacgatgcacgcataaaaaaggatgagttcgtgtcctttgtagcaacatggatgaagctggaaaccat<br>tattctgagcaaactatcgcaaggacagaaaaccgaacactgcatgttctcattcataggtgggaattgaacaatgagaagacttggacacagagtgagg<br>aacatcacacactagggcctgttgtagggtggggggagtggggagggatagcattaggagaaatacctaacgtaaatgttgagttaatgagtgcagcaaa<br>ccaacacggcacatgtatacatatgtaacaaacctgcatgttgtgcacatgtaccctagaacttaaatttaaaagaaaatgatcacagaatgctattcta<br>aaatatgtacat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1173	853	NA	intergenic
0	chr12	22988831	22989146	1000056	0	+	Ya5ac2182; RIP_Alu_chr12_022_01	GCTTCCCCAGTGAAATGAAA	TCCCTGAGGTCATTATTTCCA	SINE	Alu	Ya5	caaagtgctgggattacaggtatgagccatcgcacccatcctgcagttattttttatattgagcactgagcctgcctcatgaaattgattttagaaataa<br>gtgggatacattgtatagagagcaataactatacaatctgctaaaaactgttaaaaacttctctgtgtgtttgatagatgtaatgtgcactatgattagc<br>ctgctattctaatgtgtaaaccatagtttttaaatttgtttgtttgcttgtttgtttaaacattgcttccccagtgaaatgaaagttacttttactttga<br>gtcagtgtttagaaactgggtgtggataaatgaccttcaaaagtaaaacactggaaaaatgtataatgtttttacaatgctttt<font color="green"><u>AATATTGTATATGCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AATATTGTATATGCAC</u></font>tgtcaactaatggaaataatgacctcagggatgtgtttatcttggttttagcccacttaaaatacatt<br>tagcctttagcttttccttaggcccaaaccacatcaaatgggccacacacagactcctgaggtcactaccactttatggtcattttaggaagaaaaggaa<br>agcaaactctctcttcatattacgttttaggcaaggaattctcacaggaagagtgaatatatattttttcctttctttctttttctacactaggtgacct<br>gctagtcccacttttcctaaaggtagatttttaagcctacaaaatgaatctttaaagccagtttcaagtgtacttcattgtgagtaagagaagcttcaga<br>atccaatattatctca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	498	167	NA	intergenic
0	chr12	76432803	76433110	1000057	0	-	pAlu12-77841515; Ya5ac2205; RIP_Alu_chr12_076_01	CATTTGCACTCAAGTCCTTCAT	TATTTTCCCAAGCGCAGTTC	SINE	Alu	Ya5	ccccagaacctcccacagtgcctccgacttagtagataaattcagaaatgattgctcaatgactcaatctatcaatgtttatatctgaagtagagaacag<br>aagcaggtcccagagagttttcaaatggttacctagcccatgaaatcttcactaccaaaaagttgacagtcgttttttcagttttgttgtgaagtatctc<br>cagggatagggatccaccatgacctgctttatatcctgttcctatgaaaatcattgttatatttaagatgcctaatttataaattcagaattctattcct<br>cctttttaaggatttagcagatctacccagtaatatctgtgtaatgtttacatttgcactcaagtccttcatttaggcatacatt<font color="green"><u>AAAAATATTAAATAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAATATTAAATAT</u></font>ataagtcctttgactgtatattagaatagtgtaccaaaagtcaaaaatagttcctacagccagtagcctaactatat<br>acaataacacctccctcatctcatgaactgcgcttgggaaaatatcaagtcctcactcaagcactatcctggtgttatttagacacaattctggcatgca<br>tggcttaccgtcagaatcagcaaataaagattagctttctagaagtaggcacattgccagcagtaaggaataagagtagaaatgagaattcaaaaaaaga<br>cagctgtctggatccatttagtacatagtagagtggggctacatattctaatataccttgaggacagtgttgtgtcactcacggggcagtaaattaatac<br>atatctct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	494	171	NA	intergenic
0	chr12	93193479	93193786	1000058	0	+	Ya5ac2222; RIP_Alu_chr12_093_01	GTGTTAAGAGGCTGACCCCA	GGATGGGTGGAAAAGAGGTA	SINE	Alu	Ya5	tgctgagggtgatagtcactgatgggtgactgttgtcccacagatgatgcttttgtctctgaaatttatcatgaattatctgagaacaaggactatgtca<br>taacatctctctgacatcccagccctaatactaaatagggcaggagaacatgctggttaaatgggctttggtgggagtgtgggagccggagagatggcgc<br>ttccatcgaggtgtctcccccgatggggtacagtggctgagggcagacgctgtgatgtcacgctgtctgacatggcacaggcatctgctccccatcacag<br>agcagaggcccgcgtgcactttcccagcctgggggtggaggtgttaagaggctgaccccaagggccttgactgtacttacgcctt<font color="green"><u>AAGAAACTGCTGTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGAAACTGCTGTTT</u></font>gagcactaagtgttagcagcatgaaaaatgaacacatatcaatttatgtctgaatttactctcagaattccctgtgg<br>actctgtaaaatgccattttacctcttttccacccatccagctgtggaggcagtggcagatttacattattttacatccagttaagggtgttttttcttt<br>tggttatgtttttaaaaagaacatttattgcccataaaaaagtgtttttgttaaagacaatagtgcctttaggtagtaatagaatgctgtttcacaaata<br>tttataaaactattaaacaagctgagattgctgaagctccgattaaaaggtgcctcccattcatctttccctttagaaactgaagtagcttaactgcaat<br>tacccgcc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	499	176	NA	intron:PLXNC1:NM:005761:21/31
0	chr12	93868200	93868497	1000059	0	-	Ya5ac2227; RIP_Alu_chr12_093_02	AATTTCCCCAGACATAGCCC	TGAGAAGCAAACTGTAAGCCAA	SINE	Alu	Ya5	atttgtggggaggtgagctccttccctaggaaaaagaatgcaaagttataaatataaaattaagtatgaaattgaatattttacttaaaatgggaaaaga<br>aattatagcatgttacaaagttttaaaagctgacaaatagtacaaaaatccagaaaaataatatctttattattggactactcaacactctctttacact<br>tttctgtttttgtaattgcatacctccatgtgcttcttcacatgcaatgatttcgtaatatcattttctagagatagagaattcagtcttccctatagca<br>tggttgaatactcttcctttaaaatatttatatattagaaaagattttcagcctcagaactggctattggtaagtcatgtaaattttt<font color="green"><u>AAAATTGTTGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AATTGTTGCC</u></font>aaatttgggaaactccacagaaaatttctttcatatatgaactgtaagacttcatgtacatttcaagttttctcacagagggactgatct<br>taagtattctgaattgatgaccttcattagccagtttgtcattggtaaccccattgaactggtggattatggtatcagtatttcatgttagataaaaaat<br>aaatagataatcaaacaatataaaagcctattctttgtttgaaagtcctttcttcctctaaatgagttagttactatactttgggtataatttgaaaaaa<br>aatatattttggcttacagtttgcttctcattgtcagaataatttccttccatccttccttccttccttcctttctctctctctgtctccctctctct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1150	840	NA	intergenic
0	chr13	100704958	100705265	1000060	0	+	Ya5_545; pAlu13-100743498; RIP_Alu_chr13_100_01	AACTGATTTGCCGCTTTGTT	CAGGGGTACACTTATTCCCAAG	SINE	Alu	Ya5	aaccccatctctactagaaatacaaaaattagctgggtgtgcctgttatcccagcttcttgggatgctaaggcaagagaaccactggaacttgggaggca<br>gaggttgcagggagccgagatggtgccactgcactctagcctgagcaacagagtgggactgtctcaaaaaaaaaaaaaaaaaaaaaaggagacaaaaaca<br>acaacaaaaaaaccccaaaacctagagtggaacaaattcagaatgcttaagtagttcaagagtacactgatggggtctatctggttgtttaagtcaacaa<br>aatcaccactacctagtttatttatttatttatttttccaggatttcaagttagtttttagctggttaactgatttgccgctttgttaa<font color="green"><u>GAATGAATGAC<br></u></font><font color="red">ATGTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>GAATGAATGAC</u></font>atgttaaaagctgcattcatgtaatgtaccaatgtgatgaacttgggaataagtgtacccctgtgaaaccattaccatcaa<br>tgccattgacatatccaccacctctcaaagtttcctcccacaccctttcttattattattgtcaggggacaacaattattggacacataatatatactga<br>attccaccatccaatcctgtctgtctgttgttgaggttgtttttatttttaatattatataaaaaagaaaaaagacaaggatttaccaactacccctgga<br>ctctacaatacacttaaatagtaaccagtcaactctacaacattcaattatttgacattttgttggaatttcttaaggtatgaggataaatcatctacca<br>tacataaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	415	110	NA	intron:NALCN:NM:052867:11/44
0	chr13	35336421	35336722	1000061	0	+	Ya5ac2247; RIP_Alu_chr13_035_01	TAAGCTTCTGAAGGGCAGGA	GTTTTTATTTCCATTTAGATAGCCA	SINE	Alu	Ya5	aaaagtaaaatttaaatagcatgaataaaaagacttcaggatttctggagtaacatagaagtaagttttaaggctgggtgttcagaatggtgcttcgtca<br>tggtagatgctcattaactgagccatttgggttttccttctttcaaatgtttgcccttgcatctccagcacccaacgttgccggtccactatagattctc<br>aatgcatactgaatgaatgaatggttgttgccatgaatgtttctactctataagcttctgaagggcaggaaagtacattatctcatattggaattgaaag<br>gtgtgaggcactcattgggcctcagttatgtctgctaagggttccacagacagagattctaaatacagggtatcattctatgat<font color="green"><u>AAAAAGTTGGCTATCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAAGTTGGCTATCT</u></font>aaatggaaataaaaactgtaaaacaaacaaaaaaactccatttttcttctctcttttttttttttttttggaatggggtctc<br>actctggcatccaagctggagtgcagtggtgtgatcatggctgactttagcctcaaactcctaggctcaagacttcatgtcacctcagcctcccaagtag<br>ctgggaccacaggtgtgcaccattacacccagctagtttttaaatttcttgtagacacaggtcttggtatgttgcctaggttggtctcaaactcctgagc<br>tcaaccagtcctcctgcctaggcctcccaaagtgttgggattaaaggtataagccaccatgcctggccccagagctttcccaaatccaagaaaagatcaa<br>aa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	484	166	NA	intron:DCLK1:NM:004734:5/18
0	chr13	21953219	21953513	1000062	0	-	Ya5ac2259; pAlu13-21985103; RIP_Alu_chr13_021_01	CCCGAAGTGCTCCATTAGAA	CCATGCATAATGTTCAGGGC	SINE	Alu	Ya5	atcacctcccatggggccccacctccaatactgggtattacaattcaacatgagatttggaggggacatccaaacctgatcaggtgccctgcctcctcac<br>taactcaaccccccttttccttttactgtcactagttggtttctttgggccattctctttagtaaaagggaattgaagatcacaccaggaagagactgta<br>gtaactggaactaagtgaacacataatatgtaaagtaaagcaaaggagatatttcagacagaatttgttaggacctaatgtggaaaagctgaagtaggac<br>aagagcctctctaagatggcatatatatggcttacttactaaactctatctttaattcccgaagtgctccattagaagtcctggatt<font color="green"><u>AAAAAAAAAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAA<br>AAAAAAGA</u></font>aatagctcactagccctgaacattatgcatggtattgtattaggtaattcctcaaaattaaagattaaattccaacttacttttcaaagaat<br>aattatacctctgtcatattgattggtttacatgattgtcaagtgtaatatgtcatttaagttaattaaatatccatttctacttcatcatgcattttta<br>tcaattaaaggcattgtactttaatctccacaaatacacaactgttggattccataacaaggttcagttatgattttcatgtatgacttgcatttcagtc<br>ttccttactaaattgagagtactccaaaagaaaaaaaaaatttgtatttccaaaatccaagatgttagctaaaataatgtaatacttaatgaata	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	383	75	NA	intergenic
0	chr13	102807865	102808174	1000063	0	-	pAlu13-102846400; 79718; Ya5ac2265; RIP_Alu_chr13_102_01	GGTGCCGAGCCTTATCATTA	TGTTTTCTGTTCCCCCAGAC	SINE	Alu	Ya5	tgcccaagatgcctggtcttaaaaatggccataagattttatctaaatctactgggttgtattaagatagtcagctctccccagaatgaagtttgcagta<br>ggtatgaacaaatcagttgccagtctattagagcacaggttgtctgatattctacccattctccagattcaggaccaatttgggagcaacctgagtccaa<br>ggtgcttagtttccagtaccagctcagtcctaagccacatctggttctagattagctaaagaaggtaaagtccatacccagttgttgaggggaacaaact<br>aaataagaagagtgaatgcacatttatgaaagtgtaaatgaacgattctgttatgaacacaaacatgaccagggtgccgagccttatcatt<font color="green"><u>AAGAAACTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAATAAAT<br>AAATAAATAA</font><font color="green"><u>AAGAAACTG</u></font>aattcatgactcccagtctgggggaacagaaaacattactgagctggagcacattggcccattcagttctgaaatgcatgt<br>ccaacaggtaggtggagccctgagcaagaattgctactgtgttgaagtcacagagccagagtgcttccatgtagccagagaaaatcttccagagtaagtc<br>attgctgtggtgagccattgttgggagaggttgtgggtacgtgagacatacaaacatttgtgaatccaccaaaaagaggttaatttttattcctaaaatg<br>gatagacaggttatgttagaattccttctttaccactgaaggggacaccagatactaagcttgcaacatagtaaaaccctgtctctaaaaaattatttaa<br>aaattggttg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	382	63	NA	intergenic
0	chr13	102942392	102942662	1000064	0	-	Ya5ac2300; pAlu13-102980933; RIP_Alu_chr13_102_02	AAGCTCCAAAGCAAGCACTA	TGTTTCTTAAGGGGGAAGCC	SINE	Alu	Ya5	ggatctatgaaagaaaaacataagcccaggaatgtaattacattggcaaataagagggtttttttcttatttaaatatcttcaacaggtttaatgggtag<br>gtaataggttgataggtgcagcaaactaccatggcacacatttacctatgtagcaaacctacacatcctgcacatgtactccagaacttaaaataaaata<br>caattaaattaaattaaaaaataaatatctttaaaagacatataataacaaagtactatggggtttatagtatacctaaaagtaaaatgtgtaacaaaaa<br>catcacaaagttatgtgaagtggcataatatcctttgaagctagactgtgtactataagctccaaagcaagcactataattacaaaac<font color="green"><u>AAAAAAGGAATG<br></u></font><font color="red">GCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTA<br>GTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTG<br>CACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGGAATG</u></font>gaagtggaaatttaaaa<br>atattttgaaccaaagatgaaatgacaacatattaaaatgtgagcagtacagcttaagcagttattacagaaaaatttatagcactaaacaacaatatta<br>ggaagaagaaacattgaataatctcggcttcccccttaagaaacaaaaaagaaaggtaaactaaatccaaggtaagcaaaaaactaaaataagtcatagt<br>aattaataaaatgaaaatacacaaatatatactctgtatattgtacatattatatatacataatatatatttactaggtattttaataaaaaaacacagc<br>tctattttcaaaatttaagaaatacattttaaaaaatctccagcctaataaatttaaaacaaagattactt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	489	206	NA	intergenic
0	chr13	30073598	30073920	1000065	0	+	Ya5ac2268; Ya5-MLS12; pAlu13-30105500; RIP_Alu_chr13_030_01	GGGCCTGTGGTCAAACTACT	CAGTTCTGCTGCATTCTACCA	SINE	Alu	Ya5	cactgatcaatgtactttgtaatctccgccacccttaagaaggttctttataatttcccccacccttaagaaggttctttgtaattctccccacccttga<br>gaatgtaatttgtgagatccaccgctgcccgcaaaacattgctcttaacttcaccacctatcccaaaacctataagaagtaatgataatccaccaccctt<br>tgctgactctcttttctgactcagcccgcctgcacccaggtgaaataaatagccatgttgctcacacaaagcctgtttggtgtctcttcacatggacacg<br>catgaaagaaaccctacctggttctgtgtcttacctgttgggggcctgtggtcaaactactagtacggagttttagtgtcctcacttt<font color="green"><u>AAAAATGAGGGT<br></u></font><font color="red">TGTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGAGGGT</u></font>tgtaaggtaactacctactttttatagcattgtagtgaagttgaaatgaattaatccacatatat<br>tatagtgtggtagaatgcagcagaactgatgatgtatgacttctaagactagtccttaagagacctgcagtttttgcttttgccctcttggaacactcct<br>gttgccatgttaagaaaaactctggggagactatgaaggaagagagcatactcggggcaggggggtgaacaggacgtgcacatgtacgagcgtacaagcc<br>aggtgacaccagtaccacagcctcagacatgtcaccggggataccagcaccacagcctcagacatgtcaccggggacaccagcaccacagcctcagacat<br>gtcaccggggacaccagcaccac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	487	152	NA	intergenic
0	chr13	23608968	23609268	1000066	0	-	Ya5ac2272; RIP_Alu_chr13_023_01	GCCCAAAGGGGTGAAATAAT	TTTGGATGCAACAAGTCTGAA	SINE	Alu	Ya5	cctcagcctcccaaagtgctggatcacatgggtgtgagccactgcccatggacttagttacttcttgatattatgtaagcagaatgtaaagaaggttgta<br>agtatttttagttttctgtatattatggtgttttgacatcttaaaaatcctttctggctgaagagagactgcccctttctggactagtaaattcttagag<br>acagcaaaggcccagccaggagcaggcccctggcaaacccagggctggagcccatgtcttcttctttcagttcagtggcctttcaccccaactgaagccc<br>aaaggggtgaaataattttgccaagttcacacagtgactaccagatgtcaacacctgtctctaatgcatgtgaccttatctctcata<font color="green"><u>AAAATAAAGAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAATAAATAAA<br>T</font><font color="green"><u>AAAATAAAGAACA</u></font>tatttaatcaaatttgcatccacaattcagacttgttgcatccaaatccatttatccattcacactccttaaatatttcctgtggg<br>cctactatgtgccagtcttgtgctggggcctatctctcagagcccaataggcccagagaatccacaacgttggtgaacatcgtggccccaaagctgagcc<br>catcaaattagctttggaaagtctatatacagaattcatctgacagttttttctgagcatttcctagttctctttctttcctttctttccctccctccct<br>ctctttttctctctccctctctctcactttctttctttcttctctttctttttttgactaagtttcactcttgttacccaggctggagtgcaatggcacg<br>a	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	464	150	NA	intergenic
0	chr13	43278323	43278652	1000067	0	-	Ya5ac2278; RIP_Alu_chr13_043_01	CCACCTGTGGGCATCTAAGT	GGGCACCTCCTCTCTCTTTC	SINE	Alu	Ya5	tggggaaatcccatctctactaaaaatacaaaaaaaaaaaaaaaaaagctgggcatggtggtgcatgctggtagtcccaactacttgggaggctgaggta<br>ggagaattgcttgaacctggggagcggaggttgcagtgagctgagattgcaccactgcactccagcctggatgacagagtgagactccgtctcaaaaaaa<br>aataaataaataaataaataaagaagaagcactaagtctgaagacatagttggtttggatgctacattacaatatatgacaaacaacatttcatatttcc<br>agattttatagaccacctgtgggcatctaagttcattaaaagctaatgttttgggagaggttagctgccatcaaccacccttatc<font color="green"><u>AAAAATGGGATAAAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGGGATAAAT</u></font>gaaaggaatcagagaattggtagtgaaagagagaggaggtgcccacagcaggagg<br>tggagtatcaagaggaaggggagggtatatgcagaagacagtaggagacagcaaacatgttctgcctgcttcacagtcttctggggactgtctttgcagg<br>ggtaatcctggagtttccctagagctgcggcttaccaagcctggctgtacattggtgcagcctgaggaggtactcagtgaatcgcaatcactgagatggg<br>acccaggaagcagaacttttcaaagtgccacaactggcgctgatgtgcagggctacatggctctagaactagtccttgctggaaaggcctgggataaagc<br>atcgtaagtcttcccactggcagtttgatc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	477	132	NA	intergenic
0	chr13	48271233	48271550	1000068	0	-	Ya5ac2282; RIP_Alu_chr13_048_01	GCTGTTATATGAAGTGTTCACCTTG	TGGAAAGCAGAGAAATGCTG	SINE	Alu	Ya5	tgtggctcacgcctgtaatcccaacactttgggaggctgagacaggtggatctcttgaggccaagagttcgaggccagcctagccaacatggcgaaaccc<br>catctctactaaaaatacaaaaattagccaggcttcgtggcacgtgcctgtaatcccagctactcaggaggttgaggcaggaggattgcttgaacctggg<br>aggcagatattgcagtgagccgagatcacgccactgaactccagcttgggtgacagagtgagaccccatctcaaaaaaaaaaaagttttatttcatgatt<br>tgggtgctgttatatgaagtgttcaccttgtacttatgatttgtacacttctgtctatttacataatacatcaatcaaaagtttact<font color="green"><u>TAAAAATAAAAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATAGC<br>GTGAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAATAAATA<br>AATAAAAAAAAATAAAAA</font><font color="green"><u>TAAAAATAAAAAA</u></font>atcagtatttgcagatgttttaaagagtcaaatagttctacaaggtttaaaacagcatttctctgcttt<br>ccattccttcaccctcaccccataatatctatctctccagagataatctctttcaacttctaaaaagtcagttcttttgcttttgacccttatatctctg<br>aataacatgcttattttcatgtcttaatttttcagttttaagaattctttattgacttccaatatggaagctggaaacgtagctctttctcctttgccca<br>ctcactgtgcacagaaatgtcttccctacctccatatcctccctatgtaaattattcctgattttggttttatttgtgttcaatgtgtataagatatttt<br>ctatatcagagctattta	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	498	167	NA	intergenic
0	chr13	103959221	103959524	1000069	0	+	Ya5-MLS22; 239088; Ya5ac2294; RIP_Alu_chr13_103_01	CGACTCTGGTGGAGAAAAGC	TGTTGCCAGACCTTGTATGC	SINE	Alu	Ya5	ttgcctagcccaatgttcaaaagggtttttttctaggtttccttctaggatttttagtttcaggtcttacatttaagtctctaatccacctttggttaat<br>tttcatatgtggtgagtaatagaggtttagttatgtacctaagccctggagattatgaacctcacataaatatgagactcaaatgcctaataaaaatagt<br>aaacacattgactcaggagaaactagaggaaaagaaaatgatttatactcaaaaaccagatttagccatgtaccaagaatatattgtaaaaaacttttca<br>tttaattaaaattaaaaaataaaattatctagaggaataatttttactgaatttttacccgactctggtggagaaaagcctaaataattt<font color="green"><u>AAAAGATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAGATCTT</u></font>ggatgtgtagcaacacaacaaattatgtattcctgtttctagattgtacatcggagaaaataattttgttctatgccttgtatgta<br>aggcatacaaggtctggcaacaaagcaaaatattcagataagaaggcacatgatatattctgccttttatggtaggttttacttaactttagcaaaactg<br>gcttcactatttaatctactttctttgttttttaatctgatgccaatttcaatttacagtaaaagggaaaaccttgggcaaattgcctctgttgggcagc<br>atataggtatcattccataactgattatctttggttatttatctcaactggttagaggaagtttttaataatgtttaaaggggctacagatagataaact<br>gtaa	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	464	150	NA	intergenic
0	chr13	63346600	63346899	1000070	0	-	Ya5ac2296; RIP_Alu_chr13_063_01	GAGAAGTCTCACCAGGGCAG	TCAATGTAACCGTGTTCCCA	SINE	Alu	Ya5	agctaagcctcagagacaaatgtaaatcctatagaaaccaaattactcaaatcagaaaaatacttaattaaaaaggacttttgtccaaaaaggacaaaaa<br>gtctcttatcatttcaggagggaagtaaagccctttagtaaagatggcctcataactaaacaaattccaaataaaatgaaaaagcgtctaccaaagaaag<br>gaaggttcagcttgagaagtctcaccagggcagaaaaggcaagccatggaaccagagagttcaaagggctcaagtgagtactcaacaccagtttcaagaa<br>ttactgattctttccaataatgaactttttttggttccactactggacatcgtttaggtcaactaaataacagagagagtctctct<font color="green"><u>AAAAGAAAATAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCCAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAGAAAATAACA</u></font>tttatttggaaataaagcattgcaaatagaatatgtctgccatagtaaaccaggtgtgtgttccaggaggtaaaggaagacaaaag<br>cttttcaggaatgtataagaaagattacataattgttttgagataattattatcttttgctacaagggcgatcccagctcaaggctgggcaggaagttgc<br>tgggcagatgtccttgtagaagcatttttaaaatttttggatgtagaagtttattttttgcagtctttccttatagtttttgttatcaggcatgtatgca<br>taagtattctctcttcatagctttccctagctgtatttatcagggtgtggatttttttcagcacgagttactccattttgattctaaaatttttcacagg<br>	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	955	641	NA	intergenic
0	chr13	38926482	38926791	1000071	0	+	Ya5ac2305; RIP_Alu_chr13_038_01	TTCTGAGTTGGTGACACTCCA	CTTACCCAGGCATCCTTTGA	SINE	Alu	Ya5	gggttttgagtgtatacgtggacttcctaagatacacttcgattgagttcttttattgcatcccctaggcaaatgcaattgatttcagaattattgattg<br>ttttggatgttccaacccagtttcccttcatacttggggataatcaagagctgatttctgattctcaagaaaaatggagaatttaaggaatattagatct<br>caaactatcggtataatcttctaatttgtctcattataaagtattctatttctataggacaggttaataatccagaaaaatgaaactaagatgatcaaaa<br>cctgtagttaatactttaaaatacaatccaacaccatttaatcttctgagttggtgacactccaatttcttctctctaacgtttcctt<font color="green"><u>AAGAGTTGTAAT<br></u></font><font color="red">TGGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTACAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAGTTGTAAT</u></font>caaaggatgcctgggtaagagctgggtttggttttggtacttaggtcttttggtaattccattttagcaccactgaat<br>tatcattagtgctttaaagagctgccttttgtggatagaatgaattattatacatattcatcatttttgtcttcctactgatacatttaaggagtggaga<br>tacaatattttcatccaataggtcacaatgcatataattgctgacattttaaatgcatctggaaaaataaatgttactatattattgtagattatagagt<br>gtccttcacttttttacttttattatttccactttggagattctgtcaataaaagtcaagtgccattccaccctgtgagggtacagggagaagaagctgt<br>ctttcaatca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	398	76	NA	intron:LHFP:NM:005780:2/4
0	chr13	78979409	78979709	1000072	0	-	Ya5ac2323; RIP_Alu_chr13_078_01	CACCCATGTGTCCTTGAAAA	CCATGGATTTTCTGTTTCTGTG	SINE	Alu	Ya5	ggcatacatgtaagtattcaaagaaaagcagaaaaacattcacaaaaatgataaatatcaacttcaggataatgttaaagggattaagagatgaggaaaa<br>gcatagaatgtaaaactttatttcatttcttaaaaaaaaaaaagttcaagatctcaaacaaatacagcaagatgttaacatctattatgtccacggtgga<br>tatagaactatcttttactttatgtttgaagtgtttcatagttttaatatttaaattttaaaaaaagttgatcctgacaagttgtattccacgaatagac<br>atttttaaacatgaaagaagacagaatacacagcacccatgtgtccttgaaaaagcaactaccccatgatgaaaacaagacaact<font color="green"><u>AAAAACTCAATCAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAACTCAATCAGA</u></font>acaaaaaacacagaaacagaaaatccatggaaaagatataatggtaagcactgaatccatttaaatatagaactaaggttaaac<br>atagagctaaagactaacttctggtaaacagaaagcaaatattatatgccctaaaaaagcaaaaatacaacataaaattcagaactgaagaaagagatga<br>caaaacgtatgaacagcactcaacttcatctttcatggcagggatttcatatctcatctaaattttaaacatgcagttttaaaaaatactccgatttctt<br>actgttttttataaactattttcccaattttagtgaactcttacagaacctaagatttttgtggcaaagaaacctttacctagagttcaacatttaccta<br>g	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	413	97	NA	intron:NDFIP2:NM:001161407:1/8
0	chr13	83377043	83377343	1000073	0	-	Ya5ac2330; RIP_Alu_chr13_083_01	TTCACAATGCAAGATAAGAAAAAGA	TGACTGGTAAGTATGGCAAGGTT	SINE	Alu	Ya5	atttgcagttaatgttttaattttctgtaacttttcaaatttctgacttaaagctgttcataatgccttttcaatcttgatcttaaatttcttttattac<br>tgcccaacagaacatttttgagcagatagtaatttctattgatttctaaaataaactacaatttgattacagttacaagtagagtttagtggtttcaact<br>gctaagaaacataagctaacttttatatatctatgttaccatataaactacatactatatgacagtatgacactatggtcatatacctttatacttatat<br>ataaatatatacctatagaatatacattgtatacaatacacatatacattgtgtatgtgtatgtgtattcacaatgcaagat<font color="green"><u>AAGAAAAAGATTAGTGAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAAAAAGATTAGTGAC</u></font>attaaaatgacatttcaaatgctacaataatgatggagttgaaacatataaattaaaccttgccatacttaccagtcacag<br>tgttacattttatgtaccccataaacagattcttttgaaaattcagtattaattttaattaaactttcagtgtttgtcgaattccattttgttcctattt<br>ttcttttatagatgacctaatttcagaagctgcatttgtgctaattagtttcattaattcactattcacttacaacatgtggctataatgtatatgtgtg<br>tatgtatgtatatctttatatatgtgaatatatattcatttataacaaactttttagtaagggactaatgattttattattcaccttttaatatctgagc<br>a	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	430	112	NA	intergenic
0	chr13	85953194	85953490	1000074	0	+	1763; Ya5ac2333; RIP_Alu_chr13_085_01	TTAATGGAGCATCGGAGACC	ATTCTGCTTTGGCACTTTGC	SINE	Alu	Ya5	gcctcagagtctgttttccaggaagtcagtgaagtacaaaagtacactgaggaaagaaaagtacctagactttttgaggacaattaagataaagactctg<br>tgctaactgataactgttgatccaaatgctgaataattttaattcttacttaagcactaaaagggaatacaacacattctatacattccactggctctct<br>catttctggatctcacaggtagagaagtgagacagatatgtcttttttttttttaatggagcatcggagacctatataataaacttctattgtgatagac<br>ttagtgactttggcaagtcttataactgactcatatgagcttactgtattcactagactgtatcatatttttcttattaaccagtattaatc<font color="green"><u>AAAAAAGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AAAGC</u></font>aaagtgccaaagcagaataaaaactatatgtattgacattcatacgaaatgtatttatgtatgtcataatataaatccatgcaaaatgacatttt<br>caccataaaggtcacagtaaaaagaaaaataaaatgttgggccaagcacagtgactcatgcctgtaatgtaagccctttgggaggctgaggttggtggat<br>tgcttgagcccaggagtttgagaccagcctgtgcagcatagtgaaaccccatctctacaaaactacaaaaaattagcctggcatggtggcatgcacctgt<br>agtccagcaacccaagagtctgagctccagaggtcaaagctgcagtgagctgtgactgcaccattgcactccagcctgtgtgacaaatgagatcttg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	471	166	NA	intergenic
0	chr14	58615067	58615358	1000075	0	+	Ya5NBC333; 5330; Ya5ac2388; RIP_Alu_chr14_058_01	TCGGTTTGTTCAAGATGCAA	CCCAGACTGGTGGAGAAGAG	SINE	Alu	Ya5	tttgagttttctaaaagaactctaaacttagaactctaaatttgtagatttaatataaaccatttgggcttttaaatggcatttgaaggcctccatgctt<br>taaaaactgtttggaaaagataccttccaagcaatcaattaaaatacttgagaatataaagcttccatttataaaaggagtgaaaacaaatattttttcc<br>aaacttctgtttgagagaatacgtataaatgttttttatgaaaaactttttaaaatgtaacatttttcagtttaaaaataagttcctaattgattcatct<br>aagacattattataaattaaactcttaaatttaaaaaaaaaattttataccaacaaatcaaaggcaaatataaattaaacttttt<font color="green"><u>AAATAATACTTTTAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAATAATA<br>CTTTTAG</u></font>ttttagatacttttgtttctcagtgtaaatttataccaaaaaaatttaattcccatgtatttgggaatgatagcatgccaaagtgcattaaga<br>tatcttacctatcttacttatctaatttggaatataggtcaaggtgcatgtaacagggctccaaaataacagtgttttgaattcgccagaaattatttct<br>ctcttctccaccagtctgggagtaaatagtgtgatactagcttaggacatctaccccatgaggtcattcagggacccaggctccttctcttattgttgca<br>ccatctctagtatgctccactgattctcatggtccatagtagctcaccacctcatccacatcatccacagttaaaacaaggtcgaaaaaatg	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	588	281	NA	intergenic
0	chr14	82089370	82089635	1000076	0	-	13644; Ya5JW580; RIP_Alu_chr14_082_01	GCAACTCAGAGACTTTACTGTGC	TCCACTTTCACTCTCTGGACATT	SINE	Alu	Ya5	aaatagatactttaaaaatatttcacagtactgtcccaaactgaacatatgcatactccatgacccaatacttttaattctaggtaaatactcaacaaaa<br>acatggatgtatgttcaccaaaagtcatttgtaaaaatgccgataccagcaagccttgaaaaaatgcaaacatctgtcaagagtagaatgaataataaat<br>tgtgatgtattcattaaaccaaatctgttcagcagttaaaacaaataaactgcagctctacctattgtataaaaatagggatgaatctcacgagcatact<br>atgtccactttcactctctggacatttataataaagtgaaaaaaacacagaagaaatgcaaaatatcctacagtttcacaaagtt<font color="green"><u>AAGAAGTTGATTACT<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT<br>AGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGA<br>TCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGTTGATTACT</u></font>ttgggacactaatatatta<br>atttgcacagtaaagtctctgagttgctgtgtagtagttttctaggcctgccatgacaaagcaccacagactgggtggcttgcacaactgaaatctactt<br>tctcagaatatggaagatagaagtctgagattaagatgtcaacacgattgtttcttctgaggcctctctccttggtttgcatgtgattgtcttcgccctg<br>tcttcacatgatcttcctcctgtatgtatctgtgtcctaatttcttagaaggacagaagacatgttgtagtagggcccacctcaatagcctcctttttaa<br>cttcattacctttttagagatcctacagtacagttgctttctgaagtacctgggtttaagtcttca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	424	144	NA	intergenic
0	chr14	99914767	99915083	1000077	0	+	Ya5ac2360; pAlu14-98834954; RIP_Alu_chr14_099_01	TAGACGGACACCTCAGGACC	CAGCCCTTCCCTCTTTTCTC	SINE	Alu	Ya5	ctcctgcctcagcctcccgagtagctgggattacaggcgtgtgccaccacgcccggctaatttttgtattttagtagagacagggtttcaccatgttggc<br>caggctggtctcgaactcgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattacaggcatgagccactatgccctgcccagaaagatt<br>ttttttaacaagtagaaattcattgcagtgtgaatctgtgtgttgggagtgaaatgggtggatttggatcatgccctcagaattgctccctgcacacttg<br>ggtagacggacacctcaggaccttagccttgtgctgtgggcctgtctgtccagctggctgctacagagatgggatacctggggg<font color="green"><u>AAGAATGTTCCAGGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGTTCCAGGCA</u></font>gagagaaaagagggaagggctggagcacagggaaagggtgcaggggaaagtggcaggcctttcccac<br>catggatcctggacgtcttttgatttcagtattttcagacctaccctcgttcatgatgatgagcatatgttctcacttgttgctaataagcagtgcggca<br>ggttttctttatacatttatcttcatggatttatacatctagcaaacatatgctagtatttgtgtaggataaagttctacagtggggttgctggggtgaa<br>aatgatgtgtttaaacttgtaacacatatgaccaaaatggaccttccaaaggcatttttaaagtcctgtctctttctctgtaggcattgtctcttcaggt<br>cttctttttttttcttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	453	126	NA	intron:WDR25:NM:024515:1/7
0	chr14	64596912	64597181	1000078	0	+	Ya5ac2366; RIP_Alu_chr14_064_01	TTTGGTATGGGTACAATTTTTGC	ACCCAGGTCCTCTAGTCGGT	SINE	Alu	Ya5	caggctggtcttgaactcctgacctcgggtgatccatccacctcggcctcccaaaatgctgggattacaggcatgagccaccgcgtccggcccccttttt<br>cttgattataaatgtaaatacatgtttattgttttaataattgggatacataaaatataaaaaagaaaatgaaaaacaatcatatcactattaatatttt<br>ggtatgggtacaatttttgctatttatatacatcacaggtacaaatacactttttaaaaagtttgagaccaggtgtggtggctcacacctgtaaccccag<br>cactttgggaggccgaggcgggtggatcacctgaggtcaggagttcgagaccagccggaccaacatggtgaaaccctgtctctact<font color="green"><u>AAAAATACAAAAAT<br></u></font><font color="red">AATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATAC<br>AAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTG<br>AGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAAATACAAAAAT</u></font>tacccaggcgtggtgg<br>ctcacacctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacacaggaggcagaggttgcagtgagctaagatcgtgtcaatgcact<br>ccagcctgggcaacagagcaagactctctcaaaaaaaaaaaaaaaaaaaaaaaaacagtttgagatagtattgtacatactgttttctcacataatatgt<br>tgtaagtatttgcctgtatcgttaaatatttaaatgcgtgtttataatggctgtatattaacctgtgtcccatgtactagatagttttagcaaatacacc<br>atttttgaacctttgggctttgtgtgtatctctgattccttatactaaattcttagaagtgcctttcatg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1068	802	NA	intron:FNTB:NM:002028:11/12
0	chr14	25075653	25075887	1000079	0	-	Ya5ac2369; RIP_Alu_chr14_025_01	TAAGGGTGAATGGGAACCAG	CAATCCAATACCACAGGGCT	SINE	Alu	Ya5	agtgaactagagagcattaaaaattaagaaaattaaagttcttctttgtttcctccttttctggaaaatttaatatgaaagccgttcagttggaccatct<br>gggatagtaatgagggaagccacgatggcccaaagctatgcattagaggccttggaaataagaaaggggaaggtgggggagagcgatcatcatgggcatc<br>agagcctgagtggggtgaggagggtgtccaggtgcaggatctggaacatagcaaaatgtcacatactgagcaaggtaagcagtgcattacacacagaggg<br>attgatcaaaagattgactatgtaagggtgaatgggaaccaggttcctcactaatgaggaaaggagttacaaagaaagaacact<font color="green"><u>AGAAAAAGCCCTGTGG<br></u></font><font color="red">GGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGTCTGTAGTCCCAGCTA<br>CTTGTGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAG<br>ACTCCGTCTCAAAAAAAAAAAAAAAAAGAAAAGAA</font><font color="green"><u>AGAAAAAGCCCTGTGG</u></font>tattggattggatgcatccatgtgaaatcagattttttcttatacagat<br>aaatagatgtagtaataaatacagattgagtcaattgccaacatgatgtccccatcaccctaggataatttagtgtgcattcctttcctacaaagaagga<br>tattctcctacctaagccaatccagaaatgcaggtttttccttttttaggtgtctgcctggctgccactgccacctcagcagtacatgtctgtcactgga<br>gctggttttagggcaggccaggagagagaaaagagggggagaaacaacaacaaagatcttccccattctctcaggctcataggaatccccattcctagtc<br>ctctggtcagaaagacaggattcccccaaaaattt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	341	90	NA	intergenic
0	chr14	51664432	51664730	1000080	0	+	Ya5ac2376; RIP_Alu_chr14_051_01	GCTCTTCATGGGTTCCTTCA	ACAGAGCCTTCCCTCTGTGA	SINE	Alu	Ya5	aacagccttaggaactacccttggtaaggaatcagaagatcatgggtctacttcagacggactctaccaaatttctctcagcatggccttggacaagttg<br>cttatttctattcatcttcctcatcagcaaaacagactcttcatgaaagggctcttcatgggttccttcaaggacataggtgtgttaaagcaaaataaat<br>atagcctgagaaggactccattcttctatatttgagtccttggggatgaactgtaacctagcttaataaacaagattgaaaacctaacttaggagtatgc<br>atctgtaacaatagctgagtcttggccaatcccagcagccatacttcaactactcacacactgatgagtgttcagactgtgttc<font color="green"><u>AAAAAAGGCAAATGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAAGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAAAGGCAAATGCC</u></font>aacctgcaatcaatccagctgttctgtgcgtcacttccggtttctgtaggtcatttccctttttttgtctataaatcttcttcca<br>ccacgtggttgtgctggagtctctgtgaatctgctgtgactctgggtgctgccccattcgcaaattgttcattgctcaattaaacttctttaaatttaat<br>tcagatgaactttttcttttatcaggtgtcacctaacatacaagtttttggactaattctgcaaacatatggtatgaattaaagcagtggttctcaaagt<br>gtagttcccagaccggtagcatctgttgggaacgtgatagaaatgcacattcccaggccccatccttaacgaactgaatcagaaactctggggcttttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1173	858	NA	intergenic
0	chr14	51826549	51826863	1000081	0	+	pAlu14-50746736; 79667; Ya5ac2380; RIP_Alu_chr14_051_02	GTGATCACGCTGCTTTATGC	GTGATACAACTCACTATCTGGC	SINE	Alu	Ya5	tttttataaaataagcagaatatgtttatgctggactgtgtttcagcataggctgtgatacagacctacaattctttggtgatgctaaaggcaactcaag<br>aaagacaaggaatgatccttcaaagcagctcaaacaggttcaacaagaggcttgagtggaagatacctgccatatgtaaaacggtactgtgggcagagaa<br>aatgaacagtgtttcaaacccaagccccaggctggaaatcataaggacagaatctctgactgttaaatgtagatttgtgatcacgctgctttatgcatgc<br>aagactctgtatactgccattcaggatgagtaccatcaggattctatttctttgataaagatgaacgattctccaaaacaacac<font color="green"><u>AAGAGAAGCCAGATAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGAAGCCAGATAG</u></font>tgagttgtatcactgtagtaggcagcttctaaaagagctaccaatgatcccggtcttcaggtctccagg<br>tattcatgcccttgggtaattctttccctgcaagcatgatctggacctacagacttgcttctaaggtgtggaatacagcagaaaaacatctggaaagtta<br>cacctttccaaataagccttggttgcttgctcgctccgatggaaaccagctgctgtgctgtgagctgtattgtggagaggctcatatggcagaaaatgga<br>gggaggccactggccaacagccagcaaggaatagaagctcttagtcccacaacccaggaggaaccaaatcctccaacaaccacatgaatgttcttggaag<br>tggatccttccttcc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	468	141	NA	intergenic
0	chr14	25216955	25217297	1000082	0	-	Ya5ac2389; RIP_Alu_chr14_025_02	TCTTTTCCTCAAAACAAATTCC	TGCGTATTAGTGAAATCATGCAA	SINE	Alu	Ya5	tctaacctgggacagatatactcatcaaaaattctggggccacaactcacatcttcacaaccagagataaaaaaatctttactgctgcactaatttctag<br>ggaagagtttttgtttgtttgctttctattttctcttcttctagaaattagtcccagtcctggaccacttgatatagtaataggaataaggtagattgtg<br>gaatgtgtcgattgcttacaccaatggagcaggcaatatgttagtaggcttcccaaaatcagatggttgaccaggatacaaattacccaagtattcacct<br>gagaaagagagaaatgaatgctgataaagcaaaataaatgtcctttgacatatcttttcctcaaaacaaattcctatatcagatta<font color="green"><u>TAAACCTTAAATTC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATAA<br>AATAAATTAAAAAAAAAAATAAAAAATAAAAAAAATAAATAAA</font><font color="green"><u>TAAACCTTAAATTC</u></font>atagacatgatttaatagtaatgtttcaatatgatgacatcta<br>tttaatactagaagaatttcagtctaattttgcatgatttcactaatacgcattttagttaaaatgatataaccagagtcatggttaaggctcagttgtg<br>ttcccccaaaatttatatgttgacatccttgctgtgtctttaatataaagacctgaatattgtcagtagtataatgtaattatccaaatcccaccgggaa<br>aacatttgggaaaaaataattgtttttttccattgatttctcaatatgcatattcctaatctcttacatctatgcattaccactgattttaaaaactacc<br>atttttatcacaggctgcctccacatcaccatttttcttccat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	168	NA	intergenic
0	chr14	65880398	65880694	1000083	0	-	9480; Ya5ac2390; RIP_Alu_chr14_065_01	CTCAAATGTTTGCAAAACCC	TTCCCCTGATTGAATTTTGG	SINE	Alu	Ya5	cgggtcttcggggtttaataacagcagtaacatactataccttttttccaaaatgatgcccaaatgatgtataaactttttgtgatgtaattaccaccca<br>tcaatcacttcatttctgaaatatggtggcttctgatgagatgagattgctttccacattctcattagtttacgaaggaaagagaaaaaaatcttgcctc<br>tgttagaaaagcaggtaaggatagaaaggtaatttggttacatattacacaaaaactgggtaagaaaggaaaaataatgtcattatacataggctcaaat<br>gtttgcaaaacccttttacatatatagttaagtttaatcctacagatctatgttttggtagcagtggatttatgcaaatcatttt<font color="green"><u>AAAAAATGTCCCCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGGGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AAATGTCCCCAA</u></font>acgtaaatctagtggtttatatcaacatcccaaaattcaatcaggggaagtttctatagcctttctatatttaataaggcatttggca<br>tgtttttcatagattaaaaatgctaataatcaatataccaaaaatagatattcttataatgtttgatgagtcataattattgataggtaaacgtgttgaa<br>attgattattgcaacattaccctatctgttgctaacttatcctaaccctagatagatagacagacagatagggttattgctctctctctctctctctcta<br>tatatatgtatgatatatatataagatgtatatatgatatatataagatatatatatatatctaaggctgagaaggagccatgaggaacagtaagtt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	468	172	NA	intergenic
0	chr14	86625655	86625960	1000084	0	+	Ya5ac2410; Ya5_432; RIP_Alu_chr14_086_01	CCCCAAACCAATCAAGTAGG	GGCTTTTCCACTTCATGACAA	SINE	Alu	Ya5	gttaatgtattatggcaattctaaggtgtaattatcttttaaaaatatatttttggttctgaaagatgcacatacatagtaatacaaagagttattagag<br>actttttatgttctctgcatcgttctaagtactcttcattagcttgtttagttctcaatacaactctgtgaaatagagactattatttattcatattttt<br>tggatgacagaatggagagacaggagatttaatatatggccagggtcataaagccagtaagtgatagaaccggcatttgaacccaacccaggtattctgg<br>ctccagaatccatctttttattctctacatttaatagattagtcatataaatgttgggcttttccacttcatgacaatgagattt<font color="green"><u>AAAAAACTAATGGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGCAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGGGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAAACTAATGGTC</u></font>agccatataactgacatgtcctacttgattggtttggggtgtgaattaaatcacatgtcttttaattaccaactaccat<br>aactcaacgcccttatcagaccacagaaagacatccttcctttttctctccaagtcaactccattccctaaggatgcatactcatacaaatatcagtctt<br>gatcagggttcccttttgagctgaaataagggaaggagactcagtgctactaaaatccccaccaggagctggttatttcagaacagaagtcgtagcttat<br>cctgctaccactgtgaaaaaaactgtgtgtcaaaactgaagaaccgtggccattgacaaggcgtttatcatggtggtaccaagtgagaacctactaggac<br>caactg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	472	151	NA	intergenic
0	chr15	37054309	37054650	1000085	0	-	Ya5ac2434; RIP_Alu_chr15_037_01	GTGCCCCTAGGATGAAAACA	TCTGTAGGCTGAAAAACATTGC	SINE	Alu	Ya5	tcttagattcctctgcctcttgagtcactagagctatttgactaaggggtgggcaaaataaataccagtctatcatttggcatagaatctttgggggaac<br>atagttccgtgatgtgtaataaggtttgtgtgggataggtgagtagagttgctccttaatttaccatggcagagagagggaatcaaggacagagaggtgg<br>tggctggtataagagacctggaagaaagagtccctccttgaaggtgggcatggcgatgaaactgcccatagccaagtgtgtatttcgccactaagtaagg<br>ctaatggccaatttgggatgaggagataaaaatgatctataaagtgcccctaggatgaaaacatatggcctatttccaagcttaaaaa<font color="green"><u>AATAAATTTTTC<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAATAATAATAATAATAATAAT</font><font color="green"><u>AATAAATTTTTC</u></font>ttataggcccatataaatgatttagcaatgtttttcagcctacaga<br>tataaaatcattttaataatcacaatcagcctcatttttatcccatggattgggataatatagaatagtgcattcccaagtagcaaggataagtattgtt<br>ttgtcaaactgtcttagttgtgcatctgtgtgtgtgtgtgacacatggacgtgtgcacagagacacagagagtcggacaataatataaaatgcatttctt<br>actcaagttactctcagaaatgtttgaaagccacgcctctatggaaatcttcagttattttttgttttgttagccatggcatttgtaaacatttctgaaa<br>attttcctggcttacgtgtaaataccctatttgtttctaaag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	457	105	NA	intergenic
0	chr15	54151130	54151434	1000086	0	-	Ya5ac2456; RIP_Alu_chr15_054_01	TGTTTTTCCTTGCCACACTG	ACAGCCAGTCTCTTCGTGGT	SINE	Alu	Ya5	ctttaccccacattatatacataatagtctcagtctattcttattttcaaggtagtattaagtgtccatatttatcaagccacattcaaggaaatcatgt<br>cttaactattttggatgttgcctctccttcaacttgtacatgaaactccagcagatttaatattggcatgcatcatctagtcaaacctctcacatgttct<br>tcaaatcaatcaaatttgggattctcaacattttctgtgtcaataaaaggaatggaattagtagattcgatgaataactgtttttccttgccacactgga<br>cttccagacgccatttggattgggtttagaagatggggaagtttagaagatgtttcttggcctgagtctcttaagaggagagatgtag<font color="green"><u>AAGAGAGAGTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCTTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAGAGAGTAA</u></font>gaccacgaagagactggctgttgactgcagggcaccaacagccgccttggtggtggcagtagctggatttggggcagtcgaag<br>tactctgggaggagttacttgaaattgttacaacagttgtttgattggaataaatctgcgtgggtaggagcagtgccagcagcagcagccccagcccaag<br>cctggccaccactgctctgcccacgtcccctccgtcggtgtgcagcgtgtctggctggatgctgggtgcttggagaactgctcgctccaggagggcgcgg<br>gcaaggacgataacaactctttatcagattttcttttgcaaatattttctcccattttgtggcttaccttttcgttctcttgacaatctttttcagataa<br>cagaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	459	142	NA	intergenic
0	chr15	91316803	91317104	1000087	0	+	pAlu15-91102932; Ya5ac2458; RIP_Alu_chr15_091_01	TCCCCAACCTTCCTACACTG	GGTAGCCTAAAGGCATGCAA	SINE	Alu	Ya5	ctttaagatgatttttaaaatatggatttgtagagattagggaagattaaaatttgtgtttcaacataattattggaatgtcttttaaatcttcagtccc<br>tcataaggagcagtgggaagttgattttattagacaaactgttgacaagacttcgagaaagggggaatcgagtgcttatcttctctcagatggtgagaat<br>gttggatatcctggctgaatacctaactattaaacactatcctttccaggtaaggtgatttcagtaattgctgtggggggaatcaatctctctctccgcc<br>tcccctccccaaccttcctacactgggttgtatgctttgcttgttaaagtaggaagtaagagttttcttgtttcaaagaagttaaggtt<font color="green"><u>AAGATTCCAGG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGATTCCAGG</u></font>agggtcttaatttttacttgcatgcctttaggctaccatatgaaagtggtcatgaggagacgattctttttttgaaggtgggtgggg<br>aggattagagaaagtcaaacggggcaagataaaaaaaggatgtcagatggcatcttattgcatgtgtatggtgaaagtagagaggaagtaagtgtgagct<br>caattccaggagcccaaatcctagaaggagagggcagtatcagacattccccccaaaagttgaccctggctgtgaggctgggaacatagcagaacactgc<br>tacttaaaaccttgctactccctgaagtaagtgatgatggcttcccctattttctgtggagttccttaactggagttactgtcttcacacagttatctcc<br>ta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	445	132	NA	intron:CHD2:NM:001271:19/39
0	chr16	56848421	56848721	1000088	0	-	Ya5NBC57; RIP_Alu_chr16_056_01	GACGTAAAGAGATGTTGTTAAGTGAAAAAT	ACTGTAGGAGGTAAATGGAAAGTCAACAGA	SINE	Alu	Ya5	attagtggggaaataaataggcactcttattatatttctgttattaaaaaaaaaaaaagactttatatttccaagcctgagtattggggggaaaaatgga<br>aaaaaaaataaagaagatattataaagtcaggtatggtgcctgtagtcccagctgctcaggaggctgaggcaagaggattgttggaggccagaagttcga<br>ggctgtagtgtgctatgattgcgaccgcgaatagccactgcactccagcctgagcaacgcagtgaggccccatctcttaaaaataaaaaaaaagatgtta<br>taaaatgaaaatatgtattgacgtaaagagatgttgttaagtgaaaaatacagtttacaaaataacatgatactatttttgga<font color="green"><u>AGAAATTCATATATGCA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AGAAATTCATATATGCA</u></font>tagaaaattatctaaactgtaggaggtaaatggaaagtcaacagaaattacctctgagtggtaaattgtgaatgttttcaaa<br>tgttcttttagcttaactgtatttttcaacattctacaacatagattgccttgaaataagaacacacacacacacatattactataaaaaataaaatgga<br>atggtatctctagccagactgcaaatcatcctagttcagactttttttctgaacaccaagaggcaaaagcattttcactggccggcctcaggctccagcc<br>ccatcatctccacatggtagaacatcaacccacctgaaatgctactttcaacacattgctctcctactcaagtatcctcagtggggtccagctttctaag<br>a	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	444	126	NA	intron:CCDC113:NM:001142302:2/8
0	chr16	19413837	19414136	1000089	0	-	Ya5-MLS63; Ya5_4532; RIP_Alu_chr16_019_01	ATGAAAAGGGCCCTGAAATC	TTGCAGATGCCTAGGGAAATA	SINE	Alu	Ya5	ttgcatgccaccgtgcctaattattaaaattttttaagggatggggtctcgctatgttggtcttaaactcctggcctcaagcagtcctcccctcccacct<br>cagcctcctgagtagctgcgattataaacgcacaaaaaataattgtaacaaaatgtttcattacctactgttttaagtatttaaaaacatagaaacaacc<br>caaatatccaaatatgtacagaattaaacatcgttcaagatatagtatttagtggtgggctgcgggggagggaagttatgatactatttgtataatatag<br>cctcacttttgtaataaacaagtaaattaaagtgttggtagatacaggtatgtttgcagatgcctagggaaatagatttgc<font color="green"><u>AAGAATAGACACTGAAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGCGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGAATAGACACTGAAGTA</u></font>ttcatagtgagatgagatttcagggcccttttcatctcagtgggatctacttctgtattatcggggttgtgaaaaacaagc<br>gtgcaagttccatgagggcgggggctttgttttgttcaccgtaaccccagcacctagaaaaagtacaggcatgaaaagtgctgaaaaaatgaatattact<br>tttttttgagacagagtgccactctgtcacctaggctggagtgcagtggcatgattttggctcaccgcaacctccacctcctgggttcaagcaattcttc<br>tgcctcagcctcccaagtagctggggctacaggtgcgtgccaccacacccagctaacttttgtatttttagtagagacagggtttcaccatattggccag<br>	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	401	80	NA	intron:TMC5:NM:001105248:20/22
0	chr16	25531065	25531362	1000090	0	-	Ya5_531; RIP_Alu_chr16_025_01	GCAAACACAGTGCCACAAGT	TGGGGATGTGACCCAAGTAT	SINE	Alu	Ya5	ttgatatccaaatatatcaagatttctcaaaaatcaatatgataaaacactaaaatttaatagaaaattgaacaaacaatataaagagacaatgcacaaa<br>atgaagaaatacaaattaaaagatgtggaaccttaatagtaatcccccaaaatgcaaaataaaacagtgatgtttcatggagtttattattccaatacaa<br>tagcaatgtttaggcaatacagttgagcatccctaatctgaaaatccaaaatctaaatgttccaaaatctgaaaatttatgagggcaaacacagtgccac<br>aagtggaaaataccacacctgacctcaagtgatgggtcacagtcaaaatgcagtcaaaatttgatttcattcacaaatttgttagaaaaaa<font color="green"><u>TGTTGTGTA<br></u></font><font color="red">GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAA<br>AAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAGCCCGGGAGGCGGAGCTT<br>GCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TG<br>TTGTGTA</u></font>aaactaccttcaggctatgcatataagacatatatgaaacataaatgaatttcatgtttatacttgggtcacatccccaagatatctcattat<br>gtatttgcaaatattctaaaatgtgaaatttgaaatccaaaacacttctagtctgaagcatttcagataatggatactcaacctgtattaagtgcctgtt<br>gatgagccttttcataagctgttggtagatcaaactggtaatttttccagagggcaattcaatagtaccttcatttaaaaaaaaaggaaaagaaaagagg<br>gacaggtgcggtggctcacacccataatcccagcactttgggagggtgaggagggcagatcacttgaggtcaggagtttgagaccagccgggccaaca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	502	195	NA	intergenic
0	chr16	16481312	16481598	1000091	0	-	Ya5ac2480; RIP_Alu_chr16_016_01	AACCACACCAACCAAATGTGT	GCATGTGAATTGACTGCTGAA	SINE	Alu	Ya5	gtcccagctacttggcaggctgagatgggatgatcccttgaatctaggagttaaaggctgcagtgagctacgacttaccactgcactccagcccgggtaa<br>cagaacaagaggctgtctcaaaataataataataataataataataattattattattattattattattattattataatttcatttaaaagaaaaaga<br>aaacaagaacccagctttacaactacaaggtaagtcaccagcaactgccatgaggacccattgtctaaaccttttaatgtaaaataaaactacattagaa<br>accacaccaaccaaatgtgtagcttcttcagcctttccttatttttctaaggttgtacaaaactattgtatttacaaaaatggcac<font color="green"><u>AAAAGTGAATTCAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCGGGGAGGCGGAGCTTGCAGTGCGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA</font><font color="green"><u>AAAAGTGAAT<br>TCAG</u></font>cagtcaattcacatgcatacttccctcacatcttcaacaacaaaaggtattctaactctaactctacagagcttggcagttttcaggagtactggg<br>gacggattttgcaggatatatctctgtattagtccattttcatgctgctgataaagacatacctgagactgggcaatttacaaaagaacaggtttattgg<br>acttacagttccacgtggctgtggaggcctcacaaacatggtggaaggcaaggaggagcaagtcacatctgatgtggatggcagcaggcaaaaagagctt<br>gtgcagggaaattcccatttttaaaaaccatcagatctcataagactaattcactatcacgagaacagcacgggaaaaacctgtccccat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	421	131	NA	intergenic
0	chr16	71310800	71311098	1000092	0	-	12465; Ya5ac2525; RIP_Alu_chr16_071_01	CTGAGAGCTCCACGAGGGTA	TCCATGGAAGAAGCAACACA	SINE	Alu	Ya5	ctccagttccttgtctctacactagccatgctggcttcctttctctgtcattcccagtctttcttgtcccagggctttacacatatcggtacctttccct<br>ggaaggctcctccctccctgctttacttttccttcaaatatcacctcatttatcacttcattaagaaagccttttctgactagatcaaattttcctgtta<br>caaactcatgttcctttctctcatagaacttattacagtggcaggtttacatttattgtgtcatttttaaattcatgacagactcttcaaatccactgag<br>agctccacgagggtagggaccatgtctgtttttgattaccactgtattctcaaaaggtagcagaatgaatggaaaaagtaggagtttaacaaac<font color="green"><u>ATCTAT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>A<br>TCTAT</u></font>gactgaattatgaatgaatgaatgctggggaatggcagccaatggtataataagttaaaagatgtatgttgtgttgcttcttccatggatatcaa<br>acacccaaattccaaaggttatacacagtgaacaaaaatgaatgacagggattgtaaaaatgtgggaggtataaagtacttcttttaggttgataaaaaa<br>atactgcccccccaaagaaaaattgttatttgaaaatgatagaattatgagtgttatttgtattatttttgctcagctaaattttctaatattttccata<br>atagtgtattaatattgtaagcatgttattttttactgcaacataaaatcattctggcttcagtgcagcagaaaaccaaagtacctaggaggggcagca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	499	194	NA	intergenic
0	chr17	58919633	58919634	1000093	0	-	Ya5NBC102; Ya5ACE; RIP_Alu_chr17_058_01	TCCCATTTCTCTAGACCTGCTG	CCCATAACAGGTCTTCATATTTCC	SINE	Alu	Ya5	acacagccaggctctcccaacaccacattacctgcctcctccagggatctaccttttcctaggcttggggtttcacagcacctctttgaggaaaatgaag<br>ggacccaagtgccagtgatgttggcagcagggactcaccattgagccgggcagcctggttgatgagttccacgtatttcgggtaaaactggaggatggct<br>ctccccgccttgtctcgccagccctcccatgcccataacaggtcttcatatttccgggatgtggccatcacattcgtcagatctggtaggggtttgaatg<br>ccttgagctccagcccttagctcacctctgcttgtaaggggagctcagagaatttcagagctggaataaaattggcgaaaccacat<font color="green"><u>AAAAGTGACTGTAT<br></u></font><font color="red">CACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTAC<br>TAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAG<br>CTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAAGTGACTGTAT</u></font>aggcagcaggt<br>ctagagaaatgggagaaaggatgggagtggtctccagcagtggcttacagagtccccggcctggggcacatgctgcagacacctgcagggcctcagcagt<br>cctgtgaggggcgtgcttgagtctctctcctctcctttttttttttttttctttctgagacagggtctcactctgttgcccaggctggagtgcagtggcg<br>ccatctcggctcactgcagccttgacctcccaggctcaagcaatccttccatctcagcctccctagcagctaggactacaggcatgcaccaccacatcca<br>actaattttttgtattttatttgtagagacggggtcttgctgtattgccctggctgggctcaagcgattctcatg	Other	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	483	194	Hypertension	intron:ACE:NM:000789:15/25
0	chr17	14688276	14688578	1000094	0	-	Ya5NBC120; RIP_Alu_chr17_014_02	GGACCACATGACTGAGTGTAAAGT	GAGGTGGCCTCTTAACCATAATTC	SINE	Alu	Ya5	accatcctgcagtcttggctgagcaccaatttgccagctatgagagtgggccatcttcacagtggatcatctgacccccagtcaagctgctccagcttat<br>gctgcatgtagactggactagcagtcttcacatagtccttcccaaattgcagtgtcgtgagcaaaataaataattgttgtcttagcctgaagatctgcga<br>tggtttgctactcagcaatacaaaactgatggaccacatgactgagtgtaaagtatatatttgagcaatgaaaataagatgggtgagtggtattgggccc<br>aattatggataacccttatgagggaatcagatgtgttctacttggcaatattaattataagagatataccagatggaggaggtt<font color="green"><u>AGAAATGACATTAAGA<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AGAAATGACATTAAGA</u></font>gaccagaattatggttaagaggccacctcattaactccagcatgagttgataaagtctagcattaggtctatcatggtaga<br>aaaaagcagataaggcagttgagacattaaaaattaccaatagtacacattttctgaataaaaatgagctatgaggttgggattaacactgctgagtctt<br>tcagcttttttttttgagatggagtctcattctgttgccaggctggagtgcagtggcacgatctcggcttactgcaacctccacctcctgggttcaagcg<br>attctcgtgcctcagcctcccaagtaattgggactacaggtgcatgccaccacgcccagctagcttttttgtatttttagtagagataaagtttcaccat<br>gtt	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	518	199	NA	intergenic
0	chr17	12137318	12137621	1000095	0	+	pAlu17-12139548; Ya5NBC160; 3797; RIP_Alu_chr17_012_01	CTCAGCTGTGCCTGATACTCTATAA	GCCTACTGGATAAGTCACACATTTT	SINE	Alu	Ya5	tttcactgtgttaggcaggttggtctcaatctcctgacctcatgatccacccgcctcggcctctgaaagtgctgggattacaggcgtgagccactgtgcc<br>tggccctccaattttattaataaattatcacccaggcagcgtcttaggcaattttctggttgtccatgagacactctttaagctcagaattttaggccat<br>aaaatatagttcaaacgatgctataaagagttaagagagtttccaaagaatgttgggtagaccttgagaaactatttagctcaggcgtgcaatgtttgtg<br>tgacttctcttgctcagctgtgcctgatactctataaatatgccttatttatcttcttcatattttcattatttaatgttcttcttt<font color="green"><u>AAACATACTTTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAACAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCGGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAACAAAAA<br>AAAA</font><font color="green"><u>AAACATACTTTTG</u></font>gggctcctatattgcccagttacagctctttttaagtttttatgttccaatataacttaaaatgatttcagggcctttggtaa<br>tcaatagtgttatcaaattggggggataatatatcaaaaatgtgtgacttatccagtaggccaagtattgaagcatgggcttccatgggacagcagttat<br>tagcccatcaggagggaaaagccattgtaactttccttatgcttagggaatcctgagtctcatcttcccttatgcctgtcctactagaattctatggttt<br>atatcataatcttcctcaagaagattgggtctttttgctcaaatttctaaaatttgaaaacttaacatccataggactgttttttaaacgtgaggatttt<br>gatt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	551	234	NA	intergenic
0	chr17	62361017	62361318	1000096	0	+	Ya5_421; RIP_Alu_chr17_062_01	GAGGCTGTGACTGCAAAGTG	TTCGGTGTTCCAAAAACAGAC	SINE	Alu	Ya5	ttgaaaattggcagatttgtctcttcagtacctgctatagagctgaggcaggaagggcctgacatcccgtttacattgacaacaacaaatggtgtcagca<br>ccatgctgaccactgacactgatgacattccttatctcagcaatcttaggaggcaggtcctggatcagttcccatatttggatgaggaaatgggagccca<br>gagaggtgaaagaccttgcccagggtcacacagctcatgggtagcacagctgggattcaaactcaggaggctgtgactgcaaagtggatgttcccgctgc<br>agcaacaggcagccttcccaaggatcacttctcaattgtaggatgagtgggcaaaagagccagtgatcctgcacttctgggcaggt<font color="green"><u>AAGAAATGACATCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAAATGACATCT</u></font>gtgcaagattagtcatggcaagtctgtttttggaacaccgaagtctgttctcatgctgctaataaaaacataccccagactggg<br>taattataaagaaaaagaggtttaatgaactcacagttccacatggctgaggaggcctcacaatcatggtggaaggtgaaggaggagcaaaggcacatct<br>tacatggtggcaggcagagagagggagcatgtgcaggggaactcccctttataaaaccatcagaactcgtgagacttattcactatcatgaaaacagcat<br>gggaaaaatccacccccatgattcaattaccccccaccaggtccctcccatgacacgtgggagttattacaattcaaggcgagatttgggtaggaataca<br>gc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	493	177	NA	intergenic
0	chr17	64599262	64599557	1000097	0	-	pAlu17-67552076; Ya5_435; RIP_Alu_chr17_064_01	CTGGCGACTAAGGTGAAAGC	AAAAGGTAATCCCTCTATCCTCTTG	SINE	Alu	Ya5	ataagatctgggaaagaaagggtagtgctcaatacatacttggctgatcaattgattcttaaaacaaacaaacaaaattatccttattccttcccatttg<br>ccagtaaaaaaaattgtaaaataaaataagtccatcacaataaaaatacacaatctcagaaaagtcatttgtttggaatggggaagaaatggagcaggaa<br>ggacaatgagaaagctccacagtagtctggttgagagacagtatggattgtttggtttttttttataatagccatgtaactttcaacatatacaggtttt<br>tattcattagcaatattgttaccttagccataaaaaggtaatccctctatcctcttgtcttggattaaatttaataatacacgtc<font color="green"><u>AAGAAGTCTATTTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAGA<br>AGTCTATTTGG</u></font>tcattttagctttcaccttagtcgccagtctttattaagaattttctattggggatcataatgtattcttgttaacaaaagcttcttcc<br>ctattgtctctaaaaggagaaactatcattgtcaaatgggtatatctgcatatgggaacattatgatatacatcatgagaacacctgcatcttaaatgtt<br>ttacaaaatatcaatgggttgagtatgtctgatacaatatatttgaacttgccttgtaggcctccaccatcatgttttccatcactttaatcaatcattt<br>tgacctaagtatattgattaccaccatggtattggttccttcatataccttgcttggatttaaaacttttttggaagtggtaagaaatgttaccaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	407	96	NA	intron:ABCA6:NM:080284:25/39
0	chr17	13161224	13161529	1000098	0	-	Ya5_454; RIP_Alu_chr17_013_01	AAGCCTAGGACACACGCATAA	TGCTTGGCACTTAGTGTTAGGA	SINE	Alu	Ya5	aaacaacttctgcttgcaaaaatggacccactgtccacattttttgaaagcagcacaggtaaagaacaaagccttaagctttcactccatcgagtcaaag<br>ttcctagcagtctaagtgcagatgcattataatttgtgggttttgttgtttgtttctagaggatccctccagaaaatcttctttatcttcttcatgacta<br>aacttccacagggcctgtcttgtgtctcataagcagcttccatctttctccataaacacctcttgtattttcaaacataatggcgcatctcccacgaaaa<br>actgaaagacaaatagggatatgtaagaagaaatgcttggcacttagtgttaggattttcaacactaagttgttcatgt<font color="green"><u>AAAGATTCTGTCTTTACCCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AGAAAA</font><font color="green"><u>AAAGATTCTGTCTTTACCCTT</u></font>tcattatgcgtgtgtcctaggcttttcaagtgaacatcagcatacaagttatttgcttagaacagagctgtaa<br>gagtaaaatgcatgaacacagtcgaagcatctggttgggaccatggccacctgtcagcattggatgctccctttggtgtgtttcagtgaaaatgaataaa<br>ccgcatttccttttaagccactgcattgagttgggtctactttttatagcagtctagtcttaccctagcaaatacattctctcagctcaatgtatattca<br>tgtgttgcttaacaacaaggatatgttctgagaaatgtatcctgaggcaatttcttcattgtgcatagcctactggtactaggctgtgcacaatggtcta<br>acctat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	59	418	91	NA	intergenic
0	chr17	78182448	78182749	1000099	0	-	Ya5ac2539; RIP_Alu_chr17_078_01	AGTTGACAGGTTTTGCCACC	CAAGACAGGTAACGCAGCAA	SINE	Alu	Ya5	ctcagctcctgagtggctgggactacaggtgcctgccaccacgccggctaatttttgtatttgtagtaaagacagcgtttcaccatgttggcccagatgg<br>tctcagtctcttgacctcatcatctgcccgcctcagcctcccaagcattaaagcttttagtatgctgtcttggagttgacaggttttgccacctcttgaa<br>atgtgaattcaagtatttcatacattttgctgagttagcttcctagggtgttgtgtgctcagcctttatgaaacagtgaacatgatgacagtaaactgag<br>agaatttggaaacctagcactcactatttttttagccagtcacctttctcatttctgacgatagttagatataaattgctgatt<font color="green"><u>AAAAATGAGTCCTGTA<br></u></font><font color="red">GGCCGGGCACAGTGGCTCATGTCTGTAGTCCCAGCATTTTGGGAGGCCGAGGCAGACTGATCGCCTGAGTTCAGGAGTTTGAGATCAGCCTGGCCAGCAT<br>AGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCACATGCTTGTAATCCCAACTACCTGGGGAGGCTGAGGCAGGAGAGTGGC<br>TTGAACCCAGGAGGTGGAGGTTGCAGTAAGCCGAGATCGCGCGACTGCACTCTAGCCTGGGTGACAGAGCAAGACTCCTTCTCAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAATGAGTCCTGTA</u></font>ttcccagctacttgggaagctgaggcaggaggatcatgtgagcccaggagttcaaggctgcagtgagctgtgattgtacctg<br>tgaatagctactgcattccagcctgggcaacacagtgagatcttgtctcttacaaaaaatagaaaattgctgcgttacctgtcttgactttctcttttct<br>tttttattgtaaaatatacatattaacttgtaacattggtctttttaaaactatcatttcagaatttctagaaggaggagttggccatgttgaaatgtta<br>tttcgctgcaactatttagctttagttggtggtggaaaaaagccgaaataccctcccaacaaaggtactgtaattgtgtattgaagaatcatgcctcacg<br>tg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1018	713	NA	intron:WDR45L:NM:019613:2/10
0	chr17	65671535	65671852	1000100	0	+	Ya5ac2571; RIP_Alu_chr17_065_01	CCACAAATTCTTAAAGCCCA	GCCACAAGCTACGAGGAAAA	SINE	Alu	Ya5	acagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcagagtgttccatggaagtcag<br>tgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaatgactataaatcatgctgctataa<br>agacacatgcacacgtatgtttattgcggcattattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactagattaagaaaatg<br>tggcacatatacaccatggaaaacccacaaattcttaaagcccacatctgaaaatctagacattcaagtatgtacattttctttc<font color="green"><u>AAGAGTATCATTACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTATCATTACA</u></font>gtgttgttgacgttactgaaaatatgttttgcattttcctcgtagcttgtggcatattccataaata<br>tctacaatagtgattagttttggctgtctgaagtttgtgttgtttgttttaattttttgttttgtttttataagttctggaaaaagtcaagttgcatgac<br>tctcatgatcttccaaagatgtattactaaagcaaagagacattcttacaggtgttttaaacatgagattcagtttgctaatggtggcacctctcactgg<br>aaagcatttcttactgtgctgtagagggtgactatggatgctggtggcagtctcactttccctagtggctactgaacgtgtttgtgtctcctttagaacc<br>aatagtttctaatgaata	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	462	136	NA	intergenic
0	chr17	71558420	71558421	1000101	0	-	Ya5ac2577; RIP_Alu_chr17_071_01	GCTTTTTCAGCATGTTTGCTT	AACCACACACTCACTCACGC	SINE	Alu	Ya5	acgtctgtggcgaaaagaacttagtgtgatatttaggagaactgtctttttggtgggtattgattagtcttttttattatttccttgtacctaaaagaaa<br>caatctttgagttgggtcacatttgtaaaaggtaattgtgttggcatacagtagagcttgacaagtttgttctggaaggaaaagataaggaaagttctgg<br>tgtgctgtgcttcagtgtagagtgtcccaagtccagtctgtaaggcccctcaaggggtgccaggtcctgagcagagggtgaagcgctgcagggaagtagc<br>aggaagctgtgctgggaagagacgtaaagcctttgctaagtctcagatcagttatgcagacagctttttcagcatgtttgctttt<font color="green"><u>AAAAATAGAACTCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAATAGAACTCCC</u></font>ctttccatatgaataatgaatgactaaggctatgagaaaccattatatggtagagaacagtaacaattaaaatgatatctggt<br>gtggcgtgcgtgagtgagtgtgtggttgggggactccatgtgcgattttgctcccctcccattaggtgactatggtttgctcaaaggaaagtctcttact<br>ttgatctgcccttgtttaggctgaaagcgaagaaactaaggagcgcctgtttgaatcaatgctcagcgagtgtcgggacgccatccaggtggttcgggag<br>gagctcaagccagatcaggtaggaccctcagccgagccctggttcttgctctgggcgggtccaggtcagcctgtgtccccttctcaggtggaccccagtg<br>ct	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	465	148	NA	intron:SRP68:NM:014230:8/16
0	chr18	68047755	68048055	1000102	0	-	Ya5ac2584; RIP_Alu_chr18_068_01	TTCCAGAGATGACATGGACA	AAAAAGAAGCCTGGAGAGGG	SINE	Alu	Ya5	gaagtaataaaagtattcatttgaaaactgcctttatgagtaaatgttacatttaatgattgtatttaaatgagtgtgttgaagtaaaacagttcttgtg<br>acgaatacattcagggtgttaagacaaaataaggttccattatttagggtctaagtgagaaggaatagagtccctaagaaaagtctccatggagtttctt<br>catgaagtcctttgggcaatgacatcttagtaacctggttacaggaatgcttaaagcaatccctaatgctataataatgacagtgggttttctttccaga<br>gatgacatggacatcactcttagctttaggacacaatttatctttcccttccagtagtaggttgttaccagatttgaaataaaat<font color="green"><u>AAAGAGTCAATTAGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAGAGTCAATTAGT</u></font>acagttagtcctggattttctcaataactatacatacttggaaaatttattcaccctctccaggcttctttttttctccttgcc<br>tgtgtaaaatggaataatctctaaaaagatttgtaggtctaagattctaagttacaaaaatgttcacgatgctattctaaatcacaagtgcaacatcagt<br>acaggtccttcgagaagcatacaccaagatggaattaaacttgcaagaaatatattggggtattgccctaggaaatgaaacaaggagggaagtagagtag<br>gctacattagctgtcagaccacgatgctggtcagacttctatgcaggaaagtgggattgtaggttgtaggatagttctaataaaatattggcaaggctat<br>g	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	496	180	NA	intergenic
0	chr18	11961930	11962237	1000103	0	+	15175; Ya5ac2613; RIP_Alu_chr18_011_01	TGGGGTTGGCATTTTTCTTA	CTCTGCTGCAGCGTGTCTA	SINE	Alu	Ya5	ggacaaagaatccagttttaaaatacgagcgggcagagccggggactgtggtgcattcctgtgatcccaaatactgtggaggctgaggtaagaggatcct<br>ttgagcctagcagttcaagaccagcctgggaaacatatggcgactctgtctccaaaaacccaaaatcaaccaaaacaaaacaaacaaaacaaaacaggca<br>ggcaggagaatttgtcagtatatttccacctccatttatattcaatcccaggaaccttcctcatgcaggcagtgagatttgaggcgtaaattaccctgaa<br>agtgggagtggggttggcatttttcttaagaactgggaacaaagcatttctccttgggttaatgctgacaaacgaaataatgcaatt<font color="green"><u>GAAAAAGAAATAA<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>GAAAAAGAAATAA</u></font>tacggatacggcagggggtatatgtactttccccttaattttgccgcgaacttaaaagtatagaaaaaaaatagacacg<br>ctgcagcacagcctgtgtctctcctccgccccgtagacggaagtgcagaggggctggagggacgaggctagagcgcggcaaagcaggcgggagaactaga<br>tcccagtccaggtgaacatccaggcccacgcgcactcccctcctgcagaggcaaaggtgagggtgagggttgtgccagaaggtgacttttcctggaaacg<br>tttagggcccgggccgcattcctgcgggtcttgggtacaggcaagctcctggtttccttcctcaggacacctgcatcgggggagtggcgcggcagccgaa<br>gagagaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	496	182	NA	intergenic
0	chr19	56149289	56149596	1000104	0	+	Ya5NBC150; RIP_Alu_chr19_056_01	AAATGGAGACACAGAGGTGTAAAGA	CCCAAACTGCATATTTAAAGGGTAG	SINE	Alu	Ya5	ctgcttgttcgtttgtttatttatttatttgagacagagtcttgctctgtcgcccaggctggagggcggtgatgtgatctcggcccactgcaacctccgc<br>ctccagggttcaagtgactctcgtgcctcagcctccagcatagctgggattacaggtgtgccccacgacacccggctgattttttttttttttttttttt<br>ttttagtaaagacagagtttcaccatgttggccaggctggtctcaaactcctggcctcaagtgattcacccacctctgcctcccaaagtgctggaattac<br>aggcatgagccacggtgcctggcccaaactgcatatttaaagggtagagtctgatggctttaggtacttgtcacatcagcatagtc<font color="green"><u>AAGAAGATGATCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGAAGATGATCAT</u></font>agacaccaccctgaaaactgtgcttctgcccctttgcgtgtatctgggactctgttaatctctctttctttacacctc<br>tgtgtctccatttgtgtctttctctatcttctcttttctctctgactctgtgtgtccctgtgtcccaggctctctgtgtgttctctctgtgtttctgtag<br>ttgtgttattctgtctctctctctctctctctttcttccccaccccttcctccttccctgtctttctgcctccctctccctgcattttaggcaggggaga<br>ctcaagccactttgcagagggagctctcaactccttctcttgccttcactctgggcccaggccgtggagcacaaagaggcagggacccagtctgggaatc<br>tgcaggtg	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	491	169	NA	intergenic
0	chr19	20037730	20038026	1000105	0	-	Ya5_416; RIP_Alu_chr19_020_01	TGCATTCATCCAGCACTGTT	GCATAAGGCCCAGTCAAGAG	SINE	Alu	Ya5	caagctttatcctacataaatggaaatgcagatataataagcaaatgagataagcaaatcaatgaaataagcagattgatacaataagcaaattgcaatg<br>gaaagaggagaagggaaaagagatatatatattatgctcgccagactatggaggattcaccaccagagtgggaagcaacagtctgggctccagaatcaga<br>cactcatctatgcacagatgaggagaggtctcatgaagcttgggcacactctgggaccctagctctttggtaatgagttgtttggcataaggcccagtca<br>agagagtcgttcatgattgggctcaagcaacacaaaaaagtcaacttgcttttgcaattctctattgtttttcaacaactaatatat<font color="green"><u>AGGAATAGATTGA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGAGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGG<br>AATAGATTGA</u></font>aatagagatatctccaaaacagtgctggatgaatgcatcaaggggctcacacaacctgttccaggacttggtgaccattggttgtgtcca<br>ttttcaattgagttcaaatttaatatttaacttttcctccacaaattttcctgtcttgatgaattggctctgtctaggcaaagggcaaggtgaacccctt<br>gggcagttacactactctgccttctgggttcaagtgattctcctgcctcagcctccatagtagctgggactacaggtatgcaccaccacacccagctaat<br>ttttttgtatttttagtagaaatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatctgcccacctcggcctcctaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	463	153	NA	intergenic
0	chr19	58512615	58512916	1000106	0	-	pAlu19-58496721; Ya5ac2662; RIP_Alu_chr19_058_01	CCAAGGGCCAAGTCTATCAA	CACTTGAATTTCATACCAGCCA	SINE	Alu	Ya5	aaactgtacagaccaagaggaagtggggcaacattttcaaagtgctgaaagaaaaaaaaaagctgccatccaaaaatattatacagcaaagctacccttc<br>aaataggaagaggaaactgtctttcccggacaaacaaaagttgacagcattcatcaccatcagatccagcggacaagaaatgctacaaggagttattcaa<br>catgaactaaacaccaattggcacacacacaaaaattgaaggcacaacacccactggtaaaatgaagtataaaaggaagcccagaatactctaatactgt<br>aattgtgccttgcagtccactcataactctagcatgaaacccaagggccaagtctatcaaaaacagtaatacctacagcaagctgtt<font color="green"><u>AAGAGTGAGGCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAGTGAGGCAA</u></font>tacagaaatatatagatggagagcacataagtcaaaagtggctggtatgaaattcaagtgtaaagatgtttttcagtttttcttt<br>gtttctattcttttttgtgatctaagataagttgtcatctatttaaaataaatgcttgtatttataagatatttcattgttaattcttttgtttgtttag<br>ttctctgttatttcaagtaaattttaataaaatgagtggttgtgcttgcttgctcgccttagggatatgagaacacccaccccaaaatctctttctttct<br>aacatgatcaattggcatcgtcacatgataaagaaaaaaaaattaccctctactgatttagatcctgaacatctgctttttttttcttttttttgtgaga<br>ca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	435	120	NA	intergenic
0	chr19	23112644	23112945	1000107	0	+	pAlu19-23096752; Ya5ac2670; RIP_Alu_chr19_023_01	TGGGCAGAGTGAATATCCTTTAG	GACCTTGGTCCTTATTGTCTTCC	SINE	Alu	Ya5	gtgctatgtttaagtagaagcattgagaatgggcacaatatagttttgctttgttctctgtgaattttaagaagcaaacacctcttcaggtttttataaa<br>ctggcttcaagatgtaaagatattcttttgttgggtgcccagggtgatagaatgccctctgggcttatagtggagaggggttgtagcttggtaacaaggc<br>tgctgggtcttcactggggtccaactttagttgacttgttacaaggggcttgggtagttataattcccattatatttttgggcagagtgaatatccttta<br>ggactttgctctgtagggtagacactagggcaggtttctgcaattggttgtgcatatatggtgggctttatatcaaaatgtagat<font color="green"><u>GAAAATGGCTTTCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>GAAAATGGCTTTCAC</u></font>tgggtaccagaaaggatttccccaggtctctgtgtgggtttccatgtaggtagagctgaccatgaactgtggctcaaagagct<br>ggaactgagtcatgcaagtgcttcggggaagacaataaggaccaaggtctgcagtcttgtctgtgtggctataaatgagtgtctttctccaggcctctga<br>aaaggcaggacctcttccagactttggctgggaagagttttggatggtttcagagtaagttcaaaattctcagtgggaccaagttgggtggataattttc<br>tggtctgtagccaagaacaggggtcctgttgtttgccacctgaatgaaagcctgccttctaaaaaggatgctcctcaatcttgggcattagcagagtttc<br>ac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	476	159	NA	intergenic
0	chr20	35249038	35249335	1000108	0	+	pAlu20-36453952; Ya5NBC148; RIP_Alu_chr20_035_01	ACAAGATGACAGATGTAAACCCAAC	AAGGTGTTGTCAGACTAATCTATCG	SINE	Alu	Ya5	agtcaggtcatttgtcctggaatattttccacattctgcctttgattaattgtatcttcatgatgtttttgaacatatttccctatcctttgtatccctg<br>taaactgatagttagctcttgaggctaaattatattcagggttggttttcttggtgaaaatatttcacaggtggtgctgtggacttcctattaatagata<br>cataatatctggttatttcacttttagtgatgatgaagttgtaaattaaggtgttgtcagactaatctatcgcttataaatagtatatagtagggatttg<br>ttttttcatccagtctgataatttctaccttttgattggggagtttattccatttatttttttattttgattctttttttatgttt<font color="green"><u>AAGATCAATCATTT<br></u></font><font color="red">GGCGGGGCGCGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACACCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>GATCAATCATTT</u></font>atgtttaattatattgttgggtttacatctgtcatcttgttatttgtttcctattggcttacctgtttttccctctcttttcctgtct<br>tatttttatattttattttgttttattttatttttttgagacagggtctcactcttgtcacccaggctggagtgcagtggtgtgatctctgctcactgtg<br>acctctgcctcccgggttcaagtgatcctcccatctcagcctcctaagtagctgggattacagacgcgcaccaccatgcctggctaattttttgtatttt<br>ttggtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatttgccctcctcggcctcccaaaatgctgggattac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	60	505	193	NA	intron:RPN2:NM:002951:2/17
0	chr20	36572685	36572983	1000109	0	+	Ya5NBC45; 3071; Ya5_5642; RIP_Alu_chr20_036_01	TAGGGTAAGGAATATGTGCTGCTTTAG	GTCTCTGAACGACTATGTGAGCAG	SINE	Alu	Ya5	aactcctggacttaagcaatccacccacttcagcctcccaaagtgctagggttacaagcatcgagccaccgcacccagcctggaatttgtctttagttca<br>catattactgcattaaattcatttgtttttatatcagattcacactcttattttaactttataatatttactgatatttagtaggtctaatgtctttttc<br>tctttttccttctcttagaatatttatctcttcttgcctgtttaacatttcagatcaattttagaaccaatttttcaagttacaaaacataagcaaacag<br>aaggaaaaacctcaacgaaaccttctggggtttggattgtgtattatttagggtaaggaatatgtgctgctttagcaaatgaactt<font color="green"><u>GAAAATCTTTTATA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGGG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>G<br>AAAATCTTTTATA</u></font>aagtctggagtcaggactggctctgctcacatagtcgttcagagacccagctggcagaggctctttcatcttcaacagatgactcca<br>ttagggcctcagtgttataagcaggattctcgtatctggctagcagatggggaacagagagcaaggaaaattttgtgggagggttttatgtgtcaggcct<br>tgaagtaatataaatcactgttactcatattccattagccacaactcagacacacaccacacttaattgcaagagaacagagaagaaaagagaaagtggt<br>gaacagctagccagactctgccgaagatgagaattgtattaagcttgtatttatatttaggaaacgctgatatctgatattgagtctgcctttcttttt	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	591	265	NA	intron:KIAA1219:NM:020336:6/30
0	chr20	14477082	14477382	1000110	0	+	Ya5_5672; pAlu20-14476982; 2845; RIP_Alu_chr20_014_01	TTCAATCATTTTCACCTTTTGC	GTGAATTGCCAGCATTCTAATC	SINE	Alu	Ya5	aattaaagtgatggtaaaatagactacacctcttgataagaggagaggcaaagccacgtcgcaaaggggcttgtgtaaaaaattggaggaattattgggg<br>ccatatttggagacttggccccttcacattttgtatctgactttctcataagacttttatttcttcagagcaagggctatgccttcttcacgttttcaga<br>atcagagtatgaaaaatatttgctgtttcttgagtaaatgattactccatgatagttttccctctaccccaactgccaattataaactcagatttacatt<br>cagaatactggtgtgaagcatttctactatatctttttttttcaatcattttcaccttttgcatttatcttataaatctaacactata<font color="green"><u>AAATACATTATC<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTTGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAATACATTATC</u></font>ttagttttttttttttagattagaatgctggcaattcactgggaagtgatccctggaagtattaaatgaacagaggagtgggagaag<br>taaaaaagggaatggatgaggctaaaaaaagggtgacaagcaaattaacctggagcaactggggttgtttctactggggaactctgcacgtgcctcggag<br>ctatcccacctgaagggtgagagcactggaggacatgaatttcccagaagttatggtgctccatgattacaggcaaagcaagcccactctagtggccaga<br>gagagccctcaggcaaagagacacatgttctagaagtcataccaacagcactgaatggtccaagtcatggagatctgggcagtgcaccagcaatgactgc<br>c	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	412	100	NA	intron:MACROD2:NM:080676:4/17
0	chr20	32579493	32579805	1000111	0	+	Ya5ac2704; pAlu20-33784411; RIP_Alu_chr20_032_01	GGTTCCTGTCCTCCACTTCA	TCCTCTCCTCCCAAGTCTCA	SINE	Alu	Ya5	aaaagtctaatttattagagccaaagcaagacctgaggaatctgtgtgtttacgaagcaccccaggagattcttatgatcagacaggtttagaaaattct<br>gctttaggggatagattctaatcagaagaggctgcagtgagagccacaggcctaagattcacagcagttctgtctccttccgaaggccttcccttggaga<br>gactgcctcagatcatgttttcagggctgtggtccttaaacccaggggtcctgtgctaccctgggagtagaggtagaggctggggttcctgtcctccact<br>tcagtcagagcacacacactaagaaccatcagttcatgtttctacattggttttaatttggaaaggggtttggccaattt<font color="green"><u>AAAAACTACCCTACTGGAGT<br></u></font><font color="red">AGCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAACTACCCTACTGGAGT</u></font>ttacaaaaataacataaaccagtttatgtgagacttgggaggagaggagtccactgagacactgctg<br>ctgatagagcagcgtgaccagtgaaggaagaccaggaccatgcctgactcacctctgttcccgtgtcattcaccacaggccgcagagtcaggtcagtgaa<br>cgttaaatgaaccaaccacagtgggtgttgccatcagcccctttgatttggtaattcttgaggactgtgttgagaggaaataatcccaaaggaaaaaacc<br>tgaaatttttgcaagcatgttagatgccataatcagtagattaataattgttataatggctgggcgtggtgcatggttgctcacacctgttctcagcact<br>ttgggaggccatg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	498	165	NA	intron:DYNLRB1:NM:014183:2/4
0	chr20	7222351	7222649	1000112	0	-	2716; Ya5ac2706; RIP_Alu_chr20_007_01	TCAACTTGGCTTATGTCTGAAAA	TACCAAAAGCATTGGCATCA	SINE	Alu	Ya5	aaacatcagaagattgctcttagggaacttcctgggatgatggtaattttctctaccttgatagaggtttgggttacacaggtctatgtatttaaaatat<br>gcttactattccattccacttcaaaagacatattgaaatgtagttgataatatgcttgctaaagtgtttaggggaaagcatcctgacatctgcaatttac<br>tttaaaatgtacaaaaaactaagatgaagtatagaaaaatggagggatcgataaatggataggtttgtgaaaaagcaatatagaaaaatgttcatgttag<br>agtctaggtagttgatatgcaagtgtttactgtaaaatttattcaacttggcttatgtctgaaaatagttgtataaaatgttggtg<font color="green"><u>AAAAATGTATTGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAATGTATTGTC</u></font>attcctttttttaaaaaaaaataaagatccatttgtattaataatcattctctttttatgatgccaatgcttttggtaaagttaggg<br>gcatcaaaatcattaatagatgtcttagtctgttcaatcttctgtagcagaatactatagtctaggtggcttaaataatagaaatttatttctcacagat<br>ctggaagctgaaaaatccaagatcaaggtgctgtcacatacggtgactggtgagggctgcttgctgatttatagatggcactttcttgctataaactcac<br>ttggagggaagaatgaggcaattctctagagcctcctttataagtgcactaatctgattcatgagagctgagccttcatgacctaatcaccttccaaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	449	136	NA	intergenic
0	chr20	59959698	59959988	1000113	0	+	Ya5ac2709; RIP_Alu_chr20_059_01	CTTTTCCTGGGGCACAATTC	AGGCCTACAGCAGTTGCCTA	SINE	Alu	Ya5	cccaccctctccccttccccagccctgcaaccgcccctccacagccctgggccctccctcccacactctccccttccacagccctgggcccctccttccc<br>accctccctcccaccagccctgggcctccccctaccgtcctctcccctcccctagccctgggcacctccctcccaccctctccccttccccagccctggc<br>ccctctgtcccattctctcacctcccttagccctgggactccctcccagccctgggcccctcttcccaccctctcccctcccccagccctgggccccctc<br>ccaccctctcccctcccccagccctgggcacccccccaccttccttttcctggggcacaattcacatgtacactgacttgcataac<font color="green"><u>AAAAAACCACTCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAAAAACCA<br>CTCAC</u></font>acggttaatcatgggtgcagttgataattacaggcacaattaaccacttgctaattttgagggtgcgagcagttaattacattcacaattaggca<br>actgctgtaggcctgggaccggagtcctggtggggggacactccttgtaatcagactcccagggtgaggccctgtggtgggggtgagggtcaggtgatct<br>gcgaagcacccccctcccagcttcaagtggggagcttacaggcctagaggtcagggcctggcaaacgacctgaaaaatccagcttgaggccctttccagg<br>gagccccagaggccttctcttgggtcatttcccaggatgggggtcgctgtcactcctctgtcccaggaggattcagagaggtcagttcaca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	471	166	NA	intergenic
0	chr20	19009431	19009729	1000114	0	-	Ya5ac2715; RIP_Alu_chr20_019_01	TGCTGTCTGAGTGAGATGGG	ATGAACCTTCGAAATGCCTG	SINE	Alu	Ya5	caccaaaagttccagatgagagagaaaggcagcccagacccaggagtaagagggggtcttgagaaatgattggattatggatttattttgtgggatagaa<br>aaatgataaaggagtcaaaatttgactccaaggtttggtgtatttgctaatgaaaagatgacattgccatttactgagccagggattcctgcagaaagag<br>agttttgggggtaggggagatcacaagtttggtttcagacattgttattgactaaatatttacattcccttcaaaatttatatgttgaaacataatcccc<br>catgtgatagtatttggaggtgaggcctttcagaggtgattgggctatgaggtcggagctctcatgaatgagatcagtgccctcat<font color="green"><u>AAAAGAGGCCCTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAGAGGCCCTGG</u></font>agagctccctcagccatgtaaagatacggcaagaaggcaccagctatgaacaaggaaggggcccctcaccagacaccaaatttacca<br>gcaccttgatcttcaacttcccagcctccagaactgtgagaaataaatttctgttgcttataagccacccaggctatggtatttttttacagaagcctga<br>acataatgagacaaagatgtctctgctttgagatgattatttaacatccaagttgggatgtctagcaggtatttggatattaagcggcatttagtgagag<br>gtccaggcatttcgaaggttcattttatgtgcaggaggcacatgtgagcagataaacaacacagagcttctctttgttgcaacactgggttcaaaccag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1180	867	NA	intergenic
0	chr21	23664118	23664417	1000115	0	+	Ya5NBC351; RIP_Alu_chr21_023_01	TTCCTCCCCTTTTTCCTGTT	TGTCAGTATGTAAACCCATGCT	SINE	Alu	Ya5	aatttcagatgttcaaacatgtattttttctttaatcaaggctatctagctgcatctactctattcaatatatatttgcacattcttaagatatcttcaa<br>ttaagcttataaaaatatgaatttacatatgcagcatgatttacttttcaggattgatcttttaaaatttgtacaaatttaatatcttataaatattgca<br>attttttcgaacactgccaaaatataattgatatcatgaaatattcatttaaattactcaaatatgtcaacaggcaaaaatacatttagtaaccactaca<br>tgtatagagaataaaaattccagtttggatgtgatgttatatgtcagtatgtaaacccatgctttaaatagaccattttgttcttt<font color="green"><u>AAAAAAATTATCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAAAATTATCTG</u></font>tagttttctctgtggaaccgataatattagagataatttctcataacaggaaaaaggggaggaagtaaaaaggaagaaaagaagga<br>cggaagaaattaaggaaaacaaaagggaaaaaagagataacaaaagaaagaaaaaacacaagtatcctacacaagtatacagctcattgtactctagtga<br>gatgaatgaattatagatacaataacataataataatttttggtgtttatttgaaaagcaaatgctgcctttctctatatcagcttatgttggatatctt<br>attatcctaatcaaaagtcagtataacagaagagtagaaaggactactgaaatgtgactgagataaaaattatttaaatgtaaataaataataattaggg<br>	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	437	123	NA	intergenic
0	chr21	16444095	16444411	1000116	0	-	Ya5ac2731; RIP_Alu_chr21_016_01	ACCTCACTCAGAACTCAACGAAG	ATGATACCCTTTTCTCAGCACAC	SINE	Alu	Ya5	gggatagcattgggagatatacctaatgctaaatgactagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaactaacctgcacattg<br>tgcacatgtaccctaaaacttaaagtataaaaaaaaaaaaagattcccagcaaattttgtgaagtctggttttaaatccaggtttatttaactggcccgc<br>taagtgccagatactctgctaggcacaaccacatgctaacttacttactgaagaatgaaaacaaattctgtcttctcagatttcacacctcactcagaac<br>tcaacgaagaccacaacaaagcgctcgagagaagcgatttaccagggtgtctgggggtgctgttatcatcgctgccacactaacaaat<font color="green"><u>AAGAAGCATTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGCATTTC</u></font>caggggaagacagatccaacacgagacaggtgtgctgagaaaagggtatcatagtcttgattttgtccttt<br>cgcaaagggtaaatgtaaacaggaaataccagaacacctaaatgtaaacaagtacttgaggaattctaaagttgttctaagaactatggaaaaatatttt<br>taaaaacattcatattattaaaaatatggaatattgttatggttgttatagccagaatgtatcatggctccacttttataaatactattaaaaagtggta<br>tttatatcatactccttataaaatttcaaacgtcacatttactgcagtgttttgtcattctttgtagcacaatttaaaatgcactccaaaatggacatgt<br>gatttttctcttccaag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	429	103	NA	intron:C21orf34:NM:001005732:2/8
0	chr22	16479533	16479826	1000117	0	+	Ya5NBC109; 52565; RIP_Alu_chr22_016_01	GTGCCTGGTACTCTAGAAATAAAACTCTCT	AGAATGAAACTCCGGCTCAAA	SINE	Alu	Ya5	aaatatttgagacagaaatgcatttactgaggccaggcgtggtggctcacgccagtaatcctagcactttgggaggccaaggcaggtggactgcctgagt<br>tcaggagttcaagaccagcctgggcaacacagtaaaaccccatctctactaaaatacaaaaaattagctgggcgtgatggcatgcgcctgtagtcccagc<br>tacttgggaggctgaggcaggagaatcgcttgaactcgggaggcggaggttgtggtgagctgagatcgcgccactgcactccagtctgggcaacaagaat<br>gaaactccggctcaaaaaaaaaaaaaaaaaagaaatgcatttcctgaaataatagctgaaataggacttctgtatttgatccag<font color="green"><u>AAAGAGTCATACAAGA<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAGAG<br>TCATACAAGA</u></font>aactatcaccatcaaaacaatattaagcaatatcctatcagctgttatgtattagtgagagggaaaatagtcttttcttcttcaaatgat<br>aaactagtcaaatagcccaaggtttcagagagttttatttctagagtaccaggcacataaaaatttaaggctgtactaaaaggacaatgaaaatattaaa<br>caatatatcttggtcatattttatttactgatttttttcttgagacagagtcttactctgtcacccaggctagatggagtgcagtggtgcgatctcagct<br>cactgcaacctccacctcccgggttcaagtgattctcctgcctcagcctcctgagtagctgagactgcaggcgtgcaccaccacacccaaccaa	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	58	561	251	NA	intron:ATP6V1E1:NM:001696:2/9
0	chr22	16264244	16264561	1000118	0	-	Ya5NBC221; RIP_Alu_chr22_016_02	CAGTTTTCCATATACATGTGGGTTC	TAGTGTTAAGAGGCCCATTTTCTAC	SINE	Alu	Ya5	atctgacaaaagatgggagatacctaaagagttgagaatttgaatataaaacttttctgtcagaaatcaaagaaaacctagagagagagaggtaccatca<br>tcatgggtcagaagactcaatagtgttaagaggcccattttctacaaattgacctagatattcaatacaactccaatctaaatgctagcaggcttttttt<br>gtagaaactgataagctaattctaaaattcatatggaaatataaaaaatataaaatagccaaagcaactttgaaaatgaacaaagtgagaggactaacat<br>tatttgatttcactacttattaaaagctgcactaattaagatactgtgatattgtcttgaaaacagaacagagtgaacaatgacata<font color="green"><u>GAACAGGGTCCAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAACAGGGTCCAG</u></font>aaatgaacccacatgtatatggaaaactgacttgggcaactaataaaggatagtctttttttttttttt<br>tttggcgggggggtcggggggatggggacagagtctcgcactgtcatccaggccggagtgcagtggcacgatctcggctcactgcaacctccacctcatg<br>ggttcaagagattcttctgcctcggcctcccaagtagctgggagtacagacgtgcaacatgacgcccggctaatttttgttatttttagcagagacgggg<br>tttccccacattggctggactagtctcaaactcctgacctcgtgatcctcctgactcaagtgctaggattgcaggtgtgagccactgtgcccggccaggg<br>tggtcttatctacaaatg	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	640	313	NA	intergenic
0	chr12	89370520	89370710	1000119	0	+	Ya5ac2215; 12732; RIP_Alu_chr12_089_01	TCACATTCTGCCAGTGTTCC	CAACAATTCCTTGGTCCCTT	SINE	Alu	Ya5	atgcatggcacttcatcttttaaagggcactttaataatttttctaaatcaatgcatgtaagagttaggtgttctcttcaagttcatcttaattttattg<br>aagaagaaacaggctcagatatgacagatgaattggcctggcttttcaaattttaagtaagttgacttttgattacagattcagaactcattcaattgga<br>caacatctgactcctagagacagacttcagaaactctgtagaaacccaaaccaaaactagcaagtgaaaatgtagcttctcttctttatgccttccatat<br>tctcacattctgccagtgttccactttttatattatacttatttgtttttgattcctggtttgcttcaattttaagataaagataat<font color="green"><u>AGTAATAAAAAAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAGAAT</font><font color="green"><u>AGTAATAAA<br>AAAT</u></font>gtactatgagtatgaatcattaaatacaggattgaaaagccttatgtaaatatagttgctcttcaaataatctttaaatatttgtgaccatctact<br>gtcataaagggaccaaggaattgttgtaatataactgatttactgtgatttaagtgtgtaattgagtaacaaatgttctaaaatatgactgacagatttt<br>ttcagaataaactctgtgttgttcattttgttatagtcaattaaatttaaatgtattaaaagcggtttacctgatattaaactctaaactctatgttctg<br>gaaaatagacttcaaaaaacttcatatggtggtcaattacagatgttacaaataaactagactaatgggatacatttaaatgcaaaataca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	424	124	NA	intergenic
0	chr13	71854726	71855025	1000120	0	+	Ya5_552; RIP_Alu_chr13_071_01	TCAAAGTTCATTGGAACCAAAA	GCAGGCAACTTCAACAGCTT	SINE	Alu	Ya5	tgctgtgatttcaatctttgagaaaaactaaggctttcatgagctaatcatcttctgtatctttatattctggctaattagtaattataaattgcctatt<br>ttaaaacaggatctaggacacaatgaaaatttttaaaaagttaaatcaatctgggctgaatgcccagaaaaattaaaaatttagtttaacactcctggga<br>tctctatgtgtatgtgtatacgtctatgattgggtttattagacaaaactaattgaaaagaagatatctggaaattaaacctcaaataatattagtcaga<br>gataaggaagcatatttttaatcaaagttcattggaccaaaaaaagtctataaagtaacttaatccaaggttttttttttttttttaaaa<font color="green"><u>AAAAGGGTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAGGGTTT</u></font>aaaaaaaaaaacttaagctgttgaagttgcctgcatttaaaattaatacctaggggtagaaaacctactccttaaacctgatactaagaa<br>atatgcttattaatggagtcaggggtagaaaaaggtttaaggaggagaaaataaaagtgaaaataaagagacaagcaaggggtatagcagatggagatag<br>acattcaaagctggagagagaaagagtaggaaagattaaagcatttagaacatattccaaggaatattcttaggctatgggcatcacagtgggctgtctc<br>cctgccctttgggtaattgactagccactattctcagctgcttaagtgtataagcttcttaagaggccatttttgttttattcatagtgcctactatagt<br>	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	423	131	NA	intergenic
0	chr13	68864669	68864962	1000121	0	-	Ya5ac2312; RIP_Alu_chr13_068_01	GGCTGGATAGATAACAGGCAA	GGCTTACCACACAAGCCATT	SINE	Alu	Ya5	aattacagttaaactttcttttgagatggagtctcgctctgtcgcctaggatagagtgcagtggtgcagtctcgcctcactgccagctctgcctcccggg<br>tccacgccattctcctgcctcagcctcccgagtagctgggaccacaggtgcccgccaccacgcccggctaatttttcgtgtttttagtagagatgggttt<br>caccatgcaggatggtctcgatctcctgacctcatgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagccaaa<br>attacagttaaacttctataatggctggatagataacaggcaatttacgttagatggtcagtgaaactctacgaaggaaagtcatatttgaaatt<font color="green"><u>AAGTT<br></u></font><font color="red">CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAA<br>ATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTG<br>CAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTT</u></font>t<br>caagaatacaaaaaaagagcaattcataagaagattccagagaagaaatttctagcagtcaacagtgcaaaggcactgagtctagaaatggcttgtgtgg<br>taagccattacaatgggggtactaaagtggagaggggtgttttcaggtgagaacacttaagtaagcagtaactgaaagctgtatatcttctgcaccatta<br>ttttcagaagtctgtatttggtcaaaaatagttaacattttctgtattgcataaaacctaaccctatattttgatgaatttaaaaaatgtttctgcatat<br>ttaagactaaattttatttacttcatcaaaaattagtcatttgtatatcatatgcttatggaatgataaccaagtaaatgaatataactgctcc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	484	189	NA	intergenic
0	chr13	87801285	87801607	1000122	0	-	Ya5ac2336; pAlu13-87839827; 238759; RIP_Alu_chr13_087_01	GTATCACATGAGGTGCCTTGATT	GTCCTTTCCCTAATTCTAATGTCTG	SINE	Alu	Ya5	gttattgctttcctgaagcttttccaaaatccatcatttccagacaaaactagttattagcaaaacctgaggtgttaaacatgatattcacaactttaaa<br>ttaatatagaataaaatactatggatatagttcataagctaagaaattattatatgaaaatatttctgtatgtgtaaagttgaagtgtgtatcacatgag<br>gtgccttgattaatatgttggtaagatttttaagaaatttgtattgctttttatttaaaataaaattattactgtatttaaaataaaataaaatttcttc<br>agcattagtagccattagacatcttttagctcaagagtcagactctcattcattcagtacagagtagaattggtaaatgatactctc<font color="green"><u>AGAAAAATACTAG<br></u></font><font color="red">ATTTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAA<br>AACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAATACTAG</u></font>atttagatatcagacattagaattagggaaaggactgttacagtactatggtgaaaaaatgtaa<br>cagaggagaaaaaatgaaaatcatttctccctttagaatataaaattttaggatgtaatcccttttttagataagaaaaacacaacttagtcatatgttt<br>tcctatgggaagagacaagctctcacaaagacatagaaaattttctccgccgaaatgaaaaaaaaaggaatatcttgccaattttttctttttctttttt<br>cttcttgattaagcctttttatatcacaggggagagaaaattgattagaagtatttaaatgtttcatttggatgacattattttttagtttcctacttga<br>tacaagatttattcaaagattga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	585	250	NA	intergenic
0	chr22	14733465	14733466	1000123	0	-	Ya5533; RIP_Alu_chr22_014_01	TGTCATTTTGCCGAGAGATG	TTCCTTCCTACCAATAACCAGA	SINE	Alu	Ya5	atttttctgaagtcatacccccccacacacacaccttcagtgatgtaagattacttatggtgcaaataatttggcagataacccaggtgacatgacgact<br>ttataaaagagatactgctatcatagatgtaaaagccagaaggaacaagcaacgtggatactgatcctccatcatggcctttagttatgctatcagattg<br>gaaacagaatcaaattcttagctcaagtacagcagagttttagaaaaagggaggcttgccacaggcacaaagcttagggaaatttgaggagagacacaga<br>gaaaaacaaacatgtaaactgctctctttttatgtcttccttcctaccaataaccagatatctactccatttctgtacttcattcaacaaatta<font color="green"><u>AGATTT<br></u></font><font color="red">ACCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAA<br>AAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGA<br>GCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGATTT</u></font>acaagaccgtacattgc<br>tcttttgagaactcacctaaatttcatctctcggcaaaatgacaggtcatctctccttgccatcgttacttcaaccaactgacacagtttcgtttttatt<br>tgcattgcatggaccatattcccaagcacacaaacgtacctatacagacatagagacaataaaaaaattatcagatacagacacaagataaggcattcaa<br>aatactttaaccatcaaataaaatgaactaaacgtaagtttgaaaacagtaagacatttatttataggagagcatacacaatttctggttaccttgttgt<br>cacagcctagtttgtgtgcagtaaagaatggcaaattattttatcaattactatcaatatcaatgtgtgacaggttt	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	408	125	NA	intergenic
0	chr14	58964124	58964125	1000124	0	+	Ya5ac2408; RIP_Alu_chr14_058_02	TGCGCTTTAACACCAGTCAG	AATTATTTGGGGATGGGCTC	SINE	Alu	Ya5	tattgctgtacgtgtgacctcgggaaagttatttagccatgccaccctcaatccctgcatatgtaaaccagggcttataataataccttctgataggtgg<br>ttatgaagattaaatgagagatatgcaaaagcccaattccagtttttgatcattcttttcaaagtgtctcacataattctctggctactggtacatgtag<br>attattaaaaccagggcacaaattgatagtgcactgctttatcacaacactgctgttctgctaaaaccctcagccacatttatctcagaagggccaggac<br>cagatggacactatcattgacttgagtctataattatttggggatgggctcaagtcttgcatttttgttttttaagatactag<font color="green"><u>GGTCTTCCACTCTCTTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GGTCTTCCACTCTCTTT</u></font>aggaaaaagagcgaatgctttgccagccctattatcctctgactggtgttaaagcgcatttagtgggaatgtc<br>attaactttttcatgggaaagatgaaattggccagcaccctgtttctcccttccagttttgctgtgctcctggctgtgcctagagagggaaatccaatga<br>agcgtgaggtcaggcagcccaagctcttccccagggtgcactcagccagcaggcctcggtcctaccttgaggcaaacactccttctaaatgtttatttat<br>gcttttgaacccaaggtccaatgggaacatgaaacatatgattccaaaagagattaccccccacggatttcttctaccacacacagagaaaaggaaaacc<br>atgtataagc	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	352	127	NA	intergenic
0	chr14	86927818	86928136	1000125	0	+	Ya5ac2409; RIP_Alu_chr14_086_02	CTGGATCTTGGTTTCCCCTT	GGTTTAGGATTTGCATTGCTG	SINE	Alu	Ya5	aaggatttccgtttaacttcactttcctcagtccatttcatacatcttgaaacttattattcaactattatgttatttcccaatttgtctatttgctaca<br>tttcaatggccttgtctagatctcatagtccctttcactcattgcttccgttgttatatctacataggatattttgtatagattcataaaaatgttaaaa<br>tatatgtatactcactcaatacttactcaattagccctaattgccagacacttaatagaatttggtgggatcacttctggctttcataaaaacttgggca<br>cttttcaactactccctctggatcttggtttcccctttgtaaaagatgaaaaaaatgaaaaggaaaagatatcgcacaatagttatatttat<font color="green"><u>AAAATCGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAAAAA<br>AATAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATCGT</u></font>aaagctgattgtaaaagtgacagaagaaaatatcacagcattgattctacaaagactcctttgattaacagca<br>atgcaaatcctaaaccagtcttgtaaatgtactgaaaaaaagtcattaaatttcagtaatattcactctctccctggtcttaaacactgttagtagaatt<br>atagattggttaactcttttagaagctaatttggcagtatatatcaaaattacaactgtgttttgcttatgacctagtaattctactttacaggtaccca<br>aagatgtatatataaaagtgttctttgtatcatttattgaattagaaaaaggtaatggacaatacatattcactggtaaacaagtgaaaacattttattg<br>aatatgttggaggtatgaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	499	172	NA	intergenic
0	chr15	66976380	66976381	1000126	0	-	Ya5ac2465; RIP_Alu_chr15_066_01	TGATGGAGTTTAAAAAGTGTCAGC	AGCTGCCCTAAGTCACCAGA	SINE	Alu	Ya5	aaaacctcctgaacaacatgttctcattaactgttatcatcctcatgacagctttcttttactagagacttgtgctgtgcttactgaatcctcacctctc<br>ccctgtcaggcgggtattcttattgtacaggtaaatgaggaaagagccagactctgctccctagaaatagccacaaactcagccaatgtgtaaccagcac<br>cctgtcaggtcagagtgctttgtccacagaagtgctcagggccaagtggaagcagacagagcttctcagctgccctaagtcaccagatacttccattgct<br>tgcaactcctgatattttagacattatagaaatgataaaatagggttacaaaaatcattatgtatttgagatgcttacatttaata<font color="green"><u>AGCTGACACTTTTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AGCTGACACTTTTT</u></font>aaactccatcaaaatatataattcatcatcattatggaattcacaggatatttacaggatttataaaaaataaagt<br>gagatcagtgattcatcactacttttataaatcctgtaaatatcctgtgaataccataatgatggtattctacctaccagcagtgccttccactaatggg<br>atccaacgctgaagctgtaagttgcacatctctttcttctgtccttgttggtttatctctgtgatcacagatagaacctctttgggatggatgtaaggtc<br>caaattctaaatttaagggcctctgtgaatttgaagcccaggacacaataggccctgaatggaaggaaatattgaaggccacccttttaagcccatcagt<br>aagctcataa	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	463	145	NA	intergenic
0	chr16	32960442	32960738	1000127	0	+	Ya5ac2487; RIP_Alu_chr16_032_01	TTTCAAATGCCTAGTGCAATTACT	TGCACACACGCTCACTGATA	SINE	Alu	Ya5	atactgcaggcaataagaacacagtggtaagagtttatgtatgtaaacatacttaaacatagaaaagtatgtaaaaatatgtattctcatgggaccaatt<br>ttgtatatgtaatccatctctgacagaaatattatgcatgacttgactctatgaaaaaataatacatttttaaaaatggacacatgtatcaaacatatta<br>ttataaaaataaaaatatttattcagtgtaagaatttgtaatgatcacagcttatatttaagtacagtttcaaatgcctagtgcaattactatttatttc<br>tttgtgtattttaaacatgtatataataaatatttttcaggttcaacaatatatatcaatcctacaggctcttataaatattagtt<font color="green"><u>AAAATCAATTGGTA<br></u></font><font color="red">GGCAGGGCGCGGTAGCTCACGCCTGTAATCCCAGCACGTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAAACCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCACCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCATCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>TCAATTGGTA</u></font>aattcatgtatatatatgcatacctgtatcagtgagcgtgtgtgcatgtatgtttgtgtaaatgtaattgtatgtgtgtgtaaatgtaat<br>tggatgcatccttatatttacccttacctacaagatttccaagattcatttatgatctttagattatgggcatttaaagatttaccaaatacaactgtaa<br>tagtggaaaatatcaagatgttattaaattcaacttgtgcacataattgtttctataaatttatgtttcttgcaaaactggcagtaatgctcatgcacaa<br>aataattttctaaataaaaaataaaaacgttttctcagtcattaattcttaaaattatttctccccaataattaatgtgaattaattcttaattct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	490	179	NA	intergenic
0	chr18	25883689	25884004	1000128	0	+	238589; Ya5ac2585; RIP_Alu_chr18_025_01	TCTTGCAACCTACATACGCC	TGTGCTCACTCTCCTGACCA	SINE	Alu	Ya5	gtagcttaattgtagccagtatagagattgaaaaattgtctagtaatagataacaaatacatagtaattattattcatcaggcactcttttaattgcttt<br>acacatatcacttttttcaatctttgccaactgatgaaaaaggtgttattattattcacattttattggtgataaaactcacaaagttagtgtgacttac<br>ctaagcgtcacacagatagtttattaaataatgaacatttgagaaccggcagtccatactcttaacactctgtcactacaccctctaagaaaagtagtct<br>tggtcaccatatacactcttgcaacctacatacgcctatgttatgccagattggagacaattttgttcagtatatgaaaataagaatatc<font color="green"><u>AAAAGTGAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGCCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGTGAGA</u></font>aaactatgccaatattacaccaacagagccataaacttgggggcaagatcagaaaacatggtcaggagagtgag<br>cacaggcgttgtgtggcaaaagaagtcagccctacctgagcccacaccaggatatcccctactattcaaatcctcacaggagtccggttttgcctttatg<br>acactgtgcttgattgtaattgttcgtaaaaatatgtgcataataatgtctaatcatttgctaaattgtattttcaggtagaatactatgcctgacacat<br>tagaagtattcaataagtactttcaaaggattccaagttgaatactcaggaaaagggaaactaaacagaaaaaaaaaattataagcaattcctaaaactt<br>tgcaaaagacaaatta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	488	161	NA	intergenic
0	chr18	49179991	49180298	1000129	0	+	Ya5NBC244; Ya5ac2596; RIP_Alu_chr18_049_01	TGCAAGTAACAAATGCCCAA	ACAAGCACTGCCCTCTGATT	SINE	Alu	Ya5	ggtttatcccttcaaggtgctaccatagtaattatttgactccaccttttttatttccttgtatgtagattcagtgtcacaaaagagagaatattattgg<br>catcttttgagacaggtgatcacacagctaaggagaagatgggataagaccatggaattcccaactgatattgctaccaagctttcatgatatagaggag<br>agcttgttttccaaagagaaaaaacaagtcctcctttaaaaggaagaggagaggatgggatgctggacagtgcaagtaacaaatgcccaatacaattcct<br>atggctgaaatcttctgaaacttaaatgttaccttccattcatgtacttaataaagaaatggaagtataggaaaaaatgagagcc<font color="green"><u>AAAGAAATCAGAGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAGAAATCAGAGGG</u></font>cagtgcttgtctagtggaccaagatattaattaagggtttttaataatgttaatttataattgtcatgccttgagat<br>acgaacttggtaaggagaatatagtctatgtctttgagcgaattgtggtccaataaaaaagaaaaagcatttttttaaattcctgaagtaatatcagaaa<br>tataatcataaaattgtggacaagttaaaatcagagcaaacaaagtacagattctgtctggaaaaataagaggaagtttcacaaaataaatgaggtttga<br>gctatggcttagttgaattatcacatactaattccagggacttccaaagaatggaaaactcatgtgcaaaaatacccaagcaggtgtcagaaagatgatg<br>tgttaaag	UCSC	<UL><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID:11042148</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	453	130	NA	intron:DCC:NM:005215:18/29
0	chr18	44250159	44250458	1000130	0	+	pAlu18-45884052; 79823; Ya5ac2608; RIP_Alu_chr18_044_01	TCGTCTCTACCTCCAAGGAAA	TTTTGGCTGAAGTCCACAGA	SINE	Alu	Ya5	gaaagaaagagagaaagacaagaaaagaaaagaaaaggaaagaaaggaaggaaagaaagagatgtattattccaatcaatattcctgggggagagttacc<br>accacaaaaagataatacttaggcaaattaaccctaaattggaagtatcacaacatattttgatccaagaaccccagatgtactatgttaaatactcctt<br>ctttcctgctgtgtctcgtttgtatgctggaccagatagagaacaggaatgtgtaacactattttcattccattccaacaacaaaaaatatcaagcattt<br>cctactgctctgacactaaataattacaaaagacacaaccatgtacagagatgtcgtctctacctccaaggaaaacacaatct<font color="green"><u>AGAAAATAGGTATCATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AGAAAATAGGTATCATG</u></font>ggtctaaaaggaaaccaaaactgaaatgaaccaatctttaaaaataaagcaacataagagccttatctaccaaaatctgtgga<br>cttcagccaaaacggaatttaaagataaattcatagccttaaaatctatatattagggccttagaaagaaaatcaactaagaatccaactcaagggcaat<br>gtggtcatggtggcagtaggtttcccaatctccctataacctctcctgacaaccaagtagagcagataggatgcagccccccaaaaacccaccacctcag<br>ccaacaacaacaaaaatcccacctctaacctctaacctcttcaaccaaattaggtgacaggagacctatcaaacctgaggacatggacaaatacgccaaa<br>	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	459	142	NA	intergenic
0	chr18	53822135	53822426	1000131	0	-	Ya5ac2617; RIP_Alu_chr18_053_01	TGACAAGCACAGGACTGACC	ATTGGCTGATTCCAAAGCAC	SINE	Alu	Ya5	caatagacttatatttaacatactttgcttctgcccttttctttcatttgatgtttgtgggaaatatttgtggtgagctagaattaaaagtctatacttt<br>ttcattggagcacttggtcagagcagagtgctcataagatttagatcaaatgtgtttgatccctaccagcccagaacctggaacaggctactatcccagg<br>agagctaatcatggccacataggatagtggacaagagtcagggggacctcaggagccaggagactccagacagtcagcttaaatgtcttgctttagaact<br>ttcatgtggcagcaaccttttattcaatgtctattcatttgtccctgattagtgacaagcacaggactgacccattgtagctgttt<font color="green"><u>AATAATAATGTTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AATAATAA<br>TGTTTG</u></font>tgcatttaaagacgctgtgctttggaatcagccaattttgcagggcggaggaagaaaggaaactggtttgccatctggcatttacaaaatggga<br>aacaaatgcattgactttttcttcctctcaaaacttcacaaaaatggcaataaagagactgttttctgaagacataaacccataaggatgaagagcattg<br>aagagaagataacagataacaatagaagataaaaatttccaaattttgaaaattggagaaatgcttataaagcggcttagcagagccaaaaaaactgaat<br>tcactcttgaacctgggaggtggaggttgcagtgagccaagatcgtgccactgccctccagcctgggcaacagagaaagactgtctcaaaac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	390	84	NA	intergenic
0	chr20	30362897	30363195	1000132	0	+	Ya5542; 238005; RIP_Alu_chr20_030_01	TTTGGATTTCCAACAGCTCA	GGGGGTACGTGGGTGTTACT	SINE	Alu	Ya5	aaaaactggagattgagaagcgggccattgtagaggatcacagcttggttgcagaggagaagatgaggctgctgaaggagaaagagaaaaagatggagga<br>cctgcggcgggagaaggatgctgccgagatgctgggcgccaagatcaaggtaccatacccgtacccttccttaggcccttgccctgtcactgcttttgct<br>ttcatcaaacaacaacaaaaaacataaccatatgagggatgatgtctctcatcagttttggatttccaacagctcatgatatccagtactcagtaaacct<br>ctgtttaattgacatgaatatgattttttcacatttacaaaaatgaaaattgaattcataatgagaataattattatgtatgcacatagtataa<font color="green"><u>AGAACA<br></u></font><font color="red">GCAACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCT<br>ACTAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGC<br>GGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>GAACA</u></font>gcaataaaagtaacacccacgtacccccccacccagtgtaagaaatagaacaacatccatttttctttttttttttttttttgagatggagtttc<br>actctcgtcacccaggctggagtgcagtggcgcgatctcggctcactgcaacgtctgccatccgggttcaagtgattctcttgtctcagcctccagagta<br>cctgggattacaggtgcctgccaccacgcccggctaagttttgtatttttagtagagatggggtttcactatgttggcctggctggtctcgaactcctga<br>cctcaggtaatctgcctgtctcagcctccccaagtgctgggattacagacgtgagccaccgtgtccggcttttttttttctttctttcttttttttttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	477	185	NA	intron:KIF3B:NM:004798:2/9
0	chr20	6098954	6099279	1000133	0	+	Ya5_550; RIP_Alu_chr20_006_01	GCAGACATTTGCAGAGAATCC	CACCAGGGTTCCACAAAGAT	SINE	Alu	Ya5	gatgttattgtatgtggtccgggcgtgggatttgggatgctggacaaatggttattatgacttacttccaaaggccctctttgcttatttgcttcaccag<br>ctttgaatttcttggcaaatcctaatggaaactcacctatgtaatgggcttgaatttgactacacaaactcagatgtgcaagacatgcatgtcatgttat<br>ttttcaagaataaatttaaatctgtatctgagtcctaatctttctgagctgctgggatagtacatctcattcattgttggagtttcctgtctgcccccat<br>cccaagtcaggtataagcctcagagcagacatttgcagagaatcccatggtatccattaacaagctcatggtttaagtgcacattatcttttaa<font color="green"><u>GAGTGG<br></u></font><font color="red">ACATCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTA<br>AAACGGTGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAGTGG</u></font>acatcctttctgtggaaatgagaatctttgtggaaccctggtgctttggtccagttgtactgggggca<br>tcaagtagtcacttctcctgagatcctgcctctagcttgaggtgtggcaaagaaacaccaactaatttctcattccaaagcttggacaacctcactcctt<br>ttctctctgcttctgctatactgtatcaaaggcacctgtttctcccccatttctccagtaacctcaggcttttaaaaacagagggcaaacagggagatgt<br>tcttatatacctttttgtgttgcgtccagaaaatacatcctatctgattcttctataaagaaaacacagtatctaaatacgttttcctagcacagttatt<br>tctatgtttagttcctcttacaggat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	451	119	NA	intergenic
0	chr20	44560939	44561246	1000134	0	+	Ya55632; RIP_Alu_chr20_044_01	AACAAGGGGAAATCTGGACA	CAGGCCTCTTCCCTAGCTTC	SINE	Alu	Ya5	tttacatgactgcatccctggtcaacatcttgacagcaacctcaaagaccttgagcctgaaccacctagccaagttactctacaattcctaaaccacaaa<br>aacaatgagatagtaaatgtttactgttttaagttgctaattttggggataatttgttacacaacaataaataatacattaacctgttatggggttgaat<br>tgtctccccaaaatgtgtgttgaattcctatacccaagtacctcagaatgtgaccttatttggaaataggattgttgcagatgtaattatttaagatgca<br>gtcatactggaggagggcaggcccttaatccaatgactggtatccttataacaaggggaaatctggacacaaacatgcacactt<font color="green"><u>AGAATGCCATGTGAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AGAATGCCATGTGAAG</u></font>ttatgctgccacaagctacagaattatcagaagctagggaagaggcctggaacagatccttcagaagagagtatag<br>ccctgccaacaccccaacctgacttctggtctccagaactatgagatgtatctgttgttctagaacatccagtttgaggtactgtgttacggcagcccta<br>ggagatgaatacaccctctatatcatgtctttgttctttggctacttttaagataatctttattaaactagttttgatttctttatgtcttgaaatttgg<br>tgtcttattgtgctcttcatttttatcctgcttggggttcattaaacttcttggacttgtgaatttacattttccgtaagatttgaaaaaattgttccaa<br>cattaaga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	424	75	NA	intergenic
0	chr21	46212101	46212400	1000135	0	+	Ya5NBC24; RIP_Alu_chr21_046_01	AAAATTGAGAGACGAGGAGAAGGT	CCTCATCAATACTGTAACTGTCACAAC	SINE	Alu	Ya5	gtttccccggcacacacacctcacaccatacacaagaatacaccccagtggatttgggatctgaatgtaaaaaatgaaacaagtactagaggaaatacag<br>gtgaattcctccataccctgaatatgaggaaagatttttctaggaatcaaaacaaaagattaatttgactacatgaaaataatagcattctgcatggccc<br>aaaacaccacaaaggcaaaggaaaattgagagacgaggagaaggtgtgtgctgcacaatcacagatgcatagctaatattccatatattaaaaaattcaa<br>tatttgagggggaaaacatcaaaaactcaacagaaaaatgggcaaaagacatgaaacatgaatagatcatttctccaaaaatgtataaaaat<font color="green"><u>GATCTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGTTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>GATCTTTA</u></font>attatatgaaaagttgttcaacttcatttggaataagaaataaaaattaaaactacagtgagaggtcctctccaatctcgtgttgtgacagt<br>tacagtattgatgaggccgtggcctctcactggctgacgactccaagctgcacagccgtgcggaaggcagttcaatccgataaaactccgtgacccagca<br>actccacgttacgaattcacaccgaagaaaacctccaacgataggaagacttgtaggcacaaggtcatttgatgcagtataattggtggttgtgaaatac<br>cggaaaaaattaaatgctcctgtgtagacgtgtgttggctaagctaaggtactgccacatagtgccttcatgcagctgcacagagaatgaggatggtctc<br>	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	595	286	NA	intergenic
0	chr21	13502317	13502621	1000136	0	-	Ya5448; RIP_Alu_chr21_013_01	AAGAGTGCACTGTGGTTGAAAA	GGACAGCCTGACTTAATCTCAA	SINE	Alu	Ya5	gagtagaagcttcaaagtacagatgtgctgaggaacaaatgcatgcttgttacttttaaatcacttgtatatattctaatgttctttgtcctcttggagt<br>ctccaactcagattaatattttattacagcagttactgtttttaaaatggacagcctgacttaatctcaatttgttaacagtgatttaaatgaaatatct<br>ttgaataattaatattaagtattcatggtatataaaagactagttagctaggttaactttgcttcataaaaatgaagtgattgaagtcaatgtacatgat<br>gagctatatttcttgaatgcctttatacttgtatttgttgatttgttggaaagaaacctgaacatttattaaggtttcactatatggct<font color="green"><u>AAAGAATTGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCTCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAGAATTGTA</u></font>tacttttcaaccacagtgcactcttttttttgttattaaataagaagccttaatttaaataaaaatggagatttgcttgttagat<br>gattgtttttaagaataattgtgttttgtttctacatgcagaagctaattttaaatacttattgaattaaaaagaaaaaagtatgcaaaattataaaaat<br>tttggccagtatttttactgcttaaatagtgtaaatcatttttaaaagtcattaatttacctattaggaataatcaatggatgttacacagcatctttct<br>gtctctattaagaaagattttagcctggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacaaggtcagaagattg<br>agac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	592	277	NA	intergenic
0	chr1	58832215	58832529	1000137	0	-	Ya5ACA618; pAlu1-58417239; Ya5NBC347; RIP_Alu_chr1_058_01	GCTACCCTCCTATGAGTGACAGA	CATGCCCATTGCTTTACGTT	SINE	Alu	Ya5	tgactgtcaacaaatggggctgttctgtttattaattgctgagcagcaaacaacaaaactggcttgaacatactaacattttactatatctcaccattta<br>tgggtcataaattcaggcagggcttagcctggagacacttaggcttcatagagctttgactggggctactcagtggtattcaggtggcatctggtctggt<br>ctgaggatcctggatgtcatcactcacatgcctggcaccccgctggggacagcgggagactgggctgggctcagctggacccctccccctctccatgtgg<br>tctctccagtggggtagatggactcatcccatggtgcctcagtttgctaccctcctatgagtgacagagaaattgtgaaatgaaagataa<font color="green"><u>TTCAAATGAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAGATAA</font><font color="green"><u>TTCAAATGAT</u></font>ttgaaatgtcatcttcagtacacataattaacgtaaagcaatgggcatgcaatttttaataacaagtcatttgtt<br>tctctctatgcccaccaaatagatgtgtccatgatttttttaagtatcagtttgaagaggtgctactctgccatcctgtccaaggtgccactgtcactac<br>tcaccctgtgggagtgagttatggggctctcttcctttctcaatagcccacttggtctagagcaccaacctgtctctctcatggtctcccagcaacctcc<br>aatctgatcttgctgcttccagtctcacctcctgccactcatcctccatatagttttcctgcgatttttctgaaacacaaatctgctcagactattccct<br>tgcctaaattcaatt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	447	104	NA	intergenic
0	chr1	229369701	229369990	1000138	0	-	Ya5ACA593; RIP_Alu_chr1_227_01	CAGAGCCTTAAGACGTGAGAGTT	GGAAAGCTCAGAAAAGACAGGA	SINE	Alu	Ya5	gcactgcactccagtctgggcaacagagagagaccctgtctcaaaatattaaaaaaaaaaaagaattacaaatattaaaatatttttacctgtgatcaca<br>gtgcaactatgactccatgttctttgtcacgtatgtattatcccttttaatagaagaggtgtttcctctgagcctttaaagcctaacataccctttttac<br>aaaataaggtaagacagcaggctgagaagccacctgccctttggcagagccttaagacgtgagagttggctgggtgcagtggcccacacctgtaactcta<br>gcactttgggaagccaaggcaggaagatcacttaaggccaggagttggagacaagcctgggcaatgtagtaagaccctatctctt<font color="green"><u>AAAAAAAAAAAAGAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA</font><font color="green"><u>AAAAAAAAAA<br>AAGAC</u></font>attagagtgatcaaaagtcctgtcttttctgagctttccaggccacaccctctcccttgcttttgtgaggtgctgactcagtgggaatagtactc<br>ctggagtatcagtgagattttcttttaaggctcttcgatttaccatggctctcaaagaactccagaagaagagcttatctataaagaaaaaagaattatt<br>ctctaacctcaacttaggaatcaactcctacccagtttaattcagagctggccatctgcacccagcaggtcagagttctccctgagtgaggagttataga<br>tgttgacattctgtggcatgtcacactaggaaagagctatggtacacagtaacccttttctccagcttcaggaaaaacagattttcataa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	195	NA	intron:TRIM67:NM:001004342:1/10
0	chr1	116272643	116272945	1000139	0	-	Ya5ACA636; RIP_Alu_chr1_116_01	ACTTAAAGTGTTCAGCGGGG	ATTTTCCACCAACCAGGACA	SINE	Alu	Ya5	tgtataattagcagtttcaagggatttacagtctaccaagaaaataaaacacgtgcccaataaggccgctttgaagaattatgtgataaaagcaatgaga<br>gttgtatatctcatgtgcttgctgcacatgactttgagcaatcttgtgaaaacattctgcctcaatctctttcttaatatagcagagtcctagtgagata<br>acatcagagaacagaagatgattggtgatttattacttttcagtttttacaagtttaaagtggcttatatgacaaatatcgaagaatggtcccacctttc<br>ccagagtagggagagaccttactttagtctgtggatatgtttacttgctgactgtcaatgagaatgagacaatgacattcactt<font color="green"><u>AAAGTGTTCAGCGGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTTCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAGTGTTCAGCGGGG</u></font>agctctggactatatttttctttttctgttatgattcttgcttgtctgaagccttatttcttttggtcaatacctgtgcta<br>aatgtcctggttggtggaaaatactgttaggttcagattcattgaaattcatggcaaaaatgaaagaaagtccttaatcaaaggcacaagatagattttg<br>caaagaaattacagccagaaaattaatccaaaatgtgctttggtttgggcttctgtacaagcacgtcttggcggcaggtctggactcgaggttgtgggag<br>ctgcaggagtggaaaatggaaatggctcatctgcacctgccctttctccagagatttggctcatcatcctctcccatgacacacagggccagtccacact<br>cag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	442	139	NA	intergenic
0	chr1	79886774	79887077	1000140	0	-	Ya5ACA647; RIP_Alu_chr1_079_01	ACGTAAGCCTCAAAAAGGCA	GGCACTGCAGATACAGTGTGA	SINE	Alu	Ya5	aagcaagtcttttgagacatctggaaatcaagtcagagcaaattaccataaattatttatatatttagctatgtaagaatgtatttcagtttttggaatc<br>actgtggtttatctatttaccaatagaaggcaatgaaaacaggcatgttttgtctgctatgtacatcatctagaattaaaacaaaagtcagttttactga<br>atagggccattcatgctgtatactgtacaactcctaaacatactattcatgtaggccacaatataaataaatggtcatcctctttcctgaatctgtacaa<br>ccatttttggtgattatgccagattcagcagaaaaattagatattttaagtcagtgtttctagaacgtaagcctcaaaaaggcaact<font color="green"><u>AAAATCCTTTTAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAATCCTTTTAG</u></font>ttcacactgtatctgcagtgccgatactaatgcttaggttatagtaggtgctcaattaatatttagtgcattaataaatggta<br>aaactaatggcattgaaatcaatagtagtgattaatttaaaaaaatagaattctgacttccctcctgatttgctaagtcagcatatcaagatgggcatag<br>agattaaaagattattctaagcataacattttggaaccagcattgttgatttcacatctagctacaagactaaactggcatataaaattcaggatgtata<br>cagggaaagcaccaattctagtcttcaatgtaattctcaagtggtggttttctggtaagtttgtagacaataatacttaggagaaaatgtgtataaaaga<br>ctaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	375	58	NA	intergenic
0	chr1	86655036	86655340	1000141	0	-	Ya5ACA662; RIP_Alu_chr1_086_01	CCTGCTGCTTCTGTGTTTCA	TTGCCATTTTCACTGACTGC	SINE	Alu	Ya5	gtagtcaaatgacaaaaatgtagttcaagtttaagcttataaggctgtggttcttaatgcctcatccataaatgctccataaatggcagctgattctaca<br>gtaattattaattagtataattatcagtactgtcagctggagttctcttgctccccagagaagtaggtataattggcttttacctctgtcaatttcatgg<br>cccatggaagatcaagcccctcctaaatttctgcaactatgctgtatgcttgatttctcaaaactcctgcttcccagatccacacctgctgcttctgtgt<br>ttcactacattgtcttaaatgtagtatttggaatttctcaaagaaccatgtatatactgtgtttgcagcaatttagactttact<font color="green"><u>AAAGAGTTCTTAGGGA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAGAGTTCTTAGGGA</u></font>aactggagaggtatttatatcacagaaaaaaataaaacttaagcagtcagtgaaaatggcaacattcttgtaagggaaa<br>tagctgcactttagtcaagagcaggccgaggtggccttctggtgcagcatgactcagtgggtttggagcacagggcacaaccctgcacattatgtaacca<br>cgtgacacgaggtgcattaggtgatcacccatgtgagctcgtgcttggcttggagccattattgtctgtaaaaggtataattaccttgctaacactgtat<br>atacagcttgctcgcatccagagagagagagtaaagccatgtcaaaactgtctatgattcctcaatgtttttccagctacctaccacttgcccaccgact<br>cccct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	499	176	NA	intergenic
0	chr1	209028652	209028960	1000142	0	-	Ya5ACA766; RIP_Alu_chr1_207_01	CCTAAACACTCCAACCAAGCA	CCTCCACCCTCTCTCAATCA	SINE	Alu	Ya5	gcaatgaagacagaatggcttatctgacaaagatctaaagcaacaacaaaaacaacaataactttctataaaccctcattattttagaggtttggagaag<br>ctaaatccttcacagagatgcttcccaagattcttgtaagctgagtatggagaggagggggtaccccactgcactgccatcactgtggtgcattgctcca<br>cattgctccagggacttgaagttgctaggtaaatattgctgccacttgccatataataatgttgtttgctcatgcttagcacagagggaggaggctatgt<br>gtcagtgtcaccctaaacactccaaccaagcattaatactcatacagctgttccatctgaagcaattaaactaagtccgcactttt<font color="green"><u>AGAAAGAAGCTATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCCGTGTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AGAAAGAAGCTATA</u></font>atatgaataatctagaatttcagaaatgcaaaaccacttgtatcaggtagtgcacacattacctgattgagagagggt<br>ggaggcggagaccagttctctttcctaattctgtgtttgcttaagtaattttaaaaattggtttacagtccccgaagacactggcagctaggaaagttta<br>ttgatctttctaaaggaaattttcataactttatagtgtctagacagagggattggttgaatcataaattgtggtaaattaaggcagttgttatgataat<br>gatatgaagaagttttactggcatgcaaaatgtttcaaatataactttaagtgggataaaagcagaatatatagctatatatagagtaaccttaactaga<br>tcaaaatg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	493	172	NA	intron:KCNH1:NM:002238:9/11
0	chr2	215479770	215480071	1000143	0	+	Ya5ACA792; RIP_Alu_chr2_215_01	TTTGCTTGGAATCATTTCCC	ATCCCATTACCCTTTCCCAG	SINE	Alu	Ya5	ctttattttaccagccatgaagcataaagaatattataagtagttctctatttgttttttagtgaaaaaatttagcagtctcccatgtattcatataatt<br>aagttcagatttttttccattatgtcctttatgtaatcagatgatgatttcttagacatttgaccaagttttatctttcttttaattccgaaacatttca<br>gatccataaaaactgatgaaaataaattagattttacagtatactaaatgatggactatttaagaattacttaaactaatttttggaaaacaaattcttt<br>acattaaaaatatatttaaaaactaaaatagctgaactatttagattttataacttaccaaaaaaaacaaagtagaagagaaaagagtatt<font color="green"><u>AAACCTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACTCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAACCTTTT</u></font>aaaggaaatctttctttactgggaaacctacttaagaaggacagatgacactgggaaagggtaatgggatcttctgtaatgctgatgac<br>agcaatgaggtggtgatggggatagggatggaaatcccccatatggttaggaagctaagatgtgaaccaactgattttgaattaaaaattagaaccatct<br>tctgtaagacttaaacacaggaaaatcacaccaactcagcgtccttaattgcttttagtatctctgttctagttcatggtctttctttcactttcctgta<br>ttttcaatcttatggtcaggacaggtgcatgctgttttaattagcatattcacacctggaatgcaacaacttagaaattacctgcagtcacaaagaatgt<br>ct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	913	602	NA	intergenic
0	chr2	218254404	218254701	1000144	0	+	Ya5ACA804; RIP_Alu_chr2_218_01	GACCGTGCTTAAGACCCAAA	CATTTCTCTGGGAGTTTGCC	SINE	Alu	Ya5	aacaaaaatctccaggtattctatgatcagccaagtttagagaccactaacttctggcacaaactgaagaggggaggggtgggaagattcctaaaactgt<br>cctagaaatgctattatcatacaaatagaattggttaattagatacaagtattgtcattgacaaatacttcctaggagaaacagctagcacagggcaaac<br>ccagagaagaaagggcatgagacaggagggagctgaagaggaaggtcactgggtgccagagactcatttcaacaatcccacagttttacctggggccaga<br>ccgtgcttaagacccaaaaccagtttatgtcaggttgatgataggttaaaccaacacatctgttagccaattcaaactaatttttt<font color="green"><u>AAAAATCAGCACCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGTGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAATCAGCACCA</u></font>aaaactaattgagctcaagataaagcacacagatatggcaaactcccagagaaatgattttaaggaaggatagcaaatttcaaaatct<br>aactgaggcatggtgacccagcaggactgcagaggatcagggtacctccaaagttgtgaaaatcctgcagacaacaggctaaagaaaactgattccaaga<br>ttgctgatggaaccaagcagggaggggttgagactgcttttgtctgcaataaaattttccactggtcacacatttcttttttcttttctgagtttcaggg<br>tgggtgagcagatggctggagcattggaagagagtgagttcaggaatctcactaagaagggcaaagtaagatgaaagttttggggtcaggattgagac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	470	158	NA	intron:DIRC3:NR:026597:1/13
0	chr2	50562405	50562709	1000145	0	-	Ya5ACA807; RIP_Alu_chr2_050_01	ATCTTTTTGGGGGCAGTTTT	TCCTGTAGTGAGTTTTGGGGA	SINE	Alu	Ya5	aggaatgtcacaggtatttaaactggctgtcatttggatgagacaaaaggaaaaaactgaaactgtttgtacccaatttttacctaaaggtaaatttaaa<br>aatttaaagccattagatgaagttagcttggcatggatttatatccctgaactcgcaccccatctgccacactgttactggcatagagtgggtttaaaag<br>aagatggattactctacacgctcccatagcaatttcactttattatttcccatttagcatgcccaccaggtttcctcacagtctgttggccaaacataca<br>aacaaaatctgtcttcctgttgtaagtttcagaatcatactttaaaaaaatctttttgggggcagttttgtttcaaaatttaaat<font color="green"><u>AAGAAACAAAAGTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATAG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAAACAAAAGTTC</u></font>agaatattgaaagaattatatgttctgttgatatggataataacaatattaactccccaaaactcactacaggaaaacgt<br>taaggtctaaactcttatcttcttggggttgcccctccccaacttgtcccacgtaagtgctggtttgtactagattgggccatggatacatacaagtgtc<br>tgatttatctctttgtgggagacaattgaaaagtaactgctgtatctaaaaatcaaatgttgacttttggtaaaaaacattttgataaaatttgatttaa<br>aaagttttgaacataagaattctacttatgtatcagaatttgaatacctaatatttataattatggaagaaaattgactttgcctttatgagattactcc<br>attat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	445	125	NA	intron:NRXN1:NM:001135659:16/24
0	chr2	107292829	107293154	1000146	0	+	52792; Ya5ACA814; RIP_Alu_chr2_107_01	TCTCGGGAAATTAGCAATGG	TCAAGAGGCTTTGAGGAAAAA	SINE	Alu	Ya5	acaaaatatcatgtcatcagcaaagagggacaatctgagttcctctttctcaatttggatgccttttattttttctcttacctgatttccctagctagaa<br>cttccagtaccatttgaataggggtgatgaaactgagcatccttgtcttattccaattatgaaagaaaagactttcagactttcagctttttcccatgaa<br>tatgatattagcagttgatttgtcatatatagcctttattttgttgaggacattgactaactcagttgaacaagattatgttagaaagaagaaacaaact<br>ggaatgggttgttataatacttaggtggtaagataatgagttcagtttgagtccttggcaaatctcgggaaattagcaatggctt<font color="green"><u>AAGAAAGAGGGTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGAGGGTCTT</u></font>aaaagcaattttgagtcctctgttttttcctcaaagcctcttgagtagtttgaaatgtg<br>caagaaaattatggcttgccgggcgtggtggttcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcgcaaggtcaggagatcgagact<br>atcctggctaacactgtgaaaccccttctctactaaaaatacaaaaaattagctgggcatggtggcgggcgcctgtagtcccagctactcgggaggctga<br>ggcaggagaacggcgtgaacccgggaggcggagcttgcagtgagccgagatcacgccactgcactccagcctgggctacagagcaagattctgcctcaaa<br>aaaaaaaaaaaaaaaaaaaaaaaaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	423	82	NA	intergenic
0	chr2	231704440	231704744	1000147	0	+	Ya5ACA868; RIP_Alu_chr2_231_01	TGCAGGAGTTTTGCTTTCAG	TCAATGTTTCAGCAGGCAAC	SINE	Alu	Ya5	gttgaagaaaccagttatctctgttttgtttcccatggtatgaattttgctgagtgcatctttacatgtagtttaatgtgttgtttggtccttcacattt<br>cctgtaaattgacagttgaatctacaagcttgatcacattcacattttttttagggtggtggggctggcggtacacacagttatttccattttcatgatg<br>ttagcagtcgttgataatcatgctgcgatctattcattatatgttacaaaatggtgatataattttatcatttattaactgttcctttaaaagtttatat<br>catatatctctgtgtgtatatataaagattaatgtgcaggagttttgctttcagtgaatgtttgcattccaatcattgctt<font color="green"><u>AGAAAGTTTTTTTGCCCTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AGAAAGTTTTTTTGCCCTT</u></font>ttagagttgcctgctgaaacattgaaataaacatataagaatattatggttttactgtactcttgaaaagattgaa<br>tgtctaaactaatttaataaagaatttctcatttcttgtcttaacacttgttttttctaaagaatgtgtcagagttggaactgttgttagattgagacac<br>tgtcaggttttttatatgcttttgagtttatagccttcacagcctatttcagtctttattgcaattaactaggtaaagttctgcattaggctcctggtat<br>ttatgttctcaggcaaaattttttctaaacctcatggaattgttagtgccttttgggaagcaaaacttaagtctaacttctatcccctttcagaaaactt<br>ttcta	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	415	91	NA	intron:PSMD1:NM:002807:16/25
0	chr2	173859991	173860291	1000148	0	-	Ya5ACA924; RIP_Alu_chr2_173_01	AAGGGTGTGATTCTTGGAG	GGCAATATACGATGTGGAAG	SINE	Alu	Ya5	ttagacatataaaactccttctacataacctccaacctgtcacaagcaagggtgtgattcttggagctctagaagtttattataataaaaaattagagct<br>catgcctgtaatcccagcactttgggagactgaggtggggagatcacttaaggctgggagcctgagagcagcttgggcaacataaggagaccccatctct<br>acaaaatttaaaaattagctgggcatggtgacgtatgcctgtagtcccagctactcgggatgctgagtggagaggatcacttgagcccaggaatttgagg<br>ttgcagtgagctgagactgcaccactgcactccagcctgggcaacagagcaagactctgtctccaaaacaaacaaacaaaatggat<font color="green"><u>AAAAAGTTAAAGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATAGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGGGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAGTTAAAGAG</u></font>aattcttccacatcgtatattgcccattacaaaagatttctgctgatctctatcttcttcaggggagcatggctattttctttca<br>atttattgctatgacatgtcaggaggtctttctagctcagatttttttccctctctattaccaaataaagcaatttgtcttattttggatcagaataata<br>atggtaattaggtcataaggcatattgctgtgaaagtaaaaattcgatggagtatctttgaagcatgttaccaggatactttggagttgggtttgtggaa<br>aacatgagcttaaattaaggtaaagttttgatcctcagcagtactgcttgaacctgataacaaaactgtcactgaatgccagtgcacacagaggtccttg<br>t	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	693	377	NA	intergenic
0	chr2	194106754	194107078	1000149	0	+	Ya5ACA949; RIP_Alu_chr2_194_01	CTTTGGTGTTTGCCAAAGTT	TGGCACAATTGAAACAGGAG	SINE	Alu	Ya5	cccatatactcaaatgatgtacacaataatgtttcttccatagataactattgaaaatctgtagaatctcaggtaaaggttatagaaacggttcctgtga<br>tgcaaggaaatggaagagaattttaggctgctataggctgcaagacagaacagaataatattctgaagagtgtagtcttggttgattaggattatgggag<br>attcttgaaattaaattatatgaataaatttatgaggaaaaagggtcttgatgttttcactctgatgacaatgtttgatgtaaagataataaggtggaaa<br>ttataagctaaaatgttatctactttggtgtttgccaaagtttaaaagagatgaacagtgagatacaggaaagacaacttgattt<font color="green"><u>AAGATATTTCTCATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATATTTCTCATT</u></font>atggtcatactttaactttctatagttcagtatttagtctcctgtttcaattgtgccaga<br>tgtaaattttcatttttttttcattttggattagaaccaaagatatatgttcagataaggcgaacttctatctatggaactgacttataaaaaacagaat<br>gtcacacaataaaattacttatttccagtgttatgaaggtttttaaatcttttccagaacactttttctttatagaatggagaaaacaaagaaaaaatat<br>acatacacacacacataatttgaatgtatataacctcatccattaaatgttgatttcagatacggaaacatcattttgtctctcctggctcttggttact<br>agctaatagccaatcaggatcatat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	476	136	NA	intergenic
0	chr3	17923558	17923862	1000150	0	+	Ya5ACA1003; RIP_Alu_chr3_017_01	AGGGTCATCGTCAGGACAAG	TAGAGGCCCATTCCACAGTC	SINE	Alu	Ya5	agcccagcttagaccaagtgtccctgggctgagctgcagatctctgaaaataaatgaatgtaggtttaatccactgacatttcgggtagtttctttggta<br>gcatttttgtcgcaatacataggtagactggggtcaacatctgatctctaaaactcaccagctgtgtttttgagctatacccacccttttggatggtact<br>cttacatttaaatggggcaagtagtatttatctttagggtcatcgtcaggacaagaaattatacatgtaaaatgctgagcttggggcctctatttgtcca<br>tttgcattgctataaaggaatacctgagactgggtaatgtataaagaaaagacgtttatttggctcacagttctgtaggctgtat<font color="green"><u>AAGAAGTATGGTGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAAGTATGGTGTC</u></font>agcatctgctcctggtgagggcttcaggaagctttcactcatggtagaaggggaagtggagccagtgtgggcagatcaca<br>gggggagagagggaagaagaaagagaggagggaggagtgtcagactcttttaaacaaccagctattgctggaaagaatagagcaagaactcactcattca<br>tcatttcgagaatggcaacaagccattcatgtgggatccacctttcatgatccaagcacctcctactaggccccacctccaatattggggggtcaaattt<br>caacatgagatttagaggggacaaatatctaaaccatcaggcccttgaagtttctgctatagcacctggcccatgcgcccaatgtgtgttgggtgcgtga<br>ataga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	957	637	NA	intergenic
0	chr3	59100274	59100589	1000151	0	+	Ya5ACA1054; pAlu3-58979974; RIP_Alu_chr3_059_01	ACATTCTCATCTGGGGCAAG	GCTGCTAACAGGAATCACTGC	SINE	Alu	Ya5	gttatagattgacaaaaagacacacacacacacacacacacacacacacaggcgcgcgcgcgcgcacacacacacacagccagtgcctgatttaaataga<br>gaaggacatagaaactaattggaagtaggatggccacagatatcatggcaaggcttattcatggcccctagttccctgttgaagcacaacaggtcctgca<br>gactggggcacttctgttataccatgtatctttcatgatcaaagcttacatcatttttccagcagaacttttatttctgtttaagggaaggttgataagc<br>cttatgcttttcattgtgaatcatatatcatcagcaggccacattctcatctggggcaaggacatagtcacagaacagatgcttctaaa<font color="green"><u>GAAGATCTTTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>GAAGATCTTTG</u></font>cctccagttgccagtgctctggaaggccaatttccatgcacattgttacttgaatttgcatttttctgactag<br>cagtgattcctgttagcagcactgtgagaagatcaagttggaccgtttagttgtggaaaattataacgtcaatagttttaggtcttttggcctgctaaaa<br>ctcttcagggaaagtaaaggctttgtcgccaactttctggtaactgcatgggggaaaaatctggaagtcttaatgtatagtatggatacatttaatgaat<br>tgttctgttttcagtatgatgccccatcccattctcaactacacttggtgtcctcttattttaccatctccaaaatttaaaaaataagctattttgccag<br>gataggagagggtatt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	480	153	NA	intergenic
0	chr3	128813221	128813533	1000152	0	-	22588; Ya5ACA1070; RIP_Alu_chr3_128_01	CGGATCCCTCAAGGATGATA	TCCCCAGCTGACTTCTGTCT	SINE	Alu	Ya5	aagggtgactcatctgaccatcctaaggattaggccaaaattcaaacctaaaaagtctggcttcagactgcatgctgcttctgttagttctttaaaatct<br>ctaagtgttgggcatgaccctgatctctttaatactttaccagatcagtgtccagggcccacggaaggcaggcagggccatgaaactgacagagtagggg<br>acggggtaaacctggggacacaggccctacctgcaagggcagctatgcctcagctccgtcagcgttaccagagaggaacacagagccagcacccacagat<br>cttggattttcaaaaagcatccggatttctatgtgaagtctccggatccctcaaggatgataactaactcaaaataaaaacaaatac<font color="green"><u>AAAAAGTCAGCTG<br></u></font><font color="red">TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAGTCAGCTG</u></font>cagaagcctgcagggcttcctgctggagatggaatctgcagaagacagaagtcagctggggacaagtgagggag<br>aaggtgctctatgtagacacaaatagcaggcatcaagacacgggagcggggtagggctgcctccatttggggaacaagtcgttttggaacctggggctcc<br>agaagcacatggggatggcccgggcagatgccttattagtgcccaggcatgccatgcccgccacacgctcacctatgggtctctcacctcttcaatcaac<br>agagtgggagattagtggctgaagctcaaggcaaaggaagagaaggtgccagaagagagttcctcaagcatgcagctcctttggcgtggtaggcacagac<br>acagataatcatg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	442	120	NA	intron:MCM2:NM:004526:8/16
0	chr3	156131068	156131373	1000153	0	-	4679; Ya5ACA1100; RIP_Alu_chr3_156_01	GCATCCTACAAAGCCATT	GCCTGGGCAATAATTTTCAA	SINE	Alu	Ya5	tcattatttgtcaacagacaaatgggtagatgctaggagtaagtagaggagtaagtaaattcagagggaattttttttttgaagaaaccggggcaaggtg<br>agggtggctttagtttatgatattacccatgctcgctattatgactgtgcttcctgtactaatttccgtatctgttcaagctgaatccacatgcctgttg<br>attggtactttgcttggtttcagggacctctctcaaatgtagcctagagcttctgaataaaaaatatcaagttaagatatttgatgaaagtttttttcta<br>cttgtttgccttgatttatatagtgcatcttacaaagccattgaaattaaaccacatatccataatctgttaagaaaaggtaagt<font color="green"><u>AAAAGAAATAAGGTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAGAAATAAGGTT</u></font>atatgaaattgggactattttgaaaattccaggaagtatgctggcatatatttctcaattgttttctcaacattttgaa<br>aattattgtccaggctgtagatcatgttgtcagtggcttctccccatctaataaaatatgaagaccctctccaccttttggaggaaaatgctggtatctt<br>ggagtttgatactaccgtgtagaaaccaatatactaacttgtaagagacaaaagtttatttactccacgtattgttgaaattttatcataaaaactgata<br>ttctttgggaaaatgattataaaagccacaaattttaacatctattcggttgtaatttaaaaatacctgaattttcagccatttgcagtggctcatgcct<br>gtaacc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	492	170	NA	intergenic
0	chr3	177625727	177625728	1000154	0	+	Ya5ACA1130; pAlu3-177545061;1104685598701; RIP_Alu_chr3_177_01	AAATGCCTAGTAGGAAAAAGGGT;NA	TCCTTCCCTGCATTCATTCT;NA	SINE	Alu	Ya5	gttccctaacacaatctattacacataatgaataaaaattaatctcgtggattaaagagataagtcagacacaaaactgtaaaacaggaaaggaaaatga<br>taattaatttaccttataaaattaaaatcttcctttagaaagaaataattaatgaagttaaaaacaaatgacagtttgggtgaaaatatatgtatcttac<br>tcaaaaggttgatttctatgagaaagaacttatataaattaacttgaaaagaaaaaaaaaatgcctagtaggaaaaagggtaaagaaatataaacaggac<br>actcacagaataaggaatgaaaagctactaaatgtatcaagcaattatgagaaatgtcaaaaaagagagattttttccccctgatt<font color="green"><u>AAAAAAAAAAGAAA<br>TT</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AAAAAAAAAAGAAATT</u></font>aaagactaaagaatgaatgcagggaaggattcagaagaactggccttgacatgcattgttagagtgaatgtg<br>gtccatggggtctaaatggagacagtctagcagtttttactacattctaaaatgcatcgccgggattggtcgctcactcctgtaatcccagcattttggg<br>acgccaaggcgggtggattgcttgaggtcaggagttaaagaccagcccgaccaacatggtgaaaccctgtctctactaaaaatacaaaaactagccgggt<br>gtggtggtgggtgcctgtgatccgagctacttgggaggctaaggcaggagagtcacttgaacctgggagtcggaggttgcagtgagctgagatcgcacca<br>ttacactctagc	Other;Venter	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	55;NA	NA;NA	NA;NA	NA;NA	intergenic
0	chr4	59302363	59302666	1000155	0	+	Ya5ACA1161; RIP_Alu_chr4_059_01	AGTGGGAATCACTATGATGG	GTCTTGACCTCGTGATCTGT	SINE	Alu	Ya5	tgtattaataaatgacacattagtaatgtgtcatttattaatacatgtgtcatttattaatacatgtgtcatttattaataaatagttttccagggtcat<br>gagtttagggacaaagtctgttttcagtcattattgttagttgttttctgagttcatctctattaataccttggaaaacacagccaataacaatgaacat<br>acagtattaatactctgtatttctacctatagcctcagggttttaagattactagacattatctgagtttcaaatggtcaaaaacaagatttgccagaag<br>ttttactatcataaagtgggaatcactatgatggcctgggttcaagttttcacagcagaaacttatgtaattgtaagtcctctt<font color="green"><u>AAAAAAGACAACACTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCAGCCACTGCACTCCAGCCTGGGCGCCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAAAGACAACACTG</u></font>ctgggcgcggtggctcacgcttgtaatctcagcactttgggaggccaaggcggacagatcacgaggtcaagacatcaagg<br>gcctccttgtcaacgtggggaaactccgtctctactaaaaatacaaaaattacctgggtgtggcagcatgcgcctgtagttccagctactcgagaggctg<br>aggcaggggaatcgcttgaagccaggaggctgaggttgcagtgagccgagatcacaccattgcaatccagcccggcgacagagtgagaatcggtctaaaa<br>aaaaaaaaaaaagacaatactaaattataaatataaaattaggtacaaaatcaagtacttgtttataatgagaaaataaataaattacaaaataattaca<br>aaca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	479	159	NA	intergenic
0	chr4	66437986	66438250	1000156	0	+	Ya5ACA1168; RIP_Alu_chr4_066_01	TGCCTTATACGGTTGTTAACCC	TTCCTTTGCTTTCTGTTACCTG	SINE	Alu	Ya5	ataataatcaaagaatttgagcaattattcaataatcaatgaatatcactatttagtgttaagcacccttccaagtacttggtaaaacagataaataaga<br>cagttttttacaaaagaaggtaactgtctaatgaagaacacacatacacacttaaacaatatattacattactttgtaaacattttctacaatagaagaa<br>gtcattagtgctataaaaatacaaatatgatctgtatgatgcggcctggtgactctggaagattttattctcaccttcttcaaaaaatattgaggaccta<br>tttacatgccttatacggttgttaacccttaggatacaaagataaagcagatctcctgcacttaatatttcatggtctaaaagtc<font color="green"><u>AAGAAAAACAAACAA<br></u></font><font color="red">TTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAACTTGCAGTGAGCCGAGATCCC<br>GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAAAAA</font><font color="green"><u>AAGAAAAACAAACAA</u></font>atatatagaaaaagtaatga<br>atgttatagtggaaagttacgtaacaaatttatgggataaacatgaatattaaagaggaagtttccaaaataaaatatcaggtaacagaaagcaaaggaa<br>cacatatggaaaaaaacaaatttcaggagaatacaatgtacagaggagtgtttccagcagagcgtgcctataggaattagccaaggagaaaactagagat<br>atgggcaaggccaggtcaggagggccaatgaaactatgattgagaattttggatcttttttttagctcattctttatgtttttgcttctaaattttcttt<br>cacataagaagcaaacattctgatattttgggttacaattatacctttgaggaaagttttctaag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	493	214	NA	intergenic
0	chr4	253969	254238	1000157	0	+	Ya5ACA1185; RIP_Alu_chr4_000_01	CAGCTTAAAGGCTTTTCCACA	CCTTTAGACAGTCCGGAAACC	SINE	Alu	Ya5	gcagagcttgcagtgagccaagatcgtgccactgcactccagactgggggagagagcaagactctgtctcaaaaaaaaaaaaagagagaatttgaagtct<br>ttgccacattttaatttttcatatggcttctcatcaatatcatttatcttatgtttagaacacagtgaggtgtggttaaaagctttctcatatttttcac<br>atttctggagtttctctccattatgaattatcttacgattagaaaagattgaggaacatttaaagactgccacattcttcatattggtaagacattcctc<br>cagtacgagttctcttatgtttaagaatgctggagtacagcttaaaggcttttccacatcctttacacttgtatggttttatctccagt<font color="green"><u>AAGAATTCTCC<br></u></font><font color="red">CTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTA<br>GCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGAT<br>CCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTCTCC</u></font>tatgtacataaaggtttcc<br>ggactgtctaaaggctttgccacattcttcacatgtgtagggtttctctccagtatgaatcctatgttcaattagggttttggagctattaaaggtttta<br>tgacattctaaacatttatagggtttctcaccagtatggattctcttacgtttagcagaatttgaggatgaggtaatgactttgccagattccttacatt<br>tgtaggtgttctctccattatgaattttctcatgtttatttatgggtgaggaccgtttataggctttcccacattctttacatttgtaggattcatctcc<br>catatgaattttcttatgttcactcagggttgtggaccatctaaaagctttgccacattcttcacatttg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	378	96	NA	downstream:LOC654254:NM:001137608
0	chr4	98400301	98400605	1000158	0	+	Ya5ACA1204; RIP_Alu_chr4_098_01	TTCTCATCTAGAAGCAAAGGATGA	TGACCAGAACAAAACTTGCAC	SINE	Alu	Ya5	tttttaacttctttgccatgggttcaaacttcctcctttagcatggagtagtttgatcatctgaagccttctttgcctcttctagctaactataaaaagt<br>atttattgtttttaaaatgttgcacatctttaataaaataatgttggttaaaggagttttttattttgaaaagtactctgtaaatggcagtcatttattc<br>acctatccattcatgcatttatttatttatttatttattgctttattctactaaagaatgaagtcatctaaatcagtagaacactgattaccaaacctct<br>gtattgtttcagatgctatagtgacttctcacttctcatctagaagcaaaggatgagtaatatttatgacaacctattcatttt<font color="green"><u>AAAATTATACCCTGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAATTATACCCTGCT</u></font>aattcaaatttggttttacatgtgcaagttttgttctggtcactttttaagttatgtttcagtgagaaataatcagatt<br>gaaacttgcaaatatttatcaataagatggtcagtttatatagtgctttaacttggcagcacctgcttcaatttctcctaacttcctgaaaaagcttgga<br>aaagaaatacgtcattcgtatttctgttcaagtaacattccttaacgaagccttcctgaccttcctgtgagaaatgatggtctttcctctttctccccat<br>gttaaggtactttccaacttggccttattttctttaaaacatgtatatcaatgggaaatcatcatttttgtgtatgtattatttaccttctttccaacaa<br>ggtct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	431	110	NA	intergenic
0	chr10	60654928	60654929	1000159	0	+	Ya5ACA1250; pAlu10-60877322;1104685134451; RIP_Alu_chr10_060_01	GACCTGGGCCAAAATGAGTA;NA	TTTCTGAGGAGGAGGAGGAA;NA	SINE	Alu	Ya5	ggttttctttttgctcttcacaaaatcaaaacaattctcttatttttgttgaaattttggtagtctgttgaatgaaaagattgagaaatattgactagac<br>ctctaaagccatactcagaaagaggagtatataaatctataacataaaaatagtaactctgctatttactcttatctactaatattataataaactgcat<br>aagaataatctggtgaatgctgccagaaatgtcaagttaaaaaaccaaaaaggatgaaaagtttaaaagtctgataaaaaacttactgttcttaatatat<br>attaaagaatttccaagtaagatggtacttttgggcatgagcatcaaactatcccctccataagacctgggccaaaatgagtaa<font color="green"><u>GAAATGAAAATAGAGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAG</font><font color="green"><u>GAATTGAAAATAGAGG</u></font>aaaactcttcttaacaataaaacttatgtaaggattccatcaacattatactccctgagtaatatgtgtc<br>atataatttatccatggaatcccattgtaaaagtttgtattcctcctcctcctcagaaaatcacacagtattgcaggaaaaatagtaaagaagctcttgg<br>aagatctgtgctgtcaccctgtgattggatagagtgaaggatggacagctagcaacttcacttggaattttccttgttgccatggattaataattattga<br>aagcagatatgctaggggccacagaaagtgaagctttatctcctgatggtaatgaggcttacctctaaagtggtaagacacttctccatgggaatcagca<br>attcaagggaagaa	Other;Venter	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	60;NA	496;NA	170;NA	NA;NA	intron:PHYHIPL:NM:032439:1/5
0	chr4	142146391	142146691	1000160	0	+	Ya5ACA1259; RIP_Alu_chr4_142_01	TTTTGGAATACAGCCCATTTG	GCACATTCCAAGATTAAAGTGG	SINE	Alu	Ya5	caagtattgaggaattccatattcggtgttaagcagaggagaaggagcctacagatgagtcagaaaagatatacccaagagataggaggaaaaaccaggc<br>aggaccaatgctacaattaggcctgctaagagagaaagcattgttttcagggaccagaactgtaggataagtaagcttccttaaggtggtatgagggtct<br>atgcactgcacaagtacttagaatatttttcctgaattgcagataaaacctatgagaaatgtggctacaacaaattgagtgttaaccaacccatcttaca<br>aattgatttttggaatacagcccatttgtaatttgagtatatcatgtactatgacagaggaacacgttttactttagttagataagaa<font color="green"><u>ATATTTTAAAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGA<br>C</font><font color="green"><u>ATATTTTAAAAG</u></font>aatggaactatttttttctaataccactttaatcttggaatgtgctataatttgaatttctatttttaaaagctagaatgaagagta<br>ggaaggaaattatatatatacacacatatatatacacatatatatgtgtatgtatatatatacatacatatatacgtatatatatacatacatatatacg<br>tatatatatacacacacacacacatttctccatttcttgggcatttttcttttgtctttgaccactttagctgtcagttctgtaatctcctataaactaa<br>ttgaactcttccttctgtgtgacagcagtaaaattgatcaacaagatccctgggaaagtgacatctggcaacaaggaacaatggaagggaatacagctaa<br>t	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	451	138	NA	intron:RNF150:NM:020724:1/7
0	chr4	167114739	167115039	1000161	0	-	Ya5ACA1274; RIP_Alu_chr4_167_01	AAGCCAGATAACCTTCTCGGT	GCTGAGATCAAGAGGCCAAC	SINE	Alu	Ya5	acataagcaggtactgccacggtattttggcaatggagatttggagctggcaatgagaatcccatcctgggttgttggagcttcagcaaaaaatagcctc<br>tgggatataatataagtataattattaaatctttctcttgtactgatggtaaattgtaaaaataaatgctggtgttatatatccagagtttgtgcaatac<br>agggaaaatagtaactctaaggatagtaaattgggtagctaatgctaaactccattaatgcttgttaaatgttaacaaaagattggtcacaattaatgaa<br>tcattaaaagctatgagtgaaagccagataaccttctcggtaatatacaaaaatactgtcatctcctacagcttgatagcagagaaaact<font color="green"><u>AAAGATGAGG<br></u></font><font color="red">CCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGGTG<br>AAACCCCGTCTCTATGAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAGATGAGG</u></font>tccaggacttaatcctaagagttacagagtgcagttggcctcttgatctcagcaggtcagctatgccagggtacagttctactttgaaa<br>cccagacacatgggatgaaaaaatataatcttgaaactccagacttctctgatcctattaagaactaacgctggttgggcacagtggctcatgcctgtaa<br>tcccagcactttgggaggccgaggcaggtggatcacctgagatcaggagtttgaaaccagcctgaccaatatggtgaaaccccatctctattaaaaatac<br>aaaaattagctgggcatggtggctcacacctgtatttccagttgcttggaaggctgagacaagagaattacttgtacctgggaggtgcagattgcagtga<br>g	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	444	133	NA	intron:TLL1:NM:012464:1/21
0	chr5	125427899	125428200	1000162	0	-	Ya5NBC18; RIP_Alu_chr5_125_01	AGACCATCTTTAAGAGGAATACCATGT	GAAACGTAAATTTGTTAATAAAGTGGTGAC	SINE	Alu	Ya5	tttcctcatttttacttgctaaacttatgccttcttcaagagttactctctttgctagtgctatgggggcagcattgtctgggtttatgattctggatta<br>atgccagtgtctatattaataagaaaggaagggtgactctgtcccgatatttagcaggggcagggagttccctcagtttatctgacttgacatggtaaaa<br>aaaaaaaaatgaatgaacatgttagtatgaatagctataaagttgggagtctctaagcaaggagctccaatacagtgatcaatgtcaacaagaatgttgc<br>catagcatagaccagtatgctttttaattgatggagaccatctttaagaggaataccatgtggtagtaacaaaggcaacttcagctg<font color="green"><u>AGAAATGAAGCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGTTAACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCGTGCAATGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AGAAATGAAGCTC</u></font>atagtacaatgcattatattgtacttgctctcttttccctgtgcacatttttttgtgtgtaacatgttctgtttgctttagcggg<br>tcaccactttattaacaaatttacgtttcctgtttctttaaagaaccactttcaccctgaccacattgctagagtgtcactatgttccctaatcaatttc<br>tgtaaacacataaccatggggtccatacagcttcaagagtcacatttgacatgccaatcctgctgcatgctcctggctgctttggctgttgtgccacttg<br>agcagtctcgccatgttcatagggggtttgcattaatagttacagtttttttctgtgcaagtacctctcatcatcttctgtcagtgttttgcttatttgt<br>tt	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	65	495	180	NA	intergenic
0	chr5	131988139	131988491	1000163	0	+	Ya5NBC1; RIP_Alu_chr5_131_01	GGAATAGGAGATCCAGTAACTTC	GTAGTGTTCAGAGACAGCACTTTA	SINE	Alu	Ya5	ttaacattacaatgttccctgggtccaaaatggctcatagaattatatgcctgcaccaaatgagaacttttgttttttaacttctttgaatattgccatc<br>tctcctagatattagatccagcagtttaaagtggttagtcttggaatttaaggtgctgaaacaagaacataagcaaaacttaaggaattcttgcccagta<br>gactacacatacatatatttgttttttgttttttggttttttttgcctttaataattctttttagtcttctcagctacctcatttatgcctttaggggac<br>tttttagtttttcttagttctttaacaacagatgctgtgtatctaatagacttatcaaacattcattgagcattaaggaataggagatccagt<font color="green"><u>AACTTCT<br></u></font><font color="red">AGCAAGGATATTATAGTTTATTTGAAGAGACACAAATCAAAACAGATTTTTGTTGGTAAAAACCTATTTTGCCAGGCTTAGTGCTTACGCCTGTAATCCT<br>AGCACTTTGGGAGTCCAAAGTGGGTGGATTGCTTAAGTCCAGGAGTTTGAGACCAACCTGGGCAACATGGCGAAACCCCATCACTACAAAAAAATACAAA<br>AATTATCTGGGCGTGGTAGCACACACCTGTAATCCCAGCTACTCAGAAGCCCGTGGCGGGTTGCAATGAGCCAAGATTGTGCCAGTGCACTCCAGCGTGG<br>GTGACAGAAAGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAATCACCAA</font><font color="green"><u>AACTTCT</u></font>ttttggaataagataagttggttgtgatggaaaaataaaaa<br>tggatattaaaagcaagacattggactttgtataaaagtccaacatgataagttttaccttttttaaaaagcctcagaagtccataatacatggttaaaa<br>gtgctgtctctgaacactacagatgtccagattttgaattctttttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcg<br>ggatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccactacgcccg<br>gctaattttttgtatttttagtagagacggggtttcaccgttttagccggga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	544	185	NA	intron:RAD50:NM:133482:21/25
0	chr5	22832383	22832685	1000164	0	-	1159; Ya5ACA1318; RIP_Alu_chr5_022_01	AAATCATGAAGAAGAACAAAGT	TGTTGGCCATTTATATGTCTT	SINE	Alu	Ya5	agctctctggatctttttttttttttttttttttttataaaggcactgatcccattcatgggggctccaccctcataatctatttacctcccaaatgccc<br>ccctccgaatactaaagggttagaatttcaacataggaatttgagcgtgacacaaacattcagtctacagcaaatagtcccctgatttttcattaggctt<br>cccttgctttctatttttgacatggataagaccacccattattaactctttgcaatgtgttgtgagattagacacagagtcagttttaaatcatagtatt<br>attttatgaaacttgcttttcctcctatgatataattccttactattttatgtgagattaaatcatgaagaagaacaaagtattt<font color="green"><u>AAGATAAAAAATCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGATAAAAAATCTG</u></font>aacagaagtttttcaacagaagacatataaatggccaacaggaatatgaaaaaaatgttcagcatcctactaataactgaaa<br>tgcaaatcaaaaccacaataaaataccaccttactccaattagaatggatattatgaaaaagacaagataaatgttgtcaaggacatgaagaaacaaaat<br>tcatgcactgttggtgggaatgtaaattagtaaagccattatggacaagagtatggaagttcctcaaaaaattaaaaatagaactaccatatggtccagc<br>aatctcataatggggtatatatccaaagaaaatgaaatcggtattcgaaagagatatcagcacttgtatattattgcaacacctttcacaatagccaaga<br>tgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	400	81	NA	intron:CDH12:NM:004061:1/15
0	chr5	168327024	168327321	1000165	0	-	Ya5ACA1370; RIP_Alu_chr5_168_01	TCATCTTTTCTGCCAGCCTT	CTAAGCTGCCTTGCATTCCT	SINE	Alu	Ya5	aaggaatggcatatttaatgggaggggagagataaatcattcttaatctttatgttcagggaggagaatggtaaggaatcttaaaaacccactctccttt<br>ccaaggcctggggagagccatgaggaaggaatttgaatgcctgccagagcaggtgagcaaagcttgggaagagaatctggtgcaggcacgaaagtgctag<br>caggaggtacgagagtgtctgaaatctctactggagagtgcagacatcatcttttctgccagccttgcatggtgggaagtagagtgggaacccgaggctt<br>tattcttcctgcagatgaaggctgaccacaccagatattgtgattgtagagggacaggtgcaatgaaaggaatgaaaaatccctc<font color="green"><u>AAAGATTTGAGATGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAGATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AGATTTGAGATGG</u></font>cagtgccagaggaatgcaaggcagcttagaaaaattatgacgcaagtgttatatatttactgtagagaagttacatgagacagagaa<br>gccaaaaaagaaaaataatttaaactcatgattgttcacctagaaataatcactagcaatattttggtgcaattttaccccagtgtgtgtctctcttata<br>tacacatgcacacacacatttatagcattggattatactatatgtactctttggaaacctaccttctcactttaaaaatatatacagagcatttttccaa<br>attcataaataacatcctttttaatggctattgttcttccattgtagtaggtgggccatgacaactagctcctacagttgggaaatttaggtggtttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	496	183	NA	intron:SLIT3:NM:003062:4/36
0	chr5	109325006	109325307	1000166	0	-	21141; Ya5ACA1376; RIP_Alu_chr5_109_01	TTTCAGTCTTGGACCATTTCAG	TCTTCGACTCATGTTAGGCAC	SINE	Alu	Ya5	cttcgctatcctggaaacagactctcttaataagtgctgtaattatataattcttaagttccaggctccactagcaagtttgagaataagggaagtatca<br>caaaaaaataaaaagcagaagaggttgcaagacccaaggaaacaccactcagctggttttctatgtatcaagagttatgcaacacaaatgttctcactca<br>gaaatggatcctgatggcattacttttgtactgaattaagttccttcaaaaaacagtttcagtcttggaccatttcagttatgtgagtcaataagtcttt<br>ttgcttaagctaggtcataaggtatatgcaatttatgcatctacattataaggctttcataaataactaaacaaggtaatggat<font color="green"><u>AGAAAGTGCCTAACAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AGAAAGTGCCTAACAT</u></font>gagtcgaagatacaataggcacagttaaatgtgagctctcttcctctcccaactattttcactttattaaatccacacttaa<br>attggacattaaagtttaaattgttattagtaattccagtaaatttcattattaactcagttaattaccatttctcctcttgtagggctctgaaccctct<br>tccatcttcttatgctcaattgcaggagagaggaaggaggaagaatggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaaggagggagggagg<br>aagggagggagggagggagggaaagacacagaaaacctctagccatatgcacaatctctctctcttttacctgtcctattggaaatacggactaggactt<br>ca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	472	154	NA	intergenic
0	chr5	133790522	133790816	1000167	0	+	Ya5ACA1400; pAlu5-133793787; RIP_Alu_chr5_133_01	AAACTGAAAATGCAGGTGCC	TTCCTCTGAAAGGCTGGAAA	SINE	Alu	Ya5	ccaccgcgcccagccttccagctggtccttatttatcctccagcactttcagctgttctgttccgattttgatccatgcaacgcgggggatggggggaca<br>atccaacaggtgaatcctctcccacccccagaaatggctcaaggagacctcctagtgggttacaggaccactgagccatggaccccagggtcacctttct<br>tcccaccacagtcaagctcagcacataacttaaatgcatagtggtcccggaagtgtcaaggagaacaaaatgcccatttttttccctccatacacagcaa<br>aactgttctaatacagccaaatgaactggagaagcagttttattcttgcccttcctgccgaggaaaaactgaaaatgcaggtgccgagaaaat<font color="green"><u>ACTAAAT<br></u></font><font color="red">GGAGGCCAGAGGCGGTGGCTCACGCCTGTATTCCTAGCACTTTGGGAGGCCAAGGTGGGTGGATCGCCTGAGGTCAGGAGTTCGAGACTAGCCTGGCCAA<br>CATGTTGAAACCCCATCTCTACTAAAAATACAAAATTAGCCAGGCATGGTGGCAGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCG<br>CTTGAACCCGGCAGGCGGAGGTTGCAGTGAGCCGAGATTGCGCCATTGCACTTCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAAA</font><font color="green"><u>CCTAA<br>GT</u></font>agagagtgctcttggagcagggtttccagcctttcagaggaaagttggaaaacgctaaaagttttcaaactttgggatcttcagctcttacagaagta<br>tctaaatcccagctacttgggaggatcccttgagcccagaagtccaaggccagcctaggcaatgtggcaagacttgtctctaaaaaaaaaaacaaaacaa<br>acaaacaaacaaacaaaaaaacgtaaattctaggttgggcacggtggctcacgcctgtaatcccagcactttggaagaccaaggcaggtagtttacttga<br>ggtcaggggttcgagaccaacctggccaacatggtgaaaccccctctctactaaaaatacaaaaattagccggacatggtggtgcgttgcctata	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	677	379	NA	intergenic
0	chr6	12772190	12772496	1000168	0	-	52592; Ya5434; RIP_Alu_chr6_012_01	TGATCATGACCTTCGTTGGA	GTCTCTGGGCCTCCAAATCT	SINE	Alu	Ya5	cattacccccttagcaaaacctttcatgcttcccacacctggttatgacaccttttgctataagctgctttagaccattgtcagaactcttcttgggaca<br>tttctcttcagagcatattgtggtaaccaatgaacctgtgatatctcccacgggctgctagcatgttaacaccacatctgatatacacctgtgtctgtca<br>tggtacttatcctagagcttcacaccaggggtctactttttttagattgtatacttccattatatttaaaaaacatgttctagcatatatcactgtcgtg<br>ggttgaatatggtgaagtcctgaacgccgttacttgtgatcatgaccttcgttggaaacagggtttttgcaaatacattcaagtt<font color="green"><u>AAGAAGTCATGCTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGCGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAAGTCATGCTGG</u></font>attagggcgagttataaatccaatgactactgtccttatcatgaggaggagatttggaggcccagagacatgcagggg<br>aagaggccttgtgaagatggaggcagggattggagtgatggagctgcaatgcaagccaaggaccaccatgaattgctggcaaacactagaggctaggaag<br>aggagaggaagtgttcttccctggggccttctgagggcatgtagcccagctgacaccattgggtttgaacttctagcctcttaaattgtgagaataaatt<br>tctgctgttttaagccatccagtttatggcaatttgttatggcagccctaggaaactaatataaccacctctatggaaattaatataaccacatatatag<br>gtggtta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	455	133	NA	intergenic
0	chr6	89480886	89481179	1000169	0	-	Ya5ACA1441; RIP_Alu_chr6_089_01	CAAATGCAATTGGAGTGTTCA	ATTGGGCTAAGCACAGGATG	SINE	Alu	Ya5	tgtacattgattttgtatcctgagactttgctgaagttgcctgtcagcttaaggagattttgggctgagacaatggggttttctagatatacagtcatgt<br>catctgcaaacagggacaatttgacttcttcttttcctaattgaataccctttatttccttctcctggctaattgccctggccagaacttcaacactatg<br>ttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgcttccagtttttgcccattcagtatgatattggctgtgggtt<br>tgtcatagatagctcttattgttttgagatacgtcatttcacaaatgcaattggagtgttcagtttacatttttaaaagtactttt<font color="green"><u>AAAAAGTACTTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAAAG<br>TACTTTTA</u></font>ctttcagcttgagtcactcttcccaggctttatccaggtggcttaggttagctagggctgtgtcccgtgatgtacagtccctttacacaatg<br>ttggagataaaacttggcctcatgtcttgcttcatattcccacagcctctcagagtcctgtggacaatgactagggagacaaaccatgcaagcaacatat<br>tttttaaaaggtcagtttcaataatgacttaattttaagttataatttcatggaacactttcatcactttctttttcacagtattttacccagttattaa<br>ttaatctaagtagtgtatcttcgggaggtaagacagttatttccattttatagatgaggaaatcaagaaaagtcatttagtttatgacttatcc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	849	541	NA	intron:RNGTT:NM:003800:13/16
0	chr6	105328659	105328957	1000170	0	-	Ya5ACA1467; RIP_Alu_chr6_105_01	ATGTGGGGAATGTTTGGGTA	TCCCCCAACTATTTTCATGC	SINE	Alu	Ya5	ttatacatggtgagaatcttgactgctattcttttgatacaatcttggggccagtaaacttaactattctgcgcctttgtgtcctcatttaaaaatgatg<br>atacctgcttgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcagatcacgaggtcaaaagatcaagaccatcctggtca<br>acatggtaaaaccccatctctaactgaaaatacaaaaattaactgggcatggtggcatgtgcttgtagtcccagctacttggtaggctgagggaggagaa<br>tctcttgaacccaggaggtggaggttgtagtgagctgaggttgtgccactgcactccagcctggtgacagggcgagactccgtctc<font color="green"><u>AAAAAAAAAAGAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAAAAAAAGAGA</u></font>aaagatgataacctattttttgtaatgtggtaagaactcagttagctgatatgtgaaaatgcttagttggtgcctggcatatagaaa<br>gtataaatattatatgctattattattacatgaaaatgatattattgtatactaggatttttctgagagcatgaaaatagttgggggaatcacagctata<br>tatattttttgaacttaaaatttatcataaacttttaattctatttaaaattttcaagttaaaaactgttactccttttctgaagattttctccctatat<br>gtttccttttttttttttaaaaaagtctccttatctattctttttaagcatctagatttctcagaaagtaattagagaaggaattaaacacagagctag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1011	700	NA	intron:HACE1:NM:020771:17/24
0	chr6	119638149	119638468	1000171	0	-	Ya5ACA1480; RIP_Alu_chr6_119_01	TCTGTAGCAAAGCACATGAC	GGTTCAAGCAATTCTCCTG	SINE	Alu	Ya5	ccaagtacacagtatcagtactggggtaattacgtcatctccatattgtagatacactgaagctctgagaagctaattccttagccatataggacatgac<br>agaaatgggattacactctgctgtctgtagcaaagcacatgaccgtgtccacatattattcccaaaaccagtgttgccagggttggtaccacaacttttc<br>ttccttttctgtttacttgcttatcagttacatacctaaatctcataaaaatgaaatagcagttgccgggcacagtggctcacgcctgtaatcccagcac<br>tttgggaggccaaggcgagcgaatcacctgaggtcaagagtttgagacgagcctggccaacatggtgaaaccccgtctctactaaaaat<font color="green"><u>AAAAAAATTAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAATTAG</u></font>ctgggtatggtggtgcatgcctgcaatcccagctactcaggaggctgaggcaggagaattgcttgaacc<br>cgggaggcagaggttgcagtgagccaggatcatgccactgcactccagcctgggcaacagggtgagactctgtctcaaaaaaaaaaaatgaactagcagc<br>aaccttctagcccatgaaatcttccacttcttgggcaacaaagaataattaagttatgaaaactaaaccataatcacactcgtaatgcttatgagttaat<br>aatagatttttgcacaagttgtgtttgaaaacatttattcattgcacttaagtctttctcaaaacacaaagctgtccttgaatttttaatatagttcatt<br>aaattgaaaaaattctcatt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	677	346	NA	intron:MAN1A1:NM:005907:5/13
0	chr6	65241884	65242187	1000172	0	+	Ya5ACA1549; RIP_Alu_chr6_065_01	CTCTTTCCCAATGTCTCTCCTT	TGTGCCAGGAACTGTGTTAAG	SINE	Alu	Ya5	tggtacttttcacttatgttcctctttttggctacagtaaaggagaggaaacacatcattcaggaaaatggacagccacattttctttgaagctgagctg<br>attctcctgggtctcttggccatgaggcaatggccaacgggaaatataggtgagaaaacataaatttacaaatatctttctgttttattttacattataa<br>ttaagtcagcagaatactatcaagtttgaattaccaaagatatttttgtgttcacaagttcttataactctttcccaatgtctctccttaatttgacaag<br>ttttctcatgtggtatcatacactgtatttctgcctcatattatactccacaaataggttctacttcatagtttgctctgaatagtaaat<font color="green"><u>GAAAAGAAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>GAAAAGAAAA</u></font>aataccaaatacttaacacagttcctggcacatagaaaacacttcatatcaggtaaatatcatcatgattgtgtcctcggcccaat<br>tcttgctctattaaaaaagtcacttaaacacccaaagccttaacttcctcttttttaaaatggtaaaaggaataaaaaaaaatcatttaatttgtatgat<br>tgttgtattaaaacattactgttgtgatgttttttaagagacaagctctccattgcccaggggctggagtgcaatagcatgttcatagctcactgtaacc<br>tcaaactcctgggctcaagctatcttcccacctcagcctcccaagtagctaaggctacaggtacatgccagcatgctcagttatttttttgaaataactt<br>ttgt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	479	165	NA	intron:EYS:NM:001142800:26/43
0	chr6	67291997	67292326	1000173	0	+	pAlu6-67185333; Ya5ACA1555; RIP_Alu_chr6_067_01	CGGTTGGTTTCAATGTCCTT	TTTGTTGATCCAGTTTTATATGGC	SINE	Alu	Ya5	cacataatcaaaacctcctgcactttagccagttataccgtggatttggatgagacaccaggaaacaacacttgtattcttcgcagtgcccttcatgtat<br>tgatggtactattacatccaggacatttaagtcaatatattcatagtatagtagacctgaaaaatactagagtgattttccatgtaactttctgattttg<br>ttcattaaaaaaaaagagttctctagagatcatttgacttaaggtaatagctggttggtcattcagctgagaacagaatacggatcctggatctctgtaa<br>aagccactattctacaaatagtagttacggttggtttcaatgtcctttaaaaatagcatgataatttttttacctaattctataaat<font color="green"><u>AAATCAAATTGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATCAAATTGAA</u></font>aataaagccatataaaactggatcaacaaatatctatttaaatttactctacttaaa<br>gtaacactagtctgagaatattgttttcttttatttataaataatgcatgactgataattataaataattatctggtgattcagtaagatcatccaaaga<br>ccagtatgaacaaaataatgtaaaactaaaattgcattttctataatttaaagggaaaatctctgacttctgagtttgtattttggtaagctaaatgtgt<br>ctgtttgcttccattcactattgcattgaaatatgcaataacgaagaaaaaaagtatacatttggaacaacaattaaatgcgtttccttaccttgcacga<br>agtaactctaaatatgattaattaaagcca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	446	103	NA	intergenic
0	chr6	74320604	74320924	1000174	0	-	Ya5ACA1561; RIP_Alu_chr6_074_01	TGGATGAACTGTTGAAAAATATCAC	TGAAAAGAGAGTGGGGCAGT	SINE	Alu	Ya5	agtctcagctacttgggaggctgaggtgggaggatcgcttgagccctggaggcagaggttgcagtgagccaagattgagccactgcactccagcctgggt<br>gaaacagccagaccctgtctcaaaacaaacaaatgacaacaacaacaacaaacccatagtgtaacttgaaataatgtaaaaaaaagttattaaaaaacat<br>aatttatggccgggcatggtgactcatgcctgtagtcctagcactttgggaggctgaggcaggaggatcacttgagctcagagcttcaaaaccaccctgg<br>gcaacatagtgagattttgtctctattcggttaaattttttttttaaaaagacacactttttaagaaaatatggatgaactgtt<font color="green"><u>GAAAAATATCACTTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGCAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAAATATCACTTTT</u></font>tttttttttttttgagacagagttttactctggcacccaggctggagtgcagtggcatgatca<br>cagatcattgtagcctgaaactcctggtctcaagcagtcctctcacctcagcctcctgaatagctgggcacacaccaccatgcccagctaattttttaga<br>aaatattttgtagagacaggggattgctatgttgctcaggctggtctcaaactcctggcctcaatcaatcttcctgcctcggcctcccaaactacaggga<br>ttataggcatgagccacctcacccactgccccactctcttttcatactaaatgcatataaagctgggtgcagtggctcaagcctgtaatcccagcactat<br>gggaggctgaggcgggtggat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	673	336	NA	intergenic
0	chr6	95630414	95630723	1000175	0	+	Ya5ACA1583; RIP_Alu_chr6_095_01	TTGAAAAGATAAGCTGCACA	TTTGCATTTCCCTAATGACT	SINE	Alu	Ya5	aatctcaaaccacacctcatactttattcacaaatacctcaaaatgggttatacacttgaatctaaagtgtaaattgataaaaatagtaaaagaaaacat<br>agaaaaaaatctttgtaaccctggattaaacaattttttctttaaatgcaatactaaaagcacaatctataagatgacaaataggctttaattaaaatta<br>aaaacttctgtaaaagttcctctgatcagttgaaaagataagctgcacacagggagaaaatgtgtgcaaattatatatcccacaaaaaaacttgtatgca<br>ggctacataaggaactctctaaactcaacagtaagaaagcaacctaatttaaaaacggacaaaagatttaaacagatacttcagc<font color="green"><u>AAAGAAGATATACAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAGAAGATATACAG</u></font>atagtaaataagtagctgaaaagatactccaactcatcagtcattagggaaatgcaaattaaagtcacaatgagg<br>taccactacttccatattaaaatagcttaaacctaacaaactgacaataccaaatattgctgtattaccagttaagtctcagatacacttttttcttcat<br>tatctaatctgaaatcagtctcaattttcacatccataaaatgtggctgctaattaatgcttgtcctcacttgcttattgtgctgttgtgaaaaacaaaa<br>gcaattatgtagaaaacattttgtaaaatacaaagtaatttactaacataatgaaaaattattattgtggaatttcagtgaagatttgagaaaaggttca<br>aaatgcaaat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	556	229	NA	intergenic
0	chr7	93796280	93796580	1000176	0	+	Ya5NBC212; RIP_Alu_chr7_093_01	CATTTGGCGCAAGTGGTATT	ATCCCAAAGAAACCCACGA	SINE	Alu	Ya5	gataaagggagagctggcacatcagatggcaaaatcaggagcaaggtggggggtaggtgccgcatacttttaaaccaccagatctctcgagaactcactc<br>actatcacaagaatggcaccaagcagatggtgctaaaccattcatgagaaatccaccctcatgatccaaccacctcccaccaggcccctcctacaatact<br>ggagattacaattctacatgagatctgggcagggacaaatatacaaactttatcgattactatacataaagtagataagtcaagtgtgcaagtctggagt<br>acagaagaaagtctaggccagacatgcaaatttgggaattgtccatatacatttggcgcaagtggtatttgaatcccttttcttaggct<font color="green"><u>AAAGAAATACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAACTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAGAAATACA</u></font>aaagcaacatgcaatacatgaattatatttaactgtacttcaatgtccacttaagaaaatagttaacaaaaatatcatgaaataataa<br>atcaaaccttattaaattttaggttcactttgtcgtgggtttctttgggattgtaaatgttagtaaatatttttttttctggatgaaaataacaatcagt<br>ctacaagatatcatagagttccctccttattctttaaacaatttctttgtgaatatacattagattggcttttactattatagtcattgtatcaaagatg<br>accccattctgaattcttacatgaaatgatgttttaatttgacaactaattacagttttcttcacatctcatgatctcagaaaatcaagagacccagtct<br>g	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	502	190	NA	intergenic
0	chr7	140842695	140842958	1000177	0	+	Ya5ACA1667; RIP_Alu_chr7_140_01	TGTCAGTGGCCTGTGAGAAC	TCCTCTGTCATGTCTTCTTTTCC	SINE	Alu	Ya5	cttggggattcggccattctctgcagtgcccagcacttccttggacctgtgggccccagagctctctcaaaaagagctcctaagctctggggccagatgg<br>agcaagctaagcacatgctcctatgaagacctggcccccagtgtcagtcactggagatgtggcctcttgaaattttccccttatagttgggacacagtgt<br>cttttcatttttcccagggatttctcctggggcaagatggaggaggccagctcttgaacttttccccttgctgtcagtggcctgtgagaacctggtatgt<br>gatccatataaggatctttctccttggcatgtctttctttcagctttctttcctttgctttcttcaggagagattaaaagaagctt<font color="green"><u>AAAACCTCTGTAGA<br></u></font><font color="red">TTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGC<br>CAGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCC<br>CGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACCTCTGTAGA</u></font>agggaaaagaagacatgacaga<br>ggaatcattttaaaatcactatgtttctccaaaatatggaattactgcaaaaaaaatggtctaaaatcaaaagaatcctagtttttcacttctggaagtc<br>aatgttgagtctctgtgtttgacctatatatttccccattgtattcaatgtactgatacataaagaaagcatctcagtatgggggtaaggtggtagtggt<br>tcagactcccacagagatttggtgaagacagggagaagatctttcacatacaggctgaaaacaagttcaaaaatcaggtagaggctacgagattgctgtg<br>gtcagtgtggggctgcaggcttgagcctgaggctgctcaaccagttttgctcttgaagtccctg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	432	154	NA	intergenic
0	chr7	39836572	39836869	1000178	0	-	Ya5ACA1696; RIP_Alu_chr7_039_01	TGCAGGTCCATACCTGAGTG	CATAGGTTGGGAGAGGTGGA	SINE	Alu	Ya5	ttttacaaattcaattattcatatttctttaaaatgcttttttgtaaccaactttccattacaaacataaaacaatgacaggttgaccactgctaaattt<br>taagagtaaattatatagaaaactagattcataatgagaaaattaatttcacatgtgagcactttaccttgatatcacaatcacggtcttccttagctga<br>tgtaggctgtaaatcattgatcgcctgtttgccggaaagcctttagagcaaaaatatacaacaaaaatgagtgtgttcatttctttaagaaagtaatttg<br>caggtccatacctgagtgtcacctccaaaaaaacagaaatagaaacaaatctggtgagagactagctatctgtatattaatgttgctt<font color="green"><u>AAGAAAATTAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAA</font><font color="green"><u>AA<br>GAAAATTAAA</u></font>atttggcctctgttgtagattttagttacttatttctatttccacctctcccaacctatgaaatagtcaagacccacgcatagttccgta<br>acaaatcatggcagccaatacactggcatagtctgagaataatttgtcttcacaaattgtatgtcctacaggctgagctgaaaatccaattaattgctga<br>cataatttttaatacctgaactggaacaaacctgataatctaaaacaaggtagaaaaatatagagtctcctcttcttcatttatttctggttcaaagact<br>aatctctgtcactcaaaaatggcagcctgggttcttcagcacggaaatcacttaagaaggcctcagtgcgggccaggtgcggtggctcacgcctgtaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	472	162	NA	intergenic
0	chr7	42614186	42614187	1000179	0	-	Ya5ACA1702; pAlu7-42354424;1104685592768; RIP_Alu_chr7_042_01	TCCCCCATCTCTTTTTCCTT;NA	TGGATAAAGCTGCAACACCA;NA	SINE	Alu	Ya5	tactttatctgtctcatgacttttaaaacgtgagctgttgattttcctacgtaacttgtgtgtgtgtggaaatctccttagatttacacaaaggtgaata<br>cttctaaagacaattatgactttcctctgccagttgacaactcgtctaggattatttaaactaaattccattctcagttttttgggccatccaaatacta<br>tggaattgaggcagcaaacaaacacgagatctaacctataaatacagtttctcagagtctattttcccctttcactcagtgccaggatttgaaaacttgc<br>aattctcccccatctctttttcctttttcccattttcttgtaggaggatggggagagtttatttctagttcatacttatgctt<font color="green"><u>AAGATAAAGACTTTTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATAAAGACTTTTGG</u></font>tgttgcagctttatccagggaggtctcctgttagacactgtcacttaaagggagctgt<br>gctttattttctgacctctacaccttacaggctcataacagcttaaattgttaagttctgaaaatattctcaaggtaaaaatactgaacgaaattctatg<br>tttgcctctctatgttctcatcttcccttagattttggcctgagcaaacattactttcttgctagctcaccaaatcaatcattcagcaaatatttgtgaa<br>gcccctacaatcttccaactactattctatgtgttgggaacacagcagtgtaaaaaacagacaataatccctactctcaaggaatttatctcagaacggt<br>tgagtggtggttttcataatatttt	Other;Venter	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	55;NA	454;NA	112;NA	NA;NA	intergenic
0	chr8	64307429	64307669	1000180	0	-	Ya5ACA1770; RIP_Alu_chr8_064_01	CCCCAAGTAGCCTGTCAAAA	CAGGCAGCATCACTACCTGA	SINE	Alu	Ya5	gtattgaaactctaaaagtaatcacgaatctgtctatttatttttccagttgtgacaattattgctttgtttaatttcaggtctctgtcaatgttttcat<br>aaattgacattttcatcattaagaaatttctttctttctttctgttattattccctgtcctgagtctaatttgactggttttttacagccactccagcta<br>tccctacacttcatgttttcatgctacatttttccattctttttttaacctatctgtgtctttacataatagaaactaaccctagaataaatactactct<br>aatctgccctaatatatcttaatagcaagcctcaaaaaaaatcaagctaatccccaagtagcctgtcaaaataaaattcaaatatttttt<font color="green"><u>AAAGGAAGAC<br></u></font><font color="red">GATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTT<br>GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACT<br>CCGTCTCAAAAAAAAAAAAAAAAAAAGAAAAAAAAAGAAAAG</font><font color="green"><u>AAAGGAAGAC</u></font>aacaaccaggaagtcaagcacttaaatgccaactaaaaattaccagac<br>atgctaagcatcaagaaatgtgatctctaattaggagaaaagtcagtcaacaaaaatagacccaggaaatgatggtaataataaaattaatgtataagga<br>caaattcaggtagtgatgctgcctgtataggctgtgctagcctgatcagccacattgttttatttagtcttatctcagtatggactcttcccaaaagtat<br>tcacatggattatataaatgccccatctggctgtagcaacgcctttccagagcccacagcctcacagagatgtgtctttaacacaccagtcagtcatccc<br>ccaggtattcaaccaaatagttatgctgttagtcacagccca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	473	222	NA	intergenic
0	chr8	87965214	87965529	1000181	0	+	Ya5ACA1793; RIP_Alu_chr8_087_01	TTTTTCCAAAAATGCTGGGT	GTTCATTGACTGGGTGGGTT	SINE	Alu	Ya5	agctgagaagagaagacaagggtaatgagaatggattcttggccaacgtcaatgcttaacggaagaagatagcattcaatggagcagtctaataatggga<br>aagcaagaaaggagagaatggtgtcacaaaaacccagtaagaagaaacttcagtatcaaacatcacacagggcgtagtaagatgaagactgaaaggaggt<br>tatttgactagaatctaaaaggtctctgatgatcttaatgaaaaaaatttcaaaaaatatgaagaagattaattatagtagatggaagagtaaatttggg<br>ttggggaaatagaaaagataaacgtagattattttttccaaaaatgctgggtataaagagaagttattttgataatttgttgtaaaaca<font color="green"><u>TTGCCCCTTTC<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAACAAAACAAAACAAA<br>ACAAAACAAAAAAACC</font><font color="green"><u>TTGCCCCTTTC</u></font>cgtttcatgtgtccccaccactcccccactgcccccattttctcttctcaggtaatacagttctattttaaca<br>tcttaacccacccagtcaatgaacagggacaatctaggcccacttgggaattgtctctgtcagtgtgccagcatttattaatagaaaactttgactgggc<br>attattcttttgcctctgaaggtttatttagtcaccctttttgggtgccttatgtctatctaatattatattatttaaagaaaaattacctttgagattt<br>tagaaaacaaaaactagttgaaaaatgggtagatacactatgaaccattaacataggtatgtttagtgacctcactagataggtttagacttattttaaa<br>acatactcctccctgt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	492	165	NA	intron:CNBD1:NM:173538:1/11
0	chr8	99426012	99426321	1000182	0	+	Ya5ACA1805; RIP_Alu_chr8_099_01	AAAAGGCAATACATGGCTGG	TGATGGGATTAGCACCACAA	SINE	Alu	Ya5	gcaaactatcatctgacaagtccttaggaaggtactgttttcatctgaagataaattttacctaaattctaccatgtttttcaatgctgcagtcctcctc<br>acctggaatccttccatccttggctccctgtatctgcaatgcaaaagaaatacaaacatttacctatagcaaaactctgagaatctccacaaagtcaggc<br>tgccaggaaagcctaagagcctgggaaggagaaggaggggacaatacattctgcatggtttaggcatccttgctgcccagtgccttttaatccccttggc<br>aaatggcctgggtttattttttagagtgggttgggcaaactcagatggaaaaggcaatacatggctggagcacaggagccatgagt<font color="green"><u>AGAAAATATGGGAC<br></u></font><font color="red">CCTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAAGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AGAAAATATGGGAC</u></font>tctccaaattctcaccttgtggtgctaatcccatcacctatagtaatgttgcaaggcaggtgaaagcttgaattct<br>atctccaaggttataaaggaggtataaaataaaacatctatcaaatattttgagacccttagaagcacagaatgttatagctgaaaatcctaggtgtctc<br>tgagaatgtggaaataggccattttagcttaaaacaaaacaaaagattgcaatctactgagcctgaagtggtttgagatctatgtatgcttaatctagca<br>atgtatgtcccaaatactgcaggtcctcttgactttaatcatggaaagatgatcccatattcattgagaagaaataaataaagcagcctctttaacctgc<br>ctttcccaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	412	88	NA	intergenic
0	chr8	97657824	97658122	1000183	0	-	Ya5ACA1806; RIP_Alu_chr8_097_01	TCAATGGTACAACCAAACAACA	CCCTACTGCCTTCCAACTTTT	SINE	Alu	Ya5	gttccatcaagcaagaaagcaagatgccagcaacagatatggaaagttcagtcttctctaggaaaatagctcatttgtgtacaagtattaaataatgagt<br>tgcaccaccgttccatccacctagccagcacaatcactgggatttctctgatgtattaataaactgcagaggattaaaagtctactacatctcaatacat<br>tcttgggacaactgagaaatgtaaatatgggttgaatattagaaatgtattcaccattaactttcttaggtgagattgtgttttctcctttttcccaggg<br>gataaatgctgaatcctcaggggtcaagtatcctgatcactgaaatttactgtcaatggtacaaccaaacaacaaaaaaaagctgtatat<font color="green"><u>AAAGAGAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAGAGAATA</u></font>ataaagcaaatctggtaaaaaaaaacaaaacaaaacaaaaacaaactaccaattattgaacttatgtggagaatattgtcctatgctttca<br>agttctctgtgtatctgcaaattcataatttaaaagttggaaggcagtagggtaactccagctgaaaaaacttcaggtgacaccagagctggtattaatc<br>actaatgggaccagaaagtaccgccttcataccaggtacaagaatgaggtgaaatctgctaaaaattatactagcctgtagttagctgacttaaataaat<br>tgggcccacaaaagactgcatgatgtatttgtgtgtggggatcggggagggtggtaaccacataatattctaggagaaaagacagctatgaacttgaca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	500	191	NA	intron:SDC2:NM:002998:1/5
0	chr1	70540716	70541022	1000184	0	+	Ya5ACA589; RIP_Alu_chr1_070_01	CATTGCTTGAGCATGTGTCC	TGAAGCTTGGAGCCCAAATA	SINE	Alu	Ya5	tcacagacaaggcaaagtgagttggtattcttggtttccctagacaggaaaaacagaaataaaacatgcctcacatgctgcatgaaaataataactaggg<br>ttacatagaatttatcatcaaaattaataaatctaagaatgaaagtgacactactgacaattctgccaggaaaacaggggtgagccagagcaaagaggga<br>agtatggttgccttatgtatcaagaagccctaaaaaagtaactcatcaactcacacaggggcggcgggggggcggggggctgcctgttgctttatagctg<br>aattctagcttttagtccactcccagaagctagaattcagctttactattaaataacacctatcattgcttgagcatgtgtcct<font color="green"><u>AAAAGAAAATAGTATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAGAAAATAGTATT</u></font>aaaagggactcttcccctatctctataagatgtgggctcctgataataccaaaaaggaacagatcattttatatgta<br>agtgcactatttgggctccaagcttcagctatcagggaatgttatgctctacataaaagaagaaatgggctaaaacagtcttctgcctccattccctgct<br>tgcccatcataggtgaaagtggtagtgggttgccaggagtggagatgaaaaggtgagtaaagagatgcacagaaagacagataaagaaagacaaagacag<br>actgacatggtgacctttgagattttagatctagcgatatgtaaaattagttatagaaacttcccagttatataaattaatacagcctatttttatttca<br>ttcgtgt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	464	141	NA	intron:ANKRD13C:NM:030816:6/13
0	chr1	223411037	223411339	1000185	0	-	Ya5ACA637; RIP_Alu_chr1_221_01	AAATGCCCCCTACAAAGACA	TGTGTGTCCCTGCATCTCTC	SINE	Alu	Ya5	aactaaaatttaagcgtaagatagctaatgtaaccttgttgtacccattatgattgtcttcatcataccacttttttggaattagttgagacccactttg<br>tggcccaatattgtgttaaggactataaatcttttaagtgtatacttggagagatgttaattctctagatgttgccaagaaaatctttcctaccacaagg<br>gtcctaggacttcagctgttggataattagtttgttttctaaacaaaaagatttggaaaattattttaaaggaaagagggagaaaactgcctttttccct<br>taaaagaaaaaaaatgccccctacaaagacatattcactttttaatccccagaatctgaatattatttaatatggcaaaagaggtgatt<font color="green"><u>AAGAATTTTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTCGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGAATTTTAA</u></font>gaggagtttatcctagagtatccagatgtaaataaaatcacatgtatcctaataagagacagagagatgcagggacacacagagga<br>gtaggtgatgtgacagtgtgtctacctttgagtcattgtgtccaagtgactgccatacactgattgactagagctgaggttatgttactttagtgactat<br>ttgaaaatgttacatttcctgtaatttgacggaacaataacagattagagtgctgtggtcgtaagccaggaaatgcaggcaaccaccagaagctggagga<br>ggcaagaaatggaatctgcccaagagtctctggagagtaagcaaccctgcccacaacctggatgtcagacttctggccgcaggtcctgtgaggaaataca<br>ttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	484	170	NA	intron:DNAH14:NM:001373:33/84
0	chr1	78316179	78316483	1000186	0	+	Ya5ACA645; RIP_Alu_chr1_078_01	TGAGCAGGAACTTTGCATTC	CAGATCAGTTCTTCACGGGAG	SINE	Alu	Ya5	taaggatttcattgtacaatgaaaaacatcattaagattatatctactgaatcagtcattttccttacgttgtgtgataccttgttacgagtttactttc<br>caaatcttttttgatttagtttagtttgtccgtcagagagtgttatattttaaaaaaaagttaaatgctgcctttcactgcctgttgtgtagcgtactta<br>gattctggaagcaaatatttcttagaggagcattgataatatggccacttcactgttagttttattgttttcatatgagtatgagtgagggtatgaaagc<br>tcacagtagcttcttaaggttccttctgacttaaatgttcattatcttttgatgagtgaatgagcaggaactttgcattctttagaaa<font color="green"><u>CTAGTGTATCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAAAC</font><font color="green"><u>CTAGTGTATCAC</u></font>tttcttattttgcagttcaaaatataaaatctttgaggatgcttgaatttctagacctttatcatatacttagaggtatattt<br>gctgatagttgtgcattgatactgtgatagcttcttattctcccgtgaagaactgatctgaagtcatggagctttagttacctgctgctcttattccacc<br>ttgcagtggctatcacattcctacaggttttcaacacagcttcccatgaagttccattcactgaaagatatagctggctccattccttacagaaaaaaga<br>aactaatgccctgcttgccaacttttggctgtctagaatggaatgttattctgcacgggaggaagcacgatggaaaagggttcttctacctgcaggaaat<br>ctaat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	183	NA	intron:GIPC2:NM:017655:1/6
0	chr1	156978671	156978977	1000187	0	+	pAlu1-155489820; Ya5ACA720; RIP_Alu_chr1_155_01	CCCAGAGGCATTGAACATCT	TCTCTGTCACATTCCCACCA	SINE	Alu	Ya5	agcttaacttacttttcaagcaaaagtaataacatttataaatcatacttatagtcttagaaaaacaagacctataaattaaaatgatagacacaaaact<br>tagtactgttgttattcatattaaaaatcattaaagagatacttcactttgaaaatacatgccaaaatgtctttaaataatttcgttaaaaaaagaaaaa<br>gtgcgtggtaattttaaaaaactgatttgttagcattttaaacttaaggagatgatgagatttctttgaagaggtgtgtgtgaactccattagctcccag<br>aggcattgaacatcttttgagaacagaggattttcttggtggcgtttttcatatctttgttcctcagactatagattactgggtt<font color="green"><u>GAAAAGTAGGGCAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAG</font><font color="green"><u>GAAAAGTAGGGCAAG</u></font>gacagcaaacatcagtgcaatggccttgtccagtaatggtgggaatgtgacagagaagcgcagatacatgagtgacac<br>actgccaaaaaacagcaagaaaatagcaatgtgggctgcacatgtggagaaagccttctgacggctctcaccagagggaatcctcaggatcaccgtgatg<br>attcttaaatagaaaagggtgatgacagagacagaggtcagaatggaaatagcacggatcacatcttcaaccagaattatttacgtatctgtgcaggcca<br>actgcagcacaggttcaaagtcacaaaagagttgatgaatttggttggcgccacagaatggaagagtggaaatgcacacaatctctggcagtaacatgag<br>gaagcca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	483	161	NA	intergenic
0	chr1	167426661	167426973	1000188	0	-	Ya5ACA733; pAlu1-165855970; RIP_Alu_chr1_165_01	CCTTGATTGCCAACACTGAA	GAAATTGGAGATTTGGGGGT	SINE	Alu	Ya5	cttatttgggacacctagctttgcggagcagatggttttcccagtaaactcttagattctataggtatcacatttcagggtcaagaattacgcatatcct<br>cagtataaactctgtaaagactttttttctcttgtttgatggaactcaaaaatggagcaataatagttatcaacaagcaatgagtctgagtcctcaggct<br>ttaatggcaaccaacaaacccatgctccttattgcagaggaagagtgcattgttgattcgctttatatccccaaatagaaaacacgttaagggtaatcct<br>gggaaattatgcttacttcaaaccttgattgccaacactgaagtgtctaaatagcacttcaccatttttctggttgttttctta<font color="green"><u>GAAACAGTTCACTTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>GAAACAGTTCACTTGC</u></font>ttccttcctgtgataaatgccatatttattttagtatgagtcaacctacactttttttatattgcctctct<br>ccccagacccccaaatctccaatttctcacaagtgaatttaggcaaactaaagaagacatctctgttccgtgagtattaaaatcaaacatttttaaatgt<br>aagttataaaaataacactttcattgttttcttcctaattactaaagtagtccatgtttattacccctattccacctccaaaaaaaaaagaagaaaaatt<br>atggaaaagagtcaagacctaatagactaaaaattttaaaactattcttgtttgcctacttctcagaaataaacactgtaaaataaacattttgacctga<br>cctcaaaccattg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	500	175	NA	intron:NME7:NM:013330:10/12
0	chr1	184033440	184033749	1000189	0	+	Ya5ACA745; RIP_Alu_chr1_182_01	AAGGTTTTGTTCCTGTCATAATGTT	TGGTCCTAGAAGAAATGCACAA	SINE	Alu	Ya5	taaaagttgtctctttgttttttggttggttgtttttgagactgggtcttgctctgttgcccaggatatagtacagaggcacaaatctcagatcaatgta<br>acctcaaacctctaggcttaagcagtctttctgcctcagctttctgattagctgggacaggtgtgtgctaccatatctggctaattaaaaacaatttatt<br>tttgtagagatgcagtctcactatattgcccaggctggtcttgaactcctggcctcaagcagttctcctaccttggccttccaaagtgctgagattcaaa<br>gctaatattgatatgtaaggttttgttcctgtcataatgttaattgttacctagttgttttatagtctcatttatgcaattgctttat<font color="green"><u>AAGACTTGTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGACTTGTTTT</u></font>atacttttatgttctttttataatggtgggtattgacctttaatttcaatgtttagatttcttttgtgcatttcttct<br>aggaccagtctggtggtgatgagtttctttagcatttactcgtctgggaaagactttacttctccttcatttgtgaagcctagtttagcagaatgcaaca<br>ttcatggtggacagtttttttctttaagaattatggaaataagaccctaatctcttctacctcataaagtgtctgcttagaagtccagtgttagtctgat<br>agagtttcctttataggcaattagatgcttttctcttgctgactttaggctgatgattgtatgtcttgcttaagtacttctttcaatatattttcctgaa<br>gttctttgag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	491	169	NA	intron:HMCN1:NM:031935:1/107
0	chr1	115598423	115598695	1000190	0	+	Ya5ACA974; pAlu1-114896896; RIP_Alu_chr1_115_01	GCCCAGTCTAAGACGTTTTGTT	TGCAGGCACCTCTTTCTTTT	SINE	Alu	Ya5	tacatggactttcaaatacactgattgctatgacctaaatgttgttgttccctcaaaattcatatgttggaacttaatttctaatgtgatagtattaata<br>ggtaaggcttttaggtggtgattaagtgataaaggcagagccccatgaataggattaataccattatgaaagtgagggacactgtttgccctttctgcca<br>tgtaaggacacatagaagtcaccatctatgaggaacaggtccttcccagacaccagatctgctggcaccttgatcttgaacttcctccagaactgtgaac<br>aataaattctgttgtttataagttgcccagtctaagacgttttgttatagcagcaggaacagactaagacattatcatattctatgttt<font color="green"><u>AAAAGAAAGAG<br></u></font><font color="red">GTGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGG<br>CGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCC<br>ACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAAAGAG</u></font>gtgcctgcatgtgtac<br>ttatttaataaatacttttatatagtagacataaattacacatactatatattaatatatggtacaatgtattttatttgaagaatgaaagaacattcct<br>ctgaaaatgatatactgaaaggttcagaataaaactagcaaattattggggattttcagtgaaatgcaagaagacgtagtttgtataaaaaagtagcaga<br>aaattctaaggagacaacaggctgggatgaaaaatcagcaggctgagaaacgaaataaagagcatagaatcaatttggaggggctgagataattttttta<br>attatggaaaattaatatacaatagtggaatttaaatccatattggaaacaataagaagatgattttatagtt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	368	85	NA	intergenic
0	chr1	76872964	76873237	1000191	0	-	Ya5ACA975; RIP_Alu_chr1_076_01	CCAGAGGCAGACCAACATTT	TAAAGCCAGAGGGAAAAGGC	SINE	Alu	Ya5	caaagatgactctcattttgagatcatttccaaatatggatctcttatagagttggatagataactataagctgatttgttaaaagaaaaattatccaaa<br>tttgacattcaactgcaagagtgttgagatttgcagaaagaaaataagaggagagaggaaagtaaggaataaggaaggaagggaggaaagaaggaagact<br>tctttgttctatgcagcttatgtgctaacccaactttgttaatatgtctgacacagcaaaaaaagaaatatatgtcagcatcagatagttaatatggaca<br>aaacaaattccagaggcagaccaacattttctcttgttattgtttatagtagtattctggatatgtttccgacttggatatcaagtatatt<font color="green"><u>AAAAATCCC<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT<br>AGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGA<br>TCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATCCC</u></font>ataccgccttttccctc<br>tggctttattaacatatccttacttgtcctgttgtaaaacaaactgaaatatgccaatagctctttgccattttgtaagctttattctaagacacaatgc<br>ttataaataaagcactataatgccataaaaactctcaacaaacgtacaactgtgcatttacactttcttctaaaaatagatgaagattatgggttttaaa<br>atgaatgagaaactacagaaaaaaaatcatgggaactcaggaaaataagtgaagcaaaaaatgtaccatatgtaacagaaatgggtatttactcagtaac<br>agtgacaacaaagctaaacacaaggaaattagtactttgtagattaggtaacaaaaagctataaaattgcctcg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	399	116	NA	intergenic
0	chr2	36809178	36809480	1000192	0	+	Ya5NBC5; RIP_Alu_chr2_036_01	TAGGATATTACTGTACAAAGCCGTAGATTT	GTTTTAAGCTAAGCGTTATTACAAAAGAGT	SINE	Alu	Ya5	atgttggccacactcgtctcaaactcctgacctcaggcgatccacccacccctgcctcccaaagtgctgggattacaggcgtgagccaccacgtccagcc<br>tgtattttctatcctatatttttatcattattttagagtatactccttcacttacttaaaaaaaagttataacatttaaccaaaagattttaaaagtaaa<br>aaattttaaaatctcaaaaatagaaaaaagcttatggaataaggatataaggaaagacaatatttttgtacagctgtaaaatgtgtatgttttaagctaa<br>gcgttattacaaaagagtcaaacagttaaaaaattaaaaagtttataaggtgaaaaagatacagtaagctaagattaatattatatt<font color="green"><u>AAAGAAAAAATAT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAG<br>AAA</font><font color="green"><u>AAAGAAAAAATAT</u></font>tttttataaatttagtgtagatgacgtatacagtggttataaaatctacggctttgtacagtaatatcctaggccttcacactc<br>actcacccctcactcactgactcacccagagcaacttccagtcccgcaagctccattcatgctaagtgtcctctaaaggtgtaccactttttatctttta<br>tactgtatttttactataccttttttatgtttagatatatttcgatacataaatatttatcagttgttaacaattgtttacagtattcagtacagtaaca<br>tgctgtacaggtttttgacctaagaggcaatagaccatatcatacagcctaggtttgtagtagaccatctaggtttgtgtaagtacactctacaatatcg<br>gca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	476	163	NA	intron:VIT:NM:053276:2/16
0	chr2	95723451	95723761	1000193	0	-	Ya5NBC324; RIP_Alu_chr2_095_01	TGTCTCAAGGGTCATCCTCA	TCCCCATCCCTAACTCTTTCTT	SINE	Alu	Ya5	gagtaaatgggttacctttccctggagccttctcaagccactatggcaggagatttccactcaaacccttcatattagaaggttcctgagacacccacat<br>ttcagttctgtggaaagtaccagggtcaaactactggaagacctaggaccccggtcacacaccccacctaccttacacttcctgcactgtcctgggccat<br>ctctccctcctgaggatctccacagatggctcaattccatagggtcttgttgatcttacatcaaccagtgtagaaacttctgtctctctctctccccatc<br>cctaactctttctttcacattttctcattcatactcaccttcctttaaaataattccatgggtcttttttcaaagttaaagagactttt<font color="green"><u>AAGAATCTTAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAATCTTAG</u></font>tttgagtctgtgacaaaataggggaaatatcatccctgaggatgacccttgagacagttataaatgactataataaaa<br>taaaaaatttggaataagaagggattcccaactgctactctcctagctaggagtcgaaacaggcccttcacaaagggagcgacagggaggacggcagtga<br>ggggcagtgaggaaagtggggagttgaataagccttgccagattgggaaatgagacccacagggaaacacgactccaatccctcctcagccataaagcct<br>tgttcccacaacctccccagcagcacttcccacacacatgtgtaaacaacagaaagggctccagggagccaggctctgagcaggagtgggagagagagat<br>cagtctgaact	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	486	164	NA	intergenic
0	chr2	213282932	213283222	1000194	0	+	238248; Ya5ACA796; pAlu2-213538608; RIP_Alu_chr2_213_01	TGTCAGTGGAGGTGTTGGAG	CCTTTCCCATTTGCATCAGT	SINE	Alu	Ya5	cttccataacatcctggcaatagtggcaggcagggagatgttcatattactgagcacggttttgacttgatattagaatatatatttatttgctcagctt<br>ttttttttctcatccctaataaagtttaaattaaattgaagattgttgagtttgaaaatacaggaaggagagactgtcatggattacccattgatagagg<br>aatgtccctgaaaggtgacagcaccagaagagttctttctcatgaataaaagaaaaggaaacatggtagttgagatgtaaatatgtctgtcagtggaggt<br>gttggagaaagggacgagaatcttataaaggaatcccagctgataacctctctcttcagtgaagtaggaaataagaatgtgtgtc<font color="green"><u>AAAATAGCAAGGCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAATCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAAATAGCA<br>AGGCCC</u></font>agggcctcaaaagaatgaggaaggtcaataaggtctactgatgcaaatgggaaaggaagccgatttgagacattcaaacaggatttagagtgcc<br>accagatcaagtcttcatttagttaaccatttgataaatatattgagtccaacacagtatcaggcactatatttatttccagcatcacaaagacaaccag<br>gcatcaacttgttaaacatccccaggatttgaagtggaggagctgactgtgcaggatccacagtatccaaacatcccagctacctcactttctttcttct<br>agctctggtcagaaataaggctatggcaagtgacctttccttgctcagggcggcttcctatattttatgaaagttccatgccagggatttt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	475	184	NA	intergenic
0	chr2	115388897	115389198	1000195	0	+	Ya5ACA815; RIP_Alu_chr2_115_01	TGACACCCATAGGCTCCAA	GCAACCTCTGCTCTTTTTGTTT	SINE	Alu	Ya5	gccaaactaagcttcataagcaaaggagaaataaaattctttttgaataagcacatgcttacggaatttattaccaccacctgcccttacaagaagccct<br>taagggagtgctatacatggaaatgaaagaccattacttgtcaccacaaaaagaagtatacagcccactagactataaagctactgtacaataaagtcta<br>cacaacaaccagctagcaacagaaagacaggatcaaatcctcacatatcaacattaaccttaaacccaaatgggctaactgctccacttaaagggcaaag<br>agtggcaaacaggataataaaacaagacccaactgtatgctatcttcaagagacccatctcccatgcaatgacacccataggctccaaat<font color="green"><u>AAAGAAATGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTGCACGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACCCCAGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAATAAAAAAT<br>AA</font><font color="green"><u>AAAGAAATGG</u></font>agaaatatctatcaagaaaatggaaaacaaaaagagcagaggttgctattcttatttcagacaaaacagactttaagccaaaaatgat<br>caaaaaagacaaagaagagcattacataatgataaagggtttaatttgacaagaagttttaactattctaaatatttgggtacccagctctggagtactc<br>agatttataaaacaagttcttgaagacttagttaactacactgtaacagtaggagacttcaacactccactgacagtgttagatatcatcaggcataaaa<br>tgaataaagacatttaagacctcaatgcaacacttcacaacatggaactaacagacatctacagaacaatccatccaacagtaacataatatacattctc<br>at	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	389	78	NA	intron:DPP10:NM:020868:1/26
0	chr2	240607628	240607934	1000196	0	+	Ya5ACA825; 238271; RIP_Alu_chr2_240_01	GAAGACAGGGTTGAAGAATGC	AGGAGCTGATGTCGTAGCGT	SINE	Alu	Ya5	gaggcctcccctaatcttcctacccagcctctccccacagcctccttcctcagagcagccaccactcacttggggcaagacattcctgtttccacatcga<br>gtcttcatccctctactaaaacacaggcttccctccctgtggcgcccttagctcccagaatgggtctggcacacagcagacatgcactaaatatttaatg<br>aatacgttaacccagttccaatttgccccaagaatactgagatgggagcaagctgcactttttttttctaaatgggaaataggttactatagcaccaaaa<br>aaagcaaggctttatttaacaagtaaaatgtttctttttcattttaagaaatgagtagtcagaagacagggttgaagaatgcttt<font color="green"><u>AAAAAGAACGTGGAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAGAACGTGGAG</u></font>taagcctggatgtcagtgtgaagtccacgctacgacatcagctcctggattggctcctggtaaagaacctcaaaccag<br>aaacagcagaccacattgttttcttaggagtaacactaaccaagatcagggtttacgttcatataagaaaaaaagaagcactaataaaatgttttcaact<br>ttttcaaagcaagacaataactccaccaccgtacaactgtgtagatacgtgtcatggacacacactgcatccgtggagacctgaaggagcataggcagcg<br>gctcctagctcagctctgagaagaagcctgtgagccggccactcccagtgaaaaccacattcttgttctcacggctcagaccccatgaagccaaccctag<br>tggcggc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	407	85	NA	intron:NDUFA10:NM:004544:3/10
0	chr2	77830293	77830599	1000197	0	+	Ya5ACA839; RIP_Alu_chr2_077_01	TGCGTATGATACACCCTCACT	CTCACACATCATATGGGCAAA	SINE	Alu	Ya5	agggatagcgttaggagaaatacctaatgtaaacgatgagttaatgggtgcagcataccaacatggcacatgcatacctacataacaaatctgcatgttg<br>tgcacatgtaccctagaacttaaagtgtaataataataataataataaaattacagtggttatctttatgtggcaggattatagatgagccttatattct<br>taattttctgcattattcatattttcggtgaagaacatgtattattttcataatcagtaaaataataaaggttattaaaaaacagtaaaaaaaggtatta<br>atgcgtatgatacaccctcactatggagtacaatgaggttagaaggaacaaatttgaaaagtcacagcagatctgattcaaat<font color="green"><u>AAGAGTCCAAAATTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAGTCCAAAATTCCT</u></font>tccttctttttatttaacaagagtgaacaacagaagtatctttttcaaatatcatttgcccatatatgtgtgagtc<br>tgtttctggaatgttcattctgttctactgatctattttacagaactcgacatgctaccacactgccttgtttaccgtgactttataataactattgaca<br>tcacacagtgtgagctctccaactttgttctatgttttcaaagttgtttttgttattctaggtccactgtatttctatatggattttagaattcatcaat<br>taaaaaaatgtatctgctaaaatttttatttggattacattgaacttacagaaaactttggagaaggaacaacttaatattggatcttcttacccatgaa<br>cataata	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	498	174	NA	intergenic
0	chr2	87180173	87180493	1000198	0	+	Ya5ACA855; RIP_Alu_chr2_087_01	CCATGAGTGTGGGTTCTGTCT	AACCTCTATGCACTGAAAGAAAA	SINE	Alu	Ya5	tataacatgaattaatatttgcctcaatttacagcaaaatgaagaccttctaaaattgtaactccatttatttttcccttccaacttccatgctattttt<br>ataatacattttagtatatgctatgactcccaaaaacattgttattgctattattatgctacattgtaaatattcatttaaatttacccactggaataca<br>actttgtgtttcttattacttcctgaatctataaactaccacttaataccatttcatttttgtttcaaaggtaaccatgagtgtgggttctgtcttagtg<br>aattacttcagttttcagtgatctaaaaaggtttttgtattatcttcacttgtgaagttttaactgtatatgggattgaagatt<font color="green"><u>AGAAATTATTTTCTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGAAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGATAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATTATTTTCTTT</u></font>cagtgcatagaggttataattctattgtcttttcacttacattgtttcatttagcaagttaag<br>agtctaaaggtgttcttttaaaggaaacgtgtttttcccctgactgtccatgatatttttctcttttactctatgtttctgcaattcctctctgtgtcat<br>caggttttgaattgctttctgtgtttttctgctttggattcatgtttccctttcaattaatagtttaattcatttagaagcatatcttccttgttcttgc<br>tctactttcttgagcccgtaattatatgtaagacttttcattaacctttgcactctacaatattttctatccttttctttactatgtttgattctacata<br>ttttattctaacatacctgct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	478	141	NA	intergenic
0	chr2	99119413	99119732	1000199	0	+	Ya5ACA862; 1175; pAlu2-99357450; RIP_Alu_chr2_099_01	TCAGAGTAATGCACACAGATGCT	TGCATTAAGTGCTCCAGAAGG	SINE	Alu	Ya5	tatattatttactattattactaattcctctcactgagtcaacttatttaattggctatcaagtcctactgctcttttcactaaaaattatctcagttac<br>atttcttccatccctactatcactgttttagttcatgctttcagactgtagcagtcacatgtattcactttatatgtaaacttataaatagctagaataa<br>gaatgaaccagaaatatgtttctggggataaaaagatgtaaaacaaatagaatcttacaatttcaaccctaaatgaatctaggaaagtccagaacaaata<br>aatcagaaattacaccacagcatgattactgctacatcagagtaatgcacacagatgctaaggtaacactgagaaagaagctac<font color="green"><u>AAAAAAAGTATTTCTG<br></u></font><font color="red">CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAGTATTTCTG</u></font>acttctacttcttcaaaaaagacttaggatctactcttcattccaaaagaactatgaacatatc<br>ccttctggagcacttaatgcattatattacttttatgggatgtccacagccatggctactttaacgtgtctaaaacagacttcctttttttttttttttt<br>tgagacagtcgtgctctgtcacccaggctggagtgcagtggtatgatctcggctcactggaacctccacctcccaggttcaagcaattccctgcctcagc<br>ctcccaagtagctgggattacaggcacctgccaccatgcccagctaactttgtatttttagtagagatggggtttcaccatcttggccaggctggtgtta<br>aactcctgacctcatgatcc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	485	149	NA	intron:TSGA10:NM:182911:1/20
0	chr2	35944027	35944331	1000200	0	+	Ya5ACA866; RIP_Alu_chr2_036_02	GAAAACCACACCAAATTGCAT	CCGCTCTGTAGAAAATGCGT	SINE	Alu	Ya5	ttctagaaataaaatgtttaatacctgaaatgaacctatcactagaaggaattaacagcagctctgacactgcagaaagaaaggttgtgaaattgaagat<br>acccaaagagagcactgagaaaaagaaaagaaagacttttaaaaagaggaatctcagggacttgtgagttaacagtaagccacataacaaacatataatt<br>ggaataccagaaaaaaaggaaagaaaaatatgtttagaaatttaaaattctacagttgtccaaaatttttcaaatttggtgaaaactataaaatcacaag<br>attcaagaaaaatcaaagaacagcagagaacatgaacagaaagaaaaccacaccaaattgcattataaccaaattactgaaaact<font color="green"><u>AGAAATAAAGAGAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AGAAATAAAGAGAAA</u></font>aatcttaaaggcatatggagaaacaaagacgcattttctacagagcggaaaaaaatgaccacagacacatcaaaaactca<br>gtgagccagagtcagtgaaatggaatctttaaaatgatgaaataaaaaacaactgccaactagaatacagtcagtagaaatatcttacaaaaattaagcg<br>atgaagacatttcaaacaaacaaatcagaaagaatgttttgccagcaagtgtgcactaaaataaatgttgaaggaagtgctgcagatacaataaaaatga<br>taccagttggaaaagagataaccaaaaaaagcaccaaaaattataaatataaaagcatctttattttattttttaaaagtatttaaaaataattggtcat<br>ttaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	426	106	NA	intergenic
0	chr2	150335232	150335540	1000201	0	-	Ya5ACA903; RIP_Alu_chr2_150_01	GGAGTGTGTTCTGAGTGAAAG	TAATGCCACATTCATCTGTG	SINE	Alu	Ya5	taaacttcgatctgggatcatatttctcctaccagaaatagaagctttaatatttcctttagttctttaatgtttcctttttatatggcattgataaatt<br>ctcttactcttgtttgactgaaatatatatatttcacccttatccataaaaacattttgtatatgcataaacgtctaagatgtcatgaattttttttcag<br>caatgtaaagatgctccattatattttggcttccataggttctggtaaggagtgtgttctgagtgaaagtcttttgacagtaatctcttttctttttcct<br>ggtttcttgaagttatattatgatgtacctagatgtagctttcttgccatttttactccttatatagtgtttctctgtttgaatcctc<font color="green"><u>AAGAAGCAGACA<br></u></font><font color="red">CTGGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAAGCAGACA</u></font>ttgtggcacagatgaatgtggcattactttatttgagaagtgcaaacccagggtagtataggtatggaaaacgggaaat<br>gagacaagaaaatatgcaaggaatgtcataaaatgtgttaccatgctgactattacatcaagctgccaagaaacgtggtagctgctcagtagctgagttt<br>actttccggcatacataacttcttaataaggggtgcaagaaggaaccacacctaggaatattccatggaagaaagaacagagctaactctccaaaactgg<br>gtaactgtgttaccttatcccttgatggccattcaggaaaccagacaatgcctgggaatataatctatccagcttgaaactaaggattcgtgtctgttat<br>taatttaga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	499	178	NA	intergenic
0	chr2	73978999	73979000	1000202	0	+	Ya5ACA917; Ya5-MLS48; RIP_Alu_chr2_074_01	TGGCCTGTTTTCACACCTTT	CCAAAGCAACTTGCACCTTT	SINE	Alu	Ya5	ttttgagggggacaaacattcaaaccatagcaccgcctgtgtgttaaacacccacttaggtgctggggctgtaaaaagtaaatctaggcgtggccctggc<br>acaggagggactccatttcatagagagaaaagaacacagacccttttgttttagggtgcttgctgccaaccgctctggagagacaggctgaagcaaaaac<br>accaaacatggagaagttatgacagttccccaaagtagtgacgaaggcacatctcaggcttgggaagtgtcctcggtgggtgccaggcctgcctttccca<br>gcctcttctcggtgaagagatctctggctaagttctttaccttctctgagatttggaacatactgctgtttcacctaccaaagcaactt<font color="green"><u>GCACCTTTTCT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GCACCTTTTCT</u></font>attgtattaaatatttcagtttctccattgtatggaggcttccagcaattagtttacaagccaacttatttactattca<br>gtaactttttttgatattgagattgttcctaattttgatcattttaaacaaaggtgtgaaaacaggccaaatcttttcattcactcatgaccatttcaca<br>aagatagattcgtagaataagtattttcaaattccctttcagaaaagtagtacaatttaacactcacaagcagtgaatgtgaagccaattctccatacct<br>ttgccagcaagggtggccccaagaaccacacacagtaccccagctaaaggcaaaggtagcttttatcctggccatagcacactgctgatggtcaacaaga<br>caccaagtcc	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	171	NA	intron:ACTG2:NM:001615:1/9
0	chr2	174798887	174799191	1000203	0	+	Ya5ACA928; RIP_Alu_chr2_174_01	TTTCATCTTTCTAGGCTTCACG	TCCTAGCCATAAATCACAAATCA	SINE	Alu	Ya5	cactccagcctgggcaacaatggcgaaactccctctcaaaaaaaaaagctttctgaggcctcgccagaagccaaacagatgctggtgctgtgtttatatg<br>gcctgcagaaccatgagccaaataaacctattttctttataaattacccagcctcaggtaaccctttacagcaatacaaaatggactaatgcagaagtac<br>agtaagtagcatgcatttgggtagaatggcctaaatttgaagtgagaagctttgagttctatttctggttgacataactataagtgtgaccatgaacaaa<br>ttatttcatctttctaggcttcacgtttctttttatgaggaaactagacaggaagatattcagctctgagattctattttctatt<font color="green"><u>GAAAATGAGCTTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>GAAAATGAGCTTCTC</u></font>aattctgatttgtgatttatggctaggataaggtttaaactattaatacaatatctcaaaaaattaaaacttgagattta<br>attcagggatttctgatgtattacactaatgatctcatgactacttgaacaaaatacttctagaataaaatactactttagaactctcgagactaaaatg<br>atgttaaaaatatttttaatcgctatactgtaatgaacacagactaccaaaaacatttattaatgttctttttttttttggcaggaatttcttttgttct<br>ttttttgagacagttttgctcttgttgcccaggctggagtgtaatggcgccatcttggctcactgcaacctctgcctgccaagttcaagcgattctcctg<br>cctca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	445	125	NA	intron:OLA1:NM:001011708:2/10
0	chr2	196444673	196444935	1000204	0	+	8629; Ya5ACA953; RIP_Alu_chr2_196_01	GCTTTGCAATTCTTTTGGCA	TCACTTTGAACCAGTTTCCCTT	SINE	Alu	Ya5	catattaaaattaaaataagggtcttgctctatcacccaggctgaagcgcagtggtgccatcatagctcactgcatcctcaaactcctaacttcaagcaa<br>ttctcccgcctcagcctcctgaagtgctgggattacaggcatgagcctcctctaccacttcttataagaaaatgctcatccacatacctattcccaagag<br>agcttaaatacatttttatatagtttctatgctctcaagaatttgctttgcaattcttttggcatctagtaatactatacaaataagtaatgtaaaaaaa<br>aaaaaccacattcacttcttataaaaacatctccttaaaaagtgttccatttcaaatttatttgaagtcaaactaacaaggatt<font color="green"><u>AAACTACTTAAGGGAA<br></u></font><font color="red">GGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGC<br>GCCTGTAGTCCCAGCTACTTGGGAGGCTTAGGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGC<br>CTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACTACTTAAGGGAA</u></font>actggttcaaagtgacaccta<br>ctttgaaatattctataaatcaacagaaattcctaaatctgcatatgggagataaagcattttaaacatcataaaatatctcagtgttaaatatttttaa<br>aatttttctgaacactggccttcaaaatgccaaataactgaatatatttcagcaatataaattgaagaatattctttttacccagttgttggcatggcaa<br>atctttgtttctcacataatcccatttcaataacaggaaaatttacctcatgaacccaaagacgtttaatcacttctgtggtttctgttgtttctggtct<br>tgacaaacaaacaccttgaatgacacgggagaaatcacggaggttgaacaagtagtgagattt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	450	171	NA	intron:DNAH7:NM:018897:40/65
0	chr3	191773343	191773631	1000205	0	-	Ya5NBC51; Ya5NBC345; RIP_Alu_chr3_191_01	ATATTCCAGAAGTTTCCTTACATCTAGTGC	AAAGCTTTAAGTCTCCACCATCTCT	SINE	Alu	Ya5	tagcatttcactaagaatactgcatgcagcgggagggagaaagtcctccaacacttccgattactaattactccattcacaatttccatgatttcaatca<br>acctccaagtaaagctacaccctcctcttagacttgaatatagattggttgggtttctactgtgcctcaagaaatacactgctactagcaaaaacatttc<br>acagctcagtgtcaattgcaaacagcagattgtttctgccttagaacgtataaacttgcaaaagggggtccagagtcttacacttttgcccgccatctct<br>tcttccttcattatcctgaggggcatgcaaagctttaagtctccaccatctctgctgtacactttttttcagaataaaagtatcctgattaa<font color="green"><u>CAAAGCAT<br></u></font><font color="red">TCTCACGCCTGTAATCCCAGAACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTC<br>TACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCG<br>GAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CAAAGCAT</u></font>taa<br>ccctggacatgctgaccactctcatggctgtaggggcactagatgtaaggaaacttctggaatatttaaggtttctattttctctcaccattttaatata<br>ctcggaaggagggaaagagtaagaatgtaaaataaacaaacaaaaaaacctagaaaacattaactgttcaaaaaggaaaccattcaatgcaaagctcagg<br>aaaaaaaggggggagtatttaaatgtggtattaaaaatggtttagcttctttggtaatctgaaaaaagtatatagccgggtttacatcagatccaggaaa<br>cccgtgtaggaatattttatctctatttttctctttgcattttatgcctctctctctctttttcctactatctctctttttcaaaaaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	60	437	140	NA	intron:IL1RAP:NM:134470:3/9
0	chr3	17706705	17707011	1000206	0	-	Ya5ACA1002; RIP_Alu_chr3_017_02	GGGGTTGGAGAACCCTGTTA	AAGGAGTAGATTGTGATGGCCT	SINE	Alu	Ya5	ctagctttacgtactgctggaaagcagtgtccctgtctatctacaatttagtcttataaagcagcagtcccccctttttggcaccagggaccagttttgt<br>ggaagacagtttttccatggatgggggtggagatatggttttcggatgaaactgttccaccttagatcaccaggcattagattctcataaggagcacgca<br>acctagatcgctcacatgtacagttcacaaaagggttagcagtcttatgagaatctaatgccactgctgttctgacaggaggcagagctcaggtggtaat<br>gtgagcaatggggagcagctgtaaatacagatgaagctttgcttgcttgtctgtggccccaggggttggagaaccctgttat<font color="green"><u>AAAATATGGCTATTTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAATATGGCTATTTTTA</u></font>tgcttcagttctcttatattcttattataatggttatttttccatatttctttggtttgtcattcttgtataggc<br>catcacaatctactccttgttatgttttctagtcttgtttcccactgtttttttgttggccatgttatgacttattaaagcatcatgtattatagcaaca<br>attcttttattcatatccttttatactgattaaatgctatctcttctttttcgctcatactggtccttctagcactgttgacgttttgggctgaataact<br>gattttttgggggggaggggtcctatcctgtttgttgtatgtttaggtatgtttagggatgataggtttaggtatgttcagctgcatccctggccactac<br>tcaccag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	457	132	NA	intron:TBC1D5:NM:001134381:1/24
0	chr3	72462417	72462696	1000207	0	+	899; Ya5ACA1020; RIP_Alu_chr3_072_01	AATCGCCTTCACTTTTCTG	CAGCAAGGAAAGAGGTAGAA	SINE	Alu	Ya5	agcagtcaaacaggaccccacacttagaaggaccctatgcttagttaatgctcagctgtcaccgacttgaaattctcaatgattttttaacaggggtccc<br>tgcattctcactttgcactgggccctgcaaatgatgccgcttgtgctgctggagaaccctcctgccctctttgcaagttcctctgatctgcacgctcaac<br>tagtttctcaatttttcttcctcctgttcagaatcaaggggcactttctttgtattgtgttcacagctgagattcaggttctgaagtcacccaggcttgg<br>gttccaatcccagctctgccgctttgtagctgtgcactcccaggaatcgccttcacttttctgagcctgcgtttccttgtctgt<font color="green"><u>AAAAACGAAGACAGTA<br></u></font><font color="red">CCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAA<br>AAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGT<br>GAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACGAAGACAGTA</u></font>atag<br>tttctacctctttccttgctgcagggatgaaatatgattttttttctgtgtggcaatcactaaccccaggcccaggtacacagtagatactccactgggg<br>ctcagttgttactgcgcgtaaagaaagctaagatgtcaagtcagctgagtggaccccaatgtctagaccaatagcatgtgattcccaaggatccccaaaa<br>gctcagatcctccaagaacaaacccaagaaagccccaggtttcaagctgacgtagggagacagtctttaccttcactctatcatttatcaaatgtgtcca<br>tagctaatgtcacgttcacatgagccctgtgaaactggcattaaaactgccttcattttatagacgcagaagaacgaacc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	377	81	NA	intergenic
0	chr3	81428773	81429070	1000208	0	+	Ya5ACA1024; pAlu3-81151601; RIP_Alu_chr3_081_01	GGAAAGGAGCCAGAATAGCC	CAAACATCTCTGGGGAGAGC	SINE	Alu	Ya5	aacacttttatgtacacttctattgaagcacatattcttgccctgtgagtgagaaaaggttaacactttattaacttttgacttctttttttcccttcta<br>aatgtgactgtggaaattggtagtcatgtaggaaatgcaattccagtaccacttgcctagtgagcaaatacggtctgttctgctcccacatgtacacttc<br>tctaacactgattaccttatacataatcaagactagaaaataatggaagttcacatgcaggtttttctagggaaaggagccagaatagccagagtacaat<br>tgtaagtttcatcagaagaggaaaaactccttagttcagctgctatactgatagaagcactttcagctgtacttcacgagagt<font color="green"><u>AAAAATGAGTACCTGTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>GACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAATGAGTACCTGTG</u></font>tgcagggctctccccagagatgtttgctgccagttttgcacagcctccagcttgtggcacgtttctcttgatcctgtgaccccta<br>aatgggagctccgctggctcagagcacaacttgctctgcatcatcccagtacccgcaagccaggatatacaacctattgttctggcaattttaaaaaaat<br>tatcctctgtggccatcaccaatcacactcatctgcctgctttgtcatttgtgttatatttccacatacaaattaatattttatttaaaactttagtaac<br>aaagttaaataggttttgaatccctgcccatttctatttccaataagccgtgttatttttagtgtgcagttttgaagaaaaaaagattatccaataac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	470	156	NA	intergenic
0	chr3	105030613	105030921	1000209	0	-	18035; Ya5ACA1044; RIP_Alu_chr3_105_01	CCAAAACACAATAGAGGAGCTA	TTCTACCACCCCAAAAATGT	SINE	Alu	Ya5	taaattccctgagataaaattaaattcagcattctgttttctaggttatatattaagaatccttattataattcttctcacttaaatcctaacttattcc<br>aattttctgagccagataaatgtctcttgttcattctaccccatgttgcctatttctaggtcaattcttccttctaaatacagataatataccaaaacac<br>aatagaggagctatggttaaaatcgttcagtctgaagccaaatctctctgagtttgcatttttacagttccactcaatatgacctttaaaaaatacatct<br>ctctggggttttttggtaaaaaaaaagatgactgcatctaatatgtatgattaatgtgaggattaaatgaatattatatatatcgcattt<font color="green"><u>AAGCATTCTC<br></u></font><font color="red">TGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGCATTCTC</u></font>agttacatttttggggtggtagaaaagatattggaattgttgttttcttcccacttgccaaattttcttttctttttggaa<br>gatgtattaaagctttcaattaactttaattgacatatttatttaaaattcaacaaattagggtatactgtctaagtactgccaaacactaagtattcag<br>gatacagtagaaaataaatgaacagaagagtacttaaactttctgacttcttaaactttctattttaagaaaaatattggaagaaaatatacaaagttga<br>aaatatacagtatattagagagtgacaagtaatatagaaataaataaataagggaaaatacaggaacagtggtgcattggtcaagaaaagctgttttgtt<br>ttgttgcat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	552	233	NA	intergenic
0	chr3	191438115	191438403	1000210	0	-	pAlu3-191357341; Ya5ACA1048; 10422; RIP_Alu_chr3_191_02	ACCACGGTATGACCCACACT	GCTGATGCTACTGTTGTCACCT	SINE	Alu	Ya5	gttagaccacggtatgacccacactttgttttccgtgagttattaaagatgtcttgagggaagaatgaaagttctgcaacctgtagaggacccataatgc<br>cctaactcattcatttttaatatgtgtctaaataaacccggttaaggagatatatgaattacattactcacttcggggctttataaggttcttgcaaaaa<br>attaacaataatactataatttatcaactctaagacacattttttcacattttaatatctctaaaattagaattcatcttatagtgtcattttatattta<br>attagcaacttttttattttttagtgtacataaaagaatgatgtggttttggatcaatgtcatcttaaatttgattaaaaagcaaaat<font color="green"><u>AAAAAACACAGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA</font><font color="green"><u>AAAAAACACAG<br>G</u></font>tgacaacagtagcatcagcacttctaaccaaagtaggagatcttcatcaagcaccttatgataaggaaacatttatgattgctggagaccaaacatatg<br>ctcccttaaaatatgataataagaaactataataccccacttcaaagtatgcctgtttggcagaagcattattttgagatgattattttgagagactgag<br>gacacagaagaagctctgaaaacacgagtagatgtaacagaaatttatatctatgaagaaatctccatttgtaaaggtgtctccctctctacaagagaga<br>aaaagatgatctaactcaccgatatgcttatattaatagaggtggcaccaacttaaatgtaactttagatttaaatctgccttaattct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	715	413	NA	intergenic
0	chr3	68972906	68973185	1000211	0	+	Ya5ACA1050; RIP_Alu_chr3_068_01	AAGGCTTCCATCTTTCCTCT	AAACCACAGGGACTTAATGC	SINE	Alu	Ya5	tatatagaatatagccatggagaaggaataaagccctggtccctcccatatagaaaaagtacagttccacagctggtttagcagtaaactctcttcatgc<br>atggggaacacttagtgatttgtccttggtagcaccatgtctgccaaagaccacactgggcttactgcgcttgcccatggctagactaaccaaccactct<br>tgcttcagctactattattttctgtaatactgaactaaatggagtttctttctaaccctggacttaccctatctcacattctgtacctctgctaccaata<br>cgatagcactataatctgtgcaaaaatctaacatcattaaaaggcttccatctttcctctacaaggctaaatagaaggtgatattaaag<font color="green"><u>AATAAAATCCA<br></u></font><font color="red">TGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAA<br>TACAAAAAATTAGCCGGGCGTAGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCA<br>GTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAAAAA</font><font color="green"><u>AATAAAATCCA</u></font>cacacattc<br>tccacaaaacttttaatttgcattaagtccctgtggtttcacaattggctggcactgttcttaccttctttcctgacaggacaaggccacctgacccaca<br>actaaatcacaatgcgtgactatcaccctacacaattcatacactgtcacctccagttgatttactagaggggtttaagaggaactttttttctgatttt<br>tttttaattatactttaagttctgggatgcatgtgcgatctgttacataggtttacacgtgccatggtggtttgctgcacccatgaacccatcatctata<br>ttagatatttctccaatactatccctcccctaccccccaaccccctgacaggcccttgtgtgtgatgttcccctccctgt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	399	108	NA	intron:FAM19A4:NM:001005527:3/7
0	chr3	50038025	50038026	1000212	0	-	Ya5ACA1071; RIP_Alu_chr3_050_01	CTGGGCAACATAGTGACA	TCTGTCTGCCACCTAGAAAT	SINE	Alu	Ya5	tgagtagctgggattacaggcgtctgccaccacacccagctaatttttgtatttctagtagagatggggtttcaccatgttggtcaaagttctatactta<br>atttatcaattagtcttatatatttaaatgataaaatgaaataatgtggtcttaattactgctgtaaccctgatacctacactaggagacatatatacag<br>agcagggggaatcaatagctgttgaacaactatatgtaggcagcaatcaatgaaaacttgaacagtggggcacagtggctcacgcctatattcccaacac<br>tttgggagactgaagcaggaggacggcttaaggccaggagttcccaaccagcctgggcaacatagtgacaccctgtctcttaaaaaaaaaaaaaa<font color="green"><u>TTAAA<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>TTAAA</u></font>gttgtatatatataaaaggttaaatttctaggtggcagacagaagatacatagaaaatccaacaagcacattcacaggtaggtat<br>atattaacaggaataagtgcatctacctattcgccaagagaaataacaattccgtggtgttttgttttcttttttgagatagagtctcgctctgtcaccc<br>aggctggagtgcagtggtgtgatctcagctcactgcaacctctacctcctgggttcaagtgattatcctgcctcagcctcctgtgtagctgggattacag<br>gtgcccatcaccacacctggctaatttttgtatttttagaaaagacggggtttcgccatgttagccaggctggtcttgcttctgacctcaggtgatctgc<br>ccacctcagt	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	precise insertion position unknown	60	366	75	NA	intron:RBM6:NM:005777:6/21
0	chr9	106440810	106441109	1000213	0	+	Ya5NBC61; RIP_Alu_chr9_104_01	TGAAATAATCCAGTTGGGGAAG	GTATATCTCTACCGAGACTCAGTTTTTAGC	SINE	Alu	Ya5	aggaaacatgacaccaccaaaggaaaacaatatttctccagtggctgaccgcaaaagaaatggaaatatataagctgcctaaaaagaaattcaaaacaat<br>tttcttaaggaaactcagtgagatcaagagaacacagaagacaagtcaatgaaatcaggaaaacagtttgtgatctacatgagaaattcaacaaaaatat<br>agatttaaaaaaaaaaagaaccaaacagaaatctagaagctgaataagtcaatgaataaaataaaaaacctaatttagagcttcaacagcagactagatg<br>aagctgaagaaataatttctgaacctgaagacaggtcttttgaaataatccagttggggaaggggagaaagaatgaaaaaacatg<font color="green"><u>AAAAAAATCCTCCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAAAATCCTCCTT</u></font>atgggactatggagcgccattaagcaaacaaatactgcattatgagaagaaattgagaaaggcacagaaaggttatttaacaaaat<br>aattgctaaaaactgagtctcggtagagatatacacattcagatctgtaatacatgtatgcaattcaataaatgtgatgcctcatatgaacagaatgaag<br>gacaaaaaactgtgattatgttaattgatgccaaaaatcatttgataaaattttacattccttaataacaaaatctctcaaaagagtcatatacaacaga<br>tgcacagctagtattatgtcgaatgaggacaactgaaagctttccctgtaaggtctgaaacaagataaagatgcccactttcaccaatttcatttaaca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	55	493	180	NA	intergenic
0	chr4	181786435	181786736	1000214	0	-	pAlu4-182133785; Ya5ACA1153; RIP_Alu_chr4_181_01	GGCAGGAGTTAGCCAGGTAG	CCTGGGTTGTCCTTCTGTGT	SINE	Alu	Ya5	atctccctgtacttcactgaatattctggaatgcctaaaagcaaccctaattattaattcatcaatttaatcatttaaaaatatatgtgtacctaagata<br>taccagatctcagtctaggaatataaagaataaaacagtccttacctgaaggtttttagattagagaaaaacagtgacacggaggaagtaattaaaatat<br>gttattagaactgccaccaaatggatatgcacaaggtatcgtggaggtacagtggataattacctaaaccatccttgggtatcagtgaaagcttcttagg<br>ggaatattaccttagagaaattttaaagtttgggcaggagttagccaggtagagcagaactaaagaaaagcactctagatagatattt<font color="green"><u>AAGAAGACACAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAAGACACAG</u></font>aaggacaacccaggagtgtttttcaaggttattctacagactacaataaatcacagtaattattaataattgtctcacttacatgg<br>caaaaagtcgtattgtctcatcaatatccattcttctccttctttaaaaatgaaatcccagcattttagctgggcagttggctgaccatctaaagactgt<br>atttcttagtctcccttgcaattaggcatgggaatataactaagtcccagtcagggatatatgagcagaaggaaatttgtaatttatttttattttttga<br>aattttcataaaatctagctcccagaagaatgaatttgtgatttctaaactctgtcttcaaaggaaagtggaatgacttctattctatctttaaagctgt<br>ct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intergenic
0	chr4	113689438	113689730	1000215	0	+	11642; Ya5ACA1174; RIP_Alu_chr4_113_01	CAGGCCAAAGTTCTTCACAA	TGGCATGCTGCTATAATGTG	SINE	Alu	Ya5	gaacgtatttaccaaagaacttgtaggctaaaattagagagtgagctagtcctaatttaattcctagccatcagaaatcttaggtcatcgtatctccaaa<br>tttttattattcctacatacaaaatggaaatcaacaaatgtaagttacttaagccacaagcccattaacaagaacaaataaaagacatattttgatattc<br>agacggaaagtatcacaatatcaagcatttgttaaacatctaggatgacgcacatattttatcttctagatgaggttagacaacatacattatatcaaca<br>caggccaaagttcttcacaaagaatattaaatatgctaacgaaatattctttgcttaaccttcaagcacattagttttatttattt<font color="green"><u>AAAAATGTAAAGAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAAATG<br>TAAAGAT</u></font>gactaattctaaacaacagtaaataaaatgtactcatagcctgtaagtgtatttgaatcttgtaagttacacattatagcagcatgccattac<br>tctcaaggcaaaaagcttcataaaaactgatttttaatctctagaattagatgtaaacaatagggaaatctatgaattttctaattagatgtagtcactg<br>acctagtagcccgctatctatacacacatgtgtacatacacatatacacacgtacacacacatttgtgtacatatacatacgtgtgtataaacacaaaca<br>catacacatacatgtacatatacatatacagtcatgtgccacataacaatgtgatgttttggtcaatgatggaccagatgtatgatgatggtc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	496	189	NA	intron:LOC91431:NM:001099776:11/17
0	chr4	41782814	41782815	1000216	0	+	Ya5ACA1184;pAlu4-41937980; RIP_Alu_chr4_041_01	TGGCTCTAATGACCAAAAGGA;NA	CCCAGGTGATTCATTCCATC;NA	SINE	Alu	Ya5	atccaaggctcttgtttttaaaaaacatgaggccgggccccaagaatatttgaaagggtttcaaatggaaaataaaacaaggggttggcaagtaaccgct<br>tcttgatgaataaggtttttccaggatttttttttttcgccccacggaactttgtattttccgtgattcacaatgtttggcgtgttctatatcacaaaag<br>cagtcttggcttaacgacccccatgaacaaacttaggaatgtgatactacttattgtactgtttatagtatgtctatttacctattgatcttactttttt<br>tcttaagcaactatttctctcattagtatgctatagtgaaaaagtttgcaaatgttttcattggctctaatgaccaaaaggaat<font color="green"><u>AAAAAGAAACAAGATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAGAAACAAGATT</u></font>ttattttgctacaaataatgtggtggtgatttttctttccagaaacgaaatcctgaagttcgacatgtagatttggagatact<br>gtgagtttgatggaatgaatcacctgggtggggaccttggaaacaagtttgtccgtccactctacaaagtttcctcctctcctacactgaaagactcagt<br>gccatgcagaagccttttttttaagatgaaggaaatattttatgtaaagagcaactcagcaggacacagaactaaaactactacttacatctaacagaca<br>cactacaagttgaatcaatttgaaaatcatgtttttatgcttccatagggaacattttggttatttaaattgttcataatgtcccatatttcacctgttc<br>a	Other;Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	55;NA	467;NA	150;NA	NA;NA	intron:SLC30A9:NM:006345:17/18
0	chr4	138163290	138163582	1000217	0	-	Ya5ACA1257; RIP_Alu_chr4_138_01	AAATACCAGTAACGGTGTTGAGC	AATCTTGCTAAATTAAAGCAGAAAA	SINE	Alu	Ya5	tagtagtcagatatagtgttttaattaaacatcagatattcgttgaatagtttccacaagctccgttttgttttgataaagcatggacattgaattagga<br>aataagtttgaattttattcttgctcctcgctcagtaaccaatttgggggaagcttcttagaagtcttttagattcagtctttttttttctttttggaat<br>gtaaaacatcggaacatctaattcataggatttttttttataaataaatgaaataaattgtgtaaaataccagtaacggtgttgagcttaagaaaatttt<br>tattctgaactttgggaggccgaggtgggtggatcacgaggtcaggagatccagaccatcctggctaacacggtgaaactctgtctgtatt<font color="green"><u>AAAAAAATA<br></u></font><font color="red">CAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCTGGGAGGCGGAGCTTGCAGTGTGAACCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCATTAAAAA</font><font color="green"><u>AAAAAAA<br>AA</u></font>gttttttctgctttaatttagcaagatttagaaggatattaatattaataatttatttgacttttacacaaattgtaggaaactttgtattgtaatta<br>aaatccacaagagaaataactcattgattagtaccaagaaattcatttgggacttgtcttttcctgaatgacttaaatgtgttcatttgattggcaccat<br>gactaacccaaaatcaagagtgacagcaggccaatagggagaaacaagatggcaagtgcctgcacagaatggaagctgcagacccggatgtaaactagta<br>agaataaactagactaatgagttgctgaagtctgactgtgacctggtgtgagagtgagaagcccataacggctagagatacagggagaggttc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	466	155	NA	intergenic
0	chr5	12239501	12239791	1000218	0	-	Ya5NBC123; RIP_Alu_chr5_012_01	ATCAAGTTGACACTCAGTATTCACCAC	CTAGTCTGCAGAACTGTGAGAAATGTA	SINE	Alu	Ya5	ttatgcagaatgtttagtttcagacaaacattgctgaaatgatgggatgaacattaaaactgcttttatgtactaaataacaattttgtaatgttataga<br>tcatctcatttataatcagtacaaattcatcttctctataatttccataaatgcagtacatcaatttatgtgtatttaaagttaaaattaaattgtatgt<br>tgtttcaacatcaacaacctaaaaatgcaagtatttttaaaaatctagttgtattgaagtattatcaatccaatcaagttgacactcagtattcaccacg<br>acaagccgcttccacatttgtaggcattttgttacagcagcattccacttctcactactaatttctgtttagttcattcttactgca<font color="green"><u>AGAACAAAATACT<br></u></font><font color="red">TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTA<br>CTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGA<br>GCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AGAACAAAA<br>TACT</u></font>acagaccgggtaatttataaataatggaaatacatttctcacagttctgcagactagggaagacctggatcaaggtgctatcagattcagtgttga<br>gtgaggactcgctctctgcttccaagatggtggcttgttgctgagttctacaaaggataagggtccaaacattgtgtcctcacattgccgatgagatgca<br>tgggccaaactgctctctgaagcatcttttaaagtcattaattccattcatgaggccagaatcctcatgacttcatcacttccccaaaggccctacctca<br>ataccaccacagtagggattaagttttaacatgaatattggaggggcacattaaaccatagcagtgctctttgttgaattttgtcaagtat	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	490	180	NA	intergenic
0	chr5	71952318	71952608	1000219	0	-	Ya5NBC311; RIP_Alu_chr5_071_01	TCTTGGCAAGGAGATGTGAA	AATCACATCCGAGGGTGTCT	SINE	Alu	Ya5	ttctttcttttttgaacatctgttctacatgtgaccatattcactttttctgtagttttccccatttttcaaaattcttgaaagatcagtgacagtggtt<br>ggatgctttcattgtacaggttctttttgtatcttgaaaggtatttttttcttggcaaggagatgtgaacatatttaggaaattaccatatcttttgaaa<br>cttttccaggctaagtaacaattttattttacaaagaagacaaaaataaaatgaaagttaagtgattctgtagggcctttcacttgatgatctgcatttt<br>attccatttccctttaaactattgaaatgcctttgttctatcagtaaagtgttatatcattatgtctcagtattggatctgctttta<font color="green"><u>AAACTGGTGTTCC<br></u></font><font color="red">CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCC<br>GTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA<br>GGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACTGGTG<br>TTCC</u></font>aaggtgtgtagacaccctcggatgtgattttttaaaatgagataaaatcatgggacacattactaatatcctagaaaaacaaaaacattaggagat<br>agaccccatactatactggatatttataaactttaacatacagcacaaataagatgattggagagaatagagcttcttcaatttttctgtacttaatggc<br>ttgacaaataatattaatagctaatttgatttttctatcacgcccttacaccactaaacttgagtctgatacaataacttaaatggtctctgtgggcaat<br>gcatcatttgaataaaaacagtctctggaggttgctttcatcttccaggaaggttacttcttccctaagatgtcatccaatatgggggttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	584	279	NA	intergenic
0	chr5	21687341	21687648	1000220	0	-	6000; Ya5ACA1320; RIP_Alu_chr5_021_01	TGCCCTTGTATTCTTACAGCC	GATTGGTGGCTCCATCATGT	SINE	Alu	Ya5	attcgtgtgtgtgtgtgtttgcaagagagatttttttcaagatattttctcaatattgaaaaaattggaccacttttttttagcccattcatttatattt<br>tctagaaattagaacctagtctgtcattttgggttcagttactttcctagacttatcatttgcatttacaatttaaagacttctaaaaactgcagtagtt<br>gttctggttggttttacactttgacatcatcatctagttgtcaacattgttatgtaataaagtttatcaatgtttacattaattagtgcttacagttttt<br>taattttcattttttgaaaaacatcatactgtgaggttatttatttttaaatgcccttgtattcttacagccatgaagtttaatt<font color="green"><u>AAAAAAAATTATTTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGAGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAAAAATTATTTT</u></font>taccctgggaattactttgaggaaagaaagtggtagatttacagttttatttatcaatgtgatagttctgggactca<br>tatgtattgtacatgatggagccaccaatctcatacttaacatgtagctaaccacatttcacttaactaaaaatgtaagtgatggtaggttaagaacata<br>catgctattattaagctttaactgaattatgatttttatctttaccttatcaatttactagaaaagtttgttttctaaaatcatattaattgatcattat<br>tctttttttaattctatatttcaatgctttattatgtatttacaaatggcattttttttcagtaccagaataatttttttccacagctcatcagatattc<br>tgaattct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	479	156	NA	intergenic
0	chr5	82941832	82942134	1000221	0	-	Ya5ACA1352; Ya5-MLS06; RIP_Alu_chr5_082_01	TTGGGGAAATTGCTCTGTTC	AATGCTGGATGAAGAGCAGG	SINE	Alu	Ya5	gattcagactagcacagcttcagctgattccttgaggagtcctggagttcaaatggcccttcagagtagtcccacattgtggtgaaatgagtctgagcct<br>ttatatagcagtcagtcattggatgtgggctgccctaggaaggatgtgtccttgggcaagatgtgaacacctggagcacaatcacttcctcaagggatga<br>cacctaaagaccatcttctgagcacttccaataagagccatttcatgtcaatcacatatgtctccttgtcttggggaaattgctctgttcttttggacac<br>ttgtccaggtacacagtgctgtgcctgtactcgaataatctgtgcaccaccaccttgccagcccatgccaactctgcttccttt<font color="green"><u>AGAATCCTCCAGTCAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AGAATCCTCCAGTCAG</u></font>ggagagccctgctcttcatccagcatttttcatgtttgtaggcaccaagaagatgcttatcatgaagtattgtttatcctg<br>gagtatatcatagctgtcctgaagggcttaattcttttcactttttgtcctgctcaccattctagagaaaacagctatttcctctcattcatccatattc<br>ttgatttcttcaacatttgttcccagtataaaagcaagttctctacctgaggactattggtacatacactaatatggtcacatttagtttttggatattc<br>atagttttttttgttttttgttttttgtttttgagatggagtcacgcactgttgcccaggctggagtgcagtggcatgatctcggctcactgcaacctcc<br>acc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	476	157	NA	intergenic
0	chr5	88078911	88079222	1000222	0	-	6653; Ya5ACA1355; RIP_Alu_chr5_088_01	GGGTGGTCACAAAGACCAAG	TAGGCCATGTTTTCCTCCAC	SINE	Alu	Ya5	cacagtgattagcaaacaagatgaataacactagcttcctattttatatatcttttgaaaattaggtcgagccaaattagtgtgtaaactcacgtagtat<br>tttgctggacatggaaatgaaattttttccctcaaaaaatactttgtggtttgtagcctcaaaatgagagaaccagatcaaatccagaccaatgtttctt<br>ggatccaagtctctaccaaacactatgattagaaagaatggtgaggactgagaattgggtggtcacaaagaccaagatataatataagaaaaatggttta<br>gatgttatgatgttttacccaatatctcactgcaccgatttgcttgccattatggaaacagctagtagtggttctgaaagtcatt<font color="green"><u>AAAAGTAGTAAAAAA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAAGTAGTAAAAAA</u></font>aaaaaaaatgtggaggaaaacatggcctactcagctttgatggaagtggcttgttactgcttaatagctagaa<br>tgctttggaatcctatattgaaaataaaaagtgtttggttgttcaattattctgtcattgtcaattcccagacagttggctaagtttaatgatcctctag<br>ggatagagaagactctcaatcctgtaggcataaaagtttgacacacgtaggatatagtaacattgaactaacaaaatcttatgcacttagcaaattcatc<br>ctcttacctcaggacctctaccataggtatgagaatcttctaattcagaaatagaagaaaaccaaaagaaagatactgaattactccaccctggtgataa<br>taaatattatat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	500	163	NA	intron:MEF2C:NM:002397:6/11
0	chr5	103090216	103090521	1000223	0	+	Ya5ACA1368; 3715; RIP_Alu_chr5_103_01	TGTCAGAGGCTAACAAAATGA	GACACAGTGTTCACATCTATCTCT	SINE	Alu	Ya5	gaattctggtagaaattgaactatcagatgctgggttggaccagattaaatttaaggccctctcttgccttgatattctgtgaattacctttcagtaact<br>cacaaatttatggtgcccttcatgtcccaccatatggactgtcatctattccactctgtagccatgactctcttgtggagcctctctttcatcccctaat<br>tagtgatacacaagagagaatgggtgaagtactcatttaccatcttacctgcttcctaacaaatccacagccaaggggatgtgctctgcacaatcagagg<br>tttgtcctggcagatgggtaggcttgattacgtatgtccacatactattctttgttgtcagaggctaacaaaatgatgacatggat<font color="green"><u>AAAATGTGTGTGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAATGTGTGTGTG</u></font>tgtgtgtgtgtatgtgtttcctactctgtagccttatagtctacataaaagagagaacagtgtacttttccatgtataaa<br>gaaagtagcaaaaaaaaaaaaaataaggtagagatagatgtgaacactgtgtcacatcccattgttaaatgtattcagaaggtctggggtgaagatggtt<br>cagtgcacctcttctggttatacctgggcacgaaagctggcagaagcagatttgactcaggactagcagttctctaggactaaatggatatgggaacaac<br>agggtcttgagaactcaagttgaatgtcaatttctgtcacaaatctgacacatactcaaagatttcattacagtcaaagagcagtactggtggggcattt<br>aatagg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	498	178	NA	intergenic
0	chr5	142915574	142915871	1000224	0	+	Ya5ACA1410; RIP_Alu_chr5_142_01	ACCAAGCCTCCTTCTATGGT	CTCCTTTTCCTGCTGCATGT	SINE	Alu	Ya5	aggcaaagtgcaaggttgtccattgcatcatgatagcaatattgaaaagctgaaaaacaatctaagtgtccatcaaaaggaggcttgctaaaataattat<br>catataacttaacaatggaatgtcagtaacccattcaacagagtgaagtagtgtaacgttcagtatttcattgtacaataaacaatgatttttttaagtg<br>aaaagtttattgcttttaaaacaccttttattttaaaatatttgtgtactcactagatgttaaaaaataatacaataatcctacgtatcttttaccaagc<br>ctccttctatggtacatttaaaatatatcttaaagaaaaatataataggttgcagaatggaaaatatggtaggatcctatttatgt<font color="green"><u>AAAAATAAAAGTAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGTGGAGCTTGCAGTGAGCGGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATA</font><font color="green"><u>AA<br>AAATAAAAGTAT</u></font>accaaactgttgacactggatatctctgtggaatggaaaataacatgcagcaggaaaaggaggaaaatgagagattttaatttttttc<br>aagactgagtctctctctgtcacccaggctggagtgcagttgcgcgatctcagctcactgtaacctccacctcccgggttcaagtggttctcctgcttca<br>gcctcctgagtagctgggactacaggcacacaccaccacacttggctaattttttgtatttttagtggagacggggtgtcaccatgttggtcaggctggt<br>ctcgaactcctgacctcgtgatccgcccctcttggcctcccaaagtgctgggactacagatgtgagccaccatgcccagccttaattttcttaattta	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	481	169	NA	intergenic
0	chr6	26005979	26006279	1000225	0	+	NBC212; Ya5NBC132; RIP_Alu_chr6_026_01	CTCGTGATTCACAGAAGTGTTGTAAG	CGGGGTTCATCCTTAATACATACAT	SINE	Alu	Ya5	agagtaagacagagaggggttcattttttattttattttattttttattttttgagacgttgtctcaccctgtcgcccaggctggagtgcagtggtgcag<br>tcttggctcactgcaatccccacgtcccaggttcaaacgattctcctgcctcagtctcccaagcagctgggattacaggtgcctgccaccatgcccagct<br>aatttttgtatttttagtagagacagggtttcgccgtgttggccaggctggtctcgaactcctgacctcaagtgatctacccgcctcggcctcccaaagt<br>gctgggattacaggtgtgagccactgcgcccagccggggttcatccttaatacatacattagagatatagattctgtttttatct<font color="green"><u>AAAAAGTCTTTATAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAAGTCTTTATAA</u></font>aaatctgattgaatggttgaatgctgtgctaaaatctgcataatatcttacaacacttctgtgaatcacgagacagtttt<br>gaatgctaaatgtcagttaacagatctaaagggaccaacatctgctttcccaaattatatgaaagaagatcctgatccctcatcaggtgaaactcacatc<br>agacaacagtgtctgcatttctccaaaacccgcctcagccccatggccactttccagggttatcctgcctaccaagcactctctttcctcagaaaaactt<br>gggggaaaatgtagaataataattttttgaagttctgaccaacttcttgaatcactcagcatgtttttgactgcaggtacagaaaacgctgactcaacaa<br>attta	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	458	228	NA	intergenic
0	chr6	50560438	50560754	1000226	0	-	Ya5NBC327; RIP_Alu_chr6_050_01	AGGCAGGTTCAATGTTCAAA	TTGTCTTATTGTGCTGGCTAGA	SINE	Alu	Ya5	cactctatttagatctttgtcatagatttcttccatcaaaattttgtagctttcagcatacaactgtgtatatgttttattcaatttatcactgtgttta<br>atattttgagtgattgtaaatggcactgtatttttagtttgctgtccacatgttgattgctgctatatagaaatgtaattgatttttgtacatttatttt<br>atatcctgtgacattgtttaactcatttattagttctggggatattttcatagatgccttgatattttatatttagacaatgatgtcatgtacaaacagg<br>gatagttttatttttccttctttaatctgtttacctttttttttcttgtcttattgtgctggctagaacttctggcaatatgttgaat<font color="green"><u>AAGAATAATGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAATGAG</u></font>aatgggtatccttgagttattacaaaccttagggagaaataattcagtttttcaacattaagtatgatgtt<br>aattgtagatttgttgtagattcttcttatcgagttgaataatttcccttttactcgtattttctgagagtttttttttaaaatataaattgggtttttt<br>ttgccccctttttctttttgtttttctgcgtggattcatataatcatgtgatttttgttaccctgttagtatggtggactacattaattgatttttgaac<br>attgaacctgcctggaatccttagaataaagtgcacttggtcataatgtatggtttttaaaagtgtattgctgaattctatttggtaatattctgctaaa<br>aactttatatttacatt	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	668	339	NA	intergenic
0	chr6	129778783	129779077	1000227	0	-	Ya5-MLS19; 2128; Ya5ACA1492; RIP_Alu_chr6_129_01	GGGAGATTGGTGGGGAATAA	GGTGGTGTGGCTAGGAAAGA	SINE	Alu	Ya5	accccaaggatcctgtgacatcagaacttcccttatacaagcccccacatgctggggctgtgcagtctgtgtagggcccaaagggtctggctctgggcga<br>tggaactggccagggaatggctcaccatgctgtgtgccctgacatatctggcccagtggttacataactcccaccaagactgcatgaggctcccaagcat<br>atctttcccatggagaaagcaaaatatacagtaagaaaacaaacagctcttcagaaatacagattaattaatttaaaatttgaattctgagaatagtacc<br>aagagactaagtaaaatggagtgactgtccgggggagattggtggggaataaaactatgacggagtaaaaagaagttgatc<font color="green"><u>AAAGAAAGTGTATAATTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCC<br>GTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGG<br>GAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCNTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AAAGA<br>AAGTGTATAATTTC</u></font>agcaaagaaagcttccctttggacagggttggcactctttcctagccacaccaccatgggccttttattttcttttttgtgagata<br>aggtcttgctctgtcacgcaggctggagtgcagtggcatgatcttggctcactgcagccttgacttcccaggctcaggggatcctcccacctcagcctcc<br>tgagtagcctggattacaggcatgtgtcaccatgcctggctaatttttgtatttttagtagagatggggtttcgccatgttgtccaggctggtctcaaac<br>tcctgggctcaagcaatcttcccacctcagcctcccaaagtgctgggattaccggcatgagtcactgcacccagccaccatggttatttagatag	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	437	123	NA	intron:LAMA2:NM:001079823:40/64
0	chr6	138989442	138989748	1000228	0	+	Ya5ACA1504; RIP_Alu_chr6_138_01	TTCGAGCCCATGGTAAGTTC	TGCAGCAGAATTTTAGACTTTCA	SINE	Alu	Ya5	aacaaccatccagtcctgcctgatcagtccacttgcttgaattctaaaacctcacttagcttttggaaacaaactctttaggtagaatgttaatacagga<br>gtctcttccctcgcaaagcaaaatcttgaaagagccacagacattttctcactgttaacagtggtagataggttgattatgtagtccataaattttacta<br>aatcatcagacacacttgacttttctctgtgacggcatagctttaagtaaatattaagaaggcatttgcatccattaaaacacagaatttaaaaagtaaa<br>aacacctcttcgagcccatggtaagttctacattttccagattctcagcattagcaaatattgtttatataatcaagaaactttctt<font color="green"><u>AAAAAAAATTGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAAAATTGTA</u></font>actaccactataagcaatcaagactaaacaaaaacattactgtatatcatatacaccttcttattgaaagtctaaaattc<br>tgctgcacataaaacacctaaaacaatttagaacatttgccatttctttctattctaagggaaataataggattaatgagatgttgatgagaaattgtct<br>tctctatgcaacactgctctctgcaaaaataccaaactatgtcaaacctgttcccaaaaggaagaggattaaattctacacctagaaaattaaattctca<br>agctacctaccacacagtctgtcaatttatataggttactataatcaagaaaccactgcttttggtctatgttttaaggatgaataattaatacacaaaa<br>agttttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	499	179	NA	intergenic
0	chr6	20873358	20873665	1000229	0	-	3176; Ya5ACA1572; RIP_Alu_chr6_020_01	CGTGGGGAAACTAAAGGAGA	TAACTTGCATTTCCCATTGC	SINE	Alu	Ya5	tgataatttggccaatacagttataaagttacagaaatacagacaagacaacacatgctggcttctcttacaaagtcctttctggtattattccaaacca<br>aggtatagaatgaagtgatgtaaaaaaatcaactaaaagtcttatcatacaatgtttttgtttggggccataaagaaattagcctactcttatttttaag<br>aaaatgttatggtttgaaaaatgctatctaagagagagagaatgaataacaaggagttcatcctagaaataatgtatgtagatgtacagaatacaaataa<br>gtaaagctgcaatcctattgttaacgtggggaaactaaaggagatataaagaaaagaggatagcaaaacagataaactgagtgcattt<font color="green"><u>AAGAATGTAACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGAATGTAACC</u></font>attacctttgcaatgggaaatgcaagttaccaaactgtaatcaaatagtaaagttaactttactatactcataaacttaa<br>aacaaacaggctcattgaaaaaaactaaataaagtaataaatccctggctcctttactcactagaaggtagaagttatcatgtatttacttacaccgatg<br>agactggaaagtattcctaacatgtaaggcaatccacaaactttttcccactacattcagactatactaactgtatcagagattacatataatgagagga<br>tgcatacaagtgttctttcaaagcacatattaaaaatcaataaaaattattttattgaaatgcaactattgaaaaagcagatgtgcttttgtggtccaat<br>accctccc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:CDKAL1:NM:017774:7/16
0	chr6	157877845	157878137	1000230	0	-	Ya5ACA1579; RIP_Alu_chr6_157_01	GAACTGTTTTCTGGGCGCTA	TGGGATGTCAGTGTCTGTTTG	SINE	Alu	Ya5	aaaagaaattagctaatttagcaccggatactaaaatgatgagaagcctttacagaactctccctccaatcatatacatcagcaagagctgtttgatttt<br>ggatatgatgataaatacctatgcacaaactgccaaagcattgtacattagaggtacagaaattcattccaggtaataattagaaatgtagcactgccaa<br>aagattatatggaatttttttcagttcaaatagcaatctctttgaatctttagtaaaaattgtttttgtgcattgatgtttatacatgaaaaatggaact<br>gttttctgggcgctatattatctgagaccacacaatcagagtgcatccttcctctgctcagaactaaatatttgatattggtcatt<font color="green"><u>AAAAAGATAGATGG<br></u></font><font color="red">AGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAAAGA<br>TAGATGG</u></font>agggatagatagacagacagacaggcagacagatagatagatataaaatcattttagcatcaaacagacactgacatcccagaatcaatactg<br>tcattaattctatattcatgtttagagactggcttacaggttagaatttgacataatgctgattccttgaacaaaacccctaagactaaattaatttctt<br>aaacatttggataagaaacatggatttcattattgggtaattaggtcactctgttttccagaggacattctttgggagaagattaacttaaaaactaaac<br>aaaacaaaagaacaatattaacaagatatagcagagacattaaaaccaagtgccctttggaacaagaagtagagaatcttttcctgtatcaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	493	186	NA	intron:ZDHHC14:NM:024630:1/9
0	chr7	86555240	86555541	1000231	0	+	Ya5NBC22; RIP_Alu_chr7_086_01	TCTGTGTTCTTTGAATGTGTATTACTCTTA	GAATGTAAAGCTGTAACTTTCCTTTTCAAT	SINE	Alu	Ya5	atatctcttcaggaacctgatttcaattcttttggataaatacccagatctaggaatcttagatgatatggtagttccatttttaattatggggggaatc<br>tccatactgttttgcatagcatcatagcacctacaccagtttgcatttgcactaaccatgtgcaagcgttccagtttctccatatcctcctcaacacctg<br>ttatcttttgtgagattttttaaaataatgaccatactaatgggtatgaggcaatatctccttgtggttttgatttgcatttctctggtgattagtggca<br>ttaatattttttcatatatgtgttgttcatttgtctgtgttctttgaatgtgtattactcttaaatctgacaaattaatagaccttt<font color="green"><u>AAAAATTAAGGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAATTAAGGTC</u></font>ttccttcactaattttttttagtgcaggaatggtttttataacatagtgaatgttaacaattgaaaaggaaagttacagctttac<br>attcaaaaaaagaacttctttttttgctttcatgatttttagttgacacataataattgtacatatttttaggtacagtgtgatattttgatacatgtgt<br>ataacgcataatgatcaaatcagggtagttagcatatccatcactttaaacatttatcacttatttatgttgggaacattcaaaatctactcttctagct<br>atttgaaaatatacaataaattgtttataattatagccaatctattgtgcttcctcctatctagctggacttttgtatctgttaatcgacctttggctac<br>tc	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	471	156	NA	intergenic
0	chr7	143677191	143677510	1000232	0	-	Ya5NBC35; RIP_Alu_chr7_143_01	GAGAAGTACTCAGAGAGGACATCATTT	GTAGTCATGGAGGTAAGAAAAGAAGACAC	SINE	Alu	Ya5	aaaacaggtagtgccgatcaaaccaggcaagctgaagcccatggctcctggacacaaatgatgacagctgtgactaaactcctaggcaaggctctttgat<br>gtgtctatctggccaataggcctctacatcttgaaagcaaagtagcaacattgagaaaaaaaagggccaggctgtgaaatgcaagttcaaagcaagcagc<br>aaagtattaatagttgagcttctttctgcaaataaaacacagagctctagaggcagcccctgcaaaatcaagagcagaactcctcaaggagtcctctcac<br>aaacagagaagtactcagagaggacatcattttattcacctccaacagtcaattcttcaaatctgacttgatcattttatcttc<font color="green"><u>AAAAAACAGTCAGCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTAAAAAAAAAAAATAAAAAA<br>AATAAATAAATAAATAAATA</font><font color="green"><u>AAAAAACAGTCAGCAC</u></font>aatactaaaatccattccctgtcttattttcccattgcccctgcattcgttcaaggtgtcttct<br>tttcttacctccatgactacaatatccatctaattgctacaacagctgattgccttccttgcccctccacttcactatccacaccagtccattctctcaa<br>ctgcccccagagcttttttttctaaatctaaccttagaatctgatctcatcatgaccttgcttgaaacccttccaaggaggcctatccccagaaggatga<br>agtccaaactcagtagcaggaatggcctacaaggcctttcatgatttggctgcccgactacccttccaacttcattctctgccatttcttcaccacatct<br>catgttaaacccacactatt	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	515	179	NA	intergenic
0	chr7	78195798	78196116	1000233	0	-	Ya5NBC96; 55662; Ya5_451; RIP_Alu_chr7_078_01	GCCATCAAACACTCTTGACCT	GGAGCTATGCCACAGAAAGG	SINE	Alu	Ya5	tcttaactttaaaatgactgggagtaatcctcactttttttcttgttcttaacttgtatcccagtggtttggatattggcactaaaccaatgtgccttca<br>aattcagacattcctatttttaatcacaagatcttgagtgagtaaaatatctaacacattgtaaagacttaagtcatatgatcattatcatagatatagc<br>ctaataccattacaagtggctgatatccacatgattacaaaactctgcatctatagtatgccctcatttcttaccccttttcagtgagcagaagcctaag<br>aactagttgtaccctgtgagaaaatattaggagctatgccacagaaaggaagagtaagatgaatcattttttcagatat<font color="green"><u>AAAAAGATCAGAGAAAGATGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCCGGGAGGCGGAGCTTGCACTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGATCAGAGAAAGATGG</u></font>acataccaattttgaaatctttaattcaaactttgatggtactaggtcaagagtgtttga<br>tggctctatctcatctatgtgaatagaattcccagctagaatttgagttccatagagtaagaaccaatgtgcattttgtttactgctaattcatgcgggt<br>atagcatatgatagatcattttttaaaaagctttttaatgaaagggtgaatacctgatgacaaattcttaaaattgggctgtttatataataatctataa<br>tctaaaataaagatccttcttatttttctacgatttactttgtatttaatatctcagttatcatcacccactgttaccataacctcgcagggaatgaaca<br>tccttaatgcagattattc	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	509	169	NA	intron:MAGI2:NM:012301:2/22
0	chr7	43380646	43380938	1000234	0	+	Ya5NBC182; RIP_Alu_chr7_043_01	GAAGGACTATGTAGTTGCAGAAGC	AACCCAGTGGAAACAGAAGATG	SINE	Alu	Ya5	gtttcattctttgcattgaaataagttatcactcatttcatataaaaagtattctggggttcaaataaaaagaaacactacgaaaattcatagaggttgg<br>ctccttttgaaataaattcaatgtaaagaaattctagaaaattacacctgttctctacatgattcaagagaacattgtatctttgaaacttcctgagaga<br>gcaaagaatggtaagaaggacagtaaggagataatgggtccaaccttttgaccaacagtcacaggtatgtgacttagagaccacgggaaaaggaattact<br>gaattagaagacaaactaaaacaaaatcatccccaacccagtggaaacagaagatgaaaatagaactttttaaaacccagaaatctaatttatgaac<font color="green"><u>AAC<br></u></font><font color="red">AGATGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAA<br>AAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAAGCTGAGGCAGGAGAATGGCTTGAACCCGGGAGGCGGAGCTTGCAGTGAGC<br>CGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATAGAGAAATATAAT</font><font color="green"><u>AAC</u></font>cagt<br>gaaaaaaagatgaaaatattttttatctaaaaaaatacatacctaattaaaattgaaattcttcatatttcagatagctggaattgatataataaaatat<br>atatgtaggttcatagtagaaaatttgtagacacataaataagaaaaaacaataataatccaatacacagcaagcttctgcaactacatagtccttctta<br>ccattcattgctctaataaagttttaaaaataaaatgttcttttgaatcatgttaagaacattgtgaaatttcctaaaatttccttcagtttcttgcatt<br>gaatttactccaaaaggagccaaggggttcctggaggaagaatttttgaactgaagaatgctataaacaaacaggagaaactgtcggacgcct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	563	287	NA	intron:HECW1:NM:015052:6/30
0	chr7	96732684	96732909	1000235	0	+	Ya5ACA1727; Ya5NBC201; RIP_Alu_chr7_096_01	CGCCACTTTCCCCAGTTA	CACCTCCCTAAAAAGCAGGA	SINE	Alu	Ya5	ttgtgaaaaaatatttgtaatatatatgatggaaaaagaggttagtagacataatttacaaaaagctgctgtaaatcaatatgagaaagataacccaatg<br>gagaagtgaacaagtgctatgaaaaagcaattaatcataagagaaaacccagaggttaataaacatgagatgtttcacctccctaaaaagcaggaaaatg<br>caaattaaagtaatatacatgtatcacttcttgttcatcacaatggcaaaaattaacaagaatgagaacctagttctggcatttctttattcatgcattc<br>ttctatttaacacatatttattaagtgccttacatgagccaggcatgattccaggtgttgaggatacagcagtgaacaagagac<font color="green"><u>AAAAACCTCAGTCCTT<br></u></font><font color="red">GATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTT<br>GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACT<br>CCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACCTCAGTCCTT</u></font>atggagcttgcagttaactggggaaagtggcgaagaaggtactcatattgctaatgaa<br>aataggaagtgttatagccttttggaaaggaacttaatatttattaaaataaacacataatcagcttgaattctaacagtagacttgaagagatttccat<br>catgtatagctgagtgacaaaaagcaagactctggaatgtatatgattgattatcacatggaaaaaaaaaaaagcaatgacagtctcctccccaccacca<br>aagcataggtctacatttatatacatcattgatgttaaaaccaccatctaaggtgtgaaaacacatgcatgaaactgtttacattgatcaattgaggaga<br>agtggaatggggaagcaaaaatctca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	460	218	NA	intergenic
0	chr7	83547815	83548123	1000236	0	-	pAlu7-83308024; Ya5NBC210; RIP_Alu_chr7_083_01	GAGGGGGTAGGGATAGCATT	GTGTTAATATTGTCCCCACATGTAA	SINE	Alu	Ya5	atagtgcctagacagctagaaaacataaatttgcccaatttttcttgcctatcatgcccccatcagtccattcttcaggttgggtcattcttctaaatat<br>ggatctatatctaggtctagctacatagataataaacatatattacatatatatgcaatgatctcatatatatatatgaatcatgtgcattctttcttca<br>acttatttaaacctcttgcattgttttaatttgaacaaatgtaacacaaattatgttggaatctatgtcataggttatagtaattaattatttttactat<br>tttcatatttttgtatgtgttaatattgtccccacatgtaaactttaaaagttcttaatcacagagattaaagtatatttttt<font color="green"><u>AAAGAATTATAAGCTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAGAATTATAAGCTGC</u></font>aaattataaactgagtaagatattaatcaaaattgcaactactcaaaataatttataataaagatttagtatgt<br>tttctccaaatgaaaatataatttggaatgataaatgtccaataaatatgaatggtaattttaagcctacggtataattttttatttttttttaggtagt<br>ctctttttttcttgttattattatactttaagttttagggcacatgtgcacaatgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctg<br>cacccattaactcatcattcagcattagggatatctcctaatgctatccctaccccctccccccaccccacaacagtccccagagtgtgatgttcccctt<br>ccgtgtcca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	62	750	424	NA	intron:SEMA3A:NM:006080:4/17
0	chr7	38474998	38475312	1000237	0	+	Ya5NBC216; 4601; Ya5505; RIP_Alu_chr7_038_01	GATGTGACCCTGGCTTGTAAA	CAGAGTCCCTGTGCAAAATG	SINE	Alu	Ya5	ttgtcaaatcaattattatcctgagaaaatggtatagtatcagaaatatcttatttagaataactaaacatctatttctaatattttgttttttaattta<br>gaaattaactagcatgtatttaattaggataaagtgtccaacatttttgatacaactgatagtgattttctccaatttatgaagtcagagatcctgcaaa<br>gaggggaatgcctttaactagttcactattacagccctagcacctagtacacggcaagcatgagtaaatgaataaattccataaatgaacaaacaagcca<br>gtgaatgaagaaacttggcactcattccactataagagcatattccgatgtgaccctggcttgtaaaaacttaatgtaaccagcagt<font color="green"><u>AGAACATACAGAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGCCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AGAACATACAGAC</u></font>acagagtaccagcataccaggctcttgattctgatattatctgcttaaaagtttcattttgcacagggactc<br>tgagacatcaccatttccccaaatgtggcatcctcaggacacttcttattagctgtcaaaaccaacttaatttctttattaagatgtttctttgttctca<br>gaaataaaggaaaaattaagttgagcttatcacagctacagattgcagacctgagcactctccccttcgcaatgccctaaggaaatctgcctccctggag<br>gggagtgtcagtgcttcctgcagaccctcttgcagtggaggaggcaacccttgctgtccttcacttactatggagatggagtatgaggaagagttttttc<br>ctagctctcttctga	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	456	141	NA	intron:AMPH:NM:001635:7/21
0	chr7	127407402	127407708	1000238	0	-	Ya5NBC354; 239207; RIP_Alu_chr7_127_01	GTAGCTTGGCCTGTGCTCTT	CCTCTGGGCTGAGAAACTCTT	SINE	Alu	Ya5	gatcttgcaagtctccacttccatgaggtattctggcacacacctggcagccaaatgtaaaagctacttacttgcataaatttagagtgactttttctag<br>accaagctgttttatttgaacaaaatggttctgagatgtgtggagtgtacttctaaactattgccttttttgagctttcactcaaataaaattgctctga<br>gctcctcctcctgaggcaagtgaattccaaatgtctagagattagtatacttagcctacagtaggatgaggaggaaaaaccagctagtgtcaggaatatt<br>aagacttaagaaccaaagagcatgaataaaaaaaacctctgggctgagaaactcttagcaagagtccttcacctcactaactttacttt<font color="green"><u>AAAGAAAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG<br>AATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAGAAAAAGA</u></font>ataaaataaaataaaataaagcaagcaaaaagggaaaggaattgtgaaaagtcaaggttctccaagagcacaggccaagcta<br>catatatcctatcctgagtagcttgaatcctgggccagctgtgggtcaagaatggcatttgccttattcatctatttattttttagttaccatactctaa<br>agcagggaacaacagacaacttcctgaagactaagtctgcccactgattttacagagctcatgagctaagaatgatttttacatttttgaatggttaaga<br>caaaaatcagaagaagaatatttgtgacatgttataggatataataaattcctcttcaaaggttttagcctgtaaattgttaagtacaatgagttctgag<br>gtccttt	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	65	466	148	NA	intron:SND1:NM:014390:15/24
0	chr7	11990770	11991024	1000239	0	+	Ya5NBC361; RIP_Alu_chr7_011_01	AATATTTTCTCCCATTCTTTTGG	TGTTAAAAGCGCAAGTCACAA	SINE	Alu	Ya5	caaaacaatgggcaaaactgagagtacagaaataagctgttatactaaaggtcaattaattttcaaaaatgggtctaagatatttaatggggggagataa<br>agctttttaagaaatggtactaagacaataatatcttcatacaaaagaatgaaattagaatccttcatactataaaggaaaattaactccatatgaatca<br>tagacctaaatgtgaaaggtaaaactataaaaattcttagaagccacagaggagtacattttatcctttaattagtaatggtctgttagctaggatgtta<br>aaagcgcaagtcacaaaagaaaaaagtgaattggacattatcaaaattaaaaagaaaaaactttttgtatttcaaaggataccatc<font color="green"><u>AAGAAAGTGAAGAC<br></u></font><font color="red">GGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCG<br>GGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCG<br>CCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGTGAAGAC</u></font>aacccaaa<br>agaatgggagaaaatatttgtgatcatatatttaataggggacttgtgtctagaattaataaagaactgtcaacttcaacaaaaagaaaaatagcccagt<br>ttaaaaataggcaaaagatttctcaaagaatatctattaatgatcaatagacacacagaaagatacttaatataatttatcatttgggaaatataaatca<br>aaatcacaatgagatatcataccacttcatattcactagggtggctaaaatcaaaaggcagacaataagaagtgttgatgagcatgtggagaagctgaaa<br>tcctcataaattgctgatgaggttctaaaatggtacagacacttagaaatttggcagttcaccaaaatattaaacatg	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	423	131	NA	intergenic
0	chr7	39558596	39558896	1000240	0	-	33173; Ya5495; RIP_Alu_chr7_039_02	GCCTTAGTGTGGCCCAAGT	CAGCCCCAAACCTTGACTTA	SINE	Alu	Ya5	agggggaggaggagggagtctggggctgtgtagtgttttctgataccacttctgacaccaaatgcgtgtctattattgacaccgaatatttttcacacca<br>attctctgacaccaactgggtgtccaatagttcagttcaattctgacactatctacctggagttagtgtcagatcccacaagttaaagggctcagtccca<br>aaagactgcccctatttcagctgctagccaccagtgtggtccccagtgaaccacacttctgtctaactgacaacaaagttggggattcctatgatcctca<br>cccttgccttagtgtggcccaagttaactagataatttgttagaatgaactcaagaaaatactctacttactattacagtttattat<font color="green"><u>AAAGGATACAACT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAGGATACAACT</u></font>tagggccaggtggaagagatccctaagtcaaggtttggggctggagggtacagagcttccacatcctttccaggtactaccctccc<br>agcacacctgtgtgctcaccaacctggaagatcctcaaatcttgtcatttagtggtttttgtggaagtttcattgccaatgcataggcatgattgattaa<br>atcatttgccatgggtgatcgaactcaatctccagccttcctccactccccagaatgaggtgggggagggagactgaaatttctaaccctccattcatgt<br>ggctggtttttctggtgaccagctttcagtgagtcagctcatgagtatatgaaagacaataaatttcagggatttttggagttctatgccaggaacaggg<br>t	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	452	138	NA	intergenic
0	chr7	136502166	136502464	1000241	0	+	Ya5524; Ya5NBC242; Ya5ACA1650; RIP_Alu_chr7_136_01	GGCAATCTGACCTTGGGTAA	GGCTATTCAAGTGGCCAAGA	SINE	Alu	Ya5	tggtaatgtaattgtttgaaggtgtgtgtctattttcattagactcagagactcagaggcgggtcacctgcttgtctcttggttgtgcaacttcctcatt<br>gaaattactggtcataaatattgtcatatatatcctcaaacctccaactaacagcagaaatcccctgcaagctcttaactgagacacctttgaatagctt<br>cagtggctattcaagtggccaagagctcattacctatacagataatttgggtgatttaatagattaactcaactactcaattgggtaattcaaattatta<br>caatatactaaacaaaattccctttcctccagtggttttatcacacaaagctaaacggaatatatctactttgcagtgtctctttaaa<font color="green"><u>ATCTAACTTCTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>TCTAACTTCTG</u></font>ctagcatatatcctctttgtcatcattattataaacaatttacagatgcagaaactgaggctgaaaaacattaaacaccttacccaagg<br>tcagattgccaaggttaatggctattctgggacttaaactcagatctcttttatttcataatttatgaacataaacactatgctgtcctgaaaataacta<br>cattttctttaaaagcatctttttataagtggcttctacagcactataaatctcaaaattctttctccatataccatttaatttgtcagtttctttctca<br>aaatgtggccctgaaattaacaaaatgttgtcagttaaagacggagttcagggggattatcaccaaatttggtttggaccccagaagtctatcttagta	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID:11042148</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	605	310	NA	intergenic
0	chr7	134839756	134840073	1000242	0	-	Ya5ACA1592; RIP_Alu_chr7_134_01	ATTGGCTTGTGGATATGCCT	AAGAAATGCTCCACCCCTTT	SINE	Alu	Ya5	tgatgtattgctattaggataagtcttgctatttgtataggtgtgtatgtcagataactgttcaaaaacaacttttttaaagtatggctactaaaatctc<br>acctcttgagttttaaagcaattatggagtagaatttgaaatcaaaataatcaaaattggcttgtggatatgcctaaaaccagtttggaaaaaaggtcaa<br>ggcaaaaaagcagtgtaattagaagaataaaatgctttcccttaaaaatagtagatgtgaccgggcacggtggctcacgcctgtaatcccagcactttgg<br>gaggccgaggtgggcagatcacgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatac<font color="green"><u>AAAAATTAGCCGGATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGATCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAAAATAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTAGCCGGATG</u></font>tggtggcacgtgcctgtaattccagctactcgggaggctgaggcaggagaatcatttgaacttggg<br>agtcagaggttgcagtgatctgagattgcgccattgcactctagcctgggtgacagagtgagactttgtctccaaaaaaaaaaaaaaaaattagtagatc<br>ttatattactgcttttggaagcaattagtgaatgatgtaggcaaaatagtgattgaattttgaaaagcaattagactgaaatttcaaaggggtggagcat<br>ttcttaatagcaacaaacagatacatggtcattaatccaaatatctgaaattttctgagcatgtttttcagagtttggaatagagtggaagtgctaattt<br>tctgattatttaagaacc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	850	516	NA	intron:CNOT4:NM:001008225:1/11
0	chr7	113740755	113741049	1000243	0	+	238237; Ya5ACA1611; RIP_Alu_chr7_113_01	TTTTGGTAAAGATGCCACAGAA	TCCTAAACATAATACGTACAGGTGA	SINE	Alu	Ya5	ctgaacatcttcatggtgcaatcacatagagtccagaaattctctgaaaataaggaaagtttctagactcactacatgcatcattcagggaaataaaaat<br>atggggttacattctgtgtctgaaagtttccaagctaaaagacaccactatgaacataagtttatagaataacatagctttggctcttctgtgatgaatt<br>atttggctcagtggtaacaatttacacatgacttttaggacattaatctaaaagatacttccactgattatttggaacatctttctggagaagacagtct<br>ctaaaatggagaatttttggtaaagatgccacagaatataatcttacatttccattttactaaattgttaatctattaaaggt<font color="green"><u>AAAACAAAAATATTGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAC<br>AAAAATATTGTC</u></font>attatttgaaattgtataattttgtataatgttaaaaataactacaagaaaggatatataattctaacacatatcacctgtacgtatt<br>atgtttaggataattataatccaacattttatcttgagtctagttgtaactgatcaatattttttcaaactgaaagtctggctccattagtggtttatac<br>attaatttagtggattgcaaccagcatatttaaaaatgtaatgtaatagaataaatagaacagaacagaaagcagaaccaaaaagaatagaaaagaacag<br>aataaaatggaaaatacatgctattatggattaatatcctgtgaaacttttatgtacgtgtatttgagttctcagtgctaattacatttttttct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	496	184	NA	intergenic
0	chr7	120668352	120668670	1000244	0	+	pAlu7-120421716; Ya5ACA1622; RIP_Alu_chr7_120_01	CATGCTTGCCAGAACAGAAT	GATGCTGGTTTTTGAATGGC	SINE	Alu	Ya5	aaattgaagactcagaggcctcagttctgggcctgccctgtcattaacagcatgatcccacttctgttatttaactctttgggcctcagattgcctcttc<br>tgttaaaaaaaaaaaaaaagtgacggggaagggagggagaaaggacacactctaaggcctcttctgactccatccaacgtgatgctacacagccactcaa<br>tgtgaacctctgtgaaggaaagactaccatttatctaaggaggtttgcttgagaaatacatcaacaaagattaaactttaggctgtgtctatatcaaaga<br>tgtggaggaggttggttattaatgacaaaccatgcttgccagaacagaattagaattagaaagcaagatatattctgaatg<font color="green"><u>AAAAAGAAATTATAAAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGAAATTATAAAACA</u></font>gaattggatggaaaaataagcacttttgaggaagataatctttattttgccattcaaaaacc<br>agcatctctcctaaattttctgttgtttcttttagcagtacggccattctctacaaccagaaactttagaaacatctttcacatagcagaccctcgtttt<br>ctccaagatatgcagtcagttcttctggctcactcctgtcaggcccatctcttcactgtacctaaagtaccactccttccaggtcttcaaatcttatctg<br>tccctaaaggcctgttcacatattatctgcttcatggacccttccagaaaactctgacctccatgactctttctctatttggaacaattgtggctcactg<br>agagtagaggtgggaaaat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	476	158	NA	intron:C7orf58:NM:001105533:16/18
0	chr7	24644468	24644773	1000245	0	-	Ya5ACA1648; pAlu7-24386109; 238947; RIP_Alu_chr7_024_01	GCCTCACAGTTTGGTTCTATGG	GGACCTGCATTTGCTTTCTT	SINE	Alu	Ya5	accactcgtccctttgactttcactcctttgctctaagtaagagctatgaagaccatttatttcttcaggaaaatgttatatgatcagcaacagtacttt<br>agacaacagtagtccttggtttaattcaggactttaggagaagtaaaggaacagaaatgatcaatgacttgaaaactccattccttagtatgtgtattaa<br>cctaatgcttccaaattgggtgaggagaagtaggaatgtggaaagactaatggcaaggggttgggggtcaggggagagtcatgtgagaaggcagaatcat<br>gttagaaaaagaacccaagcacatctgaagattttttcatatcagcctcacagtttggttctatggaagaagagaatctcact<font color="green"><u>AGAAAATACAGAAATTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGAAAATACAGAAATTG</u></font>aagggagaaaaaaaggtttttttagaaactgtagctataaatatattaacatggaaaaccaacatacttggattcaa<br>ctgggatcaattttactttttctaagaaagcaaatgcaggtccacatttattaacatatagctttttaagctctgagatgttgtcaaaaacttggaacct<br>ctaattcactttaaggtcagattttttttattagctttcaagaggcaagtaccaacttaaatttaactaatcaaactaaaaaagacaaaggaaacacaca<br>caaaaaataaccagaggagcaagtgagccacatactatttaaataaataaatcttgttttctttttttaaattaaagagcactattgcaacactagcata<br>actcaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	499	176	NA	intron:MPP6:NM:016447:3/13
0	chr7	27480875	27481135	1000246	0	+	Ya5ACA1672; RIP_Alu_chr7_027_01	GCACATGTAATGGGGCTTTT	GGGCACTGTACAAAATGCAA	SINE	Alu	Ya5	caaaacagtgctgaaattctctcacaaactcatctttacactcttccaaaatgctgaatcggtcaccagagcttccactattacttcacctaatgaccgg<br>cttagaagcccaacacctggtaggtactcaacaagtaaatggatgagttggtgaattaagttttaaaattaccttcatttgctacacatttagataagat<br>tctggagccattctcctcttaggagtcagtcgcacattatttctcgggatgagttatctcctgggaagatttccaaagaatcattcattagatcactttt<br>cacttatttactcactattcatctaacaaacatttcctgagggcctactacatacaaggctcaacagcacatgtaatggggctttt<font color="green"><u>AAAAAATTACATAT<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAATGAGCCGAGATTGC<br>GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATTACATAT</u></font>ataaatatacaaagaaaaaaaggca<br>tatcaaaataaagaacaaaagatataccaaaatgttaacagtggtgggatcattcatcatttttcttccttctttttgcttatttgcattttgtacagtg<br>cccatgtcttgtttatttaaagtgttctaaagcattcaagatgcatcttgccctcaaaaaacatggatagagtgagtgggcaggaaatgggacaagacaa<br>gctgaaaaatgacaactctgacacaagtgcagaccgtgatcatttccctaagaggcttaaatgctgtcagggttaagaggaaattgcgatgaccttgaca<br>gatgagagaccaggtcacagaggtaccatccttgaagcacaggagggtttctccagggagc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	437	162	NA	intergenic
0	chr7	76405161	76405162	1000247	0	+	Ya5ACA1693; RIP_Alu_chr7_076_01	CTCAAAGCTCAGAGGAGGGA	ATCCTACTCTGCTCCAGCCA	SINE	Alu	Ya5	tcaccaggaagtcttcctgtgtttaccctaaacataattcagagaccaattactcctcaccgcctccatggctatcactttcgtcagacttgctacattt<br>tagcaatcgtcttataactgttttcctattcccacccttgcctccttccattctattgcccacaaagaaacataagtgatccttttgaaacataagtcag<br>atcacggcatttctttcccaaaaagaaatgcaagtgtctaaattcttcgcctacctcagggtaaaagtccaagttcttatatggcctttaaagacctctg<br>tgtactctcctcctccctccattagttctctgatcttcccttcttcttttcttcctcatcctactctgctccagccacgcagtctttc<font color="green"><u>TGGCTATTTCTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>TGGCTATTTCTT</u></font>gaacatagtaaacatgatccctcctctgagctttgagttgtttcctttgcctgggaaattccatctggagacttccgg<br>gcttgctcacctatataggcaagtctgtacatgagacctgctctgaccactcaatttaaaatggcagcaaaatccttcctggcaccccacctttaaaatg<br>gcaacaaaagccttcctggcacctttcctttctagctttggacctattacataatctatgtatcttttgtgttatcatctgccttccccgccagtatgta<br>aactccacaaaggttgagatttttgtttggttcactgatgtatcccaaggacacagttcagtatctaacttgcagtggaaactcaccaagtatttatcaa<br>attatttgat	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	396	80	NA	intergenic
0	chr8	61367552	61367857	1000248	0	-	Ya5ACA1766; RIP_Alu_chr8_061_01	CATCATGGTATCCCAAGCCT	TTCTTCTGGGCAGTCTGTCA	SINE	Alu	Ya5	tttgcataattatttacaacgttcaggaaacctcatatatattgacttttatttgtttgacagttgtgagttgatgagagtgctaatgtcttagtgaatg<br>aatgtggatgaaacaacatgtgtgtgcagttctcagaataaaggcacacgaggttgttttttgatttacagtcagggcttctgtatatcaggcttccttg<br>ttgatggctctgtgtgaaacccaaaagccccccatctataggacattttccaatggttatatgatttctaaagcctgtttctcatggttataacattgaa<br>gaattttgagtgtgggtatactattttcaaagttctatgttccttgagcacaaagaccaattctagtcatcatggtatcccaagccttt<font color="green"><u>AGGACAGTGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGGACAGTGTC</u></font>ttccagagtacctaatcaataaatatcacctggatgaatggatgtatgattgagcatgctgaagtcagtaaagcttaggtaga<br>gcagtgtcgttatagtattgacagactgcccagaagaaccccaggacttaagtgtttgtattctcattgtgtccttcaatgtgcagaaagctcatatctc<br>aaaagatcttctggccttcttcctatgacctcagctccatgatggacccgctgattacctctgtcactcttgaaatgtaaatatcatctcctatttatgt<br>gatcatgggttaaggaggcttagagataactagtcccaaatgcatgtgggtgtctaaaaccagactatcttgatgtcaagtacctagagctactgctgat<br>taccag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	471	154	NA	intergenic
0	chr9	35793109	35793399	1000249	0	-	Ya5NBC240; Ya5ACA1878; 238279; RIP_Alu_chr9_035_01	AAGGGCAGACATGCCAAATA	TCAGGTCTCTTTCCATCATCTCT	SINE	Alu	Ya5	aataacttcatgagaattcagcagaaaaccaaagctagtttcagatacagtgtggggtgatccactgggatgctcattggctatgagacttatttcagaa<br>aacctgtccaactcatgcaagattctattttatgctccacaaatccatgggcctctgagtcatttgaacatagctaaaacctagtataacagaagagtac<br>caaaggtttttagtacaatcttccttggtttctcttagttctactagtaaatgttccttttttaaatttcagttttctgaacaaaagggcagacatgcca<br>aatattggtcagagagtaaaataatgagaggaaaaacaggagataaatatgttcggagagtaaaataatgagaggaaaaacaagagat<font color="green"><u>AAATATGTTCAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAATATGTT<br>CAG</u></font>agactccactcattttatgagttcttagaggtaaaagagatgatggaaagagacctgagatatttaagacagaaagatagaaactctctacaggcac<br>aggactccttgtggcaggtaaaactcactgtcccagttataagccccagactccttgtttacccattattaccagaccatgggaataaggggagatgaga<br>gaacaggacttcagaggactagaaggagaaaaaccacaatcaaagaacagtggaagtgatttaaagtggatgaacttttaaggagtggggaagactcacc<br>ttaacaaggtcattaatgagtgaataacgaaacatccagtccaagttgatgctgtcattttctagaatatcctggtaagtgacatggaata	UCSC	<UL><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID:11042148</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	505	202	NA	intron:NPR2:NM:003995:12/22
0	chr1	239427177	239427475	1000250	0	-	pAlu1-237657038; Ya5ACA614; RIP_Alu_chr1_237_01	TGGTGCTTCTTGCTATACCATC	CAAACATTTTCAGGCTGGATT	SINE	Alu	Ya5	atagatagatagataatgtttaattttggtaaattatgcatttgggaagaatattattatacagtagtaatgttttgaatatttcaactagatcaagttt<br>gcaatctttttttttttttttggtcttttatctctttactgattgtttttttctgcctggtccatcagttaataagtatatgtatggaaatctctcacta<br>caattttgaatttttatatatctccttttacttctaataatttacctttgtatattctgacactatttattaactgtgcacaagttttaaaatgtgtctt<br>cctcatggattgactgttctatcattatggaaagtgatctttatctctagtggtgcttcttgctataccatctactttgagatt<font color="green"><u>AAGATACTTTGATTAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGATACTTTGATTAG</u></font>tatttttatggtatatatattttctatttttagtttcaacttttttatattcttatatttaaggtgagtctcttgtgtcatataa<br>ttattttttaaatccagcctgaaaatgtttgttatttaattggagtgtttagtccatttacatttaatgttattgatatattaagtttaaaatctagaac<br>tttacatttattttctaattaacccagcatattccttatttgttcttttttttttttttttacattcttttggatggattcagtattatttatttttccc<br>tttctccccagtactagctggtcagatacacattcttttaccattgtattagtgcttaccctagcttatgaaatataatacatccctgaaattcaagtc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	481	166	NA	intron:RGS7:NM:002924:2/18
0	chr1	237492891	237492892	1000251	0	+	Ya5ACA630; 14975; RIP_Alu_chr1_235_01	CCAGTCTGCTAAGACAGTTTTGAA	AGCGGGTACAGTAGGCAGAA	SINE	Alu	Ya5	accagtacacatgaattatcttacagttttcatgggataggagtgcagataagagttagctggtttctctgttcaaggtctcaaccaggtttaaatcaag<br>gtggggctgagctgtgttcttacctgggacttaagagtcctcttccaaatcactgattgttgacaggattcagttccctcaagctggagagctgtgtttc<br>ctgttttcttgctggctgttggccagggatcatcaacttcaactcctagaagccagcctcaggtcctaaccacattttctcctcctcttgcaaaatggca<br>gcttaggttttcaaggacagtaagagaatacctttcatttcgaatctctctctctatccagtctgctaagacagttttgaattactt<font color="green"><u>AAGAAGGAATTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAGGAATTGG</u></font>ctgtcccatcatgttcaaatgtctcacccatgttgaaggagagggaataatacagagtgtgcacatcaggggccagg<br>aatcttaggggttatatttttctgcctactgtacccgctcactaaaatcttttctagcgaaaagggagaatgttttcacaaacagctatgataccaaatc<br>taatcccactattattatatactcccaacattttcaaaaaaaaaaatctgagtattaggactaaatacttagaatgtattaaaatatatactaaatgtaa<br>gatagtaagttttgtttaaagttgaggctcatgtttataattcgttgcctttttcttcaacagaacatttaaaatctcctgtatatttcatggaattgca<br>aatatgatgc	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	498	159	NA	intergenic
0	chr1	77537583	77537584	1000252	0	+	Ya5ACA641; RIP_Alu_chr1_077_01	CCAACTCCAGGCTTCTTTCA	TTGTTCTCCTTTGCCCATTT	SINE	Alu	Ya5	tccatcaataccctcccattccgctgctcctcctttcctgagaaataggagtactgttaggtttgttatatattcttccagacctttttctatacttaca<br>tgcatacatacatgtatggacacatgtgcacatgctcatatacaaatgcattctaaatttttataatgacttttccaagttatatcaatgttgaatgaca<br>gtatctttttctacagaccctttccaaccagatacgattcatgtttaaaatttttgcaaacctgatgagtaaatggcattttgtgttttaaatttgcatt<br>tcatgggttactattaaggttaagtatattttcatacactcattggccatgtgtatttcttccttatgtgaattgcttgttctcctt<font color="green"><u>TGCCCATTTTTCT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>TGCCCATTTTTCT</u></font>acagactttttaatctttttcttatttatttcaaggagcatttaacatattacagatatcgtattaaacagtattaa<br>gtaaaatatgatgtcagtttatgcatcacatgaaagaagcctggagttgggcagttcacggccaggggtagctttacaaaacatttttttgaatgttccc<br>attaacggttttggatcacctattgtgctagaatgtctgcctccccttcttaggtttcctctcccaccataagtccagaaactctggtgctcagtcagct<br>taaaggcttggttctaattgttctggctttgaagagagaaaaactggaaaatatctgatgaagttttgttattgctgttgctaccacattatattgctgt<br>tgaaagcggg	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	471	151	NA	intron:AK5:NM:174858:5/14
0	chr1	88888321	88888322	1000253	0	+	Ya5ACA659; RIP_Alu_chr1_088_01	TCTGTGCAAAGCAGAGGGAT	AACAATGCCTAGCACAGGGT	SINE	Alu	Ya5	ttctaattcactttaaatggagtttacattggaaaaaaataaagacagtggagcatttgatcccatgcatcaaaaagcacttactgagcaccttggtaat<br>acaggttatatctgcatgcctcaatttctagcatgcttacataaattacctcatatgtgagctaagtaggcagataatcaatgagttattgtctgtgaaa<br>cactttaactgaatatacaatgtaaacattaagaaaaaatttctattttacacataagcaaatggggtctcaaagaagtggagagacctgcctaatctga<br>caggccaggtgtcctgactaccataaagctttgcatcacactgctttcctgtgagtctcctctgtgcaaagcagagggatatgtt<font color="green"><u>GAAACCTCTGATTTG<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GAAACCTCTGATTTG</u></font>aaagggtttacaaatcagttatagacaaatgacatacacataaaagaataacatgatgataatagtgaagatggt<br>gatgatagttgacacttttatggtacttaccctgtgctaggcattgttatacatgaagtgacccatttaaatctcttagcaatctttcaaaataggcatc<br>atgagataattaaggcacagagagatttagttacttgcctgaagttaccgggatagtgtgtggtaggattgaaatcatttgaagtcagctgcctggctcc<br>agggactatgtttgactactatactctactgcctttctataaaacagtatatggaatacattctatattcatgatctaattagtgtgttagaatgtcagg<br>gagatttata	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	478	163	NA	intergenic
0	chr1	148958076	148958394	1000254	0	+	Ya5ACA702; pAlu1-147466446; RIP_Alu_chr1_147_01	AATGCAATGCAGCAAACATC	CAGTTGCAGAGGACTCCCAT	SINE	Alu	Ya5	aaaatcctatacaaatatagcaaatgcatatttgtgtctcggttacaaacattcattttctttctttttgagacggagtctcactgttacccaggctgga<br>gtgcagtggtgtgatctcgactcactgcaacctcccccttctgagttcaagcgattctcctgcctcagccaccttcatagctgagactacaggcgtgagc<br>caccgtgcccggcctcattttcttatttatttaattttattctgcttatatattgaacattcatgttctagaggtggactgctatgaacaataatttcat<br>caaagcaacaaagcagtattcattaatacctaatgtaaattaaatgtgaatgagcaatttaatgcaatgcagcaaacatccaata<font color="green"><u>GAATTCTCAATTAAT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAATTCTCAATTAAT</u></font>tcaaaatacttcagcaaatatcttcatttcttaaaacatgcagtttcctggtatcataaaaccctc<br>aaatagttgagccctaacttccaacagagtatttgagacttcaagaaacaataaaagcagctattattaagatataccaaaatacaagaaatcataccat<br>gggagtcctctgcaactgggcagtggccatcttcttctgataaagtattttctttaattcaaccttgtgacacaaatacaagctttaacttagagctcat<br>ttttttcctctaacatttcagtttaccacatataaaattcaaaacaattttatgtgaataaatttgaatttctttaattaaaatagagtcttcaaaaacg<br>tagaggtcgatattgcagt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	558	224	NA	intron:HORMAD1:NM:032132:2/15
0	chr1	160319305	160319609	1000255	0	-	pAlu1-158748606; 52678; Ya5ACA728; RIP_Alu_chr1_158_01	ACACGAGTGCTTCTTCCCAC	CATTCCCAGAGATGTTGCCT	SINE	Alu	Ya5	tttaacctgggctgccaaatttaagaaatctagccacattaaagagccaatttgaggccaggcacagtggctcacacctgtaatcctagcactttgggag<br>gccagggcaggaggattgcttgagcccaggagtttgagaccagactgggcaatatagtgagaccctgtctccaaataaaaaaattgccaatttgaaaatg<br>tagttacagtggaggctatgtgtgtttatggaaaatagcatggactcaagataatatgttatctgtcacttggcccacaggagacatgaatcttcctctc<br>cgcagaacaataaaatgcttctacacgagtgcttcttcccacccaaagaaaccaaaagaaaaagcaaagagtttacagtcaagat<font color="green"><u>AGAAAAAAAGGACAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGGGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AGAAAAAAAGGACAC</u></font>aaccaaggagcttttccattgtgcgtggtggactgagatttccaatccaaaaggcaacatctctgggaatgaccttttca<br>gcgttttgtactctaccagaggcaccatggggcctctgggtggagagaacttgtcctcaaaaatagaggtgggccaataaacatatgcaaaaaaagctca<br>acatcactgatcattacagaaatgcaaatcaaaaccacaatgagataccatctaacaccagtcaaaaggggtattactaaaaagtcaaaaaataacagat<br>gttggcaaggttgtaaagaaaaaggaacccttatagactgttggtgggagtataaattagttcagccattgtggaaaacagtgtggcaattcctcaaaga<br>cctaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	469	149	NA	intron:NOS1AP:NM:014697:1/10
0	chr1	208361944	208362245	1000256	0	-	15439; Ya5ACA759; pAlu1-206934322; RIP_Alu_chr1_206_01	CCCACAATAAACATGTGGCA	CAAGCAGCTTAAACCAGGCT	SINE	Alu	Ya5	gtctgtttttttgtacagccagcatgctaagaaaggttttacatttttaaaaagaattgtaaaaaaaaaaaatgcgacagagaccatatgtggaacctaa<br>aaaaaaaaaaatgaactctctggcactttacagaaaaagtttgccaacccctgctttagacaatgaaatgtaaatggaagtggcatgtgtcaattttggg<br>caaaagctttaaaagacaaggattagttttctatgctctctgccatgacaaccaagaaagtttcagaaagaacctgcccaatcagtctggatcttacagt<br>gaagaaaacatggaatagagccataattgacccacaataaacatgtggcataagtaagaaataaacctttgttgtgggcattt<font color="green"><u>AAAAGTTTCAGGATTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAGTTTCAGGATTTG</u></font>ttacttcagaatagcctggtttaagctgcttgatatgtatcaatgtaatatgagttactacgcatgcctgaaaataataaa<br>agtgcatttatttaaagaatatttataattcagtcatcttaataattactcagaatatatttctttcttcttttttttttttttgaaatggggtctcgct<br>ctgtcgcccaggctagagtgcagtggtgcgatcttggctcactgcaagctctgcctcctgggttcacgccattctcctgcctcagcctcccgagtagctg<br>ggactacaggcgcccgccaccacgcctggctaattttttgtatttttagtagagacagagtttcaccatgttagccaggatggtctcaatctcctgacct<br>tg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	421	101	NA	intron:SYT14:NM:001146264:7/9
0	chr1	216852554	216852856	1000257	0	-	Ya5ACA769; RIP_Alu_chr1_215_01	CCTGTCATTGATGAGTTTGAGG	GCATTTAAAGACCGCAAAGG	SINE	Alu	Ya5	tgcccaacaatataattgtctcaggaggcacaagtgactggaaaacacaagatcatacacagcacctccttcctaatcaaacactacagaatagtaagct<br>taagctcatataaacctttgcaaattttcaaaaaattctatactccatgatgctgactcaatacaatgttttcgtgactttgttttaaaaatgatagggt<br>atcagctttgtattaggtgaaatatacctgccaggtatatatgttaggtaaatacacctgtcattgatgagtttgaggaatgaaaaacacagatccttgc<br>taaacaatgtgaagagttctgtaactgagatatgaataggggattataagagtgaaagaagatagccaaagaaaattatctgg<font color="green"><u>AAGAAACAAAGCTTTTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGTGCCTGTAGTCCCAGCTGCTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGAAACAAAGCTTTTG</u></font>cctttgcggtctttaaatgccttgctccaaatactgtgtgttgcttgctgaaaaaaaaaaaaaaaaaaaaaaaaaatcag<br>tccaattcagtctttaccaagctattttcttttttttttctttaactatattgagtcagaccatgacacaccccactggccctatgctcaatgccttcct<br>gggtccatccactcacccatgtcccagaccaaactgtgccctggcacagaaacctgagtctttcaaccaacacttcatataacatgcaacattcacctag<br>gagtttagtaagaggggatcaccttagccagacaaccagaattgtggctgtgactggaaggaggaggagagaaacaggaagaggaaaaaggtggaggaga<br>tgg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	484	164	NA	intergenic
0	chr2	206439445	206439750	1000258	0	+	Ya5499; 9131; pAlu2-206695121; RIP_Alu_chr2_206_01	TCCACCAATTTGAGCTGTCA	GCTGAGCTGGACTTGGATGT	SINE	Alu	Ya5	catctcttctgaatggtcagttcaattaccacactgatggttaaatgtttttaccaacacccctgggattataaagattaggagggagaaatatgccaac<br>agtactggaaatggtcatgccacccgtcctgtcattgttaaaaaatcattttgcctttgattctgggaagcacacgcctgggaatactccccaggcctct<br>cacttgaccccaatagaactgtcccttttatgccaccaaatgagcttcgtgattagtcatgcctgtttcagctggctaagtgcccaagcagtgcctgagg<br>ctggtccaagtgtttcttccaccaatttgagctgtcaaatccactcattttcctaggttagtagtggcagtacagtcatcctc<font color="green"><u>AAAAGAGACATTTCCTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAGAGACATTTCCTG</u></font>agggccaaggctcacgtgttccctagaatcacatccaagtccagctcagcctggtgtgatgtaggctggaaccatga<br>ttaggaattcagagaagcaaatccagctgctccacacttggaccattccactcctgacgcttgttccaagttatagctgacaggctgcctatgttttcct<br>aggttccccatccacagatttagataagagagaggtgttcttgctgtagtcattgactttataatttgggagttttcatataattgggggtttaggtttt<br>tttcatggttcaagctggtcccatattttacatccctctctctccctattagggctcaggatgctgaattgtgattttgcatttgcacatttgtatcctc<br>cactgg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	456	133	NA	intergenic
0	chr2	208275470	208275775	1000259	0	-	Ya5ACA784; RIP_Alu_chr2_208_01	GAAAGTCCCTCAGGAAACCC	GGGCATACCTTGCTTCAAAA	SINE	Alu	Ya5	cactgcaacctctacctcctgggttcaagcgattctcctgcctcagcttcccaagtagctgggacaacaggcatgtgacaccacgccaggctaatttttt<br>ggtatttttttgtagagacagggtttcaccatattggtcaggctggtcttgtactcctgacctcaggtgatctgcccgccttggcctcccaaagtgctgg<br>gattacaggaatgagccacggcacgggcctatcattgctacatttaactagcaattaccatgtgaatgtgtactgggtattgctttacatgattaactaa<br>tacccacaaaaatcccaggatatgtaatatgaaagtccctcaggaaaccctccaccaagaccaaagacctgcctaactccatcacataagaatttccct<font color="green"><u>T<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>T</u></font>ggatggaatgagcagactgtgtgctatggcctgtttttgaagcaaggtatgcccaggtctgggtgcccttccccagaagtatcaggggaggag<br>tctgcaacatctgtaaactctgcttagtcctcttttgggtagaaatcatactcttctggcattttatgtttctataaaagaatagggagaaacctgcccc<br>tcagagttctcagtgaggtagaagggccacaattaggtagcaattatgattaggtatctatatagaggaaaggaacaaacagggtcagaaaaataaatat<br>tccctattgatatcctaacaaggccttgactgaaagcaaaacaaacacagaatgagcaatgcagcttctgaggctcaagacaatttggataattaattat<br>aattaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	431	115	NA	intergenic
0	chr2	28207457	28207751	1000260	0	-	Ya5ACA791; RIP_Alu_chr2_028_01	GGTATCCACTGATCGCTTAC	AGTGATTCTCGGGTTTCAG	SINE	Alu	Ya5	ctcccttatttacccatcctctccttttctgccccaacttatccctgctaaacactcactcgttcttctcctatgaactgtatcaataataataatattc<br>atggctattacttgctgagtgtttactgtagtgccaggcactgtgattaatgctttatgaacagtattaatataatcctgaaaacaacactaagaaatag<br>gtattattatgtctattttatgactgaggaaacaagctcagagaagttacattttgtgacagctggtgagtggcaggaaccaggtttaaactagatctgc<br>ttgactcagagcccttgccttatgccacgtcattctactgcctctggtatccactgatcgcttactaatatgggtcagtattttcaatt<font color="green"><u>AAAAAATAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAA<br>ATAATA</u></font>ataataataataataataataaaacactctttggggccaggcactgtggctcatgcctgtaatcctagcactttgggaggccgaagcgggcaga<br>tcacctgaggtcaggagttcgagaccagcttggccaacatggtgaaactctgtctctaatgaaaatacaaaaaattagctgggcgtggtggctggtgcct<br>gtagtcccaggtactcgggaggctgaaacccgagaatcacttgaacccagaaggtggaggttgcagtgagccgagattgcaccactgcactccagcctgg<br>atgacagagtgagactctgtctcaaaacaaacaaacaaacaaaaaacaaaaaacagaaacattctttgggaggccgaggcagcagaatcacttga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	598	230	NA	intron:BRE:NM:199191:7/12
0	chr2	38924995	38925323	1000261	0	+	pAlu2-39029100; Ya5ACA828; RIP_Alu_chr2_038_01	GTGAGAACAGAACAAAACAACACA	CCAACTTGAATGCTACCTCCA	SINE	Alu	Ya5	ggctattctttcagcccaatcattcttgttttatgtttcatttctctatgatttcctataagatttcatttgcataaagtgtattgtagctttttaaaaa<br>aaagatttaaaaacctatgattctataatcctgacttcctccaaccccttctctccattaaatgccaacactcttttcacattcaccgtttgtttgttta<br>ttgaatatttactgaatgcctattttggacaagggactatggtgacggtggtggtatggtatagaaaaataagtatactttcaaggagcttacaaactag<br>tgagaacagaacaaaacaacacactatactgtaagacagaaataaatgttattagaggcacaagaaaagtattctgtgacttctaat<font color="green"><u>AAAGAAATGATTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAATGATTA</u></font>atttttaatagcagaaaataggaaatttcatggaggtagcattcaagttgggtgttaa<br>agaatgactagagaaggaagtgggaaaaagaaatacagatagtaatagtatggcatctttcagaaataacaagtagtctgagagtgctaaggttttatag<br>gtaggaaactaaagaaggaagggaacttaaatattggctggggtcagatgatatgggcctttagtgtccacaaagtgtgagtgatagggaaccaatgaaa<br>atttctaagaataggaggaatgtgaacaattctatgtttaaagataattctgagcctgggcaacatagtgagaccttgtctctactaaaaataaaaaaat<br>tagccaggcatggtggcacacatctgtag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	494	152	NA	intron:DHX57:NM:198963:11/24
0	chr2	113913923	113914230	1000262	0	-	Ya5ACA864; RIP_Alu_chr2_113_01	GCTGAGCCTTGGTGAAAAAG	TCACTGAATTCCCCTCCATT	SINE	Alu	Ya5	atatcttttaggtcatattcctttcaaagctttttaagagatgaaggcttatatttagagtactttaggaagctcaacatcacaaaaatatgaagtatag<br>aatgggagagacttagggcaatgaggaaaatcttaaaaccagtccaagcctgagacagaggccctgaacatgagtgtttcacagggcagtgatgtgaaaa<br>ctgaaaggaaagggtgaatgtaagaaatcttctaagagaagatttactagggctttttaaccatattatgaaaaaaaaaacactttaagacatagctcat<br>tcattcgaaggtttctaatacgttacagatttatgctgagccttggtgaaaaagtgaacaagatagtctctgccttcatagagcttagaaat<font color="green"><u>ATTAAGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGCAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>ATTAAGGG</u></font>aaggggggaatggaggggaattcagtgaataaggaggcaattatgtcacagggtgacatattcaataggagatgcacaaaatgc<br>tatggagaacctaagagggacatctagccagaggagtcacagtaaaaaagtacctattccaaggggctaaaacacttggcacctttgaagtaacattagt<br>tcattgtgcggggccaatttggcaggctggaaaggttggcaagatccagatgctacaggtccttgtaattcatgttaaggaatttggattttaacccata<br>gggatgccactgaaaggtgtgacgcagtcggattgacatttataaagatcattaaggctaacatgcaacgaataaattaaagggcagcaagactccagat<br>tagtcagg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	410	94	NA	intron:CBWD2:NM:172003:1/15
0	chr2	55937047	55937347	1000263	0	-	Ya5ACA877; RIP_Alu_chr2_055_01	AAGCCTCCCTGGAAAAGTGT	TCCAAAGGATGTTTGCATGA	SINE	Alu	Ya5	cgtaaacctcgttgttccaaacactcaaccaagatcctgactcctaataatgaatcatgtggtgaaaaatctcactccatccatcagtttatttacctaa<br>ccttttttctctctttccttactcctcttcataaacatggatacaatggctgtttaaacaccatatctacttttaaggaatatacagtttattggagaga<br>caaagtaatcaaataatcttacagacgaatgtaattttagaaattacatgttaatatactttgcacattgcaactgtgacacgtgctacaaaaaaaggaa<br>tgtggtgctacaggagcctataaggagaaactcaaatgacctactcaagcctccctggaaaagtgtctcttgaactgagatctt<font color="green"><u>AAAGATGAGTAGGAGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGTCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAGATGAGTAGGAGT</u></font>taactacataaaataggtagggaaaaacattcagaaagggatctgctcatgcaaacatcctttggagggagggaacattttct<br>gggacccagtccaatcaaccaaaataccagtgtagctggagccacagataaggctggctacagtataatctataaagagtaaaaacacaactttaaagta<br>aagaagtagtaaagagcaaagtaaagagtaaagacacaactttagagtaaagaagttgtgtctttactcttatatcaatgggaaggtatttaaatatttt<br>aagcaggtaagtaacaatcagattcacactttggaaaaattccgtttagcctggagataggttggaagtgggctcagatggatgcaggttagaaagctat<br>t	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	437	120	NA	intergenic
0	chr2	134176750	134177041	1000264	0	-	pAlu2-134482500; Ya5ACA891; RIP_Alu_chr2_134_01	GCCAGACTCCCTCTCTGATG	ATGGTTCCATCTTGTTTGGC	SINE	Alu	Ya5	attctctgagcagacctgggctggtgcataaaccatggctctctcctcctcaccattttagttactgctaacttagaacacaccacctgtctctcacctt<br>cactgctgctgccacttctctgtttccattccagccccaaccattcactgtccacacaacaattaaaaagggatcattttccagtatgaatggaatcaca<br>tcccttccctgatcaaaagcctcccagggcttcccattacttttaagaacaaaatccatatgagttatttaaggcctgcctgacttggccccatacgcct<br>cttctccttctgtttccacgttctgccagactccctctctgatgcacacaggccccctcccaccttcctcctccagagatagctt<font color="green"><u>AGAAAAAGAGACGAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AGAAAAAG<br>AGACGAG</u></font>tgaggagaacgttaagcaaggtgagaactatccttcataccatgaaaataagcttatggtaagccaaacaagatggaaccatggatttaaagc<br>tttgtggatcatgatctgcagtaagcaaatgcagtttacacacacatacacacacacagccaaaaagagtcatttcattaaacaatgtaatatggtctta<br>tgtggtatatactctgatattttcttatataagtaatatagtaatatattacttatatataaaatatgttatacatgaaatatatataaatataaaaaat<br>atataacatattttatataacgtatataatatatataagtaatatatatattacttatacagtaatataaaaatactgacttttccatgcta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	465	158	NA	intergenic
0	chr2	41796104	41796419	1000265	0	+	Ya5ACA912; RIP_Alu_chr2_041_01	CCATGTCAGTAGCTTTCACG	GCCTGACAAAGATGAAACTG	SINE	Alu	Ya5	taaacatcagcactaaaaatacaagtagttacaagaagtggcctccaggaaccagaactgagggaagaagctacacgggactggagccagttgcttttct<br>cagaaacccttctgtaatatttgaatcattatcttaagcatacctttctttgcaaatttaaaaagattaaaatgtcataaatgtagaaagcaaataaggc<br>cataaaggtaaaaataataataataataattgtgatgagagggcaggagacggggtgggagggaatatggctgtgatggacatcatccacgtgcaggaca<br>gaatcacagaggccaccctgtaggtcagcctggcagcattcagcgtccttgtgggctggcccatgtcagtagctttcacgaacaaaacac<font color="green"><u>AGTCACCCAG<br></u></font><font color="red">GCCAGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTGTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGTAGAATGGCGTG<br>AACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGACACTCTGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAACCACACACACAG</font><font color="green"><u>AGTCACCCAG</u></font>tctcatttcagtttcagtttcatctttgtcaggcccagccttggtctccagtcctgactcttataatgaccttt<br>ctctccaccccacggcccaatagtcacatcttccacattgtcctagaaatcatgtcatttccaatttctagaaggtccttggcatccaaagcaattctgg<br>ggtcctgagtcaacatcttcctcctataacctctttctctttttcctgtttttccaaaaggaaaccaatgctcctaaaagtattttcttaagcaagctct<br>cagttgcagagagctctgagtccctaacatttggaccttttactgttttctcacatgttaaacactgtatcccaatgtctaaaatagtaagaaggtcaat<br>ccacacagaaaatgca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	400	74	NA	intergenic
0	chr2	161503857	161504170	1000266	0	-	pAlu2-161759537; 8756; Ya5ACA914; RIP_Alu_chr2_161_01	AGCATTGCATTTTTGGAAGG	TACATTCTTGTTGCTGGGCA	SINE	Alu	Ya5	attcacccaacaattcgccaagggctacctgcattgtcattgcatactataagtcagactgaaagcagggaaggcaggtgaagctctgccttccccactc<br>atctcctggatgggtagagcaatgatgtgccacacctcatttcctgttatccccacttcagggcccccggcctatcacaactgcaaaccccaaacttctc<br>tctatagataatatactactagaaaaatgtctactgtccccttacaatctagtaaattaaaatatattccctgtccctttagcattgcatttttggaagg<br>cttctcacttcaaatttggaaaataacaaggaaatgtcaatagtctttaaaaagtctccaaaagtacttcttgtagcgtcagcctctctt<font color="green"><u>AAGAATCTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAATCTTC</u></font>tacttgttctctgcacttttagaggcatgcccagcaacaagaatgtaacgattgcattttaacacttcattcattt<br>tgctttctaaaagaagattaaatgaaggatattaagtcccctccacatgctaagaattctgaggagtaacttcaggatgaaaacatatatgatcctgctc<br>ttcttccctaggtatccagatgttgaacttggactgtgtaagtctcttccagatatagtttggatatctgtccccactaagtctcatgttgaaatgtagt<br>ccccaatgttggagtcacagcctaatgggaggtgtttggatcatgggggtggatccctcatgaatggtttgggccatccccttggtgatgagtgaggtgt<br>cactctgagttcac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	491	167	NA	intergenic
0	chr2	169103724	169104020	1000267	0	-	pAlu2-169359396; 238889; Ya5ACA921; RIP_Alu_chr2_169_01	GAAGTTAATGAGGGTGCCCA	ACTGAGCAGAGTGTATGACCG	SINE	Alu	Ya5	gactgattttgaaagctaatatgcaggtgcatgtttagacatatacatgtgcatgtgcctgagtgagcaggcatatgtgcatgactgtatattgttaaat<br>cctacctaagacaaaactgtttcaagaaaacaaatatttagtggaatgaaggccaggatggagaaaggggactgctatttattgacagatactatatgcc<br>aaaagctttgcaatgtttaattcttttttagatcaacaataaccctttcaattaaatatttatttcatttaacagaaatataaactaaagctcaaagaag<br>ttaatgagggtgcccaaggtcttaaaggtagttaaatagcttagacaaaatttagatccgatcaatcataacataatctattaat<font color="green"><u>AAAAACAATATTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAGACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AACAATATTTTC</u></font>cacactccctaaaataagaaaagtaaattaaagaggtattgttaaaatacttgtgatacggtcatacactctgctcagtaatcccact<br>tttaggtatttatctaagacaatctgtcagacaaagaagaaaggccacagatgtaaagattttcacgcacaattatctgcagagggaaaatggcaaatag<br>cttaatgagtcactacaaaatgactcagtgagcatctattatgtatcagccctgctctaggtgttggggatgctgcagtgaacaaaatcccatttttatg<br>gagcttacattctagcagagggagattaaaaataaaccaagcagtgtatgctatgccagatggtgagaagtgctagagagaaaaatacagcctgcta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	495	183	NA	intron:LASS6:NM:203463:1/10
0	chr2	165975770	165976078	1000268	0	+	Ya5ACA923; 10935; RIP_Alu_chr2_166_01	TGAGGCTACTACCCCTTCAA	TGGCTGTTCAGAACTTTCAC	SINE	Alu	Ya5	tcaattaacttataaataataatgaattaagtttcctatttcagccacagttattctctattagctgaaatgctccttctctcgcgctctctctctctct<br>ctctctctctctctctgtctctctgtctttccctctcttattagatttctacatataacttttcctgtttcagagggaattaattttttttcccagtata<br>catcccttctttggagaaggaagattgtttaagattggctttattgactctactgcactagagacaaaacagaaataagtaggcaaaggtatttatgtgg<br>aaatgttttaaccattagtattaggtgaaagttctttatagcttttagaatattgtcctgaggctactaccccttcaaggggctta<font color="green"><u>AAAGCTCCAGACCC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAGCTCCAGACCC</u></font>agcttttagtgaaagttctgaacagccaagttggaaagttatttttttaagctgaaagtaaaaggtagaaaaatgga<br>tagtataatagaactagaatattttcacttcttatttcaggggttgttttttacctgattaccctaattgatcttataaaaatgtgactatagtttgtgt<br>tgttgtattattatttttgtaataattataataatattttttgaagatctgaacttcaatatttgataatacaataataacatttgaatagctcatctct<br>atagagtaattcattacttcaaagtacaaaatcggaggaagctgcatggcatattgaaactcctgtgtttatctgcactaatcacttcctggtaccattg<br>tgctcaatg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	393	70	NA	intergenic
0	chr2	183958227	183958554	1000269	0	-	pAlu2-184213921; 5056; Ya5ACA937; RIP_Alu_chr2_184_01	TACTCGTGCAGCAAAATCCA	ACAGCGGAGTGAACGTATCC	SINE	Alu	Ya5	catgttggtcaggctggtctcaaactcccaacctcagtactgcttcattaccactcccaatcacaaattctactgatggttaatttgtaggctgagatca<br>caaatcatcatgaaacacaggtggtattctagagtttccttgtgatacaactctgttgagtaggcttcaattctgttgtacttgcaacatttgaaaacta<br>aatggtaagatgacttgcaagtagctgttgaataatgaatgatgtggtatagccacaaggatacagtaattaatatttaagagtgacaggctcacctccc<br>tgggaatggagcagaaagtccagcacaatgagtggctatataaaaagattactcgtgcagcaaaatccagaagctaaactctagt<font color="green"><u>AAAAATCCATAAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATCCATAAACA</u></font>actgattcgtcaaataattaatttccttcctttatttagtgtacaaagtatttttgg<br>gtctacagtgttttgaaaagggatacgttcactccgctgtttttgtatgagacccacttctacacattttcttgctacttgtaagtagtaagtacaaccc<br>ctcccaaatgttggggtagcatcactaatctgattagtagagagggttcagatgactgaggggtcactaatctgatgagtcagggcccagaacatgcact<br>gggtcatggtttgctagaggttgaggttattgggccttcaagtcagcactctgaaggatggctgtctcttctattttctgtcccaaactttttcacacct<br>cctctacatccccaactgtgtcatcagt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr3	124719448	124719751	1000270	0	+	pAlu3-124517886; Ya5ACA1011; RIP_Alu_chr3_124_01	CGGTCCCTGACCATAGATGT	AAGCAGTCAGTGTGCAGCTC	SINE	Alu	Ya5	agtcctttaactccagcaatgatagcccagagaacaatattctcagcaattggtgactgtggccccaagaaaagagctggggcctactcaacccacagtc<br>cgcccccaaatctccaaatgcagtatcccaatgtgcccacccaacactccagaggggagaagatttaccactgacagaaaggtaactgaaatgtcaaaag<br>aacatgaaactggcaatatattttgtgaaatgtcatggttctttctgttctatgacagtgtaataattgcaaaaatttcaaaaggtggggaaaaaaagct<br>atgaacaccatctcttggaccagaaatatcaaaatggtgacctacggtccctgaccatagatgttctgtttgggcttgtacagtgcttt<font color="green"><u>AAAAATATTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAATATTTG</u></font>aatcagtttttaaaaattaggggatttctcattttaaaaatctagatttctgccttttctcaaaaaaattagattttgcactact<br>gaatctgtctggcaatctctagctgagctgcacactgactgcttgtgtgagatggcatgcaccctccagtcaccatgcttttcttccatgttcttttaaa<br>atcctgtgggacagacctctgccgccagtagatagcctctgctacagattgtaaagtgctacacaaatgtcatgcaacatatttgaaaactctaaagttt<br>taaaaactttagttatttaaaagtgttatttaaaagtctgattagtttttacacttgaggctctgaacatacttttctttaaggcaatgaccttggccaa<br>agat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	500	185	NA	intron:PTPLB:NM:198402:4/7
0	chr3	23061856	23062138	1000271	0	-	Ya5ACA1052; RIP_Alu_chr3_023_01	TTTCTTCAGGAGCTCTTTTG	CTCAGCAGAAACCCTACAAG	SINE	Alu	Ya5	ctgagtcttggttctttatccagcttgccactctgtgtcttttaattgggccatactatgccccaatactatgcccttttagttggggtatagtattgtt<br>atgtacgaatttgatcctgttatcatgatgctagctgattactttgcagagttgtttatgtagatgctttatagtgtcactgctctgtgtacttcagtgt<br>gttttgtaatgaccagtaacagtttttcctttccatatttagtgctttcttcaggagctcttgtgaggcaggcctggtggtaacaaattccctcagcatt<br>tgcttatctgaaaaggatcttatttttccttcgtttatgaagcatagtttggctggatatgaaattctgagctggaaattctttccttt<font color="green"><u>AAGAATGTTGA<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAG<br>CCGGGCGTAGTGGCGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATC<br>CCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGTTGA</u></font>atattg<br>gcccccaatctcttctggcttgtagggtttctgctgagaggtctgctgttagtctgatgggtgtccctttgtaggtgacctagcctttctctctggctgc<br>ccttaacagttttttctttcatttcagctttggagaatctgataattatgtgtcttgaggatgatcttctcatggagtatcttactggggttctttgcat<br>ttcctgaatttgaattttggcctgtctagccaggttggggaagttctcatggatgacatcttgaaatatgttttccaaattggttccattctcccttctc<br>ttttagctaccccaatcagttgtagatttggtctttttacttaatcccatatttttcagaggttttgttccttcatttttctt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	493	199	NA	intergenic
0	chr3	126972106	126972403	1000272	0	+	Ya5ACA1063; RIP_Alu_chr3_126_01	CCCTTTATGAGCAATGCGAT	CTATGCCCAGCATTTTTCA	SINE	Alu	Ya5	aacacttggggtcagaccattcgtggtggtggtgggaggggcgtcctgtgtattgtaggatggttagcagcatctctggtctccatcctctaggtgccat<br>cctaccctcccagctatggctaccccagatgtctccagatgctttcaaatgctgtgggacaagggagtggtacatgagcaaaaccaccccagttgagagc<br>cattggtctacacttgtggaaatgtttgagggtgagagtgtcgagctcgggtccctgctgtaccctttatgagcaatgcgatcttggaaaattaatacga<br>ctccaggggccttagttttctcatctataaaatggagataaatgagatacactttcataggaaggttatatgggatttactgagataat<font color="green"><u>AAGACAGTACA<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>GACAGTACA</u></font>tgaaaaatgctgggcatagcatttatttatttttatgttttttaaagacctaatcttactctgttgcccaggctggggtgcagtggcatga<br>tctccgctcactgcaacctccacctcctgggctcaagtgattctcctgcctcagcctcccgagtaggtgggattacaggtgcccaccaacacacctggct<br>aatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctaaggtgatcctcctgccccggcctcccaaggt<br>gctgagatcacaggtgtgagccaccacgctgggctgggcatagcattgtaacacagacaaagcacaaaatacttgggcaatatctttttacatttggc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	466	157	NA	intergenic
0	chr3	49469292	49469609	1000273	0	-	pAlu3-49348609; 22534; Ya5ACA1134; RIP_Alu_chr3_049_01	TCCACCTACCCAAGTTTTGC	GACAGCGCTCAGTGATGGTA	SINE	Alu	Ya5	tgctggagacctgtagctttctggaaagaccttccacagagtcccattggcaattttgagcccaaattccacaagcccacacactttcaaggacatgcaa<br>ggatgtccagcctcctgcaggataaattaagccccaccctcaccctaccctaagcaacagggacctccatgtgagaaggccacatggaggaggagttggt<br>caagacttaccagtctcctcctctctcctcgacccccatagatactctcacttgtgaaggttcctcttccacctacccaagttttgcccaccccactcaa<br>gaacaacacccccaagccttcctgacatctgactcctcattgtctaggaaacctcaagcttctagagggcaatgattgcccttgataat<font color="green"><u>AAGTTACCATC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCGAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTTACCATC</u></font>actgagcgctgtcctatatctttggcacacgatatctcaccatgccttccagcaaccctctgtcacagtta<br>ttattggccccacgttacagatgagaaaactgaggcccaaaggttaagtcacttactaaaagtcccatagccagtaagtggccaagctatggatctgtgc<br>ttatctttgtaacctttactgggcctggcccagaataagaattccactaatgcttgctgaatgagtcaatgaatggatacaattccatcaaaactatagc<br>taccaggacctatccaaccctagggcccaggacacagaggccttggagccatgtaaggggcttccagaccagtccaggaagaacaaggctaggtttctgt<br>ccctctcccaccttgggc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	475	146	NA	intergenic
0	chr4	184540698	184541003	1000274	0	-	Ya5ACA1172; pAlu4-184888050; RIP_Alu_chr4_184_01	CTCTCCACCAACAAAGAATC	TGCTAGGATTATAGGCATGAG	SINE	Alu	Ya5	caaccaaatggctttctgtttgtctttcatgatgaaattccagaatggtttccctaaggaatgaaacgtgaccaataaactcccagaatctcaaaaaaca<br>ccagtaaaaagccaccttccctgctgtcctcagcatttgacacatacgtggccagtgtgtgtcctcacaagcctttcctttgccctccatcctctgattc<br>tgctggaggaagtaccaagtgctttggagccatggcttcataaccagggtccagttgctccctctccaccaacaaagaatcttaatctttcttttttttt<br>tctgtgttgtacattttttattggtatggataacttattaaagtaacaaatctgaaaacacattttgcttttgctggtggtgg<font color="green"><u>AAAGAAAGTGCTATGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAGAAAGTGCTATGTT</u></font>aggccgggtgtggtggctcatgcctataatcctagcagtttgggaggcggagtcatatggatcatgaggtgaggagt<br>ttgagaccagcctggccaagatggtggaaccccgtctctgctaaaaatacaaaaattagtcagccatggtgatgggtgcctgtaatcccagctacccggg<br>aggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccaagatcgcaccactgcactctagcctgggcgacagagcaagactcca<br>tctcaaaaaaaaaataaaaaaattaaaaaaaaaaagtgctgtgttagagaggatctaagagaaaccagaagtcatttgcaaaaaataggcatatgatata<br>gtctgg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	499	176	NA	intergenic
0	chr4	95717996	95718303	1000275	0	-	Ya5ACA1197; pAlu4-95891648; RIP_Alu_chr4_095_01	TCCATAACCTGTTTGCTTTTACC	TGCAAGCCACACAGAAGACT	SINE	Alu	Ya5	tttattttcagagtaatcaagtttttattgtcctaatatctagacacttgaaatcaagctatttttaaatacacccagtttgcaaatgcaaagcagtaac<br>ttgcctgaaaatgatgcaaaatatgtagtaatctcttttctcctgaattttgcacagtgctggacagcaggcatgtgcttaataaacactgccaattgat<br>taagaagccatcataaaggctctataatactgcctagtttcagtttaaaaataataagctttaaatcatttcaagttttatcaccaaagctgtgcttata<br>aaacacaaaacttaagcttggtattttcagatgttttaaatgcagtacttttccataacctgtttgcttttacctctacaactttctattaa<font color="green"><u>GAAGAGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>GAAGAGTT</u></font>ttttatgagatttcaagaagcactagtagaaaagattttagttaagacacttccttcaatggatgtttttctactgaacttgga<br>atttaataaacatggtaaacttctgttttagtcttctgtgtggcttgcatttgacagacagcatctttctttgcaggatatctactctgattactcgaaa<br>atctattgtcttaaaataaacatactaaaaaaaaaaaaaaaaaaaaaagattacgaccaaacactcctgaacactccatactgtttctcttcctcacatg<br>aaagaaacaataacattcttttttgaaggatactagttttcctcaatatatatatatatatatcagaactttagaaagccacccacaacctcaagaccgt<br>atgtacag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	498	182	NA	intron:PDLIM5:NM:001011515:5/9
0	chr4	100289328	100289627	1000276	0	-	pAlu4-100462978; 12480; Ya5ACA1202; RIP_Alu_chr4_100_01	ATCAGCTTTGCCTAAACCTA	GAACCTTTTCTTGGGGTCT	SINE	Alu	Ya5	ggcaagcatgaaaagtgaaagtagtgaagcgcttgcccagccatacaaggccagcatagagctgcagtaaaagcaaaggcatcaagctggaaaatgatga<br>gaactatagcttttccatacctggcaaaggggatcaggtggattaatccaaagcacacaatggcaaagatcttgcaaggctacttccatttttattatac<br>cccagggactctaacctcatgtgcctagtctctaacctgaatatcagctttgcctaaacctaatagaggacaccaagatggacccaacttaccagagggg<br>ccaatgagtgttgtgcagactgaatttccttggcattaggtaacatcttaaggtccttttatagtgtccccagaagatgatgct<font color="green"><u>AGAAAGGGGTCTTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AGAAAGGGGTCTTTTC</u></font>aagatccagaccccaagaaaaggttcttggatctcacccaggaaggaattcaaggtgagtctcagatttctgtgagaagagata<br>gtttactgaaagccactctgtcacccagtaaagcatcctcaaaatgaaagcagaggaatgcactgtctttaagtttttcttatataggggtcttgcctat<br>gtaaagattaaactaagctgtgcctatgtgcaggtgggctgacagcatgactaaatgtattattctactgatttaaagaaaactatccttgatatcttaa<br>tgtgtaagtccatcgaagcataactatatcttgaaagcatatattgttataggtgttgtaacatctggacttttctgttgtaggactttgtccttgcagg<br>	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr4	111602671	111602981	1000277	0	-	pAlu4-111776324; Ya5ACA1217; RIP_Alu_chr4_111_01	TTTGCCATTTTCTTGTTTGA	TTTCACCTGGTTCTTTTTGA	SINE	Alu	Ya5	catctactcaaagaacccacagatttcatcacgagtatgaattttctcctgagagtcaaggtcaaaactatgcctacctgtgtccacttgcatattccac<br>caacaattcagttggtctaaagctaaagagtatcactccccacagaaacactgtagctctgcactccttaccatgtttcatttctccatcagcattacaa<br>tcattttcctcagtatcaaccaagaccttccctctctctcacagacggctagatatattataggtgcttgtcaatttgtagcttctctttctcatctctt<br>ggcactttgtataggttattttgtatagctttaatttgccattttcttgtttgaattttaaaaatccagagcagcaccgattaat<font color="green"><u>AAGAGATAGTGTGAG<br></u></font><font color="red">TCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAGATAGTGTGAG</u></font>ccatagccatatgtgtaaatataaactttcttagtagccacattaaaaattcaaaaagaaccaggtgaaaataa<br>ttttaatattatggtttatttaacccaatttatctgtctgaaatattattgtttcgtgtgctcaaaataaaaatatgtacttaatataaaagttaataat<br>gtattttacatttgttggataacatcaaaacctagcatgttttatgcttataccacatctcacttaggactaaccatttcaagtgttcaatacgcacatg<br>tggccagtcgctgccctagtgaacagcacggctctagagctttaagactatcttatgcttgcttgtgttcatgacattttgtacaatgtgtagcacaaaa<br>atgtgtttggt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	462	136	NA	intergenic
0	chr4	117470937	117471246	1000278	0	-	Ya5ACA1233; Ya5-MLS47; RIP_Alu_chr4_117_01	CACACACTATCATACCCGAAT	AGCAGTTCAGAACCATCCTA	SINE	Alu	Ya5	atcatacatttcctttttcaccatttttccaatattctacctaatatcttgtacatgtgctactactatgcaagttccatctgctactcgtcaatttgtt<br>gtagttgagattctaagttgcctccttaacatgaatattgcctttttactttgccattatcagttcttcagaatggagagtgttattctatatttataaa<br>ctatgggttattaatttttaattttttaacttttatgttggagagacctttctccgttgccaagactgagtacaatggcacgatcatagatgactgtaac<br>tttgagcttctgggatcaactgattctcctgcctcagcttcctgagtagctaggactacaagcacacactatcatacccgaataagctttta<font color="green"><u>AAAATTTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAATTTT</u></font>gtagcgataggggcttattacctaggatggttctgaactgctggcttcaagtgatcctctcaacttggtttcccaaagtact<br>gcaattacagggttgagtcaccatgttaagtctatgtttatttgtaatatttgatattatcaaattactggatatttataatacatatgtaatttcaaac<br>tgtagtaataaaatgaatacctgagtacataccacttaatttaagatcttatcattttaatatctcatcaaaatagtacaaaatactgtagagaaatgaa<br>agcataatggttttatcaatttttgtttctataaaaaattaccttgactgggtaattgataaacaatataaatttattgctcacagccctggaggctgag<br>aagttcaaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	398	80	NA	intergenic
0	chr4	120236701	120237003	1000279	0	+	Ya5ACA1242; RIP_Alu_chr4_120_01	GCGAGGGCCTTATAAAAGATG	ATTGGGTTTCACATCCGTGT	SINE	Alu	Ya5	ccgaacaaaactgtctgctttctacatgttttccacagtacccctacttgcttctacctaacattcaacatcttgtaatttcttatttgctaatccattt<br>cccctagtagactgtctatgaaaggaggcatgtagttcttaacccaactggaattttagtatacatttgttgaattaacagatgaaggaaaagcatacgc<br>tttactattaactatcctcactataaactaatatatgtcattgcctttgcggctaacctcagatgtcacaaacctacaatgctaaatctgtcatactaag<br>gatcctctgtgcttttgttaagtttatccaggctatggttaacttcagaattctctcctttccagtgactgcgagggccttat<font color="green"><u>AAAAGATGCTGCAATGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAACCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAGATGCTGCAATGA</u></font>atttctttctttatttcatttgcttgcttattattcttattccttctacataaaacgaacaaacaaaacaaaacaaaagc<br>acaagctctggtggcaaatagacacggatgtgaaacccaatttcaccactgctagctttatgatcgtgaaaaattagtcttttagtttcagtttcttacc<br>tataatacttacatccatatcataggattgtcaaagaattaactggtacatatcaaggcctcctggtacatagtaggatgttggtaaatatgaaacctat<br>taaatctcttttttctcttacccctttctcataactcccattattacagcctcaaaatgcttaccacctgattattcagtacacgagctgcttctcatat<br>ttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	471	151	NA	intergenic
0	chr5	13948093	13948379	1000280	0	+	pAlu5-13927730; Ya5513; RIP_Alu_chr5_013_01	TGGCAGGTAGAGTAGCCAAAA	GGCTGTGTAGGAGGTGAGACA	SINE	Alu	Ya5	tattcaacagatgttaggaactcagcctttagaattcagaaatactaattattcaggcagacttactgatctttgcaaaagtgttttctaaataagcctc<br>aatattcagtgatgtccaggtcagtgcagccaagccaggttggagagcttcatccactttggccaagtgagggacaatcaattgctcaatggcagcaggt<br>atttttgacttcactctctgatattcagctagcatcatctgcaatgaaattggggttaagtaatcaattaatatctcacttctaatgtctgttaatatct<br>catgtcttatacaaaatgactacttttatttagggtcaaactgtagggctctaatagcctggcaggtagagtagccaaaacaataaaaag<font color="green"><u>AAAAGAAGAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA</font><font color="green"><u>AAAAGAAGAC</u></font>aag<br>gactctctccataattacaaattcctaatccaaaaaaatacaactgaagatgaacaagaatttaagactaacagtgtctcacctcctacacagcctaaaa<br>agggagaaaatctaaggccaagtaatttttctaaaccatgcagaaacacgggaatggcaccttcacctgctcatcaccaggcttgtttgttcctctttgt<br>acactgatacgacatgcgtgctgctcctctggggacctcttgtagactacacccatcacccaaaacatgtgggtcgccagaggtctacctcagccctttg<br>ctaggattataggccaaatcttgttgccaagacccaaagcacaccgggaaccagtattgatctcaactagtgtcacggctttgaatt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	58	436	139	NA	intron:DNAH5:NM:001369:15/79
0	chr5	65381805	65382128	1000281	0	-	Ya5ACA1292; pAlu5-65316484; RIP_Alu_chr5_065_01	AACCAATGCTGGGGTTATTAAG	TGCCCAGTTGAGTTCAGAAA	SINE	Alu	Ya5	tatgagtttgtttcactggagagcagagtgaggtgtcttgactactatcagtattaagagaaactgaatcagacatccgagatggagaagaacaattgct<br>gttattctgattgctattgtgtgtaacttcatctgataaagaatctgtttcctttgtatcatctgaaacaaaacaaatttaagattaatgataaattccc<br>caagaattgtgtgaaattcttttcagtgatgacaaatggcaattataccatcctggttctatatatgaggtaataaattatattgataattggaagcacc<br>cctgaaaattcagtcctaatacaaagattaaataatttttagatggtgatataatttttcaaaaagtaaccaatgctggggttattaagaattc<font color="green"><u>GATTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAGAATTC</font><font color="green"><u>GATTTA</u></font>gttactgacaaggtgatattattatgtactgttttctaaggtcagttaatttcaatgaatatacttttca<br>cccatttacaatttgaaaaactgataatgaaaattcatttacaacctttctgaactcaactgggcaagaaattatttcatacatatatggaattttttcc<br>catctactctaataaaaataagcaattcaatccacaaacatataatcaccaaacaaatcaaggaattttcaaaggtcagctctttcttaatgtttttaaa<br>acatttcataaacttgtttatgaatggtaaactctcagtatgtaaggtggttgtgtgtgtagcaattacatgaacagaaacagacaagtgttcatattct<br>ataataggtagtataacaagtagt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	499	169	NA	intron:ERBB2IP:NM:018695:19/25
0	chr5	78128461	78128756	1000282	0	-	Ya5ACA1335; RIP_Alu_chr5_078_01	GGCATGGAAACTAGAGGAAC	AAGTGATTCTCCTGCCTCAG	SINE	Alu	Ya5	aggttgaacctgttttgatggccaaggccagcagatggatgtcaatatccctatgtgaaatacaggagtggagcaccatcgaaggaatgatgtgagaagg<br>aagtgagaaggctgggctttgttactgtgcaggttcacctgggctagaggcactatggttggatacacaaaacaacagtctgggttagagataagattct<br>ggagtctagaatacccagcgaaatgttgggcatggaaactagaggaacgaaaacattgaagagatgaacagtgaaaaaagaataagcaaatgaggctgaa<br>aagaatggcaggtagaggccgggcgcagtggctcgtgcctgtaatcccggcactttcggagaccaaggcaggcggatcacaaggtc<font color="green"><u>AAGAGATCGAGACC<br></u></font><font color="red">TGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCAGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAGA<br>GATCGAGACC</u></font>atcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggcgtgtgcctgtagtcccagctactcg<br>ggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagccaagattgtgccaccgcactccagcctggtgacagagtgagactcc<br>gtcaaaaaaaaaagaatggcaggtagaaatgagactcccaaagatgaacccagatggagcattttctctatgccaggcactgcagtaagtgctttgcacg<br>cattgtctcacttagagactgaaaaggggaaggacaccttagaaagaagaaaatttcaaaaagagagaccctccttctgccttgatcatatttgtc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	597	287	NA	intron:ARSB:NM:000046:6/8
0	chr5	73684753	73685059	1000283	0	-	pAlu5-73687606; 240; Ya5ACA1339; RIP_Alu_chr5_073_01	CAGCCACAACAAAGCAAGAA	TATTTATGCAGGGCCTTGGT	SINE	Alu	Ya5	tcaatgtaatacaatgtataattagatgtttgcttgtttcagtcttccccattgcatttcagccaccacacagtcaggggccatatgtctgcttcattca<br>cttttatattcacagacatgcacaatgcctggagcctaagaggtgctcagtaaatacttgctgaatgaatgagtgacctttgaggaaagcctcattagca<br>aatatatttcttggccagttgaatccaagctcttgttttatattccagaaagaaaacctgcagattccattgatctggcatggagctggatgtctttcag<br>gatgaagagttttcattaaaacacagccacaacaaagcaagaaaaaagagcaattgatgtaagcatgccagtcaggttcacatgttaag<font color="green"><u>AAACAGAATAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAACAAA<br>AAAAAAA</font><font color="green"><u>AAACAGAATAA</u></font>aaagaaataaaaattgataaacaattgtaaatcataccaaggccctgcataaatatgacttgctattatgcataatacaata<br>catggcatttttgtcttggaacctgtccaatgtggtttattattggaagaattgggtgaatcttgttaaaacacagctttacctgaaatttgatccctag<br>gtgtgaacccagaggacaatcttatggggattttccaattatggttttaagtaaggagttgtggaattctcatttcatcctcttcaaaatttcttgcttt<br>aaatgaatgagtagactgaattattctccttttaaaaaacaattgttttgcttggtgaagaccagaagaatcatgccagttctaatgcaggagagaaata<br>catttta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	450	132	NA	intergenic
0	chr5	53212699	53212990	1000284	0	+	Ya5ACA1360; RIP_Alu_chr5_053_01	GCAAACTGGCCAGAAATCAT	ACAGAAGATGGTGGTGGAGG	SINE	Alu	Ya5	ctgcttaataaaagtgttgggttgatacactgcatgtctagaaagttgtaaaacaactggagaaggtccagagacaaacctgacttgctccagattacag<br>agaatgacagctagacttactgtttgcattcttgtctctgccttttggtgagccgtttccattctaacaaaatcttctcatttttaatatttatatgtct<br>aatgatttaatatcataccacatcactctggccttcaaggtgccctggacacacatttttctgatttacctttacacagattatacgcaaactggccaga<br>aatcattcatttcaacatgaacctctcaggtaagaattgtggtcttacttctctctccagaaacagctttcttcacagactctgttt<font color="green"><u>AAAACCAGCTCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAACCAG<br>CTCCC</u></font>tccaccaccatcttctgtaagcttgtccagacatggggtacatcattaggccaggtcttccagtcattcccttgcttgcaaagcaatcatttata<br>ggcgtttggtgctttgtctgacatctgtttgatgctggaactctagcctttgtctcaatgaatcacttgtcggtgaaagtccattgtaggctggatttca<br>cactttcaggaggggtttgcctgtgatggaagtgatcttaggctttttgaaataaccagctccctccgcctccctatattccatgaagaaacaggaaaat<br>gagagagtctggggaacctggtgcttattcaagcctcattttgatttgttcccttgggcctgagccaggttagcatctctggggactacatt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	437	132	NA	intergenic
0	chr5	164298891	164299186	1000285	0	-	pAlu5-164301750; 3812; Ya5ACA1436; RIP_Alu_chr5_164_01	GCATGGAATCAGGACAAGTA	TCACATGGTGAAAGGTGCTA	SINE	Alu	Ya5	atagatttgaagcttgaagacatctttgtttctctgtacatatgtataattacttgaaaaaatatttagtttttatcttaaccaaagcccattatctagt<br>tggtagttatcttgtttgctctagatgtattacctgagtggcatggaatcaggacaagtatgtaatttgtagagccccctgttcaaaaataattaggaat<br>ctcaagacagtaacagtagagcattaaaccaagtgtggggtttgttatggtctgaatgttcgtgtcccctgccagactcatatattaaaatcttaccctg<br>ccaggtgatagtattaggaggtgggacttttggggaggtaattaggtcatgatggtagagccctcatgattgggattagtgttctt<font color="green"><u>AAAAAGACCTTAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>AGACCTTAGA</u></font>gagttagctagcacctttcaccatgtgaagacatagcaagaaagcactatctatgaaccagaaagcaggcccccatcagacagtgaatct<br>gctggtgccttgaacttggacttcccagcctccagaactgtgagaaataaatgtttgttgtgtataagacactcaacttgtggtattttgttacaatggc<br>ccgaacgcactaagactgggtccttttgagcataaggcccttcacaggatttgtgcccatgaatccagtactgtatggaattcattctaccaacaccatt<br>gctccttttcagcctgtattgaagttcctctctttattgatctctttatgttgaggtgcctaggaccacaggccttaccctctgttctattcacac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	598	288	NA	intergenic
0	chr6	108372815	108373108	1000286	0	+	pAlu6-108266151; Ya5NBC54; 31139; RIP_Alu_chr6_108_01	GTTTATGTCAGTAGGAGTTTTCTCGTGTAG	TCATTGTATCATCTGCTGTACCTGT	SINE	Alu	Ya5	tgaaacccgtctgtactaaaaatacaaaaattagctgcaggtggtggtgtatgcctgtaatcccaagtactcaggaggctgaggcaggagaatcacttaa<br>acccgggaagtggcggttgcagtgagccgcgatcacaccactgcattccaacctagatcagagtaaaactcttgtctccaaaataaaaataaaaataaaa<br>ataaagaagtctagcctggaaatagaaattttggagtctgtgcattagtctaatcctaagcctgtcaccccacctgggttacaaattctaccaaaataag<br>actatgtttatactgcattcatcattgtatcatctgctgtacctgtacggtcaaacagtgaacgcttaatcagtaactactaaaactaaac<font color="green"><u>AAAAATCTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCTAGAACCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAAAT<br>CTA</u></font>aagcaaaaaaagagttggaatctacacgagaaaactcctactgacataaacagaattccaaaatgtaaagaatatctttcttttctttttttttttt<br>ttgttttgagacagagtctcactctgtcgcccaggctggagtgcaatggtgcgatcttggctcactgcaacctccacctcccgggttcaatcaattctcc<br>tgcctcagcctcccgagcagctgggactaaaggtgcacaccactacgcccagctaatttttgtatttttagtagagagggggctcactatgttggccagg<br>atggtctcgatctcttgacctcgtgatccacccccctcggcctcccaaagtgctgggattacaggcgtgagccaccgagcccagccgagaacat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	433	139	NA	intron:SEC63:NM:007214:1/21
0	chr6	62111954	62112258	1000287	0	-	Ya5NBC171; RIP_Alu_chr6_062_01	TCTAGAATTACAAGTGCAAGCCATC	CTTCTCATCCCTGCTAACATAACAT	SINE	Alu	Ya5	ctctcttgttgggggctaataacgcagctggtgaccttaagtggaagccaatgctcatttaccattctaaaaatcctaggggccttaagaattatgctaa<br>atccactctacaaatgctctatgaatggaactacaaagactggatgacaaaacatctgttgacagcatggtttgctgaatattttaagcccaatgttgat<br>acatactgatcagaaaaaaattttttttcaaagtgttactgctcattggcaatgcatctgttcacctaagagcgctgtttgagatacacaaggagattaa<br>tgttcttctcatccctgctaacataacatccattctgcagcccatggatcaagggataattttagctttcttgtttcattattt<font color="green"><u>AAGAAATACATTTTGA<br></u></font><font color="red">GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAAATACATTTTGA</u></font>gctgggtgcgatggcttgcacttgtaattctagatactcaggaggctaaggtgggaggactgcttgaggctataagaat<br>gagaccatcctgagcaacatagtgagactttgtctctaaccaaataaagaaaagaagagaaaaagccagagctcagcaaggctgctgtagacagactgcc<br>agatttttcctctctggacagggaatctctgaaaaaaaggcagcagccccagtcagagacttatagatagaccgccccatctccctgggacagagcacct<br>gggggaagggacggctgtgggcgcagcttcagcagaattaaatgtccctgcctgatggctctgaagagagcagcggacctcccagtacagtgctcgatct<br>ctgct	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	55	451	130	NA	intergenic
0	chr6	9371723	9371971	1000288	0	-	Ya5NBC197; RIP_Alu_chr6_009_01	CAGAAGTAAGATTGCTGGATCGTAT	CTCAATGAGATATCACCTCACACAT	SINE	Alu	Ya5	acataatgtcctccaggttcatccatgttgtctcaaattacagaattttcttatttttttaaggctgaagagtgctccattgtgtattacaccattttct<br>ttatccattcatctttcagtagacatttaagttgattccatacctctgtctgttgtgaataatgctgcaatacacatgaaaatgcaggtatctcttcaac<br>atactgaattaatttcttttgaatatatacccagaagtaagattgctggatcgtatagtagtttcatgtttgtttttaaatgaatcttcgtgctattttt<br>cataatttctgtactaatttacattcctactaatagtatatacccttttgtccacatccttgccaaaagtttgaagtcttttgtcttatt<font color="green"><u>GAAAATAGCC<br></u></font><font color="red">GCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGC<br>GCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGC<br>CTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATAGCC</u></font>attctaatatgtgtgaggtgatatctcattgaggttttaat<br>ttgcatttctctgatatttaatgatcttgagcattttttcatatacctgttggccatttgtatatttcctttcaagaaatgtctgttctgttgaccattt<br>tttaattgagatttttttgtttgagttccttgtatattttggatattaaccctttattagatgtatggtttacaattttttttcatttcgtagtttatct<br>tttcactccactgattgtttcctgtgttgtgtgaaagccttttaatttgatataattgaatttttctctttttgcttttgttgtgtgtgtttttgtggtc<br>atatccaaaaaataattggtcagaccaatattaagaagattttaaaaat	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	461	204	NA	intergenic
0	chr6	124540622	124540928	1000289	0	-	Ya55572; pAlu6-124433954; RIP_Alu_chr6_124_01	TAAAAGAGGCGCAACGGAGT	TACATGGCACCTTTTTGCTG	SINE	Alu	Ya5	tctactaaaaatacaaaaaattagccgggcatggtggcgggcgcctgtagtcccagctactcgggaagctgaggcaggagaatggcgtgaacccaggagg<br>cggagcttgcagtgagcctagatcatgccactgcgctccagcctgggcaacagagcgagactctgtctcaaaaaaaaaaaaaaaagttaatgtacgtcta<br>aatccatttggctgctgtaacaaaatactagaaactggggggtctgataaacaacagaaatgtatttctcacagttctggaggctggaaagtgtaagata<br>aaagtaccagaaaatttggagtctattgaagccctcttcttcctgtttcttacatggcacctttttgctgcatcttcacatggt<font color="green"><u>AAAATGGATGAACAGA<br></u></font><font color="red">TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAATGGATGAACAGA</u></font>aactccgttgcgcctcttttataaaggctttaatcccattttgagagcttcctcctttatgacctaatcacttccca<br>aatggccccagctccttggaggttaggatttcaacatatagattttggggaaaaaaaaactttcaaccataacaatgtacgtaaaacacaatcatatctg<br>ctatgcagagatttctaaatagggattaatttttttgtatttcctattttcccaggataagtgtaataatgttatggactggtaatagactgatgccata<br>actatgttttaatgaggggttctgaaagtcaatacctgggccacaaaaaaggattccagtggtagtcatttacagaaatgtcacaggattataccagaag<br>tttaaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	394	71	NA	intron:NKAIN2:NM:001040214:1/7
0	chr6	105674547	105674865	1000290	0	+	Ya5ACA1458; pAlu6-105567882; RIP_Alu_chr6_105_02	ACAGGCCCATAAAAACATGG	TTGCTTGACTGTTGTGACAGG	SINE	Alu	Ya5	gtcctcatgagggcccagccatgcacctaagtgctaaagacagttaggactgatgttccttcgttgtgcaaagatgtcacccaggactctggaaaagagt<br>gggtgaaggagttaaaagaggagatggaaatcatctatgagatgaagaaattatatttagatgatacataaggctgttaacttttcttcagccatctgaa<br>ttacctcaagtttccactgaggcaatgaaacttttacaatgacactgtaatttccttagcaaattcactttttattgatggttaaaaaattactttcgac<br>ctgtttaagttattattgaatataaaataatagtattcaaataataagccgtacttagttcatatgagtaacttacaggcccat<font color="green"><u>AAAAACATGGATTTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGAAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACATGGATTTGG</u></font>ttggaagccagtagttagagtgctgactgaggtcattttacttgattcctaatgtttcatttcta<br>ccaaatagacagtttatttaatgatttcctgtcacaacagtcaagcaaagtgtattttttatgagaatatcttataaagcaatataagaattttaaaagt<br>ttccataaaataaatttacttcttattaggcatttcagtagtgctatgcttgagtccttgtgaagaattttactgaagaaataaaagcaaatacggcaac<br>agaatacataaaaggacatctttcaggtcgagaattagactaagcatttgcaaacaggtttgccgtgattaccacaaggtactggatcagttcctccctt<br>tagattccaaaccaattct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	474	139	NA	intron:BVES:NM:007073:5/8
0	chr6	12011439	12011734	1000291	0	+	17222; Ya5ACA1491; pAlu6-11965898; RIP_Alu_chr6_012_02	TTCCATTAAGTCAGGCACAAA	CCTGCAACTCCTACCCAGAA	SINE	Alu	Ya5	aaaacacctaggtatataaaatactgagaaatgtttttattttgggtgggcccagctcagctaaaactcaggaggtctaattttgagaaacaagggaaaa<br>acaaatacttacagattaacagcaatcttttacataaaaattttccacccccaagtgaaaataagtagcagtttcactttttcaaaggctttagactatt<br>ttgtttcctagaaatatatttattttcattaatagattattgggtctgacctccaactcagataaaaccattggattccattttttattatccctatgag<br>ttctatcctaagaatatgaaataattcaagattccattaagtcaggcacaaattaccctttaattatattagtagtctatcatc<font color="green"><u>AAAAGTCTTTAGAGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>GTCTTTAGAGTG</u></font>aaaaggaaaatacatgaatgtataataaaagccaagaaaatgtaaaactattcattctgggtaggagttgcaggcttctctgagttca<br>gagatatttatgtaagatgtgcttagaagaacaatgtctttttaagctttgcatcccatgacatattaacagtaaaatttaaaagggactcagtaatcag<br>caaaatgacttatatgagaatgttcacaacttgtttcatactaaccgaaacctggaaatggtccaggatggatccataggtgaatggattagttgtaata<br>tatgcatacaagggtatatgcatactcatcaataaaaagaaacaaactattgatacatgcaacaacatggatatgtctcaaaagcattatgctgga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	455	143	NA	intergenic
0	chr6	134859054	134859355	1000292	0	+	pAlu6-134752390; Ya5ACA1497; RIP_Alu_chr6_134_01	GCAAGACTTCCTGAAAGGGA	TGCAGTTCCAGAAAAGAGCA	SINE	Alu	Ya5	tacagagaaacaactttctcactgccactactgcccactccaaacttcaggttcatgttgccccttcatttctttcggttaccatgttattagttcgtta<br>attctttaaatcatttcgcaaggatttactgtactgagcacctcttctgtgccaggaatgtgttaggtgcctgccgggaaggatttcaaaattgagggtg<br>gagacaggaaaatagacaacatctggttggcagcatgttaagaggtcagtgtaagatgggtgtagcctccgagagatccttaaaacatactgggggtact<br>aaaaacagatacttaaaacaggctggggcaggcaagacttcctgaaagggatgaggcctgcaccaagccagctaggtgaataggt<font color="green"><u>GAAACAGCAGTGGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>GAAACAGCAGTGGAG</u></font>gatgacccagcaaagggagctgccgtgcatagccatgacatcacaagacaatgtgctcttttctggaactgcacttttttgtt<br>tgtttgtttgttttttgagatggagtcttgctctgttgccaggctggagtgcagtggcacgatctcaggtcactgcaaccttctccttcctggttcaagc<br>aattcccctgcctcagcctcctgagtagccggaaatacaggtgtgcaccaccatgcccagctgttttttttttattttattaaagacagggtttcaccat<br>attggccaggatggtctcaatctcctaacctggtgatcggctggcctcggcctcccaaagtgctgggattacatgcgtgagctactgcgcccagcctgac<br>gt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	459	142	NA	intergenic
0	chr6	32611927	32611998	1000293	0	+	238419; Ya5ACA1508; RIP_Alu_chr6_032_01	TGCAGACAAACATGGAATGAA	TTAGGGAAGAAGGGCTCCAT	SINE	Alu	Ya5	ctgaggagaggacaggacaatcagctgcagagaggagccaccctctctgttgatagctgaacagatgtcggggcaacctggcagtggagaggagctgccc<br>actgtggctctctgagctgttctattgcttaataaagctcctctttgtcctgctaaccctttacttgtctgggtacctcattcttcctggacgcaggaca<br>ggaacctgggatctgcctaatgatgaggctaaaaaagctgtaacacaaacaggttgtagatgagcaatagagaatgtagtcaaatgcagacaaacatgga<br>atgaaaaagcaaaaataaatccatatcattccatgtaacaagaccattttttaaaagtagttttaagtggacagaaaaattgcag<font color="green"><u>AGAAAGTTCATGGAG<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AGAAAGTTCATGGAG</u></font>cccttcttccctaaagcagccttctgcttaatttctcctattcttaacatcctgcatcggtgtggtatacttgttaccactg<br>atgaagcaatactgatacttgttgttaactgagatccatagtgaaattagggatcattcttattatacagttctatgggttctgataaatatattatgtc<br>atatatccaccatttagtggaactgacccaagagtcccataggcagttttttttttttttaaataaacatagaaatggacacttctggtcttaaagcttg<br>aaacttacatttgttttatttgagttcctttccaaaaaaatattctcccaggcctctcaaaaagtatcaaagaactggaactcaccagatcgtctcatct<br>agt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	448	130	NA	intergenic
0	chr6	22335464	22335733	1000294	0	+	238761; Ya5ACA1516; RIP_Alu_chr6_022_01	GGCAATTAAGGCACTGTGGT	ACCATGTTCCCTGATGTTCA	SINE	Alu	Ya5	agtacctgaggcctctccagctatgtggaatggagtcaattaaatctctttcctttataaattacccagtcttgagtatttttttaatagtagtctgaaa<br>actgactaatacacatcttttcctttctctgtctgaacatagatatggtccaccctcttcttgccctttctgccaggcttttccactgctatggagaaat<br>acagagtataagatacaaaagtcagtagttttgagacagattacgatttaaataattaaattgccacttaggcaattaaggcactgtggtacattaggat<br>tataacctgaactcctgaatataaattttaaaaaattattttggcccctattttccaatggtatttcaacctttattagcttcccatt<font color="green"><u>GAAAAACTTGTG<br></u></font><font color="red">GGAGGCCGAGGCATGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGG<br>CGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCC<br>ACTGCACTCCAGCCTGGGCGACGGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAGAAAAAAAAAGAA</font><font color="green"><u>GAAAAACTTGTG</u></font>tgcacagagaaaatgatt<br>cataactgcaatagccctgaacatcagggaacatggtaaattttccagaatgttggaagtattttactaaccaagtttggatcaggcttctatattaggc<br>aaaataggaagagcaccggacttggggtcctggtacctgccaccaagtagtggctttaaatgagtcacttttctgtagacattagctgcctcatctaaaa<br>agtaatgagattgaagctagtggcttttaagtgtcgtttaaggtacttacgtcctataacctgtttgtgtgtgtgtgtgtgtgcatctttacaaaagcag<br>atgagattgaatgaaaatttatgcctttctttttttgagtgcattatgtaatacactttgcagacttgtg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	467	165	NA	intergenic
0	chr6	51625323	51625634	1000295	0	-	Ya5ACA1532; pAlu6-51518660; 13202; RIP_Alu_chr6_051_01	CCCCTTGTGGCACATATAGAA	GCTTCATGATGTCCTGAGCA	SINE	Alu	Ya5	tcaggaccatgaaaggtaagaaaattgtatctatcaactcagaaggataaccagaaaagtcattcttgtcatacaaagtatacagaaggttattcttgag<br>ggggagagatcacagtgttctatatctttgcatatctcacagtgccttgaacaacatttgtacatagtagaagggttaacatatacttgttaactatata<br>gaaatatgttgatattagatttgcattttccctgtatataaacataatatatttaatttagaattctttagaattgactaaagaatttacttttttcttt<br>cagagtacaaaattgtccaaaatcattttatatttcaagtccccttgtggcacatatagaatatttggccttatctagcctattta<font color="green"><u>AAACAAGAGAGATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAACAAGAGAGATA</u></font>aaaaatgctcaggacatcatgaagcattcaatcaaaacatgaggctttttataggaactcggcttagtagcttt<br>gagaagaaggttgaagagagagtatctctgatttccaccccaacttcacctcaccccaccacagtaggtcttgttgagagccagttttcactaataaaac<br>ttacttgctttctgagttttccatgcaaatagaaataattccatcttctacagggtaaacatttcagatctggtggaatcgaaaagcaagaataatgaca<br>tgaataggagtgatctcttaattgggaaatttctgtattttcttgacttttctcctatagcctgcatttaagcattgcagaaaaaaaaatctctcacata<br>cctaactgggta	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	411	85	NA	intron:PKHD1:NM:138694:61/67
0	chr6	74477984	74478280	1000296	0	-	1968; Ya5ACA1570; RIP_Alu_chr6_074_02	AGAAAACTGCACATGTACCC	ACTGTGAAGCAGAAACATTG	SINE	Alu	Ya5	aactttaaaatacaatttttttttttttgagacggagtctcgcttcgttgcccaggctggagtgcagtggcatgatctcggctcactacaacctccgctt<br>tccaggttcaagcaatcctcctgcctcagccccccagtagctgggattagaggcatgcgccaccatacccggctaatttttgtataaaatacaatatttt<br>ttagagagtgaaataatagacattggagattcatatggcagggaggtaagggataagaaatgacttaatggatacaacatacactatttggctgatgttt<br>atactaaaagcccagactccaccactacccaaaatatccatgtaagaaaactgcacatgtaccccctaaatctataaaaataaaatatttt<font color="green"><u>AAAAACTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AACTTA</u></font>aagtacgattttaaaaatacaatgtttctgcttcacagtttaatgtcactttaaggcaaaaaaactattgggtaaattcagtctacacagaaaa<br>cacaagtattctgagcagaacaaaaccaaacaaaaaatctcctttggtcccttacatactccttttatatttttctctcttatttccctttgcttacaaa<br>tatcttaataaatttgagtttcataaacaaagttttgttccattgtctaaaaaaaagcaggttaaacacaaacattgagtaaaaaaaaaagcaggtcaaa<br>cacaaacctactaaaagtaaaataaataaaatggtacactataaagcaaatgttaggttaagtacaaatgaaaaacccagagtcaagcaaggttctt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:CD109:NM:133493:2/33
0	chr6	32765931	32765932	1000297	0	+	Ya5ACA1571; RIP_Alu_chr6_032_02	CCTCCTGCAAGAACTAAGCG	TCCAGTCAGTAGTGAAGGCATC	SINE	Alu	Ya5	gcctgtctctggactcaactcaacatcccatgtcctcgctcagactatataactctagacccagcctgttaatatggactgcttgtattttttcagagaa<br>acctctaaaagaaattatcaatttcttcaaaacattaacttgataggttctttttaaatcaagtaatctgttgaaaaaaaaattatatgggtgctctaaa<br>ctatatcccctggataatctaacctgtaaatagtttgaacagttatcttttacagccagaataacaatactagttaataccagaggactaatctatgggt<br>agctcgtttcaaaatttactctgagagcttaaaagaaaatatattttgtagggaaacaaagcatatttttccaagatccagtcagta<font color="green"><u>GTGAAGGCATCTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GTGAAGGCATCTT</u></font>aatagtatccaggatcctcacatgtgaagaaaagtgaactaggtaacaaatgagaagacttacatacgcttagttct<br>tgcaggaggaaaggaactatctgggtatggaaaaggttactaggcaagattgtgattgaagagaaaggataatgataaaggggctttgcagaagctctgg<br>ttagaagaaataactaatagtaatgaatatgtatctctccaaccaatgagaagcatatgatgaggcagagtcacttgtctctggcagtccaagctactaa<br>gaagcacaaataaaatatatagtagcagggggagatgggaagggtgagagaatgtaggataaattaccattcaaactgccggtagaaatataaaattgta<br>aggaataaat	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	425	110	NA	intergenic
0	chr6	168965076	168965382	1000298	0	+	Ya5ACA1574; RIP_Alu_chr6_169_01	AGGAGAATCACTTGAACCTG	GGATCAAGAAATGAAAATCG	SINE	Alu	Ya5	cctccaggcagatcgccatccttggcacgaccactgcaggtcatttcacactggggcccctgtggtcttgcatttcctctcccatctttgagcacattat<br>aaaaagttctttgttggccgggcacagtggctcatgcctgtaatcccagaactttgggaggccaaggtgggtggatcatgaggtcaagcattcaaaacca<br>gcctggccaacatagtgaaaccccgtctctactaaaaaaacttacaaaaaattagctgggcgtggtggtgggtgcctgtaatcccagctacttgagaggc<br>tgaggcaggagaatcacttgaacctgggaggtggaggttgcagcgagccgtgattgcgccactgcactccagcccagatgacagtgcgagactct<font color="green"><u>GTCTC<br></u></font><font color="red">AAAAAAAAAAAAAACCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTA<br>CTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGG<br>AGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAGTT</font><font color="green"><u>GTCTC</u></font>tcttgtattttccactattgaatagagtgtgcttaggatgaaaatgacagagaatgcgattttcatttcttgatccgtcaatatttta<br>ctatgtgtctgggatgaagcactaattaccttaaaactgtaattaacttgtcaaatgtctttcctccaagaatcctgcaaaggtcttaaaggtcttaaag<br>ggtgagtaagtaatagtctgtgatataatttaaaaggaaggccacaaaccactttttctgtttttctttgatttcatggaatagtcttcattcttttctc<br>ctgtcctcctatttggatacatgtggctgccgtgagcctctagacgccctcccccacttccagcacttggctgacggatttgctggtctgtgacccctgc<br>cagaggc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	482	170	NA	intergenic
0	chr7	34815595	34815941	1000299	0	-	Ya5NBC28; RIP_Alu_chr7_034_01	GGGTACATGTGCAGGTTTCTTATAC	GCTAACTGATGAGAACACACAGATACATAG	SINE	Alu	Ya5	tgtagattgaagtctaatggagagcatttacttcactttcttcttggcagttatctttgttctgaattcgtgcctttttgttctttctctggctcagaca<br>aataacaatcaagcacattgtggttctttatgatttgttatttctacaaatgcatctcagcactaatgttgtgaaagccaccatagggaggaggttctga<br>ggaatgattagaaattgaaggctcgtaagaaagaatgagataatgtgctttgcagggacatggatggacatggatggagggcattatcttcagcaaacta<br>atgcaagaacagaaaacaaaatactgtatattctcacttataagtggaagctaactgatgagaacacacagatacatagaggggaacaaaacaca<font color="green"><u>CTGGG<br></u></font><font color="red">GCCTATAGGAGGGTGTAGGGTGGGAGGAGGGTTAGGATCAGGAAAAATAACTAATGAATATGAAGCTTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTG<br>GATCACGAGGTCAGGAGATCCAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCT<br>GTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGG<br>GCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAATAC</font><font color="green"><u>CTGGG</u></font>tgattaaataatctgtacaacaaacccccatgacacaagtttacctgt<br>ataagaaacctgcacatgtacccctcaacttaaaataaaagttagaaaaaaggtttaaaaaaagaaattgaaggctcctctgaaaactaaaagaaaaaat<br>tatctcttgggaaaaggtgacaaatagagaaagagaaaaatggaagactagctttaagaaaaaaaaaatcgatcgtctacttagacaaaactggggtttc<br>tacctgtgatccatgaatttaaaattattaaggctggcaacaaacagaggaggaggtggcatcagagaaggatgaaaaagaaagcacacaatggcagaac<br>cctgtggagtggaacatcatggtgaggttataaggatcttggggctc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	474	191	NA	intron:NPSR1:NM:207173:3/9
0	chr7	38248167	38248476	1000300	0	-	Ya5NBC38; RIP_Alu_chr7_038_02	GTACCCTCTAATTTACAGTCATCTCATACC	GAACTTCTCTGGCTTGAAAAATCAG	SINE	Alu	Ya5	tactacactccagttgtgataaaaaagaaaaatgtattcttcacgaacttcaacattttgatatgcaaaaacatagtatataaattagatctacctgatt<br>acgtagaatcagaccaattatttctggaattgagggctcatatttttaataactgtcctcctgcctctctgttgacaggttttataaatattcatttaat<br>tacacacacacacacacacaccttgacaaataatggacatgaacaattgactagtacttgctctcattcttctagatgtcatcacaatggatcccaaaga<br>caattggtcaaaagatgcaaatggtaagcttttgtgtttttcctttcctcctgatcattttaagttttgaacttctctggctt<font color="green"><u>GAAAAATCAGGGAATGG<br></u></font><font color="red">GCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCTTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>GAAAAATCAGGGAATGG</u></font>attttgctaggttggatgctgcagaatggacctagtgatattttaaattagtccctctttttctaggagttgt<br>attaacaaacctaactactgcttcgggtatgagatgactgtaaattagagggtacagtgatatgctttcagttatttcaaaaaacagactttattcatcc<br>gtctgtcttttttttttttttttttttttttttttgagacggaggagtctcactctatcacccaggctggagtgcagtggcgcgatctcggctcaccata<br>acctccgccttactggttcaagcgattctccagcctcagcttctcaagtagctgggactacaggtgcacaccaccatacctggctaatttttgtattttt<br>aatagagatg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	487	170	NA	intergenic
0	chr7	80840791	80841086	1000301	0	+	Ya5NBC194; RIP_Alu_chr7_080_01	TATTCTTATGCCGTTATGTCCTCAG	CCATGGAATACTACTCAGCTATGAA	SINE	Alu	Ya5	agaaaataaatattctctttacataggtattttaagaaggcaataagataagtgtacttggatactgggatgcacaggtttgtttgtttttttttccaat<br>ctttttttttttttaatttcaataggttttggaaaacaggtggtgtttggttacatgaataagttttttagtagtgatttctgagattttggtgtaccta<br>tcacccgagcagtgtacactgtacccaatgttagtcttttaaccctcacccacctaccaccttttccctcgagtccccaaagttgattgtattattctta<br>tgccgttatgtcctcagagcttagctcccacttataggagctaacatatagtgtttggttttctattgctgagttacttcactt<font color="green"><u>AGAATAATGGGCTCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCAGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AGAA<br>TAATGGGCTCCA</u></font>attccatctaggttgctgtgaatgccattatttcattccttttcatagctgagtagtattccatggtagtagtattccatatatatat<br>atggaatatatatatgtggaatatatatatatatatatatatatatatatatatggatacacacacacacacatgcacacacacacacatatacactgca<br>ttttctttatccacttgttggttgatgggcatttgggctggttctatatttcaacaaatgcgaattgtgctgctataaacatgtatatgcaagtgtcttt<br>tatatataatgactttttttttcctctgggtagacacccaggagtgggattgctggatcaaatggtaaatctacttttagttctttaaagaatctc	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	486	169	NA	intergenic
0	chr7	29239970	29240270	1000302	0	-	Ya5NBC203; RIP_Alu_chr7_029_01	CAGCCTGTAGAAGCTGGAAAAG	ATACAACAGTTCTGGAGGTCTGAAG	SINE	Alu	Ya5	tcaccactgactgagcctttaaaaatcccatgcaaacttaagagttataacctggggccaatggagggcttcagtgaggtttatgggccccattaaattt<br>tatgattttgtgcactgaattattttaaaagaatgagtctgatcgaggaaggtttagaatctgctgctttaagaaatggtaccagacattacgtcattac<br>cataatgaaaatctgcccttttttagtgtcatgatctcaaacaactaatattttcattcactcggtcactatatcagtttcttattgctgcagcaacaaa<br>ttaccatatacttggtggcttaaaataacacaaacttattatacaacagttctggaggtctgaagtctgaaatcgttcaaggta<font color="green"><u>AAATCAAGGTGTTGGC<br></u></font><font color="red">CGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGA<br>AACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAA<br>CCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAATCAAGGTGTTGGC</u></font>agggctgcattctagggaaaagagaatccattttccatttcttggccttttccagcttctacaggctgccagcagtcctgggc<br>tggtggtctccttgcatcttcagggccagcaatggcccgttgagtctttctcactttgcatttttctgaaactgacccttctgtctccctctttcacatt<br>taaaggacccttgtgaatacatcagacccacaggaagatccaggataatctccttaatctcaaaaccagctgagagaaaccttaagcccatctccaacct<br>taattcccactagccacacaacctaacatgtttacaggttccaagtggaagtcgacatcttgggtgggagtgcatttttctacctaccactgttacttca<br>c	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	445	128	NA	intron:CHN2:NM:004067:1/13
0	chr7	113045708	113046026	1000303	0	+	Ya5NBC204; RIP_Alu_chr7_112_01	AAGCAAATCAGTCCTACCATGA	TATTTTGGAGAGTTGTAGGCAGGA	SINE	Alu	Ya5	agaaggtttattcctagacaggtaggccccaaaagctcatttttagaaagttgtgaagtctcagatcctatgaagagaagatagcgggaggaaggaagaa<br>aaacaataacaaacaaaggaatgatcctagaaaattgatatagatcttacgtatgtaaataggttgctgttttttttttctttgtagtttaagttgtcta<br>gctttagttctcagggctgtaaaaaagaacagcttagttttcagtgatttcaaattaggaaaaaaatgagggggaaaggaaaagaaagaagaaaaaatga<br>aaatattattttggagagttgtaggcaggaaaaaatagaattcagcacaaattgtagaaaacaataaaaattgaaaagcattaggc<font color="green"><u>AAGATTAGAATCTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATTAGAATCTA</u></font>acaacaagtgtactatagttttgaaacataatttttctctgtcaagtttcccatttttattaaagac<br>aaatcatggtaggactgatttgctttattacacttggtcagattatttgtataaagtgcagaaaaaattattttttatataggctttttaaaattggctt<br>tgatggaattttattccatagaaggcatctcagataagacttttttaaagctgagctcagtcatggatttgtgccatcaaatacctatgagttgggtgaa<br>tttcctctactcttgaggttccaagatatacctggggctccgggacctgtcagaaagtgaccttctttacttaccacaggtcagaaaccctgtacaggga<br>ttctgtacatagaacatga	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	5199	186	NA	intergenic
0	chr7	7683815	7684129	1000304	0	-	Ya5NBC214; RIP_Alu_chr7_007_01	TGTTGTTGCAAAGGACAGGA	ACGTCCACATTCCCATGTTT	SINE	Alu	Ya5	tgaccaataggcatattaaaaaaacgttcaatattgttgatcatcagagaaatgcaaatcaaaatcaaaatgagatatcatctcaacccagttaaaatgg<br>ctttaatccaaaagataagcaataacaaatgctggcaaggatgtgtagaaaagggacctcataccctggtggcaggaatgtaaattagtacagccagtat<br>gaagaccagtatggagattcctcaaaaaaactaaaaacagaactactatatgatacagcaattctattgctgggtacatacccaaaagaagaaatcagca<br>tatcaaagagacgtccacattcccatgtttattgcagtactattcacaatagccaacatatagaatcaacctaagtgtctccatc<font color="green"><u>AACAGATGAATAGAT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCTGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAACAAAAA</font><font color="green"><u>AACAGATGAATAGAT</u></font>aaagaaaatgtggtacatatacacaatggaatactatttagccataaaaaaagaatgaaatcctgtcctt<br>tgcaacaacatagatggtactagaggagatcatgtaaagtgaaataaagcaggcacaaaaagacaaatttcacattttctcactcatatgagggagctca<br>gtttttttcaaattgaactcatggagatagagaatagaatgatggttaccaaaggcaaggaagggtagcagaaagagggaaataaaatggggatggatga<br>tgggtacaaaaatacagttagatagaaggaataagatctagtatttggtagcacaatagggtgactatagttaacaataatttattgtatatttttaaat<br>aactaaaagagtgga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	500	170	NA	intron:RPA3:NM:002947:4/8
0	chr7	110329935	110330245	1000305	0	+	Ya5539; RIP_Alu_chr7_110_01	GTTGTAGGTTGGGGATGGAC	CCTTCAGATGTTCCCCATTG	SINE	Alu	Ya5	ttcaaaatataataatgatattaacagcctactattaattatagaaaaaataataagtgacagtaaattaggttttgtgaaacaaacaaaaaacagtaat<br>taaacccagatacctaaaagcctgtacacttaactaatggtccatactcctttaaaaaaaaaagattaattctgattgggctgatcctgatctggaaaat<br>tagaaaaataaaatataaatatgtcatgaatgataaaatatatatatatatatatatatagtatcaagggttcatgttggaaaaaccctgagttctttgg<br>tttgtctgaaatgtggtttaatggaaaccaccaaacgtaggttgtaggttggggatggaccgtagagagactttaatatcaatct<font color="green"><u>AAAGAGTACAGACTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG<br>AATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAGAGTACAGACTC</u></font>tattttgtaggcaatggggaacatctgaagggtgttaataaaaaaagtgacaagattatacttaattatccttc<br>tgaaactagcagcctgagggccaaatggactcagctgaacagccagcgactgatgaaagccattcttcaataaattcaatacaattaggttcccccagag<br>tggcacccttgcttgccacacacaccaggctaacactgattacggggcaatatttgagtatacgtggtatgtggctgtgtatttcttttgggtaaatttt<br>attgtggtaaaagcacttaccatgagatatactctctcaacagatttttaagtgtaggatacattattgttgagtataggtacaatgttatatgtcagat<br>ttctgaatttc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	417	89	NA	intron:IMMP2L:NM:032549:4/6
0	chr7	118131052	118131391	1000306	0	-	pAlu7-117884412; Ya5ACA1616; RIP_Alu_chr7_117_01	TGATTCCACCAGAATAGTGACA	GGACTTCCCCTTACCAAAGC	SINE	Alu	Ya5	tatttatataataatccataagtcttcagaaaagtagttgagaagaaccacatttcaatttgaccagttgcttctggatactggaatatgtggtaagact<br>aaacaattccaggggcatgagcctattgctgaacttcctttgctataaaaagagtcccttgattagaacaaattcagagtggaataccatgatggtggat<br>aaggcatttgtgagtgtatagatatggattttgacagaattatgggcaaggaaggcaaatctacccccagaatagttgtctatcctaaggggaatgaaac<br>tttgccttctgtacaattgaaagcattcaatgaaatgaacatatcattaaatatttagttgattccaccagaatagtgacatatt<font color="green"><u>GAAAGTGCAGTCTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGAACGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTGGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAACAAAAACAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGTGCAGTCTGG</u></font>aactctactattgttaaattaggcactcagctttagcagtagcag<br>aatgagctttggtaaggggaagtccacttagttgagtctacatataaccactatttctgccaaaatggccactttgttcatggggttgagtacacacaac<br>ataaaccagtgtctctggagaaagatgctggctgatatccataaaatatgtcattttttccacctgattgtccagccaatccattagaaactacccataa<br>atcaaagtatatccatacttctgatcattcccctttccaatgtatcactcaaggttctgtccactgggcagaactggctttactacaatactttagtact<br>cccgcttattgggttgtaaatgccagtgtctgaggtagaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	466	111	NA	intergenic
0	chr7	33865382	33865697	1000307	0	-	pAlu7-33606992; Ya5NBC209; 3791; Ya5ACA1653; RIP_Alu_chr7_033_01	CCTGCTCACTGCTTTTGCTT	CACCTAGGAAGGGTTAGGGC	SINE	Alu	Ya5	aacaaaaaaaatgaatggatattggtactttctaccccagggtgtgctctatgctggctcccaaagatccacagcaggactaagctttagattcccagta<br>gtaacttgcttgatgatgaacccttatcttcgctgcccttcctccctgcctcactttcccactctcctaccagtgtttcctgggatcacctccattaatg<br>tccttatcttagtatctgcttctggtgggacacagaccaagacatcatttgtgaaagagatcagtccttttgctacaagctctccttttccaaaataaga<br>ggtgaacttcgatggagtcactcatgtgaaaagtagttactatacatatcacatgtgccaaggcccctgctcactgcttttgctt<font color="green"><u>AGAAAGCCAGGCTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGCCAGGCTCA</u></font>atcctattcttcatcttcccatagactaaagagaagtggggaataatgatgaaaagtcaaggctccaga<br>gtcagagcacctgggattggatcccagccctaacccttcctaggtgtgcaattttgaataattcattctccatgtctccaagtcttcatttctctgtctg<br>taacatggataaaatagttgtgtctaccgtaagagatttaaatgagatcacttatgcaaagcactgaacacatcatgtggtgcacagcacatgctcaata<br>agtggcagattctcttattgaccttctagtttcaatttaaatgccctctctttgcggaagccttgcctgacctaagagtaaggttttctcatatgttccc<br>acaagatccctattct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID:11042148</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	447	116	NA	intergenic
0	chr4	133333504	133333809	1000308	0	-	Ya5ACA1251; RIP_Alu_chr4_133_01	GGCAGATACTGTGAAATGCT	AAGTGCTGGGATTACAGATG	SINE	Alu	Ya5	agatgtcttcaatgaggttaaatgttaaattatttactcagcacttatttctttattataagggacatttactaggcgagttccccattctccctttaga<br>gatacttaatatctagctaattcattactatttcagtaagaaaaattagaaatatttccagagattactttgggaaccaattactatccacacagtgcat<br>aaaaccatactgaattggagatgttcactccttacaattcagaaatacactatgtgataacattcagaggcagatactgtgaaatgctttgaggcctaaa<br>gattttatttaagaatatcatcatatatcataaatgaccaaaaaaattggtgaaaatgaatcatctcacttcatatgattgattctt<font color="green"><u>AAGAAAAAGATGG<br></u></font><font color="red">GGACGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAAAAAGATGG</u></font>gctgggcatggtggctcacatctgtaatcccagcactttgggaggccgaggtgggtgaatcatgaggtcaggagttcgaga<br>ccagtctgaccaacatagtgaaaccccgtctctactaaaaatacaaaaaaattagcggggtgtggtggtatacacctgtaatcccagctactcgggaggc<br>tatggcaggaaaatcgtgtgaacctgggaggtggaggttgcagtgaaccgggatcatgccattgcactccagccagggcaacagtgtgagattctatctc<br>aaaaaaaaaaaaaaaaaaaaaaaagaaaagaaaaagatgacaccattctccctacttcatctgcctccccaccttactctcaccaaaatgaatagatgca<br>aataaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	489	170	NA	intergenic
0	chr7	68100020	68100325	1000309	0	+	pAlu7-67860298; Ya5ACA1684; RIP_Alu_chr7_067_01	AGGACAGGAAACAAATCCCC	CTCCAGGGTGTTCCCATAGA	SINE	Alu	Ya5	aaaacaaacaaacaaacatgtaacccagaatcttttccccaatctttgccccaaattagtgcagaggagggtctgtagtacaaggctcagccacgtgagg<br>gattgttacaaggagacaggggggttctgatgttagggagactggcctagacaatcacattcttgtggaagaacaaggacaaggttgtctgccagtgtgg<br>gatgagcccgggtggatcacgatggactcagagctgctgatgtttaactgaagaaaagggagatggaggccaaacaaaacaaagggggctttctccaaga<br>agtgccaaccttctctgtaacactgccccaatgatcccacaaagacttatataggaggacaggaaacaaatccccacggtaaccgat<font color="green"><u>AAAAAGAAACCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTCTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAAGAAACCCA</u></font>aagccatcacttaccgggggaaatggcttccaatgctggttccttaaagaatgaacaagaacatccttgaatcctgtagcc<br>agctatctatgggaacaccctggagggcatgatgagaagaagaacccttatgagcctcatgccctagctggagaggagagaaatgcactcaccaacaaag<br>tgaatttacaattgcagacacactctgttacaggccaaataattgtgagctcctttctttttctttccttttcttttttttttttttttttttttttttg<br>agatggagtcccctgttgtccagtctggagcacagcggcatgatctcagctcactgcaacctctgcctcctgggttctgcctcaagctattctgcctcag<br>cctccc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	470	151	NA	intergenic
0	chr7	25011139	25011455	1000310	0	+	Ya5ACA1721; pAlu7-24752784; RIP_Alu_chr7_024_02	GTTTCAACATGTAACCAATGAG	TCAGAAGGGTAAGCTCAAAG	SINE	Alu	Ya5	acccaggctggagtgcaacggtgcaatcttggctcactgcaacctctgcctcctaggttcaagcaattctcctgcctcagcctcccaagtagctgggatt<br>acaggcatgcaccaccatgcccggctaatttttgtattattagtagagacgggggtttcactatgttggccaggctggtctcgatctcctgacctcaggt<br>tatccatccacctcagtctcccaaagtgctgggattataggcatgagccaacccatccagcctggttttatttttaaaaaacatattttcttttatacaa<br>tgttcctaaaatgttgtttcaacatgtaaccaatgagaatatattaatgagacattccagtttaaaatgtcaatagtacttcaagatt<font color="green"><u>GAGAAACTTTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAGAAAAAAAAGAAAAA</font><font color="green"><u>GAGAAACTTTGG</u></font>tttagatactggttgcatcactaaccaaatatatggctttgagcttacccttctgaatatcactcaatatt<br>cccacataaaaatggggagaataatacttatgtcacagtggtaatacctaaaactttttgaaagtactcacaatgggccaggcacaggaaaccaaaataa<br>ggagactgaagttcagaaaggttggtgaactcaagttttaccactagtgagtggctgagcaggattagaaactagtccaaatatgatcctttacatgcct<br>ctgagcctccagcttgaggggtgtatggctcccttgaccattcagttggaggggtcacttgcacttccatggcctccttgcacagagctgatcagaatta<br>cgcagatcattgacaac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	470	141	NA	intergenic
0	chr8	126093294	126093295	1000311	0	-	Ya5ACA1736; pAlu8-125692903;1104685371245; RIP_Alu_chr8_126_01	CCTGCTCTGCACACTTCTTG;NA	GCTAGTCAGGGAAACAACAGG;NA	SINE	Alu	Ya5	aagttagtaacaagaaaacacttcaaatgactttccattgtctgtaagattaaatgttaatggtctgtctcccactctgacacccaccctatgctcctgc<br>cataggaaactgcttgagttccttgaaagtgccaccatttctcatcctttggcaatgttattccatctacctagaagttcctcatcttactgtccacctc<br>atgaactcccactcatcctccaggtccaaggtcctttgtttccactgtttcctgaacaacgtcctccctaactacccctcccatttcacaagcttccctc<br>cctgctctgcacacttcttgacactgaatctgtgggttttatttatcaacagtgttgtaaaattatctgtctacattcctaagtagaaaatt<font color="green"><u>GCCTTCTC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTAAGGCAGGAGAATGGT<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAGAAAAAAAGAAAAAG</font><font color="green"><u>GCCTTCTC</u></font>taggtcaaggtcagttttttacctgttgtttccctgactagcacaatacttctatacac<br>tcaatgttaataactaaatagatcataaaactaattttggtattaataatgcactaatccacagtgacaaactatctgtcccagaagttattcgtaacag<br>tataaatttaatcatatatttgtcatttggaatactgattcctttataaaataagcccaaaaaataatacctcgtttcttcactgatgaaggaggaagga<br>agcttgctggcatggacctcagatgagaattgtcagtggcttctaagaatggttctttcaggtgatctgcaataaatcccaccaacccaaagaaatgggt<br>cataacacttcaatttcaaagtatcacatattt	Other;Venter	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	60;NA	484;NA	141;NA	NA;NA	intron:SQLE:NM:003129:7/11
0	chr8	15045651	15045957	1000312	0	-	pAlu8-14776369; 3648; Ya5ACA1785; RIP_Alu_chr8_015_01	TCCTCTCACCCAGAAAGCAG	ATTAACCCATCTCCTTGGGG	SINE	Alu	Ya5	aaaaaagtgaatgtcaacctgctaagacaacaaactgtatagaactacttctgagcctgttgcatgaaaagccttcattaaactaggaaacgttaatatt<br>tgaggatatgcaacaataataggtcaacctgaggtacaaaaataacacagaagctgtagagctttgttgaaattgtgtagcatataacaaagatatatag<br>gatcaagtacattaaaaatgcataagaaatattttaagtctgaacctttgccaagaactgtgatatcatttgtggaatgcaattttctgattctgtatca<br>ccttttattacaccaacttcaaaatgccagaaactgatgtttcctctcacccagaaagcagaaatgaaacagatattttgctaagtt<font color="green"><u>AAGGTAATAATAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGGTAATAATAG</u></font>attgaccacagataaataagcaattacaataactaaattataaggaaacactaccttactttagagatgcaaaaactgag<br>ccccaaggagatgggttaattctcctagtgtcagacatagtgagactaggagatgtgttaatagatgggttaaacccatgtgtttttgtaagccatggtt<br>ttcagaaagaagtaacttaaataaaacctaaatggtacttaactaatttccaatgatctggctattttcaaaacactttggaaaactggagcatgagaat<br>attataaatgcaaaatgtttctttgaaattctcttaaatacatttcattttttttcctgtgagagctactttgcttgagccttatagaaataattctgct<br>tttgagt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	479	159	NA	intron:SGCZ:NM:139167:1/8
0	chr9	21908070	21908371	1000313	0	+	Ya5NBC184; RIP_Alu_chr9_021_01	CTTGGATAGAGCTGGAGGTCATTA	ACCCAAGCAGTTTATACTGTACCC	SINE	Alu	Ya5	aaagtaatatgcagattccttaaagaactaaaagtagaactaccattcaatccagtaatcccactactgagtatctacccaaaggaaaagaagtcatata<br>aaaaagacacatgtacatgtatgtttatagcagcacaattagcaaatgcaagaatatggaaccaatctaagtgcccatcgaccgagttgataataaaaat<br>atggtatatatgtatatgccatggaatactactgagctataaaaaggaacaataataatgtcttttgcggcaacttggatagagctggaggtcattattg<br>taagtgaagtaactcaggaatggaaaacccaatattgtatgttttcacttacaagtggaacttagctataaggatgcaaaggcat<font color="green"><u>AAGAGTGATTAATGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGCAGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAGTGATTAATGG</u></font>actttgggggctcgatgggggaggtttggaggggttaagggataagagaatattgggtacagtataaactgcttgggtgacag<br>gcacactaaaatttcagaaattagcactaaagaacttacccatttaaccaaaaaccatctgtacccccaaaaactattgaaattaaaaaaaaattgtgat<br>tgatgtggtttcgctgcatcctcgcccaaatctcatttgtattttagccccaataatccccacatgtcatggaagggacctggtggcaggtaattgaatc<br>atggaggtgggtctttctcgtgctgttctcgtgatagtgaataaatctcacaagatctgatggttttataaaggggagttcccctgcacatgccctcttt<br>gc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	522	205	NA	intergenic
0	chr9	26502939	26503242	1000314	0	-	Ya5ACA1861; RIP_Alu_chr9_026_01	TATTTCCACCAAGAGGGAGC	GGCTCGGTTGGTTGTTTTAG	SINE	Alu	Ya5	cttctgagaagtagttcgttgcttcatgttgataactcaattttgttctcaattcaaagccttccagtcgatatattttaatttctttttctctttttca<br>aacactttagctaactggagtcttgttttatccctagagaacaacttcaggtgataggtagatggcatggatacctgctgttagctttgtataagaagac<br>aacagaaatgggatcactgtgtatgcatgcccaaggtgaaatagatatcaaagtcagtttcaaatatttccaccaagagggagcagaaggagtagaaaag<br>ctatccatacaataaaaagaagaagaaaaggaaaggaaaaaaaaaaaaaaggagcacaacaatttccggtaaagttaatagaaattttt<font color="green"><u>AAAATGCTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAATGCTTGA</u></font>atatatgtttctaaaacaaccaaccgagcctgtgaatttagataaacatgctcagatctcttaatgcccatgctggttgtgcatg<br>ttaggcaacttgcttccacctgtaaaccaaaattgtgaatctgaccatttcttaaaatatcagatacctgttaggttaaaaaaaaaaacaacctcacaaa<br>aattttacttttgaattctaagccaggatgaaatttaatcgcagttataaatcctccaagcaaggatttgtctggaattgccaacatcacccctagttca<br>gcaatgcaaatgacactgctataatataagaaataagaaagctttcagtatgttgtctaagaacttgagcacattgaaagtgatttatgagccagcagac<br>taaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	481	166	NA	intergenic
0	chr4	107639249	107639545	1000315	0	-	Ya5ACA1145; RIP_Alu_chr4_107_01	GGAGGTTTGAGAACTGACCG	CCAATCAAGCTTTTCTCCCA	SINE	Alu	Ya5	caggagttgaatatgaggcatgttgagtctaagagatattgctggatacaggaatatcaggtctggacaaaagatggtcctagaggtatgactatggaaa<br>taattaatatacggataatatttaacactgtgagtataaagaggaaaacagaaagaacataatatttcaaaattaagaagtcaagaagaggattcagcca<br>agaagactgagaagtagcaaccaggaagatggaaagaaaacaaaaagaatatgataccttggaaaccaagtgaagaaagtttattaagaaagaggaagtg<br>atcaaatgtgtcaaatgatgctgaccagccaagtaagaggaggtttgagaactgaccgtcagatcatggaggttattggtgaccttaagaagagcatttt<br><font color="green"><u></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u></u></font>gcc<br>gggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaa<br>accccgtctctactaaaaatacaaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaa<br>cccgggaggcggagcttgcagtgagccgagattgcgccactgcactccagcctgggcaacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaa<br>aaaaaaaagaagagcattttttttttttttactcaactgggagaaaagcttgattggatcagattaagagaaagggagaagaattacagacgaggaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	719	400	NA	intergenic
0	chr13	38397638	38397639	1000316	0	+	HS2.25; RIP_Alu_chr13_038_02	CAGCTAAGAGATGGAATCAACC	ATCCATTAACCAGCCTCTCC	SINE	Alu	Ya5	agttttctcaaaaactaaaacagcagcaacaacaacaaacttaaaatgaactgccatatgaccctgcaatcccactaccagacatttaactgatagaaag<br>gaaattagtacatcaaagggccacctgcatccccacgtgtgttgtagcactatttacgacagctaagagatggaatcaacctaaatgttcatcgaaagac<br>aaatggatcaagaaaatgttgtatatacaaaatgaaacactattcagccataaaatgaaataaaatcctgtcatttgcagcaacatggacaagtctggag<br>gacattatgttaagggcaggcacagaaaggtaaatactgtgtgttctctctcatatgtgggagcttaaaaaaaaattagctcat<font color="green"><u>GAAAGTAGAGAGTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGTAGAGAGTTGA</u></font>attgtaggtattagaggctgggaaaggtagtgggcaggagagga<br>gaggctggttaatggatacaaaattatagctgaggtaggaggaatgagttttggtgttctgtggcattgcagggtggatatggttaactatgatttattg<br>catattttcaaaaagctagaagagaggattttgaacattcacaacacaaagaaatgttaagtatttgaagtggtaaatatgctaattagcctgatttgaa<br>cattacacattgtatatatgtatcaagatattactcactctgtattccataaatatgtgtatatgtatcaattaaaagcaaaagaaaaaatatgtatccc<br>ataaaacaatagaatatgggccaaccttaatgatttgctt	Other	<UL><LI>Arcot SS, DeAngelis MM, Sherry ST, Adamson AW, Lamerdin JE, Deininger PL,Carrano AV, Batzer MA. Identification and characterization of two polymorphic Ya5 Alu repeats. Mutat Res. 1997 Sep;382(1-2):5-11.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9360633">PMID:9360633</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr1	65908309	65908631	1000317	0	+	HS4.14; RIP_Alu_chr1_065_01	AAGAGAAGATCAGTAGG	TATGGCTCAGAATACAG	SINE	Alu	Ya5	tgtgaactctaattaaaagaaagttaaattgcctataataatatgagacagagattgtagggcaaagaatattaccagggataaagagagaaatgccata<br>ataataaggacataaactccttaagaggatataacaattctgaatatgtatatgcctaaaaccagcttcaaaatacttgaagaaaaatggatagaattgc<br>atggagaaatagacaaatccacaattatatatgaagcactaataatcatttccaataattgataaaacacataaagagaagatcagtaggtatataaaat<br>atttaacatcatcaagcaactattcataattacatttataaaagactccacccaaacagcagaatatgcattttaaaggatgcacataaaac<font color="green"><u>ATTCACCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCAAGATCCCACCACTGCACTGCAGCCTGGGCGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>ATTCACCA</u></font>atatgggctgtattctgagccataaaacaaatttcaatacatttaaaagaattcaaatcatacaaagca<br>agttctttttattcaatgggattaaactacattccaatcaccaaaaaaatggaaatttcccaaatacataaaaacaacatagtacggttataaataactc<br>atggacaaagatgaaatcaatagaaaaaatgtaaaatattttaactgaattaaagtgaaaacatagtatatcaaaacttgtgagatgtagttaaagtact<br>acttagcaggaaattgacggcattacgtatttaaattagaaaaggaagaagctgtcaaataaatgacctcatcttcaatctgaaagaaactacaagagca<br>catgaaatatgaagtatgctgaa	UCSC	<UL><LI>Arcot SS, DeAngelis MM, Sherry ST, Adamson AW, Lamerdin JE, Deininger PL,Carrano AV, Batzer MA. Identification and characterization of two polymorphic Ya5 Alu repeats. Mutat Res. 1997 Sep;382(1-2):5-11.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9360633">PMID:9360633</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr19	22559998	22560310	1000318	0	-	Yb8Sb23467; Yb8AC1805; Sb19.3; RIP_Alu_chr19_022_01	TCTAGGCCCAGATTTATGGTAACTG	AAGCACAATTGGTTATTTTCTGAC	SINE	Alu	Yb8	tcaatctaaccgaactaatatttagtgagaggttaatataaactaggcattggtgtatagatttgacaagatgaaaatttcaccctcaagtagatcccat<br>agttatcagaagacaaaaacataaaaataactgtaatattgagtggtatattccaatctagttttaaacattgtattggtgctaaggaagttagaaaaac<br>aaaccagacacaaaatctgcccacaagtgcttgtaatttacttgaagaacttaattctaacatagtttcatcaggtaattcaggtaaatattcactctag<br>gcccagatttatggtaactgataattattgataatttctttagatttgttgatattctacttgatgaaacatccaaattttactttatgt<font color="green"><u>AAATGTGGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTAGGCGACAGAGCGAGACTCCGTCTCAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAATGTGGCC</u></font>aaaagtgtcagaaaataaccaattgtgctttttataaaacaacaatgaacaacgcttgactaaagccaccacacaga<br>gcgactatcattatgggtaggttgtctttgaattttaaggtattaatcacagaagaggaaactcagtcctgagaattgcctattgggtggttaatcattt<br>ctgttagttacattttgactaatcatccatccatccatccatccatccatccatccatccatccatccatccatccatttatccatccatccagccagcc<br>agccagccagctaatatcccatcccactccacaggaatatggtgggcatctcaatattagctgtaagctgaagctggctcatataggcttctgagggacg<br>attgttaaatttc	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Arcot SS, Adamson AW, Risch GW, LaFleur J, Robichaux MB, Lamerdin JE, CarranoAV, Batzer MA. High-resolution cartography of recently integrated human chromosome 19-specificAlu fossils. J Mol Biol. 1998 Sep 4;281(5):843-56.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9719639">PMID:9719639</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	494	171	NA	intergenic
0	chr19	56552458	56552459	1000319	0	-	Sb19.10; RIP_Alu_chr19_056_02	GCCAAGAAATAAAATAGCCCTCC	TGGGATTACAGGCATAAGCCAACAT	SINE	Alu	Yb8	ctcacgcctgtaatcccctgcctttgagaggccgaggtgggtggatcaccagagatcgggagttcgagaccagcctggccaacatagtgaaaccctgtct<br>ctattaaaaatacaaaaaattagctgggcgtggtggtgggcacctgtaatcacagctactcaggaggctgaggcaggagaatcgcttgaactggggaggc<br>agaggttgcaatgagctgagatcatgccactgctctccatcctggacaacagagcaagactccatctcaaaaaaaaaaaaaaaaagaaagaaagaaaaaa<br>aggattgtggtgggccaagaaataaaatagccctccaaaacagccaggtttcaatccctggcacctgagaaggggaaatcactt<font color="green"><u>AGAAACAGGGTCTTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGC301GGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAACAGGGTCTTTG</u></font>caggctggccatgttggcttatgcctgtaatcccagcactttgggaggccgaggagagcagatcacc<br>tgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggcgtggtgatgcatgcctgtaatc<br>ccagctacttgggaggctgaggcaggcaaattgcttgaacccgggaggcagaggttgcagtgagccgagatttcaccactgtactccagcctgggcgaca<br>gagcgagagcccatctaaaaaaaaaaaaaaaagaaattagaaacagggtctttgcagatgtgattaaattaagcatcttgagatgggggcattatcctgg<br>attatttaggtgggccc	Other	<UL><LI>Arcot SS, Adamson AW, Risch GW, LaFleur J, Robichaux MB, Lamerdin JE, CarranoAV, Batzer MA. High-resolution cartography of recently integrated human chromosome 19-specificAlu fossils. J Mol Biol. 1998 Sep 4;281(5):843-56.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9719639">PMID:9719639</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:ETFB:NM:001985:1/6
0	chr19	61803373	61803676	1000320	0	-	Sb19.12; RIP_Alu_chr19_061_01	TTAACATCCCTGCAACCCATC	GATTATAGTCACCCTGTTGTGC	SINE	Alu	Yb8	aacttccacccaggggctctcagagccagattcgcctagagaaatgcatcttgattcaattctcctccagttctcctgacaagctcaggataaagtctca<br>agtggagagatatcttaacatccctgcaacccatcactcgccccttgaaacaaaagaaaagcaggagaataagatcctgtgatttgcaacaacatggata<br>aaactggaggtcattatgttaagtgaaataagccaggcatagaaagacaaactttgcaagttctcacttgtgtgagctaaaaattaaaacaaactcatgg<br>agatagagactagaatgatgaagaaacctgaggctgggaagggtagtggaagggtggggggaatgtggggatggctaattggtatt<font color="green"><u>AAAAAAATACAGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAAAATACAGAG</u></font>ggttgcagtgagccaagattgcaccactgcactccagcctggcaacagagcgagactccatctcaaaaaaaaaaaaaaaaaa<br>caaaccccaaaaaaacaaaaaaacacacacacaaagaatgaataagacctactatttgacagcacaacagggtgactatgatcaataataatttaatgat<br>acatttaaaaataactggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcaagacc<br>acggtgaaaccccgtctctaccaaaaatacaaaaaattagccgggtgtggtggcaggtgcctgtaatcccagctactcgggaggctgaggaaggagaatg<br>gcat	UCSC	<UL><LI>Arcot SS, Adamson AW, Risch GW, LaFleur J, Robichaux MB, Lamerdin JE, CarranoAV, Batzer MA. High-resolution cartography of recently integrated human chromosome 19-specificAlu fossils. J Mol Biol. 1998 Sep 4;281(5):843-56.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9719639">PMID:9719639</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:ZNF71:NM:021216:1/3
0	chr1	195278290	195278586	1000321	0	+	FXIIIB; RIP_Alu_chr1_193_01	TCAACTCCATGAGATTTTCAGAAGT	CTGGAAAAAATGTATTCAGGTGAGT	SINE	Alu	HS-1	gctgagagcactgtgttcagttactttcttcaacaactacttattaaatgcctatgtgtcaaacattatgctggaagtgctacaggtgatgaaaatgaac<br>aagaattattacactcattacaaaatagttgtgaaaatgaagtcgaatagcactataatttacgatgtcactgttctacagaacatgagatttaaattaa<br>aataaatttaaaagttgattcatggacctttaactttcagctatgacagaggagattatatcaaaccagcacttctattaagaaccagaaaatctgaaaa<br>acaggaagcatttcgaggtatcagaaaacctccaaggaacttagtcaaggaagtaaggttctggaaaaaatgtattcaggtgagttcaaca<font color="green"><u>TCTATGTGA<br></u></font><font color="red">GGCTGGGCGTGGTGACTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCATCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACAT<br>GGTGAAACCCCATCTCTACAAAAAAAAAAAAAAAATAGCCGGGCATGGTGGCATGCACCTGTAATCCCAGCTACTCGGGAAAGCTGAGGCAGAAGAATCT<br>CTTGAACCTAGAAGGTGGAGGTTGCAGTGAGCAGGGATCGCACCACTGCACTCCAGCCTGGGCAACAAAAGGAGACTGTCTAAAAAAAAAAAAAAAT</font><font color="green"><u>TCT<br>ATGTGC</u></font>catttttttctcttgaggtgtttgttgactctaagtctgacctgagaggttagatgatagagaatggtaagcttaggcatacagccagcagaac<br>ttctgaaaatctcatggagttgaagatagaaaaatgagaatttcggtaaaccaaagcagccaggacttgaagaataaagaatttagaaggataggaagtg<br>tagagatatgagtttgaggctctgcactagcttttccctaaggtactgcttatccttgacttgtatagaggcataggatgagaagccaagcagaaagtaa<br>ataaaaagttacagtgggcatttggcagtctcccagtaatatcagagacagtcaaggagaaaaagctttaatacacacaacaaaccctctgtaaaga	UCSC	<UL><LI>Batzer MA, Arcot SS, Phinney JW, Alegria-Hartman M, Kass DH, Milligan SM,Kimpton C, Gill P, Hochmeister M, Ioannou PA, Herrera RJ, Boudreau DA, ScheerWD, Keats BJ, Deininger PL, Stoneking M. Genetic variation of recent Alu insertions in human populations. J Mol Evol. 1996 Jan;42(1):22-9.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8576959">PMID:8576959</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:F13B:NM:001994:10/12
0	chr3	179593740	179593741	1000322	0	+	D1; RIP_Alu_chr3_179_01	TGCTGATGCCCAGGGTTAGTAAA	TTTCTGCTATGCTCTTCCCTCTC	SINE	Alu	NA	attcagttaacattactcaaattggcaaaaaaaactagtcatgcacaagacaattattactaatgtgtttaaacatccttaaatacgttctgtttcactt<br>ctttcactttatttggataatcaactccactttaattttccaatactgctaatcagggttcaatccccaaaagcaagtaaaactgagatgtcccttaatt<br>atcaagagatcctactcttcagatctgctgatgcccagggttagtaaaaaatgtgtcagtactcagattagcaatacttgtggtttattttacataaaat<br>acttctccactggtatttcttcattgattgatatatgatagctgatatcagtgtacatcaatccaaaatatgctgtggtagatttttgctta<font color="green"><u>AAAAATGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAATAAAA<br>AAATAAAAAAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGG</u></font>gaagaagtagatttcggcaggccaatgctgcccctgagaataaaaagaaaaaaagccacataa<br>catatggtaatcatctgtttgaagtcttcacactgctacaacagaaaagagaaatggaaaaaccataactccagagagggaagagcatagcagaaataca<br>cagaattctgtagttatatttacccttgtggcttttggcaattttgtgcatgggccaaaggatgaatgttatatgtgtagattaaatgatatccagatac<br>ctggtaaaacattatttcttggtgtgtctgtgagggtgtttctggaagagattcacatttgaatcagtagactgagcaaagaatatccatcctcaccaat<br>gtgggcagcatcatgcaatccattgatgg	Other	<UL><LI>Batzer MA, Arcot SS, Phinney JW, Alegria-Hartman M, Kass DH, Milligan SM,Kimpton C, Gill P, Hochmeister M, Ioannou PA, Herrera RJ, Boudreau DA, ScheerWD, Keats BJ, Deininger PL, Stoneking M. Genetic variation of recent Alu insertions in human populations. J Mol Evol. 1996 Jan;42(1):22-9.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8576959">PMID:8576959</a>.</LI><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID:7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chr6	12207408	12207684	1000323	0	-	HSC37; RIP_Alu_chr6_012_03	CTACATGATGTGGGGTGGGCCTGCT	CTTTGGGAGTCCAGCCCACTGTGAA	SINE	Alu	Ya8	aaagcaatctagattacatatctaaccacacttaagaaatcaaagcaataataacgcactgtttacaaatcctgcctgttaagtaaaggaatccatcctt<br>tctgacacctctaccatccatcatcgattcaataaacatttgtcaaatgcctactacatgcactaagaactgtagtaagtgctgtgctatgactgtgggc<br>aaaactgtataggggaagatgtgaggagaccccaggcagaggtgagagggtgagggtgtggagaagtgagttgcatctatgttaccacgttttttcttca<br>catataagggtcatgttaaacagttactaaatggctaactacatgatgtggggtgggcctgctgaaataaacacactcctccaggcc<font color="green"><u>AAAAACTCAGTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAAACTCAGTGA</u></font>catttccctc<br>tggctcctgctccttcacagtgggctggactcccaaagcgtctgctcctcgggctcctgcagtccacctcccaccgcagatcaggccatgcatgaatgtt<br>actacatacatttgttttcattgcaatgcttttaagtcctcttcttgcccttcccactcatccacagaatcttatttgctacttccaacgcttttcttaa<br>ataaaataattttataccccattgcttggtggtcagggaaaaattctaagctacatccttcaaagtttgataaatttcctgcatatagcatagctccaca<br>aaataccctttgcacagtgaagcaataaaagaacaccatattgttggttaaatactttgttatctccatgctttgct	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID:7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:HIVEP1:NM:002114:3/9
0	chr1	114186965	114187255	1000324	0	+	PV30B; RIP_Alu_chr1_114_01	GGAAAAGAGTATGGCTGTCT	AACCCAGAAGTGGAATTACA	SINE	Alu	Ya8	aatcccagcactttgggaggccgaggccggcggatcacgaagtcaagagattgagaccatcctggctaacatggtgaaaccccatctctactaaaaatac<br>aaaaattatctgggcgtggtggcatgtgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcattga<br>gccaagattgcgccactgcactccagcctggcaacagagcgagactgtgctcaaaagacaaacaaataaacaaaaaacagaaaataaaaagtgttggcca<br>ggatgtagagaaattggaatccttgtgtactgttggtgggaatgtaaaatggcacagctgctatggaaaagagtatggctgttct<font color="green"><u>AAAAGAAAACTAAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAAGAAAA<br>CTAAAC</u></font>atagaattaccacatgtaattccacttctgggttatacccaaagtaattaaaagcagggatacaaatatatatttgtatacccatggtcatcac<br>agcattacagcagccaaaaagtggaaggaactcaagtatccattgatggatgaatggataaacaaaatgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtg<br>tataaacatatacaatggaatattattcagccttaatgagtaagaaaattgtgacacgttacaacatggatgaaccttgaggacattacgctaagtgaaa<br>taagccagacacaaaaggacaaatactatatgattccacccatatcaggtacctacagtagtcaaattcatagagacagaaagtagaagga	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID:7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:PTPN22:NM:015967:11/21
0	chr12	12908916	12909215	1000325	0	+	PV1C; RIP_Alu_chr12_012_01	TAAGCCCCATAAGGAATGAGACTG	TGTTAGGTACTTTGCTTGGTGCTG	SINE	Alu	Ya8	gatctttggagaaaggcatggcctggcaggctctgcatggtgccacaggcctatctagctcctgtctctcctgcatttccttccctactggctgctttca<br>ctctttaagctcctgcccaccccagggactttgcacatgctattttttctacctcctctgctcttctgccctctttatttaggcaacttctactcatcct<br>tcagatcccaggtcaagcatatccttcttcagggaaggtttgcttgacatcgctgatggggtcaaatcctccttttagaggctatcaccacacgctgcat<br>ctgtattttataacacttgtcacagtattatatttgtctggttctttgattgatatctattactctcactagattataagccccat<font color="green"><u>AAGGAATGAGACTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGGAATGAGACTG</u></font>aatctatttttactcatcattgtgttttcagcaccaagcaaagtacctaacacataataggcactcaatgaacatttgtggaataa<br>actgaggaataagtaaagacagaagatctaaaacatgaagggggctacagataggaaagggctggggagggaagaggagatattcaagagagggaaacga<br>aaccaatgaggctacttgtaagtgatcttgcagtgtaaatgagctgaacacaaacaaacccccaaagcggcagtccatagacccatagaaatggtgacag<br>tgcctgctgagttggttagcctaccccacacttctattcattgctaaaggcatctccacatatagataaccgctcactaaattttgcttttgctcaggaa<br>	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID:7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr5	9830994	9831290	1000326	0	-	A6; RIP_Alu_chr5_009_01	ACTACTCACCAGCAAAACACCTG	GCAGCTATAGCCTTATGAAAACA	SINE	Alu	Yb8	atgaatgtcactgaactaaataatcgattgtcaatgtagacaaaacaaccttgtattggaagaagatgccatctaggactttccaagctagagagaagac<br>aattcctggcttcaaagctttgggagacagattgattatcttgttaggggctaatgcagctggtaactttaagttgaagccagggctcatttaccatttt<br>gaaatcctagggcccttaacaattatgctaaatctactctgcctgctctgtaaatgaaacaacaaagcctgaatgacagcacatctgtttacaacatggt<br>ttattgaatattttaagcccaccatcgagatctactgtttaggaaaaaaagaaacttttttcagaatattactactcaccagc<font color="green"><u>AAAACACCTGGCCTCCC<br></u></font><font color="red">GCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAAACCATCCTGGCTAACAAGGT<br>GAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAA<br>ACACCTGGCCTCCC</u></font>aaaagctctgatggagatgtggagatgtacaaggagactaatgtcttcatgcctgctaacacagcatcaatctgcagcccatggat<br>caaagggtaattttgactttcaagtcttattatttaagaaatgttttcataaggctatagctgctatagatagtgattactgtgatggatctgggcaaag<br>caaattcgaagccttctggaaaggattcacccatctagatgtcattaagaacacttgtgattcatggaaagaggttaaagtatcaacattaactggagtt<br>ttgaagttgattccaaaactcatggatgactttgagggattcaaggcttcagcgaaggaagtaatggcagatatggtgaaaatagtgggagaactgg	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID:7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:LOC285692:NR:027112:4/13
0	chr8	42159064	42159065	1000327	0	+	TPA25;1104685157154; RIP_Alu_chr8_042_01	GTAAGAGTTCCGTAACAGGACAGCT;NA	CCCCACCCTAGGAGAACTTCTCTTT;NA	SINE	Alu	Ya8	gtggcaccagggcttggcatccccatcaggattcctaaatgataagagagtttaaggtttcctttttatcttcttattttttaatttttgtagagatggg<br>gtcttgccatgttgcccaggctggtcttgaactcctgggctcaagcaatcctcctgcctcagcctcccaaagtgctgggattacaggcatgcaccaccac<br>accaggccaggagtttaagattttcaatcccattttcagccacatcacaggccatgtaagagtagaaggagactcagtcaaccaatgaaaaccactgagc<br>tgggagggaggacaccgagttcatcttgaccttgcagcacacccccaccctaggagaacttctctttaactttgttacccagtcagtaat<font color="green"><u>GTAGTGTTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTGGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>GTAGTGTTCT</u></font>aatctcatagggttgtcagacagaactgtgagctgtcctgttacggaactcttacaaatcattgcaataaagatgtcaggagaacagct<br>gaggactaaatggttacaggccaggacccttaacttgggatttaggttggaaaactggtagaccttgcttttcacaatatgtgttattctagcaagtgaa<br>gaggttggattagataatatccatgggtgcttcccacgcactgggtctgtcatgcaacttgagacattggatcttcccccgtctcacaccctaatcccac<br>gttctgccaagacctgaaccccccacccctgtgctacctaccggcagtaattatgtttgcccaggcccagtgcctgggcactggggttctgtgctgtgta<br>a	Other;Venter	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID:7714898</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA;NA	NA;NA	NA;NA	NA;NA	Myeloproliferative disorders;NA	intron:PLAT:NM:033011:7/13
0	chr19	44791223	44791519	1000328	0	+	HSC4N5; RIP_Alu_chr19_044_01	CATCCTTGGCAACTAGTTCCACTCI	ATCATAGACACGGTGTCCTGATCAI	SINE	Alu	Ya8	tccaactcaacagcaggactgggtgaacacatagaaactgggaagctgtctccttcaatacctcaccttcccatgcatgacattaatttcctaaaatcag<br>gagagtctcatggttctgggacttaataaatggtgattggctttcaccaaagaaagcctttcaaaaggctcatggagaaggtgcacagcatcacaggact<br>tacctttgaatggcagacagtgttacttctaaggttttacattgatcaaggtgagtcatacagacggccctaatcaaaaggagaggactccacaagctgt<br>ggttattgtgactgtagtcatgaggggccatccttggcaactagttccactcagaactagttcccacataccgaaaacactaaccatgt<font color="green"><u>AAGGAATCTCA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>GAATCTCT</u></font>gaaggcattacaattgcaaaaacaggctcagagtaaagtgcaatatcttatctgatcaggacaccgtgtctatgatgtgactacaaattatc<br>acttgcaatcccctgcaacatgtgcaccaagggggcacattatctgctttatactaatcaaagaagactgaacgagacaggaaaagtgcaatgaacacat<br>atattttagatgggcaaaaaaaaaaaaaaaaaaaaatagacagcagtcactaatccatatttttgctgaaaccaaccagaaaactatttacattttctct<br>gggaatgtttttctgtagcacttgtccccaccctccattctcagtttcttggagttcctaccaagacggcagaatgacagcccttttcccactataa	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID:7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr11	29704862	29705179	1000329	0	+	5F4; RIP_Alu_chr11_029_01	CAAATTTTCCTTCAAGAAAATAAAAC	ACATGTATGGTATGTAAAAATTTAG	SINE	Alu	Yb8	tctagtccacaggaagacctgaaccactgtcgccttcacataggttaactcggaaggcaaaggagctttgcctaagctggtggaagctatcaggacaaat<br>tgcaatgacagatacaatgagatccaccgtcactggggaagcaatgtcctgggttcccagatctgtggctcacattctcaagctcaaaaaggcaaagact<br>aaagaacttgccactaaagtgggttaaatgtatgctgttgagttttctctacataaaaaaaattaaactacaaattttccttcaagaaaataaaacataa<br>attattgtttttataaattacccagtttaaggtattctgctatagtgggacaaacaaactaaaacaaaatatgcctactatt<font color="green"><u>AGAAAATACTCTTTTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAATACTCTTTTTTG</u></font>ttgcatatacatgtagtccagttgaaatatgttacaaagagaataagtgtttcctaaattttca<br>cataccatacatgttagtttgccatacacataagatccatctatagatctccttaatttccttaataaattcagaagaactttactgaagtacatatttg<br>gtgccactatggatatcaaataatataatgctgcatgatgatgctgcataactcctacttattgaacatttataatgtaccaggtagtatgctaagtatt<br>ttgcacataatttaactcttgcaccaacactggaaagtaggtagttcaccccatttttgcaagaaaactgaatcttagtaaaccttagtaaagaaagtga<br>tacagaatagaattttaa	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID:7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr14	80162280	80162590	1000330	0	+	A3; RIP_Alu_chr14_080_01	CCCCAAAGATAGTCAGGTTCTAA	CCTCCTCCATTCTCACTCAATC	SINE	Alu	Yb8	tccttctttcctctttttcttttttcttccttatttcttttttctcccttctttcttttttctctttctttcctttctttctctctttcttctttctttt<br>tgttactcttgtacagaagaaatttttaccatatcagattagttctctcattcatgccaatatcaagtgagcctgtattactctttaaaaagtcataaaa<br>tactaaatggtaacactggtatattgaataatcagccccaaagatagtcaggttctaattcctggaatatgtgaatacataactttacaaggcaaaagag<br>actttgcagattttaaggatcttgagatgaaaaaattagcatgggttattcaggagatccctaaatgtaatcacaattgtccttatt<font color="green"><u>AAGAGTGAGACAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCACAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAGTGAGACAG</u></font>gggagacttgaccacatagaggaaaatgcaatgtagtgacagaagcagagattggagtgagaatggaggaaggggc<br>cacaacccaaggaacatagacaaccactagaagctgaaaagggcaggagaaagaattctcccctcagagctttcagaagcaaccaatcctgccaacacct<br>taactttaggccagtgaagccaatttcagattcctgacttcaagaaaataaacctagaccaagatggtgaaactccgtctctactaaaagtacaaaaatt<br>agctagatgtggtggcgggcacctataatcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccaaga<br>tggtgcaccat	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID:7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:C14orf145:NM:152446:18/24
0	chr10	4624812	4625120	1000331	0	+	238920; RIP_Alu_chr10_004_01	NA	NA	SINE	Alu	Ya5	tgttgcattttggcaaatgatatatctgcatctaataagattatcacatgaatcttctcttttgttatgtcaagatggtggatttcattgctttatgaac<br>aaacacctttacattcctgagataaaggccatttggccatgacacatttttatttttacaaattgctggatttcatgttccaatttaacgttttgctact<br>tatctgtttaaactctatcggtctcagttttgacctctgtaaaatgcattaattgggctttaacaatggtatttttgtaaaacaaaaatttactttacaa<br>ttatttgaaatataatttttctatggtcttttccagttttaaattaattagtttgaactatataatattgatattcaatctctattgaac<font color="green"><u>AAGAAAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAAAAAGA</u></font>ataatttcatacagttcagcttaatagattaattctaagattttattgcagaaaatctctttctaccttgaaaacaggagg<br>taattttatgaacttgatttttaatcttagctggagtaaaattgtggtagaacatacactagctttgtaatcttgtgcatgttactgtataacgatcagt<br>ttatttgttcataaaatagggatagatagaatatctactttgtgggatagttgtcaggaagtgaactccctggcacatgccttacacatagtaagcactc<br>aggaaatcctaactatcttttatattatcattatgattatgaagtgctcttgtcctttagaatatcctggacaagatggttaatgggctgtacatctatt<br>attcaggta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	20172023	20172024	1000332	0	+	16184; RIP_Alu_chr10_020_02	NA	NA	SINE	Alu	Ya5	ggtgaatttgaaggcagctaaacacattgcaaatttagaagaaggatgtaggtcttaacttgtggatagacttttcctcgtatatgggttaatgaatatc<br>cttctctctcttgtgaattcttattaatataggccataaatggagctttcttttttgctctataaagccttcttatcttttgacgtcatgtttatattat<br>ctgatatgatgtaaacaaatctgacaggagtaactaaaaaaagcagtgcacagctaaatgtattcagtgtttattggctgatatgttttccccacatagc<br>ttcaatttaaaaatatatttttatcctttattacatatcctccttcttagtaatgcttttaacttatgtcatatttttttttctata<font color="green"><u>AAAATTTACCGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTTACCGGA</u></font>acaacgatctgccactgtatctacagcattttggtttcccaccaaggtagttttaaatcacatttagctca<br>attgacttatttatgaatactgtttgaaaacagtgtttatgtggtaaacatgcttttcattgctgcattttaaaagataaatgcaatggaatacttattt<br>ttttgtttcacaatttaaagctaaggtattaatttgataattattcaatgtcaatttatccaatatcgatttattctcatgttctttatttgtaaagttt<br>ttctgggtttccaaagagtctacccctgttatcgtaggattcctccataaggacaccatccacgggtaccactgagagcttctggctgcattaagatatt<br>ttctagtgaagaagaa	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PLXDC2:NM:032812:1/14	
0	chr10	25075198	25075288	1000333	0	+	12468; RIP_Alu_chr10_025_01	NA	NA	SINE	Alu	Y	gattgaaaccattctggctaacacggcgaaactttgtctctactaaaaatacaaaaaaattagctgggcgtggtggcgggcgcctgtagtcccagctact<br>caggaggctgaggcaggagaatgacgtgaaggcgggaggcggagcttgcagtgagccgagatcgtgccgctgcagtccatcgtgggcgacagagcaagac<br>tccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaactgaaacaggggctgagcatggtcgctcatgcctgtaatcccagcactttgggaggctaaggtgg<br>gtgattgcctgagtccaggggttcaagaccagcctgagcaacatagcaaggcatccgtctctaaaaagaaaaaaaaaaaaaaactgaagcagct<font color="green"><u>AAAAAA<br></u></font><font color="red">AGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAA</u></font>tgt<br>atgtgggaagtggctggtacaggagaaagttgggagcattaagcagatgaggtgagggggagaatggcctctataacacgctgttaccatcacttagtag<br>gtatgggattttgaggtaaccccacaaaggctaattcctcctaaaatccgtgtctgcagccttgctaacagcatgtgacaaacagcactgagcatagcca<br>gctgtagatgatacatctgagagtcttttgcaaacagatattctttttcagtataaatataattcttgattatagcaatgtataaaaatatacgatcaca<br>atctgtaaacaaaacaaagcaacaacaacaaaaattcacatgcatttggatggttactagcaaaaaaaacaaaaaacccagaaaataacac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	25138096	25138425	1000334	0	-	238040; RIP_Alu_chr10_025_02	NA	NA	SINE	Alu	Ya5	ataaaaataaaaaaaattttaaagccattgcacagttttctctgctgctggaataaatggatcttctgctagctctaattgccctagtaaaagaatatta<br>tctttgaccactgatcctaagaacccaaattccctgcaattcctttgctaaaggaaatccctgtcttctctccatttctggcccctgaatgctatttttc<br>ttacaaccaacaaagaagagtataaaggtgtttatggaaagagcatccctgtgagcccccttttcctgggacagttattcttttcccaaacagagaaggg<br>ttcttttaataatcaagttaccgatttattctaaactctcccctcccaactgatatttgaaggttggaatggcattaaaaataacatcacat<font color="green"><u>AGAAAGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGCT</u></font>aattatgttccacttcccacccgtccttcttgccaagtaatcttgggttttgccaccttgtt<br>tttttattttttgaacattaaaaaacagaagaagacgagggaggcagcagagaatgggaacagattaggctttaaaatagaactgtcaagatggttcccc<br>gcaggctctgttctgatctagcaattggtaacttcagatccacttgctttcacaagcgtctggatagcagtagattgagcagcaattaagggatagagca<br>ttaagccgaatgaacttacttttctagcattaactatggcttttcatggtttccagtgaaaaataaatttaaacaaacttataaaatatttacgtgaaca<br>aacaacatgtgaaaaaacaaatttatagaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	29142535	29142536	1000335	0	+	16220; RIP_Alu_chr10_029_01	NA	NA	SINE	Alu	Ya5	ggcccacgcttctcattacaaaaatatgttctgacactctgagtacttgtggctgggctggagaggcattgggccctgggatctcttgccagggagacaa<br>cccccctgcaactttgtgctaggtaatcttctgtcccctcttgtgtctcttctttccagtctggaccttcaaattggagggggtgaggagaaccctaaag<br>cccaggcatcgatggggaattctggagacaaaagctaattaaagttcatttcaaacctgtggggagaaaaattctagacataaacctaatgtaaagaaac<br>acataaaattttattggaagacaaaagaaaagtggaatgagcacacatatcatgtttttggatggtaagaataaaaattgtgaaag<font color="green"><u>AATAGATGATTTAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAAGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AATAGATGATTTAG</u></font>attcaatgcaacctcatgaaaaattacaaagggattgttttagtccattttatgttgctataacaacaccacagactgggtaatt<br>tataataagcagaaatttgtttggctcatagttctggaggctgggaagtccaagagcatggtgccagcatttggtgagagccttggtgctgcatcatccc<br>atggcaggagttgataggacaagagagagggctagagtaagacagggaaggtgatccaaatgtattcttttatcaggaatccactcttgagataactaac<br>ccactcctgcaataacttcattaattcatttatgtagtgccctcctgacctaatcacctcttaaaggtctcatctctcaacattgttgcactgggcttta<br>a	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	33532661	33532935	1000336	0	-	Yb8NBC157; 265; RIP_Alu_chr10_033_01	TATGGTTCTCAGCCATCACG	ATTCTTCCCCAAAGGGAGTC	SINE	Alu	Yb8	aaagtctggattgcaggcctgagtggcatgtatgttatttgcacttggtgacttcttagttattactggtgtgtatctttgggccgttgaagaagttgaa<br>acttggctctgtttctccatgtgccgtaactctgcttggtgtttcagcaccattcagtgtcaaatttttactaagaaagcagcagttactgacacattcc<br>tactggcgagaagagaacaggccccagccaccaacatcttgtatggttctcagccatcacgagaactatccattatctcaagtcttgtaaagtgaaacgt<br>aatgccaaaaactgtaaaatattaaacagattgcaaaaatgagtaacaggctaaaaaaaatatctgaacgaaatttaaaggacttc<font color="green"><u>AAAAGCAGTCTTTG<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGC<br>GCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGCAGTCTTTG</u></font>attaatattgg<br>atacctttcaactgcaaattcaaagatatgggaatacctgtgaacagtggaatgcagtcctatgagagttcatgtaaaatgaccccgggacatctgagac<br>aacttctctcacacacctgccctggagagagggctcacagtttgagaagctacttacagagaaatggaatcactgtttttttagtttttttgtttttttt<br>taaaaaaacactattgcactaaatgtgaacgttgactccctttggggaagaattataatataaacttagcaaacatagtcaatactaagaatataaaaga<br>atttatgacaagtgagtgctctaacaccttgaaaatgaaagggaaaacgtttcaagcaaaatctctgtcttcaaa	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	712	423	NA	intron:NRP1:NM:003873:10/17
0	chr10	34724490	34724799	1000337	0	+	12346; RIP_Alu_chr10_034_01	NA	NA	SINE	Alu	Yb8	tcccatgtagctgggattacaggcacctgccacaatgcccagctaatttttgtatttttcatagagacagggtttcatcatgttggccaggctggtcttg<br>aactcttgacctgaagtgctccacctgcctagacctcccaaagtgctaggattacaggcgtgagccactgcgcccagccgatggttctcatttaaatcag<br>gaggaaatgaaatgatatggatgaaataaaaattgattccaaggtaatgaaacgttttaggtaaatgtttttctactaagaaaataatttaaaaaaagaa<br>atcaccaaagtaatgaaaccgtgaacgaatatagatgaggatcagttaactttatttttgaataacatatacaaggaaataactc<font color="green"><u>AAGAAAAACATCATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAAAACATCATC</u></font>atggggaagataatattgtctctctacctatttgtctctatttctacatatcagcaggtagtcaactaagacagg<br>ggttggaggacgagctaattgtcattaatgcccctgattgaaaaacattcaacctagtctaaaaaatagctttgaaagtaagcagtgcaagattcttatt<br>ttaaaaaacttaagccagccatggtggctcacacctgtaatcccagcactttgggaggctgaggccggcggatcacttgagatcaagtgttccagatcaa<br>cctggccaacgtggtgaaaccctgtctctgctaaaaattcaaaaactagccaggcatggtagcatatgcctgtagtcccagcttctaggaaggctgatgc<br>aggagaattg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PARD3:NM:019619:7/25	
0	chr10	46508392	46508709	1000338	0	+	239115; pAlu10-46955146; Ya5ac1982; RIP_Alu_chr10_046_01	GTGTGTGGAGGTGCTTCAGA	GAGTCCTGGAATTCCTGCTG	SINE	Alu	Ya5	ggggtggcaccccagcattcctggctttctggggtccagataggctggcaagagctgtttttgcatccatttgcatcgtgaagactggcattttgatact<br>tcagctgtttgttcctgggagaattctgagcacagattccagaggtcacagtaagccttgcagcttgagctgaaagatgccagagccggagatgtctgct<br>ggcagcaggcagggttcattctggtgacacagcaacagatgcctggcctgggaacccagggatttcacctccaccagtgagaccacggggccactgtggg<br>gtgagggaaggagcgcttggagtcagagctctagaccttggtcaactcttcacctctgtgagagatggtgtgtggaggtgcttcagaagt<font color="green"><u>AAAGAATTCT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAATTCT</u></font>gtggatgcaaagcagtgggattactgttagatcattagcgcatccagctgaagacaatagatgcagtagtct<br>tggcttacagccctctgcagcaggaattccaggactcacttcctactccatcccttttctctatcactgtgtcttccaccttacatggaaatcagcctgc<br>aagttcctctcctcgatgagatggcaagcgccttgcaggtgaaatccataccatcatggggcttgtgtcttacatgccatggacaggccctggcacaagg<br>agagagctccagggaagttttccatggtgggttgatggtaaaggtgccactcactgctgaatgtttggtgctggacaggagtccagcatgggaagggggc<br>cagggctcaggctcctgc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	470	148	NA	downstream:PPYR1:NM:005972
0	chr10	49587177	49587485	1000339	0	+	pAlu10-49809478; 239156; RIP_Alu_chr10_049_02	NA	NA	SINE	Alu	Yb8	ccaacttgcaaacactgctcctgtgtgcacttagagatgagctcttgtaagcttggggacttaaagggtcattttgagaataaaatactctaaaaatatc<br>aagtataaaccaaataatgcttagaatgaggaatctatccttacagacccatcatagaaggaagttctagatatagaattatgtgcctctacaaatacca<br>gtgaactatttacatctcttttatgtatgcagccttttaaaagagaagcagcaacaagtgaaaaaaaaacaaacaaacaacaccccccccccccaaacag<br>gctttagtgtgaaagtttgcatttcaacttgacgtctagctgcctgtatgcctttggcccagtttccttacttacctagagagaat<font color="green"><u>AAGAGCACACATCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAGCACACATCT</u></font>gtctgtgtggctgtaggagagtctgtctgagtcttgtgtataagaccccacagtgctgggcacacactagattgtga<br>acttgtattaatcacatctaaatctgaatcccctttttaaaaaggcttccttattttagtctgtttcagattcttaggggaaccattttcaatagaaact<br>gggctgagtgagtacagtaccttatccacagccagaatcatcaggaagtgatgtgacaggaatgttcacttctatttgttctgaattcagatctgctttg<br>ccacggcatggaggcagaagatctttcaaaggctgaagacagaaatgaagacccaggttccaaaaatgaagggcagcttgctgctgtgcagcctgatgtc<br>ccacatgga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:WDFY4:NM:020945:1/62	
0	chr10	54111216	54111520	1000340	0	-	2730; RIP_Alu_chr10_054_02	GGGAGGCGGAGCTTGCAGTGAG	CAAAGAGTGAACTAGAATCCAGATC	SINE	Alu	Y	cacacaaaaagtaacagaaacaagataaagtcctgaggaggatccaggtgtaggatcccatctttgctgacactaactttgctttcccatgttcaagttc<br>tataattcaataaatttttgagtaatccagttagatctggatttttggtaaatgtatcaaaaatgtttactattacaatataataatgtatatttagaag<br>ataatgaggttgaaagattaactattttcctcaaggacatacatgtagtaagtggcaaagagtgaactagaatccagatctttctgactgtgttgtcttt<br>gatcttaacaaataactgtattgtgaaagctcaaggacagcactgaagttttataaatgggagagacatttcagtgggatgggagttt<font color="green"><u>AAAAGTAGTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAGTAGTTGA</u></font>gtgtgctcttcccctcctcttttgttttgttttgtttgtttctgagacggagtctcgctctgtcgcccaggctggagtgcagt<br>ggcgcgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctccggagtagctgggactacaggcgcccgccaccaaa<br>cctggttaattttttgtattttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtaattcgcgcgcctcggcctc<br>ccaaagtgctgggattacaggcgtgagccaacgcgcccggcctgttttcttttatttatttagtttttcagccccctgtcctctcttacctttcagaaca<br>acttc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr10	56187045	56187346	1000341	0	-	10911; RIP_Alu_chr10_056_01	NA	NA	SINE	Alu	Yg6	aaataatataaagcaatgaagggtcttacagtgagtttttcaggcatggctgtattcagagacccaataagacctcctgaggaatctgtttcttttgatg<br>ccttttgcttgcatcccatgatgtttggctttaactctcagtcaatatttgtccatgcagctatatattaaggctgctgacaactcaacctaaattcata<br>attgcaattactaaggaaaggagcccttctctctctctctgtctctctctcggcataaataaaactttaaggaataatctaattggtcttatttaggtct<br>cttacttgtcattgttggtgggcatagcactgtgactaccataaagaaggcaaatgaagtagttttctaaaggaaagccaatttttaag<font color="green"><u>AAGGTAGAATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTGACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGGTAGAATT</u></font>ctgagcaagccaaaaacaggtgatatagacagaaatttctcatttcttagcagtttggcatacacatgtatgtttctaataaggaca<br>gttacaaattgtccccagctaatagaacacaactatcttaactacaactgaatataccccggctggaagcagaacattcataaagcaaatttttatattt<br>ctcctttatatctcatgctatcaaaagacatttactatcatgttttttgagacatatggtaatccaattgggagcttgcttcataaagccaagcatcctc<br>tgtcttcaaatacaataataggaagtccaaatactaatcacgttaagacacagctccctcctacttaggaatttcatttttattgacataaattgcactg<br>tg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PCDH15:NM:033056:1/33	
0	chr10	57644640	57644641	1000342	0	+	3538; pAlu10-57867033; RIP_Alu_chr10_057_02	NA	NA	SINE	Alu	Ya5	acccgtgacagtattgtttaaatggtaatgtctgtaaattggttctgagataatttcaagtaagaggtacaatctcagtgatttacaaaacaaaaattta<br>tctgttcttcatgtgaaatccaaggcaggattcttagttgggtagttttcgtacttgctatcatttagataagcctaagggactttgtttcaatagtctc<br>aaaatccattcctaagcaaattattctagttccagttggtacaaatttgtcatagccttcatttctttgatggataatctctttcctcccatgtggggac<br>agtgttactttcatcaggctctgccattacctatcaattataatctagaaccaatgaagggagacaggggcatcttttcaggggaat<font color="green"><u>AAGAATTTTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAACCCCGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAA</font><font color="green"><u>AAGAATTTTTTT<br>T</u></font>taaatgaagcttttgtatagtctccacgccataggaagcagctatattttagcaagggaaagtagggatttttaatctcatagagttcaaatgtattct<br>ggtgtttaaattattatgcatttatcttcctgtattaaaataagtatttcatgcaccccataaatatatgcacctactatgtacccataaaaattgaaat<br>tgactaaaaaaaacgaggggctgggtgcagtggctcacacctataattccagcactttgggaggccaataggacaggtcacctgaggtccagagtttgag<br>accagcctggctaacatagtgaaacaccatctgtaaaaatacaaaaaattagcctggcatggtggaatgcacctgtagtcccagctac	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	78470918	78471223	1000343	0	-	54645; RIP_Alu_chr10_078_01	NA	NA	SINE	Alu	Yc1	actggctgccagcaagatgccttttaatacaagataagcacaagccgttctaaagagccacttcctgttggcggggtggcttcctctcatcttcctctta<br>cccatgcccccactggaagggaagcctgagaggctgcagccaaagacacacagcttgccctccttccctcagggaggcctgtgagatccctaagctccca<br>tagcggctcaacgttctccttgtaattcaccagtttctaaagactgactccattgtaagccggtagcagtggctcatgcctgtattttgggagcattttg<br>ggaggccgaggcaggcagatcacttgaggtcaggagtttgagatcagtctggccaacatggtgaaaccctgtctctaccaaaaatacaaga<font color="green"><u>AAGAATTAG<br></u></font><font color="red">GGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAA<br>ACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC<br>CTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAATTAG</u></font>ccaggcatggtggtgcacacctgcaattccagctactcaggaggctgaggcaatagaatctcttgaacccagggggcagagattg<br>cagtgagctgagatcccaccactgtactccagcctgggtgacagagcaagactgtctcaaaaaaacaaaaaagaagattcactacattgtgaaatccttt<br>cagagatgcctagcatgaagagggttgctgggaaaaccagctaaacttgactacttagaaaaaatgcatattttaatgaaatttggagcaagacctctct<br>gaaactacattttacttttgtgatactccttttgaaatttggagcaagacatctctgaaactaacattttaccttttgtgatattccttggggggtcaga<br>aaaatc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:KCNMA1:NM:001161352:14/28	
0	chr10	84390753	84390885	1000344	0	-	pAlu10-84531890; 30847; RIP_Alu_chr10_084_01	NA	NA	SINE	Alu	Y	aatgtttcaggctcatcttatacaccagacctaggattagccatttgtctaagaaaccctgcttttttgtttctttacttgcttgtttctttacttgttt<br>ttagtgaaaaaatagcattgcaagcccataaatagtgtgggaagggtggtctgtttaatattttaactagaaatggaatatatgagacattatatacaat<br>aagacactttgtgaaagaaatacagacatacacaagcgcacagatcacaaatataagcttagaaaactgacaaaaaagtttctaaaatattcacaaagac<br>tttatttgggtagtttagtgattagcaacaattttattttcatatttatatgtatctgtatttttaaataagtatacattactt<font color="green"><u>AAAAAACGACAGACTG<br></u></font><font color="red">CTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCT<br>CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAACGACAGACTG</u></font>aaaaatttaaagaccctaggttttgtagtaagcattttatattatgagaaa<br>caaaattactgcaacaattcctatcaaatcgtacaagttgtcctcaaaagaatgtaagcatttgttaatatttgcaaggcactttaaaaataataggcct<br>atgaggcattatttcatttagtttatgacatattaataatgcaccttatttatctaccacttgaagtagagcttaatgaattaacataatatccaatcat<br>gtttaatgaagagctttaaaattactcatctaaatgattgtcataattttttaataataattatatttagcacttttattgcatttttttccttgaaagt<br>attttgcaaacacctagttaatacttaatacat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NRG3:NM:001010848:2/9	
0	chr10	85616213	85616404	1000345	0	+	Yb8AC1538; 7773; RIP_Alu_chr10_085_02	TACTTGGCAGGGACCATCTC	AACATTCCTCGATGACAGCC	SINE	Alu	Yb8	agccagactttcggtggctccccacagctgaaggataaattacaagctttataacctgacacacaaggctccagaagatcaggtcctgcctgtcattccc<br>aagcacccctacagaaatgcattttggctcattgaactagacccatccctaagtagcttctgccccagtcagtgactccctcctccatgtgcccagctat<br>gagacacacaccactctgctctgtaatgactcaactacatctgtgtttctgctacttggcagggaccatctccccacatccactgtgcttatcacagtgc<br>cagctcatagaaggtagaaaatacagcacaaaacaaatcagtgtgacctcagagtggggctactgaatttattgacataaggaat<font color="green"><u>AAAAGAGACCTTGGG<br></u></font><font color="red">CGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCAC<br>TGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAGA<br>CCTTGGG</u></font>gacgagcttgaactttaccctgactgcttctttgatctcagcctataaatctttcatagaaattctcgtcttccccctcctcatggtaggagg<br>gtgacaggtgcaaccggctgtcatcgaggaatgtttatgaatgatgacaagaacccaggacttgaggagtgttacttttgggtgttattttttaactcca<br>gaagacagcacctatgaaaaatattttctgatttcactgcctctatgcataaataaataaatacgaggcaacttgatttagtggaagaaccgcagacttg<br>gttgaacagatttgatttcagattctagctctaccacttaatggggaagtagggtgataggctataaaattgagacattatccactagccca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	483	276	NA	intergenic
0	chr10	99098282	99098598	1000346	0	-	pAlu10-99239422; 2521; RIP_Alu_chr10_099_01	NA	NA	SINE	Alu	Ye5	ccggctaattttttgtatttttagtagagagggggtttcaccgtgttagccaggatggcctcgatctactgacctcgtgatccgcccgcctcggcctccc<br>aaagtgctgggattacaggcatgagccaccgcgcccggcctcttcttgcacatttcttattctctctctctcccttacacacacacacacacacacacac<br>acacactctctctctctctctctctctctctctctctcattgggcatttattctgagcaaaggacttccaaaaagacatttggtgaggggtgagagatag<br>agtagtaagcaatgcaggcaggatccttgccttcactaagtttatgaggagccagaacaaataaataaaaaatttaataaaacacatgatt<font color="green"><u>AGGATAGTG<br></u></font><font color="red">TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AGGATAGTG</u></font>ctatgaaggttcggcatggatatcatgctgggtcctggtttgggcaagtgaagggagccatagcaggagggcct<br>cttggagtggcatttagctaagacctggaggatgagtaggctttagggtggcaaacaaccaaggctcctacatttccagaaacccgggaccaagggcagc<br>agtcacttgcagcttggaaggtgggctggggctggactcatgtggaagctttgtttgcataccaggcttactgtttctacttagactgtgtttatgtgtg<br>tgtgcagttggggttgggagcattgctgttaaaagtgcctcactttggctgggaatggtgactcacgcctgtaatcccagcactttgggaggccaaggca<br>ggcagatcacctgaggt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	105087530	105087826	1000347	0	+	4387; RIP_Alu_chr10_105_01	NA	NA	SINE	Alu	Ya5	ataattcagacttaagaatatcacatgttgattcttacaacaatcctttgagttgctattgtaacctccagtttagaaatacagaaactgatgatcagtt<br>cagagaagttacatcccaagggttacctactctgagttagtcttcaaaacctatactctttcaacataccatactgtctgtcttgggttatttcttttta<br>taatctactttacacatagaaactatagaacaaaaaggataagagtctatcttaagatcataaagctgggcacggtggctcacgcctgtaatcccagcac<br>tttgggaggtcgaggtgggtggataacctgaggtcaggagttcaagaccagcctgaccaacaaggagaaaccctgtgtctact<font color="green"><u>AAAAATACAAAATTAGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>CGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AATACAAAATTAGC</u></font>tgagcatggtggtgcatgtctgtaatcccagttacccgggaggctgagacaggagaactgcttgaacctaggaggcagaggttgca<br>gtgagtcgagatcatgccactgcactccagccttgacaacaagagaaaaccctgtctcaaacaaacaaacaaaaaaaccggtcaggtgcagtggctcatg<br>cctctaatcccagcactttaggaggccaaggcaggcagaccacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctctacaaaa<br>aaacaaaaaaaaattagccgggcgtggtggcaggcacctgtagtcccatctacctgggaggctgaggcaggagaatggcatgaacccgggaggcgga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PCGF6:NM:001011663:6/10	
0	chr10	107881538	107881539	1000348	0	+	12931; RIP_Alu_chr10_107_01	NA	NA	SINE	Alu	Yc1	ctgaattctagagagaagaataaatttactttaaaaagtacctggatcacaaaaaatatgtgagaaataaacagaatttatgaacttgtttagtatggaa<br>ggccatttttcatataataagtgcaataaaaagactaattttccaaaatattccttaggaatttattattttctgggtcttttaaggagggtaaatctgc<br>tttgtgtctgttaaagaattatgaattagtgtatacattatcttctcacgagtcatcagtctgttccacaagtagaatctttgatttggtgttatggatt<br>gagaagctgattggaaccacatagaacactgaagaatcgattggtgaggctgcctctgtggtcaacagagaggacaggggtgctg<font color="green"><u>AAAAACGTGTGCTCC<br></u></font><font color="red">CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCT<br>GTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGG<br>AGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAA</font><font color="green"><u>AAAAACGTGTGCTCC</u></font>aatactt<br>ctttatgcctttattgatcatgaatatgatatctggtgataaagattatgataatggtattgaactgctctcctttcagcaaggaaaagattaattccag<br>attgatttaaaaataatatattcttgcaggaaagcttatctttgacttaaaacacactaaaatttactgtattgctacattttttttcccagataagcct<br>tttgacggaactttctatagagaaatcaacaagttcatttggagaaactttcttaacatagtcacaataatactggtaggtgtcatgtcaataggtaaca<br>attactcatcatttactctattcgtctatgcatgtgcataaacttacttagtctttacagataccatctgaaatgtgt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	115499123	115499422	1000349	0	+	5030; RIP_Alu_chr10_115_01	NA	NA	SINE	Alu	Yc1	aggcttcggagtcaagacagaccagtctgatttctgtgtgtcacttactagctgcatgatccttagctagttatttaatctctctaaatttaaatttcct<br>cttttaaaattaggattaatagattttatcctgcaacaaggtagaattaaatgagatattctatgtaaaacaaaaatccccaataagtagtaggtattgc<br>catgccatataaactgttcggttgtgttttggttaagaggcagcagaactcaagagcatcttcatgacaggaaagcgcaattaacaaagtcatggaataa<br>ctcatctgatatttcagatgaacaggcgattgctttttgtgacaggtaattgataccttgtttacaggtcattggaaacaactttt<font color="green"><u>AAAAACCTATGCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTGCTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAACCTATGCTT</u></font>gtgtttcataggtatgtttgttttgcaagtttagtatttggtgtctgtgccagtttttgtttgcttttcagtttatatttcatggg<br>tttatctacagtacaaatagctttgttaggcttcttcctccaaagagttttgtaatactattggaaaaataatacaaaaaagcctagaatagggtgggtt<br>ggatgggtgggtaggtggagggacagacagatgaacaggttgctgatggaaagcacatctaactgtttcatcggtatcctttccaaaggaacacaagtct<br>tacagtaattttccctcttcccctttttggttaggtctctatattataacaataggctgtctggactttatagttcccaagtaagtggaaatcagcacaa<br>	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	115851722	115852020	1000350	0	+	239100; pAlu10-14115992858; RIP_Alu_chr10_115_02	NA	NA	SINE	Alu	Ya5	gacagcaaaggccagtggctcatcagtgagaacatcatacctctgtcagaggggagaccctgagcagctcccgacacccacacagggctaggaattgacg<br>gtggcttagggtacacgtaagaggaacagcatccaccacaggacagtcccttcctcgcgtaccacccgggatccctgctccctgtcatcgccatactgtg<br>ttctctcagactgtaaggtccttgtcctgtctccctcacatggatcctttccagaccacgggcactctctcaggtcagcaggtccagctgcaatctggaa<br>tcagcatctaccgtgtggaaatgggagaggggacttggttcttaaaccaggggccttggcattagctacctttggtttttctccagaaat<font color="green"><u>AAGAATGATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAATGATT</u></font>agttagataattataaacaatggggggggggggtagttttgtcgtagttagcaaattacattgaatgtaacaaaatcttaaaccataaagc<br>aaaacgtgctgggtttctgcttcctgtggtgacatgacatgaaagcccagctctttttccaggaggacacttctctgtttacaagactgcttgagcaatc<br>ccattatcaactctctccagagaggatacagctgaggcagctcaaattcagaaccttatttttaaagaactaaaaaaaaattagatcctttgataagatc<br>actcaagtatagtccaaactagcctcccaaattttggagtgccagcaattatgttcaatatctccccatctgcctccccccaaaagaaccaattaatat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	118255315	118255622	1000351	0	-	17678; RIP_Alu_chr10_118_01	NA	NA	SINE	Alu	Ya5	ttctggaaggtattgttttctgcttgtttaaaaaataatacacttaggccgggtgtggtggctcacacctgtaatcccagcactttgggaggccgaggca<br>ggtggatcatgaggtcaggagattgagaccatcctggctaacatggtggagccccgtctctactaaaaacacaaaaattagctcggtgtggtagggggcg<br>cctatagtcccagctactcgggaggctaaggcaggagaatggcgtgaatctgggaggcagagcttgcagtgagccaagatcgggccactgcactccagcc<br>tgggcagcagagcaagactctgtctcaaaaattaattaaataaataaataaatacacttaatcaagaggccaccacattttgctt<font color="green"><u>AAAAATGTCATGAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAATGTCATGAGA</u></font>atgtcaaaaacttgacgctactgctggagaaatgtttacacactatagacctgaaggaagatggaaaaagttttgct<br>gttcagttggcttctctcatgctttcagattcatttgagccaaggctgggttttggtttattacacgcttctgtgcctggtacttacgctgctattgtca<br>tctctgatttcccctctcactgaacaactttggagccactgattctttctagtgaattggggatgtaacaaacacaggaaacaaacacaggagtaacaag<br>aaattgtgcaaattaacgagctcaattgaagaataaacccacaaatggtgcgagaagacatcagctgagaaggcttgctactaagtaaaatgcttgctga<br>ggccaaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	123479179	123479484	1000352	0	-	3107; RIP_Alu_chr10_123_03	NA	NA	SINE	Alu	Ya5	gattgcttgagcttgggagatggaggctagggtgagctgtgattgcctcactgcactcaacctgtgtgacagagcgagacctttctcaaaatacacacac<br>acacacacacacacacacacacacacacacacacactcgttgcaatgcctatttccctggttttcctagaggatttttaacatgctatttccacggtcat<br>gtgggtttcacaagctggccctccaagccctctgaacaagctgcctcttcgtgtgatgtgaatttagctgagggagtcactggattcttcatacaccggc<br>attttcctttctggaatgctgcctcctggattgtaagtacaaaaacacaaagtgaacgtgatgcaaacgcaggaaagaaatgtctttttaac<font color="green"><u>AAATCTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAATCTTC</u></font>acaggagacatgctaagataaaagagcagaacactgaaggccccagtgactgaggggcccgacaagcacctcactttcgagcgggt<br>ccaggtagtggccgtcaagacactgcacccctctgcgctccaggatttctgcaacagtgaggcccctcctcaaaaggcagtttggttctcgcaacctcgc<br>gcaatgaggacagggccaggcattacccgctcttagtcctgagccattcactggctttgtgcccttaagaaagttcctactccggtcaggtgtggtggct<br>cacacctgtcatcccaacactttgggaggccgaggcgggtggatcacgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccatctcaac<br>taaaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	128096476	128096776	1000353	0	+	pAlu10-128147416; 15057; RIP_Alu_chr10_128_01	NA	NA	SINE	Alu	Ya5	ttaattcagagatgagcttgggaaggaagagagaggacaatttcaccagcagttgaatgactgctcatcattccaatccagcctctgccctggaggcaga<br>accagatgagagatgtaaatctgtgtatggttcccttgcttctcaaagcatgaccatctcctcatgctgagtaagagtctaatattttaaaggaaatacc<br>tcttgtacatcacatctcccatccatgccaacttcatctggtgctcagtcgatctgtttcagagctggaggaagctgtctgggtgagctgacctgtacag<br>agatatgttagtctgtcatcaagatgacacttaagggactttaaatagtgattctgatatcatcgtattctaattgcacctgacttt<font color="green"><u>AAAAATGATTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAATGATTACT</u></font>aacccccacccacctctggcccctataaaaaggaagtcagtccagagcctgcctgctgcctacctcccagggccctcctgagaata<br>ataagtgtggattgggcatgagttttaaatgcatagggaacatctgttcattagccaggggactttttcccttagaaaataaagtaatggagaaatctca<br>caaaataaaaaaggggccatcaagccctaaaacctagtctcttaacatctttcatgacacagttgtcttgaaaaccaggccttgtgggggagtggggagt<br>aattttctggagttccatgagcatttcaagagctacgcctataggcctaggtcccagaggcccaatatgcccagggcagagagaattcaggatatgactt<br>g	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	129080298	129080299	1000354	0	+	238615; 19840; RIP_Alu_chr10_129_01	NA	NA	SINE	Alu	Ya5	ctctaagatctgcaccatcttgacccacttctacctgggccacttctgaacaactcgggcctctgggcagaagccctgctgctagatccagttcactttg<br>tgtctccttgtaagctctcggtccctctcacctgggtctgtctgagatccctacccactctcctccccaaggccccatgcctgtctccacccttccgctc<br>ctgcagatagatagcagtctggtttctaataaagtggcctctggatcacagcgtgaactgcttcaaagatgcccaaacctcagggattctcccatctcct<br>ctgcaggcgatccaggcctctcacctggcatgaggccccttagagtaggaatcgagcctccagatgtaccctctcatcacccacag<font color="green"><u>AGAAGGCCAGATGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AGAAGGCCAGATGC</u></font>tccccaagcccttgcaccttcccatggtctgccccggcgtggaccggctgcttcttgctgctgtctcgtgtgacggctgccatgac<br>agctgccttcctgccttctgggcatatttcactgctctcaaactttcgtggcttttggagttcaccggcgaatcttgttaaaatccagattttgattcag<br>ctggtctggggtgggcctcgaggctctgcatttctgagaagctcccaggtgatgtcccagctgctccagggaccatccctgagtccccagggcctgtgct<br>gacttaagctcctgagagcagaggcagtggctgtggctgccacctctggatctccctctgagggagctgtgccgtggcctgggctccactccattttttt<br>	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DOCK1:NM:001380:38/52	
0	chr10	133299085	133299398	1000355	0	+	13306; RIP_Alu_chr10_133_01	NA	NA	SINE	Alu	Yb8	tggtctggggtcagagcctgcgactggtccggcacctgatgccactaggtactcatgctcttcaggtctttcctcctctaaaagtagaaaaaagaccaga<br>ctgtatcaaggaaaaaagcataggaagagaggaggagaaatgaactcaatcagtagccggcaaggtgcctggcacactgtaagcacctgctatcagcaag<br>aagcagcaaatctaaaggagagcagtgcgacccccgatgagggcagagcccctctccctgttgtgcagactttgcatgagctataacaaaaagcgcctta<br>catttcggagtgagaggactagagcatgggcctaatctatttttaaaatgaaaacatcattttaatgttgctattttcacaaat<font color="green"><u>AAAACTTGTATTTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTTTCAAAAAAAAAAAA<br>ACAAAAAAAAAAAA</font><font color="green"><u>AAAACTTGTATTTATG</u></font>ggaaaaggtgtgcatgctttctcttttaaagatgaaaaatctctctttctatttgtagaagctgtgcacg<br>ggacgccaccccgccggctcctggaacccgaccgtccagagcgcctcattggactgcgctgagcccagtccacctgcaccactgccgtcctcctcgctcg<br>gccaccgttggttaccatgggaaccatgaccgcagccagcccccgaggcgagaaggcctcttcatcttgccactcgggtcggcctcccatttccatttcc<br>agagagctcgctgtcggctgcggggggctttccatggccctggtcagccctccccactggtggaaaccagtttccatagcaacaagaaggtgggcagagg<br>gcagaaggcagaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	4759112	4759408	1000356	0	+	540; RIP_Alu_chr11_004_01	NA	NA	SINE	Alu	Yb8	tgtaaatttacatatttaattacataactatatatgctatgtaataatactcagcaataaaacttgatgcatgaaataaaatggctgaatttcaaaagta<br>tcatgcaaagcaaaagaagttacatacagagactatatgtttccatttatataaaattctagaaaagattaaagtataggagtttacagctccagccagg<br>ggctgggggtagaaaagagggcttattttatacaggcataagagaatattttgactaatgaaagtgttatctattttgattgtggtgatggttgtacgac<br>tgcataaatctgatgaaactttgaattctgtacacaaaaaagggttaattattgtatgtataattttatctcagcaaacctgcctt<font color="green"><u>AAAAACTGATTGCA<br></u></font><font color="red">GGGAGGCCGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG<br>GCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGC<br>CACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AACTGATTGCA</u></font>taatcaagtattaaactataattttaatattattttaaaaccattctgattatatagtgttgtataaaataccaccctgatgtggtttg<br>tctctgtgtccccacccaaatctcatcttgtagctcccataattcccacctgttgtgggagggacctggtaggaagtgattgaattatgggggcaggtct<br>ttcccatactgttctcatggtagtgaataagtctcccaagagctgatggtttgataaggggaaaccctttttgtttggaactcattctctatttgcctgc<br>tgccttccatgtaagacatgacttgctcttccttgccttccaccatgattgtgaggcttccctagccaaatggaactgtaagtccaattaaacctct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	5063545	5063787	1000357	0	+	238598; RIP_Alu_chr11_005_01	NA	NA	SINE	Alu	Yc1	tcccactgtttaaatggccctgaagtgtaatgctgaagtgctatcaagtttttccaattgcaaggaggccatcttgtgccttatggagaaaataacgttg<br>ctaggtaagcttcatccaaaaatgagttatagtgctgttggttgtgagttcaaagctgatgaacaacaatacagtttcctttgaaaaagaaggaagttta<br>tctagctgtatatgatgtcactttggaaaatgcttcagtagcatttatgatgtgtgataaaggtgtggaaaaatgtgtgttaaataaaatttatgagaag<br>ccattgttctgaagtgagctcctgcactaggtcccaacaaactaaaccaaaatggagtcacttgtgctaggtaccatgtaatcaaacagaaactct<font color="green"><u>AAAG<br></u></font><font color="red">GATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCT<br>GTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGG<br>GCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAG</u></font>aatcacagaaatccccaaccagaccagtttttcctaaaaataagatagtcaca<br>ggaaacaatcagaaaaggcccagtctgtgctggcatgattaataaataccctctgctttaactcttaggaagaaattaaaagtaacttaatattgaccaa<br>ttttcattttgtgttattctgtttccttgttcctgctcaaccctcaacctggtttgcaaaaaacaactgttacaccctatccaatggaactccttttact<br>tcttttcttttctttttttgagatggagtctcactctgtcgcccagcctggagtgcagtggtgtgatctcggttcactgcatactccacctttggagttc<br>aagtgagtctctgcctcagcatcctgactagctgggactacag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	7673492	7673795	1000358	0	+	pAlu11-7675852; 228; RIP_Alu_chr11_007_01	NA	NA	SINE	Alu	Ya5	attgcattttcagacactgcgaacaagaaaagacgtagtgcatgattctccagaactcatcaggccctctcgactcacttggaggggcaatcactacgag<br>ctagcagggtgaactcagggttgagggggagactgccccctgttctctagttggcctgtgcccctctcccatgtggagtcagttgggccttgggagaggg<br>atccctgccactcacctaattcctatggggcctaagcttctacagaaggtggagatagtatgtgattaaaagtaaatggttttaccaggaatgtagtttg<br>gtttaagagctttataggtaagattaaacccagctgcattatctgtggcatcagagacgaatttcagccttagagaattagagccaat<font color="green"><u>AAGAATGGATGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAATGGATGA</u></font>agggaggctttctccacaaaattttcctgcaggatgagaaaaaaggattctttgttcagaatctagaaaatagttcccattcaa<br>tgatttaagaagaactgaatttgccatgatatttcaggattgtccaatccaaagtttctcagtcttgtcacaattgacattttgagccagaaccttcttt<br>gtgttcttgccatcctgcatcttttgtaggatatttggtagcatttctggcctctaccagtgacaattcctgcccttgtgacaactgaaaaatgcttctc<br>attcattgccaaatgtgtcctgagggttgggggtacaaaatcacctccagctgagaaaccacagaaacaccattccatttctgtttcttgtaagtaacct<br>gtct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	exon:CDS:OVCH2:NM_198185:11/15	
0	chr11	9751163	9751475	1000359	0	+	938; RIP_Alu_chr11_009_01	NA	NA	SINE	Alu	Yb8	ctttcttttgcctagtaaacctctgctcttaaactcactccttgtgtgtgtctgtgtccttaattttcttggcatgaggcaatgaacctcgggtattacc<br>ttagacaacaactcctgttcaaagtcaagagcttctaccaaaaagggagaggcttggcctgagagaaaatgcaccagggcagaaaatgtgagccatagaa<br>acagagtgctcaaagggctcaggcgagtattgcacactagttccaagagtcacgaattccttctgatattctttttcaggtcctgcttctggacaccatt<br>tatgtcaccctacataacagagagggtctctaaaagaaaataatatttatttaatagggctgtattagtctgttcttgcattgctat<font color="green"><u>AAAGAAATACCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAGAAATACCTG</u></font>acgtcaggtgtggtggctcatgcctggaatcctagcactttgggaggccaaggtgggaggattgtttgagccca<br>tgagttcaagagcatcttgggcaatatagtaagaccctgtctctataaaaaaattagctgggcatggtggagcacacttgtagtcccagctactcaggag<br>gctgagctgggaggattgcttgagcccaggaggtcaaggttgaagtgagctgtcattgcgccactgcactacagtctgggtgtcatagcaagaccctgtc<br>tcaaaaaaaaaaaaaacaaaactataagaggttgaactggttcatggtttgcaggctgtaaggctgtagaggaagcatagtggcatctgcttctgggaag<br>gcctctggaatct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	14304901	14305202	1000360	0	+	pAlu11-14387378; 239025; RIP_Alu_chr11_014_01	NA	NA	SINE	Alu	Ya5	gatgcctaaattttattttaaataaaaagttatcacacatatcaaactcaactacacaaattgttatactaaaacatttcaggaaatatgtgctttctaa<br>cgctaatgaagttttagaaaagattgtaaatatacaaacataaaataaacaagtatcaccaattctgaaatttgttaaatcagtaaaagaattttaaggg<br>gtaaaagttctatatctttataccagctgacttgacaaaattaagagttccagtaagagcaaaatgttgtcctctatttgggagggggaggggacagggc<br>actgagcaatcaagcagttaaaactcctatgtcgtatcttaaatcacttataacatcaaaaagaaagtaaacatttcaatcctatt<font color="green"><u>AAGAATATGATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGCAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAATATGATTTT</u></font>gctattctgttctgctgtggaaaactaagtagtcacttgtttaaaaactaagatgaagcagacatagcataaaccaattaaaat<br>taaatcaaaacaacagttttaagatgcaatatgcatacatgaatttcttaacagattattatagttaaaataccactgagtgtactcacttcaagtggtg<br>tgtaaaaataaaaatagctgaagagaggatggtcaaacctcaaaacaagtactataaccaccacccaaaaatgcaaaataaaggaagttgtcttcttcag<br>agttaagaggaggggaaaaaatctttctacttacacattgggaggaagtggggatggagagaaagaaaaacaattccatgcccttcctaaatgtttaaga<br>ac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RRAS2:NM:001102669:1/6	
0	chr11	16554155	16554462	1000361	0	+	pAlu11-16636632; 5611; RIP_Alu_chr11_016_02	NA	NA	SINE	Alu	Ya5	gattccatttatataatgcataaaaacgggcaaaatcgaactatattgtttagagatgcattcataggcagtaaaactataaagtaaagaaagtgactaa<br>cattaaacacagaatggtgatggggtaacactaaataccaacagggagtatgggggtgtaattgggaaggaaaacaagtggcttctgggaaaataacagt<br>gatttcattttttttacctcaatgttggttggttacataggattcacataactattagttacacatatatacatccatattttaaataccttatatgttt<br>acatttcaatttcaaaaaataaaacacaaatctacctcagagttactgtgaatgtaagtgaaataatgtatatggaaaggtcttt<font color="green"><u>GAAAACCACAACTAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>GAAAACCACAACTAC</u></font>acacacactcagttttaaaagttaaagactggaaacacactcactcatagaccaaataagcaatagcccacatgata<br>taaaatcccactacctcaaaaacacatgttgtcatagtaataagatatatcttctgtaatatcataaaataatgttgtcattgtaataagatatatcttc<br>tgtaatatcataaaatgatgtttaacattattcttttagagattcattcctttggattaaaacattatcctttttttaacatgccttctgagaaaatata<br>ctaagctgagaaataaagttataagggattttaaaggaactataatatgaagacttggagtttttcagatttagaataaatatagttcacgtctccttac<br>aacactcc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	32243230	32243549	1000362	0	+	pAlu11-32325708; 238353; RIP_Alu_chr11_032_01	NA	NA	SINE	Alu	Ye5	aggctgctgttgttatttaggtaagagatgatggtggcctggtcaggatactataaatagaaatgataggtatgactggataggaatggcgagaaaggtg<br>aagagagggaaagatgaagggagggtgagagggaaataacttctacttggatgacttccatgtgtttggattaacaacgtggtgagcagtgcacttcaac<br>ttgacccatctttctttcagagaacagctttccagttgccttgagaataagtctgcagaacctaattcctacttcttttcatcttgccagccatggacga<br>aatccttcattaattaggaaatcagacaaaaaacaaactaaaatgttcccagaaagaggtgtcaggaagtagaatatgtatggaatt<font color="green"><u>AAGAAAAGGTCTT<br></u></font><font color="red">CGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTTCTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAAGGTCTT</u></font>tattgatcatctgttccagccatgttaatagataagaaaaatgtgactcagattaaggagccatgac<br>caaaaataaacagccagtcaatggcagaaccaaggctagaatccattcttctgattgaacaaatatgaatgaagcagcataataaatgggtaaaataatt<br>acatgtacataatagctatatatttgtatttttatgtcctctctcctccaatcattggggaaagagttgtggcatttgaatgcaaattgaagggtacaat<br>ttagcactgatttttgaagacagcttgctacacatgctatgggacactaaactgtaaaacactaaatgttacttaaggaaaggaaggaaggaatttttaa<br>cttcaaattatgttgttgaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	37918639	37918941	1000363	0	+	238373; RIP_Alu_chr11_037_01	NA	NA	SINE	Alu	Yg6	caggagtaaaatatgcaaataaactggaaacattatcatgctaagaaatagattcttatttagccttgctgcctctggaggagctgtatgattatatgtt<br>acatgataagttagtttaaaataataacaggcaattaaaaaaacttttaatatttttggagctattcaatcaccaacatttatttgtggattctcctgtg<br>aagacagacttgccctttttagtgctctgtgggaagaaaccgaaaagaaaaaaaagacaaagtagctctcagtctacaggaactgcagtctaactggata<br>acaaatctatgcattgaaatgcattcagtgcccttacaaataaggacaaaggctgaagcaaattaagacaatggggatggaata<font color="green"><u>AAGAAAATGCTTATTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACGGAAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGAAAATGCTTATTA</u></font>tattagaaacagaccaactgttgagtaagaacaggttagtttgggtgagattaaggacaagattaatgataaatttagcta<br>tcaaactcatttgcttctttctgtatttttgacctagactcattaaacaataaaataatgaattgctttttatttcaatacatagctcatagaaaacttt<br>agattctagctgattcagttacattattgaatatcaattcttataaaaatgaatagatgatgacaaggtttctttaaagggtgtttatttatttattctg<br>ttatagattcagggggtacaagtgtagatttgttacatggatataatgcataatggtgaagtttgggcttctgctgtactgatcactcaaatagcgaaca<br>ttg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	42420683	42420985	1000364	0	-	3303; RIP_Alu_chr11_042_01	GGATCACTGATGCTTCAAATCAAG	CTGAACCAAAGAACATGGATCTG	SINE	Alu	Yb9	gtggaatcttagttatgaatctcctgaggcttttcagtgatctgttggctactattactctaatcacctctatcttctgtaagagtcagaattacccatt<br>tcctgaaagaatccccacatatctgaaccaaagaacatggatctggcgatagaaataagtaaaaaatcttttgtagaacaactcatgcgtctatttctta<br>ggactcactctgttttcaacccctcccacccgaggggagatggtctgtccatattatcatttagcacttacagagaaattttatgattgagctgagacat<br>ttctcaatatggggaattgtgtagttaacattttcatagtgatttgccattaataaaagcatacttcctgttttaattgacaacatttattt<font color="green"><u>GAGAAACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTTCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAA</font><font color="green"><u>GAGAAACC</u></font>atagaagttgtgatggtttggatcctagcctctccccaaagtcaactagactttttactttctactacaaatatatcttttctttctcc<br>tattgtttctcctcttctttccccacactgtccacttagaatatagtagccattgacaacttaatattgaaataataacctaatgggaacaagaaagagg<br>ggcttgatttgaagcatcagtgatccttactataaatgggtaactgggttacatggctgaaagagtgattaccttgtgcatcaatcacttattggattat<br>taggccaacataaaacatatagaaaaaattatgatcagttcagttcagttaaacagacaaaaactgagcgtttactgtggatcaaggatgccacaatgct<br>aaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr11	43419242	43419243	1000365	0	+	18402; RIP_Alu_chr11_043_01	NA	NA	SINE	Alu	Yb8	tattatggccctcatcctgttattcttctgtttaagaaacaagaggctccctttacaacaaatcctcttcgtgactttcccacacatttgtaacatcacc<br>taccttttcctcagtatcttatttgttactatcccctgtatacattctttattctaattaatttgaaattggtaatgccctcacatgtgcctttactatc<br>cctgtatgtatgtgtgtagacaaatgagtctatgcatacatgctttaaaaaaaaaaaattgttaactctggaaggctggatgcagtagctcacacctgaa<br>tccaagcacttagagagcctgaggtgggcggatcacctgagaccaggagttcaagaccagcctggccaacatagcaaaaccc<font color="green"><u>AAAAAAAGTAGCCAGGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCTGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>A<br>AAAAAAGTAGCCAGGTG</u></font>ggtggcctgcgcctataatcccagctacctgggaggctgaggcaggagaatcacttgatcccaggaggcagaggtttaagtga<br>gctgagatcacaccactgcattgcgctccagcctgggcaacagaacaagactctatctcaaaaaaaaaaaaaaagtccctatggggagtgacctccctga<br>ccctctactcttatctgtttaaatcctgtctcaggtagtccgcctttctctaagaagcattttgtgattacatgcaaatattttttccctctaaaaaaaa<br>attaatttttctcttattatttcatgtatgtagttgtctgtctccaacttgattataaattcattatatttcatttcttaaggttagaaactttccatt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TTC17:NM:018259:16/24	
0	chr11	43848421	43848741	1000366	0	+	9989; pAlu11-43930898; RIP_Alu_chr11_043_02	NA	NA	SINE	Alu	Yb8	agctgagatctgaaccaagtctcgtttgacatcatagttcatagactcaaaatgatgccattcccatggttctgaggactcagtagctctacagaggaat<br>ctgctaagccatctagataaaaccatcaagaatgcttaataactcaggggctgctggattacactgctaccaactcttcttttttgaagtcactgaaaga<br>caccagcaatgaggtcccaagaaatggttcatgtcattttaggaacagtcctatctttcctaatttggctttcattctggcatgtatttgcagagaggtg<br>gcacggtggcatcatgtggcattgtggttcagtcttctttgtaaaatgggtctaataataataatgcctgtgtaactgggttctt<font color="green"><u>AAAATTAGATCAGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTAGATCAGTG</u></font>taggcatgtaagtgattggaacagcacttggcatgtaagaagtgctcatgaaatgttaactaat<br>gttattatttgctattatttagaaataagaatgtgtaaatgttgcctactccttttagggataatgtaactatcagaatatcttcaagctgtctgaatgc<br>tacataatttaaaaccttgacataattccctatactccatagtgactttgctaatgactataacctctagtgatctcttgttccccaaatttttgtctgc<br>cctccataatttcacatccaattacactgttttttaattgtatctcacacagtttaccctgtggttcactggatggagattttacctcctgcagcatcta<br>caatcgtgctgggcattgaac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	49381674	49381992	1000367	0	+	pAlu11-49456606; Yb8AC1565; 54444; RIP_Alu_chr11_049_01	TTAATTTGGTTGGAGGCTGG	TCCCCACTGTAAAGCAAAGC	SINE	Alu	Yb8	agagctcaaatttttcagccaatttatttttaaatgcatttataaactatcagaatgctatgctgcagaccttttagtagttatagaatcttgtgactga<br>aaggtacctcataaaaacctgtgtgtcttaactaccttcccagagatgtagggctcagatgccagacccagagaggtttctaggagcctggattgagtag<br>gtctgcctttaatatgccaccaagggacagagaaagtatggtgttcaaagatgacactggaaacaaaagtagtcaaactgagatactatttgaaaatcct<br>aagcagacaagcacaactaggtataaggaaactgaagagactgggaagacctggacaaagtaaattaatttggttggaggctgg<font color="green"><u>AAGAAATAATGGTGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATAATGGTGAA</u></font>aacccctgaaataatgtggaagagtaatagatacttttaatagagcatggttagctttgctttac<br>agtggggagagttggtaagaaccctgagccaatttaaataaatataatatagacagactgcttaaattttctctatagattccaaatcaaattagccacc<br>caatccagtatgtgaagacttcctgtggttaccacttattattgtccaaaggtgtccattttgattttgtaactcggagtattaaacaatgtttcccctt<br>attgaactaaaatgggcccactataacttcttcctactggtcctagtcttttatgctatgcatagccataatacaaatgcaatatcaattgtactttttt<br>tggaaatcaatagggcccc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	443	110	NA	intergenic
0	chr11	61646898	61646970	1000368	0	-	12975; RIP_Alu_chr11_061_01	NA	NA	SINE	Alu	Ya5/8	agtgtaactgtaaccccacttcctgaaatctcaggagtaatgttaaaaatccaaacccatcaaaggccagggtgttacggtatttggctcatgaatcgaa<br>aagcctaatcatttcaatttaatctttacaagtagaacaagatccaaacatgggacgttttcttatttttctttgcttttgtggttgtaatgcccttttg<br>gttttctgagcaagctgaatacatctgataaatactaccattggacaaaggatctaaacattgagatgttttactaaatcaaggtttcaagttggcacaa<br>tgtttttactaagtcatatttcaattagttcatctttccaatatggaggcggggggggaaagacaaggactaatatgtcctat<font color="green"><u>AAAGAATCTCTGGCCGG<br></u></font><font color="red">CGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAATCTCTGGCCGG</u></font>gcgcggtggc<br>tcacgcctgcaatcctagcactttgggaggccgaggcgggtggattgcctgagctcaggagttcgagaccagcctgggcaacacagtggaaccctgtctc<br>tactaaaatacaaaaaaaaattagccgggcgtggtggcttgcacctgtaatcccagcgactcgggaggctgagacaggagaatcgcttgaacccgggagg<br>cagaggttgcagtgggccgagatcgcgccattgcactccagcctgggccacaaaaagcaaaaaactccgtctcaaaaaaaaaatctctgccgcttttgag<br>aagtaaaaacaaaacgccttgtgaatggcaacggagtgtgcgtttatctagagccttctgtcatctcttgggc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	81233832	81234186	1000369	0	-	3136; RIP_Alu_chr11_081_01	NA	NA	SINE	Alu	Ya5	attattttataatatatttacatttacaagcattcttaaatgtagatgaaagtggagaataaatgcatggacaaaaattatcagtcgttggtgtgtatgt<br>acatacttcagtcttattgatttgactaataatgtttggtcccttaacatattcaaatcagctaagtgtagagtcccagctacagatatagattgaatat<br>gtattcaattaaaaatcccagtaatattcaatggcatctcatttttttcagttagtactgatggcagatagacaaaaagtttattgcaagtttaatgtac<br>atgaaaaagcggtttgaattacagtggcttactgtcaaagtgtgtcattagccaatgtaaaaccatatctagcataggtagatc<font color="green"><u>AAAAATATATGAACCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATAT</font><font color="green"><u>AAAAATATATGAACCT</u></font>gtagtaaacatgacatttccataatcatc<br>attggcatagtagccaattaagctaattttctttgcatctaatctaaccagtatgccgtaaatgttttacagagaaggaaatgttttaaatttcccattc<br>tctgaatctatttctgtgaattagcaagaatccctcacttctataggtaataccaagctagaggcacacaaattatttttagcatcttggccccatgcac<br>tattcatctccaaatagtttaatagcttttataagtttgtcatatcatttactaccaagggtgaagcagaatacatccttaaaacagaactgtttccata<br>aaactctgtataccagcatttcagaaaaactctgggccacaactctttttcaagt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	91885655	91885949	1000370	0	+	14987; RIP_Alu_chr11_091_01	NA	NA	SINE	Alu	Yc1	aaaggttaaagcaaaggggactttcttatcatgctagctaaaactgccctgttttatatctcaaaaaaaaatatatataaatatatataaattatatttt<br>aaatttatatatataaatatatataaattatattttaaatttttatatattaaatatgttttaatgtataatattaaaatatatatatttaaaatatata<br>tatatcttgatttcttggaaggtcagataaacaacttagtgttggcttggtggcatggaacttaacatgagtgactccattttggtttgatcttttgggc<br>ctggtgcaggaactcagtccaaaccagtgactttctgcaaattgtatttaacacactaaaatgtatttgaagcattataaacatctaagtt<font color="green"><u>AAGATTATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAGAT<br>TATC</u></font>tccacccacaatttctctactaatctctgttcatgccatttcaatttgtttcagctgtgtccatatatttcagactgacagcaattacagatatga<br>ctataggagtgagtggagtgaccctggttgggcctatgaggataaaatgcccattcttccttaactgttaccacacactgtgctgaacaatgatttctgt<br>gaaggcattaagaatcttatacaggtccaaggatgaatagaacaagaaagaaaaatagtatctgtatgatcttgctagaggcaggcatggggttggctaa<br>aagtggttatggagcccatgaaagaatttcatgtgctctcagaaataaatctagtttaaagagtttgactcttgaagaaataagcaatttaaaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:FAT3:NM:001008781:1/25	
0	chr11	92248127	92248128	1000371	0	+	15668; pAlu11-92793021; RIP_Alu_chr11_092_02	NA	NA	SINE	Alu	Yc1	tttttccttcataggatcactgtgatccttcagagaatgaaagtgatttaaaaacactaaagcattagattacttagtatcattatggctactaatgaat<br>gataataatcattattgatatttttgaaagtattaataatagggctaataccaggataatgagattataaataatattttgtgagaacaggttaattttc<br>ataaacaagccttttcacagaggctgaacaatagatatcactcttctttcactaaaaaaaaaatctgaccacttttaaaaaattccaattgcttttccct<br>ctcattgtgttaacataaaactcctccgaatttaaagttctaaaagcaagacttcttccaaaaggctctgcctcctatgccccaag<font color="green"><u>AAGATCCTAGACAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGATCCTAGACAG</u></font>ttgctgctctttctgataaacagaatgggtaatgaagtgtggttgttagaaatacagttcaggactgcaggagccagacttcctggg<br>ttcaaatccacacccactttgtgaccatgacaaagcaatcagcttctctgtacctcagctgcctcttctatagcgtgcttctaaatggagtttttctgtc<br>tttgtatccccagtgcttgccacagtccctattccaggggtgtgctggtaaaccagttctctaaaaataaaagccctgatttgtagcatttgctgatgac<br>tgcagtgtaagtacttccaccatggctgatgtcaggctacccgtggtttaacaactgacctgccaaattcctgaatatttaacagttacctcttgggac	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FAT3:NM:001008781:21/25	
0	chr11	96119984	96120296	1000372	0	-	13787; pAlu11-96648755; RIP_Alu_chr11_096_02	NA	NA	SINE	Alu	Ya4	gaggctatccttactaagactgaagatcacagaaagatagtattagaaaaaaatggatacataaaatattccttggtagtgagtgttccttccataaaaa<br>ataataactttatggttgttttaaacagtagttgcaattggtatctttgctttcagaaatgtctaataggaaaaataaccccacagaatttggaaagatg<br>gaacaatatcttggtaacgaagtagaagttagaataagagagatgatgtgttttgtaataagaatcacaaagagacatggtatcctcatccaattgtcct<br>aatacttactaagcattgttggtgatttgagaaaaactgaaaatttggaaaaattatattcagattcaacttatttggaatcaatt<font color="green"><u>AAAGTGAATAATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACACGG<br>TGAAAACTTATCTCTATTAAAAAAAAAAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGA<br>GAATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAGTGAATAATTC</u></font>tgggcacccacgaagaatcagacgaagttaaatagcataagtatgtgcatattcgttaagaaaaataaaaatt<br>ttcaaaagatatatagactaagaaattttgactaaaagaaagataacagcagaagttgaagaatttctaggcacagaaagtcaagagtacaggagactca<br>gtggtacttattagcaagcacattatgaaaatggcttacaaagtggagagagactgttgagtccagaaggagcgataaattaaaacaatagccaaaaagt<br>gctgtgagtgtagaacatcgctattcatttgtagtgagtaagtagtagaagtaagaggcatagaagtggtcataaaaagcatgataatagagcttaaagg<br>ttgagtgattcta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	102593155	102593300	1000373	0	-	pAlu11-103121915; 6899; RIP_Alu_chr11_102_01	NA	NA	SINE	Alu	Yb8	tatttcaaagagcagaagttttcattttgatgaaattcaatttatcaattttctttttctattttgatatcacatcaaacaagtctttgcctcaccaagg<br>tcataaagatgttctcctgtgttttcttctaagttttataatttcatgttctacactaagatccatcatccacactgtgtaaatttttgtgtaagttaaa<br>aggtaaaggttctgggctttttctctctctacctggatatctaaatatccagcaccatttttcaaaaagactatctttccccatttatttggcatttttg<br>tgtaaaatcaaccgaccacattccagtgatctctatgcctaatattacagtaatatcagattgccttatgattactgaaaagtgactctt<font color="green"><u>GAAATCCTAA<br></u></font><font color="red">GTCCCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAG<br>TCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>GAAATCCTAA</u></font>ctcccataactttgttgatttttcatgccacttactttttaatt<br>gagatatatacattagtctgatgaatattaaagttaattttcataaaagaggcattagattagtgcctagttgacaaggtaacagttaccaagagggaga<br>tggggaaacatatttgaggcatagtcagggaaataaaattgacagaatttaatgactcattacattaagggataaggtaacaaaagtctcagtataatat<br>aatttataagttctgtcttaaataattagtgtatattatagtaccataatctgaggaaagaaatacaggaaagaaaactcataagttcagttttgaacct<br>gtttcaaattgtaatgcccgagagacttccaagaagacatgtttaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DYNC2H1:NM:001080463:55/90	
0	chr11	102916042	102916344	1000374	0	-	Yd6JX456; 20874; pAlu11-103444811; RIP_Alu_chr11_102_02	AAATGCTCAATGAAGGCTGTAAG	AGTATCATCAACCCCTCAAACAA	SINE	Alu	Yd8	acagctctgtcaaattgacacataaaattaaccatcccagctagccttcccatttgataagtgacttctggtaactaagctcttcagtctagtcaatgcc<br>atggctgcaattcttccattgcaagccctctgtaaatctgatttgtgattagaattggtgtagcaaactgtcagcatcaatattgtaattaggaagagct<br>aagagcccaggacttagagacatgcaaaagtctatggcaatggagagacaagcagaagagggagtccaggaccccagaaaaagaggaaattattgcagta<br>tcatcaacccctcaaacaagccaaattacacaaagggaagataatcttttcaagttctatagccacaattacattgacagagac<font color="green"><u>AAGATTAAGAATTACA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCT<br>CTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGGC<br>GGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGATTAAGAATTACA</u></font>tgtagtatagaaatatactggtgaagatccaaacacaagaaacttggcatcctcttacagccttcattgagcatttgctta<br>atgtaaaaattatattgttgctttaaggagatttgtaagttactcacacaccatcattttatttctcaaggaatttcttttctccaattcaacaggacca<br>atagcactggtatgcctatatcagttgttaaatgatctgaatatcatgtttggcatgtggaaaaacactagtggggacattatctattcatttataatgt<br>gtcatgcaaataatgccccataccaaccacaccgagaggttgtgacttttatactcccttttaaagaggaaggtatgcaatgattctcatttttgttata<br>tta	UCSC	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID:15008405</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	499	186	NA	intergenic
0	chr11	103515694	103516036	1000375	0	+	14867; RIP_Alu_chr11_103_01	NA	NA	SINE	Alu	Yb8	aaacagctgaaaagtaaaatgagtaaagataacagacagttaatgggaaaagctgagcactaactgccccagtacaaattaactatctgataaacggtga<br>aagaacaggcttacatggatccaaactgaactagaaataggcttctgggacaacaatccgatcacaaacactaaagactaaagactaacacaaaagttac<br>gtgtagtagctactgctttcaagtagatgcagggtaacccagtgattttttactttaaacaacaaagactttactcacaacatcattggaatcaactgca<br>tatttccctgattcataaagaaaactcttccctagaaaccagcattaacactgcagacagtgacaacaccttgggttcttgtcatgtctt<font color="green"><u>AATAAATAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGG<br>AGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGA<br>GACTCCGTCTCAAAAAAAAAAAAATAAATAAATAAATAAATAA</font><font color="green"><u>AATAAATAAC</u></font>tgaacgagaaaaaccaaaggaaataccagtatagagaactattcagg<br>caagtgtgcaaattaaatcctaattaaaccatttgaatatcagaacaaatatagcacaaaattataatgccaattagcattttgttgatcagtcattacc<br>ataaaacaaagagcaaatataaccatgttgctttaataaggtcctaattaaagaaaaattactttagcacaaaatgcaaagaaacagcagattcacacat<br>aaacattccagcagagacaagttaaagagattgagctcacatgcaattacttagtgcatgaaaaacccgtaaatccaacaatcctctgtggccatcaaca<br>atcctctgttaaaacatgttcaaaaggtgcactcttttaaaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PDGFD:NM:033135:1/7	
0	chr11	105270732	105271034	1000376	0	-	1140; RIP_Alu_chr11_105_01	NA	NA	SINE	Alu	Yb8	tatctgtcttttatctatcttccatctatatatctacccatttatcacctttgttttatacctggctcccttttattgccactattttaggtaccttata<br>aaaatccacactcaataaaaagtgtaaaacagataatagcaagaagagagcaaaaagcctattaaggaagtgaattaataaagccataggtattagctca<br>gagaaaagtaaatcacatacacacacacacacacacacacacacacgcatgagctcgtagcttttgtaattgctttctttttgttttctcttagtattta<br>gtaaaggttcttttgcaaatgtgaatatgcttcaatttgctgagggaatgaaggagagtgttttgtttattttttggtgggaat<font color="green"><u>AAAATATGTAGCAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAATATGTAGCAATA</u></font>atcctgcagttagagtaagaagtaatgaggacttggagttgcttgtccttctgaatgcaccttggctatggttttgggatc<br>ttcagattatttgtttctttccttccctcttccctccctcctcctcctcctcctttttcttttatagtgaagtagattgtcttcctaaccaacatatgtg<br>cattgctgtttggctatctacgaaaaaatatatcagtctactggcaactgagcaaaaattgctgtcaagaggcccaggtatacgagctaacagctattat<br>atgctgagcttattatatgccaggcattgtgctaagcgtattacacagattattgatctagtttagttttcataacaaggttatgagatagatcctatta<br>ttg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:GRIA4:NM:001112812:5/10	
0	chr11	106101091	106101374	1000377	0	-	pAlu11-106629868; 6518; RIP_Alu_chr11_106_01	NA	NA	SINE	Alu	Ya5	ctgtcattttagtagtcactggagagtcaagcatttaattaaacatgcaaatgcctgtcactgactacttttaagctcataatttaccatttcaaacatt<br>tggctcaaagtactctgaaatattactaacctccatcaatgggaacaaatactttattaatattgtgataaaaagtaattacatattaaaatattaccat<br>atactatacatgatactctaccatggcttcatttttgttttgataataactttacgtgattaaattaacttttaaaaatatatttttaaattgaactatt<br>tggtataattctgataattttagaatatgtatactctcctaaatatacaccatgaaaataaatatcacagttagaattttagccaat<font color="green"><u>AAGAATTTATGTC<br></u></font><font color="red">GCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCCTCCAGTGAGCCGAG<br>ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTTATGTC</u></font>aat<br>aagaagatacatagaaatatcataaatatctgagttgttctctaccaaaataaaggatttcttaaataattcagtctgcaatcctaattatttctgcaca<br>gtgtaattaaatttctattgtgaaaattaatattcttaaaaagtaataacatcaattgttgcaggcttctttttaataaacatctacataaggtgtctgt<br>atacttggagatatgcttatctgagtaggagaataagatttggtggtaaagctaatctagtaaatgaaatcaaatgagataatagatgcgaagggcttga<br>cacagagtgttgcacactctaagtgctcagtaaaatgccagagatgatgaggatagtgatgctcacatctgtattgtcaggtta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GUCY1A2:NM:000855:6/8	
0	chr11	124335362	124335456	1000378	0	+	18844; RIP_Alu_chr11_124_01	NA	NA	SINE	Alu	Ye5	acacttaacttccaaaaggacaagtgtttttccaaacaatttgaatgttgctattggaagttctaggttacctccttccctgatgcctggggatggaata<br>gaggatgaagagaatcagaacgaattattccaacaacaagcccaggctgtaagtacctgttctttttattttatgtctatgatattttccctatccccta<br>aactataaatatgacatctagggtatgaggtagggattaagagttatcacactcagcttcacttttgataatcatccccctttttttttttttttagctt<br>tgtaaagtggggaatagtgggataatgctttttaaaaattttaaatttaaattcatttgtgtttggtaagatactctaaaattatct<font color="green"><u>AAAGAAAAGTGCC<br></u></font><font color="red">GCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGA<br>AAAGTGCC</u></font>aaagtgctagaattcaaaacctattagaaagcactttaggtcaagaacatggattttccaagttatattgaaattatattctaggcaagcta<br>ctattagtttgtaatttacagagagaaataattcttaccttcgttgcaaagaagttcagtatacataggtggcatttcatttattatttatctttgtctc<br>atttttcttatttttgttttttaatctgattatcacaataaatgaatctatagttgtaggttaaagaataatacatagtaaattcgtaacatatccagag<br>tttttggaaaaatgtaatttttatttaatgactcattttatatacctaatatttaaaaattaaccactgtgagtagatttcatccattcacattg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CCDC15:NM:025004:4/16	
0	chr11	132063805	132064084	1000379	0	+	15278; RIP_Alu_chr11_132_01	NA	NA	SINE	Alu	Yb8	atcactcatgctctttgaaccggcagtaaatgacaaacatgaggagaaacaagagcactaaactggtacccgtaatctagtcctgaccgacactagcttg<br>agacattgagtgtgaccttgggaaatcaaagagctttcctgggcctcagttatccaatctgaaatccaggatattggatgtggtggttgccaagacctct<br>ccaattaaaggctgtaatttagaaattgtcttttttaacctttttcaaggaatgatagtatattcaatgcagcctggaaataatgatggtatcactgttt<br>ttgatggaattggtactggataaccttacattaagtagaaccaggctgcattttcagcaagagagcatattatctaatagatacaaaata<font color="green"><u>AAAAATAGAT<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAAAAAAAAATACAAAAA<br>ATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCG<br>AGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATAGAT</u></font>aagctccttt<br>ttgtgtatttgagaaacaaattgttagtaaaatgagctgactgtgctctttgagcccctgagctgcctgccctgaggattacgtgtgacatgtaacaaat<br>cccgggaatgctgtttcagtctgtgaggcagggctccataattatttttaatacatttctaggcttgttttcagaatatacaaagaaaacattcaataat<br>gtcatctaaattgtgaagggcaattagattgttacattgggattttcactggattatgtggtgaggtttcctcacttggaataaggccctcctttgtttt<br>ctcattgatttaaaatgacaagtttataaagagcaaaaatgtttggatgactgacagttcaaattttgtggtaaagagta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:OPCML:NM:002545:1/7	
0	chr12	5639864	5639865	1000380	0	+	3372; RIP_Alu_chr12_005_01	NA	NA	SINE	Alu	Yd8	aagctatcagcaacctccattagtactgcagaaggtccctgacttaatgatggttcgacttacaatttttcgactttacaacaggtttatcaggccatta<br>aatgcattttctacttttaatatttctgacttatgacaggtttatccaccataaccccactgtaagtcaaggagcatcctgagatatgaatccttgatat<br>acagccttttctataccatcatacgaacatcttaagccaaatgactatgaactttgaatacatctaaaccctgtgctgtggcctccaatgcttaccatga<br>tccgggctttgactcctctccaactttatctcttgccatgcaatcttttgtatactccatctcagccacactggcttccttcctgttctt<font color="green"><u>AGAACACGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG<br>CGGAGCTTGCAGTGAGCGGAGATCGCACCACAGCACTCCTGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAACACGCC</u></font>cc<br>atagcaaaaccttagcatgactcctctcctcactctccacccagctcctccctcagctcagccttcaattctcgattccagcatcactcccacaatgaga<br>actttcccacgccccttgtccatccctggtccatgttattctctaccacagcacttattgctatccaaagtgatcttgtttatttattcatctcctaact<br>ggctttttaaggaaaacatcagctccataaaagcaaggaacttcaaatctcattcaacatggatccagcacttgggtcacgctgatcacagaattcattt<br>gcatggatgactcagagagtggatatcagtttggaaacaatagccgggctcattttggtggtgctccatgctcataatattgggaatg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ANO2:NM:020373:15/26	
0	chr12	10125471	10125472	1000381	0	+	19912;1104685702828; RIP_Alu_chr12_010_02	NA;NA	NA;NA	SINE	Alu	Yc1	acatggggacagagtgaccaggacacacttacctccagctttgttatacagctcacgacagagtttttcagccacatgctgcagacttcctgcaagcttt<br>atattctggacttgaagagattgcaactcttgggacgtatttcctaatctttcttccatttgagaaatggtgtcttgaccagtattggagagctggtagt<br>actgaaaaactaacccaaatgaccaagtcagactggacagcttatttctatgttttatttccattttctgcttatggggaagacaaaacagtatattttt<br>tagtatctcaggctctgagttctcatattgcctatattcaagtttggactctagtacatatatgagaagttgtatcaccttgggca<font color="green"><u>AAAGAAATTAATTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAGAAATTAATTT</u></font>tgtgaagtcatgaggagaaaatgacggctaagagggctaagatagagctcccatttggacaacagaacagggtgaggagac<br>tcacactgtgaacttttcctccaggaaccacctcaggaacataccaggaaaattgaaagaatgcacagatcctttgaaagaagcaactcaatactgaaaa<br>ttctggaagacagccaaaaatgtgtgaagtggggaaaacccacctctgaacacacatccctaatggggaacctgaaaatctgggttacatgagaaggatt<br>taacctcacctggagcagaaatggatgtagggagccaaatataaaatagatgcaaaatataaaagtagaagaagcagaggaaagagtcctgtaggcactc<br>ccatt	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:CLEC1A:NM:016511:2/6	
0	chr12	40768967	40768968	1000382	0	+	21995; RIP_Alu_chr12_040_01	NA	NA	SINE	Alu	Yb8	cagactagcacaggaaaaagtctaaaaagtaaaacagaaaataaatctgttgagtgttgtctgacctgtttgtcccaagatatatttttggctagagtcc<br>ttcttttactataaaatatactaatatcgagaaataaattttggaaaaggctgtggtagtaaagtggaaataataagtaatctttgtattttcaaccagg<br>tattttgtgatttagtattttcaactaggtgtattttcaattagaaagatggatggggcttaaaagtagaacattttatatggaagttgaagttggtgaa<br>aaatgcaaaatcacaaaggaaattcagaaccagaaatctcccaggttatccctgaggttcactagcacgctgagggagaggaaatga<font color="green"><u>AAAGAACCACCCC<br></u></font><font color="red">GCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAACCACCCC</u></font>agtctgcaggaa<br>gctgcagtcaatctacagagaagaggatgaacttggatgtttgtttaaaacatgggttttgtcactgtagagatgcaaagagatcctaaactttggcatc<br>ttttgagcaagaaaaactgtaagcattaactgcataaaaccatcacccttggagtgatttttaaaaatcaatcacacatactcaagataaacgtctaaaa<br>ttgttttgaagataaaagttttaaaaagagatggggaaacttagccaggaacaatgtaataaaaataacaatagcacacagagtgcttgctacctacatg<br>ccaggcaccattctaagagttgtatatgactgcatgttctcattcataggtgagaactgaacaatgagaacacat	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:GLT8D3:NM:173601:7/8	
0	chr12	43705813	43705814	1000383	0	+	20014; 238919; pAlu12-45136302; RIP_Alu_chr12_043_01	NA	NA	SINE	Alu	Ya5	tccccagagcctacacaaagaacacacccctgcttgattttagccctatgagacccatttcagggtctgacctctataactataaaataataagtacctg<br>ttgctttaagacactcagttcatggtaatttgttacagcaacaatagaaaactaatacactgggtatcaggctcactgagccaattgctgaagaaaccag<br>acaaagagcacatagttcccaccctaaaggagctcaccttcttatgggaggggtgatccatgaacattcactctgtaacatagcaccaggaaggcagcta<br>ctatgtaacatagcaccagaaaggcagctactatgcattctggtgcttaataattatttactgaataaacaagtaaatgaatgtcataa<font color="green"><u>AGAAAGATCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGATCTG</u></font>aaagtgcactggcatcacaaaggaggaaatgatgagttcggagaaaacagtcaggttgagtcaagtataa<br>aagaacaataccgtttaagagagaaagaaccaaagccaattcaaacagttactagtatgtctgaaagcccaaggaataaagtctatccaaggaaaagtaa<br>gcagtcatcaaggctggggaaaggcataaagcagaggctgcatgagggcaaccatatccagcctgcaaatgggctttttttggtcttagcatgttggtta<br>agaattctgatttagttgtccacatttaaaaagcgggaagtttcacataaagtccagatttctgacacctcttcaaaggtaaccacactgggctcagagt<br>gagtagcaggtgcctcttt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DBX2:NM:001004329:2/4	
0	chr12	45361634	45361965	1000384	0	+	pAlu12-46792013; 18789; RIP_Alu_chr12_045_01	CCTATTCAGTTCCATCTTCCTTCTGC	GAGACTCCATCTTGAGCTGTTCCAG	SINE	Alu	Yf1	accctaatatagctagccaatttcattgccttgtatctattattttctacacactttccaaagaatcaaatgcctgaatcattgcactagtaaaagcttt<br>accccaaagtcataaacagtaaaatttttagcaactgagctatcattttgtactgggggatatatgaacctcacatatggcaagatggacttttcttggt<br>ctttttagtcctgtgaggttttttcctttttttcttttcaatcagtatctagaaaaaaaattaccttgaaatctagatactttgagttcatgtaatattt<br>ttattcctattcagttccatcttccttctgcattaattataatgcaatgaaaactaaatcaataagtttagtctccaggcaatt<font color="green"><u>AAGAAAGTATCAGTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGG<br>TGAAACCCCATCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGTATCAGTCA</u></font>atgtagctctaggtagagcctttagtaaacctgaatctttaagacctctgaa<br>ctttttttaaaaaatgaaaaacgtacccagattttgaacatttgttttgtttaatactgttttgtactgtagatacagtaccaatcaatttagctcaagg<br>gtctgtttgacaaatgtcagaaccctggcgaccatggtgcatagaattatgtccaagcttcacatgtccaccatgaggccatcatatttttgactggggt<br>agagttctggaacagctcaagatggagtctccaaaaaggtgcccagcttctggtcatcactgaatgttgtgcctaagccaaagtcaactatttttatgtt<br>gtagttggcatgtagaaggaagttctagggct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr12	52531689	52531963	1000385	0	+	13247; Yb8AC1634; RIP_Alu_chr12_052_01	GCTGGACCAGGAGTCTCTGT	AGGCACTTGAGTCCTTGCAT	SINE	Alu	Yb8	gagaggtagaactcaggcaaaacttctcccccagttctgtcttagtctagttttcctgcctgaagagagacattttcaattcatcagagcttgtgcctcc<br>ctccaacttaagatctaaatgagtgttttcccacctctgtctatctactcacatcccaaatatctccaaagaaactggggaagagctctctaatggggaa<br>cgtgaacattccacttctctattagagaatcccacaaaattatgtcagagagctgctggaccaggagtctctgtttctcagtaccctgacttttgctccc<br>tccccactgctttgcttggctggaatcaattgacattgaacctgcctattgcatttaagagaagtgggagtacagaaagggtttt<font color="green"><u>AAAAAGTTAGCTTCA<br></u></font><font color="red">AATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATAC<br>AAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTG<br>AGCCGAGACTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGTTAGCTTCA</u></font>tgttaggaat<br>aatgcaaggactcaagtgcctccctaaggatctaattttgaatctacagggttgaatgagaaactagtccatttgaggcagcctaacatggggcacttga<br>aaatggacattttctcacgatctgtcctttcctttaaaaaaataatgtaacttagaagaatatgattatcctaaaacattttattttttaattaaagagg<br>gttcattatgctacccgtctcatctcgtctcagaggaggaaaaccctgtgttcagcaagtttgctaagaaataattataggttcagatcttccccaggcc<br>ccgaaattcaattaaaatttttttgttttaagttgctagcagtcacatggtatgtatgtgtgtgtgcgtgcgtgc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	467	178	NA	intergenic
0	chr12	63683559	63683560	1000386	0	+	17453; RIP_Alu_chr12_063_01	NA	NA	SINE	Alu	Ya4	cttaataaaacctatcatgaaaaccccatttaaaacttcaatctcgggctgggcatggtggctcacgcctgtaatcccagcattttgggaggccaaggtg<br>gggatcatgaggtcaagagatcaagaccaacctggcaaacatggtgaaatcctgtctttactaaaaatacaaaaattagctgggcatggtggctcacacc<br>tgtaatcccagctactcgggaagctgaggcaggagaatctcttgaatccaggagacggaggttgcagtgagcagagatcgtgccactggacgctagcctg<br>gcaacagagggagagcccgtctcaaaaaagcaaaaaacaaaaaatcccaacaacttcaatctcccatttccttccccagtactg<font color="green"><u>AGAAGGTAACAGAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>GAAGGTAACAGAATA</u></font>aacttatgtatcatttacttattatgtttattgttgtgctcaaaatttctttcacttctttagattcactcttcacccttatcat<br>ctctgtcctgtgttctgggaagctgacatctatggtgtatatcaacaaatctcccttgctctctggcttctagttgtgttcagctataggtgacactgtc<br>aaaatgttgcatgtggggaagaaagagagtttggtgtatttccctaaattggtctgtcaaagaagactagactgctcagcacagtgtcaccaagcagaga<br>aaactcctgatcttacatagggctcaacttgaggtaaggaactcaagattggcacattttcagaggctcaaatggctgacatcatctgtagaaactttt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr12	74585211	74585511	1000387	0	-	5142; RIP_Alu_chr12_074_01	NA	NA	SINE	Alu	Yg6	catcaaacagaccagtgtgatattattaaataggaagcacaaccctaggcaaacaggatgaaatccaattatataagggtgagagtaaggacttatataa<br>accataaaaataattatagaattggctagccaccatcactgctttaaaagacctgtgggtcagggctgatctatgatcaacgatcatgatcattgctgat<br>catgaatcagcaatatcatgtcattgtgggggaataaagctaagaccatccagggcagatgtaattcttcctctatgctctgagtacatcagccatgact<br>gtgctacaaataatattgctccctgaacttaaaaagaaaaagtctcaaatattagtattttagtttagccaataaaattggcaaagtt<font color="green"><u>AAAAAATAATCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATAGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAATAATCC</u></font>tctgtgttagtgctagtttgaagcaagtatattttcatatacttctgatggaactcctaatgataccacctttctacaaggcaattt<br>gacaacatgtattaaaaacctttagctgtgaatattcttggagcaattccaatttcagtatttttttttctcaaaagaaatcactggagacagatgcaaa<br>atttagctacaaagtgtttattgcaatataatttatatagcaagatcgggtaatatggtaaaacgttggctaggcacggtggctcaggcttgtaatacca<br>gccctttgggaggccaaggtggatggatcatgaggtcaggatatcgagaccatcctggccaacactgtgaagccctgtctctactaaaaatacaaaaatt<br>a	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr12	82566416	82566713	1000388	0	+	237938; RIP_Alu_chr12_082_01	NA	NA	SINE	Alu	Ya5	tgaagatgaaggcctttatgatgctctacctccacttaatagtaagtatattttctcttccttttttcttaacattttcttttcttcagcttactttatt<br>gtaaacatacagtatataatacttatataaaatatgtgttaattcactgtttatgtcatcagtgaggctgctagtcaatagtaggccattagttgtgata<br>ttttggtggaggcaaagttataaggggatattcacctgcatggagggttggtccacctaacccctgtgttgcccaagcatcaactgtatgttcaaatata<br>tgtatttttatttttatagtatgagttaattggttttggtattagttttcagagctgatataacaaaatatcatctgggtggctt<font color="green"><u>AAAAAAAACAAATTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAAAAACAAATTT</u></font>attttctcacagttctagaatctggaagtctaagatcaaagtgtgggcaaagttgattctttttgaagactttttttggcttgcagg<br>tgaccagccaccttctccctgtgtcttttattgtcttccctctatgcatgtgtctgtgttccaatcatctcttcttataaggatatcagtcatattagat<br>taggtctcacactaatgactgtattttaacttaactacttatttaaggcctatatcgccaaatataatcacattctgaggtactaggggttaggactaaa<br>cataaattttgtggagatgaaattcagctcatcacagtcctcaattaatccttatctttataaaatcctaaagcaaaggaacctaaacctagaccaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr12	85047457	85047767	1000389	0	-	pAlu12-86456173; 17348; RIP_Alu_chr12_085_01	NA	NA	SINE	Alu	Ya5	attagtcagtactaaccaacattgtcaaagaaatgcatcttttataagactaaatttaaatgtttatatttttgatgaaaattatttgtttaaaaaccca<br>caggctcatgtgtcagctatcctttgggctgtaaaaataaaacaaaatcatttatctgcttttcagggaacataattccatcagtataggcaatcataga<br>tacttgtttaaaaacttcaacttaaatcctacataaccaactttcatcactcctcagagttaatgctctctatctcttagtaaaagtatcccaattccag<br>agtgtctcaggcatttttcacacagtgcatgtgctttatgttgtaggggtagactgatttgctaaagttggaacaggaattaaaagaagtt<font color="green"><u>AAAGATTGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCGTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAGATTGT</u></font>gtaagcaaaaactcagttgtatgtaagcaaacccagttccccgtgaggaagagaaaaaggctggagtcctttaaaattaa<br>ctctctgtttttctctctgtggctagtgagccttatttctccctttcccaggcattgtgaagactgtttctctagctgtgcagctgcaaggtcactagac<br>agataatctcaagttgtaaaacatgttgttccttgaaaagtaataaataatgtaatgcatgtcttaattgaataactgtctttgtttctcacttctgtaa<br>tatgcttccccctgcacagatctccccccaccccacgaaatgcttaaaaggtagcttgactctttgttcggggctcagtcctttggatgttaatccgact<br>gggtcagtgca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MGAT4C:NM:013244:3/7	
0	chr12	86862303	86862304	1000390	0	+	239047;1104685533784; RIP_Alu_chr12_086_01	NA;NA	NA;NA	SINE	Alu	Ya5	ggtgggttatttagaactttttaggaaaggggaaataacttctgggtcattgccatggaaagggttggtaacgtctatgttacaaatgccatggcatttg<br>taaactggcatggcattgggtgggagtgtcttatgctaatggacaataagggcagctatggatatcttccattgccatctgctggttcttgccagtttct<br>tcacttcatcctgttggaattaagaaataagtcctgttgatcctctacctcaataagatccaagaacaacctctttttaatattcgaggcactgtaaggc<br>agtggcatagtttatattctctaatggaaaaatagaaaactagaaaatagcaaaggtaaattctgactagagggagatatagaaattta<font color="green"><u>AAAAGAAAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>GAAAATG</u></font>tatccttttgttgtaacatgtacaagttattttttaagatgtaacagctggaacctatagtacctaactccaggaacaatggtgactattttt<br>taatgttgaaggtgaaggaagagctatcacaaggcaaaaatccaaaaagtttctcagcacatgagtagcatcttccacggaccccttgggatccagaaga<br>ggtcaaatccctcagttatatattatagctccacgtagcttgctttatgacaaccacaaacatgcaatatattttgtggttattttatttgtgcctttca<br>cacctcctcaacagtaagcttcataagagcaggaacctgtttgttttggcttaccatttaatccccagtttctagcaaaggaattgacatataata	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr12	92882476	92882771	1000391	0	+	Yc1RG189; 963; RIP_Alu_chr12_092_01	CAAAATGACAAGGAGCCCATAG	ACAGACTTAGTCCCAGGCATTC	SINE	Alu	Yc1	tttcaaagtcactcccagattttagttatttgttatatagcatcccatttctaggtaccaaaatccatatcacttatttttgctatataacaaattaaca<br>cttagtggcttaaaacaacgtacatgtattatttcacagtttctgtgagtcaggaattttggagcagcttagcttggcagttctggctccaggtttcata<br>tgaagttgcagtcaagatgttggccaagacatgtacagaaaatagctatgggatcagaaccccagcctcccagatggaatccaggggaaaggccagttac<br>acagtctggacctcacagtgagggatgaatgggaaatcctcccctccaaaatgacaaggagcccataggccaagaattctgatt<font color="green"><u>AGAATTAGGAGCTGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAGTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AGAA<br>TTAGGAGCTGGG</u></font>tcaggctctggccggcatagggaatgcctgggactaagtctgtgagtggcagaactttggtgcccaaagccaggcagggataggctca<br>cattaggagctgctgcatgacagccctctcagcatttggggttagttaccacataacataatattcaaattctttatccttcagtggcctttctccagcc<br>acgctctacttcatcaaagtccttctgattctgtggtagttaatgcctcaggcatagtctgtccagtgcagagaacagaggggccattaaacgcatccag<br>aaactacgcccaaggggcttatttctgggatgaatcaaacaaaaggagattgtcatgacaagaacttgggtaaggattgagaaatgtctctagatt	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	53	409	97	NA	intergenic
0	chr12	95229495	95229496	1000392	0	+	8929; RIP_Alu_chr12_095_01	NA	NA	SINE	Alu	Ya5	aaaaaaaaggtaatccaaaatagtaaaggcaaggcatttggcttttgtattcacaggctctaacatattatttcttagtgataagtaattgtaaagtttt<br>attgcagttgcaaagttacctacattgattatatgtaatatactcatggcaaaaacatttactgtaagcaaaagtatacagcgaagtgttacagaaatga<br>aattttgcaacctcagtaatttttgagtcctttcactggtaaattcaacttgaaatttactttaaatttattataccatatagtaacattaggcaaacac<br>taccacaaactctgtgatcagtttaaataactaaccaagtagacattatatgatcttgtatgcaacatggggaaagagaattgta<font color="green"><u>AGAAATGCCATTAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAATCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAANAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AGAAATGCCATTAAC</u></font>ctttatttaattatacaatgtgagctgggataaacttgaaaagaatcttgcctatatcattgtatcaagaaatttaagcc<br>ctataaaaagaaattcctcccattcataacagcagccaaaccatgaaacggaatggagaggtataggaactgcataaatatttactgagaaatataagac<br>ttaagtataaaaacatacaatgccaccaaatggtaagaataagtaaggagaagatactggtcctccctatattaattttataagttatataaccactaag<br>aaatcacaataagcttattcttagaacaaaataaaatgcctaaaatgtatcaatagaataaacagaaaaaatccaaaaacattctaaaataagaaagagt<br>atatg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PCTK2:NM:002595:4/17	
0	chr12	100838212	100838293	1000393	0	-	13652; RIP_Alu_chr12_100_01	NA	NA	SINE	Alu	Yb8	catgtgccaccacccccagctaattttgtatttttagtagagacggggtttctccatgttggtcaggctggtctcgaactcctgacctcaggtgatctgc<br>ccgcctcggcctcccaaagtgctgggattacagatgtgaaccaccacacctggcatacttttatttttaaaaaagatatatttactttgtattatttgga<br>actagtaagtgagacctcctaaaagaaaacaaccaggatacatgactattaacatcaaacagcagaggacatatgaaaatctcattggtgggagagctat<br>taaagatgcctcccattgggaataagctaacacatgaagttgcacaatccttacagatttttctcaaacacattaaggataa<font color="green"><u>AAAAAGAAAGTGCTCTTT<br></u></font><font color="red">GCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGAAAGTGCTCTTT<br></u></font>ttaaaaatgcaaaatgtcttctgcaaatttttactaatcctaattgtccgcaatttaaaacatttgaattgataaacacctacctggaaatcttggatga<br>aagttaggaagtagaaaataaaaccaaaggccactgtccattcacagatcgcactcactacgtgatatacataatcctaatgcaataataaagaaacaga<br>atttagccgaaaaagactcactttaatgtacatactgaaatacaatgaggagtttcaaccaaaggaaaaagctgtccagtgagcataagtcagaactttg<br>aggatatacggtaagcacaaccacgttactaagtgtcagggcacctgcccactgagaatgcgaaggcaggtattccaaagtt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DRAM:NM:018370:6/7	
0	chr12	102817538	102817854	1000394	0	-	pAlu12-104226260; 14809; RIP_Alu_chr12_102_01	NA	NA	SINE	Alu	Ya5	gacagattgttcttgccaaaataaggagaaatgtttagaatcattttccaatactagtaacactgactttattgtcaacattattttcagaaaaaataat<br>tatagtcaccaaaaatgtgattttaaaaccactcaacatatatattttccttcatatataaagatatatatctataagcatcagccatgagtattttttt<br>ttttgcttagaattaatttttgctgattatattagtgctctatgctctgtgactgtcaggcagtatatacttcctgaggttcattcacattcaccttgtc<br>atttacactctatgccaaccgtgtggaagaggcagaggatccacacctctgtgggctctgacaggggctgcttgtgagccatctacac<font color="green"><u>AAGAAATGGGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATGGGGG</u></font>ccacacatggcttgaaaacaaatcattagaaaaaatagtattttaaaagctcctgatgatctgtgtgttca<br>cattcccttcacttctctgggcctcagtttcctcatctacaaaatgaagggtctggactagcctagatgatttccaagaaccccttctgctctaaaattc<br>tgtcgtttcagttctgaaatctcaacgatgcccataattttaaaggtttttaaataaaaactcaagggatgaatcatcagctgaatttctttctcttccc<br>tttcttgaaaatcatttttcattgtttgacataagctcaatctctatcttttctgacaccttcactttcttaatgtcccacattcataaaaaaagtttca<br>agtaatcgattttatga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LOC253724:NR:027249:4/16	
0	chr12	121576305	121576621	1000395	0	-	19405; pAlu12-122818682; RIP_Alu_chr12_121_01	NA	NA	SINE	Alu	Ya5	ggcctgagaatttgcggtggagaaaggggctggggaagagaaagacgatcaggagtggtctctgaaaagtattgggtcaaaaaggcagtgtctgtaaagg<br>gtagtgtgggagaagagagcgacttgtagctatttttttttttgtacgctcaatgagatgcttctagttgcataatttcaattagtgttcgtccgtgtaa<br>accttattattgtgtattaacgagctaggaaggtattgctgaaagggagtgaaaattcaacttaaaaggttgtggaactaccaattctgactgatgcgcg<br>gtttccgaagtggcccgtgatgtaatcaatttgaagtccgagaagcgttacagttaagtcttgtcactgaccttgttcctttaaatt<font color="green"><u>AAACTCTTCGTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAACCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACTCTTCGTTG</u></font>accccagaggagctacagttcgtaaattatctattctgaacaataagcctgcgtgtgtataagataccca<br>attctgacggatccacattattttgtgcttacctcatttttattccgttaaaaggaaaatgtaaagattttgcattcctttttactgactaaaaaattac<br>atcattttcgataataattatgactcttaaacatagtgatagttttaaagtttgctcttcctaacgattggaatgcctgggattaggcagatgattttct<br>ttttcccccatacccctctattatttaggtgattgagtttaaacccgtttcttttactgtcttcctttgtttagtgttttgggcctcagtatacttaaag<br>agtaatactatttttct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RSRC2:NM:023012:1/10	
0	chr12	125471070	125471368	1000396	0	+	Yb8NBC225; 2166; RIP_Alu_chr12_125_01	GAGTCCAGCCCATTTTAGCA	CATGATGGTTTGCTGCAACT	SINE	Alu	Yb8	gcctcccgggttcaagcgattcttctgcctcagcctcccgggtagctgggattacaggcatgcaccaacacacccagataattttgtatttttagtagac<br>actgggtttctccatgttggccaggctggtcgcaaactccccacctcaggtgatccgcccgccttggcctcccaaagtgctgggattacaggcgtgagcc<br>accgcgcccagctcaaattgcattttaaagactgcaagcaaaaattgctttatttgggagtttccattatgatgacacagcaaaaatctcagtgtatccc<br>ctacagtctggttcaacaccatccatctgactgagtccagcccattttagcatgggacattgagtatgttttcataactgttatc<font color="green"><u>AAGAAGTATTTTTAT<br></u></font><font color="red">GCCGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTTAGGAGGCTGAGGCGGGAGAAGGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAAGTATTTTTAT</u></font>atgcttcacactaattaaaagatgataaagtttgatatgagaaattaaatgacatgtttgtgctgggtaatattccagtggcctct<br>tggcacataatatggttaatatttcattgtgttaaattagagaaggggttgtaagagagttgagtcactaaagcatgcccagggctctagactaactgaa<br>ctaaatatagcaaacaagcataatggcctcgaccacaatcatattgcaagcagtggacaagtttcagaaaaagcaatactattatcacatttaaattgaa<br>ctgaaattggtgtgcagttttgttttgcatttaatgtttaaatagatcttagttgtatacttctgtaagggcaataaacataagatatctattcccaat	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	449	135	NA	intergenic
0	chr12	125765917	125766240	1000397	0	-	pAlu12-126923812; Yb8AC749; 14203; RIP_Alu_chr12_125_02	CACAGGGTCAAAAGTGCTCAATA	CATCTCATGCTATGGTGTCTCAG	SINE	Alu	Yb8	tagacgtggcttctgatttttggttgcaaatgggtttcctttcctctgttagagtttgcacaagttgttccctcttcatatagcagagaggagattctca<br>ttctaaagccagccagatcagagcaatgactgcactcccagtggagaatagtgttgggttcacacatgacaggatgtttctaggatttgcattcattttc<br>tctctgaaagactatgatctagcttcctaatcctctatagagtttgcaaagtgttctaaagaaactttccttccttcctcccttccctcccctcccctcc<br>cctctcttttcttctttcctccatctccctgcaaaatgttcacagggtcaaaagtgctcaataatggtttacagggtagactttt<font color="green"><u>AAGAGAGAGACATCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCACAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGAGAGACATCC</u></font>atattggctaaactaactaagcaccaactctgtgctgagcgctgctttaagagtcgtactt<br>tcatcgtcttatttaactacaacaacctctcattcttatttaacaacaatgaccttcctcattcccgttttagagatgaggaaagtaaagcttggtgctc<br>aagagcttgttcgatgtatacttagagagatagtggaagggctgggatctaaatcagacaggtccggctccaggtcccaagtgcctgagacaccatagca<br>tgagatgaagtgctaagatcacttcaagcatgatgcagggagggattggaggaaagtgatgtgagttacatttgcaccacagatgacttgcctgtggtgg<br>attactgtgccagggagattgttt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	667	328	NA	intergenic
0	chr12	126226396	126226705	1000398	0	+	668; RIP_Alu_chr12_126_01	NA	NA	SINE	Alu	Ya5	gaaacagagtcttgctcgtcatccaggctggagtgcagtggtgcaattttggctgactgcaccctctgtctccagagttcaagtgattcatgtgcctcag<br>cctccagagtagctgggactataggtgtgcaccaccatgctcagataatttttttgtatttttaatagagatgtggtttcaccatgttgcccagactggt<br>cttgaactcctaggctcgagtgatctgcctgtgtcggcctcccaaggtgctgggattacgggcatgacccactgcacctggccatatttttaatatttta<br>atctgaacaatttagaatagaatatagagaaaacataaagaggaagagatatgaatttaagtgggtatatttcattggacgagt<font color="green"><u>AAAAACTCATTGCTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAACTCATTGCTTC</u></font>aggtcagtggacatcgtacctatcatcacagatttcttggtcaaagtggcacccaccccaagacttacgtaagt<br>gtttctattggtcaagtgcagtagttcacacctgtattcccaatattttgggaggccaagttaggagaatcacttgaggccaggaatttgagacgagtat<br>aggcaacataacaagaccccatctctaaaaaaaaaaagaaaatagcaaaattagctggacaaggtggttcatgcctatagcctcagctactctgcaggct<br>gaggtgggaagattgcttgagcctagaagttcaaggctgcagtaagctgtgattataccactgcaccccagcctgggtgacagagtaaggccttgtctca<br>ataaataaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr12	128626257	128626571	1000399	0	-	449; RIP_Alu_chr12_128_02	NA	NA	SINE	Alu	Ya5	gcatatatgtttatacacacctatacacatacttatagacacacatatacaaatatatacatatatatattctgttgttctgtttctctggagaaccctg<br>atacagtcaccattttcatggagctcattctgtgaatctattttaattacaaatccagataattattaattgtaaaacgttatagtaagaaaaacccaag<br>caacacttaagaagaaattgctacagtttcaacccacaccatttggagttaatttttcgggcagcattatcgcggagatggtcagtgtaggtagagggta<br>tgcaaagagaaagcggagcttgcatgcaaagacgcatgggccgaaattggctcccacatgtgaggactggcctggaaaatactt<font color="green"><u>AAAATGTATCTATCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAATGTATCTATCTG</u></font>cagacataattgaattaaccatccacaaatctacaggtttcattccagaaaaaattcattccagaaaaa<br>cggaatttttgtctttcattaaaaagtccaatctgaccactaggcccgcgtttctccttggtagcaattggtctgagctttctggcatttacggatttta<br>gcaaggcaggacttctcagtctggcacatggacgcagcgctcactgccttctctttgatacccggtttgtttaccttaccaaccggccccggtaatcact<br>tcaggtttgaccattgcagtcaaggatatcttcacattatttagtgagagatgtctaacaccagcatgcaagcgagtggcaataaattatttcagcagac<br>agccgctggggagcc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TMEM132D:NM:133448:2/9	
0	chr13	20628918	20629223	1000400	0	+	pAlu13-20660817; 20606; RIP_Alu_chr13_020_01	NA	NA	SINE	Alu	Yb8	gatgtaaaacgaatgctcaaaaggaaggtcatcaattataaaaattatgaaaggagaacatgaagtatcagctataattttttcatgcataaaggggtga<br>tatagtaaatataaggcttccttccttttacaaagaaataaggagagatgaagcaaccatagggaagtggaaactatataattttcataaagacagaaga<br>tgctccttcttcatgcaatttattatatcttccagaaaagcagaaaagacagagaaaaaaggataacaagtactttattgatatcctagcatgagtcagt<br>tctaatggcatctgagtattttccgaagtgatttatccttctcatgggtctccataagtcaggaagacttctagaatggctatt<font color="green"><u>AAGAATTCCACACGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAACA<br>AAAAAA</font><font color="green"><u>AAGAATTCCACACGTG</u></font>taagtaataattgccaaacactgtaactcctattaaggagggggactgtcaaagaatcagactggttatttagaattg<br>gcagttgttataagtcattagtaggccaatggtaactgctgttaaatactaaagaatcagatacagtcaggcatcacttaacaatagggatacattctga<br>gaaatgcattaggtgatttcatcatgtgtgaacatcacagtacttacacaaacctagatggtataccctaccacacacctaggctatatggtatagacta<br>ttgctcctaggctacaaacctgtacagcatgtaactgtcctgaatagtgcaggcacttgctacacagtgataagcacttgtgtatctaaacacagaaaat<br>gtacag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C13orf3:NM:145061:7/9	
0	chr13	21421532	21421848	1000401	0	-	pAlu13-21453430; Yb8AC1648; 14345; RIP_Alu_chr13_021_02	TGCAATGGGCATCAAGATT	GGAGGTTCTGTGGTTGAGGA	SINE	Alu	Yb8	attagtgatattaatcattgtcagtttatttttcctcctattttttatttggttaggtgctgacatgtataagctttaagtaaatggaacgtccacttgt<br>attttattgcttgtcacaaaccctcaaaccacagcaacagtcacagtttatgttagaaacagcaaaatcgatgtgaattctggacttgacagtgacagat<br>ggaggcccttatgcagatgtgctcgctgcttcgcaggacttgaggtccttgggaattctgtgtgttatttgtgagacaggtgactcggaaggcagtgtgc<br>ccaggcagcagctcccctccagctcccacccacaggactgcagcactcggctcatttgcaatgggcatcaagattgactttcttt<font color="green"><u>AAGAAGTAAACCCAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAATAAAATA<br>AAATAAAATAAAATAAA</font><font color="green"><u>AAGAAGTAAACCCAG</u></font>aaacatagaagcctgtggctatgtatcaactgccttcagggtttccgcagtctgtcctcaaccacaga<br>acctcccaggggaggtaaaagctgagctcatggctgggaaccagaacaggagcctcacgcagtcccagaactgctgggtgacacctggtaagtctcatct<br>ccctttgggacctggtctcctcctccaaaaatagtcagtagttcctacaatgcacattttaaggttttcatgctcaaaaaacatctgtgagcacttacta<br>tttactgggagctgagtgacggtagggccatgtgttctcactggggaagccatccaacacactcccttccaggtaccatcctctcacacctgaaaccctc<br>cacatatccgaggagga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	450	118	NA	intergenic
0	chr13	22955657	22955973	1000402	0	-	238197; pAlu13-22987554; RIP_Alu_chr13_022_01	NA	NA	SINE	Alu	Yb8	aagaagtcttatctgagattcctcttatggaacaaagttccatcaaagccaatttaaaagcctatgtaaaaataataattatttttgctgcactgcatac<br>aaatacttaggccaagtataataaccaaaccagccctaccatgatttatctttagtaaaatggggaactggagagagaaaaaaattatttcaaaatgatt<br>atatatctgttgttagattctagtcttgcctaatgtttttttccaatttttattattttctacagtttggaccaaattctaatttttcttggctacaagt<br>cttcaaaataatgttttcaatttttttccgtctctttttcatttttcctaatttgaagtcactgaaaactaagttgttcttcttt<font color="green"><u>AAAACCCTGCAAGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACCCTGCAAGCT</u></font>gaagacagacaacttaaacttcggcagaaaataacagtaacctgtttacatacataaggcactttcat<br>gcctgcctactaatgtatggacttcagagtaatgtggcccatatcaaattttttttttgagaaagggtatctatcactctgtcacccaggctggagtgca<br>gtgatgcgatcttggctcactgaaacctccgcctcctgggttcaagcgattctccttcctcagcctcagaaatttgagacaggtctcagtctcaaatttc<br>tgaggctcacactcctatgcaaggaaggaaggcaacatgttttctaatgccacatgaaattaaagcacaaaatgaaacttggatgcttgaaagaacagac<br>tttctgtaagttattgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	22967369	22967660	1000403	0	+	14819; RIP_Alu_chr13_022_02	NA	NA	SINE	Alu	Ye5	tcctgggatctttaaacagccagagtaaagaaggcatccaagaagtttcttcatttcccctttccttaaaagtcaaacatttggactggacacggtggct<br>cacacctgtaatcccagcacttttggaggccaaggtgggtggattacctgaggtcgggagttcaagaccagcctggccaacatggggaaagcacatctct<br>gctaaaaatacaaaaattagctggaagtggtggtacgtgcctgtaaacccagctacttgggaggctgaggcaggagaacctgggagatggaggttgtggt<br>gagccgagattacaccattgcactccagcctgggcaacagagcgaggctctgtctcaaaaaaaataaataaataaaataaaagtt<font color="green"><u>AAACATTGGAGTTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCGCTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAACATTG<br>GAGTTCC</u></font>ataaaaagtcaacaaagaaaatgagggaagggactcctcaaagaaataatgtaacaaaatctctcagaacgaagagtcatgagattccagatg<br>gaaagagccagccaagtagccacgcaatttaagagcaccatcataccagggcactttgtccgaaattttcagaattccaggacaaagagaagaggtttaa<br>aacttctaaaggtaagaaaaaagaaattccatgtaacttcagagatctcaacagcagtagtggaagccagaaggcaatggaacagtggcttttaaaattt<br>taaaggaaaatgttttccatcttaaaattacataagcccaactgtaaatcaagcatgaggacatataatggcatttttaaatgtacaagttc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	28789573	28789874	1000404	0	-	pAlu13-28821469; 52564; RIP_Alu_chr13_028_01	NA	NA	SINE	Alu	Ya5	acagactttatcccctaagtatctgaagttttccctccacttgcctgtgaaagcacatgccacggggctgaccctgccctggccccacagatcagctccc<br>acacagggaacacgaggattgcagacgcagacggagcaaagcaagaagagggaaaagcaaaggtggccacaacgcaagtgatgataatcactccagtgta<br>actggaaggaggtgaacagaaaacatgaatgatgtaatcagaaaagacagattctgatgccatttgtaagatgaattgaatgggaacagttcaaggtagg<br>atttatagggattggatagaatgaagaaaggaaacattatctcgatcagaatatatcaaataaaagaggaaacctggatgagttataaact<font color="green"><u>AAAGAGAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAGAGAGA</u></font>gagagagcgcgcgcacaagcgaactcaggagagttagatgcaaggactagaggaaaggaaatcagttttcagctgccaatagtaatttt<br>ttaaatattaagaggaatatctgatattgaggcactaaagttaataggagaaacaatctgaatactgggaaggtggattttaacctatttaaggtttgtt<br>ccatttcaacacacatgtactgcatgcatgaaggtagaaattgtagctaggaatttaagggagaatagggaggtttctgtattcaaatagaggcctagaa<br>aaattaggcctccattagaagcctaattattacctggataagactaagggataattaattctgaagattattatgaaaagataaggacagaagagtgaac<br>aa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:KIAA0774:NM:001033602:4/14	
0	chr13	28852772	28853081	1000405	0	+	30989; RIP_Alu_chr13_028_02	NA	NA	SINE	Alu	Yb8	tagagacaccttccattggggaacactggctcagaacagccaacactgacccttatgccagacagccgtgaatctcagtgacattacagaatagtttcag<br>actgtaaactcccttgtgctactgtgaattttgttatttgaagcaacatatgtaaacacttgcttcatctttaaagacaaatagtttgaagtggggagtt<br>cccaagaagaagaggattcctctgccctactcatttctctgggggtttgacttggcataaccagtgagtcgtgatgtgttgattgtctcactaacttcca<br>ttcctaatagattgaattgttcagctagaagaaggaacacacgagaggagatgggttcatgggtcagtccctttatcagtgaagat<font color="green"><u>AAAAGACATCAGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAGACATCAGCT</u></font>ttggctgctgactctcatgctggagggcagctgtgactgtcagcttgtgcatgcccctctaggaaaatctacattg<br>attttaggaggatgatgctgtagcaagggaagaaagaggtggaacaacccaaatgagacttgaagctgcctaggatcctttctgcagctgggaacctaca<br>gctgggctctcaggggcatgtatctgggcttctgcccagatacagatgctggtattgaggaggagagaggaagctctgtgccaggaaaaaacttaggaca<br>gataaagtagactagatagagtgagaagaaagtttgcaactgtggcaagcaaaggaggaaaatgcccaaaattcccaacacaataaagcaaggtttgata<br>ttgtgtaaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:KIAA0774:NM:001033602:6/14	
0	chr13	41053117	41053437	1000406	0	-	pAlu13-41091650; 13462; RIP_Alu_chr13_041_01	NA	NA	SINE	Alu	Ye5	aaaaagaaacttaaacgtattgtttctgtgaaggcatataaaccatatcctagggcagtggttttctaacagtgtaacaagaacctttgaaggatgtttg<br>gcagtggaggggggcagtgagtaggcagcactttgtgccccattgccctccatccccaattcaactacaacaatttcacatgtatagataatgcaggatg<br>tttcataagctgggcttttgtgcagtatttcatttgaaggaagggttccactgctaacaaatttttaaaggaaaggaagaattagaaagccattgtgtta<br>gggattatgtaatgtactggattattatttctcacaggctctgagggctttctttctggaaaaggtgccattgaccctctgatt<font color="green"><u>TAGATGACTCACTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGGTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACTCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGACGACAGCGAGACTCCGTCTCAAAAAAAAATAAAATAAA<br>ATAAAATAAAATAAAATAAAA</font><font color="green"><u>TAGATGACTCACTCTC</u></font>ccttgacagaagaaaacaaggcattaggtgttcctaaaactaagagaagcaggctttctcatt<br>acaattcttaaacataccattaagtttatatagaatttggggggtaggaatggccttggaaattattttcaccaacctttttgttttacagaagagaaaa<br>caaagattcaaagaggttcaatgctttgcccaaggtcacaccgttacagtgcaaagccagcacttctgacttccacttcagggctcttagttgatgtttc<br>atccctgtttcttatagctgttttatctctgttcaatttgatttttttaaactgtaattcaggagcaagtgtatcatttatgtaaggtactctgtcttct<br>cctacccttggcacctcacca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:KIAA0564:NM:015058:42/45	
0	chr13	72972923	72973240	1000407	0	-	237949; RIP_Alu_chr13_072_01	NA	NA	SINE	Alu	Ya5	tctggagagccaccgtttcccagttcatagatggtgccctctcactgtgtcctcacaaggtggaaaagggagaactccagtgctttcagccccttagcag<br>ggtactcatcccattcatgaggctctacccacctcctaatgccatcacattggtgaataggtttcaacatatgaattttggggggtacacaagcattcag<br>accatagcactttccaaggatcgctttgcagtttcctattctcagatgaacacattcctaaatgtaacagatctgaaagtgctggataatttgaatgaat<br>gctggttacgcaaagaaggcatatatctttgtttgataaaaatttgttacaattctctgtgaatggagaaaagatttatcagataccttt<font color="green"><u>AACAAGATAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>AGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTACGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACAAGATAG</u></font>aaaaaagccaaatgcttctctcttagataaatagaaatgaaggtctgtcttacctattagaccttgattgta<br>agtcattatctcacaggggtctgttttacttaactaggcccaacatccaggtcaggaagagcttttcctctagccgattcatatgtgtattcacctaaca<br>gatgctttaaacacatattctctgcaaagctgtatggcttcgctaggagtagagaacacagagatgaacacgatagggtctttgtccctgataataactt<br>aaagatccatcaaagttgtacagtaagtaacaataagatttctgttacagcacagtgccaagtctgagctcctgcctcaactttcacagattaatccttc<br>atagaaatacattaatca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	78559083	78559403	1000408	0	-	6509; pAlu13-78597629; RIP_Alu_chr13_078_02	NA	NA	SINE	Alu	Ya5	aagctgttcatgcctaacttacctttctcaatctatttcacctgcttccattttttttttttgtttagtaaacatctgctttctattagattgttttatc<br>cccttaaccttcataaatgacaattaagtccatctagtctgtcaatagcatgtcatttatttgttgctacagctgagcctgaccttcattgattttattg<br>gagtaatttgctggaaatgattttttaatgttggatttattgcccaggcacttcattgtcagataattgaagtaaattgtatttttttttcaaaccaaaa<br>gcaagaagtgcaggaaagagatatatatattattttgaataattatttcctattgggaaatattactattgaggtagagagacatt<font color="green"><u>AAATGTGATGTCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATGTGATGTCAT</u></font>atacttttcaagtttgcaaacatagattgttcttgagtcgtgcacacttttctccctttttggct<br>tttccttaaggatagctgaggtagaaataggagttggtaatgaattacattcaaaaatgatgttgcaaattagattagctatatacctaaatctatcaag<br>tagctacaccaccacctcttacataatgggccttgctattgtgatttaactgcaggttaaattataaatatgctgatgttacatagttaatcttagcttt<br>tacaaggtattatcttattccctcagtatcagtgttaacaaggcttttttatgttgtgcgtttggttctccaaaaattttgattgtctgcccagatgata<br>attagtatttcagtccctaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	79097095	79097096	1000409	0	+	22268; RIP_Alu_chr13_079_01	NA	NA	SINE	Alu	Yb8	gaatttttttcatattttactggccagggacccactgatgtaggtctcaagaagttatatgtatcagaataactttggagcttcgtcaagttattcacat<br>tgaccccttgccccagatttgacatatcccccttttcccaggctgggatctactttttctaagttaatacattgtgtgtcttccccaggattttggcagg<br>tatcccatagtacatatcaaaacatgaaaggggtaaaagaatgggggcagggcaaagttgtatagctttgaaatttctcacgggacattctgatacccca<br>gccttcaaccctcatttgaagacagttcttctctacatagtgttaggagggcttacaagtaattttcagggactcacgttaactta<font color="green"><u>AAGAAGTACAGGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGAAGTACAGGTG</u></font>cctacagattgattggggaaataagctggggacaactaagtaatatggaggccatctatgtagcctgaactatcattg<br>cgtgttaaagtaacagattcaccatcattaagatttaggcaagaggaagacatgcttagctttcaatgggcaggaacctgctaagttactgaactttcaa<br>taaaggatatagcgggtctgattttgcttggccgtttttcagattttctgtgctttaaaaagattttgtgaatcacagaatgtcttctgtttcgtggagg<br>agttgctgtgaaccttccatagaagatggtatgccattttaccactttgtttataaaatttattcatattggtatattcattcaattactcatttaataa<br>attcttag	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	81787213	81787538	1000410	0	+	Yb8NBC480; 239124; pAlu13-81825749; RIP_Alu_chr13_081_01	CCTCTCTCACAAACAGTGCAG	TCGCAAGACACAGGCTATCA	SINE	Alu	Yb8	ctcattattttgaacactgcacactagaaaaatgcttttttctctctctcttttttggtagattgtgtatgaataatgggataaaaattggaataaagag<br>aaagtatatgatactcaccttcatctgtcttcagagttttagatgatctccagtctgtttttctaaggttagaagacaagacaagtatgaataccttaca<br>taacacctactgtagttaattttaaaggtcactcttttttttttcaaaaataaaaatgacaaaaagttactggctcatctcgtcttttctgcttttcctc<br>aagggccaggtctctgagttcctctctcacaaacagtgcagtgatattatgtattactcttaccaatttgtgcatgtgatttt<font color="green"><u>AAAGATGGTATCATTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGATGGTATCATTGG</u></font>gatactttgaataatgatagcctgtgtcttgcgaatttagctaagaatctttcctct<br>ggaatcatttcagatgaacagtaaggtaaaatacagtgaagacaggaaaactaccgattctttgaaggcagtgtggcagcctctatgtcctagttttgtt<br>ttctgttaatgtttattcaaaatttaaaaactcaaataaaaaatggtattccaaattttatgcctattacaaattaactacaatagaaaaaatagagtat<br>tatattctcttctaaacttagttagggtaacataatttaaagtgtattaatttgtcatgaattattcaatcttgtttctactattgtggtgttctcacat<br>gctgaatattaacttgtagacatcaa	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	65	457	114	NA	intergenic
0	chr13	89219385	89219521	1000411	0	+	16768; RIP_Alu_chr13_089_01	NA	NA	SINE	Alu	Y?	ctattagttgtaccttaaagtttctgagcctgccttattaaattttcttttacatttcatatgcttttgccaatttgcagctctttctaagagaattcca<br>caattccatattccacatgactaataagttgtatccattttgttctttgacaaactaactagtttatttatgtgtgagattaaaactacatgaagtttct<br>ggaattataacggttcccagaattacacattttgtgataaaattagtggttctaaagctatatggatagttaagtaagaattcccttcattttcttgaaa<br>ataataatagagcccatgattttcccagccaactggccctcgggattttcttttggaaatggacctgtttactgaaaattaatt<font color="green"><u>AGAAATGACCCACCTG<br></u></font><font color="red">CGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGAC<br>TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATGACCCACCTG</u></font>actttgactaagaaatttgctgaatttggcatctagaatagtatttt<br>gtttgtcttaaataatattttacacaaggcgagattagaaatcatacacacacacacacacacacgcacacacacaaaaagaattgatactctttgataa<br>ctttttgtcatctgctaacaaatgcttgtatccatgacagaatcctgcctgagaattttgttctttgtaatatactacctggagggaacactgtagtgaa<br>tgcagcctcacatccttcacctacctttattagaaggttacaccacacagcaagaagaatctaatgattttgaattaccgaaattgtctttgctgtttca<br>taacagcgtataaaattaattgtccaaaaccccactt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	89348563	89348564	1000412	0	+	5444; RIP_Alu_chr13_089_02	NA	NA	SINE	Alu	Ye5	ttctcatctattgtgttctacctttctttgaaagcctactacttagaacaggctaaaggtggtgcagttctaatgagctagaatttgttaattaagtggg<br>gagtttttcaacaccaactctccaatatggccattgaaaggatggaagcatctgagctatggagaaaagtcactgcaacatacagactttgcagagcagc<br>aaaatcaaaagtaatccaagcagcttattcagaatcagaaaagacaggagaattaggcacctcaatgagctgactcagaaacaggcacaaatcataactc<br>tttttctctaaatattctaggaaaagaagaatccttgaaagtctatgatttcttatacctaagggaatgtgtatcaggagagaggt<font color="green"><u>AACAGGAGACAGAT<br></u></font><font color="red">GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGTCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAATA<br>AATAAATA</font><font color="green"><u>AACAGGAGACAGAT</u></font>ctgagattaaagcagttttccttgaaatccattatcagcagatacgaaaataccaattttaagattgcctgtttcatt<br>ttggggccagtcctcctctttagtcaaactttgtacccctgggctgtatgttatgacagttgtcacacccaccactgatccaaacaaagaatgtctggaa<br>gagttcaatttaattctgtaattgcaacagaaagaaacagatgaaaaacatagaaaatgcttggttgccatttgccaatttaggcaactgctctgatata<br>atatctactgttcaagcaaatactaatcacctacatatctgagtactaacttaaatgtacttttaagtttctgataaaactcttatgagcacatgtcaca<br>ttcttctg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	91077266	91077584	1000413	0	-	22344; RIP_Alu_chr13_091_01	NA	NA	SINE	Alu	Yb8	aaacttcaatgagtccaagtagacaaactttattttatatttcaagtacctgtttcaagattcaacccaattagagatctccccagtgtgtcattttttc<br>aggccaaggacaagaatcaaataatcctttttattattattcaaacaccatctatagagatttagagtctgtactactgagaaatcttttcctattccta<br>atagatatgtctggagagtgacaattacaatctaaggtgtaaaagaaaaatttaagcaaattcttcctcaaagaaaaaagctcctcacactgtcttccac<br>aatggttgaactagtttacagtcccaccaacagtgtaaaagtgataccatttctcacatacatcatggaatactatgcagccat<font color="green"><u>AAAAAATGATGAGTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGCAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATGATGAGTTC</u></font>atgtcctttgtagggacatggatgaagctggaaaccatcattctgagcagactatcgcaaggaca<br>aaaaaccaaacaccgcatgttctcactcataggtaggaatttaacaatgagaacacctggacacaggaaggggaacatcacacatgagggcctgttgtgg<br>ggttgggggaatggggagggatagcattaggagatatacctaatgtaaatgacgagttaatgggtgcagcacaccaacgtgtcacatgtttacatatgta<br>acaaacctgcacgtagtgcacatgtaccctagaacttaaagtataataaatatatatataaacaaataaaaaaataaaataaaataagctcctcaatcac<br>tatgtctaaaaacattatt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:GPC5:NM:004466:2/8	
0	chr13	97492756	97493061	1000414	0	-	238705; RIP_Alu_chr13_097_01	NA	NA	SINE	Alu	Y	ttgcagtgagctgagatcaggtcaatgcactccagcctgggcgacagagtgagactctatttcaaaaatcaaaacaaacaaaagaagatgggcataaaca<br>ttttgatgagatccaatttaaaaaatgtttcttttatggtctgtgtttttgatgtcatgtcaaagagctctttgcctagccttaagtcctaaacacacct<br>tcacatgccttcttctaaaagtgttttatgtattccattaacattcatgacttttttttttgagacaaggtgtccttatgttgtctagtaggcaggccta<br>gaactcctgaactcaagggatcctcctgcctgagcatccccagtagctggtcaaagccaccatgcctgaccatggcattttaaaatta<font color="green"><u>ATTTTTGAATCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTACAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAATTT</font><font color="green"><u>ATTTTTGAATCC</u></font>actgtgaggtttgagtcaaacttcactttgtgcctacagatgttcaattttccagcatcatttgtgagatgactatctttcc<br>tctattgaattgatttgcacctttcctagaaattcattaggcctattgcactggtctgtttctaggttctccattctgttccattgatttatattctgtc<br>cctcttctgctgccatgctgtcttttttttttttttttgaaagagagtctcgctctgttgccctggctggagtacagtggctcgccatctcggctcattg<br>caacctccgtcccccgggttcaagcgattctcctgcctgagcctcctgagtagctgggattacaggcacgtgccaccgtgcctggctaatttttgtattt<br>ttagta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	102729654	102729959	1000415	0	+	pAlu13-102768190; 12423; RIP_Alu_chr13_102_03	NA	NA	SINE	Alu	Ya5	caaggagggaaatttaggtcatcatctgacagaaatatccttttgcaaagaaagttgttttagtggaaatgagactaagttttccaggttgcctgtctgc<br>actgatgaaattaccttcatcaaaacatgtcttttgggcttatgtcaggcgctcaaagagacttgtttgttgccatggttttgagctgtccccataaggc<br>tggaacagacactttctaggtattggagtaaggtggctctggggttgagaacagtgacaggtgagctaggagcagcattgtcagaactatgcttcctgta<br>cccctgctcttctcccctgttcccttcccaagccacgcttcacctaaacaaagcaggtgtgacgttagatggagagaacattactacatat<font color="green"><u>AGAAAACCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGAAAACCT</u></font>aatttcagtaaaccaggatttcaatcctcattctaccacctcccagtgacgtgactttaagaaatgtacttatgattctgaatat<br>cagtttactcaagtatattctccaaagtgggaataacctttgtgaatcactggaagatgtgaataaaatcatgtggtaagtactttgcatgatgttatca<br>tgataagtcctctgttaacattaatttcccttccctttttaggttcatctaagcctttttatcctcaaagaataggtaattaggacatgctatctttgat<br>gcaaacagtttagagccatgtgtaaactaaacaattaaggtgagcagagaccaggtaagcagacacaatgattaggaaacagtaagttttagccatcagc<br>caattg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	20605985	20606297	1000416	0	-	pAlu14-19526174; 55315; RIP_Alu_chr14_020_01	NA	NA	SINE	Alu	Yc1	ggggaccctcgagtcaccgacactctccaggttctctattacgagggcccgcgagctaggagagtgagattttgctaccccctggtgtccattccgtaaa<br>tactgcccaggggcgggttacaggggccagtgtttaaaaaaccttattcacctgtctcaaacctagctcatctattctcggtgttgagagtgtctgaacc<br>tttcctcaccaggccttccattccttaaactgcagcaaattgtttagggaacacttggtagggtccaaggttgtccattggactccaaggctcactactc<br>ttaggtagtggaatataaattaatctggctatgggggtccacaaactcctggaaaaagggagtggatcatttttttttttcatggag<font color="green"><u>AAAAAGGGGAGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAGGGGAGCC</u></font>actgaaagtttttgagctggtggggtaagggagtttggatagagaatcagggatgcagttaccccttctttcca<br>ggagttttaaaatctgtgctaaattacaatggtttattttaagtaagtaagtgacatgtggttgcagcagttaaataccactttctccaaagaatgcagg<br>ctcttacctaaaagtgtgtgtgtgtgtgtgtgtgtgtacgtgtgtacacaacagagtatgtgttgatacgtgtgtttttagtgggggaatatgaaagggt<br>aaagttataagggagaaattagaggctgggaatagaccagacttagaagccttctcattcacaaacagttcttaccatatttcacccatttaagactctt<br>tggggcttctcaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	25771459	25771758	1000417	0	+	14794; RIP_Alu_chr14_025_03	NA	NA	SINE	Alu	Ya5	ggggctagtccatcccatctaccatgtgaggacacagagagaaggggctgtctaagaaccaggaatccatcttccaccaaacaccaaatttgccagcacc<br>ttgatcttggaattgccagtctccaggattgtgaaaataaacttttgttgtttataaactacccagtatatgatattttgttagaatagaccaaatggag<br>taagacaccaaataaaataataaatttgttacaaataatttattttcaaattggtttttgtttatgcaggctaaacagtctaaaataagaaccatatggt<br>atttgttagtcctgagttgtttgtttttctttttgcctttacaaatttctaaatcttgttgtaagatcaaatgtatttataaataaatt<font color="green"><u>GAAAGAAAGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>GAAAGAAAGAA</u></font>aagaaaatagaaaaagtaagcaaccatttatagtatatatgttatatataaaataaaattgttataaaattaaatatactctctatttt<br>ggatttttttcttaatatacgaaaaccattttccttttccatgaaatatttcatcatgtcttttcaatagtttcctagtactatattatctgttaaaaaa<br>tgaaagcttgacttttttgaaaatttctttatcctttgaaactctgagcttttatctataaaatagaatttgtggggagagagaggcaactaaggctgag<br>ctatgatggagtgtctatgaaaaagagtatgttcttgtcagtgtaactaattctactgaggactagaggacagtcacaatgtgaaactatgttttacaac<br>	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr14	39662196	39662197	1000418	0	+	31370; RIP_Alu_chr14_039_01	NA	NA	SINE	Alu	Y	tgcatatgaaacctcttaaagagccaataagattaaaaatagatcaggattaaatagggtattaagatttctactaccagcataaaagtgtaattcattg<br>tactgtaggcagtgggaaagaggttttatggttaggctttccttttttgatctacacaagtcacactggacttagtgaagttttcacactacatataaag<br>cagctgaatttatatcttcagattctaaggttttctacatcctggataatgtttaccttttagtgtaatatacagccaccccacttaagaaactggtctt<br>attaacctttgaaaatctttaagccttaccctgtgtttaacatattcatgcttcactgagtaatgttctgtgattcattctcatcg<font color="green"><u>AGAAAGAAAGAAAC<br></u></font><font color="red">GGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTC<br>TCAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGAAAGAAAC</u></font>tttaaagctagctcaagttcacatttaccttcttagattatgccatgacagatttcagtgcttctgat<br>gccatctgtttggtaggaaagacatttcctttgagaggcaggtgaaagggcaacaagaaagtcagctagtagataatctttagtttagggcctgtactct<br>agtggtaaaaagtcattctagaatttaatgattactttgctttttctgtgcttcctttcatactgaccgagttgagcatatagctgggctaggcctgacc<br>aaaaaagaaaaaaaaaaaaccactttggcactttgcaagaaagacaagttgtctctgtttaaggctgcttttaccatgggaaacaatcagaataaaagat<br>atatagtagataagaata	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr14	41556086	41556386	1000419	0	+	20305; RIP_Alu_chr14_041_01	NA	NA	SINE	Alu	Ye2	aaaaatttaggctccacactgaacatcctcagggaaagatgaaagaataaaatgccgtagagattgagatgcacagctggataatgtagagatagatcat<br>ttaagtcaaacatgaggtgaaagctgggaaggcttttgcacctgtgcttgactggatgctgaatttcgaacaagttttctgaagggcagagatttttgtg<br>gaagcatgagttttccactacccaacatagaaaggataaaagaacttgcagttttaggagactagatttacttttttccccaatattatggcctgttctg<br>gaagtaagtgacagaaagacaaagatcgaacttatgcttacatgaacagctcagggccaaggaaaatgtagccaaatttagcacac<font color="green"><u>AAAAAGACCTGATC<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACAAGGTCAGGAGATCGAGACCATACTGGCTAACACGG<br>TGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCCTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAACCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAGACCTGATC</u></font>ttacgcaaatttaagcagaagagaagcaacctgaggaaaaacaacattagttaagcaaaacaaaataaacagtaatattgggtgg<br>ttagagtgaggtccctgacccacattcgcgtcttcatccataggggagagttagccattgggagttgatttgacatgattgtactccccgcgaagacatt<br>ggtaatcagaacactgagcttcaaattagggaagagttaggtgtagctctgcagaatcaggaagtaccactggtgtcggctattctccactgttatacac<br>agaaatagcaagaaccaagacatcccctcttattgttgtaaaaaatgtgaacgtcctctgagtgacagtgccgggaaactggcaaagtctccagaccggt<br>g	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr14	47896573	47896885	1000420	0	+	Yb8NBC466; Yb8AC818; 14503; RIP_Alu_chr14_047_01	TTGAGGCACTAGACTTACAGAATTG	CAGGAGCTGCTTTCACCTCT	SINE	Alu	Yb8	agaagtctgagatcagggttcctgtgtagtcaagttctggtgagggacctgttacaggtttgcagacagccacctttttgctgtgttctcacatggtgga<br>gagtgagctctggtatctctttctcttcctattagggcaagttctgttgagttctattgagtcagggctcaactcttttgacctcatttaaccttactca<br>tcaccttaaagaccctatctccaacacagtcaaatggagcatgacagcttcaacacacgaaatttagggagacacaattcaatctataagcactgtttcc<br>ccataatcatgtacatatgaatcttccctgtaccatcaggagctgctttcacctctcccttaattagattcctagattattaaaaat<font color="green"><u>AAAGTACACACCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAGTACACACCT</u></font>tttcaattctgtaagtctagtgcctcaaaaataacaaatgtttgtttaaccaaaaatttctggttggatgtaca<br>aaaatcatctcagctatcctgtaagaagagaaagttaactgcatgtgaaattaattgtaactgaagaaattgccaatatagaccatagagcaggccatgg<br>tctacaagagacatggtagttgaaagacctccagtaatctacgtatttcattaaaatatacttatgcccactggcctcaaacatctctgctatttctaaa<br>aatctcttcaatttgtcagaataaccaatgacaaaataatggagaactctgccataaaagagcaagagaaaaagtcacatagtccaaaatgaataacctt<br>ttaatttacctta	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	427	92	NA	intergenic
0	chr14	49028207	49028344	1000421	0	-	12195; RIP_Alu_chr14_049_01	NA	NA	SINE	Alu	Ya8	ccaaagagcctcttgttttcctggcccctccttaacaatttacccgatatcaatctactgctgataataaatgaaaaaggtaatgaaaaaggggagtttt<br>ttttttttaaacaaatgtcaaaaaaaccctttaagtatttctgacattaaaaaaaatgttgttggtccttccttatttgcatggagctttatgtggttca<br>gaaagcccatctgtaatccatttgagtggaagtcccatttgtcactgctgtcaggatggtaaaacacatttgaaacctttttgctttaaagaaaatagaa<br>ggcttttctgcactttacattgagctgaagactttgccactctcagggaaatgtcaattctgagaaagacttgtgcaaaatgagagt<font color="green"><u>AAAATAATTAGTC<br></u></font><font color="red">TAGTCCTTAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGG<br>GCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATAATTAGTC</u></font>ttgaaaagtgattttactttttgcttaaacacgttccattttccccaaa<br>gtccccaggttcctaaaacaacaagaagtcatgagagggtgagggttggggttgtcgtcgcaagcagtcttgacttcatttatccactcaatggagggat<br>cagcagcatgaacattacaaaatggcagagaatccacacagcacctccatttagcattggggtgtgttttatagccgcttttagaataaacattttgggc<br>caggcgtggtggcctgtaatccctgggatcacacctgtaatcccagcactgtgggaggccaaattgtgcagatcacctgagctcaggaatttgagaccag<br>cttggccaacatggtgaaaccccatctctactaaaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr14	67446766	67446909	1000422	0	+	7444; RIP_Alu_chr14_067_01	NA	NA	SINE	Alu	Y?	tcctcccatcttggccttccaaagtgttgggattacaggcatgagccaccacatgtggccaaaaaatactttttataaatacctcagttgcataatgttt<br>tctccattatcaacttgacaggcctttgtttaaggtttacggttataagtacttatttgtgtaaaatttaagatctatcaatatgtctaatttttcagaa<br>atttttttcttcaacattttagcctttggcccattttcaaattgtatgtaggccaaggcatacacagtggacattgtgcagctgcgtatacgaatatagc<br>caacattaagaggtcccttgcaataatgctgtttcagaaaggatgtttactgttcttttgaacatagttttcttgtttctgctttaacttat<font color="green"><u>AAATATTT<br></u></font><font color="red">CTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAG<br>ACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATATTT</u></font>aaataaaaataatgtttcactgaagaaattgtaaaagtgaactatatg<br>ttaaaaataatctaggaaactaaattactgctattccactttgcagtttgatattgctcattttttgactcgtaaagtcagtgtcgatgccttttaactt<br>tttttttaaaattttactggatttgtattttaccatatttgtgcagtgactttgattaggtaccaattgaattcagattaaaaagcataaacctacatct<br>gaagatagcctagtataatttatattgtgcatcgttctgattttgaaataataattctcctttacaacgttagggctgaataaaagatagaatccttatg<br>aaatagtgagcccaatgtcattttttttttttttgagtcagagt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:RAD51L1:NM:002877:7/11	
0	chr14	70507590	70507913	1000423	0	-	pAlu14-69427783; Yb8NBC9; 239173; RIP_Alu_chr14_070_01	GTCCCCACCAATCCCTATCT	TGCTCAAAGTCCCACAGCTA	SINE	Alu	Yb8	tcaaacctgacaggcatgctcttgctttagggctttgcccttgctgttccctctgcgtggagggggcccctcccctcagatatcctgagagctcactcct<br>ccttcttcaggtctttgctctcagagaagcccgccctcaactactctatttaaaattaaaatttccctagtccccaccaatccctatcttctgtctctac<br>ttactacagtatatgttgatcgctaccagtatgattccatattaatagtagagaagccacatgagggtggaactttttgtctttttgttcactgatttat<br>ttccagtacttaaaacagtgccaagagtactcgacaatatttgttaaatgttaaacatatggaaaaatgttgcatgataaaagcaagtttt<font color="green"><u>AAAACTATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGTCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTATA</u></font>taaagtagtatagcatagattttaaaaagcataattcaaaactagatttgaattataggactgtcac<br>tttgtagctgtgggactttgagcaagtttcttataatttctctctaagcaataacatgcttatctgtaaagtgagaataataacagtgccaacttcaaac<br>gtttatagtgaagattaactgggtaaatgcatataaaatgcttagaagaggacttaaaccaggggttgacaaactaagtcccatgaagccaaatccagcc<br>ctcaaacttgtttttataaaccaaattttaggatggcacagccatgcccactatttatgtatcgtttatgactcctttcactctacaatggcagagttga<br>gtagctgagtagcaagagagacca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	655	322	NA	intron:PCNX:NM:014982:5/36
0	chr14	78723691	78723778	1000424	0	+	2570; RIP_Alu_chr14_078_02	NA	NA	SINE	Alu	Y	tgtaccatgagcggagtcagagcccctcttgaaagcaggttggtaaatttccagaaccacttagcagttttcataggtggcaaggcattgtattgttatt<br>tttattattgttaggagctaacatttgtttccaggaactgggctaaatggttcaaattcattatctcatttaatctttacaatatttctgtgaggtagaa<br>agtattgttatctccattttagagatagcagttatagaagaggcatctggagctaaaacagattaaatgaccttttccctcaggttcagagtaagtgtca<br>tattgcaccccagaataattctgtgctcaccataatgatttacccttctaaaaggtaatataatgcaatttcagaaattaatga<font color="green"><u>AAAAATGTGTAAGCAT<br></u></font><font color="red">AGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGTGTAA<br>GCAT</u></font>aagaaaaaatagcgaatgtccttttctagcatcacactagattttacgggtgattacaggaagacccttttgagattttcagcaatggacttttct<br>tggatgagacggaagatgctctcagctggtgtgactaaattgtttgcgacttgaggacatgggtcatgccctctgtgtgtaccactcactatatcctcat<br>cacagttcctgcataaagcagagattcagaagggtcagtcgagaacatggatgacaacccaacactgtaacccagcagcttgtgtcttggtgtaacattg<br>gtaggttttgtttgcctttacatttttaccataagaggtcaactagagtttctatcttgttacaagttcattacacaggtatccctta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:NRXN3:NM:004796:12/17	
0	chr15	37307406	37307734	1000425	0	+	14146; pAlu15-37099151; RIP_Alu_chr15_037_02	NA	NA	SINE	Alu	Yb8	ataagagttttaagaatactgtgccagatagtaggggcagagaccaaatatatatttcttattatatcacaatatcacagatactaattatatgtagaaa<br>acttcatattaactccagaagttagaaacgtaacaacagtaagatctcaagaaaaatgaaagagacaataaagacaaaaccagaaattaaggaatgagaa<br>aataggaacaaggagagtggaaaaataaattcaggacatgaataataaatacgagtttgctcaagaaaaaaatcaaataattacacaaaagtaaaattgt<br>gaaagacagcataatcaaagacacagaggatatataaggaattactctactcacataaattgaagatacgggtgaaataatttttaaaa<font color="green"><u>TTTAATTTATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAT</font><font color="green"><u>TTTAATTTATC</u></font>aagaaagactatagaagatgtagaaaacctgaatataccacaattctccgttgataaatt<br>tcaggaagagaacagtggagaaggtggtaagaaaaatataattataagctattagttaatcagacaaaagaaaggcaattagaaactctaggaggaagaa<br>aaaaagaagctgcacttcaaggttacacaagtaaaatgaacaaaaagagaatttttaaaagttgaggcttgtaacattctcatttgtgtggcataggttt<br>acaacatggtattacattcccaaatctgcaggtttaattagctcattttgaacaatagtttgaaattaaaacattacaacttctatttattggctttcaa<br>ttttcaagatccatgtaagggaaagcaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	39805041	39805359	1000426	0	+	2365; pAlu15-39596787; RIP_Alu_chr15_039_01	NA	NA	SINE	Alu	Ya5	tatgggaatgggcagtttacttaaagaataaaaccagtagtgctgggcgtagtagctcatgcctgtaatcccagtgactcaggaggctgaggccgcagga<br>ttgcatgaggccaggagttcaaaacaggcctgggtaacatagtgagacctggtctctaaaaagaaaattttttttctttatattacctttaattaactct<br>taacaactaaacctttttttaaagacctaaaatttatttttaaagacctatgcaggcatggtggcatgtacctgtagacctagctacttgggagcctgag<br>gcaggaagatcactttagccaggaggctacagtgagccatgattgtgccactacttgggcaacagagtgagacttgtactcttaaaa<font color="green"><u>AAATAAATAAGTA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAATAAATAAATAAAT</font><font color="green"><u>AAATAAATAAGTA</u></font>aacccaggagcctcttaacctagatcttctttttaatttagttaagtaatcaatgcatattttccttt<br>gtgcacattttttgggggattatttattaacaagtaaaaatgcatatattggtctataacatgacattttgatgtaaattgtagaatggcatacagaact<br>tcttgatagtatgattttacctcagttgggtttcattgcgtctatattgatataagtgtttttactcctgtactgagttcaggctgtcttttgattacaa<br>tttgttattagaatgcagtagtgacagcttggtctctggagccagatagacagggtttgattctggttctgcctcttactggttggacatccctgcctct<br>cactggttggacatccctg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MGA:NM:001080541:9/24	
0	chr15	41447734	41448045	1000427	0	+	Ya5NBC241; 238740; RIP_Alu_chr15_041_01	GGTTCCAATAGAGAGCAACAGAA	ACCTTAAGCTTTCCCCCAGA	SINE	Alu	Ya5	gctattgtcttggatgataagatcagaattcaaaacaacctcaacaaattttaagtgaaatggtaacagaaaaaagcatacaacatggagatcaatagac<br>tacaaagaagaaaaacaagttctacaaaaatcaagtacaagaataatcaactaggtataaaggcattggggaaagctatcagagtcctggaagttaccag<br>gtgaacaaaaaaatataacaggttgggctatactgatacaagacattgcaagattctgaagtaaaattcttacttagcttctaacagactttcaggaaaa<br>taataaacataatttagttccccacaattaacatgatatttggagaacttaaaggttccaatagagagcaacagaaacttaggttt<font color="green"><u>AAAGAATGGATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAGAATGGATCTT</u></font>ctgggggaaagcttaaggtaacaaatatagtttaatttgaagatggaaaacaaccaaaaggaagatgtgccttc<br>aagtatagaaaagaatttttatctagaaaataatgacctatactatcatcattaccaagaggaaataaaataattccaagttccgataaaaactagggag<br>ccattctcttgtggacttatcaagaggtaatatgaataccagaggctaaactacatgtcaacaaccacatattctgcaatttccacttactcctgaaatc<br>cctttcccactcactattcccaaccctacttcccaacttggaatggcagtctatcttcccatatgaatctactcctcaccgctcctttgaaaaggtttga<br>gcttctcctttg	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID:11042148</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	392	66	NA	intron:ZSCAN29:NM:152455:2/5
0	chr15	43855273	43855607	1000428	0	-	pAlu15-43647033; 238357; RIP_Alu_chr15_043_01	NA	NA	SINE	Alu	Yb8	tcagattttcacagcaagcttgaaagcattttgaaggttatagtgcatccttaataagtagggagggacattctagaaatatgaaaaaaagacatgcttt<br>aaaaacaaggactgagcttccagtaatggccaaataaagattctaccagaataaacacccttacagacagctactgtaaaatatggacacattataagaa<br>gcagctacatggaggcacaagagggtgatggaaggcaggtagagtctagggaggagtccatgcaccagggaagacattacatggagtaggtactccatgc<br>tgctgcttctagcctgggggtaggttcagttagcttgcatggaacagcaggtacagtgaaaaataaacacattttttctggcctt<font color="green"><u>AGAAATCTGAGTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATCTGAGTACT</u></font>gagtccagggcaaccgcagtcactgaagaaaagggaaatttgggaggaaa<br>aacagccaggagggggatacccaaattctgcctgcccacatctctggctggctcctgaatcacacatgcatggagcagactcaaagcacctcagctagag<br>gtaaagaacctaaagagagtttggaactggttaaaaaccaaaaatagtttggagctcatatttaaccaggttaattgtgtgctaaaaggaaagaaacatg<br>actcatcaaaagaaattaacaaaatccagtatctacaacatgaaatttattgtgtacattacacaatcagaaagtactcaaaatataacaaatcaggaaa<br>agtgggagccctaacatgacagtcccagaggagct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	49685009	49685332	1000429	0	-	238258; RIP_Alu_chr15_049_01	NA	NA	SINE	Alu	Yb9	aagaacaaaactcccatctcacatccacacccccacacacacacatacaaaatctctataagtgtgttggtttaattctaggtctctaatgttatgtgga<br>ttaatcttcaagatttcagtttaaagtgttgggtagtttattggagtcccatcttttgtcagatggagcactttcatttttgttcctctagatccaagag<br>accatcaaaatgcagctcagttttaccctcactcttttagattagcaaatgctgttaggacaaattggcattcagtgctgagcacagccttatgttctcc<br>ttttctcttagattttggcccactaattcctcacagtattttttatttttttagctctttgagtgtttttacatctatgttcatt<font color="green"><u>AAGAATATTAATCTG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAATATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCGGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATATTAATCTG</u></font>tatgggctgggccgggtagctcacacctataatcccagcagtttggaaggccaaagcaggc<br>agatcacttgaagtcaggagttcgagaccagcctggccaacacggtgaaaccctgtctctactaaaaatacaaaaattagccaggcatggtggcacacgc<br>ctgtagtcccagccacttgggaggttgaggcactagaatcacttgaacccaagaggtagaggtggcagtgagctgagatgatgctactgcactctagcct<br>gagtgacagagtgagacgctgtttaaaaaaaatacatatatttatatgtttttttcccccgttgtactgtttttgtcgagttttggtatcatgctaagat<br>gttttttgtatatttcatgaagct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DMXL2:NM:015263:1/43	
0	chr15	62420247	62420556	1000430	0	-	10196; RIP_Alu_chr15_062_01	NA	NA	SINE	Alu	Yb8	ccaggagttcaagatcagcttgggcaacatagcaagactctgtctctataaaaaataaaaaaaaattagctgggtgtcatggcacgagctggtagtctca<br>gctactcaagagattgaggcaagaggattgcttgagcccaggagtttgaggctgcagtgagatctgatcatgccactacactccagcctgagtgacaggg<br>caagatgtctttgaaaccaaccaaccaaccaacagaagaaataaatgacagtttaataaatatttcaggccgggcactgtggctcacgcctgtattccca<br>gcactttgggaggccaaggcgggtggatcatgaggtcaggagattgagaccatcctggccaatgtagtgaaaccccggctctact<font color="green"><u>AAAAAGATAAAAATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATTGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTACCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAAGATAAAAATT</u></font>agctggacgtggtggtgtttttgagacagtgcctcactctattgcccaggttggagtgccgtggtgtgatcatgg<br>ctcactgcagtaccaactacccaggctttaagtgatcctcccacctcagcctcctaagtagctgagaccacaggcacacaccaccatgcctggctaattt<br>ttaaaaaactatctgtagagacaggattttgccatattgcccagtctggtcttgagctcctgggctcaagtgatcctctggcctcggccccccaaagtgc<br>tgggattacaggcatgagccaacatacatgaccttaaagtggtttcacagaagttctacctagcaacttcattagccctttgctgcaaggtaattaggct<br>gcccagaata	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CSNK1G1:NM:022048:1/12	
0	chr15	79179642	79179643	1000431	0	+	280; RIP_Alu_chr15_079_01	CACCTTCTCTGCCTGTCTGCATC	GACACTCTAAGGTATCTGTAAGGTC	SINE	Alu	Ya5	tagacctaaaggtaggtaaatcttcctctcctactatcttcctcctcacgtatatttccaaaggttttttttccctatatttatacaagtaattagcttc<br>cgtccatttgtttcatcacctataaaataggaatgatctttgcctcatagatgcatgagtattaaagtacataagataatacatgtacggcatttaaagc<br>agtttgcaaacactcaataagtgttataagaggagaaaatttccacttaaaacttcttccaccttctctgcctgtctgcatcccaggtttttggtatagt<br>ctgggacttttgacaaagtttaatgctcgttaccatactgatgtattttttttctccaagaattatttaacatctgcattattttgaa<font color="green"><u>GAAATAAGTATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>GAAATAAGTATT</u></font>tcttagttctaagtttaaattatttcagtgctgattatctgtcctactgtaatacagtcttctattatagagttctttattttga<br>cgtacagatcaactgcatagtatttttatggaaaggtacggcagaggcatattgagaccttacagataccttagagtgtctttctattgctttaaataat<br>gaacaatggatgacttcttggggtttgaaatcttgctttgcaaactttccccctcagaattttatgtagctgctggagtacactgaggctagctccattt<br>ttcttccattgcctacaattttctacatgcctagataataataggcatcttcctttatccttgaaataaaaaaattatctactttttatctcttaagaat<br>tct	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr15	99270605	99270899	1000432	0	+	5167; RIP_Alu_chr15_099_01	NA	NA	SINE	Alu	Yc2	ctagtttgtcatttgggagtttttaatggagtctctgctctacaaaaatagaatttagcattctgtttatggcttttatgttttgtgttttatttaggaa<br>agattataaaataattcacttattttcatgggttctggaactatttgttttaggaaatgacctaaaaatctcaatggcacctaccattcattttctgcct<br>aacacatagtaggggctctacatgattatctgtaattgttataattacaaggaggtgatggttttcctatttgatagttgatgaagttgaggctcaggga<br>aggcaaagaacttacctaagcaacatagttctaagccagtggttctccaacttgagtatgcatcagaatcacttggaggacttgtt<font color="green"><u>AAAATACAGATGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGCAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAT<br>ACAGATGTC</u></font>tgggccccaccatagagtttctgattcagtaagtttattagtcttttattgctcctgcaagaagttaccataacatcagtggcttaaataa<br>cataaatctattatcttatagttctgtaggataaaaatctgacacaggtctccctgagctaaaatcaagggcttcattcctttttggaggttctcaggag<br>agaatctacttccttgccttttccatcctctagaggctgctcgcattcctaggctggtggccccatcctccatcttcaaagccagcactgctgctctctg<br>aacctgtttctataatctcattttgctctgcctctcttcttctgccagttttggggacccttgtgattacactgggtctgcctggatgatccagg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ALDH1A3:NM:000693:12/13	
0	chr16	20686059	20686362	1000433	0	+	20638; RIP_Alu_chr16_020_01	NA	NA	SINE	Alu	Y	aaaaatgtttttagtgggcagaatagtgtgtattctgtgctacctgttgtgtaaaattggtggagaaataagaatctatactcataatttgcttgaatgc<br>acataaagaaaccctgaaaagataagtagaaataataatagtggtttcctgggagtgagagcaaagtgggcagctttgagactagaggtgggaggcagat<br>atttttttttccctctgtaccttttacagtttttttgagccatttgaagatattatgcgaaaaaaaattaaaaacagagagagacaagtagtgttgatta<br>cttaacttctttcagttgaaggaaacctgatgctaattctgttaagaggagagcagccaaaagcataggttgtgacttgccagc<font color="green"><u>AAAAAACAGGGACCGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAAACAGGGACCGG</u></font>tagttccctctgtacccaatccccaatgccaaacagaatgacattgttagacttaaggtcttaacctgcagggcaactgg<br>gattcagagtgattttagttctgttcttaagagcagccttttctcctaaagcctgccaagaaatttttgttaattcttcccaggaacataacagacaagg<br>cccctgctctggtagaacttacatcacagtgcaaagatcagcaaactgtagcccatgggtcaaatccagccctctgcctgtttttgtatagcctttgaac<br>caagaatggtttttaaattttttaatggttgaaaaaataactaaaagaggaacactaattcatgacacatgaaaattaaatgaaattctagtgtcagtac<br>cata	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ACSM3:NM:005622:1/14	
0	chr16	23436055	23436350	1000434	0	-	31594; RIP_Alu_chr16_023_01	NA	NA	SINE	Alu	Ya5	aaaataaataagtaaataaataaataaataggccaggcgcggtggctcatgcctgtaatcccagcattttgggaggccgaggcaggcagatcacgaggtt<br>aggaaatcgagaccatcctggctaacacagtgaaaccctgtctctactaaaaacacaaaaaattagctaggtgtggtggcatgcacctcaggggttctga<br>gggatgagtaggagtttcccaggtagatgggtgttggaaggctattccaaggagagggatgaaaaataaagcttcacaaagttgttcaggactggaccaa<br>gagtaggagtcaggggagaggtagaagtggctgctgagaaaccaggcagatgtgagatccaaataataaaacccagattcaat<font color="green"><u>AGAAAAAAATTAGCTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AGAA<br>AAAAATTAGCTGG</u></font>gcatggtggcatgtgcctatagtcccacctactagggaggctgaggcaggaggatcacttgagcccaggaagtcaaggctgcagtga<br>gctgtgattgcaccactgcactccagcctaggcaagagagcaataaatcttaaataagatttattatcgtacttagcaggaagttcattggtaaggtggg<br>ctgcagggttggttaattacacgtgtggtgacatcagtgaggacccagggtccttctctctctccaccctcctggccacagcatctgcagcagccacagt<br>tggctgcctgcagcagtcaggcctctgcacttcctccttcatgtcagctggggagagggtggctttctatggctgtctcccaacagcaaggaaact	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr16	47593590	47593708	1000435	0	+	pAlu16-48773173; 15362; RIP_Alu_chr16_047_01	NA	NA	SINE	Alu	Ya5/8	agtgcctgccctcatggagctcccagtctaggccagtaatgttcaatagaatgttctgtggtgatagaaatacttatctgtgatgtccaatatggtagcc<br>attagccacatgtggctactgaacacttgaattgtggtagtgacaggaagtgtattttcattttaaatagtcacacatgactaatggttactctattgga<br>tggtagaggtctagaggagaaacatgaaaatgtttagcacagagcctggcatacagtcagtattcaataagtgcatctttcctttccctccctccactat<br>gtggcacctggtaccatgtttgttaactcctctgctgctgttacatgttcttaaggatgagtaaggtcatctcaaacagactct<font color="green"><u>AGAAAGATAGGCCTCA<br></u></font><font color="red">CCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGATAGGCCTCA</u></font>gtgtggattatttatatgtgtcttccaggattttgcacacagtaagtgctctttaaatgcctatt<br>aaagagacaatatggtgtaagaaagggaacatgctttggcactaagaagaaataaatttatatcttggctccatcactcagccgctgcacaacctgaaca<br>agttactcaagctgtctgggtctcagctttctctctgttcaatggggtgatgatgggctactctgtgggggtagttgtgaaaacagatgaactcatgcat<br>gaaaagaacccagcatggatccttacacaaagctgctctccaaacaggagaaagccaaccagaagacaaatgatgatgcttctttggatgttcccagctt<br>cacagatgtgggccctgta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	60604378	60604695	1000436	0	+	Yb8NBC499; 238240; RIP_Alu_chr16_060_01	GGGGAAATCTCCACATCAAA	ACCCCCACAAATGCATACAC	SINE	Alu	Yb9	gttaagataattgaaaaatatattattttttctcattttattaagttttacattttaataaaagcatattaagaaaataaaatgcagaaaattatttttt<br>aaaactcataatccaaccacatatattggcggaaaaaagattgaatatattgatatatttccttacaggttctcctgtattgctttgcggtatagttact<br>aatctgaatcaatgtcagaaattaactcctcaattttttttaaggtgggttacctggatatcacatactcattagatataatcatgcatttgggattttt<br>ttatgattctgtgttgttttcaactggggaaatctccacatcaaaacagtgaatagtggttatagacgtgatttgcattctcttt<font color="green"><u>AAATTAACTACTTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATTAACTACTTAA</u></font>atcaagagcattggcaatgtgtatgcatttgtgggggtgaaggtaattgaaaaaatagcggtagaat<br>gactgaaagtattgaatatgggtgtatgggtgagcaggataatgggcactaatggctcattatttttgtaaatttgaatacatacatctatattcatggt<br>ttgaagatagatacaaaaatgtttaaatgtattttttcatgttcacacacatattttaacagatatatgccaggcactctgactgtatcacacatatatt<br>ttaataattattttctatacacattttatatcttgcctttgatatttattaagttgcaaccacactcttatgttataaatcttaattttttaatgacttt<br>atgctattctgtcacgtg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	58	446	113	NA	intron:CDH8:NM:001796:2/12
0	chr16	64039690	64039691	1000437	0	+	9449; RIP_Alu_chr16_064_01	NA	NA	SINE	Alu	Yc1	ggataacccaagtcctcaaggctctctcttctctaggaaattaggaaggacatacacatgcatgtagtaaaggcagagcatcccagcatagagtccagag<br>gagctccgaggagaatggaagcttgtaggggcataggggagctgcttcatattttcaagactctcactgcaatagggaacttaggtaaccaggcttgttc<br>tcccacaccaaagagaagactggaaactcatggaagtggtgacattcccctaaggcacacattccaggctgagcatttaaatcagttgatacttcttctg<br>tatcttatttaagactttagtacatgagctcttaggagaccaaaagttattttcagtatcagaaactggtgagtttctaacaa<font color="green"><u>AAAAAAATTGTTTTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTTTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAAAATTGTTTTCTG</u></font>aaaatagggcttacttctggaaggcaggataatgcacagaacacaccacccctttctccaagatgcccaccatcttaattcaaaa<br>aactgaatttgtcaccttgcatggaaaaaggaactttgcatatgcaattaagggccttgacatgaataaattatcctgttggacccaatctggttacatg<br>ggttcttaaaagtggaagatgtttcctggttgtggtcagaaggaaatgtgaccatggaagaagggtcagagggatgcaatgttgctgactttgaagatcg<br>gaaaaaaaatgaactgtgagccaaaaaatgttagcagcccctagaaacaggaaaaaacaaggacatagattctccccaaatgcctccagaaggaatgc	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:LOC283867:NR:027755:2/9	
0	chr16	65380707	65381028	1000438	0	+	Yc1NBC35; 5511; RIP_Alu_chr16_065_01	CCCATTCTCCATGCCGTGAT	TGCAAGGCATTGGGGATACA	SINE	Alu	Yc1	caaacatcatgttctcacttatttgtgggatctagaaatcaaaacaattgaactcatggagatagatgattaccagaggctgggaagggtagtggaaagt<br>ggtgggtatggtaccaaaaaaaaaaaaaaaaaaaaagaaagaatgactaagacttactatttgatagcataacaaaataaccataatcaataataattta<br>attgtacactttaaaataactaaagagtataattggattgtttgtgtaacataatgaataaatccttcagtggatggaaaccccattctccatgccgtga<br>ttatgcactgcatgtctgtatcaaaacatctcatgtaccctataaatatatacacctattatatagccacaaaaattaaaaataaatt<font color="green"><u>AAAAAAAAATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAATTC</u></font>agggactatatcttacttatccctgtatccccaatgccttgcacaaagattggttcctaaaaggtg<br>attttttttttttttttttgagacagggtcttactctgtggtctgtcacccaggttagagtgcagtggcataatctcggcccactgccacctccacctcc<br>caggctcaagcaatctcccacctcggcctcccaagtagctgggaccacaggtgcacactaccatgcctggctgattatttgtatttttggtagagatggg<br>gtatcaccatgttgtccaggctggtctcaaactcctgaggtcaagtgatccacctgcctcagcctcccaaagtgctgggattataggcgtgagccaccac<br>gcctggctgatgaagaaatatt	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	481	162	NA	intron:CCDC79:NM:001136505:5/19
0	chr16	65811178	65811482	1000439	0	-	18088; RIP_Alu_chr16_065_02	NA	NA	SINE	Alu	Sp	caggagagcatttaaaggattgaatgaggccgggcgtggtggctcacgcctatagtcccagctactcaggagtctgagacaggagaatcacttgaaccag<br>agaggtggaggttgcagtgattcgagatctagccgctgtactccagcctgggcgacaaagcgagactcagtctcaaaaaaaaatacataaataaaggatt<br>gaatggatgattaacaatgtcagatcccacaaaaagcccagcaaaatgaagaacaaatattgtccatgagatatgttatccaaggaggccaccaatggct<br>tcagtgatatttggcatctggaaaaataagccaggtggattgaggagtgaatgagagaagtaggaagtgtagagcgtgacctcgctggc<font color="green"><u>AAGAAATTTCT<br></u></font><font color="red">TGGCCGGGCGTAGTGGCTCACACCTGTAATCCCAGCGCTTTGGGAGGCCGAGGTGGGCGGATCATCTAAGGTTGGGAGTTTGAGACCAGCCTGACCAGCA<br>TGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCGCATGCCTGTAATCCCAACTACTCGGGAGGCTGAGGCAGGAGAATCGC<br>TAGAACCCAGGAGGCGGAGGTTGCAGTGAGCCCAGATCGTGCCATTGCACTCCAGCCTGGGCTGGAGCAAAACTCCATCTCAAAAAAAAAAAAAAACAAA<br>AAAAA</font><font color="green"><u>AAGAAATTTCT</u></font>ctacagaaagaaggaaataaatagggcaagtcaggcacagtggctcatgcctgtaatcctagaactttgggaggccgagacgag<br>tggatcacctgaggtcaggagtttgagaccagcctggccaacacggcgaaaccccctctactaaaatacaaaaattagccaggcatggtggtgggttcct<br>ataatcccagctactctggaggctgaggcaggagaatcacttgaacccaggggtggaggttgcagtgaaccgagattgctctacttcactccagcctggg<br>caacagagagagactccgtctcaaaaaaaaaaaaaaaagagagagagagagagaaagaaatagggcagaaatgagaagttgagatgggtttgacaaagac<br>aaagg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:LRRC29:NM:012163:2/7	
0	chr16	69721879	69722191	1000440	0	-	13768; RIP_Alu_chr16_069_01	NA	NA	SINE	Alu	Yb8	gcaccctgaacacatatgttatttaaaaagagttatttgacaatactgacaggagttggaactgggacaggaattcagtgatcctaggctcccactcagc<br>acttatgttgctaaataatttgtctctcacccctggtaataccagtacaatgatgggaatatggtcgtatgtcctgggaggagataaaattcagtctgca<br>aagttcaggagaaatgtgaacatagctctggtgggggcaatgagtggattggggaaagctgctgttctctcttatcacgatggatattaaaagctagaaa<br>aagagagaaaaggaggtgccttaaggcatagcttgagcattttgtaagctgacagcttggcgattgcctatggttgacagggggag<font color="green"><u>AAAACCGGTATATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAACCGGTATATA</u></font>tggagttgccagctttgtcccaggaactgcactagagccttgattacatttaaccctcaacacatctttctga<br>tggagcagctcctgtggtctctagaaggagaaggcactgaggcttagaggaatcagggaactgccaaagtcacagagctagtaaacagatcacagaatta<br>gtatgcaaacctagtccctgccggccccaggttctatgctccaggtaactaacagctaagaaagaattaaagctaagcaaatttaaaaggaacaaaattg<br>tccttgccatgtgaggggcagaatagatgttaaatatttaaaaagcagcctggaaaacaggattacctgaaagaaaatatttgtccagatatacataagg<br>gctcaggagtaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:HYDIN:NM:032821:8/86	
0	chr16	85371728	85371729	1000441	0	+	12621; RIP_Alu_chr16_085_01	NA	NA	SINE	Alu	Yg6	cgttactatcccatttcacagatgagaaaactaaggcccagggaggtaaataacttgctcagggtcttcaagtaggaagcagcagagccgagattccagc<br>cccaagctggcactcttcagcactgcacagtccgccctctctgcactctggccagcgtcagcatcacctccagggacagtgcatgcaccaggaaggacac<br>agctttggaaccatctgcgtgaaaatgcgaatgtttaggtttgcattgcaaaccccactgcaaatcagctgtgactttggacaaagcccatcatttctct<br>aaagccccaacttctacggattgcatccgccttcccttcttcccgacccccacccccagtaattcctgctccaccttcaaaccccc<font color="green"><u>GAAAGGGAGTTTGA<br></u></font><font color="red">GGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATG<br>GTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTG<br>CACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCNNAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAAAGGGAGTTTGA</u></font>aaaggctgggctcacgtctgtaat<br>cccagcactttcagaggccaaggagggtggatcacttgaggtcaggagttcaagaccagcctagccaatatggggacaccccatctctactaaaaataca<br>aaaattagctgtatatggtgacgtgtgcctgtaattccagttactctggaggctgaggcaagagaatttcttgaacccgggaagcggaggttgcagtgag<br>ctgagattgctccattgcactccagcctaggcatcacagtgagactccgtctctaaacaaataaataaatacaaacaactccctttcaagattagctctc<br>tgcatttctggtcatcagttattcctactctaataggtgttctggttatctcttggtgtata	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr17	13645286	13645574	1000442	0	-	79694; RIP_Alu_chr17_013_02	CTGCTCTCAACCATTTTTATCCTCTAC	CATGAACTTGAGTGTTGATTCAGGC	SINE	Alu	Y	agagctgacttgaacccaaattttctggtgtacattatgaactgaattctgattcagttcaacatgcattgaccccactgtatactaagctctagaaata<br>aaatatgagtaagtttcagatctttaaatgcagcctatgagaaaaaacaggtactttctataataaattgaaccatatgaccaattgctgtttttgtggg<br>ccaaaaatgtcgaatattggttatttcatttgatttaatcaaataatatgtaagtactatgatagcggtatattgataagttactttgttgttttcctta<br>tatctggaatttctgctgctctcaaccatttttatcctctactttctgaagcagttggccttgacagaggtggctaaatgtcta<font color="green"><u>AAGAATACATATATGC<br></u></font><font color="red">AAGAATACATATATGCTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAA<br>AATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTG<br>CAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATACATA<br>TATGC</u></font>acgctggatgactgacgaccctagcaatccacacagacttctttcttgcctgaatcaacactcaagttcatgtctaatacagcatttcttcttgg<br>cctgtaaatacagggaatcaatggctaatgagcaacttcatacaggatctctgaggttgtacataataagttggactaccccagacctaaggtacatggt<br>atttcgagacgtcaaggactgcagagttctgatggcttaaagagttaggaaaaaccactgatttgccagccaagaggtcatctgtgacctcaagatctgc<br>agcaatggtgtaagactgataactggcagcaaaataaaacagcagtacatgaaaaagggtggctgtgtaccaagcattgtgtcaaaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr17	27460865	27461168	1000443	0	+	9918; RIP_Alu_chr17_027_01	NA	NA	SINE	Alu	Ye5	aaaatacaaaaattagctgggcatggtggtgcatgcctgtagtcccagttacttgggaagctgagatgggtggattgcttgagcccacgagattgagaat<br>gtagtgatccgtgatcatgccactgcataccagcagcatgggcaacagagttagatcctgtctcaaaaaaaaaaaaagttacactgcagaaattagaaaa<br>cacaacaataaaataaaaaacaaaacaactagccggttgttatagatatttgggtttagtaatgaatttcctgtgacagatagcatcatacgtagaatcc<br>aaacgtgctatcatctcaaactttgatgtaagtgaaggacctatggtaaactgaaagatacataacaatttgaaaaaatgttttat<font color="green"><u>AAAATGCGAGGGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAATGCGAGGGAA</u></font>aagtagtttgaaacaaataatttggtttatatgtgatttttagatagttatgtataactatgttaataatattgtatatagt<br>atatctattcatctgtatcttcaatgtttatatactgaagttggtaaaaactttttttacaacaaaattagtcacttttatttaaaagaaacattacaaa<br>taagtgtgcaaaattaaacatcatgattaaatacacataaaaggaacatgcatactttacatcaaaatccacatacagagttagttgattacatgacagt<br>aacagtaaaggaactgaaggaactggcaaaaccgagaactcgctgctatgcagattttatatgtttgcaatctgaaatcaaaaccataaaatagggtttc<br>ttta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr17	43972221	43972222	1000444	0	+	12784; RIP_Alu_chr17_043_01	NA	NA	SINE	Alu	Sq	acagaccactcacaattggtcctgacccaagaggaaccctgccccaatcaggatggaataagtgagtgcggccacttggagctgccctctaatctgccac<br>caccactggggtctgctgccctatctgggaaccaccccctcttccccttactcctccatggccaactgggaaaactcaagctaaaaaggatgacccaaga<br>gatgaaagaaggaaaagaagttaattcggaacacagggatcctgaattgcaatcctttatgaatcccaaattgccaggcattcccttgaatctgaattgg<br>gtagggaaattgaagatgggagtcacttccttctgcaaattcattgcctctttgtgctgccgtggtatcatcagagacggtgagtttcataaatttggaa<br><font color="green"><u></u></font><font color="red">CGGATCACTTGAGGTCAGGAGTTCGAGGCCAGCCTGGCCAACATGGTGAAACCTCATCTTTACTAAAAATATAAAAATTAGCCAGGCGTGGTGGCAGGTA<br>CCTGAGGTCCCAGCTACTTGGGAGGCTGAGACAGGAGAATCACTTGAACCCAGAAGGTGGAGGTTG</font><font color="green"><u></u></font>agaagacagccagcaacgcttttgtgtttcctgt<br>aaaaagagtttcaactcctctccaataatcagccaaagacaacacctggactaagacctctcacccctaggatatccaaagtacctgaatctaaacaggt<br>acattgagcctttggttggctcaccactactttggcaggaaggaatcaggactgatgcaggcccaggcaggaacaaagattccctgccatttgagctact<br>ggtttgggttgggagaattggaaggcaggggccaggtaaagtgagtcaaaaattctgaagcatggaggaaggcagaaagcaaggtggcactgtgatctag<br>cagtacttctcaaacttttaagtgtacataaatcacttggggagctgctaaactgcaaattctgat	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr17	67363750	67364061	1000445	0	+	52865; RIP_Alu_chr17_067_01	NA	NA	SINE	Alu	Yb8	tctttaaggtcccctggctgaactttaccatggcccagcactgaaagagctttaccttctggaaacttccatgaaaataagccacttccctcattagcat<br>aattttctaaatatgacaaagcatctcattgaaaacaaaataaaacaaaagacaaagagtattcatctttttcaagtacaattgccgcttctgagtggct<br>tagtagaagtgttaaaatagcttccatttaatagtttataataacaatagagactaaaatttattcacgtcccatgtttaaggaaatggtaaatattatt<br>tattcattaactcaatcacctcaaaaaccaccctaaactgaggccatgagaagttggctaacttgttcatgtttaccccactgtt<font color="green"><u>AAGAGTCAGAATGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAGTCAGAATGTG</u></font>aacccagataacctgaatccactacctacaatttaaaatcactctgctatatgaacattgtcactccatatgt<br>gcaaacatttcaaaagggaaatattcttatcacttgtaggtggggaatttggagcatgaagatattaactaactcatgcaagttcagagagctcttaaat<br>tagtgaagctgcaagtccatgccagatctgtcagactcaatagcctgaatacagctactaaaaccctacagaggctttgcaagagccactactgcaaggc<br>cttgggtgatggttagctaaaaataagtggtagtggttatcaattctagtatcatttatgttcttctcttagtcctctttaggagaatttatgagtccta<br>taataacattgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr17	70131814	70131815	1000446	0	+	238963; RIP_Alu_chr17_070_01	NA	NA	SINE	Alu	Yg6	atatgtaacggagcctgggtcatccactttctacttgtccaagtttcctttgtgttctcactcatctatttcctcttttgccttttaaagaatgcttcct<br>aattttaagccttacttagcagaagagaaagggtggcaagagacgtttctgagaatggaccaagcacaaacaggaaaatctgttggccttcatttaatgt<br>gaacgtaatgtttgagtcaccccctgagatttcatgactcggaatttcatgaaagtcagtcccagtttacgaaacctctccaacagagaaaactctgttc<br>cctgcctctttcactcttcttcctatctgggattacttcatcgatctaaggagcttcccttctctatggctgcctacttttgaatcata<font color="green"><u>AAAACACCCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>CACCCTC</u></font>tgtggtgatcactccccatgtctttctcaaccgttatctccatgcggatgacttcacacctcttcctctaacccaatatcccaatatctctcc<br>tgggctccagatcctactttctaacttcctatagggaagctccacctggttatacactgttaacctagttcagtatatgggtcatggtcaacagcataga<br>ttctgaagtcacacaaactcaaatctcatctccatcatttattaatcatctgaccttgggcatgttgccaaatcactctcctcctcagtctcctcatctg<br>taaaatagagtactcatgacaattctttctcaaagggttgccacaggaaataaatgagttaatgtaagtaaagtgcttgatacagtgcctggaaca	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	promoter:CD300E:NM:181449	
0	chr17	70551895	70552194	1000447	0	-	238400; RIP_Alu_chr17_070_02	NA	NA	SINE	Alu	Yb8	acaggctgtcctgagaaagaaaggaaggacaggacaggtgtttgacaactttcttgaagatcctgagaaagactgcttccgcctcccttgcattccactc<br>caagcttatagagatttttgactttgcagtcttttaatatctgaccctgatcttacttaaagaggactattttcctatattctgactttttttttaagtg<br>gctgtagtcgttttctgtatttttctcacattttcacatgtgttgaatacctcttaaaatgcaggccgggcgcggtggctcatgcctgtaattccagcac<br>tttgcaaggctgaggtgggtggatcacctgaggtctggagtttcagcccatcctggccaacgtggagaaaccctgtctctact<font color="green"><u>AAAAATACAAAAATTAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGTTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br></font><font color="green"><u>AAAAATACAAAAATTAG</u></font>ctgggtgtggtggtgggtgcctgtaatcccagctactccggaggctgaggcaggagaatcgcttgagcctgggaggtggaggt<br>tgcagtgagccaagatgatgccactgcactccagcccgggggacagagtgaaactccatctcaaaaaaaaaaaaaaaaaaagtgcacaacgtgtgctggt<br>gctgctagggtataatccgatgtgaataagaaggtgcaggtgtattaccaatctagttggaaggggatagcccttttaagtttgtaaaactctggagcaa<br>gttgctgtgcacaatttcatgtgacacttttagcagccctctggggcaagcaggactgataatgcccattgtacacataagtaaattttagcctagagag<br>	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ATP5H:NM:006356:1/6	
0	chr17	72499126	72499434	1000448	0	-	2265; RIP_Alu_chr17_072_01	NA	NA	SINE	Alu	Ye5	gggcctgaacccttgcttggtcatatgtgcaaaatgtcttgtgcagcaaaggtgcaacgaatgggggcgaaaacaagaagcaatgccttgagcagaagca<br>gctctgatggccagggcgtgaactagggctccagggccacgctgtctccacatttccaatcctcataggacctgctcctggctaagggcaagaacagact<br>tgggagaaggcagggagctgccccatgatgggtcccttcctggccaccccagagccgagccggagagttagaccaaccagctgtgtatagccagccctgc<br>ctgccttctccctgcccacctccactgacgcagggctgtggttacagaatgcaaaaagcccttgtattcctctgttctcacattgctatt<font color="green"><u>AAAAAACGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAACAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAAACGCC</u></font>ttgagactgggtaattcataaagaaaggaggtttaattggctcacggttctgcaggctgtacatgaagcatggcgctggcc<br>tctgctcggcttctggagaggcctcaggaaacaatcatggtggaaggcgaaggaggagtcgacgcctcacatagggaaagcaggagctgggccaggaagg<br>tgctacacacttttattattatttatttatttattttgagatagagtcttgctctgtcgcccaggctggagtgcaatggctcgatctctgctcactgcaa<br>cctctgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcgtgtgccaccaagcctggctaattttttatattttt<br>agtagagac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr17	73499894	73500192	1000449	0	+	238600; RIP_Alu_chr17_073_01	NA	NA	SINE	Alu	Yg6	cagtgaagaatatatgctctttagggatacagcgtggtatggatgcagcgtatgcttgaaactcagtccgacctcagttgaatgacgacagctctgtggc<br>tctctcacttactgtctgtgtctgtacgcagaggtcctctgagcttcatcctctgatcctctccttgaagatgcaggtgatacctgtctcaacaagatcg<br>atttgaggagcgaatgaagtcatctatttgaaagaccttccgagcccagtgctgagtaaatgacagctcttgctaccattagtttttccaaagactgtca<br>cttcacactgtctgctgccctagtatctttgcagttggaactcggtatttatggaggattgtttgattttctaagttttatctt<font color="green"><u>AAGATTAAGCAAAACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGATTAAGCAAAACC</u></font>actgggaacgttcacacttggactgtgttgccttggccccccagataattgctgactttttgcaaattccttgagttttcccgtc<br>atgctttttggctgtcaagaggctgcagaagatgatttaataaagcctaccctggcacacacatgctagcgcaaaaaagaagctgtctagtgcatgacta<br>cgtcgcctgtgtgaggtacccactaaaataacttacttttagacctgaatgctagggaaactttttcttcccttgtagaacaggtgggtgttcttatggt<br>tcatgagaatccgtaaaggacagagagaggaattgaatcaaatagtaaaataacgtggcaaattttaggttacctctgagtacgtgttaatccattagt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr18	827119	827419	1000450	0	-	19444; RIP_Alu_chr18_000_01	NA	NA	SINE	Alu	Yb8	ccattttacaaatgagaatcagaagaacagagatcaaaggactgagaatgtgagcctaggtcatctggctgtaaaacctatgttcttggtcaccagtgcc<br>atgtggcctctggtgactgtgcctgaagtgccacttagaaaatagaagctctctagttctagatccctgaggaatcgccacactgacttccacaatggtt<br>gaactagtttacagtcccaccaacagtgtaaaagtgttccagccatcccattactgggtatatacccaaaggactataaatcatgctgttataaagacac<br>atgcacacgtatgtttattgcggcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggatt<font color="green"><u>AAGAAAATGTGGCAC<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAAAATGTGGCAC</u></font>atatacaccgtggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacgtggatgaaattggaaaccatc<br>attctcagtaaactatcgcaagaacaaaaaaccaaacaccgcatattctcactcataggtgggaattgaataatgagatcacatggacacaggaagggga<br>atatcacactctggggactgtggtggggtcgggggaggggggagggatagcattgggagatatacctaatgctagatgacacgttagtgggtgcagcgca<br>ccagcatggcacatgtatacatatgtaactaacctgcacaatgtgcacatgtaccctaaaacttagagtacaataaaaaaaaaaaagaaaatagaagctc<br>t	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr18	9375405	9375715	1000451	0	+	pAlu18-9375306; 7480; RIP_Alu_chr18_009_01	NA	NA	SINE	Alu	Yb8	gggggttatggtgagagtatgagtgacctttccggctaaaccccaaagaggctccagttgcagctttatggagtgtgggtgtgagaaatgaatttgaaaa<br>tagcgagattatttgaagatctgtctgtagaacagctgtatgatttgataaccaattccctcctccattcgtcagaaaaagttccaagtaattaagaagt<br>ttctctaggaaaaagaaattggagaatttctttctagagaaattgaagggaactagctgaaaagaagtagggccactgatgtgttattggtacccaggca<br>aggcctcctcattcaggcattgtagggagggaaggtgtctccagcctaatgactagatgcgaaagaaaaatagaataagtgtagctt<font color="green"><u>AAAAGAAAGAACG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAGAAAGAACG</u></font>aagtaaaaagcagaccaaggaggaaatatttaggacataaaagaaatcttttaaaaactgattgttatcttttaga<br>aaaagttaacaaagtatcatgtctgtattatgaaaaacaatcagaataagaaagcttttgcaaatttaaaattcaaatggggccgggcatggtggctcac<br>acctgtaatcccagcactttgggaggccaaggcggatggatcacctgaggtcaggagttcgagaccagcctggccaatatggcgaaaccccaactctact<br>aaaaatacaaaaattagctaggcgtggtggcgcatgcctgtagtcccagatactcaggagactaagacaggagaatcgcttgatcccgggaggcggaggt<br>tgcagtgagcc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TWSG1:NM:020648:3/5	
0	chr18	12841197	12841511	1000452	0	+	pAlu18-12841099; 3347; Yb7AD188; RIP_Alu_chr18_012_01	TTTTGGGGAGAAATTGACAAA	TGTGCATTTTCTAATTGCTGGA	SINE	Alu	Yb8	ggcacaatcttggctcaccgcaacctctgcctcccggattcaagcaattctcctgcctcagcctcctgagtagctgagattacaggcatgcaccactatg<br>cctggctaatctttgtatttttagtagagacgaggtttctccatgttggtcaggctggtctcaaactcccgacctcaggtgatccacccacctaggcctc<br>ccaaagtgctgggattacaggcgtgagccacagcgcccagccaggcattcttaaattttaagatttacttgacagcctagtcaatggtccattttttaca<br>aatagaccatgtcagtcctagaaaaatgtgcattttctaattgctggatatagggttctatgtatttttcttcttatattaaggtt<font color="green"><u>AATAATATTATATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAGAAAAAAG</font><font color="green"><u>AATAATATTATATA</u></font>aatctatttctttacaaatatcttgtcttattaagaagcccatgaacatggatttgtcaatttctccccaa<br>aattctattcatttttgcttaatacatcttggggctactttattagctgcatacaaatctcagagctgatactgacatctgcattcaaagtagttatgcc<br>atttgctaagatcatgcagggagcgtgccgaaagcatagaagttttcccttccttcttccccctctagtaactcatttaaaaagtatgtttatttgagaa<br>tctttttgttttgtagagcaacaaaccatggactatgtaacctgacactaccagaatcatgagtctctgtgttaatttcctttaaaatctgactgtttca<br>catggatgaaccttg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intron:PTPN2:NM:080423:2/9
0	chr18	24125818	24125819	1000453	0	+	2606; RIP_Alu_chr18_024_01	NA	NA	SINE	Alu	Ya5	gcaaagtcagcaacaatcaggagaaatgctctttctttaactgtaaggagtacataagcttgaaattactgggacctgtcaaatggagaaagtccgtctg<br>taaagtaaaacaatacaatcaaagaagagctaggagacaaaggaatagctgatcactgataaaatagttaaatcctcaatttagccatagttgttctatc<br>atttaatttgtaaatcaataaatgcatgttattttgtttaaaatagtgggaattcttttgttatgtaaaaattagagaactaaaatagaaaagaaacaca<br>aatttaaaaagaaaaataataaggacacttgcaagagaaataaaaaataaagtcatttctctttgtgtgtaggttgataaaaataacag<font color="green"><u>AATCACATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAT<br>CACATTTT</u></font>taatcttcaaattttctgttcagctaaatatagttaagaatacaataattataactgcagccaacatacaaatctgttttttgagaaagaag<br>acaagacttatattaagtaattgaagagtgttctggaaatatcctcaatgttctcaaatttttaacagcaagggcctaagacatgaggaagaccatgtgc<br>aagattgggactgcaactcctggcagataagtctttccctgctaatattcttatgctatagtagaagtcctggaagacacaactcatttctcattttctc<br>tttatgtaacttttgactttttttagtctttaacatcagcattaattatgttctagtataaattattgactccaaactggggcaaggaggattaaag	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr18	29787208	29787209	1000454	0	+	3640; RIP_Alu_chr18_029_01	NA	NA	SINE	Alu	Y	accgggaggtggaggttgcggtgagctgaggtcatgccattgcactccagcctgggcaacaagagtgaaactccgtctcaaaaaaacaaaatgttctaac<br>atgacagagtttcacattatcaaagccaaaattgaggaagactactctaggagcaaaggcagatttatcataaagtcaataaaagtgaggcataggatgc<br>ctcaattggatgagcctcttaagtgctggagttcctggatgttgtaagcattctaggtaggaagggaaagccactttaaaatctggaagcatttatatgt<br>aagtgtgtctgaaaattgtctaacgagatgttagaagaaaagcgttttaatcttcaagatttcagtggtttctaaatttcttt<font color="green"><u>AAAAATATCCTACACAA<br></u></font><font color="red">ACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTA<br>GCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGAGGAGCTTGCAGTGAGCCGAGAT<br>CGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATATCCTACACAA</u></font>cattttttctacctaa<br>ttttttgctcataattgtgtattacttttcttttcaaaaagatctcaagtcatataatcttcaggttttacaaaccctatttctgcctctgcctaggcat<br>aatgtgtgtgaagagggtaagaggaaagtagggagttgagttaggattatgcaagagtacaggtatgaggtatgaaagactagaactaaaataagaacac<br>ataaaattggaaactgtaagatttatttgggaaacagaataaaggaggaataagcagaattcattaagtggtaggatacaagacacaaaaatagtcaaat<br>ctcattctacatttttgagcaatggtaaaaatgacaatatggtgctattaacagcaggcaagtcaag	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:NOL4:NM:003787:8/11	
0	chr18	39707441	39707753	1000455	0	+	3902; pAlu18-41341334; RIP_Alu_chr18_039_01	NA	NA	SINE	Alu	Ya5	gcacaccagcatggcacatgtatacatatgtaactaacctgcacattatgcacatgtaccctaaaacttaaagtataataataataaaataaaataaaat<br>aaaagttagcattaaaaaaagcaaaaacaaaaacaacaaaaaaagaaaagttagcataaaaaaaaaacaaaaacaaacaaaaaaaagaatacctacattg<br>ataatatgcaagcggttattgaaacacaattgtattgatgacggtcttataaaagatcagaagaatatataaaactataattactaaaactaattggtct<br>ggcacatataaattaaaaaaatttttagtttagaaagcatagtaataattttgtatattataaacttacattagctaattaaatt<font color="green"><u>AAAAAATGATGGATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGCCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAATGATGGATC</u></font>ggccgggcacagtagctcatgcctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtcag<br>gagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaatacaaaaaattagccgggcgtggtggcgggtgcctgtagtcccagctac<br>tcaggaggctgaggcaggagaatggtgtgaacctgggaggcggagcttgcagtgagccgagatcacgccactgcactccaaaaaaaaaaaaaaaagatgg<br>atcattaaaaaataaatattggtaaatattgggtcaattgttatcatttaaagttaaaaaatatctttaaagccaaatcaaaaaaacctagaaaacatta<br>tattatctcaatc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	42592432	42592753	1000456	0	-	31575; Yb8AC1796; RIP_Alu_chr18_042_01	GCACGTTTTTATGTGCCAGA	CCCCTGTGCTATCCATGAAG	SINE	Alu	Yb8	tacctcataatttggcccagtgcaaagagaaatgcaaacccccttgttcaaaagtttgaagacagcaagagtggagcaatcagtcaaaatcaatggtggt<br>ggtggggacaaatgaacaagtcccactcccaagaagccagcctgcctgtgtgtgtgggagaaagaacctcatctcagaatcccaagacttgttgctaggt<br>gagttactttgggcatctgttgctttagtcctttcagctgtaaaatgggttagccaggggctaggaggtgaaaattcattaatatatgcaagtgaagcac<br>gtttttatgtgccagacagcaaacaaatacaggaattattataataatgggccctctaaatgttggagtttttctttaattggtt<font color="green"><u>AAAAAGCCTACCTGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGCCTACCTGT</u></font>gaccttgcagagaaatacagaaactcttcatggatagcacaggggccacttctgccttatgaa<br>ttaacacaaatcccgaattcttggtggaacccttatcatgagattttactgtgcattatttgatctttccagttcaaagaagaaactactaaatgccaag<br>gtcgagagtattggagtctgggcacttcccccatcaaagttcttgtgctgaggtttgagtttcggtcaggttcgctgttgaatccctggcctgactctag<br>aacatcccggagtgcctgctggaacctgggaaggggcaccctagaatcttccaaccggcctcagtggcgagcgccgcgggcacacgactcccagcgcttg<br>gagcctctgcggtgttaggatg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	485	152	NA	intergenic
0	chr18	43353907	43354204	1000457	0	+	14275; RIP_Alu_chr18_043_01	NA	NA	SINE	Alu	Yg6	tcccttaccagaggcaattgccatctgaatttgccctgcccttattaaattataatttttattttgagaaattataaaaattcagaaagtaccaagaatt<br>cctaacaaacacctgtgtacagttgtatagcattgatcattgttaacaagttgtcctgtttgtttctcattaaataaagtaatgagggcattacagataa<br>agctagagctgtcttttaattgctggccagctcactccactcccaggtgctcagctgtatttctgcagcaaggtattagtgtatcctcaaatgacaacta<br>taaggtcagccacttagctgacaccaggccccagagggtatagcagagattctcatgagcacatacctccaagaaaaagcagatat<font color="green"><u>AAAAAGTAGCTGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAAGTAGCTGCA</u></font>atctagcatggcccaattactttatggaatcattgaccttagttgtggaaaggccattagaaatcagttacaatggaggccagagagg<br>ctgagtgactgatatgaagtcaccagccaggtatgtcagagcctggactgcacctgggtctcccatcaagcactgaattcaaggtgagctcagttgccag<br>ccgtgtgaatcatctgaatcatgatacgcttcacgctagactttccaggataagtgagtggaactggggattgagcttcctaggagtggaaggtaaagca<br>gaaagccctttcaggttgttaagaaacatttttcaaatatctgggtccacttcccttgacaggaagtccctactgcttgacatcacacgtctttcttg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr18	53952591	53952901	1000458	0	-	pAlu18-55586484; 14586; RIP_Alu_chr18_053_02	NA	NA	SINE	Alu	Ya4	aaaaaagaaaatgtgaaacccttgatttgaggcactaaagggtatagtccaattatagaaactctaatgtcactctaaggaaaatctaatgtccttctag<br>aatgttccttcgctttccattgaccttaaacctgaaaggttttacttaaatccctcctactccatcaccctttccctcactacttcacactgtactaaag<br>gtcttcctttgtgaatatccactgtaatcacagtcagtagctcccaggttcctccccttcattcgcctcaggttccctgaatatcaaaaaaaaaaaaaaa<br>aatgaaaattgcttgaagacaaaagaaaaaagattaaaagaaaaaatagaaggggaaaaaagaaaagaaattctgattttcactt<font color="green"><u>AAGAAATGGAATTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAAATGGAATTGC</u></font>tttaactgatttgggtgacaaccgacagccaaattaagaatattaggccaggtgcggtagctcatgcctgtaat<br>gccagcactttgggagcccgaggcggatggatcacctgaggccaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaaataca<br>aaaaatagctgggcattgtggcacgcgcctgtagtcccagctactcaagaggctgaggcaggagaatcacttaaacccaggagatggaggttgcggtgag<br>ccaggatcatgcctctgcactccagcctgggccagtgaacaagactccatctcaaaaaataaaaataaaaaataaaaataaagaatattaagctcacttc<br>ctttcatacct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NEDD4L:NM:015277:1/30	
0	chr18	55409175	55409496	1000459	0	+	Yi6AH29; 19421; pAlu18-57043068; RIP_Alu_chr18_055_01	AGTTGCATCTGGAACTTGAT	CTTCAAAGGATCTGAGGTGT	SINE	Alu	Yi6	taaaacaccaaaaaagaaaagccacaggaggaatatcccagacagatattaaaacatacaaccgcatcttaagttaaaacagggttgtatcgcacatgag<br>taagaggacagagaccaatggattagagcagaaaattcagaattagacctgactactttggaaattttgtatatgaaacatggtaactcaaatcactggg<br>gcaaaaatgggttttaataagttgtattaggacaactaaatagtccattagtaaaaagataaaattagatacagacttcactccatacataagaataacc<br>ttcaaaggatctgaggtgtaagtgtgaaaatttaaactacaaaagtgctagaaggaaacagggactcctctgtaacctgggcat<font color="green"><u>AAAAAGCTGCTAAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGGGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGCTGCTAAGTA</u></font>tgatcaagttccagatgcaactgttaaaaagaataaacttggctacataaaattacttttgc<br>atagtgaaaaatgccataagcaaagtcaaagaacaaaagaaaaactgggagaaaatatttgcatcatgtatcacaaattaaaggctgatatccctaatat<br>gtattaataattacatatatcacatatacatcgtataaactcaacaactggagggactccaaaagcccaagagaaaaatggacaaaattcatgaacacac<br>agttcataagataaaaatgatcttaagtgtgttaagagatttccaagtctacccataagaagactggcaaaaatgaaagagctcgaaaacactctgttgc<br>tgaggctgtagagaaacaggca	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	461	123	NA	intron:CCBE1:NM:133459:2/11
0	chr18	57879650	57879740	1000460	0	+	31724; RIP_Alu_chr18_057_01	NA	NA	SINE	Alu	Y	ggttctcaagagaaacactgaactcacaccagtagtttcagctgaatacactgactgtagtgtatgcttcctgagtctcaatttcagtttggtaaaatct<br>gctctgaagatgcatttgaaacacagagtactatgcctataaacagatatactatctaatgccctaataatacaatctttattatttaagaaactatact<br>tattaacctgcaactattaataacaggtgacaaatctctcaaaagtgttctgaaaatccatggcaatcaccacaacactataaacattacagatacatgc<br>cagactacattcacggggcagtcagctcccactcctctctcaaattctgggacagattcccgccatttcaggaataaatgc<font color="green"><u>AAAAAAAAAAAGCAATAAA<br></u></font><font color="red">GGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCATTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAA<br>AAGCAATAAA</u></font>aatagtgaggacaaaagggcaacattccattcccgtgaataaaaagcatggaatggctgaaatcgctaattatactattaacacaaagga<br>gtttaggaataaaattcgtcatgaaggggaaccagtgcaggagcacaattccaataaccccggcacctgtgaagggagctctgccggtcagtttataata<br>tcagcgacatgacaagaaacaccacagcttttcaaatgtaccttcacacaagaataattggaaactcaaaacttaaatgcaacattctcacaaacagaaa<br>gcagaaaaagtacaataatgaagttttgacatgtgaaccctatcgtatggtgctttagttttgaatcttgacgtacatttccccctacttc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PIGN:NM:012327:29/30	
0	chr18	64723475	64723476	1000461	0	+	9510; RIP_Alu_chr18_064_01	NA	NA	SINE	Alu	Yb8	atccttttactttcatattctcttatactattcactgctatgttttgctaaaatcatgaattttaaatctcagtccctactaaatatagtgtttggcaca<br>tcctcataactgtgtgttaaatgcataagtttaagtattgatgcttctgttattactatttgaatttaattatgtttcctgatttgttttcaactcttat<br>acttttattctatcagtaaggcaaatataaggttattggaagtttatattattctttaaaatctccttcatgtgtatcaaacaggtgatatgttaaccca<br>tatccaattaaaacaaagatgcaaaatttgacaatttaaatcacttatatttaataaaataccatagcaaaaattatgacatttacgaatgt<font color="green"><u>ATAATTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGACCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGTCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAA<br>TAAATAAAAATAAAAATAAAAAAAA</font><font color="green"><u>ATAATTTC</u></font>tattttttaatgtttgatgtaactagcatactactaataatccactatattattacaaaataatgag<br>ataaataattatttaccttcctatttaaaaggacataaaacactattgttacaaagattatttaaaattaaaactaaaatgcaagtttgagttaaaatca<br>taagattagtgtaaactcagattaatagatctgagccattcactattcttttttcttctctttttcattaaagtgaaatttcataacataaaattaacca<br>ttttaaagtgaacatttagtggtatttagtagattcacaatgttatgggaccgccctgtctagccctgtctatttaattccaaagcactttcatcaccct<br>ataaggaaacaaagcaagcgtgatg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CCDC102B:NM:024781:6/8	
0	chr18	66997721	66998038	1000462	0	+	22399; pAlu18-68631614; RIP_Alu_chr18_066_01	NA	NA	SINE	Alu	Ya5	ccctatcactctaccctacagagatttgtaaagagctaagaaagtaccaattatattatttgagtacttgctggagaggcaagtttctctggacttccca<br>gatatgtaagccagtaaatttaaactttttgcttatgtttatttgaattagatgtctattacttgaaagactgatacagaaattggtaccaggatatagt<br>atattgcaagtaataagcagaaaaatattgacttccctgaggtaaagtaaagcttcttcattcccagcaaggatgctgtcaatccttgctatgggcacta<br>aaggagtgaattaagctattccctactgtattttagaactcagattatgagtggactggaggatagagctttagctccagaagt<font color="green"><u>AGAAAAATAGCAAGGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAATAGCAAGGT</u></font>gttgtagtgtgttaactaaatcctgagtcattccttacactgcaaggaagcaaaacagcttccatt<br>caagcttgactctttgagagagctaagtgcacagcacacgattttcttaaaagagggtacatcttcctatgaccagcaattcatgagctttgagattcag<br>actacgatgcatattgtgagatcacaataattgaattctctgtcccacattgaagctaaatttagtaatttaaaggaagtgcaaagcaaaagatgagaca<br>ttgttaagaaagaatcccaagaaataaacatgcagcctcagacttttcccaaacccctcctattttgtattctctacctgatatggtaatgaactatcac<br>attttaaagcatcatgca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	70303423	70303748	1000463	0	-	13456; pAlu18-71937323; RIP_Alu_chr18_070_01	NA	NA	SINE	Alu	Yb8	ttcaagtaggcagttaagaagatgcaaacaagcatacagaattaagcccttaaagtcttgtaaatcactactttgaaggaactccaattattcccatgac<br>taccctccacccaaaacagcagcagcagcagcaaaacctagtctaaacattttctatgagtacttcttgctctctggttcagaacaattatataatacct<br>taactctaagtatgttaaagaaagttaatttaatgaattcaaaaaattggctgcaatctcctccaattcagtgaaatctttctgcactatgccacagatt<br>ttcacattcaaaaagctcaaaagagcttcaaaacataaggcatcgctttttccactagtacttacaggctttttacaaaggtcaat<font color="green"><u>AAAAACATCATGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACATCATGGA</u></font>atgagagtaaatctcaatgtggctgtggttagtggttagatctgtcgttctggttttttg<br>tcctgtgctgtcatgtctgcgccttccggacagtatgttctctgttttactgccgttatttttagccatacatatattttttttactagagatagagttt<br>ggctgccatgtgtctgaataggagtcttgtgatcagcttaacactgcgtttttcttttttaacgtttgtcttttagagatgcattactgttgatgtgtta<br>gtgtggcacatagattttcaaaatatgacattttgaaagactgttctgaaatatcactgtacgtcatgccagcacaaagcaccagccaacaccgaacttt<br>gacctcaaatactgaactagccacat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	71699010	71699319	1000464	0	+	pAlu18-73332903; Yb8AC1776; 238778; RIP_Alu_chr18_071_01	GCACCACTCTGTGTAGGCAA	GGCATACATTTTGCCCTTCT	SINE	Alu	Yb8	tggcacaagtcagcttctgggtaaggcatgcacattttatggcaccttatatagaccagtgaaataaatacacgagatgcaaagctcaaagtgatatatt<br>ccagatctgacatcttaccatggctttgagcttcaggcactgacaaatattccacacgtaccaactctcccagaggaggaaatataatgatgtttatgtt<br>atgcaatatgtaaaatatttatacgttgacttcaacacaaactgactatcatttaaatcaggaggtgccgctcacaataaaggcaagtgacattatctgc<br>accactctgtgtaggcaaaggggaactcagtacagcaaatgatccatttatgtacagaataagattccaccaatgtcagtgtttt<font color="green"><u>AAAGAATAACAGTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAGAATAACAGTTA</u></font>tgggaaaggtttttaatgtgcttgcttcttctagaattgttaaattaccaagaagggcaaaatgtatgccttcct<br>gactattgcccttatctttagaatgggaaagtcttttcttctgacaaaccattttttcatgaataacctcttcaatagcatttagttatcattattaata<br>aattgttacagtaataaattatattttaaacattttattaaatgcagttctcatgtacttaaaataaattgcaaagccggcttttttcatggtatttaat<br>atatatagtatgacacaatgtgcttttaatatatttaatgttatatactttaaaatctaagtgtgttgtacttttatggaacttactttatattcctttc<br>tatatggaaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	497	172	NA	intergenic
0	chr19	41738036	41738337	1000465	0	-	pAlu19-41722139; 31012; RIP_Alu_chr19_041_01	NA	NA	SINE	Alu	Yb9	tagtaagggctggagtctaacagcacagtgtccctcctgtgtgcctctattccccaaagaatgttcaacactcctatgtgttcagtcctttgtcaagagc<br>agatataaagcaaaagttgaatccctagacttttccttgtcatattcttggatagggaaaaagcagatggatctgtttgataattgggcatactctgacc<br>ttctccacagacttgagtttccaggtagattgatttgatgttgaatggcctcaagtcatacaaaatgatgatgattgtagacgcagcattggagaagacc<br>ttctctaacctaaacgttggaatataattaaggctattatatttttaacaagaaaactactctgtagccactaaaaaacacttact<font color="green"><u>AAAAACTTTATCGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AA</font><font color="green"><u>AAAAACTTTATCGC</u></font>tggaagtaataattgttattatataatgtgaaataatatgtcacatagtaatgaacttggagctacaagaaatctttaatttta<br>ttcataccccattttcaaagttagatatttttctcctgtacaggggaatgacggtatagaaacttacctttattgatgattcatgaggcaggcacatagc<br>atgaaatgtgcttgtatatagtacttcttttaatttgtaaactggttattaatttccagacatggttggctaaataagagatcccataagtatgcagaaa<br>gatttcagtggatcaaagggagtcttgaaagatgatagtctggtttggaagcactaatttccttacttcccatgtcacagtcttcttttggcctccttgt<br>tt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ZNF529:NM:020951:3/5	
0	chr19	56468220	56468513	1000466	0	+	238246; RIP_Alu_chr19_056_03	NA	NA	SINE	Alu	Ya5	aaggggaaagttaatatctgccatgtgttgtcagatctaatttattaaaaagtagctgggagttcagacttttatgtgaggatcctgatttttaaacatt<br>gcaactaatgaaagaaagtctgtatgcagttttcttaatgcaggctaaataaaaccccctgcattttaactacctcacaaagccactaatttgcaaactc<br>tagactatcttaaatgaggaagcagttccctagtgagggaagggcctggcccagaaaaacctagaaaatgggaggcaaagaccaagcctttggactgctg<br>gccgtccactcacagaagaatctagaacccttcctttgaactggcttcacatccaagttgtatgggtttcctgttgctttcat<font color="green"><u>AAGAATTACCACAACTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAGAAT<br>TACCACAACTT</u></font>tagcagcttttttgttgtttgttttgagaccaagtctcactgtgtcacccagactggagtgcagtggtgcaatctcggctcgctgcaac<br>ctctgtctcctgggttcaagctattctcattcctcagcctcccaagtaccaccacacctggataattttctaaaaatatttttagtagagacagggtttt<br>gccatgttgcccaggctggcctggaactcctggcctcatgtgatccacctgccttggccttccaaagtgctgggattataggcatgagccactgggccca<br>gcccaattttagcagcttttaaagtaacactcatgtatgatctcacagaaggtcaaaagttctggtgtggcgtggttcccctggttttctgctc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	24801400	24801668	1000467	0	+	Yd6JX352; 16745; RIP_Alu_chr1_024_01	ATCCAAGGGAAAGCAACACA	CACACCTAGCAGCTCCCTTTAT	SINE	Alu	Yd8	tcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagccgagatcgcgccactgcactccatgctgggtga<br>cggagcgaaactccgtctcaaaaaaaaaaaaaatcatatatatatgtattagaagtgcactgattaataaggaaagctgtttccaatatattgtcaaagt<br>ttacaaaactatatatacatggtaatctcaatcatacacataggttacccatacacatatccaagggaaagcaacacagcaaggtcttaacaactggtgt<br>gtctacatgatggcattgttagtttttgctgggagggggatgttcctaatttttgaggaatggtaaacacgcattgtttttat<font color="green"><u>AAGAATATGAATATTAT<br></u></font><font color="red">CCTGTAATCCCAGCACTTTGAGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGCAGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGGCGGAGCTTGCAGTGAGCGGAG<br>ATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATATGAATATTAT</u></font>ttataaagggagct<br>gctaggtgtggtggctctgcctgtaaccccagctagtcaggaggctgaggcaggaggatcacttgagccccagagtttgagaccagcttgggcaacatag<br>caagaccctgtctctggaaaaaaaaaaaagtttttaaaataaaggtagctaggccgggcgtggtggctcacacctgtaatctcagcactttgggaggctg<br>aggcgggcagatcacggggtcaggagtttgaacattgtgaaaccccatctctactgaaaatacaaaaaatcagctgggcatggtggcgggtgcctgtaat<br>cccagctacttgggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagctga	UCSC	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID:15008405</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	452	166	NA	intron:C1orf130:NM:001010980:3/4
0	chr1	27676716	27677028	1000468	0	+	19972; RIP_Alu_chr1_027_01	NA	NA	SINE	Alu	Ya5	cttctatatgagtacagattttttttaaatgtctttttaaggccaggcgcggtggctcacgcctgtaatcccagcactttgggaggctgatgctggcaga<br>tcacgtgaggccaggagtccaacaccagcctggccaacatggcgaaatcccatctctactaaaaatacaaaaattagctgggcgtgttgacacatgccta<br>caatcccagctactcgataggctgaggcagaagaatcacttgaaccaggcaggtggaagttgcagtgagcagagatcatgccactgcactccagcctggg<br>tgacagagcaagacttcgtctcaaaaaataaaaaataatctgttgcaatgagcaagtattacttttgtaacttcaaagagattt<font color="green"><u>TAAAAATAAATAAATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCTACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAATAA<br>ATAAAAAAAAAAA</font><font color="green"><u>TAAAAATAAATAAATC</u></font>taggatattagaaatgggaggcaggccgggtgtagtggctcatgcctgtaatcctagcactttgggaggct<br>gaagcaggtggatcacttgaaaccaggagttcaagaccaacctgaccaacatggtgaaacccccgtctctactaaaaagagacttgggaggctgaggcag<br>aagaactgcttgaacccgggaggcagaggttgcagcgagccgagatcctgccactgcactctaacctgggggacagagggaagactctacctccaaaaaa<br>aataaaaaaggaaagaaagaaaagaagtagaaaataaatttcatgcaaatagcaaagcaaaaaaaaaaaaaaaaaggatatgatgtaagaataagcaaat<br>tagtagctgtggt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:WASF2:NM:006990:1/9	
0	chr1	28120395	28120695	1000469	0	+	pAlu1-27480751; 238884; RIP_Alu_chr1_027_02	NA	NA	SINE	Alu	Yb8	tgtaatcccagcattttgggaagctgaggctggcggatcacttggggtcaggggcttgaaaccagcctggccaacatggtgaaaccctgtctctactaaa<br>aatacaaaaagattagccgggcgtggtggtgggcgcctgtaatcccagctactttggaggctgaggcaggagaattgcttgaacccaggaggcagaggtt<br>gcagtgagctgagatttcgccaccgtactccagcctgggtgacagagagagactccatctcaaaaacacaaacaaacaaacaaacaaacaaaacccatat<br>aagtggacctgtgcagttcaaacctgtgttgttcaagggtcaacttattgttcaatgctaaatttattaaactctaatagctaataaaactt<font color="green"><u>GAAATCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>A</font><font color="green"><u>GAAATCAA</u></font>acctttgggtatttaaacattgtttacacatttaattaaatatgcttaaaattttaaagtgcaattaaagttttaggatggctgattctta<br>taaatacttcagatatcttaaagagcagacaaaacatacagaaacaatggtttactgggaagctggtgaggtttaagcttcagggcccctcacttgcaca<br>gcctcttccaagggtctacattcatacttacttttgtatcttactttgcattctttttcttaaagaaagccacccaaattatgtaagcttctggccacac<br>aaaatctagatcctcatgtcccatacttctttggatccttgctttatttattttgttatcctcctaaggcttctgtaccattatttatttatttattttg<br>a	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	36247283	36247284	1000470	0	+	52475; RIP_Alu_chr1_036_01	CTGTGGAGAGAACAGTAGCGCAG	CAGTGGTTACATTAGAGTGGTAGG	SINE	Alu	Ya5	aaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaaggaggcctgccagtcatcaaacgtaagaaaagtttgtca<br>gagcagcgatggtgtgaggcagcttgctctagttagtggggttgggagtttttctggctcataatgggcaagaattgttcatgtgtacttttttttcctc<br>agctttcctttacagttagaaaacggccaaactgtggagagaacagtagcgcagtatttcagagaaaagtatactcttcagctgaagtacccgcaccttc<br>cctgtctgcaagtcgggcaggaacagaaacacacctacctgccactagaagtaatgccttcacactgctaattaataccctgttg<font color="green"><u>AAAAGAATCATGAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTACAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAGAATCATGAAC</u></font>gataacttacctcatacagaacatttattttggaatatgaactgtttttaagttttaatttattctaaattttctgtaatgaa<br>ataacacgaaacaagttcatccataatcctaccactctaatgtaaccactgttaacattttggtatactatacttctttcagtcttcatctggtgtacat<br>tttacttaattatacttaattactgtagagctgtcttgtttactacttttttacttaacatattgaaaataagtggtttaatgaagttgattttaaattt<br>ttatttacatgtaattggcactaagtaagagctaaaaaaaaaagatatatacatgtagtacaaaacttttttccatttgtaggtctgtaatattgtggca<br>gg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:EIF2C3:NM:177422:6/17
0	chr1	43630058	43630378	1000471	0	+	1438; RIP_Alu_chr1_043_01	CAGATAGTCTAGGACAACACCGTC	CTACTATATGGGGCTACTGAGCAC	SINE	Alu	Y	tgttcttaaccatattgttcatggtataagtaataaagtagccacagaatggtaaatctccagttcactgggatttggtgtggtaagacccaacattgaa<br>tatggtggtaggaaactatgccttatttaaaatagtcatgttcacagaggtggtagaatagctcatgcatcagaaatatcaatcaagatcaatcagaaat<br>attaacacaagaaaaactatgaaacagtttagaggatgtttcattatagattaaagtgaaaggaggtggagggatgttgtggggaaatgcaacatacctt<br>ttaggcagatagtctaggacaacaccgtcctgtagaaatctaaagcaagccacatgtgtaatattaaattttctgatagccacat<font color="green"><u>AAAAAAATGAAACAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCTGTCTCTACTAAAAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATTGTGCCACTGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAATGAAACAA</u></font>atgaaataaaatgtaattatatatttaacccaaaactcccaaaattttcaaaatgtaataaaat<br>acaaaacatcgtgagatatttaacattttttttggtaccaagtctttaaaatctagtgttgtattttacactgatagcacatcccatcttggtctagcaa<br>cattgtaagtgctcagtagccccatatagtagtctttaccatatagagcagtacagatctaaagtaatttcaagtcaagacacacaatcctgggagtctc<br>agccaaaagttaagcttttttttttttttttttgagacgaagtctcgctctgtcgcccaggctggagtgcagtggtgcgatcttggctcactgcaacctc<br>cgcctcccgggttcacgccat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:C1orf84:NM:001012961:1/5
0	chr1	45568297	45568298	1000472	0	+	14332;1104685509304; RIP_Alu_chr1_045_01	NA;NA	NA;NA	SINE	Alu	Yb8	taaaaatgcaaatctgactcctctctcctccacctaaaatgagtcagcagcctagggctcacaccctgactgacccagcaggccctgctgacctttccag<br>ctaaaccaactgctcacagctccttgagcactgcagcctgcactgggctccacctttgctcacactactcttgggactggaaagaacatcgctacggttg<br>attcccctcccaaacctgaagaaaaggattcatttctaggacgaagattaccagctgcttcctccaaacagcctttcctgatccgtctcccaattagaac<br>tgatagctcccatggatgggtgtggtggctcacgcctgtaatcccagcactttgggaggccaagatgggcagatcacttgaggtca<font color="green"><u>AGGAGTTCGAGACC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GGGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AGGAGTTCGAGACC</u></font>gtgaaaccctgtctctactaaaaatacaaaaattagttgggtgtggtagcaggcacctgtaatcccagctact<br>tgggagactgaggcaggagaatcgctttaatccagttgtgggagattgcagtgagccgagatcgggccactgcactctagcttgggtgacagtgagactg<br>tctcaaaaaaaaaaaaaaaaaaaaaaaagaactgatggctccacaattcatatcccacaaaactcagtacaggcatttcacacacctgtgacactggaga<br>gtcctcatcatttttttcctttccctctaccctgcaccccacaatggaaggtctccaggtcaagaactattcctccctccagtgaagcctggagtggaga<br>atgttcacccaga	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:MUTYH:NM:001048171:15/16	
0	chr1	56173882	56174191	1000473	0	+	pAlu1-55758902; 9984; RIP_Alu_chr1_056_01	NA	NA	SINE	Alu	Ya5	ccacccccatgattcaaattatctcccacccggtccctcccacaacacatgggaattatgggagtacaattcaagatgagatgtgggtggggacacagcc<br>aaaccgtatcataacactaatgcctagcacaacatatggctcattttatcaataaagactcattgaataaataaattcatgagagagaaaaaaacagcta<br>ggacaattccaggggctgaattgagcctggacattcatcactcaagatatctcaagggagtgcagccaggaaggaatcattgttgaaaaactgaaggtca<br>aagtcaataaatccagaccacatgtcttgtccaaagacagaatatcaacctaagaatgagttggcaaataaagagtttggtgagtttat<font color="green"><u>AGAAATATAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AGAAATATAGG</u></font>acaaggtacaaggaatggctgaaggagagaggttgtcctgttcatttgggctgctgtaacaaaataccttagatttggt<br>ggcttataaacatcagaaatgtattgctcccagttctgaacactgggaactccaagatgaaggtactggcagagtcagtgtctgtggagggctcacgctc<br>tggttcatcattagcactttcactgtgtccttacagtggaaggggcagggcaactgtctggggactattttataagggcactaatcccattcatgagggt<br>gtcaccctcatgacctaatcacctcccaaagtcctgacttgataccatcgtcttggggattaggtttcaacatatgaattttgaggtaacaaacattcag<br>accatagcag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	63234540	63234541	1000474	0	+	11594; RIP_Alu_chr1_063_01	NA	NA	SINE	Alu	Yb9	ctgttggggtcttcacattccttcatctcattaatatatatgggagtgtgcttccgctgcttcgctccctgatgcagactgtcctcaggttggcaaggag<br>tgggcaggccctgcagagtcccgcctgaggcctggcgaggctcagatgcaagctcaggatccaagcaggtatcttctttgtaatttccaatgggttttct<br>ttgacttgagaagagacccttcgctgacctctcaccatgggtcaggcctgctgctaagcaccttcttatgctattttgctttatccttaaaacaaccctg<br>caatgtaggttctattggcttctctaagtcacacatgtaacaatttgctcaagcttactcagtacagctggcattctaattcagcc<font color="green"><u>AAAAGGGAGACATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAGGGAGACATG</u></font>aacaaacctctcgcaatctccaacatacttgctcttttagaaaatttgaggccaccatcttctacattaaaaacaaagca<br>aaccaggcacaggggcttatgcctgtaaaaatcccagcactttgggaggccaaagtgggtggatcacctgaggtcaggagtttgagaccagcctggacaa<br>gatggtgaaaccctgtgtctaccaaaaatacaaaaattagctgggcatggtggtgcctgtctgtagtcttagctactcaggaggttgaggcaggagaatc<br>gcttgaatccaggaggcagaggttgcagtaagctgagatcatgccactgcgctccagcctgggtgacagagtgagactccgtttcaaaaaaaaaagataa<br>aaaaat	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	66036512	66036830	1000475	0	-	14541; RIP_Alu_chr1_065_02	NA	NA	SINE	Alu	Yb8	taaataagaagtactaatatttttcaaatgcattaagataacttgaaaaaaaaatgttccatagagtaaacgtcacataccaagatttttgtcttagact<br>ctacagacagggtatgatttgacatttaattctgtaattacagtaatattaattaacttaatttaaataagctatcttgaactaaggtttaaactatgtc<br>tccacacctaacagatatatattacagggaaatacaatcaaactagtattttcaatgatagtaatggataatgtggttgaggatttaaactagagtgttt<br>ttaaaaagccgggtgcagtggcttacgcctgtaatcccagcactttgggaagccaagacaggtggatcacttgaggtcaggagttc<font color="green"><u>AAGACTAGCCTGGC<br></u></font><font color="red">ACGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTAGCCTGGC</u></font>caacatggtgaaaccccatctctactaaaaaaaatacaaaaattagccaggtatggtgttacacacc<br>tgtaatcccagctacttgggaggctgaggcagaagaattgcttgaacccgagaggcagaggttggagtgagccgagatgcaccactgcactccagcctgg<br>gtgacagagcgaaactccatctcaaaaaataaataaataaataaataaatttttaaacatttttaaaattaaaaaataaaaataatgcaaggggcatccc<br>aaggaggactgagaatggtggcaagagggaaatggactgcttagtgacctctaggctggaggaacagtagagcaatagagcagtggatgtcttccaactc<br>tctattcaacagcagatta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PDE4B:NM:001037341:1/17	
0	chr1	71513921	71514217	1000476	0	-	pAlu1-71125971; 21214; RIP_Alu_chr1_071_01	NA	NA	SINE	Alu	Yb8	cctgagaacccactcactttcagaagaacagcagcatgggggtaactgcccccatgattccattacctcttaccaggtccctcctatgacacatggggat<br>tatgggaatgacaattcaagataagatttgggtggggacacagccaaactgtatcagctacattgaacaaaatacctttttaaaatatctaaatgttatg<br>atgtgatatgatattattttgtcatgtattaactcaggtttatacataaagttttcaccagatccttggtaactacagccaatgttagatacaatattta<br>taatttcctaaataacatcccttctatgtaattaattctataaaaataaatgcattgatccagtaagaacagaacttttattcagtt<font color="green"><u>AAGAACAAGGAAC<br></u></font><font color="red">CTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG<br>CCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATT<br>GCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>AACAAGGAAC</u></font>tctccagagagtttagaaatcagggttaaaggcctcaaagtcatattaaacaaagtataaagtaatgtaacagactttacgttaaacatg<br>gaacattaaatctgtacatatatgtccatattatctggaaatcctactaaatgattgtaaaagaagaaaaaattttataaaataaagataaaatgactaa<br>gaaaaaaagacaacagccaataagcgtgccaacaatatttcagaaggtaagatgcaacaagatggctagtaactgagtataatctgtgttttctgtggtt<br>tcagtgactattaaaggaaaggagtgaagttggggtacaaaaatcaaaagaagcaagctgattcataccactaacaccataaggatttaggccttta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	75784470	75784783	1000477	0	-	55223; pAlu1-75427689; RIP_Alu_chr1_075_01	NA	NA	SINE	Alu	Yb8	gatcctcttcagacatttttataacaagttagtatgagtttattttggtgcaaagtttttaaaatccatgcatggttctttttttcataatacacacttt<br>ccatgaaccttctgaagacccttaatataatcaccagattcctaggtaggagttagacattttcgaggactgattaaggagcattggaacaagacagagc<br>tagtcttcgattttagttagaagtttgtggcaagacttagaagtttcaaagttttacaaagtagaaaatggttgagtaacatagaatgtcggctgtaggt<br>gtccttaacatgttacattggaaatgtaaaaattaaagaaaaatgcgattaaaatttaaaaataggtttaaagataccactttt<font color="green"><u>AAAAATTTTGAATTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCGGGAGATCGAGACCATCCTGGCTAACAGGG<br>TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTTTGAATTTG</u></font>aacagtcttatgaagaataaaaatacaaactaaggagaagaactttcaaaaaaagaatgggctgggcacc<br>ttggctaggagttgtaaccccagcactttgggaagctgaggtgggaggatcacttgagcccaggagttcaagaccatcttgggtaacatagggagacccc<br>atctgggcaaaaaaaattagcttggtgtggtggcacacacccatcatcccagctacttgggaggttgagttgggacgaatcacttgagccgaggaggttg<br>aggtttcagtgagccatgcttgtgctgctgcaatccagcagcctgggtgacagaacaagaccctgactcaaagaaaaaaaaaaaaagaaaagaaaaaaga<br>atggttaattaact	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SLC44A5:NM:001130058:1/24	
0	chr1	81124118	81124119	1000478	0	+	8258; RIP_Alu_chr1_081_01	NA	NA	SINE	Alu	Ya5/8	tactggtcatattatatgctagctaattctctaagatttgtcagttaaacatttgcccatatgtaaattttaacagacactaatatattcctttccaaga<br>tgattttaatagtctgtctccccattggctttacttacacaagtatttttcatgctactctgtgatagtactgaaaatttatcagtactgctcacttatg<br>cttatctgatgaattttgtgtttttctgtcatcagtcatttctgtaaacctaaaggatctattaaatactttctcgtttctcagcacacactcttagtaa<br>tgtttcccacagagattattaaaagaaacaaatagttactttatacatttaaaaagctataatcccatcctaactttaagagagtctaaaa<font color="green"><u>GAAAATTGC<br></u></font><font color="red">GCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAG<br>CGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATTGC</u></font>ttatcctcataatcaggaaagggggattagatggttaccaagtttatttaatg<br>aaaaaaacaaaccttaagatgaaccaaatattcttagcaaaaagtaaggaaatcattaatgtattatagttatgattttgagcatctacttcatgccaga<br>cttcatacacatatctttccttatccttacagcatcactgggaattaaatagttgacccattttaaacgctatggaataggctctcaagagagtaagttg<br>tataaagtcataaaactggacattactagagcccagtttttaaccaagttctttctgtgaaatgattcgcattttcttcccagaaatgtatacaatttac<br>tctgctgcactgttaacaatcacttataccacctggct	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	82815243	82815552	1000479	0	-	545; RIP_Alu_chr1_082_01	NA	NA	SINE	Alu	Ya5	atcagcagatgtatagttaccatggcagcagacaagatatggatgatattaggcaaataaaagtaaacaaagataataatatttaaaagatagaattttg<br>ggcagaaaggtaatttgatcaacactttagttgatgggttttttcaactttaagaattatagggattatatcttaatttcaagatatttaaataattatt<br>attttaaattaattggattatttttaataattagtcacagactaaacaagaaggaaaattctaccagatagaaatataaagattccattttataatgtct<br>gtcaatatagcagaaattaaaatgtaagtaaataaataaaatagaggttaaacaattttctcataaaagttgacaaaaaaatttaaagtt<font color="green"><u>AAAAATATAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAATATAA</u></font>atacaagctacataggaattaatgagagtaaaacattttgataaaagttaagcaatgtaattaaaatcaatatttaaagt<br>tcaattaaagatgtgaattgagagccaggacagcaacaaaagcaattgcaaggaaaaataataccaaatataaagacaaattaatgaattagaaaaataa<br>aacatgacccagtaaattataaagaagaaagtatagcaacaaaggtggagtttttgttttaagttatacatttgctttttgaaaatatgtgttaaatatt<br>tgaaattttcaataaacagagtcattttctaggaaataaatatttattcaagaaaagcaaactatactgatgaattatcatggaggagactgaaaacatc<br>atcaaaaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	94024056	94024359	1000480	0	+	10372; RIP_Alu_chr1_093_01	NA	NA	SINE	Alu	Y	aatgtgctagctataccaaacatgtctgtgaaccatatttggatgtatacaaaaagatctagctatatcacaggattgtgagaaggataaaatgagatgg<br>aatagaaccaacaataattaactagtgaatatgcatcattaatgcttttaagaaaaacccacagatataatacaaaataggtcagggtctggtgacaggt<br>tgtactttccaaagatggctgcaataacatttcccatccacatgctatttttataaggtaaccatgacactttttctatcaaatggtggaggttactttt<br>cctcccctgaatctgagtgggactttatgaattcctgaaacaatagtatagtggaaattatacgatgtgacttccaaagctagtaagtcat<font color="green"><u>AAAAGTGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCCGCCTGGGCGTCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAGTGCC</u></font>atgcatttctgccttgctccctgggaatgctcatacctgtaacccagcctcaatactatgagggagcccaaggcccctgtggagtgc<br>agaggaccatgttgacaggaaccaaagcacccagctcacacacttagctgggctcttagccaaaagctagctctaactggctagctatgtgagtaaacta<br>tctcgaaagtgggtcctccagctcccatttaagtagccccagctgagaccatggagagcagagacaaagccattcctgctcagtcttgcctaaattacag<br>attcataatcaaaataaatgaatgtcattgctttaagtcactaagcttaggagtgactttttacacagaaatagataaggggaacaggatcaaatgttga<br>attt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	95463113	95463417	1000481	0	+	7377; RIP_Alu_chr1_095_01	NA	NA	SINE	Alu	Ya5	gccattctataagatttcatgatctcagaaatcaagtcatcaaggaaatgacaaaataatgcatgtacaagccatcttgtctgctgcctggctaatgcca<br>aggcgagatgccattgatgttttggagcttcttgatttcagagacgttaaaatatatataaaaaatgcatctaaaaagtgatatacagtctgggcatggt<br>agctcacacctgtaatcccagcactttgggatgctgaggcagaaggatcatttgaggccaggagtttgagaacagcctggacaacacagcaagaccctgt<br>ttctacaaataataataataaaataaaaagtgatacataaagaatactagactgcccatatcactacaggtacctcactttgtcaa<font color="green"><u>AAATAAATATAATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>TAAAT</font><font color="green"><u>AAATAAATATAATT</u></font>ataaaattatttgaaatagcgagtttgtttaatgcattaaaaattatttgaataattgctggctgcagtggctcctgtctg<br>taatcctagcactttggaaggctgatgtgagtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaa<br>tacaaaaaaattaggcaggcatcgtggctcatgcctgtagtcccagctactcaggaggctaaggcaagagaatcacttgaacccaggaggtggaggttgc<br>agtgagctgagattgtgccactgcactccagccttggtgacagcaagacttggtctcaaaaaaaaaaaataaaaaatttgagtaactactcagtctgtgt<br>aaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	102820281	102820596	1000482	0	+	7148; pAlu1-102338773; RIP_Alu_chr1_102_01	NA	NA	SINE	Alu	Yc1	tcccacccttgacacctggagattatttcaattcaaggtgggattttgatggtgaaactgagccaaaccacgtctgtgagccaagatatctacattcatc<br>atcaaaatgggaccttcggaatttcctcagtgaggttactaaccctagccatgcatatccacgccataccacactgactagattcactaaggtctgtcat<br>aaggaaggcatccaaattgaatagcattttataactgaggagcactagagagaaaaggtgtgatcatagcataagatttgttctgcttcaccccagaagt<br>ccacaaatgggaaaaatgagggcagctttaatttgctagaaaaaagcaacacctgtattttgagtatatatcaaaccctgaggatt<font color="green"><u>AAAGTTCTTGTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGTTCTTGTTTC</u></font>agctctccatctaatggattatagtatacaaagttcagctttttcggttactgcttttaaagttttctaa<br>tatgattaatagctttaacaaaaaggtatctcttaagtgtgcaatatagttgctttctctcacatagacagtcttgtttggaaacaatttcttttgatgt<br>agttctaaagaaatatttacctttaacaggaacactagatattttttcaatgcagaagctttttttctgttataaagagagcaataatctgtagtataaa<br>gaattaaaatttaaaactaactactgtattgaatgaagactttgatttatacctaataaattttagaaagttttaaaagctaattttataaattatttta<br>gtcaatttaagggata	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	102868669	102868973	1000483	0	-	53299; pAlu1-102387157; RIP_Alu_chr1_102_02	NA	NA	SINE	Alu	Ya5	acaaaggttagctttctcgtggttcaaaaaataggctttaatattttttctttttttaaaatgaatccagaaactataagaaagtcttggcaaatcatgg<br>aactagactcttctttttatttctaatatatcagtgtcaatatttttaatagagtctacatggcattaccctagtcattattcatttaaaaataccaaaa<br>caaacaaacttgctaatccaatctgtaaaatggccatgagtttaattttgcaaatgttattgagatctatttagtaagagtgggatatccatcaagagtc<br>ataatgatatttataaaatatgtatagctgcctagtctacttaaaaggaacatccagcacaatcagggcaataactacctttttat<font color="green"><u>AAAACATTATTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATTACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCGGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAACATTATTACT</u></font>gttctattagtgctataaacaaagtattgtgctactccagtgaaatgaacattattcaccaattggaaccagcaaagattc<br>catgaaatgctaattgaaacttggattttgatgggcatatatgagggatagtagggaacttcaagaaaaaaagcgtggtgtgcaatctgccacaaaaatg<br>ggatgaaccctagcaattgttgctgtcagcaagatgtctaggtgatgactactactttcttctcttgctttggcctgctaactggttctgctgccttctt<br>gagagcacacaccttgaactgctgctggctggctatgatgctcatcagctcatgttgggcttgcactttgagcactattcccttgtgctgctttgtgctg<br>catat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	105229844	105230162	1000484	0	-	5866; pAlu1-104585259; RIP_Alu_chr1_105_01	NA	NA	SINE	Alu	Ya5	cagtccttaagaatcttggcatgactaacataagtgaatttgtattaactatgagaaaatatcaaggaaaaggattatagatgtccatgttagataatcg<br>gagctcatgtttttgtctctaatgactcattattctttacaaatattcataactaatttatctgtgaccaaaaactatatttcatcaattctaagatgca<br>taatttttacattttaaaatatcttaaattatagtgcatatgaaaaagcaaaggaaaatatcaacagagtaaacagaccacctacagaatgggagaaaat<br>attcacaaactctgcatccaacaaagatctaatatccggaatctataaggaactttaacaaatcaacaagccaaaaaaaacaaaccatt<font color="green"><u>AAAAATGGGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGGGCA</u></font>aagtacattaacaaacacttatcaaaaaaagacatacatggagccaacaagcataggaaaaaatgctcaa<br>catcagtaatcatcagataaatgcaaatcaaagccacaatgaggtaccatcaaacaccagtcaaaatggctattattaaaatgccaaaaaaataacagaa<br>gctggtaaggttatggagaaaaggaaatgcttatgcattactggaggaaatgtaaattagttcagccactgtggaaagcagtttggagatttctcaaaga<br>atttaaagtaaaactaccattcgatccagctttgccattactgagtaaatacccaaaagcaaacaaagcattctaccaaaaacacacatgcacttgcatg<br>ttcattgtagcactattca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	112793519	112793520	1000485	0	+	32729; RIP_Alu_chr1_112_01	NA	NA	SINE	Alu	Ya5	ctatggaaaatataacatcagtgatcctttaatggctctacagagagattttgaaacactgaaggagaaaaatgatggcgaaaagcagccagtctgcaca<br>aatccactctctattcttaaggttgtgatgaagcagtgcaagaacatgcaggagcgcatgctgtcccagctggctgctgctgagagcaggcaccgaaagg<br>taggttcacctcagttgatgtgtaaatctttgtgaagtctttataaattatgcctgatactttcttgtcagctgccagtttttcacagtaattcaattgg<br>gacatctcacgggtatcaaaaagccccttagtttatgtaagagccaggagataaaaaagaaaacacagcttattgcaaatgttaag<font color="green"><u>AAATAACGTGTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAATAACGTGTCTG</u></font>aagacagcatttcttcttgatatgtcactccaaaacactttgtatgttttttcagttcttgatcattcaaactttggggtttgg<br>ccaagcttgtagctgacgggagtgttctctatttgcttacttaagagataaataaaaagattaacaggtatttgaggcatgctatatccaagggagagaa<br>agaatttacctgaggataaacacagaagccaatagattattttcatttattcctattattcctagttttgagtttcattgcattttgttgctcatgaaac<br>cataaacagtcccttggtttatttaccttaaaggtgttctactctattagtgaggggtgtgtgtgtgtgtgtgtgtgtgtgttttccatatttaacaagc<br>cc	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CTTNBP2NL:NM:018704:4/6	
0	chr1	114845054	114845355	1000486	0	+	14400; RIP_Alu_chr1_114_02	NA	NA	SINE	Alu	Ya5	agtttttaaaatgaactttcacaagataatacattttagtataagagtgagcaaaaggtgaatggccaaggtttgtcttggaaaaagaaattttttaatt<br>aaaaaaaaaaaaaggagcaaaaggtcaagatcagtcgagataatcttgaagatgaccaaggtatacgtagagagggcagtgaaattaccttaatgaacaa<br>aacttactgcttattattataaagctactaagaacagcaaaaaaaaaaggaggaaaaactattttaatataaaaacatgaaaagacagctctctaaaaag<br>tgtatcagttatctattgctatgtaacaaattacctcaaaaattaatgacttaaaacaacaataattatttctcacagctttcttgaaac<font color="green"><u>AAGAATTTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG<br>TAAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAATTTGG</u></font>gagggacttggcaggcagttctggcttagtgcctctaagaaggctgcagtcaagatgtcagccaggaaggactgcagtcatctgaaag<br>cttgattaggatagagaatctacctcaaaagcggctctttcacatagctggcaagttggtgctgggtctttgcagaagacctcaatttttctccatatgg<br>cctctttaaaggactactagagtatctttcacagaatgacagctgtttttcacccagaacaagggattcaaagagcaaggaaaaaactgtatatatggct<br>ttaatgactttttaataaagtcactattaattctattatattctcttggtcacggagaccagccttgagcaactggacagcaaccatacaacggtgtgaa<br>ta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TRIM33:NM:015906:1/20	
0	chr1	204599779	204600096	1000487	0	-	17726; RIP_Alu_chr1_141_01	NA	NA	SINE	Alu	Ya5	atagaagctcccttaattggtcttcccttgctgcttccaccctactcctcctaaagcactctcttcacacagaagctggaataatcccatttaaacagaa<br>gtcagactgtatcatgcctctccagtcctccagtagcctccaaggcccttcctgaagaaacctgctcgctgccccagaccacatctcccaccactcttcc<br>tcttgcctactctgtacaaggtctccttactgtttctcaaaccagataagcgcattcccatctcatggccttagatgtgcactattatctctgcctgaaa<br>taccttcctcaaagagctaaacagcaaaatccctcatttcctccaagaatcagttccaatgccaatttatcagtgaagccgtctct<font color="green"><u>AAAAGAGCAATATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAGAGCAATATC</u></font>cttgtaccccatcctctttgccctgtttcattttatcatcatctgatatattatatatttacttttttatgtattatctgtt<br>tcaactattagaatataagctccatgaaggcaagaactttttgttatctgctatattccagtgcctagcacagtgcctggaacatgggaggcacactgta<br>aatatctgctgaatgactaagtgaactgctgaatgactaagttgaatgacctcctcccacctcatgtcaggccactcagtcctgtctataatgtctttcc<br>tctgccttctggtaaatctaattcttttagttcccattgtcattatccaagtttctattatccctctgaattattgtagcaggctcctatatagtttctt<br>ccat	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SRGAP2:NM:001042758:1/18	
0	chr1	145124845	145124846	1000488	0	+	11425; RIP_Alu_chr1_143_01	NA	NA	SINE	Alu	Ya5	tgactgtgagcctagaaagttgaaagtaatttctttattgagaaaataaagacatggttcctaaggaaaagggctaaaaatgaccatgtttcaagtacac<br>tagtgaatagcaagtgaaacaaaatgtcttaagcatctatatgtcttatcttagatacatacaactattgtaggaacattatttctcttatctctcagga<br>aacatatttagttataatatgaaaaaaaactaaaattgagcttctaatagaaaatcaaaccctatcagaagaagagttacgtggagtaagcgattttata<br>ccgatgctgacttactctccctaccataaaatttgataaacaacaaacatttattaagcacctaccacatgtcaagaactctgcta<font color="green"><u>AAAGACATACAAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAGACATACAAAG</u></font>cctgagctcccagtctagggattaccacaaggaagagtgacggatcatgagtggaagggagatgagttaatacaaatggaaaac<br>aggtttcattgtaggaaaaaggaaagtgaattaatgctttcgaaagagacattaaagtagatttctgggcaatatgaaactgagagtcaatctcgtcaga<br>ttctgaaggcatctgtagataagcttcccaatgaaaaacagggcagtgacaataggacaactagaagtaagctataattatagcaaagaaggcaagagct<br>agcataaacttgcctattgtcattgttgaagtcatagaactactcctttcaactactcttgtcatcagaggcttcctgatgcgatcatctgtggtgagga<br>ta	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	exon:3UTR:FMO5:NM_001461	
0	chr1	181218647	181218931	1000489	0	-	238935; Yg6AH108; RIP_Alu_chr1_179_01	GCGAAGCATGTGCCACACCATG	GTTAGGGCTTTAAGAGTGTATGAG	SINE	Alu	Yg6	aatggcaaattttgttatgtatattttacaacttttttttttaggaaagtgaacaatgcacgttggaatctatagtgcaactgctagaagaatagtaaaa<br>gaatatataacaagcaagctattcgaggtgaaaaatcaaatagaaaatgattcctttttacctgtctatgtacaatgcaataaaaagttattaataaaaa<br>tgtattcaggtgaaaaatatactgaaaatgttcactaaaataatagtaaaaattgtgtgttagggcattaagagtgtatgagatttgttggcctcagttg<br>tctaaattctctatactatggctattggctcataatatactgctttgtcataaaaccacctctatcatgtaaaaaatcttgctt<font color="green"><u>AAAAAAGTGATTTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGTGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGCT<br>TGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGTGATTTAC<br>T</u></font>gtttcaagtggatatcagatctgagctgtttgtgagacaattattaaaagaaccactaatagaagtcacagtttctatcaacttagaaatctttcaaaa<br>cagaatatctctggttttcctaaccatggtgtggcacatgcttcgctatagcaagttgtacttaggcattttagataaaaagtaggtaactcatctggat<br>aatttactcataatatgttcactttcagcaaaagcttaaccaatatctgatcagtacttggatgaaaattaagtccatgcatcaacacattagctacaaa<br>aggacaagttcttgttgtgtctaatataaattctctgttagttttcagttgcagcacacaaaaaaagttcagtttgttctagaac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr1	195045816	195045817	1000490	0	+	2978; RIP_Alu_chr1_193_02	NA	NA	SINE	Alu	Ya1	aaccctcgggggtccagttctacactgttctttccctctttgcaataaatcttgctgctgctcactctttggttccacactgcatttatgagctgtaaca<br>ctcactgcagaggtctgcagcttcactcttgaggccagccagtgagaccacgaacccactaagaggaacgaacaactccagatgggaggaacgaacaact<br>ccagatgggaggaacgaacaacaccagacatcccaccttaagagctgtgacactcactgaaggtctgcagcttcactcctgaagccagtgagaccacgaa<br>cccaccagaaggaagaagctccaaacgtgtgaacatcagaaggaacaaactccagatgcatcacctttaagaactgtaacactcaccg<font color="green"><u>AAGAATGAAGCC<br></u></font><font color="red">ACGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGAATGAAGCC</u></font>aagtcagtgagaccaagaacccactaattccagacacactaccattactaaaacaaaatgccatggatctgggaa<br>gcagcaggcttgagcaacatcattactggagtgatgtatagcatatgcttcagtgaaacaaaggaaattcaggtttctcacacacacacatgctgatgtg<br>gtttgtatctgtagaaaaaatgcatcctgtatgacccagtggtggtaggacaaagaagtctgcgtgtgagttctatggatggatccctcaacgaacaacc<br>ctctcctactgctgctgtgccctttgcctgtgatacagcctttttgtgagcataagttgtttgagtcctgtgaattccttcagcaatccaacaccaacat<br>tcttaccacctgg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	215820714	215821000	1000491	0	+	18079; RIP_Alu_chr1_214_01	NA	NA	SINE	Alu	Yb9	tgaaacattagtaattatgatgctgatctctagtaagctaacctttcaacttacaaatcaataaaagctaataggtaaacaattttacttctagaaaaac<br>aaatctgtatcaaacaagaagtgcttatatttactaaagtatatatgattatggtgaaaattttccccgttatctcaaaatggcagcaaagagaactgct<br>cacctcctactataatttttctttataattagtgtacagcattaccttcggtaatctcaatcctttcacttttatcatcctcctcctttaaaatctttcc<br>tttccccaactatcttctcaagctttgctacttactaagagtgggtcccaggccagcatcatcagcatcttctgggagcccatt<font color="green"><u>AGAAAGGCAGAATCTC<br></u></font><font color="red">CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAA<br>ATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTTGAACCCGGGAAGCGGAGCTTG<br>CAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGGCAGAAT<br>CTC</u></font>aagttcctcccacgacttattaaatcagaattgacattttaacaagatccactcccaccagccccaagatccgctgggagattaaatttaagcatct<br>ccgctctacacttggtggaaaggatttctagcctcacggtctgtgtctcttgttcttaccctttatatgttttcattggtcctcaggttaataaggttag<br>taagcatcttaaaaactattgatttcaaaacttccattttacagataaactagaaataaactttaatgcctagcacaagaccttacaagaaaaggccctt<br>aataaaagacaagttggaagacaaaggcaagatgacagagaagttgaagctaaaagaggttaaggatttagacggtttctatagcta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:GPATCH2:NM:018040:5/10	
0	chr1	217989947	217990249	1000492	0	-	865; RIP_Alu_chr1_216_01	NA	NA	SINE	Alu	Yb3a1	tggcaaatcaaggaaacatgtccattcacctcttttcatctggtgatttgcttcttcaagctaaaaatctcaagttgcagttctggcattagtttcttta<br>ggaaaactgagattgctttacaaggtctcacatcttcagttgaaagtcagatcagtttccatatccagaaaagtagcttcctctaatctgctgttttgct<br>ttctgcagtttcagttacctgcagtcaatggtggtcagaaaatggaaaattccagaaataaacaattcatgtgtttaaaattatgtgccgtttgagtagc<br>atgatgaaatgtagtgccatcctactctgccttccccagggaatcttccctttgtacagcatcaccatgctctaagatccaagtt<font color="green"><u>AAGAATGAGTCCATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCGCTCCAGCCAGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGAATGAGTCCATA</u></font>aaattgtgaagaagggaaaagaaattctttccggttttgctgtcacacctcagactgcaagttacaaccacggtgtgtgatg<br>agagttaagatgaagaaggcattaaatttgtgtgtggaagacacaaatagaaatgcattctggttgatagcaatcagatttggtactatccatggtttca<br>gacatccactgggagtgttggaacatatcctcctggagaagggagcaactgctgttcttaaccgggtgaatctcacacccagagcttgctatttgcatat<br>agttctctatcactgatgcatttattaacaagatataccatcaagagggtttttgattaattgtttggcagtctcagtgtgtcctggctcacaagagcta<br>atc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	222459458	222459757	1000493	0	-	8542; RIP_Alu_chr1_220_01	NA	NA	SINE	Alu	Ya1	tggctctgtgagctctggtctagtgtctacgcagaggacaccaagcaggccctgggacacagcaatcctgagtgtgtttggagcagaaagcagcccatgg<br>tggctggaccacagggagagatggcctgggagagtcaggcaggagcctaatcatatggtttacagccctgcgtgtgtgtgttggggttgggggggggggg<br>ctgggtgtgtgtatgtgagcaacgtgtgagtcatgtgggatgggaggcccccttgcactttccttctcagccccttgccacctgacatccacactcacac<br>atcctcacaggcagttccgttttgaaaacctgatttcatgtggccagtccagtcttaggacaaatatatattcatagaaggcaattt<font color="green"><u>AAAAAGCCAAGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACGGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAAGCCAAGTC</u></font>atctcaacccgagctacactagatgcacggctgtgtcagttaccagagtccagctcggtgttggctaatagtggaagcacaacttcc<br>attgccaaagctcagagacagaaactccggagatggagcaggcagataagtgtgtggctggcgcagagccaggccctcggagatgacgagcatgtctctc<br>accagccccttctgcagtgagtggctgtcccacgggtctctccagctgccaggggagaatgaattagggtgttgagaattacccaaacccaaggctgggg<br>agggtgtgactccatctaggccagtccttgtctttgctaatccagcatgacccaggcctgctgtggaatattttggaatatattggaatatttggaatat<br>	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	226090730	226091023	1000494	0	+	33258; RIP_Alu_chr1_224_01	NA	NA	SINE	Alu	Ya5	ggcaggacgatagcttaaggccaggagtttgagaaaagcctgggcaacatagcaagactttggttataaaagagagattttgtttgtttgttttttactt<br>ttttttttttcgagacaaggtcttgctctgttgcccagactggagtgcagtaatatgaacacagcttattgcagcctcaacctcctaggctccagcgatc<br>cttcttcctcagcctcctgagtagctgggaccacaggcatgcaccatcatatccaggtaattttctttattttttgtagagatgggggtctcattttact<br>gcccaggctggcctcaagggatcctcccgcttctcaaagtgctgggattacaggtgtgagccaccacaccaagccaaaaaagttttt<font color="green"><u>AATAAAAGCTTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AATAAA<br>AGCTTCC</u></font>cttccataacagaattttcattggaaactctcatctttcatgtgagaatgcctttattttatactctacatttttatttgagacattgtttac<br>aaactctaaaatccacaaatattgtgtacagctgaattatgttaacatattcttttttcattttttaaaatgttatttcttgtaacattggagttacaat<br>gaatttttaaagcaaattccagatactatatttcatccataaatatttcagtgtagacaaacattttatttatatatttatttaatcttattttattctt<br>ttagtggcagggtcttgctctgtcacccaggctggagtgcagcggcacagtcatagttcactgccgcctctaactcttgggctcaaatgatcct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:MPN2:NM:183062:3/5	
0	chr1	229151786	229151787	1000495	0	+	16963; RIP_Alu_chr1_227_02	NA	NA	SINE	Alu	Yb8	ctgttcactgtatggatgtcagccattcattccacaattatttactcagggcctactgttagctatctcaggttccatgtgctaggaataccatgcaaag<br>tcatgctattcttgccacatactaggaatagcaagcaaaaaccaacacagaagacaaagatttgcctatcagatcaaagtcagctctgctaagcctattc<br>ttcccaaagggaagcaagcaggacaacatggctaataatagtggggtgcaggtcaatggaaaacaagagcccgatccagggtaacaggaaggcaaagctc<br>tatgacagatgtgccacagtgaatgacgtatggtggccctccagctcttgcagctggaacatttttatagtaataaaaattttaaatt<font color="green"><u>AAAAAAAAAAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCNNAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAAAAAAAAA</u></font>aatttgcaacagctgaaatatccgaacactgacaacttcctaaaggtagccatcatcatcttgactgcaggattggatg<br>tgtgccccacacagaggccctcgcacgggcctcccctcaagtcaccccatggtctcatcattactacagcactgaattgattactgtgcttatctgtaaa<br>gtatttaggttttctctattcaatttattctttccttttttttttattttttatttttgagacgaagtctcgctgtcgcccaggctggactgcagtggcg<br>cgatcttggctcactgcaagttccacctccagggttcacgccattctcccgcctcagcctcctgagtagctgggactacaggcgccagccaccatgccca<br>gctaatttt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TTC13:NM:024525:4/23	
0	chr1	230489757	230490069	1000496	0	-	10270; RIP_Alu_chr1_228_01	NA	NA	SINE	Alu	Yb8	ttaagtaaacacctaaatgtcatcccaaggagaattgctcaagaatttttattagtttggatgaattcttccttccttcctttctctctcttgttttaac<br>ttcttcaaaatttaatacacattctctgtcctggtttagtctttccactttccactgggcaataacagaaaacagcttgcattgtacactttgtttaaaa<br>aattgtttccaatgaagcaccaggagggaacattaggagtctgaggtccaatgactgcagttggcttatcaggccagttgcacaagtcagctccagtctc<br>tggacctcggtttcctgatctgcaaatggaatcagagttatagtctcccagcttcaccctcagagaaagcataaaacatgggttt<font color="green"><u>AAAAAATTACCCTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAATTACCCTTC</u></font>atcgagtgtttggaggttaggactgcagaaatgcatcaactgacatcatcttctttgagaactttaggagat<br>ttaatgatatctaattcaaccttactaaatgcttgcaaggtacatgaacaatagtgttacacagtgagagatcaccagcttgatttatttatatataaaa<br>tatattattgtaattataatacattaatattaacatattatgaatatattatatactaatgtattactaattatatactaatgtatgatgtaatatataa<br>caatatattaatataacagacattaatctacatagcattatatactatatattaaaattatatataaaaatataaatatataatacataatatatataca<br>ttaatatagtgta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	232653835	232654135	1000497	0	+	pAlu1-230962376; 239259; RIP_Alu_chr1_230_01	NA	NA	SINE	Alu	Ya5	taccctcctcacaagtttattttctatcatacgtgcatattaaaatactgcatattaatttaaaagagaaacactgtccgaggccttctccattacatct<br>cttagaaggtttgcaaataaaagtcacataatttcacaactcatctttggtcacgtataatggtgaaacttttgttttaaaatctaaatatgttctcaat<br>ttcctttttataatatctgtcttaataagcaaattcaataactgagtttaaatatgaagaaaataattatgaaatgagtctttctaaaaagtaagcattt<br>ttgaaaaattattttttgtgtccattagggttacccaaagtttactataaggaggcaaaggaagaatacatcacctgaccaaagataaaac<font color="green"><u>TGATGAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>TGATGAATG</u></font>actggatcatcgaagtggtcaggactaaaagacaccacacaggtacaatgagtgagcaagtcaatgacgctaaaggaggttgttctgtgt<br>aggtctttatcaagtcggataatcttaagatattattgtctaacagtgaggtcagccggtatttatcttttaacagtatacacttttctttgcattcctc<br>taaaactggccagactgcgttgcctaattattgctacaaaatacgtgaggcttttcgaatcttgtatttccacaggcatgattctgctgtatcaaaatta<br>tttttgacaactaaactctaattcatatttgatttttttctttccctctatcaaatctgtcacaaaattcagaatattttcccttcaaagacttttcatg<br>t	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TARBP1:NM:005646:9/30	
0	chr1	234121215	234121536	1000498	0	-	Yb8NBC485; 238508; RIP_Alu_chr1_232_01	TGTTCTTGCCAGAAAGTTTGC	CCAATCCAGGACTCGACATT	SINE	Alu	Yb8	tttgaatgataaacaccacattctggataaggatgatctctaggaagaggccatgggagaaacatatcaatgaagtctcatatccataatgttgtcattt<br>taaatgcaagtcttattttgggataatttatggaaaaattgcaaatgtagtccaaagagttcccatataccccttcgtcccattccccccagtgttgaca<br>tcttacataaccatggtacagaaatgaacataactcagaaattaacactggtacaactaaacgttagattttattcagatttcaccagttttttcacaaa<br>cgccctttttccatttcaggatccaatccaggactcgacattacacttagcacacctatattgttttatatgtttgaaaagttt<font color="green"><u>GAAAAAATGTTGGCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAGAAAAAAAAAGAAAAA</font><font color="green"><u>GAAAAAATGTTGGCAA</u></font>actttctggcaagaacagaaacttcattatattgctttctggccattattggagggaacata<br>gtgcttatgagggaggctctggagataagacaagcaatccagcttcaaattctggctcaagcactctctagctgtgtgcttaatctctctgagcctaaat<br>ttcctcaactcaaaaatagggatgataacagtatgtaccacttaggcttactctgagatttacatggattaagtcacacaaggcaactagaaattgtgat<br>caagaaatgttagctattattattaattgcatatgtaattcacaacacaatttttctaaaaatagctcctttgagagtctctggagtccatcttaataag<br>aaatcacaaccttcattgtaaa	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	58	433	95	NA	intergenic
0	chr1	234661563	234661873	1000499	0	+	52547; RIP_Alu_chr1_232_02	NA	NA	SINE	Alu	Yb8	ttgagcttcctttttcgagtgatgccgaggaaaaacatcatagtgtcctagtgtcaaaaattaaagtctaagccaggcatgcttgtggtcccagctactc<br>aggaggctgaggtgggaggatcgcttgagaactggagtttgaggctagtctggcaacatagcaagacctgtctcttaaacaaaacaaaacattaaggtct<br>gacatttcaagtgcaatttcagaaagaaccctttacttttagttatttaaaatcaataccccatctactagaactattcaacttctacaacttattacaa<br>ctggtatttattgaggatatactctaagaccaatctgaactgggtattcttggacataaaaaatacaggaggaggaggtggaagtt<font color="green"><u>AAGACCCCAGGCAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGACCCCAGGCAG</u></font>accttatagacttgttggagaggcagtgcacacagtttgattctcggatgtgtgtaaggctcagatgtgtaaaca<br>atttccatgatactttaaggaaaacatttcctaggacctttatcaatcaataaagttttaattactttaacgacatgcataagcatatggcaaatgaaga<br>taaagcaaaaatttgttccagctgggtacggaggctcacacctgtaatcccagcactttgggaggccaaggtcagcaaaacctgaactctacaaaaaata<br>caaaaattaaccacacctgtggtcccatggtcccagctgctcaggaggctgaggtgagaggatcgcttaaacctgggaagcagaggttgcagggaatgga<br>aatcgtgccac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:EDARADD:NM:145861:4/6	
0	chr1	239216497	239216804	1000500	0	-	pAlu1-237446358; 15544; RIP_Alu_chr1_237_02	NA	NA	SINE	Alu	Ye5	gctgaaaattatgaaaatacttgagttttgtaaaggatgcaaatcaaatgtgttctattttgcttgcttacagagtcctcatatcttatatttacaaata<br>ttttgcaatttttttcatgaatgcttaatatttttgtgcacctctaattcagatttagtttgtggatagctgtaggtgacacttgtagctgaggatgtgc<br>tctaatcctggggaggggtgcagacgtggaccgtaatggaagtaatacaggcttaggacagagcctggtccaggcctttgcactctgcagggggcacagg<br>taaggaagctcgtttgccgttcagatccgtggcatgggtgaaaaaataatgttgaagtttaagatcaatttaacatcatgttt<font color="green"><u>AATAATAGTGGTGTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AATAATAGTGGTGTTTA</u></font>aattacatgccagtagaatattctttgcatgaaggatactattctttttaaactctgtgaaaatagaatttgggg<br>aggggagtcttgctatttattcattcaatcttttgttgaggggtgggcacaacaggcttcctggagtagataatgtttgaattgaactttatggcctcag<br>ttgggattcaccacaggaaaaagagatgaagatagaagagcattagcaaaatcatggaaggaagaaacagtatagcaggtagaaaactatgagcagtgtg<br>atgaggaagaattctgcttgtttgtttttgcttgttttcattttaaataatatactgctaggattcgacagtaataaaacctctactgcttctgctgagc<br>agacggag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RGS7:NM:002924:3/18	
0	chr20	2462992	2463089	1000501	0	+	19981; RIP_Alu_chr20_002_01	NA	NA	SINE	Alu	Y?	gttcagtatctgacttccaaacttggatttttgaattccttagaaataattgtggaaagcagggtttgttgtgagagagaagaaatctgccaattcctag<br>atcactccttcagacaccaagggctaaacccagccaccagacagcaaaaacacatcagcccctgaggacaagggtctctgtttcatttgctgatgaatcc<br>ccagagccgagaactgactctgaccccagtgggtgctcatttttatctgtgaggagaaaagtggagttatcgactgtgtggacagtcaggtacaagggaa<br>tttgatagtcctatctggagggaatttctctccggagatgaaggtgttgtagaaagcctttctcctctggcaacagagaacaac<font color="green"><u>AAGAGCAGGGTAAAGG<br></u></font><font color="red">CAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACGCTGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>GAGCAGGGTAAAGG</u></font>gctgctgggggtcctcactcatcaggggagagcgcttggggcacccccagcagaaaccttactcaccagtcctctgggccacgctg<br>tcctgtggctgcacagctgcccgtgctgcttctcacatggaccggggtcctgcactggcatggccctggtggggagagggatttgcggctgcagtcctgc<br>agtatggatgccagagaatgcaactgagatcctcccactgccctcatgccccggggactggggcggccctgcaggaaccagttgggtcggagatcaaggt<br>gtgggacaaagagaaaagcttcaaagcttgagatgaaccgttgcacgtgcattttagaggtagctcctttgccccttccctcgccaagcttgcatgag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr20	11465279	11465588	1000502	0	+	79712; RIP_Alu_chr20_011_01	CATCCCTATATTACCCACTCCAGAGC	CACTCACTATCTATCGTCATCCAGC	SINE	Alu	Sx	agagctgtgatcataaaagctaactaaatactgccatgaaacagctaggatttggatgcagaaacagagtgccagagaaacactaaacaaaatgacaaac<br>cacagttaggatctcaggaattgagaagatggacctgtctggcagctgaaaacattgatgtccatcattaatgcagagtcaggacttcccagagacgaaa<br>ttcttctgcaggaaaaagggtgcaaccatcagcctctgcccttcctccatgtgagatctctttctcagtctccagggaagcaatgtccttttgcttccta<br>ctaaatacctggacctctccatccctatattacccactccagagcaatttgcacagtgctccacactttcccctaattccttctctt<font color="green"><u>CAAATTCTGTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACAT<br>AGTGAAACCCCGTCTCTACTAAAATACAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAATCTCAGCTACTTGGGAGCCTGAGGCAGGAGAATCGCTT<br>GAACCCAGGAGGCGGAGGTTGCAGTGACCCAAGATCGCGCCATTGCACTCCAGCCTGGCAACAGAGCGAGACTGCCTCAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>CAAATTCTGTCTT</u></font>acgtgcaaacttccaggatttagctgtccgctggatgacgatagatagtgagtggattaataaaagctatactccta<br>gcaaaatgttttgttagatctcagtagcaatgcctcaactgtacaaatgtgcagactttcataattgcccttaagtattcactaatcctggaaatttcaa<br>gcaaagtagctatctctctgtgtggagaaaagatgttaagttatttgaggttttcagcatgctgaagtttacattataaaaggaattgctaattccacct<br>acacccttgaaggagggccatccattaacaagagaaagcaataccttagggcaaagtttctgcctatctgcaagggaatataccaattactaagacaact<br>ttatccccta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr20	22603338	22603650	1000503	0	+	15678; RIP_Alu_chr20_022_01	NA	NA	SINE	Alu	Yb3a2	actggtttctttatgctgtcaccatcatatcatttcatccagtaaatgttttgctgtgtaccactaaaatataagaagtcatcttaaaaaatataatcat<br>atcgactggataaagaaaatgtggtacaaatacaccatggaataccatgcagccataaaaaaagaacaaaatcatgtcctctgcagcaatttggatgcag<br>ctggaggcccttatcctaagtaaattaaggcaggaacagaaagccagtagttctcatttctaagtggaaactaaacattgggtactcatggacataaaga<br>agcaacaatagacactgggcactgctagaggtgaggggtaggcagggggtcaaaattgaaaaagcaactattagataccacgctc<font color="green"><u>AATATCCAGGAAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCGCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AATATCCAGGAAATG</u></font>ggattatttgtaccccaacctcagcatcacgcaatatacccaggtaacaaatctgcacatgtaccccctgaa<br>tgtaaaataaaagttgaaaaaaatacaatcttaatactattactgtatgtaaaataatgagcaacaatttcctcagtatcatcaaatatccagtttatgt<br>ttatatttccaattgtctcataaatatcataatctttttttagcggtttctttaaattaggagctaaattacctattgcagtgagttgttttcaatctcc<br>tttaactggcaggtgtcctccccaactctctccctttctttctctttgcctcacactccactgccctgacctccttttctccctatctccccgtctccat<br>tctttgcaactca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr20	37771062	37771183	1000504	0	+	pAlu20-38975973; 15950; RIP_Alu_chr20_037_01	NA	NA	SINE	Alu	Ya5/8	aaatttttataccattcagcagtagaggagaaaaatatctcttaagaatgaggtgtaagaggtagacagcgctgtattgaggtggtactgccactctgac<br>agcaactgagtatatgaagtttggcaaaattcccatcccaattggggagctaccaagtcatcacacatgcatttctgttggaatcattttatttctaccc<br>taaatgataatagaacatatggatttggggatagcagagatgaaagccatttcttccttgtaagtttccactgagggattgtactcgccaaagaagtaca<br>aatgcattttagatctacaatcatttatcaattatcaaacacctatcaaaatcatagggttggctctatattatgttggaagaat<font color="green"><u>AAAAATATGACTCGA<br></u></font><font color="red">GAACCCGGGAAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATATGACTCGA</u></font>acaggcccttgaccttggtggactttaagtgagggagaaataaattatcccagatatttgcaa<br>tgctagaaagagatgcaaagctaagatgggtaaagaagaagtagtaattaacaccttgaagactatttagcagttctccaagaatataagtagaaaacat<br>acacgagagctctagggatacagaaagggcatgaagttagtgttaaacaggcctaatcctggtttctggagtctgccctttggcagagacttctgtgttc<br>cactgaattgtctgttttccttttcttccttaagaaaaaaaaaatctcaattttatttagaataacactgaccactagaagtcaacattttccaaattcc<br>tttgcattttggtgtggtcatg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr20	52726073	52726372	1000505	0	-	pAlu20-53930983; 55626; RIP_Alu_chr20_052_01	CAGATTGGTTGCTGGCACTGAAC	GCTGAGATCCATAGACATGTACATG	SINE	Alu	Ya5	ggcagagttttatagtgaagattagaatatttgatataccaggcactgaagggaggttttctgtgctgagatccatagacatgtacatgattagcctcag<br>aggggtctgtgatcttgtagatcatcttacgatttaatgtgcacagctgaatttttccaaagagtgtgttcgagaaatatttgccaacaattcctcagtt<br>gtggagaagtgggaaatgccttcatgaaggttcaagtctaatgaggacaatggaaagtgaagagacaaaaaaaaattgggttcactagacaaagggggcc<br>atggcaagggactcccactcaatcttgagattcaaggaattaacttttgagacaaaacacaaggaatggttgggacttaaccaggt<font color="green"><u>GAAATTAGGAATCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>GAAATTAGGAATCA</u></font>aaaaggttaatatctagtgacctagaagactctatctaagaacagcagaagaggatgcaagatatggtgtatgcccataacagccc<br>acctctgcagccaggacccaaactctcaagggccaactctctttgctctgagaggtcagaacaatcattttcccataagtcagagcttgacaacagtcaa<br>gataccaaataggcctacaagagcagcgtccacaaaaatgcatcactagtgttcagtgccagcaaccaatctgtccttgtgcaagttattgaggacatga<br>aaatatcacagggagacccgagctccaagcgcttgaagcagtcacattattatgcactgttcaaagccttgcagaaacaaaactgagaccattctttgcc<br>	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr20	53896642	53896944	1000506	0	-	31590; RIP_Alu_chr20_053_01	GTCACTTCTGTCTTGGGGCTTATGG	GACTAGGAGGTCATGGGCTCTCATG	SINE	Alu	Y	ttgggtggaactctgccacgtggccacatctaactgcaagggaagctgggaaatgtagtctggccatgtgcctacagactaggaggtcatgggctctcat<br>gggcacatggcagtctaagtaatctatggtcactcttctctctgtgcgctaattgtccttaaaggctccatgtgtattttttcacagggccattgctatg<br>aacctatagacagaacccactgccctgatctggtcaactgttacttttctttggctatcagttcatgtgtcactcccccagggaacacttccctgatcgt<br>tcccccagacatacctcaccaactagactcttccttgttatatgctataataaaacctcatttcctccataccatctatcttcatt<font color="green"><u>AAAAAGAATGCCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAAGAATGCCCA</u></font>catttatgtgatagttttattattgtctccttaaccattagaccataagccccaagacagaagtgactgttttgctcatattg<br>tattcctaagaatctaggcaatttctatagccacttaataaatatttgttatatagatatatgtgtatatatatatatctctgtgtgtgtgtgtatatac<br>atgtatgtacacatatatatatatgtatattagaatcccatcagtagtttcaagcaatgatatataaattacactcttattctgggactgctttacaaac<br>tgtcactgagtttctctggagacaattgagaagtggagttgaaaatattcctttcaacacataaacagatttctttttgtagatctctctcattatgttt<br>ctt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr20	57219307	57219515	1000507	0	+	Yb7AD42; Yb8NBC479; 2907; RIP_Alu_chr20_057_01	CATCCTGTTTCAACATCAGCA	GTTCCCAGCAGGAATCTGAG	SINE	Alu	Yb8	gccctgagcatgaggctgtgtcagctgcagcagggacacctgctcctctctccccctccacaggggacacagttcccaacgtgttccatggaagttggca<br>cccctgcctcatctgcagcttatcctgcatgctcatggtgaccctgggggcctcagtgagcagagagcccagaatgaaaagccctttcaccccttcttcc<br>cttcagcctcagggaagggtcctgcacgctcaccccatggactaatggaggagtcccagagatcctgagctccctccatgtgggggaaatcccacttcca<br>taaacatcctgtttcaacatcagcatttcattgctttcttcacacctaaatcccaagagcaaactgggggcaccaatgaatggtgaataaaac<font color="green"><u>CAAATCC<br></u></font><font color="red">CCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACC<br>CGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>CAAATCC</u></font>aaggagaaaaaaaaattcagaaacaaaacctgaatatagatctaagaaacaagtggctttccatagctcagattcctgctggga<br>acacagctccaccaccccatccccttacataggtaataaggccccagcaacagcctggaatggtgacaaatatctatgctttcatgtttgttatttgagc<br>atccagttgaaccaggggcctaggtccctggctcccattttcaaaggccctcctctccagcaattaggaaggacatggagaatgtccactgcagggcagc<br>tgtgagctgcaggatgtggtagaagccctagcccagagaatatcaatcactgcctgctccttattgaagtgtcagagagggaaccgggaaggctagtagg<br>gcaaaccag	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	NA	NA	NA	intron:ZNF831:NM:178457:3/5
0	chr20	60004034	60004338	1000508	0	+	13096; RIP_Alu_chr20_060_01	NA	NA	SINE	Alu	Yb9	caagaaagtgtgcaaggccgaggaaaacagcagtcgagagaaactgaatgtgagatggcccaggtgttgaacttgacaaaaaccttataaaacagcttta<br>ataataagctcaaagaattaggggaaatataaactgtaaaaaagaactagatggaaatcttagaattgcaaaataagttaacaaaatggaaacttcaact<br>ggagatggcagaaatccatctgccaaggacctcgtagacacatcagtagacatcttccagtctggaaaacaaagagaagacagactgaagtccaggaaca<br>caggctcaaagacctgcagggcagcatcaacaggtctaacatacatgtaactggagccccagcagaagaaagtaagattgaaatgg<font color="green"><u>AAAAAAAAATTTGA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAAAAAATTTGA</u></font>agaagtattagccaaaatgttccaaatttgatgaaagacactgacctacagatctgtgaagttcagagaacctgaaacagg<br>ctgaatatcctgagaaccacagcaaaacacaacacagacaaacctctaaactgaatatccagagaaccacagcaaaacacaacacagacaaacctctaaa<br>aaataaagaacatctcaaaacaaagattgaaagtcatgccagagacatgaagcataccacgtacagggaacaagcttaaaaattatagcaggaccagccc<br>atgctacatggtgagaccctgtctctacgaaaaaaaaagaaactacaaaattagccaggcatggtggcacgcacctgtagtcccagctactcgggaagct<br>gaggc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TAF4:NM:003185:14/15	
0	chr21	29523697	29524027	1000509	0	+	54074; pAlu21-29522172; RIP_Alu_chr21_029_01	CAGTTGTTAACCTGGAGTGCACAC	CGGGTAGCTCTTTATAGCTGTGTGAC	SINE	Alu	Yb8	cttttgtaaaaacgaaaataagacataaacaaataaattaattacaaatttgctgtgagaccaaaataccacacagcccccaaaagctgagatagtcact<br>gcagatattgaagatctgcattctaaaccacatgttttatccccaatgttcagctcaatgtattgtgcttggtagattcttaattattatttgttcagta<br>acaaatataatgatcaggtctttgcaggagtattaaattaaaatttgtctgttacactttaatggtcagttgttaacctggagtgcacacaaataatgat<br>agatcagcaaggagggtctaaaaaccacatactaggaagtccaatggaagaattaggcgtgtacagaagagaaggttaatttattaagaga<font color="green"><u>CCGGCTATT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAGGGGG</font><font color="green"><u>CCGGCTATT</u></font>ttattatagattgtcttattctgtcccaagggaagtattctaattgatgttatagggagg<br>caggtttaaactcagtattaagaagagctttctataattaataaaagacaatgatatggacttgtattagtttgttgtcacacagctataaagagctacc<br>cgagactgggtaatttataaagaaaggagttttaattgacttacagttccacatagctggggaggcctcaggaaacttataatcatggcagaaggtaaag<br>gagaagcaagcacctccttcacaaggcagcaggagagagagagaacaaggtgggaagtgccacactttaaaccatcagatctcgtgagaactcactgtca<br>tgaaaatagcagagggaaacccgcccccatg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C21orf109:NR:027072:3/4
0	chr21	31014759	31014992	1000510	0	-	Yb8NBC208; 10869; RIP_Alu_chr21_031_01	ATCACTAAAGAGACTGTTGGCGTTT	CCATGGAATGACATCTAGGTTGTT	SINE	Alu	Yb9	cctcctgagtagctgggactataggcatgtgccaccacattctgctaatttattttattttattttgtagagacagggtctcattatgttgcccaggcta<br>gtctggaactcatgcccttaagtaatcctcctgccttagcctcccaaagtggtgaagttacaggtgtgagccactgtgctcaggtaccaaattttagaag<br>cttttttcagattgtctaagattcaatcctcactgagcatcttaaatatagattttcaactctcatgggcaagaaaataccatatttaggttgagttgag<br>actaattttgtaattgagtcccatcaaaggtttattttcaaaatattcagtttaatctaggcaaaactgcttacccaatggttatttt<font color="green"><u>AAAAGATGACCT<br></u></font><font color="red">TCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTGGG<br>GAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCG<br>AGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGATGACCT</u></font>gtttgacttaatgtggcctatttgcttgtgctgtataaaaacgccaacagtctc<br>tttagtgatttggaaacttgaacactcataagattttcatatttgaacatatactctaagacgataactttcaaaagaacttaaaagttatttctcaact<br>taaaaagttattttgttacacaaatatgttagtttattgaagaatgtcaagctggttttctttacacagttgtcctcctaaggataattaaaatgctatc<br>atggcgttccagtttgtactcctactacaatacctggcatttaggtgcaagtaaaacttacagcgcatatgtaaattgtgaatactctgaaggtgttttt<br>attttatagtgtttgatagcacattttaaaatct	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	357	111	NA	intergenic
0	chr21	39266187	39266498	1000511	0	+	19513; Yb8JW664; RIP_Alu_chr21_039_01	CACTGAATTGTGGCATTAGGAA	CTCTCCTGCCTCTCTACTTTGCT	SINE	Alu	Yb9	ctgactgaatctttggatgcccccgctccatccccatcttggcacattggatacacaccagtcccgtcattgagtactgtctctcttatgagacggaagg<br>caccttgagcacagagcattggcctggtcatcttcccacccctaagagtggatgcttcacaagtattagcaagataaatatctatgattttaaattccca<br>tcgtaccgccaacccatcttgtatgcatttctaaaaatgtattatcttgacattagaataccttttagggaagcacctgttgctgttttccaaaatatct<br>caatacagctgcttggggtggaaattaagaatatgaggatatggatcagtgtaaaagaaatcactgaattgtggcattaggaattatctt<font color="green"><u>AAGAATTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAATTTGA</u></font>gaaaggggcccggcacagtggctcatgcctgtaaacccagcatgttgaaaggcctaggtgggaggatcacttgagccc<br>agaagttcaagatcagcgtgggcaacatgacaaaaccccatttatacaaaaaatacaaaaattagctgggctcggtggtatgcacctgtggtcccagcta<br>cttgggaggatgaggtgggaggatcacgtgagccccaggagttcagggctgcagtgagccatgatcacaccactgcactccaacctgggcaacagagtga<br>gaccccatctcaaaaaatgaaaccaaacaaacaaacaaaaacagaatttgaaaaaaggaaaagagcaaagtagagaggcaggagagacaagggggcagag<br>agctgaaaaccg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	725	403	NA	intergenic
0	chr21	41324767	41325073	1000512	0	+	pAlu21-41323632; Ya5NBC243; 528; RIP_Alu_chr21_041_01	CCATGATTCGTCATTCACCA	AGGAGACCTGCCAATGAATG	SINE	Alu	Ya5	ttgcatctccctaatgattagtgatactgagcattttttcacatgattcttgcccacgttgtgtcttcttttgagaagtgtctgttcatgtcctttgccc<br>attccaaaatgagattgtttgttttctgcttgttgacatgcttgagttccttatagattctggatattggacttttgttggatgcatagtttggaaatat<br>tttctcccatttgataggttgtctgtttactcttggttaatcctcctacatcacacgcctaccttcaaaagtgttctgaattcagggcctccatgggatt<br>ctactgagcacatagacagctgcagagttgagggtcttcctttccatgattcgtcattcaccatcactctacacagttttgtcttt<font color="green"><u>AGAAAATACCTAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AGAAAATACCTAGA</u></font>aagctgtcattcattggcaggtctcctccgattctctttctggttgaaagagaatacattttttattctcttactttcc<br>ttataatagcaacttcagaggaagagataaaaacacatacgttccacctctcattctaaactggaagccactttctgaaggaatcaacttcccaaagaag<br>aatttcatttagttaattattcaaaagattcaactaaaataagaaaattccattcaatgacattttcttgggtatcactttgttcaaagtacagtgcttg<br>actaactcaggaatttacaagacagtaggatttggttcttgcccccagataatttatgttctgatagaaataacagacatttatcaacatgttgtaactg<br>tacattt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID:11042148</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	406	86	NA	intergenic
0	chr22	16663916	16664218	1000513	0	-	19250; RIP_Alu_chr22_016_03	NA	NA	SINE	Alu	Ya5	gcgcgattttggctcactgcaagctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacgggtacccaccaccccac<br>ccagctaatttttgtgtttttagtagagacggggtttcaccatgttggccaggctggtctccaactcctgacttcaggtgatccgcccgcctcagcctcc<br>caaagtgctgggattacaggcctgagccaccgcgcccagcccgcatctcctgctttctttacccgcccttgctcgagtgagaagaggtagtgagctgctt<br>tctcctctgggttcccggactgcagctactagctttttggatttagaattccagcaagttccagggggaaatgaaataaat<font color="green"><u>AGAAAAAGGAAACTCAGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCGGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AGAAAAAGGAAACTCAGGA</u></font>tgccttgtgaatcacacagtgccccaccactgacactcataaccctttgaaggtgggctcatcagctcatcacttccc<br>ctttcccagaccattatgctgcgtaaattcaagacttctcgggttctgcccaccacgtgggggctgctgcttgaaggggacgttccccactgcagggagt<br>ctcttgtggactttaggccctgttctcgccacgcccgtgaggacgacggcaatgccagaattaggtttcttttctgtttctgctcttgtgtcattcttag<br>agcacttagtaatattcgttaattggagggaaaatcacccttttgagatctggagcctcatatgtaaaacctggttgcccttgcccctctgtgcctgcat<br>ccc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:MICAL3:NM:015241:29/32	
0	chr22	31625773	31626076	1000514	0	+	pAlu22-31620226; Yb7-Yb8NBC125; 1089; RIP_Alu_chr22_031_01	AGCCAGAAACCCTGAACAAG	AAAGGCCCCAGAAGTATACCA	SINE	Alu	Yb8	taggagaagaaatccttttgtaagcaggagtgggactggggaacggaggcgttaatcaagtgagactttcatacaactgagaaaaggttaacttccccct<br>aaagaaggagcgtgtgtgcagggaatgaggggttggtccatgatggaggttatgggcccaccagtggcctctatatggctttatctagagcatttctgaa<br>ttcatccacttaaaatttaattaggaaaaagggttattctgcttaaaattaaattagcttggaaacaccacatataataaggcctggagttaaaatgctg<br>ggttcttgtcctggccctgaaactcactagccagaaaccctgaacaagtcaatttccctcttttgagccttcgttcttttacagtt<font color="green"><u>AAAACAAGGAAGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATATAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCGGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAACAAGGAAGTC</u></font>agatggtatacttctggggcctttattagctaaaatattctgagagagcgtgaccttctagtactgtctcccatggaactgt<br>cctggtgaaacccagagatcagctcatgaagatggacttgaggcaagagagagctgaaatgaaattgggcttgagttgccactcagcccagcaccatctt<br>ttcagatccttgttctgaagcagcagatcctcttcatcttttcagccctgaaggaatcccttacatccgggtcactgcaaagttccgggcaaatttcctg<br>acaaacttctgttcattttttaaaacccattgtaaatgttatggtcatttgttcattcaataaacatttattgaataaatactctgtgccaggtgttctt<br>ctaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intron:SYN3:NM:001135774:4/14
0	chr22	35457036	35457193	1000515	0	-	20709; RIP_Alu_chr22_035_01	NA	NA	SINE	Alu	Y?	ttgaggtgtcttccagccatccctgtgaggtgtcaagaaggctgttggagaagccagtctaggatgcagaagccagctgtactggagatagaaatcaggg<br>agttggcagggcacagtggctcatgcctgtaatcccagcagtttgagaggccgaggcggtcggatcatttgaggttaggagttcaaaaccagcctggcca<br>acatggtgaaaccccatctctactaacaatacaaaaattagccgggcatggtggcgcatgcctgtagtcctactacttggagggctgaggcaggagaatc<br>acttgaacccgggaggcagaggtggcagtgacctgagattgcgccattgcactccagtttgggagacaagaatgaaactctgtc<font color="green"><u>AAAAAAACAAAAAACA<br></u></font><font color="red">CACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAG<br>CCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAATAAAAAAAAATAA</font><font color="green"><u>AAAAAAACAAAAAACA</u></font>aacaaaaaaaacccacaaacaaacaa<br>aaaaacagaaatctgggagttattgatgtgtagccagcatgcgtgaggatgttcccatttgtccccaaggatctagacatgacacagggaggaggaggtg<br>aaggccctgtaatataatagagtcaggaatattttgtaaagagcaccatcaaagccatattaataggaggactgtgtgtgtttctcatgtcgatcaagct<br>gtgctgtcttggaaaatcaaatactttcgtgtttaccttgaagtaaatctaaagaaaccagccagtgccactgctgaagttgagacaccaagttgaaccc<br>aagcaccttccatgttttcccagcaacgtccctcggcctcaatttactcgtccataaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr22	40470438	40470746	1000516	0	-	14672; RIP_Alu_chr22_040_01	NA	NA	SINE	Alu	Ya5	cagccaaagtcctctttgccatacagcagagtatcagaaatcaagtgttgcctctagaacttcacccattgtctgaatcccttccacccctaccttccat<br>gctattacttcatacctcagagggcccctcacctgcaggcacttctaaatccctccagagtgctgaggaggaactttcccctttgaagaatggccttctc<br>tgaatctctactggaggcatggccctgaggtgggaaggagagacaggaacctagtgatcaagtatatgctgtgtctcagtctatgcttggatgactgtag<br>acctcttcttctcacactgcagtctgacattcccatacacctaactttccaagagatcttggctatatccttgcaaatagctccttta<font color="green"><u>AAAAAAATCATA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGAGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAAAATCATA</u></font>gcaaagctgggcatggtggctcacgcttgtaatcccagcactttgggaggccaaggcaggcagatcacaaggtcaggag<br>atcgtagccatcctggctaacatagtgaaaccccgtctctactaaaaatacaaaaaaaattagccaggcatggtggcgggcacctgtagtcccagctact<br>agggaggctgaggcaggagaattgcttgaaccccggaggcgaaggttgcagtgagccaaaatcgcaccactgcactccagcctgggcaacagagcaagac<br>tccgtctcagaataaaaaaaaatggtagcaggggcccagcgcagtggatcatgcctgtaatcccagaactttaggaggccgaggtggaggtcaggagttc<br>gagaccagc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:MEI1:NM:152513:12/31	
0	chr2	5405234	5405486	1000517	0	-	238888; RIP_Alu_chr2_005_01	NA	NA	SINE	Alu	Ya4	tgattctccatggccttgacaggtgcatggcctctgccctgggcagtgtggagtcagttcccttccctcactctaggattcccctacttttccaatcact<br>tccaatcctgcctttcaggtgtttagcagtgtacagagggctgggtgggatggcagaacccgggcactcctgttgacgatgcatccttcacttcctccgt<br>ctccttccctgtctcctccttttccattactcaagccagctgacctcagaacttcagaaaatgaatgtaaatgtatattgttctcaatatttctactttt<br>tctgttgtggaaacttcctttgtatcataatattctttttctttgattctccaaatgtagatccttactattttaaaagaagcatt<font color="green"><u>AGAAATTCAGAAGA<br></u></font><font color="red">CACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTA<br>GTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCG<br>ACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATTCAGAAGA</u></font>aactaagacttttttgtttagcaagatttgact<br>ttcagcctattgtccactatagaattagtagatcaaatttaatatacaaagttgcataataacttctttgctctggaatgtttctgtccttttctagtga<br>cacagatgtcctgatccgtttgtctggggaactgtagtgtaacatgattttggaaaaaacaggtcatataacatttaaatatcaatatatttttatgtta<br>tttatatagtatgtatatattatatataatacatatgaaataagtataaacatatattatatatatttatctttttctatctcaaaattttaaattcaat<br>gttattttaggataatatatatgtttatatattatatatcttaggtatttaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	21426299	21426588	1000518	0	+	Yc1RG72; 665; RIP_Alu_chr2_021_01	GTAATCTATGGAGGGGCCATTT	TTTGGGGAACTTAACCTGTTAGC	SINE	Alu	Yc1	ctacaaaacggctgctgttttccctctaccctctgtccaaaatttcctgagaatctcccttgtgcctattctatccagacatgtacaataaagggaactc<br>tgggaagtgtagttcagcctacccaagtagatacatcacaaagccattttgccttcttttttttctaagcagcagagttcttattctgataacattcact<br>gactctgctgtaggactagatataccagcacaaaagtaggctggtttgtgagagatcattcagtcaaggcattgtacataattaatcttagtagtttgag<br>ggcagaaagagtcagtcatcatttgcacaaatgaagaccttgtaatctatggaggggccatttcaattgctattctaatcacagt<font color="green"><u>AAGAATAAAGCAGAA<br></u></font><font color="red">GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAA<br>AAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTT<br>GCAGTGAGCCGAGATCGCGCCACGGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAAAG<br>CAGAA</u></font>attatgtgacttgtgccatttgatttggctaacaggttaagttccccaaatcagggcacataaccacttaattttttccatagaaaagtgaatgg<br>acatttttgatgacttggatacctgcttttgaatcaaaacacatagattttaagtatttgtctcaaatattctttcctcagaagtcattgaccatgcctt<br>ttcttgaagcctagttatacagaactaaagaattttcataggcataaacaaggaagaatttaaattaatgtgtaaaattgggtatcttaacttaggtact<br>ccactgcagtatgtaaatatcaaggtagcaaatatataactggatagtgttaggtatgagactgcaaagcaaaatgatgtatgtgctact	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	61	414	109	NA	intergenic
0	chr2	34887959	34888186	1000519	0	-	13032; RIP_Alu_chr2_034_01	NA	NA	SINE	Alu	Ya5a2	aagagcttcaaatggcctaacaacatgttttcctcctgactttgctcccatggatcacgtctcttgtcaagcaaccttccttatcatgggaccagcaccg<br>tgcttgcttatccctgaggagcaggtttcaattccttcccagcctgcagagctattcaaacaagctaatcacatccttccctgggattcaggggtcactt<br>tgccacagcttctacttgtccactgttcctaaatgcaatatccatgtggttcttcatggcatgcactgcccttccccccagactgtgagtggatgtgatt<br>aataattgctatctcatcttcctagtgtctagtgtagtgtgtgtgccattctctcatagccagagggtgtgaatccctctctcatc<font color="green"><u>AAAAGGGTAAGTTA<br></u></font><font color="red">TCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGG<br>GAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCC<br>GTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGGGTAAGTTA</u></font>ttagaggtgattaaaacaatggacaattttttttttttttgagactgagtttcgctct<br>tgttatccaggctggagtgcactggcacaatctcagctcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagcctcccgagtagctgg<br>gattacaggcatgtgccaccacgcccagctaatttttgtatttttagttgagacagggtttcaccatattggccaggctggtctcaaactcctgacctca<br>ggtgatcttcccacctctgcctcccaaagtgctgggattacaggcgtgagccaccgcacctggcaacaatgaataattttttaatggagaaaaaaaaagg<br>aataaaactacgataatgcaagtaaaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	38704938	38705232	1000520	0	-	Yd6JX90; 20509; RIP_Alu_chr2_038_02	TATTTGAAAACTGACCAGCCAAT	CATCATCCAGGAATAAGACCAAA	SINE	Alu	Yd8	ccgaggacaagaagtaatttggagatagccagttaaacgtttaccagcacacactgaatagaggcatgtgctgggacaaagagccgtgtacttagagact<br>tcaggatgaaaatgcaaatggacaaaaccatcaactccatcagtgggggcagcagaataccatgagtggcagagaaaggaacattttcattcaggggtca<br>tcatccaggaataagaccaaactagtccttccacagcagagaccagcaaagatcctggataccaactggatctgaagcccctccccctactgccccagaa<br>tgctgcaatccagtatcactgagctgccatcctgaggatgccactggacatctgtccccatgactcagtcatccagaagactgttt<font color="green"><u>AAAAGCCGAGACTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGAGAGGCTGAGGCAGGAGAACGGCGTGAACCCGGAAGG<br>CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAG<br>CCGAGACTA</u></font>tgagacttttgattggctggtcagttttcaaatagttggaatctagaatccagttctcatcttagattcacttttccaccttgacttttac<br>tcccccttagcgaggcacacattgtcttctggtgctcacaggccatagcagttaaagtggtagacatctatttgtttctgtctttttctccatagtgacc<br>agtcctgatggactattcacaatcgctcctccttggcttatcaggcctcatgcaaatcacatgctgtcccaaatgaccagtgaactgcctccgaaggaac<br>caaagtgacaggggctgtggagctgaggacctctctctaatccctccaggctgaaaaattaatggcccactttttctgatggtaaaataataatt	UCSC	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID:15008405</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	545	236	NA	intergenic
0	chr2	40831655	40831975	1000521	0	-	9004; RIP_Alu_chr2_040_01	NA	NA	SINE	Alu	Yb8	aggatactgtatttggaatcaaaatcctgggtgagaatttttgctttaccactaataataaaacctaagggagtgattgaaccaattcagcctgtatttc<br>ctatctgtaagagggaaaaataatgccttccctatgttactttcacagttgttgggtagatgtaacttagggccatggaagagccctaactctaaatcag<br>aatatctaagttccattcctgactctatcactgatgcccttcataaccttaattacaacacttttctgatcttttcctcatttggcttacttctaaatga<br>aaggctaagtcacatgtgtcttattgatattagtactttctagttagattctaaagtaatttcaaacttacagaaataatgtgaatagc<font color="green"><u>AAAAATAATTC<br></u></font><font color="red">CCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGCGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCGGGGTGACAGAGCGAGACTCCGTCTCAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATAATTC</u></font>tcatactttatgcagattcaccattttttaacattttgtcacaattgttttatcattcttccttgcat<br>atatatatacacacacattgtgatatgtatatatgatttacatagaaatatatatttgagaacattacatatatcatttccatttatacttcattatgta<br>tttcctaaggtataaaacttacactaacttcactgaagtattcaggtttttaatattttaactataagcaacacatgtgaattatactgtgaaatctaaa<br>gcactactaaaattataaattgtttttcttaagaaactagcccaaaaatattttataaaagagctagctatttttcaaataaaagattgaacctacattt<br>ttatagatttggaaacattgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	44637106	44637412	1000522	0	-	Yb8JW684; 3922; RIP_Alu_chr2_044_01	GGTAGCATCTTCATTGCAAAGTG	CCACTGTGCCTAGCGGATTA	SINE	Alu	Yb8	agtggacatttctctgacaaataatacttggaaaccacattatcattaatgatgaatgaatcctatgtctagaaaagttaataaacaaggcatttcctca<br>gtgaaaagagttaaagcaaaccacataggtgaaagtaaaaaagataaaacttttgcatgctgttgcattccagcagggagtgggtagttcctgtgcattt<br>tctccctgaaataaacttacatcatcctcacttgtatcattttgtaaattttttttgtagagacggggtctcattatcttgccaggctggtctcaaattt<br>ctgggttcaagggatcctcctgcttcggcctcccaaagtgctaggattacaggcgtgagccactgtgcctagcggattaatccttt<font color="green"><u>AAAAAAAAAAAAGA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAAAAAAAAGA</u></font>aagaaaaattggctggacacggtggctcatgcctgtaatcccagcactttgagaggccgaggcaggtggatcaccagag<br>gtcaggagttcaagaacagcctggacaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggtgtggtggcagccacctgtaatcccag<br>ctgcttgggaggctgaggcaggagaatcacttgaacctgggaggcggaagttgcagtgagctgagatggcgccactgcactccagcctgggtgacagagc<br>aagactccatctcaaaataagtaaataaataaaaataaaaaataaaaaaaattgtaggtatttttaaatagcctttcactttgcaatgaagatgctacct<br>ataacac	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	740	420	NA	intron:C2orf34:NM:024766:3/11
0	chr2	54546999	54547246	1000523	0	+	13482; RIP_Alu_chr2_054_01	NA	NA	SINE	Alu	Yc1	actgagtggttgtttgaagaagctttcaggattaattgtgctttgacatataaaaataagatgttatcaagattgctttaaaactgacccttgtttatag<br>gagtcatacgtccattcttaagaaactctcaactgtgacagtaaacatctgagtgatttttagaaccattttaatatctctgctctagaatcgagaatgc<br>cctgttagttctgatttttaatatacaaatttgaagccactagttaggcagtaaaatatgtattagaacataactatagatttttacccaatagatcaat<br>tagtatgaaatttaggatgatatataagtacaacagaatttattcctttgaggtatgtattttcaaagtgtaatttgtgtaatt<font color="green"><u>AAGTATGTTTATTCTT<br></u></font><font color="red">CGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGG<br>AGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGAAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCG<br>TCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTATGTTTATTCTT</u></font>agaaagttcatgagcctattaacattggttatcttg<br>ggtaatggaattgcagaagatttcatctctgtatatttttttctccatattttttaagttttaggaaataacaaattcttgttctttatcaaaaatatcc<br>taacacttctgaccaaacctcattttagctggatacaaactaatcaaataatttaccagctaaatatactttctgctgttcaatttttttctaccaaact<br>tacggaaaagcagtattaataatgaagatataaagaacactgaaatttttgaaagatcttttcattccttgtttaaatgttcatttttgttacagccttg<br>gcagttcattacttatgcagagtgtgggaaaagctctaagaactggcc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SPTBN1:NM:003128:1/36	
0	chr2	57196248	57196560	1000524	0	-	18879; RIP_Alu_chr2_057_01	NA	NA	SINE	Alu	Yb8	tttctaccaacagcctacatataacaattaaagtattctctgagacaataagtttttctcctgtgctcctcacttcctactgcaccctcactagaaaccc<br>tttgaatgcccataaactaactaacattctgttcaagactccccaggcacttctataatgtttcttaaacttctttcagcctctacccattacctaattt<br>taaagccacttccacatattttcgtatgtgctatagaagtaccccactttctagtactgatatctgtactagcttcctattgctgctgtaacaaactgcc<br>acataaaaagctgccaggaagtaccccactttctagtactaatgtctgtactagtttcctattgctgctgcaaaaaactgccacat<font color="green"><u>AAAAAGCTACTAGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAGCTACTAGC</u></font>cccgggagaggggctgatgtatgcaaagtgcagagaaagagagaaagagatagatagagagagacagagagag<br>agagagagagacattgcctggtgttcaaatcataaggtggatcttagcactactgcaaaactagttatgaggctttaaaaaagaatgtacaatgagtcat<br>gtgctcttataatttaaaaattcataattagaggcatttgtgattgtgtgttgcaaaggaatccctcaattagtcttatgtacacctcagtccatctcat<br>aaaaacattagggaaacatttctaccctactaaatgattctataaactgaaaactgaaagttagtttttatatttttttaatattttatagatctttaaa<br>aagttaagtgtgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	65661024	65661321	1000525	0	-	pAlu2-65765124; 18653; RIP_Alu_chr2_065_01	NA	NA	SINE	Alu	Ye5	gctttcccatctcttctcctcatgaaagttcccaatatgtatttcaagtggcacagggctcttgagaggtcaacgagttgcctacagcattggtcaaatg<br>ccaaatcaaatatgcatccttcttctgaaactcccctgccctacctcagtcccctgtccctcaccccagcttcctctcgggctctgctttctggtaaacc<br>caggcggctgagctcagattatctgaggtggcacattttaatggtcggttcttattgctcttcctttcccttttctctattttctaattattcttacaat<br>aaacacatcttaatctcacaattttaaaaccttttttttccccctcaagcctataatcacatctccaaggctagtttacctatgttat<font color="green"><u>AAAAGTAACATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAGTAACATG</u></font>atattaggattaggggaaagtgcaggcatgtgacattaaacattgctagcaaaacacatacccaacacaggtatgggtagtggggagcag<br>gaagtcggagagagggagacagttattcttcctgattgtttctggatgttctacagccagctctgaggctgcttctcagaagaggaaagaatcctgtgga<br>gaaagaaaaggaggcagggaggcagggatggagggggagaaggaggatgggcatcctgtcttcctttgttctccagcctggttccctgagacagtgggga<br>ggagggccccttctgctccaggccttttgttcagcagaggtgctaactggttggcaggcccaggaaaaaggcagactcagaggggagcggagaaggct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	78911167	78911491	1000526	0	-	9831; RIP_Alu_chr2_078_01	NA	NA	SINE	Alu	Ya5	atgatggactgtgtagatatttgcattgtggaaaatgaacttaaggaaatcaccaataaaaatacaaaagatctgataggattgaaattgtaatcaatgt<br>cggtaattaattcaccataaaggaaataccaggagagctaaaatcaattaaagagatgtctaccttattgataaatcagagaaatcaaaattatatcaac<br>cctgaaataccacttcaaactcagagtgggaaaaaaatgtattgtcaactattgagaggtagtagagaaatggaagttctcttgttatgctagtgggatg<br>ttaatgagtgtgttcaatttataaggaatgtggcatttcctagacaatgaagtccagtgttgtcaaatctatcctacatgtgtaacctt<font color="green"><u>AAGAAACTCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAT<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACTCAT</u></font>acactgacgcatggagatattcacgagagtgttcattaaggatttgtttgttctagcaaagttg<br>aaatacgtcttgtccaccaaatgaaaagaagaatgtgcctgtccttgaatatgacacagtttttcctgaagtaactttaaataaatcttgttaaacatta<br>taaatatgaaaagtaggcaacaaaaggagacatatagcacaatcccaattactaaagtatgagtattcaatacagagtgtgggtctataagaaaactggt<br>gatgttagaaatggacctgcaggtgcaggataaatgagaaacactgataaaataatgatagtgacttattaaataaggataatcattagcacaattctca<br>gtctctggaatccttaagcaaagga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	84611965	84612244	1000527	0	-	238297; RIP_Alu_chr2_084_01	NA	NA	SINE	Alu	Yc1	aaactatgaaaacattttcacatatgaatcaagaattatgttttaaaatcaccaaataacccactttccatcagtttccacttaagatctacaagttctt<br>caccaaaaacttacaaagaactatacaagcgagtaaagtagtggtaggaatgacaatattattaagggttttttttaattgaagggctttaaattacatt<br>atatgttaattcttccatcttaaaaaaatgaattctctcatgttggaaaaatcctctttttttaccccaattctccttcgtctaccatctcttctccttt<br>tgacatcccaaaattaatgtatccgaacccaaacatgtatttttccctgatgattctgctccattcagtcttctatgtctcagttgt<font color="green"><u>AAAAGGAAAATAA<br></u></font><font color="red">GGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG<br>GCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGC<br>CACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAAAAAAATAAAAAATAAAAAAA</font><font color="green"><u>AAAAGGAAAATAA</u></font>atcttga<br>ggcccccaaatcactaaacgaaaggtaaatgtcaagctgggaactgctaatggcaaacctgcctcccattctattcaaagtgacccctgtgctcactggg<br>ataaatgcatatctcattgcctcatttggaaaggctaatcagaaactcaaaggaatgtctctcatctacctatgacctggaagccccctcctcgctttga<br>gtttttccatcttggccttgagttttcccacttctccagactgaacccatgtacatcttacacatattaattgatgtctcgtgtcttcctaaaatgtata<br>aagccaagctgtgcccgtactaccttgggcacatgtcatcaggacctcctgaggctgtgtcatgggcgtgcctccatgat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DNAH6:NM:001370:4/77	
0	chr2	102688929	102689250	1000528	0	+	2565; RIP_Alu_chr2_102_01	NA	NA	SINE	Alu	Yb8	atttccctttgtagagatctccattccattctggaagggatttaattatttcaagttataatagttatagcccctcacaaagtaattttggaatcagaaa<br>ttaaaattctgatttttaacatgaagttttgctatacaatttttaatctttaatatacaataagtgccatttgtatagtttaagtaagattttatatttc<br>ttttacaggcttccacttcaacctcccgatatttatccttacctaaaaatacgaagcttccagaaaagctacaaaagaggaggactatttctattgcagg<br>tagtgaatatagttggagcagaaaaattttaaatttatttgccaatgtttataaactagacaaattttcctattatttttcttcatt<font color="green"><u>AAGAATGAGTTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAGAAAAAAAAAAA</font><font color="green"><u>AAGAATGAGTTCC</u></font>aatgagaacacttggacacaggaaggggaacatcacacgccagggcctgttgtggggtcggggga<br>gtggggagggatagcattaggagatatacctaatgtaaatggcgagttcatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgc<br>acattgtgcacatgtaccctaaaacttaaagtataataataatttaaaaaaaagaatgagttcaagagtttgcaaatctaaaataataactgggtgaatt<br>ttaattcgcattgcaaccttttggaatggcattctgtgcagattctaaagaatccaatcagttattttccagcaaatattgtcatcatggggcccaaggg<br>caggtaaacaaaaagttgtaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SLC9A2:NM:003048:11/12	
0	chr2	116903597	116903598	1000529	0	+	16722; RIP_Alu_chr2_116_01	NA	NA	SINE	Alu	Yb8	gtagaaaaggtataaagtcattaatatcagataaataaggacagaaaaactataacccaaatatgacaagtgaagagtggaaatccacaaagcatgagag<br>agagtactaagtcagctatcatagtaattaattaaagacaaaaatcctaaccagctggtcaaatgagtccaactactttctgtccacaatccctaatacc<br>caatggcaatctaaaaaccaaaagctgtaccataaatgatgtgaactacttgcttggggtcaggtttagttcacacacagattaatgagaaagaaggaga<br>gagcttcaggaaggtctagacaggataagaaatggagtggggaggtgggagagaagccatttcattcatggatgaaatttacttatgt<font color="green"><u>AAAGAAATTATT<br></u></font><font color="red">CCTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG<br>CCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATT<br>GCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAATAAATAAAAATAAAAATAAAAATAAAA</font><font color="green"><u>AAAG<br>AAATTATT</u></font>cttattttagctgctagagggtgtcctaagctttgatgcgagcctcatactaatagaccttgagtgaacttaacaaaaccattcttcatttt<br>ttacacatagcatttgattatcccttctacttaaacaaactcatatcagcaatctaaaccaatcactaagaatcataggctatttgaaggaaacaaatat<br>tgttaaagaaaaaaaaattaagaaatcagccaaggtgccaagaaaagatgctaaaaggcaatccagggaataaaggagattttaataaaatatatttgct<br>agttatgagaaatttgagagattattgaaaccagaaaacaactataaggattaagaaaatgaaacaatcagaaagaattatggacaaattgataaa	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	118622615	118622751	1000530	0	+	17954; RIP_Alu_chr2_118_01	NA	NA	SINE	Alu	Ya5/8	attcaacccagtacacttacaggtctctggaatatggatctattactttttgtagggactcatatctctgctccctaactcaggttttacaagaataaag<br>ttttacagaagtacatcccccagtctgaaatctggaggagttcagaatttgagtaactgggtctgtccctggtattgctataattaggttacctttattc<br>ctttatgaatcattaactttgaaaactgctggttctatctgtgacaaccagtgatacatcatctttaaccagtctgtaccaccataaaaaaaaatgttgc<br>ttaagtcctaatttattgctccacgacacaaatggtgcatctcttacaaactcagccaattttaagggtgatttctgggctgctt<font color="green"><u>AAAAAGGCTTCTACT<br></u></font><font color="red">TGGGAGGCTGAGGCGGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGAC<br>TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGGCTTCTACT</u></font>gccagcttttggaaaatcttgctttagagattattattttctgtttca<br>ggacaaatccacgaatttggcctattcatgttagctatagtgagatgatgcctctcttgtccataaaacttgaatacccgggtgtcataagtgatttttc<br>tgaagttaatttttcccatactttgagttatcagtttctgacgtgctggtgtgcatttcagttgaggttttattacattgtgttggcagcacattatgtt<br>ttttacacatggatttgattgagaaatgaaactggaataagaatgaggtagcagcagcatctgctggaagactcaactattgctgttgtcaatcagcctg<br>attgattaaatatggtgatacacatctttattaaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	134260762	134261076	1000531	0	+	7365; RIP_Alu_chr2_134_02	NA	NA	SINE	Alu	Ya5	gatagtgtccttgtggggcaaggatcaccattccaatcaataagtatcaaccttggctacattttgaaatcagatgaggagcgaggggagacatactgcc<br>attccacctccaagaaattctgatataacaggtttaggctgaggcctggacaggaaaactttaaggactgcccaatgcttctcaaatccagccacaatta<br>aactctgctgatctcaatagtactgaccgtataacaggggttctgaaaatgcatgtagcctcattacatgctgctgatttgagcctttggctccattttg<br>acattgtgtgacacataataggtactcagtctatatgtgttaactggcatcctagcaaatgtttgattaatgaataaattaat<font color="green"><u>AAATAATTGATGATTTA<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAATAATTGATGATTTA</u></font>actaaagtatagaggagtttagaggtggcagaggtcagcatggattggtttagataggcagacataag<br>ctgagcctgaggtcaacttctccttgttatagaatgttctggaattctggaacatctaggctggaatgggccatagggagcgtccagttcaatggttcat<br>aatattttcctgctcacagaccctttagaatttgatgaaagttttgaacactcatcccctcccctccaaccaaaaagaaaaccatagttatgtattcaat<br>ttgagcaggttcagaaggctcctggacaatggtttcccaagctaaattcctaaggtccagctcaacatgtcccttgataggaaatgcaactgatgcccag<br>agacagtgagtgatt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	142067474	142067793	1000532	0	+	10306; RIP_Alu_chr2_142_01	NA	NA	SINE	Alu	Yb8	tctgccaaaatttgggaaataagaaaatttggctattgtacaaacaaaactctagagaagagacaacataacaggactagataatgatatttctgcaaat<br>ggataattagggatttcagagggtgaagaatatttacattccagggaaggcatgaaacctttaagggcttttacaaaaacaaacaaagcatagaaaaaac<br>ctggacccatgaaagataaacagcttcagtgtatttctaccaggaaaacatttcatttcattactcaaaagtaccccctcgacatatatatgtatgaatg<br>aatgatactactttgttgttgttagcaagaaatgtgtttattcttctagtttttatatctgtcacaagtgaggtatactgaatactttttttctt<font color="green"><u>AAGAA<br></u></font><font color="red">GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAA</u></font>acatttctgattttcttaaatgtggaaatagaagaaaacagtcacttggtgagagcagcaggaggcagctaaatg<br>tctaggcagatagggacgtgtccctagtgaaaccctacctccaaagcctgtcatcagctgtcattagcttgaaagccaagctaaaagttacgtccttgga<br>ccagattgagaactcatcttcctgcttggcatgctttcccctgattgatccccacccttcaccttttttatatttatataccctttcctaattggtcttc<br>tactctgtcatgcccacctttgagtggtgtctttgctttgaccctttttgcctactcacaagccaatcagcatgcactctgagtccataagaggccccag<br>acctagccagatgggggact	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:LRP1B:NM:018557:2/91	
0	chr2	145063239	145063240	1000533	0	+	238613; pAlu2-145369095;1104685265294; RIP_Alu_chr2_145_01	NA;NA	NA;NA	SINE	Alu	Yb8	atttagcatgatatgtgcattgcttgtattgattgctcaagagttactcaattcagaaaattaaaaatatacaccctatagtatacagtatatactacat<br>agatgctgtgtatactaaagatactgggtatccgtagtatgtagtatatgtagtatacacagtatctatgtagtatacactatgtagtatatactacata<br>tacacagtgtctatgtacggtatacacacactacacacactacatagatgcatattgggcaatatggaattttaaaacaagaaacaaaaagatagtattt<br>ctactttgaggaaaaccaacatatttgtgtaaaagaaataaaactctttaaaattagctgttttagatttgacatttattcatca<font color="green"><u>AATAAATATTTACAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAACAAAA<br>AAACAAAACA</font><font color="green"><u>AATAAATATTTACAA</u></font>agagatgaagaaggcaccatgatgccctccgagagctgttaatgtaatgggtttaagacaaccacaatagaatga<br>agaactttatttttcacaagacagccaaagaatgctgaaatgaaaatgacaaaaacatctaacgttgaagagtccttcttacgggccaggtgatatatgg<br>tctattttaggtgtgttgcctcccgtaatttgcacaatgacttcataaggcaggtactcttacttcctctgccttgtttcaacctggccttcccagatga<br>agcaaccaggagcgataagttgtagtaagttgctggagggcacacagctagcacatggcagtggcgggcatgtgaatgggggcagtatgaccgtacagct<br>gaagatgcca	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr2	150472499	150472500	1000534	0	+	13570; RIP_Alu_chr2_150_02	NA	NA	SINE	Alu	Yb8	attttaacaaaataagaaagattcttagcattttacaactcagaagtcctctgtacactggaattacagctgaatagtttgcagagatgagaaagctgac<br>actaatgcaataaattcagtagatttcaggaaaactacttggtgcacacagtattataatgattgaatttttcaaagttttgccttaactgtgtgatgaa<br>agaatttaataaagggaaggctgaaagtaacatggctttttaaaatgtagtttcaattgtattcatttctaggacattgattgctatgtatgtactgaaa<br>ggaaattcctcatgcctcatgagaaaataaattttgtgtgcaaccaatcttggccaacatttatttagaaatgtctgtagcttagag<font color="green"><u>AAGAACTTACATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACTTACATT</u></font>atttttagatacaaataattaaagaattagcttaatttcaattatttttaatgcagccatgctttcctaa<br>tgagcagatttctttaaaaaaatcaagcaatttaggaaatcctacaggatagcaaatatttgctaatttaaatgtgaataacatctgtagttatttggaa<br>tataagggagataataaacagcgcttccaggaaaacccagagtacaactactattcaaacataaaactatttttttaactaagctgtatgccagttggtg<br>cagcagatttggaatgcaaagtttgcttgcatttagcttaaaaatttgtttttgagtcaattttaaaattgccattttaaaattaatatatactcaaata<br>agctttttcatactcat	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	152325548	152325849	1000535	0	-	pAlu2-152581221; 17093; RIP_Alu_chr2_152_01	NA	NA	SINE	Alu	Ya5	tcttcacatggcattctcctctctgtctctactcctcctacaaggacaccagtcatattggattaagaacccgtgctgctctaggatgacctcattttaa<br>ctcactgtatctacggtgaccctatttccaaatgaggtcacattctgagaccctggagattaggacttcaacatatcttttagggggacacaaacccgta<br>acacccttaggtccagtttgtttcaaaggattttcaaagtttcacaggattcatctcctagcttattccacttcctctttgaagcctcctgacttactaa<br>aaaataatttttaaaaaatgctgtagcaagatttgtgggattatacatattgtgggatacttcaaatgttttaaccatctataacgc<font color="green"><u>AAAAATAGAGTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAATAGAGTGC</u></font>aacacaactatgttattcacaagataattacagaatttactttgaaaatattaatttacagtgtactcttggaagtaggatccaa<br>gttttcaactccctaagaaaagacaatttattttaatcctgtgggtttatctcaggcagcaatcgtgtgcctcattagtcatgacttcagactcctacat<br>ttgaggcctgttgcgatagtgaggctgggccaagggaccggctccccacagataaccctgctcgcacttaggaagaagccatttttgaattgacatgtgc<br>cccattccttcccttctacctgctgagccaacacacgctgcctttcctctgacatcactctgttcatgtcctcatgctcctgactcagagcagtgcctgg<br>ct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	160564110	160564420	1000536	0	-	12521; pAlu2-160819787; RIP_Alu_chr2_160_01	NA	NA	SINE	Alu	Ya5	gtaaatcccactaggaaggtagtttggctaccatggttcatacttttacttcatttgcaagctctatagatttgtttattttgtgccagctcagccatac<br>atttataaagatgttttcaaaatgttttatccagcatttcaactagtttgaccaaaagaatctttcagggtacctaatctgctggttatttctcatagca<br>ccatttattttaacacatgagattttaggatagagaagagataagcacatgtattcagtctactgctcaatctttgagatgtctctctctgtgtttttaa<br>aaattttttctttctataaccctattgcataattaaagccattcatttaatgaacttttacaaggcatttgtatgacaagggacattt<font color="green"><u>AAAAATTACGTA<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAGAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAATTACGTA</u></font>atgtgcatgccttcatgttgctataatctgggagtggtgacagcaaatacaataaataactcatatatagattctta<br>gtcattcctgttactataacaaaatatcacatattgggtaatttataaataacagaaatttatttctcacagttctagaggctgggaagtccaagattaa<br>ggtgctagcagattcagtgtctgctgaaggccttcttgcagcgccctcacatggtggaaaggcaaaagagcaaaacaagactaggacactccctcagcct<br>cttttataaaagcaccaatcccattcatgaggatggagcactcatgactttattacttcccagaaggccctgcctcttaatactatcacatatgcgtttt<br>ggagggatata	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PLA2R1:NM:007366:11/30	
0	chr2	163374668	163374969	1000537	0	-	238625; RIP_Alu_chr2_163_01	NA	NA	SINE	Alu	Y	aaggtaatgcggactgagagcagatctaaaggctaaagataggtgagaaatgcaaatataaacatacctttcctattaatattagctgacctctactcaa<br>accaaatgcagtataaaacatttctctttcctatttcatttggtttctattatgtgtgttgcatgtatcctatgatgtgatgccaaattcctgacggaat<br>ttctgctgacacccagtccttatcttcattcacttgttcacttttctctccacttcagaagtgtatccccagtgtaataaacttattttgtatgtgtaaa<br>gtataacttctattgttttcaatttatttgattgtaaaatgaatatcatattatagatgttatttgatcataaatgtatattatatta<font color="green"><u>AAGAATAGGTGA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCCAGACCATCCTGGCTAACATGGT<br>GAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAATAGGTGA</u></font>gaacatatgattacaaaagaattctgtaatctttaaatcgatagcaactaaaattataaaaacttttacaaatcaatgagttaatg<br>ttattctagtgtcagagtacttctgcttctatcagtaatacggaaaatttgaaaattatctcttgcttatatatttactacctttagaatatctagaaat<br>gtttacatgagatgaaaaagttatacttgtgttatccttgtcctaaaagaaaaatattttttaaaactttaattcttgcaagatccaatggtcttactct<br>ccccaaatatatttctagcaaaatgtatttctgatatttcaagtctgacatttattttttactaaaatgcacaatgatagttattacaggaatcaaaagt<br>ac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:KCNH7:NM:173162:2/8	
0	chr2	163386874	163386875	1000538	0	+	52571; RIP_Alu_chr2_163_02	NA	NA	SINE	Alu	Ya5	taactgtggtgcttatatttggacatttacatctacatactttcttcaaaagataggtttacaattatttttacatctttactttcaatacaatttatct<br>tggttctcactaaatcctggggagtggagggttggactgagtttacacctcactgtgtgaattgaggaacttttactttcagacacagtggtttctgaaa<br>caccatactgaaattgttttaatatagctgaaagacagctgtacacagagaaactgggagtccaagttgtccaaactgctgatattttcaatatagccac<br>acctaaattgagtttcagtgttcaaaattaaaaacaaattaaattgtccagaatttgattgaggccataatctccacaataaagcccctaa<font color="green"><u>GTAAAATTT<br></u></font><font color="red">TTGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>GTAAAATTT</u></font>ttcaaaaaccgctgctaatttcttctttgacctatgatgtaaaaatttgttttacattattttactcagccacagatgtgggtgcaa<br>acttcattttgagcacgacactcaataggcatatcaacttaatatgtattttaaacccaattccttatcacatttttaaattattttatttagcacttct<br>attgcatttactgggtacctggagctgttttaagtgcttttacaaatgtaaacacggtcctcacaaagctgaataagataggttctattataatcatatt<br>tccatttccactgatgaagaaagtgaggacagggcagaaaggtaacatatcacacaatgtgtatgttccagatttggacctaggcaacatgactccagtg<br>ttca	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:KCNH7:NM:173162:2/8	
0	chr2	189667668	189667669	1000539	0	+	9148; pAlu2-189923457;1104685651546; RIP_Alu_chr2_189_01	NA;NA	NA;NA	SINE	Alu	Ya5	gtaaatatcaaaagcaaattagaatttgggagctcattaaaagtatctatttttatatctccaagtgagctgaattacataattcttatattaaggtaaa<br>tgttacatttattatcattcccttccatttccaagatactcaaatacctccgcagtaatctacaataaaaaagtactttgaggttgccactaggtggcga<br>tgtttaaacatccacaagtagaaaagacgaatgaccgggaactgttaaagaacttcatttctctcgtttctctctctctctctttctctctgacacacac<br>acacacacacacacacacacacacacacacacacacacacacacacacacataaatgttatagatgttaagatctagtatatttccc<font color="green"><u>AAGAAACATACCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>AAACATACCA</u></font>tagtggttaagtgtcatgtgcaactagaacttagcacatcattgacggtccatctcctgacagtttgctagcttgtcactatgaagttat<br>ctgaacaatacacttaaaactgaggacgtgtgatgagagacagtcatgaaaatcattggctaatcctgaaggtcttgtaggagtatctcatactgaacta<br>ctgacatactagttctcagtccagagctattttgcctggatttggcaatgtcaagaaacatttttaactgtcacaattgtatgggggatggcagtttcaa<br>ctggcatctagtgggtagataccaggaatgccgcaaaacttcctacaatgcatatggaattatttggcctaacatatcaatagtgttaacagtgaga	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:COL5A2:NM:000393:6/54	
0	chr2	191389040	191389119	1000540	0	-	1789; RIP_Alu_chr2_191_01	NA	NA	SINE	Alu	Y	aattatgagtagacattggtaatccaaggagaggctaaattcaaggttggcaggatggtaaatgatgatgcatgttcagaagtctagagcagacagtatg<br>gaagagtcaagcagcacaggacatttccaagaaatctttgagaaaacagggcaggaagacagggaagacccagtgccaagggactacaacgttgataaaa<br>ataagaaatgggggctggacatggtagctcatgcctgtaatcccagcacttcgggaggtcaaggtgggtggctgacttgagctcaagagttcaagaccaa<br>cctgggcaatatggtgagatcccatctctataaaaaagaaaaacaggaatgaaaaatggaaaaacacatcagtcaagaagaagtt<font color="green"><u>AAAGAAGAGAGTTCC<br></u></font><font color="red">GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAGAGAGTTCC</u></font>tcctt<br>gagtacctgtgaccttgggaaagacagagaaacccctggcagaagatgccagagaggtagctcatctttctcacagtgatattagggtaggtgaggaaga<br>ctgtttttcaatgatcacagatgagcgtaattatttgcaaacgccattgatgtgtgaaatgaaaaaagattattaaggcaaatgtattgactattttttt<br>taattccaggagagagacagcagcaggctaactagttgtctgttaagaacatccagagcaggaccagaatctgggccaggaactgagagacagattggga<br>caacggaacaaatctaccagggtatgctggccaacttagtcttctattatgatcaaggaaggatggcgcctgagaggtca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	195185884	195185980	1000541	0	-	13848; RIP_Alu_chr2_195_01	NA	NA	SINE	Alu	Yb8	aaaatgatgagacatataaagaaaaaaagaatgtatggtcaatatgtggggggggggggagggtggaaatgtcaatagaaactttccctaaagaagtata<br>gatattggacttccaagacaagtattttattttgttttgtttttgagacagggtcttgctatgttgcccaggctaatgttgaactcctgggatcaagcaa<br>tcctgctgtgacctcacgagtaggcgtgaacacaggcacatgtcaccatggccctgcttacaagaaaattattttaaatcaacagttataaatgcatcaa<br>agaaataaaggaaagtatgtctgaagatcaaaaggaaagtagaagtatgatgccccaccaaatagaacatataaaaatatagaagtcat<font color="green"><u>AAAAACATCCA<br></u></font><font color="red">AGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGAGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AACATCCA</u></font>aatagaaatactgtagttgactcatctaataaataaaataaaatatttattagagaggctcattagcagatttgggctagtagaagaaagaa<br>tcagtgaacttgtggaaatcagaacagttgaaattatacactttgaacaacacaaaagaaaaagaaagagaaaaattaaatactgcctcagcaatctgta<br>gggtaccaacaagcataaaaacacacacatagggattagacaacttagggagaggctgaagtttttgaagtttttatttgcttcagtgcacttagaccag<br>ggttgtccaatcttggcttccctaagccacactagaagaataagaattgtcttgggtcacatgtaaaatacactaacactaacaatagctgatgagc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	202429910	202430214	1000542	0	+	pAlu2-202685587; 10606; RIP_Alu_chr2_202_01	NA	NA	SINE	Alu	Yb8	aagaacaagtttcttgtggagccgtggtccagtctgcaaattgctcctatctccagttgccatggtttccaggagaacgtggctctcatcttttcctgcc<br>ctgcctgtacttctccctgtccactctgttctctattttccctcagcttcctaactgagaatgccagcagaagtttagagtcacagatggattgtaggaa<br>acaatttggatgatgccaatacaaagctactgtggtgggcatatgctgctcccccaaacttcagacatttgggtttcaggttggtccaggcaatcaacag<br>tgatccttaatacaaaatgtcttggtgagagcaataatcaagaaacttggccaaagtgcttccctgccagattgtgtgcttaat<font color="green"><u>AAGATAACTGGGTTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGATAACTGGGTTCC</u></font>aataaaacagagaaaatatgttacattttaaaaaattttctgttgtttcaaaacaatgtgcagtttttctatataagaa<br>gaaaagtctccaggcccaacatccatagggctcatcatccattgtttttcttttaagttttcaatttaatccaaataagtcaaaaattttcaggtaccta<br>ctatctgccaggtgctgtgccgtgcgctggggctacacagatggagagggtgcattcttggatctctagtgtttgggtttggattcattcacccacactc<br>tttcaccagttctctttgttactggggtgctcatttgtgagccctgcttccatggcttggagagtttgtggctgtgggccaggctgagcttatggagcaa<br>aggga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PFTK2:NM:139158:10/14	
0	chr2	209159977	209160289	1000543	0	-	pAlu2-209415649; 13791; RIP_Alu_chr2_209_01	NA	NA	SINE	Alu	Yb9	atcttttcaaaataaaatattagatgcatacaataatatatttatgccagttataaataaagcacaataatgtagtttacatctagggacccagcaacca<br>aaccaaaaattggaacaccactaaaacatgcatcaatccatgagtttcttcactattccagatccctgctaaccccagaagtaatcatattagtgatgtt<br>attgataaatcatatgacttattagattatatatacacattatatattaggaatatttgatatatactatgtaacatattggcctgtatattacaaaaac<br>tgtatgtataaactattatatatgtataactaaatacttatatttcaaatatatcatgtttagttttgcttgcttttttgctttat<font color="green"><u>AAAAATCAACAAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAATCAACAAAC</u></font>atgtttctaatgtttgtttttggtgttaaatacagctgtaattcaaacattttagtctgtgtttcataatatt<br>gcagttcatgaacacatgactttattcaccattcttttatcaatatttttgtttccactttaattataaaccaggctgttacggctattccttccttcct<br>tccttccttccttaattgccaagctcatttgatataatattatggctattcttacaatgcacaagaagtttctagaatgtacactcagaaatgaaattgc<br>tgagtcataggccatgtgactattcaaacttacatgattaatgccaacaacaaatttttacgcctatcaaaagcatataagcattttcattggctcacaa<br>cttctccatcact	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	214483462	214483756	1000544	0	-	12563; RIP_Alu_chr2_214_01	NA	NA	SINE	Alu	Yc1	ggcagagtgagactctgtctcaaacaaaacaaaacaaaaacttgtttctattgaaaatgactttagttttgaaaatcaaatatattacaggtgccagatt<br>gatggtaatcactttttttttaaagaaatgtactgaagtgtttttatgagagggggtggaacaggaggactcaatagttcttacatcactaagtaggaag<br>tggaaagtgtagaagcaagaagacttggttggcttctcattctggctctgcataaatgtccccacatgatcttggacagtttatttaatatttacattta<br>ccatctctgaaacttactgtctttatttggaaatatggataataaattctggttgatatacttttaatgattgttttgtagatctagt<font color="green"><u>AAAAGAATTCTT<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAACTACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAG<br>AATTCTT</u></font>acaaaagcaaatttttaattatttccacctttcaaatttgggattattttgtaaaaattctcttgttatctctagttaagacttttgttttgt<br>tttgtttgctgaaatgagttgttcctctcctagaaaatcttcagtaaaaagtaatagatttatatgatctgaagagaagtcagaatataagttcttatgt<br>agaatagtttatcactatttccgtaactagtggaataaaataaattactatcgttatattgtagtctcattgacctgtgtctatctattcaatagaacta<br>tttgaattcataaaaaggctattagtcacaatgttctgttaccatagaatatgtatgtattaatttcatgcagcagaattacatacaaccaaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SPAG16:NM:024532:11/16	
0	chr2	216801055	216801356	1000545	0	-	17889; RIP_Alu_chr2_216_01	NA	NA	SINE	Alu	Yc1	ataaggctattgtaaccaaaccagcatggtattggtatagaaacagacacatagaccaaagcaacagagtagagaatccagaaataaatccacatattta<br>cagctaaatgatttttgacaaaggcatcaagaacatacattgtggaaagaatactctcttcaataaacagtgctgagaaaattggatattttctcagtgc<br>agaaacatgaaacagtgcagaaaaatgaaaatggatcccaatctcttcccacatacaaaactcgagatgaattaaagacgtaaatgtaagacaccaaact<br>ataaaactactagacaagaaaaatacacaaattgggctcaacaaattaaaaagctatcttctgcattccatatcatctagtggtt<font color="green"><u>AGAAAGAAAGAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AGAAAGAAAGAAAGA</u></font>aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaaagcttctgcatagcaaaggaaacaacagagtgaagagatg<br>acttaataaatactcaaggtgatggataccctaaatatcctgacttgatcattctacactctatgcatgtaacaaaacaagtgtaccccataaatacata<br>aaatatcatatcaattttaaaaaccaacaactttgcatagggcatgacgcatcacctctgtgaactgatgagtccaagcatcttgccatgcatctgcttt<br>aagaacacatggcgctcccgtctccctctccctctcccgtctccctctccctctcccgtctccctctccctctcccgtctccctctccctctcccgtctc<br>cc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	223505612	223505919	1000546	0	+	238378; RIP_Alu_chr2_223_01	NA	NA	SINE	Alu	Yb8	gataccagaaataaacctgttcagaagaacatacttgaagccctgctaatggagtccattaagtagaagttaattgtttttctttctttctttttttgag<br>atgtagtcttgctctgtcgcccaggctggagtgcagtggcaccatctcagctcactgcaacctctgtctcctgggttcacgcaattctcctgcctcagcc<br>tcctgagtagctgggattacaggtgtgcaccaccacgcccagctagttttcgtatttttagtagagtcggggtttcaccatgttggccaggctggtctcg<br>aactcctgacctcaagtgatgtgcccgcctcggcctcccgaagtgctgggattacagacatgagccactggacctggcctgtttttctttt<font color="green"><u>AAAAGCATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAGCATG</u></font>tatttagcagtacaaaaattagggcctaattttaatatgtgcttttaatttcagcataaccattaatgcttaattttgcaaag<br>ttttaaataatttgatagcaaattacttagagaatggccagtatttatatatgtattaaatgttactaatattattactcattgttttcccctctccacc<br>tttctttgttttgcagatcgtaaaaaggaccttgtaaaactacaggcaggggaatatgtttctcttgggaaagtagaggcagctttgaagaatcttccac<br>tagtagataacatttgtgcatatgcaaacaggtaagaacgtggaattcatactacttttacttaaaatatttgatgtccatagacatttcctacctgtat<br>ggaccttc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ACSL3:NM:004457:14/17	
0	chr2	226725818	226726050	1000547	0	-	570; RIP_Alu_chr2_226_01	NA	NA	SINE	Alu	Ya5a2	gagtacactcattaaagaaacaaatattcagatgtatatacatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatacacacaca<br>catgtaaaatagaacggaattttgggacaaaccaagaaatataataaatatgcacaaagagctaagagaaaatagacagatacatgtgtgtatgtgtgtg<br>taatctccctctgactttattaggaataaaatataatacttaaaacaaagaacacatagaagggataaacaccaggatggatacagctaaagaaaaagct<br>gggaattagacagctgaaaagtcacatggaaaaactccacaggaacagaaactgatgaagaaaaataaaataataagccaggct<font color="green"><u>AGAAGATGGAGAAAGA<br></u></font><font color="red">GACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTGCTTGGGAGG<br>CTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCT<br>CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAGATGGAGAAAGA</u></font>atcaacatatagtaatgggagtctcagaagacaaggaaaaaaacagaaaag<br>agaacatgtctttagaaataatgaatatacagtttaaaaatttcaaaaagattacataccttgcattaaaaaggctcttagagtatcaatttggagagaa<br>ttaaaaacctacatcttgacatattgcagcaatattttaaaacattggagggaaatatattattctaaaagtctctatagaggaagaataaatcatggca<br>aaataataatcagattgatgccaaatttttcagtaccaatgctggatataaaatagaaacatagaaatatttttaaattatgaagaaaaataaattctac<br>cacacttttatttcaagccaaattattatttaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	231033554	231033881	1000548	0	-	Yb8JW659; 14218; Yb8AC1527; RIP_Alu_chr2_231_02	GTGGAAACAGTTAATGGGAAGTG	AAGTGGGTTTTGAATGATCACG	SINE	Alu	Yb8	accagtcgcacagaacaggaattaatttggattccatggttgtgtagctctgcctctgggcctaattgtaataaatgaagaattttcatttgtgtcccca<br>gtgaacctccttcactatcattaataactccccctctctgcaatttcactgctggggctagaccttcaccccacctccgtgtttttccttttgctcaact<br>ctgtcccttcctttgtgcctctcttggctctgttttgttttttacctttccctttacctactcgtctcattctttgatggttaatattttgctttttaaa<br>aaaaataaaaattataattgcagtataagacacatgaataaaagtgggttttgaatgatcacgaaggaagtaaatcactttgatc<font color="green"><u>AAGAAACAGATTACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACAGATTACC</u></font>aataccccagacacctcctggtgacacttcccattaactgtttccactaacttgctc<br>aaagacaactaccattgaggtttccaacactaaggttaattttgcttgttgtgtaatttataaaaatggaataatctcttttctctccactctttctttc<br>tccctttacctctctctcaatatatatagatctcccaaaagaagccaaatcccccaaaattgtatggatattttactcaacatgcttgtgaaagtcatct<br>gtattcgttttgtataattattttcactactagatagtattccattatagaaataagccatgaattatttattcatttgtacaatttcaagcatttggct<br>tctatgaataatgctgccttgagcattc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	449	106	NA	intron:SP100:NM:003113:8/25
0	chr3	636726	637017	1000549	0	+	238103; RIP_Alu_chr3_000_01	NA	NA	SINE	Alu	Yb3a2	agggaatctggcagcagactgccttagacttgagctgcaacgttcattctttcctgggtctccagcttgctggtctatcctgcagattttggacttacta<br>gcctccacaatcacataagccaatttcttaaaataaatctatttctctctctctctgtctctttctccatccattcatccattcatccgtctacacattt<br>tttattgtttatttttctctggagaatcttgacggatacaccatctgtttatcaatcattcttgaaacagaaaattctacctgtgtatgcaccttgactg<br>gaaagagtttttgccaagtctgtactgtacctagttaaggcatatttagaaacatggccgtgggaaaacaaaaaacagcaagatt<font color="green"><u>AAAACATGGAGATAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCGGCGCCTGTAGTCCCAGTTACTCGGGAGGCTGAGGCAGAAGAATGGCCTG<br>AACCCGGGAGGCGGAACTTGCAGTGAGCCAAGATAGTGCCACTACACTCCGGCCTGGGTGAAAGAACAAGACTCGGTCTCAAAAAAAAAGAA</font><font color="green"><u>AAAACATG<br>GAGATAT</u></font>attatatatcctaattctacaaggatgtttctggctttacttatgtgtgtattaaggtttttcttctcttcttccacactattttcttatagt<br>tgacatatggtaatatagtaagaaaaaatacacatatatttcttcttgcaatatatattcattgggatgtttaacactgagtgtcaacctgattggattg<br>aaggatgcaaagtattgatcctggggtgtgtctgtgagggtgttgccaaagagattaacatttgagtcagtgggctgggaaaggcagacccaccctcaat<br>gtgggtgggcacaatctaatcagctgccagtgtggccagaatataaagcaggcagaaaaacgtgaaaaggctagactggcttagcctcccat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr3	1581423	1581424	1000550	0	+	239286; RIP_Alu_chr3_001_01	NA	NA	SINE	Alu	Ya4	tgtgaactaggaaagtgtgacctccttttggaggtgaaacagatatacagattacatgactcgtaaaaggtctaatggtggatctggaactatctggctt<br>ctacttccttcttcattgtcatcctcatcatctatgcttcaggatttgggtatctgtagaaacttcaggtggatttttcctattttcttatgtgagctgt<br>gctgaagtttctacctttgcctatagcagagtcatttgaataacaccacacagcgctcctcctctaactacctttgattgaacaccattggtgctttgac<br>ccattgtacatgggggtcagcccaagttaattggcaattccaaaccaccattctctgttgagctaataggaacaaaaggatct<font color="green"><u>AGAAATTAGTGCCATAA<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAATAA<br>AATAAAATAAAATAAAATAAAATAAA</font><font color="green"><u>AGAAATTAGTGCCATAA</u></font>aggcaacctggctgttttagaaatttctcccttggtaactgccttctcaccatattt<br>cattagctttaaatttgcagactatgaaagatgaagttttaccaactgaaaacacatctaggaaatttttccatgctcatgggtaggaagaatcaatatc<br>gtgaaaatggccatactgcccaaggtaatttacagattcaatgccatccccatcaagctaccaatgcctttcttcacagaattggaaaaaactactttaa<br>agttcatatggaaccaaaaaagagcccgcattgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacctgacttcaaactatacta<br>caaggctacagtaaccaaaacagcat	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr3	2608042	2608347	1000551	0	-	15487; RIP_Alu_chr3_002_01	NA	NA	SINE	Alu	Ya5	acaaaaaattttaaaaaactagccaggtgtgttggcatgcacctgtagtcccagcatactagggaggctgagggagggggatgccttgagcccaggagtt<br>tgaggtttcagtgagctatgattgcactacttactccagcctggtctcacagaacgagaccctgcctcaaaaaataaaaataaataaaaaaataaaaacc<br>tttcaatgattgcttcttagtctcgactcaaataaagagcagactactacacctggcattcaacacttacttttctttacctcccttacatgagagacaa<br>gttgggatctcatttttcttcgtttaggcctttcaaaaattcacctcatattttttttcgcttagtttcagaaggctacaatttt<font color="green"><u>AAAAAGTCACAAATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCCGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAAGTCACAAATC</u></font>tactagttcttcaaagggcagactacatcaaaagtatctaagcacttgacttgtatttctttaagggactttatcagct<br>tataatacaaacaattattcatatattcaaaaatttattgaacatctggacaatgtgatcatggagatgtagcaatgaactctacagacacattttctct<br>tcaaatggagctccagtctagatggtgagatgcacaagcgagttactacaaactgagatgaaagcaattagcaattataaattgtaagaaatattgtgat<br>ggtctaggcactgtttccaacttggaaaataacaaggatcctccacaaagggacctcctggagtgatgcattatttcgaatattgatgatgatttcacag<br>ttatat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CNTN4:NM:175607:3/24	
0	chr3	15269348	15269349	1000552	0	+	17005; RIP_Alu_chr3_015_01	NA	NA	SINE	Alu	Ya5	acactaatgagatttcactttggtaaatacttcatgctttcagttttagcctattaattttaggtggacaaatttaacaagttttctgttactttttaaa<br>aagaaaaaatccagaacataagaactatattatgaacacatgatttgaacctgttgtggtaaagatcttgtacaggatgcaaactaaaaacctaatccct<br>gccatcaaatttattagaagagacctatatatgaacaacttaaaggcactgatttctataatagagctctaaaaacatgccaccagtgtatgaataaggg<br>aaagattaattttggctggaccaatataaaaaattgtatttgaagaattgatactttaacttggaccttgaaggtaaagcttcaa<font color="green"><u>AAAAGACAGGTTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATAGAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGTGGAGCTTGCAATGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAGACAGGTTACT</u></font>tatgtacccaatgtgtatatttttctttttaatcttcccaatagctgaataaagtatagatactattatttgtacttcttac<br>aattgaggaaataagcctaagagattaaaagattttgcccagggttcacaagccttcttccctgagccctgattgagctgctgtgtgtgtctaatggcac<br>ccacagtcacggccgtctagtcgagggagggacaagatctagacccattgtagagggaggaaaaacaatccaggccttttggaggttctaaataacagac<br>agaccagttgaattgttagagaggatgactcaagtttctaattcagcacatggacagatgctcatagcttcagtgaaaggtaagttttgacacattaaat<br>tgc	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	exon:3UTR:CAPN7:NM_014296	
0	chr3	23739078	23739391	1000553	0	+	239048; pAlu3-23613773; RIP_Alu_chr3_023_02	NA	NA	SINE	Alu	Y	ccagcctgggagacagaatgagaccctgcctcaaaaaaaaaaaaaaaaaaaattaaagggtgaggtgctggggaagtctgcagcattgttttccaattgt<br>taatatgttccattaattttcccaaggtgttcaaaatgagtttctagatgctatgcctacatgcagtgtacaaattacagtgtttaggggaatgttgaca<br>tttgttatactagttgtgtgacacttctcagtgagtaaactcatctaatcatttgtaaatctcagaactgttgacttctgtattcagaaacaatttattt<br>attaactctgaaaaatgttcagttgttttcagagaagagttcagtcttatatgtaattattctggagaagagcaacatttcttt<font color="green"><u>AAAATGTTTGATACAA<br></u></font><font color="red">GGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAGCACGG<br>TGAAACCCCTTCTCTACTAAAAATACAAAAAATTAGCCGGGAGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGCCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCGGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGAGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAATGTTTGATACAA</u></font>atatcaaatgattctccaaatatatgttggagaatataatttccctttgaaaatgttttctgaagactgg<br>aaaattaacttgcataatgtctccatccaacaagtcattaatttacagccttccaaacacgtttgtctgaatcttaaaagtaactggttaactttcattt<br>ttcctctcataactgtgacaaaatccctactcgtggctaccaatggctggaggatgcacttcatacatttctcagagtctacatgtatttagatctacac<br>agaaaaattgaaagatcccaaattttatttccgtgtaataccacaaagcttcttttgggtgaaacagtgctttttctggtggtcctcttgtaagtgcaaa<br>tttgcctgagagac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	35026676	35026989	1000554	0	-	239280; pAlu3-34898171; RIP_Alu_chr3_035_01	NA	NA	SINE	Alu	Yb8	acagaatacaaattagcttgatggggactctttatgccctttgactggtgcagagggcattcagtgaaggtgacttgaaacttgaaggccttactgtttt<br>ccagaagaaggttgataaacagctcatggagcccgaaggtgttagtgtaattcacctacaactcttgtcagggcaggtacctcagaggaacagcataatc<br>aggggagtacctactacagagttcagcagaagaggagagagaaatagattctctgtgacaaatatattataaattgaaattctgtatgagagcatttgaa<br>gttaaagcttaagtactattttttaaattgctcgaaaaatatctaaatcctgtacttgttaatcttctttgtgtatttagggaaat<font color="green"><u>AAAGAATTTAAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAGAATTTAAATA</u></font>taccttctttaaatacctcgaaaaacatcttcccataggctgaaaattgcctaatatattttttgatttttt<br>aaaaaaaaattattctcaaaaatatctattgagggctttccgtgtatcagacactcttctggatgctgagaagacttcagaatacaatgcatccaaagac<br>catggcttcatggagtttagattgtagaatagcttgacaagcagtaaacataacaaatgaataaataaattatatagtatgttagaagatagtaattact<br>atgggaaaacaaatatagagaaaagttaggaaaatccaaagtttgggatgatgattgaaatttaaacaggataaaaagtaaatttgataattgatttgaa<br>gggtgcaaggagat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	43006111	43006424	1000555	0	-	315; pAlu3-42850242; RIP_Alu_chr3_043_01	NA	NA	SINE	Alu	Ya5	acccaggctggaatgcagtgacatgatcatagctcactgcaccctcgacctcctgggcccaagcaatcctcccacctcagcctcttaagtagctgggact<br>ataggcacacacctttttaaacttttgtagagatagggtctctctctacataagtttatgttgcccaacatagacaaaagtctatgttgcccaggctggt<br>cttgaactcctgaaccaagggatcctccctcctcagcctcccaaagtgctggaattacaagcatgagccaccacacctggccctgcacagggactcttga<br>ccatgcagacctcccagcaggtgcacctgtctatgctgtgagtctaacgctgggagcaccacacagagactcctccaaagagaccc<font color="green"><u>AAAAGAAAGCAGGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAAAGCAGGT</u></font>aggattttccatgataaacaggtattgctcttacaatttacaaaagacagagataaaacaatagagttgcaa<br>aaccctaacaggcccaaaaggaaaattgaggaaaacattcccctataattaggtcaggaaaagaagcagtgacaatattcaaaagaacaagtttctaaga<br>atcctacctcaactctacattcaccaaaaagaaagatcaacggcattctgaaccctaaaagggaagtccagacagacagaatgggacacctagaaggaag<br>agattgcacagacctggagacagaaagcaaatgtgaggacccaccccatccattaatgcaccttttcccaggctctgtaggaaatgtgttccttgctcct<br>ccctgcaaccctct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LOC729085:NM:001129908:1/5	
0	chr3	67772615	67772616	1000556	0	+	21484; RIP_Alu_chr3_067_01	NA	NA	SINE	Alu	Ya5	taatagttcctggcatgtttttaaagaaagctctgtcaaggctttcttctgtgtaatttattgtaatgtacattcgaaaaaaatgtatatgtatcagtaa<br>tttaccaagcccatactttcatggacactattacttatggaggggctcaaatgtggatttaaatatttttaatagtgaatagatttagaagaaaaatgtg<br>aagtcaatgatattgatacttaaacatcacaaaaagccctgaagaggtattaccctagatgaggcaccgaagtgttaaaccagttgtccgaggcacaaag<br>ctagtaagtggcttacatgtcacattagccatggaagagccttgcagcagatgctctcagtgctccatccgcatggcctcagatcgcgcc<font color="green"><u>AAAAATGGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCANAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAATGGTG</u></font>ctgtgcactcttactcccaagagcagccccggcaggtctttgtcttaagatgctgaagacaacatgcccttaaagaacctt<br>gaagagggtatataaatacttcaactctcttgcccctaactacaactctgaggtgtaacctacacagtttccatagctgtcctgtggaattaagcaaagt<br>caccctctttgggattcagtttaataacacacccttctcagcctccttcccttcaacttctctaaacccctttgagtttttcctgagaatgcctccccga<br>aaagccactttcacatgaatccttttctcaggatgtgtgaccagggaacaataagaaaagtcttggggttactatggtccaaggttccccaaacaagaat<br>cactcatac	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SUCLG2:NM:003848:1/11	
0	chr3	68953182	68953456	1000557	0	-	17560; pAlu3-68694102; RIP_Alu_chr3_068_02	NA	NA	SINE	Alu	Ye5	ttaacatgaggctcaataggattgcaaaattaataccggtagagattttctacaggcggtttccattgcagaattaccggagaagcatttgcaaatacct<br>ttttaagtgatggatttggcagcacagtctttaaatagaagacagagagctgctagttacttatcatggtttaaatatgtcaatattttctcatttttct<br>ttgaataaaaagtaacataagggtaaaacacctgaaagaagtatagtacttgggaatgcacccttcaggcttcactctttatggcaaggttgaaaatcca<br>gggtagcagtggtgtttattgccaaggtagtgccttgaagaactcatataattcacaaagcgtatcattcaggacttgttttctctt<font color="green"><u>AAAAAAAAAAAAA<br></u></font><font color="red">GCACACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA<br>ATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGTGGAGCCTGCAGTGAGCC<br>GAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAAAAAA</u></font>agcagggaggtt<br>gtctacatagtgtataaatctacagccatcatatcttattgttgttttgatgctgtgtttatatcttaggattatctctaatagctgtgagtcctcactg<br>aaattaacagcgtggtatattttggcagtggttcaaaagttattgatttttggttatgtttttcagcatcactgaatgtatggaagacattattatagaa<br>tttgtaaaagattttaacctgggagtattggctgttaaaacacacagcacattagtgactaaaatgatttacagaatgcatttccatactactaagtccg<br>tgggtatttgtacactacatcatttggtaccaccttgtggtacagcataaacacagtttgtaattcctttggttt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FAM19A4:NM:001005527:3/7	
0	chr3	88692358	88692359	1000558	0	+	22109; RIP_Alu_chr3_088_01	NA	NA	SINE	Alu	Yb8	acagctaatatcatactgaatgggcaaaaactggaagcattccctttgaaaactggcgtaagacagggatgccctctctcaccactcctattcaacatag<br>tgttggaagcatttttttctttgtcgtgatttacttggtggatcagaataacttcattcttgtcagggaacaaaaataatggtcactcttagagttgaca<br>aagatgtacatgtacatgtttgaaggaatggtgtgatgctaagaagtttgccgacagataagttttagtgtgatatggaacacctcaaacctcatagtct<br>caagaattaattatctcatgagctggactcagctagaaggccagtaggtcagtaggatatagaggttccagttgcagttaaaagg<font color="green"><u>GCTCACTTTTGGAGC<br></u></font><font color="red">CGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GCTCACTTTTGGAGC</u></font>tgtgtcac<br>catgtgtcatctaattcaacagaaatttcccaggctcaagacatcttacctaggaaactactttttttagcttgtgtcccctgagggtcgagtgtattac<br>actggcaaatctgtagcttgaattttactcctggtcgtagattcctgggtttgcagaatctctgctcagcacaacctttgttcaatagagatgctaatga<br>attttcccaagtcaggagaatttataagcataacaaagacactccttggaaatagccaaaatatctatgtaaacaaatagaacatttttcatgggtctgg<br>agttcctgcataaaaggacattttgacttgagatttaatggttactatggcattagttgtataggcacaagctatta	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr3	103766478	103766802	1000559	0	-	pAlu3-103564923; 6153; RIP_Alu_chr3_103_01	NA	NA	SINE	Alu	Yb8	gaatttgagatggccattagaatccctgaggggagattggatgaaactgtctataaaaagtatgagtagatagagaaaagcagaggacaagaagaggaag<br>tagagccaacaaaagcctacagaagaaaagccaggaagtagcagggaaaatcagagacttgaaggttttgagaaaccccacatatgcacatgtaattttc<br>tgcgagagaagggagcagtgatatgggctggactccctccctcccactgccaaatttatgtgttgaaatcctaacccctagtatctcacaatgtgattgt<br>atttggagatacggtgtttaaagaggtaactgagttaaaataagattgttagagagggctctaattcaatatcactggcatctttat<font color="green"><u>AAGAAGAGGAAAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGAGGAAAT</u></font>tagttctggaaggagttgtactgcacatctagtgccccaattatctggcttctttcagcttc<br>tccctgggagttgcacaacatatccagctgcccaacttttctgcctgctacccaagggactggcttctaacttgactatccctgagagccactgggatct<br>ggcatctgctaggcccctgggagctgcagagagcaaaaacacagtttgaaagagtgtgcagaatgaacgagagtacaggcattgctatagctcttctccc<br>cagctcaaaggggagtaagtgggtgataaactccagctttcagcttctctctgaggagagaagggattggaccagccatctaatgccccaatttttttac<br>ttgctactagatggactggcttctg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	113950092	113950402	1000560	0	-	pAlu3-113748530; 16468; RIP_Alu_chr3_113_01	NA	NA	SINE	Alu	Yb3a2	tttaagatgattctcacttacaagaacactgagtggtaagttgagaaaactatgattctcatgttcaagactattttccaattgttcaccctatatttcc<br>tgttcaatgcccctttacccactttctctgccccaacctgttttcccagataattctccccatctagtaactcccctttccttttgctcattatccccaa<br>cttttagtactttccagagtgccagctctggaccctttatccttcaggctcaaagccctgtactattttattttctctggtgcaattatcctccataact<br>gaaatccagagctcaaatcactaacaactaaaagctaacttctaaggatgcttagtcatcatacacttcctagaagggaat<font color="green"><u>AAGAAATATTTACCTTCCC<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAATCCGGCCTGGGCTAAACAGCGGGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAAATATTTACCTTCCC</u></font>tcctgggtgtggggagtgatgggaaccaagtgggagcagagaaagttccctccctcctagaatgggttta<br>attactccttcccttgcaaagaagcaaagagaaacagaaaacaggtagtgatgtcaccatatcaaaactggttaaaaactcatatgctgttacctttata<br>ttaccatatgctgtgtcttgtatgttcagaataatttcttataattaagggaagaaaattatgatgcccttagagcttcatgtgtgttggcttctgttcg<br>tcctctgtttgatcatgtcccagtgggctggtggaaaggatctggtgaaagtgatttctttataaatttctcttttattattacattatctgggccctgg<br>tcaccaaatct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	115336724	115337037	1000561	0	-	981; RIP_Alu_chr3_115_01	NA	NA	SINE	Alu	Yb8	accaacatggtgaaaccccatctctacttaaaaaaatacaaaaattagccgggcatggtggcatgcacctataatcccagctactcaggaggctgaggca<br>caagaatcactctaacccaggaagcaaaggttgcagtgagcagagatttcaccactacactccagcctgggcgacagagggaaactccatctcaaaaaca<br>aacaaacaacaacaaaaaaaaacaaacaaaaaaacacaccataatctctgttgtaaataggcattcagataaaatgaaatatgcttattttaattattag<br>aaaatgccatcaaactaaaaaccaaaaaatgttaaatatgtattctcttaacttgacgtcatgttaagtgaaataagccagacatagt<font color="green"><u>AAGACAAATATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGC<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGACAAATATC</u></font>acatgttctcaatcacatatggaagctaaaaaagtggttatcgtgaaaatagagagtaggttcatggttaccag<br>aggctaggaaggagatgggggagggggcgagaaagagaggtggattcaggggtacaaacatacaattaaatagaaggaacaagttctagtgtctaatagc<br>acagtagggtgactacgcttaacaacagtttttatatatttcagaatacctagaagaaaagatttgaaatgctcccaacacaaagaaatgataattgttt<br>gaagtgatgactagcctgatttgatcattacacattgtatgcatgtatcaaaatattgcatttgccccacaaatatgtaaaattattatatatgaatttt<br>taaaatcttcaaga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DRD3:NM:000796:5/7	
0	chr3	117757975	117758285	1000562	0	+	30973; RIP_Alu_chr3_117_01	GTTGTGCCCCATTTCAACTACTG	GCGTCTAACATCCTTCCTAGATTG	SINE	Alu	Ye5	atgtatatggtatataagaaacaaatgcatatcatgtttagacttaggtcccatccccaagaaatctcattatatatatgcaaatattccaaaaatttta<br>caaaaagatctgaattctgaaacacatctggtcctaagcattgcagataagaaatactcaacctatatatatttgggtgaaaaagtttgatgggtttacc<br>catttatgtttgttgtgccccatttcaactactgtttgtcctagaaaatgagatgaacaataaaatttcagatttaggttttataactttttaaatatac<br>acttaaatgcacgcgcgcgcacacacacacacacacacagagtagctaataaatggctcctacttcaccatgttcgaattcctttata<font color="green"><u>AAAAAATCTTCA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAAATCTTCA</u></font>gaagtatagtatgggcctttcatgaagggtatacctaaaaggtacaatctaggaaggatgttagacgctgtcctgat<br>taatacttaggaaacctgaactaacttttctgtagaataaaaagataaaaagaggctggccttcatctgaaagagggttataaataaaatccatatcatc<br>attttacttatgacaaaaatcacaatttttttctcctttaaaatggcataccttattttgtcatttttaaaaataaataaatacagacctgggtagttaa<br>aattgccaagggaatggaagtgggtagcgatgtgcatgcagtgtgatggcagaccagagctgtaggagctcttcacactgcttcagtgaggttgctaagg<br>gatatgagccc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr3	126051364	126051365	1000563	0	+	2237; pAlu3-125850277; RIP_Alu_chr3_126_02	NA	NA	SINE	Alu	Yb8	ttatgccacatcacctgtgtttgtttctatttctctcgccatttaccagactagtatttatttggggggcatatttgatgttttgggacatcacaggcac<br>aactcattatcattggaaactacatatataaatacaggaagacagattccaaattttagctctatcgaaaaaagaaaacaagaagaaagagaaaagacag<br>cactagatttgtctaccagctacaataagatagccaacaggcagagaaaaggggaattaattcagaggaaaagaacaaagagaaaagctagtgtctggca<br>ggtgtggccttttctgtctcaccctatagagttcaaagagaggctcaagtcagggcaataactggaagacccaggccacgataatga<font color="green"><u>TAGAAATTATGAA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTTAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAAATACAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>TAGAAATTATGAA</u></font>aaacaaatcacttagaaccaactttaaggctcaactcataccagatcattctatctgccttgggcttattaacct<br>ttcaggagtgccaagagatgccctatttatcctgcagtagaactgtctacacatacttgaaatttggatagattctttgtgtgtgtagaggcacaacagc<br>aaaggtggcctcactcctgcccagcgggtctacacctgacttgccggcagccacatctcagagcaaccagtctttcatctcaagctgacaactagcaagc<br>tgaagccttctttaacttgcagggaactcaatcctctatgcttcctctcctcctcccaccgtgacaacaaggcatatttcactaactagatcacgaagaa<br>tccaatgatcaa	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ITGB5:NM:002213:3/15	
0	chr3	145187975	145188283	1000564	0	+	4020; RIP_Alu_chr3_145_01	NA	NA	SINE	Alu	Ye5	gtgtcagttgaaaatattgttatttgaaatatatctaacctacgggacatcatagcttagtcttgcctaccttagacatactcagaacacttacattagt<br>ctaaagttgggggaaattgtgtaaaacaaagcctatttataataaactgttgaatataattatattcatgtaatatattgaattctgtactgaaagtgaa<br>aaacagaatggttgtatgggttcttgaaatatggtttgtactttatttttaaccattttgatgatccctggcactgcagctctgagtttggtttgacatt<br>ctgattattacatctcacccaaaactttgctctccatttacttttgagttcttcatgggatagatgagtagtgtctgaagtgtttt<font color="green"><u>GAAAATTAAATGCC<br></u></font><font color="red">GGCCGGGTGCGGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCTAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAG<br>AAAATTAAA</font><font color="green"><u>GAAAATTAAATGCC</u></font>atagaagttgtaaagcatcaagaacaaagcctgtaggtctagaaccaattcagttagcaaaaccaaagggttgttgc<br>tccatggtgagggttttatattttttaatcccctctttccccctgataaaagtaatatgagtatcttttgacaaacaaaggctgaaaatttacggcacct<br>ggggaaaagtttatgtgacagccatatattaggttgacatttactttttgcatgatcttggcatgatcctattaaatacttgatttttcccactcccttt<br>ttcagattttatacttaccagaccacttttctgattatttcttgacttgccatgtagatcctcctacaggaagtgaacaccctgctggagtattctactc<br>tctatttac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:C3orf58:NM:173552:2/3	
0	chr3	149689178	149689484	1000565	0	-	12662; RIP_Alu_chr3_149_01	NA	NA	SINE	Alu	Yc1	gtgtgtatagaagggaagttaatcagaggaccatttaaagccattttctggctcaggttgtagaataagctattttgtttttattggagcagagtaggac<br>acaaataagatagctgtacttaaatgagtcttcaatcagagcaaaaaagcccatgtatatttgtttttccatttttcatctacttttgccaattttgagc<br>aaagttgcaaaacacactaacaagtgttcgggagtatcatcaatctcattaactgtggtgaaagtataaattggtagatgattttaaagaaacctgtcta<br>tctatctgtatctatctatctatctatctatctatctatctatctatctatcatctatctatccatctacctacctatctatcatctat<font color="green"><u>AAGAACTTGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAACTTGAG</u></font>aataatatctattccatttggcccagtaattccaacttttagaaatttatactaagaaaattagatagagatttatttataa<br>agattttccatgcattgctattcttaatcatttattttaaaaattggcaaatataacacaaatgatgaaaactacataaaacatacaacaattataaagc<br>aagcacatatatgaatatcacataaatcaagacagaatggggccaacacacaaaaaacctctttcctacttgccccaaaggtaaccactatactgaattt<br>tatttcaacaccaagcatgcatccttaaataatatgggttttcctggtttttaaatcttatatgaatggaataattctgcatatatgtgtttgtgtcttg<br>cttcttt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr3	150049493	150049800	1000566	0	-	pAlu3-149848310; Yb8AC1126; 238424; RIP_Alu_chr3_150_01	CTTCCTTTGACGGTAGTGGC	CCCATTTGCAAACTGCTTTT	SINE	Alu	Yb8	tgcaagacacatgccctggattggcacctttgtgtagtgcgctctgctttccattttgttaatctgtggagagggacaagatacttgttggctggatatt<br>cttctggcttcccatttttcactttgaagttgtattattattattattaacagtgtcatgtagacatctttgcaggggaggtgcaccaaagattgggagc<br>ttcttcctgcccaataagtgcagccatatggctaggtttgagagccttttctcccagttttaatttctctgacaataacaaggtcacagaattcaatatt<br>tcattgtcctttagaattttggaaatctaaattcattgtttttcttttaagtctcaaaacttcctttgacggtagtggcaactttatatt<font color="green"><u>AAAGAGGTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCTT<br>GAACCCGGGAAGCGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAGAGGTCT</u></font>acactgagagactggacagtttatgaggccattagaagctcagagtgcactttgtattcttgctttaaacaatatagtatga<br>gtaaaagcagtttgcaaatgggaaagcattatatgtgtaagatattcttgttattccatctactttctactgctctgctaaacatatcttagagaaacat<br>tgtagtcttctctgcaatccatataatacttttcctgttctttacttcattggtcttttgcattcttatctctgcctttctttcttctgaaggttgtctc<br>atgatatgagcaattattaggcaagctacatgtaaaatcattcagaaatgaaggcacatacatttttatcatgactcagatatcaaaggactgctgttta<br>taggatgt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	463	145	NA	intron:CPB1:NM:001871:9/11
0	chr3	150327077	150327390	1000567	0	+	pAlu3-150125897; 9502; Ya5ACA1086; RIP_Alu_chr3_150_02	NA	NA	SINE	Alu	Ya4	cttaaaggcaaggataccctctaaatgcagcaagccaggaaaactacagaagtggcctgcctgtgccactttggcaaagaaaactagggaagagagggga<br>gagaagaggaggctagggaagagagaaggagggccatttggagctgtcgtttccacctccttacaccccaccaactgctctatctgaaggctgagggctg<br>gacacctcaatgctggcacctgatttccccaagtgccttgggcttctctgacagtagtgatggtgttgtttagagatgcagaaaccacttcatccattgc<br>tctgagagagtcacgttctattcttcaggaagcatgcttacaacaccaacctaatttttaaaaaatctttcagaggcccctttttt<font color="green"><u>AAGATGCAAAAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGATGCAAAAATA</u></font>atggagccacctatgcaaatagtggtcagctaccttttgggaattcctatacactttccttgtttgtttttt<br>gtgacttttccagaaagaactttgaggaaataaagaaataaaaaatgagaagtaaatggtattttgtgagtgactttctcaacacattctctaagaccaa<br>tgcagatatcccgaggtacctcacagatgggataggaaatcagtgctccagagatccagaatccttcttttctaggctggttgagtagagctctttgtcc<br>atgttgttgcagaaccatttttgtagccatccccagtggtgttgtcacctagaagaaacttgggggagctttttacccacatagcaccctcaatctcccc<br>agcaaatacagctt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	164946870	164947167	1000568	0	-	238904; RIP_Alu_chr3_164_01	NA	NA	SINE	Alu	Yc2	actctgaaagataaatataagaatatatccgtgacattgattgaactttttaacagaacagaaaaattaataaccataaaataatgtattggtaatttga<br>caaattatagagctatttgtttattgaaacaaaaaaggaacaaaatcaaaacaaggacaagctacatcagtgaagaataaatgatattgattctttcaat<br>tcatgagtatgggatgtttttccatgtatttgtatcatctctgatttctttgaaaagtattttgtagttcttctaggagagatctttcacctccttggtt<br>agctgtattcctaggcatttaatttttttgtggctgtcataaaagggataatgttcttaatttgactctcagcctgaatgtcactgatgtat<font color="green"><u>AAAAATGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAATGC</u></font>tactgatttttgtacaataattttgtattctgacaccttgctaaaaggtttacacagatgttgttctagaaccaagaaactattaaattagaag<br>tagaaaaaaattatgcatttgtttagaaattaataaaaacacttctaattaactcatgaatataagaaaaaatttataatttttaattatttattttaat<br>ttttgactcttgttatgaatatacaccagtatatatttattgtatacatgtgatattttgataaaaccatacaatgcataatgattaatcagggtaattg<br>tgctattcatcacctcaagcatttatcatttctttatgttagtgacataatttggatatttgtccccactcaaatctcatgttgaaatgtaatctcca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr3	167872918	167872919	1000569	0	+	21709; RIP_Alu_chr3_167_01	NA	NA	SINE	Alu	Ye2	aatttgtgtatttttgatggagtcggggtttaaccatgttggccaaactggtcccaaactcctgatctcaggtggtctgcctgcctcggcctcccaaagt<br>gctgggattacagttgtgagccaccatagaggtggaggcaggagaatcacttgaacctgggaggcagaggttgcactgagctgagatcatgccactgcac<br>tccagcctgggcaacagagcgagactccatctcaaaaaaaaaaaaaaaaaatgctgactctcacatcactggtgatcttcctttgctaaaccccaggtct<br>aatgtgcttaggtattcatacaaacctactagtcatcaaataaatatggaaaacatcccacataaaatatcccttttatggagttttataac<font color="green"><u>AGAATCAG<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AGAATCAG</u></font>aatcctctaaacaaacctgtggtaaagaaatctgcttaactttgtttcacactctctctcaaagttattttaccctagcatt<br>tttttgttttctaaataatagctcataaaactatgattctatagaacaaattctaagaaataccgcattcactagtaaatcgagaggtttaatttagggg<br>aaagaaaaatttggaacagacaatggaataatgaagactatagaagagtagtgtgatcagctaaaaaaaactcacacattcaactcttccatccttttca<br>tttctttgcaagtctcaccctgctgctgcccagcagatgtcaaaatgagcaggaaaaccacattgctatacagagattccttaatggcaagctcttgctt<br>ccctaagact	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr3	175893432	175893433	1000570	0	+	239031; RIP_Alu_chr3_175_01	NA	NA	SINE	Alu	Yb8	cctcatgctgctgttctggaagctgtattttaagtcttttggcttagggccactatggatatatttctgagatactaagggtaccaccaaaaaagaatgt<br>tcggaaacctctatactaggacaaattactaagcccattcatgtttcagaatttacatctttaaaatagatgaagtatatcctgacacataagaaaccaa<br>taacaaacttggctatgtgttgtttatatttcatatgcttgttaggaggaagtatatatgtaaaaatgctgtgtaaaatactgcaatcattattgtctct<br>tttaaacaagttttcatattttacttcattttgttcctgaactcaacttgataataaaattattggtataaaaggttctatttgta<font color="green"><u>AGAAAGGTATGAGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAG</font><font color="green"><u>AGAAAGGTATGAGT</u></font>gagattcaacatacagaatataaataccaaccagtaaaataataaatgataattaattcctctgtatcactttaagtc<br>tgtgatcaaagtagaagtctaagttcatgatatctcttgtggattaagacccagtaggcactgttcttccagtactgctcttagggccatcaggagttaa<br>catccaatcactattcaccaggatgttcttggctttaattattattgcttaactttggttcatttagaactgaatgctaaagtccatgcagcttgagtgt<br>atgaaaacctgttttatgacatggagagtttactgcattcacttttcttaattcatgtcaaactttcaaatgttttacttggtagaagtggaccataggg<br>tgttgcat	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr3	182444597	182444910	1000571	0	+	32944; RIP_Alu_chr3_182_01	GAGATGGACTGGGAAGAAAGCAGG	GCTGCCACATCAGCTGTCTGTGG	SINE	Alu	Y	tcccttcagcaacctgtttagcctccctgtgcctcagtttcctcatctgtaaactgcaaatgttggtgctcatcttatgtccctacactgggttatagtg<br>cgatttgaatgaaagaactttgtgtaccacgtagaacaacacagttctcactatgattaggattaatcttaatattattgtaggtagttaagttagaaca<br>atagataaagaagttaaactttacctaagagtagaactggccttagttacctgactgaatacatttcaaaagttttatcaccccttattttaaataaatt<br>gaatagtacagagagatggactgggaagaaagcaggacctagaggtgacagagtcaaaccttattgcctgacccatgtagacactt<font color="green"><u>AAGACATGCAGCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGACATGCAGCTT</u></font>acatgaatgagccatagagatatctaaattatttgaaatttctgcattacactttttaatttctttctaagt<br>ttgatacaagaagaatatatttgttttaaaatgaagagcatcattatttaaaagaaaatacaacaaccaaaataaaccatagataatcagagtgccacag<br>acagctgatgtggcagcagataataggggaggaaacctggggagggatagaaagagctcaaattcattgggcgcttatgttctagacactgtgataagtg<br>ctttctacacctggttgtatttagtcctcttgacaagtctaaagggtagatgctggtagtatcccattttatagattaggaaactaggacataagagaga<br>ccaagtgatttccc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr3	183477553	183477554	1000572	0	+	239223; RIP_Alu_chr3_183_01	NA	NA	SINE	Alu	Yb8	acaggccctgatcccgaggagcactgagtgctgtccagctgctagaactggccagtgctgcatcttcattgcccttcctctggttcagttccctgtccag<br>aagtccagggagtgacagctgtgtttgggcaccgcgtagcaggctccagaggggcctgcactgcaaaacctccctgccagggctcagtggggaaggcact<br>tcttatcacagcagatttccatccacctgtttccttggccttcctctctcagcagagtatactatacagctttttaattttgtgggtgagaaggttcttg<br>ggacctttttcttattcttccctaagtttctcatcattttggatcagcatctccctactccttactgggattctcctatttcatccatg<font color="green"><u>AAAGAAAGGCA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAGAAAGGCA</u></font>ccacagaacaatatttgtattttcagagggctgagtttaattttgaggcaaaaaaattatacagtcttcaaaagatgtctat<br>gattatgaaattctcaccatgttgtaactcagatttttcttaaaattaaaaagtatacatttaaaatgttcatgtttttccagcaatcaatcttagcatc<br>actaaagataacctgatatgatatgcctcctgggaaatgcaatacatacattgattcacctaatttttttccttccatcatggtattacttatgtactgt<br>aaaagtcaaagtagttcaatgagttttgaaaaatctatgcacccatactactgtccccaaatcaagatacagaacttttccatcacctcaaaaattctcc<br>tgtgccc	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr3	189787544	189787858	1000573	0	+	511; pAlu3-189706776; RIP_Alu_chr3_189_01	NA	NA	SINE	Alu	Yb8	atatgtgacagttccctgggagtttctcccctcctcgtaggtatttttagcaaaatagtccttaaacattgttttttttttttttaagttggagtctcgc<br>tctgtcgccaggctggagtgcagtggcccgatcttggctcactgcaacctccacctcctgggttccagcaattctcctgcctcagcctcccgagtagctg<br>ggactacaggcacgcaccatcaggcccagctaatttttgtattttttagtagagacgggggtttccaccatattggccaggctggtcttgaacacctgac<br>ctcgtgatcctcccacctctgcctcccaaagtgttgggattacagacgtgagccaccgcgcttgccccttaagtgttgtttt<font color="green"><u>AAAGAAAGTTGGCGCTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAAGTTGGCGCTCT</u></font>actgaagactggagcccaagaagacatttatagggattgtttattttcatgttgttactacactcca<br>tggtctgcaaaaccagagtgccagatgttaaattctatcagcataatgcatctttaattaaatattatatacgccatacaattaataatgtggtctgttt<br>ccaaaactttattaagaaattaccataattttgtataataggctaataaaaaggcactgtactttgaaacagcctttcgtaaagtggttatatgatttgt<br>atctgttgaatttggaatttagattaagagattgtgggccagaattatctgatgcaatgtactcaggactttaaataagttgcgaatcttgtagggtcta<br>ctattatttggcttc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LPP:NM:005578:5/11	
0	chr3	193338792	193339117	1000574	0	+	pAlu3-193258024; 22416; RIP_Alu_chr3_193_01	NA	NA	SINE	Alu	Yb8	gtatcttgggggacaatccaacctccaggtcttggttgacttacactagtcaacatatctcaagtctctggccatggtcagtcactgaagtgtggacaga<br>tgatctaaatcaggccaacgaaatgtaagatgtcgtctgggggattctaatagagaatagatgatataagcatgcaggttctgaaactactaaaggaaat<br>tctgcctctaagggagaagttatacatggaggtggacagagctgagagaactacaaagtaagcctcgatggtgatgctgtgtacctagatattcgagatg<br>aagcgccagtttggtttggggattctgtctgagcaaccagaagcatcctagcagatacagatgttcaaacaaatacaaaggctgtatt<font color="green"><u>GAAAACCTTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAACCTTTGA</u></font>gtaacttttcgtttttattgatctcaactcagtttttcttccacctccttttctgaacattc<br>ttcccaaccaagccctgttttccaagtatccatctttcattcaaatgatttcctctacttgagaggcctttgtcgtccccctttatcactcagcaaatat<br>ctgttctttttcaatcgctgtcttgcctctaatccctgatgatgcctttgttgcctcctcagtggtatataaaatcttttttgcatttatcatagcacat<br>acttttaggtattgcattatttatttatgtgtctgcctttgttgttgttgttttgagattgcaattcagtgtatgatgcctaaactcaactgagcctcta<br>gttggtatgttatgaataaaagaata	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	193545889	193546185	1000575	0	+	pAlu3-193465121; 13748; RIP_Alu_chr3_193_02	NA	NA	SINE	Alu	Yc1	ggcagaaacatcttccaagaaatctttgcatgttttgaagcttttagatttgcatcctctataaacctttcatcaaaaactatgttgccaaaatcaatac<br>tatggcctactaggtttattcattaattcatcacatatattccagacattgtgccaggcacttgcaatacagtggtagaaaggacagagatggtacctgc<br>catcatagtagttaaagtctaaaatagataaaagtaaccacatgtgtaatatgtatccatctttacagaccaggaaactgatactcaaagatactgtttt<br>cccaaggttataaagtcagctagtgaaaaagctaagctgtgaacctagattctggtggctacaaagctgtaaaatattgttgctctt<font color="green"><u>AAGATATAACATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>ATATAACATA</u></font>aaattctaatgataacaattcaagtagttgtgaagaaagtaggaaaaacagactataataagaaaatgtgaaaaccttacaaggaatgtt<br>ttagccaagtagaaccatcctgctcaaaaggtaaaaaatctttagtttttcttagataaaattacacacaggcaacacaagcacacttatttgagttgat<br>ttagatatgctcaaagctttgcacgttgttatcattaatacctaaataagaaaatatgactgcctaattccaaaaatattaagtggatctatagaaataa<br>acataatgtggaaagattttttttttttagaaattagggataaaaaaggacttgaaaaataaaatgattattttgtccttactattctctacttcaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FGF12:NM:004113:3/6	
0	chr4	9561408	9561638	1000576	0	+	2013; RIP_Alu_chr4_009_01	NA	NA	SINE	Alu	Yc1	ggaaataataatgagatgaacttccaaggctacaacactcaccacacaaaaagtggttttgagaattggatgtgagagaagcacccacatagagcccccc<br>catgggtcatctttcaagaaatgctccttcccctattcctaaaacattttctatttttcaaagggtttggatgtcctctgccttgcttggttctcaagca<br>atcttatgggaaaaaatgctcaatatcactaatcatcagagaaatggaaatcaaaaccgcaatgagatatcatctcacccctgtcaaaatggctattatt<br>aaatgacagatgctggcaaggatgcagagaaaaaggaaaacttaaacactgttcatgggaacgtaaactagtatagctgtg<font color="green"><u>AAAGAAAACAGTATGGAGA<br></u></font><font color="red">GATCGAGACCATCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCTCAGCTACTC<br>GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACGCCAGCCTGGGCGACAGAGCGAGACT<br>CCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAAACAGTATGGAGA</u></font>tttctcaaaaaactaaaaatacaattaccattcaatccagcaatctcacc<br>tctgggtactactcaaaggaaaagaaattcatacgtcaaagggatacctgtactcacatgtttattgcagtactattcacaatagtaaagatatggaatc<br>aacctaagtgtccatcaatggatgaataaagaaactttggtatatatacatcatggaatactatttagccattaaaaagaatgaaatcatgtcatttaca<br>gcaacgtggatggaattggggggcattaactaaagtgagataagccaggcacaaaaagacaaatattgcatgttctctctcacttatatgtggaagctaa<br>aaaatttgatcatatggatgtggagagtgta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SLC2A9:NM:001001290:6/13	
0	chr4	9565933	9566237	1000577	0	+	Yi6AH16; 10548; RIP_Alu_chr4_009_02	AAGAATCAGGGAGAGGAGAC	GTTAGAGCAGGAGTGAAAGC	SINE	Alu	Yi6	atggtcaggcagttgttaaactgtctctctaaaataatagttggtcacagctggcaattattgggaaaggcagtcagtctcccaatagaaaaaaacctaa<br>aactggtgatcataagcttcccgacaagatctcaggagttgggcgagtgggctcaagcatatgcacgaagaggcaaaatggcagagtttacctggtatat<br>ggccttcctctgggaacttttgactggtgagggaaaaacgcctcaagtcagcatgtgcacaacgtcagtaaacacacggcgtgtgcggcccctcctaagt<br>gctggcaggccactgtgcatgcaaacagcccaatccaaggggaagaatcagggagaggagacgcaaccccctggaagcataacatat<font color="green"><u>AAAACTCCAAGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAACTCCAAGTC</u></font>aaagttcaaaccgtgcacttgatctctcaagtcgctcccttggtgctctccaagtgtactttacttcctttcattcctgctg<br>taacgctttttaataagctttcactcctgctctaactcttgcctcagtctctccctctgccttatgcccctcgtcaaattttttcttctgaggaggcaag<br>aattgaggttgctgcagacctgtatggatttgctgccgcggacacctctgtctctcaaagattccagatttgggtcagtattaaccttttgagccccact<br>ggacattctctagggattcttattcagaaagtctgaggtagggctcaagcatctggatttttttttttttttttttttttttttgagatggagtttcact<br>cttgt	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	494	176	NA	intron:SLC2A9:NM:001001290:6/13
0	chr4	16811864	16812164	1000578	0	-	689; RIP_Alu_chr4_016_01	NA	NA	SINE	Alu	Yb3a2	tcacctattctttctatattgggaaattcaggaatattaattctacaaagttcattatcattagtgagacgtttagaggctatctcataccgcttattct<br>ttctatattgggaaaatcaggaatattaattctacaaacgtcattatcacttgagtgggaaaaaggtgtaaagtgacaacaacctatgaatattgttgca<br>aacttaataacacctcaaaattcagcagaagcacagttgttggaaaatgacttccactggacccaaaagaacactagaaatgttttggaatcctcaataa<br>tgtcaggagaacatggccttcacaggagatcaggaactgattagagaggtaataggatgggaaataatatgacattataaattcaaaaggc<font color="green"><u>AAAAGGATA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAATCCGGCCTGGGCTAAAACAGCGGGACTCCGTCTCAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAGGATA</u></font>agacataaaggcaacaaaatgaaataaggagggatcaggatgaggaaagggatgattaaaagaaagctaatattgcaatcagagaattaa<br>aatctgtatttgaggaagtaaagagtagaccttagtaaatcaaattaattatgtggaaattaaacttcagatgcattctgagacagagagagattatata<br>taagtggaggaaaaaaaatcatctgtatatagttaagttataggtaattttattttcttttttgtttattagtttcaaaaacatttcttctataataaat<br>aggtattaattttgaagcagaaaagttttttttctttccttcaaaattgtgtttttaatatacatttcattcctgggtacctatccaatgcaaacttcgt<br>t	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	23330781	23331083	1000579	0	+	238456; RIP_Alu_chr4_023_01	NA	NA	SINE	Alu	Yb8	tcgatatctaaagaaagctggggattgatcgaaactaagtagttgaaaatgcatctctatccatgacttgaaccacaaaggtggtgggaggcggggtaaa<br>ggaaagagggataggaacttggagcaggggcaagaaagagagaaaatttattgaagtagagaaagataattggtatctggaatttcctctgcaatttaag<br>gctgtcaggccagcatcttgcacatcttcccacattgaacacatcgctattacggaagcagagctctattctaggatagattaaagagctgataggtgaa<br>accagctgcagagagcatctgttttgtttttgtttttgtttttattttttttttatttcagagcaggagtccttgcagaact<font color="green"><u>AGAAAAATACAGATTCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGACGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AGAAAAATACAGATTCCA</u></font>gagttcttaggaggttgtagtctaggagggagttttcacaaccttccaatctttaaagtgcactgagctcaatgaatcc<br>ccatgagtccttccaacacgtgacttgccatagcaactttatcttccaaaatattactggggtgaaaagacctggagcacagcttcacttttacccaagg<br>tatttcctattcattgccttattatttgactaacgcctgggtggctatgtttgcagatcctgtcttctaggctaccgtgaggagttgctccattacttat<br>ttcctaaatgaatagaactacctcttctcagtcatcacagcctaagcaaatggtttgaaatgataaacctgccaaacagcttgtggtcacacagctgact<br>tgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	36146317	36146632	1000580	0	+	pAlu4-36304466; 238945; RIP_Alu_chr4_036_01	GAGGTCTTGGTTGTGTCAGTGTTG	GTCACTGTCCAGACAGACTTATGTG	SINE	Alu	Ya4	aatgcttaatgtcttattcaagccattttactacagtctcaattagtgaatatattcataaatggtggttgtacggaggtcttggttgtgtcagtgttgc<br>tactaagttatgagatctgttcaaagacaaagaaatattgattttaatgtttcagagcttttaagactaaaattttttggagctaaacaatatattttaa<br>caagcaaaattttttaatttttaattcagttttcaatttttggtcaatttcatattaacaaatatcttctatattaattcaaaggattaaaaatattttt<br>caaattctttaaaaataatttttgcttattttaacaatttggtctttggtcctgaaacagtaaataattgagtaagtggctat<font color="green"><u>AGAAAATATAACGGGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAGAAAAAAAAAAAA</font><font color="green"><u>AGAAAATATAACGGGTA</u></font>ggtaaaggaaaaatgatttacttcttgtactagaaaagaaaagcttttatgaaatagcacataagtc<br>tgtctggacagtgactatttaagtctatcatcagaatatttccagtgccattgatctaaaaattagagatctagctttatttgtgaacttcgacaatttt<br>tagcaaatgtgttatattttattcacaaagtttatctgagagttacatacagtaagaaatacagtaaaatcagttttgtcaaagtccactcttggtcttc<br>caaaaagatatcatctctggatgtcaagcatcctcttatactttgtgttcaagtgaatattagttcaagctgacactaaggccagagacatatattgggc<br>agaaaaataaaaggga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr4	36519156	36519484	1000581	0	-	16933; RIP_Alu_chr4_036_02	NA	NA	SINE	Alu	Yb8	acgttgggttagtaacgagacgagtactctagagaacttttgcatttaggacctctatcatgttaccgtgtgaacaagcatgggctaggccccatgtaaa<br>tgagatgagccatctcagccacacgttttggggtggtttgttatgtgacaaaaaaataatatgcttggattaagtagaaggaacaaaccctaccatacta<br>taaagaagggcactacactaaaaaaaaattcattttcctaatcaatattcaagcctttatatactttcaaggtcaatgatagcttagtaatcatcaacct<br>actcttgtggttactacttaacaaattctctaagaatggtgaaatttttctttctagaatgttcaggcattaaacattctccattt<font color="green"><u>AGAAGATTCATCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAGATTCATCCA</u></font>aaagtgaagtaaaagggaaaggcaacatcttttttttttttattatactttaagttt<br>tagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccgtgctggtgcgctgcacccactaactcgtcatctagcattaggtatatc<br>tcccaatgctctccctcccccctccccccaccccacaacagtccccagagagtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccac<br>ctatgagtgagaatatgcggtgtttggttttttgttcttgcaatagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaa<br>ctcatcattttttatggctgcacagtatt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	38707486	38707753	1000582	0	+	238899; RIP_Alu_chr4_038_01	NA	NA	SINE	Alu	Yc1	aaacaagttgctttatttttaacttaggacttcagagggcttattatttcgaaatcaaatctattaaacatcatgagtatattatttctcattaagattc<br>cttttgaattcatttcacatgttaaagacagggtatcagtgaataatttataagtaaaaattattttataatatttatcttagaaattaaagtgaataga<br>acatgagaaaaaatgaaaaaaaaggacaagaaacgaatggagtaagactaggcaggggaatttcacaaggttaattgcagcacttctagagcactcttag<br>cttaccatcaaataattttactagctattttatttagcattagttgtcaatttaactcatttcataggtcaactattattgtgatt<font color="green"><u>AAGAACTAATTTTT<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGC<br>GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACTAATTTTT</u></font>aaaaaccaagacaattat<br>gtccaagttttcttcatttaatcaatatgggactatattaaatgaggctataaaaagatgttactggtgatccataaaccattagaaaaaaataatggtt<br>tttattattattattttattattattacacaattgcatgtgtataacattttgcctagtaatcaactttttgtttatggcagctctgtgcaaaattcctt<br>ctaccactaaataatgtaaaagaagacagtggtttttgaacatttttgtttgttggccccaagtagggttcctttgaaacaaaattccccaataaatcca<br>cctgagtgtggtggtatgtgcctgtagtcccagctgcttggggactgaggcaggaggattgcttgagc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TMEM156:NM:024943:1/7	
0	chr4	40706022	40706023	1000583	0	+	238217; RIP_Alu_chr4_040_01	NA	NA	SINE	Alu	Yb8	aatgataagttaatggatcatgaggcgcattgccacacccatctagacttgggacttggttttctctgtgtataattctgcttttgtacactttagcaat<br>gaatctgattttgaaacagttactacacaagatccatctagtttcatactctgtgtcttcaattttattaaatcccaaactaaacataaaattacatgtg<br>ggtaccactgaaacctgtacccaggaaggttcaaaatgatgcatcttttcaacgttttcataaagcaaacatgaaacactaagtgattaacagagagact<br>atatacagtgtgaccaacaggtatttatttatctgagccatcatgcttactacctggggccactgagggaactgtatctttga<font color="green"><u>AAAAAAACCCTAACTAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTGAAAATACAAAAAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCANAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAAAAACCCTAACTAG</u></font>gcagtagcaagatacaacctttcttttagaatcagggccaaggcactctttaacttttctaaactcctatg<br>aaaatagtcatttcacagatgcttttcctttttcaaatagcctcttgttttcttaaaggacagactacagaggaggaaaagggcagccacatattgtata<br>catgattgattgtacaaaaagaagttactaaacagctggagggggcgattcagtagtaaaggaaaatagaaagtagtcagtctctaggttagccattgca<br>ttttattgtataaatagcattctaacttggaaaggatgcccctgaggtagaaatgagtctatttttctaggctccccaaagtgcagtctacgatccaaag<br>ataattgcatca	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:APBB2:NM:173075:6/17	
0	chr4	41139970	41140051	1000584	0	-	13233; RIP_Alu_chr4_041_02	NA	NA	SINE	Alu	Yb8	gtttacagaaaagagtttagccattgcttacaaatactgtaaattaacagatcttcgtttctcctaggaaatggtacttttggatcacatgtgaaggttt<br>aaaaaaatacagctgccctggcttcctgaaatctggaaagctttacagcatgaaagaagaatggtttcattggataataatccatctgcaataagagcaa<br>agtccatactactattaaatgtgtttatccactgattcatctgaatattccttgatttgctttaagtaccataatcaaatgttgttatttaattcaacaa<br>cgattcaggaaaagcaatttggaatctcacaggtggtctgaattcactgtgttggttacatttgatgcacttcccagagcag<font color="green"><u>AAAGAAAAAAAACATCCA<br></u></font><font color="red">GATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAAAAAAACATCCA<br></u></font>atatgatttttttttctctttaccttggagcataagacatgaagcttttatgagggaaatcattccccaaaagtgaaactgttgcttgctagcttatgtt<br>tccatttaaacaaatctctaactaaacacacatgaaaaatgataggacctttcctttgataaaaatctagcatctaatattggcaggcaaagtttaagtc<br>acttcctgaattgctaaacaaacagctacacaaaagaatcacacagtacatttgtatgtttccctttcatttacttagcaattcctttcttcatattaaa<br>aatcttagttttccagcaattattgtttaccctggttaaatgactgatgtataataatgtaattacatgtgatacaatagag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:LIMCH1:NM:001112718:1/26	
0	chr4	44204152	44204452	1000585	0	+	Yg6AH44; 9369; RIP_Alu_chr4_044_01	GAAAATTCTGGGATGATTGA	TGAAAACTACCAAGGGTGAG	SINE	Alu	Yg6	acccacaggataggagtcaggggaggaaggtattgttgttccttaaaaggtgtctatatattactcaaattgtgcagcactgttctagtttgaagcagaa<br>tatggtctcagtgtgttttagccttgcatgaccttttgtttttaaaatgactctttttcttttcgtctttgctatttaccttggaataccttcctacaat<br>attttacttttgtggctctcatgatacagacatggacttttctctctctggtatataccatctataaatcctaggattttttactcatagaggctgggca<br>ttaagagtacacaccagatttaatagatagtgaaaattctgggatgattgatgatattcagaaccagaagaacttggatgtgt<font color="green"><u>AGAAAAAACATCAATAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AGAAAAAACATCAATAT</u></font>caggaaagcagggaagccccagtgaagacctcacacttaatttttttattcctgctcctcacccttggtagttttcatggca<br>ccttcaggtgatgaaaatgaagaaagacagataaaatatttaatcatcaaagtttataaaacttgtgtgaaagtttgctttactgattcaggcttaagac<br>aggatattatctacttcaattagtttggaatacccatgagggcagtaaccacatataccttgtttacagttgattccaacactaagaacaatgaccagaa<br>caattgctcagtaaagactgtatttatttacctcattatttctagtatattcagcgtatgagggtaagaggtggaagatcaagatatcggtatctgtaaa<br>g	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	464	146	NA	intergenic
0	chr4	52917199	52917200	1000586	0	+	17800; RIP_Alu_chr4_053_01	NA	NA	SINE	Alu	Ya5	gtagaccaatgtgttgatgactcacctcaggtttgtgtattgcattgttttaaaatatttctctttgtgcctcaaatttagaagggaactcaagacagca<br>gtgaggaaacaagaaataggagaaaatatttgtttgcatttggcaaaagagaagccgaaaaagagcctgggctgttgcactttacaactttgctcccttc<br>ctccacccctcgaattggggttcatttataacagggaagcagcttgacaagaagcaaatatgacttatctgtaatattttatttattttaaaaaagaaag<br>aaagactagaaccaaatctgactaaacttaaaacttactaattttgcatggtagaaagatgaatgtttgtcatgtgggtctttatt<font color="green"><u>AAAATGTATCTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCANAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAATGTATCTTTA</u></font>aaaaaggttctaaaggaaaaagaagaacagaagattcaaaacatttgatcagaacatttggtaccagcccttgcattaccatgtca<br>gtctatgtgtccctgagcaagttattgaagttctctaagccttgtgatcataagacctgtcttttaggatgtggttaatattaaatcagaatatgtatgc<br>agaacacccagcattggacctagattcatatgttcttaattcatggtggccactatggctactttctgatttcccaaaatgtgtctgctacagttttaaa<br>tgtatattctctccgaaattcctgttgtaacttaatccccactgtggtggtgtattagtctgtccttatactgctaataaagacatacccaagattgggt<br>	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	57842788	57843099	1000587	0	+	238724; Yb8NBC71; RIP_Alu_chr4_057_01	GTGCTGAGCGCAATCTTGA	GGACCAAGGGGTGCATTTA	SINE	Alu	Yb8	gatttgaaaatgcattttgggttagcaaccccatttccccctgatggggggataagggacgtgaataccacttttgcactcactggctgatcgtgtgtgt<br>atgtgtgcacctacatgtgtggtggagggatgggagggatgggagaaggccatgcaggaggaacgtgagaaataagaaggaacataaatattctcccagt<br>cctttggaaaatgcttttgtttctgatttttacccttggtgcccaatccaagcaggagtgaggaaagagaaatgggcactgagtgggagaatgatgaaaa<br>agatggaggaccaaggggtgcatttactctttgtctttatcactagcatctaatatttgcctctgaaggctaaatttcaattcttt<font color="green"><u>AAAAAATATTCAAC<br></u></font><font color="red">CTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAA<br>AATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTG<br>CAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAAAATATTCAAC</u></font>ttaattttaacttttatcttagaggactcagctgtacgccacatatttaatctaatcaagattgcgctcagcac<br>tgctttcagtccttgctgagagctctattgagtcatttattaactcgatgacttaaatggaattcacaggccagacacaaatctaagagagaggaggagg<br>ctaggctcaggaaggaaaggggaagagagttggcttatttcaccttggtaatagaaggccctggacaatataacaatggtctcgagacccaggaatgttt<br>gttatgaaaaggatggagaccactgtttgccatcagtatagagtggacaaatagttcattgttttattttgttgaattttaacagtcccttagaggctgc<br>tcctgatcaagg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	61	493	167	NA	intergenic
0	chr4	68719503	68719809	1000588	0	-	16457; RIP_Alu_chr4_068_01	NA	NA	SINE	Alu	Y	aatgtgtctatgtctcttttttctatgccatttttataaaattatgagacaagcagcctactcaacacagtagaagcttaatatgctgaatcaagtggca<br>cactgatagtacaagcgggggatctttatacttgcatgcttgttcatttgtgctatgcactgcttacatccacttcctcatgagaactgcactggaagag<br>ctcaggtttatatttaaaaaatttttaaagatttatacaaactttaaggttttgcccagaaaaaatattgtcttttaataatattttccaggttaaggtt<br>tgttaaggaataataaaatacatgaatgagtgaaatccttcttagtaaatgctaatgaaaagaacttttcaaaaattttattgttt<font color="green"><u>AAATACTTTTTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCGTGCCTGTAATCCTAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG<br>TGAAACCCCGTTTCTACTAAAAATACAAAAAATTAGCCGGGCGTGTTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAATACTTTTTCTG</u></font>gattccaaaaataagattttcagattatctcttgtataaaagtaaatttgaaggaatagaaaaaccccatacctctaaa<br>agtagctttttcttcttggttctgtcatattttctttgactaaatattagctctggactaataaaatacttttctggtacatcttccctgaagggctcct<br>aagggttttataccacagaggaaaattctaactgaaatactgacatggggattaattacaaagagacattagtgcttgtatgtaatatagtctggtaaac<br>aattcaaaaatactactaggtcataaaaattccacttaattttttttgcaagtatattatgtttatgaacacctccaggctgcttataactcacccacct<br>cttttta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	70448264	70448265	1000589	0	+	5298; RIP_Alu_chr4_070_01	NA	NA	SINE	Alu	Yb8	cagcagatgccaaaactgctggtatcttgatctaggactttttagcttccagaattgtgtgaaaataaatttctcttctctatagattgatgaatctctg<br>ttatttttttgtaacagcaaaagtaggttgagacaatatgtgaatctccaaaagagaatatttgaaataaaataagaatgtgagggtaatagatactaga<br>tccaaaatccgattaggaaacaaaatgataaaagatataggtgagatgttaaattaatttgaaataacacttgaaagaattgataaataaattagaaaca<br>gaaatcaaggcttatggcattaaagtgaatttactaattgaaattatttaaggcaatctcaatgagctaagaatagtaaaaattaattaaaaca<font color="green"><u>AATTAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AATTAG</u></font>ataatacagaatgaggatagtcaaaatattttaacatagggacaactgaaatctgatgtcccaaaagcagagaaaaaatg<br>gaactgaaaattatcctaataatcaaacaaaaattaatttctagcataaaaaatgaatatattaaatcttggattagctgtgttataaagacacactatt<br>agcctggaaaatgtataaaatatataaaaatatattaaaattaagcttctgagtttaaaatgtaatgatttttttctagtcaaaatggaaactttaaaaa<br>aaaaatatttgacagatcttaaaaactctttagtagcatttaaagctggaagactgaatattatttacgcagttccgaagggaagaacgtgagagctaag<br>tatatgatattaag	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	73048508	73048820	1000590	0	-	pAlu4-73230177; 238850; RIP_Alu_chr4_073_01	NA	NA	SINE	Alu	Yb8	aagcaaaatataaacaatacaagaaaatcaaactcacagtcagtcccatgtataatcataaacaatcatctaaaaaaaattagaaaacttttacaaggaa<br>tataaatttaggttaacatacaaaagtaagaaaagccatgttaaaggtgagttaaaagtgcaaacagtattcagtaaaattcagtacttttttattttaa<br>aaactttgcaaatttacacaagaagaaaactttcttataatgtctaagggtatctaccaaaaatgaaaacacatattacatatagtcaatagtaaaagtt<br>aaaaatacattgtttaaaatcagtcacaacacagagattcagtttttatctctactattgtacagaggttctaatcaatgtaat<font color="green"><u>AAGATTACAAAAATAA<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAGTTAGCCGGGCGCGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGATTACAAAAATAA</u></font>gttacgatgaacaaaaatcacaatgacgtaagaaaaatataatttgtagattctataaagaaaatcaaata<br>ataacttctatggagaaagtattagaattaatagagtttagcaatgttattgtgtataaaattaattacaatagagagttactataatccaaactgttta<br>ctctaaaatctaagtgtactttgaaacgtaattcagaaaagattgcatttataataacaaaagttagttccgatcctttataagttgtactacatgatat<br>aaaaggtaaataaaagttattcagttcatttaataaggctaggaaactgttgatattgagctcacatcagaacaattcacacacaaaaaggatcatttca<br>cacacatatatag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	80424767	80425080	1000591	0	+	238695; RIP_Alu_chr4_080_01	NA	NA	SINE	Alu	Yb8	aattactaatcatattaatttgaaaggctctacagaggttgtgaccctaagtaacaatcccatgtccctctcagggctatagtgtcccaccaaagtcaat<br>gcttaaccatggctctggagtaatggaaggcaatatgaatcagtataaaggagtctcatcaacaaaatgcttttctatttacttcttaaatcgaatcttg<br>actgtcatagggtatcttcctctgaggtagagcataaattttgatatccatgtctatcaatcaagtttgattcaagagtatcaggttgattatttttaaa<br>aaatctaccattagtcatcataggtaacagcctctagcataacagattctagttattgttgtttcttgaagaatgattgatgtctt<font color="green"><u>AAAGAATGATTGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAGAATGATTGAG</u></font>gtctttaagaatgtgcatactcagtattaaagtattggttaggaggtaggtgactaatttagcacatttttt<br>gaaagagtgttggtagattctttagtggggtgcatttaaaatcaatcagatattacactgtagcttttgcagcattggacagaaccagtagatggtggtc<br>ttaagttgcaagttgcttttacgctaacacctgtcagcatgtgaaacaactactgctttcaacaaaatgttgaaattcacctttctatttatcagatgcc<br>ataaattggatgaaggtggcacatgagagcattttgaagtgacatgttaactgttgtttatttttcaaaagcactgatctgaaagaacacacagactatt<br>catcacagcacttt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	82210555	82210860	1000592	0	+	3330; RIP_Alu_chr4_082_01	NA	NA	SINE	Alu	Yc1	gcttgcttattgcatcctagctactgcgtggagccagtgacccctcccaggttaaccagaatgtgaccttgctactgtgcagaaatagtttttaggcagc<br>cctctcttccagtgattccagagaaggttgaagaccatagagttttgtctttctctttactgtgaactaattatccattagtgaggctcttcagtggaat<br>tttgaagttacatttagatgttcacataatctctctctctttctctctcctcctctttattgttctctaagagaaaataatctgcacatccctgttctca<br>gcgtcatttattcctgcccaaaaagaattctgaacgattgcatttgtctggtgacggctgttgctacactgaaataggaaacatc<font color="green"><u>AAGAAATAGCTTTAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAAATAGCTTTAC</u></font>tctttaatctaatataaagtattaaatgccaaatggttctagaatggagttccttttgatcttatgttcgattaaaact<br>ttttcaggaaatagattcagaggtaccttttgtcacattatttgttgttcagtcacagaggacataggaaatttagcatttgtcatctttttctatgctt<br>tgaatacttcttgaatttacacagcttgtaacaaacccatcaaaccctttgaatctagaaatatttgactgaggacaggaatgtttagaacactctttct<br>gcttaaaagcaatacagataaaggagaaagagacagagagagagagagagattccatcaatatctaagcacagcttcaaaattccactgaagagcttcac<br>aaacag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	84440744	84441017	1000593	0	+	290; RIP_Alu_chr4_084_01	NA	NA	SINE	Alu	Ya5a2	taattggtttttgaaaccaaagtgtatgagaatctacttaagaagtatactctagctattctttttcttactctaaccaataaaaattaatgctgtaaaa<br>gaatcacactgatctcacatggtatgatattttataccaacccacatacctttgatagcaattatataaaggtatattttgctttagtgaatgtgttacc<br>aagaattatgtctttttagagtaaataatttaaatgcgttgagtggatcttgatatgtcaagttattttgaaatgcaaacttattctctaagataactgc<br>tagtttgtgttcacatccttttgctttagactcttagggtgagttatactcatattagtaagtattcatacataaatttcctgaatatt<font color="green"><u>AAGAATTATTA<br></u></font><font color="red">CACTTTGGGAGGACGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCCATCCGGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAG<br>ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTATTA</u></font>gaacttgatatagtt<br>gactttgtcttttgctccctgtccaaactctctattctgataaacaccaataaatttattgaaagtttggaatgaacaaggaaaattacttacttggaaa<br>gtaatccatgaggtcccaaaggtcttagaaggtatttatccacttgcttgttagaaaaaggatagggtaaccgcaagtacttggtgacattatggaggtt<br>tatggcatacagagttaaatctccttctttataccttggactaaaagcaaagaggttaacttaatagaaatatgtatctaatttaagcaattaaaaactc<br>aattacaaatgtgatcctaagtattagtatccataatgacaatccataatgcatcctaagtattaggatccata	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:HPSE:NM:006665:12/13	
0	chr4	86879794	86880102	1000594	0	-	pAlu4-87053447; 238106; RIP_Alu_chr4_087_01	NA	NA	SINE	Alu	Yc1	gcctgaacccaggagtgggaggttgcagtgagccgagatcaccgcactccagcactgcagcctggacgacagaggaacactccgtctaaaaaaaaaaaaa<br>accccaacaacaacaacaaaaagaatatcccagatcggaggtaggtactttcaatagaagttctcctctgagaagaaagcatttaaatagagatttgaat<br>gataagaaatagccaaacaaacaaacaaaacaaaacccaaaggcatgtactctgtaaggaggggatccagcatgtgtgaaaggccatcgatctgaaaaat<br>ctgtggacattcgtgaactatgtggcaagtctgtgtggctggagcatgggagcaaggggcgataggggatgggatcctgtaggctat<font color="green"><u>AAGATTGAACGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGATTGAACGTG</u></font>gagttttcacgatatggagagtgtaatgggaagctgttgaaggctttacacagccagttagcacaatttaaaatgatc<br>tttctggaatttggaagaaaatggattctagaaggattaagtgcagaaatctaacagaaagatgatttggtatacatgagaagaaacaggagacagagag<br>aagaaaaccgagcagagatatattttggaagcagaatcagcaccactggttgatgattggatgtcaagtgtgagaaacagagaggatgcaaggataatgc<br>cctgacttatggcaagtcctaagcttttcgttcagttaaatgcatattgaccacctgaagatggaaatgcatagaagggttctgggtagactcaaattac<br>aaagcctac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ARHGAP24:NM:001025616:3/10	
0	chr4	87285393	87285559	1000595	0	+	15570; RIP_Alu_chr4_087_02	NA	NA	SINE	Alu	Y	atccagaaactccatgtttgctttcaggacaaaaataaaggaatacaaatgttaaaaacttacagtgagctgctaaataagtacaactctatgaacacaa<br>ttggataaatttgcacactatggacacagtagctaagtctaagtttctattccctacccggtaatatgtttaccaaaaaaaacccaaaaaaacaaaaaag<br>atatcaatgataaagcacttctaccaattagttttatcctccttaaaatacaacgaagcagaaaagtggcaattttacaaaaattactctgggtccagtg<br>atcttttctagtatttttttctacttttcctttcaattgctttttcctatgtagcacaagggtcaaaagatttcttggtccattc<font color="green"><u>AAATTTCTATCTCTA<br></u></font><font color="red">GCCGGGCGTGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGAT<br>CGCGCCACTGCACTCCAGCCTGGGCTACAGAGCGAGACACCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATTTCTATCTCTA</u></font>tttgatgattttagaaaa<br>ttagtgatgaaatattatacagcataccaaacatgtgttattgtaagcaaaaatagtatttctcaatgtttctgtttcacaaagaattactgcttctttt<br>caaagctacttctatatgtaccatcctgcttcctccgaaattgttctctaacaattatttttggtttcttgagtctctccatttctctctgggaatctct<br>cagctgcctgcttgatgttcctacatctctctgtctgtgtgttctctcttcctcttcctcattgtgtatctgtcatctatttctctctttcttgctattt<br>ctgtgtatctttcttcttctgtctctctgtctcattctcctcttttactctgtctcagagcctctct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:MAPK10:NM:002753:4/14	
0	chr4	89256711	89257028	1000596	0	-	pAlu4-89430373; 238956; RIP_Alu_chr4_089_01	NA	NA	SINE	Alu	Y	aaccccccgcgctcaagccatcctcccacctcacccaagcagctgggactatagacacatgccaccatggctatctaatttttgtattttttgtagagtc<br>ggggtcttgccatgttgcccaggatggtctcaaactcctgagctaaagcaatctgctgtggcctcccaaagtgttgggattacaggtgtgagccactgtg<br>accggcagacactacttaattttctggtaactatagattgcagctttagcccttgagtgggtatcggtcaatagagtggttagtcctaaacctgacttag<br>atgggccaaaatttctaacaatcttggacagcatggttctttttatttcaaattgaaatgtgtgatttttaaaattttagat<font color="green"><u>AGAAATGTGTGATTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGTGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATGTGTGATTTTTT</u></font>ttaatggcttgtgcggtctgcatcattttagatatatttggatatgattacaaatgattcccta<br>tgatcctaaatataattttagatattcattggccatgtttcttaattaggttttaataaaggggatgaactaagagtcagacttcaggccacgctgagtt<br>cagatgatctcatcatccaaagctgaatggttcaggtgtgctgtgctggccatgttctatcgagaatactgctcaggggatttgttctctatttggaatt<br>acagcagcacagcagttgatttggatttctgaattaattaattaattaatttacctttgagacagagtctcactctgtcgcccaggctagagtgcagtgg<br>tgctttcagagctcactg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ABCG2:NM:004827:7/16	
0	chr4	91601233	91601541	1000597	0	-	7235; RIP_Alu_chr4_091_01	NA	NA	SINE	Alu	Ya5	tcctgttacttagtagagtgccaggcacaaaagaggcactcaataatctttggtaaatgaatgagagactgaagaaaagtgaagtgaggcatgggggaaa<br>agaaaagatgctagccaagcacaggaaagagtgtgctaaaaggcattgagatatgagaaaatgttatatatatattgagaaatggaaataattcaatgtg<br>attggggcctagacaagacacaagacacaagaagttaaggaagactgagctggaggcataggtcatcggcaataccttaaacaccttctaaacttaaaaa<br>cttaaaaacattagtatttgatcctaaagttaatgggaattgataccgatcattaaacaaagagcaacatgatcagctttatatattttt<font color="green"><u>AAAAATAGCC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAATAGCC</u></font>tgggcaacacctaagtacaggaacaagactgagtgaaaccactgacagcactattgaaataaacaaagtgagaaatggtga<br>gggcttcttattatttgaagtagcagtgtagtggactagaggggaaaaagtcgagtgcagagtattcagaaatgttaacacttcatttcaaatatatagt<br>cacagtctatatctacttattttctttattaagatgaaatacaattctcagcacattacaaaatcagaaaatacagccacagtacagatgggtgtgagag<br>aagagccatcaaaagaagaaagcaaagaccttcaaattattaggagacaatttagtttacaatttaaatttaaaagtattctatacaaccatattattta<br>aggctaata	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:KIAA1680:NM:207491:4/8	
0	chr4	93612102	93612407	1000598	0	-	12299; RIP_Alu_chr4_093_01	NA	NA	SINE	Alu	Ya5	tatgcacctacaataatgtctaaaattaaaatgtgtaaccacaccagtattgatgaagatgtggagcaactgaaactcttatacattaccagtgggaaag<br>taaaatgttacaactcatttaaaacaatttgaaactttcttaaaaagttaaacttataccaaccaaatgaactcatcattccattcctaggtatttaccc<br>aaaatttcaaaacatatgttcctatacagacttaagtgtaaatgttcatagcagctctatttgtaacagccaaagctgaaaacaacacaactgtccatca<br>acgtgtgagtggataaacaaatcatagtatagccatccaatgaaatagtataaatttataacaagcaatgaactattgacattcat<font color="green"><u>AGAAATATGGATAA<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGAAATATGGATAA</u></font>atccccaaataagtatgctccgttaaagaaacaaggccagaaatgcaatgtagattgtatgattctgtttatataagcct<br>gtataaaatgcaaactaatacagtgaccagaaaaaaaccacgttttcctgggtatggaattgcagtcaggaagtgtgggtgagaagaattacagagaagc<br>aagggagtttggggggaatgatgactactttgtgtttacaatttttaagtatgtcagtatttatcaaagtgtacaatttaaatttgtttaagttagtata<br>tgctggtcatacaataaatattttaaaatgcatgtgtaaattatttttattatttcagttggttgtttatgtttattattaaaatgttaacagttagagt<br>taaaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:GRID2:NM:001510:1/16	
0	chr4	98116234	98116554	1000599	0	-	12119; RIP_Alu_chr4_098_02	NA	NA	SINE	Alu	Ya5	gagaaaaataaaaacggacaaaacatctttttagtttaatagcagtattgtgtatatgagagatgaaaatagagagggtagaggcaaatgagagagaaag<br>gacctatttggtcttaaattttacatatattttataagtaatcataatctttctgtttttactctagaaacagaaacagaataggattaatcttttattt<br>ttgtaaatgaaatattttcttaatcttttattataagaagtcattgtataatgtttacaagacttcgactgtttctaagaaatgttctacgaatatgtat<br>tttaacttggtcctacctgtgtgtcaaattatagctaaaagggaggaggaagggttagaaaagaaaaagataacttgtgaagact<font color="green"><u>AGAAATGAGAGACTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATGAGAGACTT</u></font>gcgtgtactttggattcgtattaatagtctaaaagttaaattatttacacatatttcgaactct<br>ttaaccatgttctattatttgaactcaattatcatcgggtttaagttgggttcttattaataaaataggtcccttcagaaggcacattagtgctttaagt<br>caagagtatattaatagttttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcccggctaaaatggtgaaaccccgtctctacta<br>aaaatacaaaaaattagccgggtgtagtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccaggaggcggagct<br>tgcagtgagccgagatcccgc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	98329680	98329993	1000600	0	+	pAlu4-98503335; 54298; RIP_Alu_chr4_098_03	GTCTTTGCTCAGGGCAGTTTTGG	GTCTACGAGGTATCTCCACTTAG	SINE	Alu	Ya5	gctcacagtgtaatttgatcctgatccgtaacatcaaaggtgcttccatctaaaccctgaactctgccttctgatgaagatttctgcaattactatagaa<br>gagggtgtgcgtgagtgcgcacgtatgtgcatgcatgtgtgtgcacttctatttaaaaattattctaatgtaattttaatgattacatagattgcctatg<br>aaataacaagtgaggatttttttactaaattttataggatacataaccaaagtgagtgttctacttcaaagagttcccttgggggaacacaatttattcc<br>atttcactgtctttgctcagggcagttttggaatgaaattcctctgaagaatttgccttttaaaaagaaaaagaatttgcccttagaa<font color="green"><u>TTTGCTGTAGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAGAG</font><font color="green"><u>TTTGCTGTAGAG</u></font>gaaaattgtcaacctcattactttgtagtcataagacatgctctcttatcctgaacctttattttctcttcttt<br>tcccttcctctatcctaattttttgatgttaagttctacaatttcctctttacactcaattgttttttgcaaaacttattagaaatctaagtggagatac<br>ctcgtagacaggtagataatgagagatgccatgggttttaaatgtaaaactgggagtcagaagcatgccaggtatttctgagtcatgagactgccttaga<br>tcatcaagaagtcaatgtatagacagaaaaagacatgagactgtggtcaaaaacttgggaactttaagatttagaagacatctgcgagaagagaaacaag<br>ccaagaagactgag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr4	98352414	98352712	1000601	0	-	12977; RIP_Alu_chr4_098_04	NA	NA	SINE	Alu	Ya5	ctgcagcaaactgattgtgcactgcaaactgcaaactgattgtgccactgcaccccagcctgggtgacagagcaagaccctgtctcaataaataaacaac<br>aaacaaacagacaaacaacattgatacaatatgatacaatatcgagcatttggtgccaaacagcaggcataattctgaataacagaaactgtttagtccc<br>aatactactgctgacagtacctctagtgtccttattcaaataaataatcttttattagatgataatagcaaatcctaatacagtaagtcttcacttagca<br>ttgtccataggttcttggaaactgtgactttaagtgaaacagcagaaaaggaaaccagttttaccacaggctaattggcataaac<font color="green"><u>AAGAATTAAGTTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAATTAAGTTCCT</u></font>atggcatatttatggttacaaaaacatcaccaaactaaataaagaccaaaacactactaacactgaacatagaaataattgtaacc<br>tgtatgtacatttaagaaagattaataaaaacaagtaagatgattatttaagttcaaggtagtagatggacagtgcctatcccagcatctcaggacacca<br>ggtggaaactgacccttgacaggatgccatcctcttgcagggtgcacacacacacacatacacacacacccatactcactcacttggactgggaccatgt<br>agacatgtccattcacccaacccagagaaaacctatgcagacatggggagaatgtgcagactccacagggtcaatggccctggctgggaattgatttct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	100242074	100242400	1000602	0	+	238927; RIP_Alu_chr4_100_02	NA	NA	SINE	Alu	Yb8	tcacaatggcaattaaatttccccatagttttggagggaacattcaaatagtaacatctagctagaacagcctgtctgttggcagaatgaagtagaacag<br>tttagtgggaacaaggatacaagtgtatttttcatggaccaaatacagactctggaaaggatacggttgtggatcatcgggaaaagaacttcacgaaaga<br>gatagatgcacagatggatagtgaaggtcaccctggtgaaagccaaggactgaatgcaggtcttaaatggccagttgtggaaagaatcatccttataaaa<br>gaattgagataggagatctctaatagaggaggagttctctaatagaggaggagttctttgtgaaacccacagaaatcccccaactcaaaaaa<font color="green"><u>AAAAAACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AAAAAACC</u></font>aaaaaacgtagtatctaaaaggtagggcaccaatatcaaattgcaactgtactggccatatgcaa<br>tgtagagcaccaatatcagatcgcaactgtactggccatatgcaatgtagtctttttctccaggtttcccctctcttctaggctggacaatggaggaggc<br>ttgaaacagtagctggcaagtggtagaagagatggagcagagaagcaagaagaagcagactcctcactccttcaccagggtggatttgctggtttgaagc<br>agacctgagttgggagaggagagaggcgagaagttttaattggatgaaatatttctttagactggtctatacttttttctttatatctaaaattcactgg<br>aagagctatgaaatctgtccaagattt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	103352381	103352382	1000603	0	+	1387; RIP_Alu_chr4_103_01	NA	NA	SINE	Alu	Yb8	tcttaaactcctcacatcgtgatttgcctgcctcagcctcccaaagtactgggattacaggcttgagccatcgcgccaggccaagacgtgtcattttcaa<br>taaatcattgaagttgtacggacttactggtaaaatgaggttctgtcttgtccccatttgccctgctgggtgcgtctatcgaagttactttgatctactt<br>tatgcttcctccttccttggtgcttttcagagtgcaacacaaaacacactgggttatcacagttcagctctaattctgtgagaatgccaataatgaggat<br>gatcgattgatgggtaatagaacaaagccttgcatttgaaatgtaggagacaccttacaatagtaaaaacttaagaggactca<font color="green"><u>AAAGGTCCTACAAGATG<br></u></font><font color="red">CGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACC<br>CCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCG<br>GGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAAATA<br>AAATAAAAT</font><font color="green"><u>AAAGGTCCTACAAGATG</u></font>tagaaaacataccatattatcatcagttttaattacaaaataataaatattagcgttattataaattgttcaaa<br>tttacaaccattctgttaacatgtgataacttgagcctgacacatagctgtagttttgcagcaacatagatgtggctggaggccattatcctaagtgaat<br>tactcagaaacagaaaaccaaatagtttataagtaaaagttttataaaatataaactattttatagatagtatacttcattgcaattacaacaaagagta<br>tgttttctttaaatggagggaatatcattgcagttctcctttcaaaacaaaggcttcagagaaatgattaaccaaaagatctatataatagaaatcaatt<br>gtttcttaa	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	110718207	110718514	1000604	0	-	237808; RIP_Alu_chr4_110_01	NA	NA	SINE	Alu	Ye5	tgagttatcaaattttcatacatcaaccagccattcagatttcaagaactatattcccatatattggtttatgagcacttaggaggataactttaaaatt<br>taagatactggattttttgtgtgtggggggaagagagagagattggttttaagcaacaaaagagatagctatgtactaaactctaattttgctacagata<br>cgatactgagccaaactcttttgaagttccttgcccaatattcttggattatttgaagtcatatttgacatctgactatgcaaagaatcaaactctcttt<br>taattaattgaagttttccacataaaactgatgtggctaggtcacttttgtggtcccttttaatatttaatctcataggtctt<font color="green"><u>AAAGAATTCAAGTACCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGACCAACATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCGGGGGGCGGAGCCTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGTCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAGAATTCAAGTACCC</u></font>attttaggctatgaaacgatcaagttttagcaatattcaaagctctacttcaattaagtcaggtgacaggctggg<br>tctgagccttagttgctttatcagttgatcaataaatacagggtaatatcagtacctatttcccaggactcccagaagtgagggggactgagtgagacaa<br>agctcatgatagtgtatggcacatgctaagcattagctatcgttttacatgtattattaatgaaacaaaaggagtgctgacttcaaaagctgctggtatt<br>aaaaactgcacaggatttacttggaaaaaattagctctgtcattaaaaatgattgaataaagcacctgaagttttaacctggactgaggatttttccatt<br>tcagtttt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CCDC109B:NM:017918:1/8	
0	chr4	112028219	112028508	1000605	0	+	6172; RIP_Alu_chr4_112_01	NA	NA	SINE	Alu	Yb8	cattctctgcttttttatgttttagagtctgtgtttggtgctaggttaaatattattcttttcttgcatttctccatgaatatctacttgagttttgaat<br>ttgaacatatccagttttttaaaaaaattaaaagaggaatattttggaggagaaggcaactgcttttcatctcagtaaattcagaaaacaacactaacgt<br>gttttgtaaatactgacttaaaaataggaatgaaggaataaatttgagagatttctaaagactctattaaaacatttgttaacacaagccttgtttactt<br>cacacaattaatgtataatttaatatctatttttaaaaggtaaaattattactctcatctgatataagatgaccatacatc<font color="green"><u>AAAAATTTTACTTAACTAA<br></u></font><font color="red">CGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTA<br>AAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAAGCGGAGCT<br>TGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTTTA<br>CTTAACTAA</u></font>aacaatttatttaactgattaatttatgagaaagccagtgggatatatagcaagattaaaagagaaatcaaagtaccacactcttattgtc<br>agattaggaatgctgcaataaattcgcaaatgaatgccaaactggcaaaactggtcaatatctatagaacaataatcaactgcatttcacagaaacaatt<br>tacatttctataggcaggaattatttgtattactatcaaatttctacaagtgttctacaagttaatgtccatcactacagttataaaatagcctgctcaa<br>agactaaaattgtgtaaaattttgcacatccctaaaattgggcatataaaggtacacaactcaaaagtatcagactgtatcattctatta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	120233248	120233249	1000606	0	+	30866; RIP_Alu_chr4_120_02	NA	NA	SINE	Alu	Yb8	gcaatttatgggttaacttgtctttgaagttcttttttactcatcacccttcctctgccccaaatagaactgactttttttccctttatgtccctactgc<br>ttccaatacaggctatttttcatagcccttttagtatagtaagcccacaagtctagcacaatgcttgcttatctgattctttgatagacacaaacataat<br>tcatggaccgtgaattatggaccatgagtgcctgtggctaaatgttggaaaagtggaaagggtcatctctgccctcatagcttacttatagtcacaaaat<br>aaaaacttgcagtccaaaagtcaaaagcactcccaagcccactctgtgtcacagatgtcacagatgatatggatttac<font color="green"><u>AAAAAAAAAACTACGTCAAACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAAAAAAACTACGTCAAACT</u></font>ttgtttttttttttttgagacggagtctcgctctgtcgcccaggctggactgcggactgcagtggcgcaatctcgg<br>ctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccgcgcccggctaatttt<br>ttgtatttttagtagagacggggtttcaccttgttagccaggatggtctcgatctcctgacctcatgatccacccgcctcggcctcccaaagtgctggga<br>ttacaggcgtgagccaccgcgcccggccagtttgacgtagtttaagggatctgatttatagacctcctaaagtcctgtgcttatttaatattttcaaata<br>ca	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	122028393	122028696	1000607	0	-	237878; RIP_Alu_chr4_122_01	NA	NA	SINE	Alu	Ya4	gtttatcataaaatggaatattataaagattttatgataatatttctattatgcttagcaacatgggtgaatctcagtaacaaagccttgagtgaaataa<br>gctagagaaaatggaatacatctgtttgattccctttagctaaagtttgaaagcaggtgaagctaatctataaaattataaatcaggattgtggttacct<br>cactgtgagggtagtgattagaagtagatatctggggagactgtttcttgatctgtgtgatagctatatggctgtgtttactttgtgagaattcattgag<br>atgtatgcaccaagtttctgcgcctttcagtaattgtgtgacacttcaataaaaagtttagttaaaataataagacagaacaacaat<font color="green"><u>AGGATAAAATGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AGGATAAAATGTC</u></font>taggctgtgggtttctgctttagctgggctgtcaagttgtggtaggacctaaataataagtgtagcggccatctgaagaagaa<br>ctaggtgaagaaaccagattgtagcagagatgacaatgaagtcagattgttcaaaggacagaaacaaagcagctaggctaatggttagtggatgagagac<br>cagtagtggtgtgtaggattagagaggcaattctagattagataatgaggtttattctggtggtagaaggaagtcatttaagggatttgagcaggagact<br>gatgagatttgatttatgtcttgagaaggtctttgtgtctgcctcgtggagaacaggtagagaggcaagagtggagcagggagaccacctagatgtctgt<br>tgct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PRDM5:NM:018699:2/16	
0	chr4	125891202	125891507	1000608	0	+	238661; RIP_Alu_chr4_126_01	NA	NA	SINE	Alu	Yb8	ttaattctcttacactctagacttgtacatccacgagtgagcacccagttcataccaaggtgtccaagaagctctagtcagaaagcaagaggcatgtgtt<br>gtagtcttggggttgctgtttgaagctcgtggaagtttgtgtggaactggttgctgcagaagggcccgtaataaaagttgaggctataaagatttgatgt<br>ggcctacaaggttcctaatttgcaagggcctagccacatgaactgaaattactcaataattctaggcttctgcttccataccaccacccatcacacatcc<br>atatatttagctgggctgcttagacacatagtcatgcaaaacaattaggggcacaattagcacaaaagaagcttttgagtgaattat<font color="green"><u>AAAAGTTGGTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAGTTGGTCCT</u></font>gcccagtggatgaattatagaaaggtgtctttttacatggaaccaacccaaatgcccatcaatgattgattgaataaagaa<br>aatgtgatacatatacaccatggaatactaggcagccataaaaagaatgagattatgtccttcgcagggacatggattaagctggaagccatcatcctca<br>gcaaactaacacaggaaatcacatgttctcactcataagtgggaattgaacaatgagaacacctggacacagggaggggagcaacacacactgggtccag<br>tcggggggtgaggggcaaggggagggagagcattaagacaaatagctaatgcatgtggggcttaaatcctagatgatgggttgataggtgcagcaaacca<br>ccatgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	129426700	129426701	1000609	0	+	9011; RIP_Alu_chr4_129_01	NA	NA	SINE	Alu	Yb8	ggaaaagcttgaactaggtataaaatgctgtctaaatccttgatttaaaaaaaatttacttcgcttggcctgtttaaatactgtactttggccctgttct<br>cttgtcccacgtgtgcttaagtaaacaaaaatgtattaaccatttcagttgatataagtaggcagacaccttgtgttcacatttatgtaaccagaagcaa<br>aaactctgtaagctatgtatttacttggttggattaaatgtgtatatatacacagaagtacaaacaactaagaaataaattacataattcaacaccaaaa<br>atctcctatttcttatccctattccaatgaacaaactacaaaccaaagcacttctaaaatatcttccagctatcaagcactgaaatca<font color="green"><u>ATATATACTTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCANAAAAAAAAAA<br>AAAAAAAAATAT</font><font color="green"><u>ATATATACTTCT</u></font>taaatcttatacacctacagattaaattaaggagaaaaccagcttacttccagactgccaaccctatgactttaag<br>gcttggaggtactctctccaataacaggtcactttaggtctctaatttaattatttattcttattgtagtcaccacttttttttaaagcttagtattaat<br>cagtgcacaaccaggatgcacaatgttgctcaactgtatgatataccaacaggttccatgagtctggggtttattaacataatccaaaatgtatgctaca<br>accacactgtaaaaaaagggcgtctaaatcaactaccctacacaaagttccctgaaaacaaagttctctcaaaacaaagttctaaaaatctttaacttgc<br>ataactggcaca	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PGRMC2:NM:006320:1/3	
0	chr4	134515011	134515313	1000610	0	-	20624; RIP_Alu_chr4_134_01	NA	NA	SINE	Alu	Yc1	catggatgggattttctcacaactgcatcagagactgaagctcttcctctctaatgtttcttctttatccctgtcttttcagaggtgtcaaacttgcatc<br>acatgtttaaaaaccctccctattactactcccactctcctttgactttaactgatttttattcccccaaatctctttcgcttccaacttagattgagta<br>tctgcttcccagtaaaacatggattcccactgtatatataacaaatgtcaatggtattcaaaatatagtcttttctgtttataaattattaaagaaaaat<br>ataaagaacatgcgtgaagtgaaaaagaaatgtattagatttctattgctgctataacaaattacaaaaaaacttaattgctt<font color="green"><u>AAAAAATACAAATTTAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAAATACAAATTTAT</u></font>tctcttaaaattctaaaaatcaaaagtccaaaataagttttatgaggctaaaattgaggtgttggcaggcctgtttcctt<br>ttggaggctccagggaagaatccatttccttttcctgttcagcttctagtgggcacctgcattctttggttatagaccctgcttccatcttcaaagtaca<br>tcactccaatttctgcttctgccatcacattgcctttttctcttaactcaattttgaaggccatttgtgattacttttagagccaatttagataatcaag<br>cataatatactcatctaaagatcctttacttaatcacaactgcaaagttccttatgccatataaggtgtatgggattagaatgtaaacatgttggggaaa<br>agg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	150380507	150380831	1000611	0	+	13443; pAlu4-150627143; RIP_Alu_chr4_150_01	NA	NA	SINE	Alu	Yb8	tttcattgataacatatcaatgcatctaatacattggcaaacttttatttagtaaaaaatctttaaagagcaaaaagcaaattttgtgaagaatattgcc<br>atgattataaacagatgaagaaacacagatgttaaaataacagtgttgatgcagatgtttcagagaaacaatatgtagtcaataattcctaaccaaaggc<br>ctgtaatggataacaggcctaatatattcacgtagggggacactaaactcaggttagacaaaaaccgctttccaggaaagggttatctaagattggatga<br>ctgacttcataaagccttctgctttgctttattaagtgtcttcatatcttttgcttgtaatttccctataatcggctatggtt<font color="green"><u>AAAACTGGGCTGCTCTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTACCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTGGGCTGCTCTA</u></font>actcaaaatatcaaggccttgctgattttcttgtcttaattgtttcctgtgacacagc<br>catcaagtaaagtcaaagcatcatagtattgttgccttctagaccaatactatccaacagtaatataaagcagtcctaaagagcaagccacatatgtaat<br>ctaaaatttcctaatatattttgaaaaaggaaaaggaacagaagaaattaattttaataatgtattttcatttaactcaatgtccaaaatattacaattt<br>taatatataattttttatagagatggggtctagctctgtcacccaggctgaagtgcagtgacatggtaatgagtcactgcaatctcaaacttttaagctc<br>aagcaatcctcctgcctaagcctcc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	151170491	151170799	1000612	0	+	pAlu4-151417127; 9448; RIP_Alu_chr4_151_01	NA	NA	SINE	Alu	Y	tcttgaattgtagctctcataattcccacatattgcaggagggacccagtgggaagtaattgaatcatggaggctttttccccaatactgttttcgtggt<br>tgtgaataagtctcatgagatctgatggttttataaggggtttacccttttgcttggctctcatttctctcttgtctgccaccacgtaagatgtgccttt<br>caccttccgccaagattgtgaggcctccacagacatgtggaaatgtgagttcattaaacctctttttctttgtaaattacccagtcttgggtaggtcttt<br>atcagcagtgtgaaaacagactaatacagctttaaaataaacaaagtgtttctatagcctggggaaagaggaaatggtctacgtttt<font color="green"><u>TAAAGTATTTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATGCAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAACAAA</font><font color="green"><u>TAAAGTATTTTTA</u></font>aatgttggtttgttatttcttttgtttatgcccagtactcagaatggcttttttattttattttattttattttattt<br>tatttttttagcgatggggtctctctatgttgcccagaatagagtacagtggctattcacaggtaggatcagagcatactacagcctgaaactcctgggc<br>tcaagcagtcctgctgtctcagcctcccagtagctaagactacgggagccaggtcactgtgcctggctcagaatgacataattttagaaggaagtgaact<br>taacatttattttcttattttctccatttttccccagctctgtaacacttactttcatcacaattagaatgatttgctctgccttttctgtaggcagaaa<br>tttaaatct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	160847926	160847927	1000613	0	+	238918; RIP_Alu_chr4_160_01	NA	NA	SINE	Alu	Yc1	aactgatcatgtgcagtgcagcaacccagtttaaattggcctacttcacactgatagtgtcactatgggaactatcctcacagacccactagagacctgg<br>ggtcactatgggaactatcctcacagacccactagagatctgggggcttttcttctagtgactaatatccctcatctgatattttgctagatggaattct<br>aaatagggaacttctttacatcaggctaagcaggtccaatgtctaaggcagaaactagaacacataatatgtcccaaatatttacggaacaaacactgat<br>ctatcaaagtgctttcagaatttcaaaatacatggattttagaaaataatttttttattgttaaagatttatgttcctgtccacttaag<font color="green"><u>AAAAAATTAGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCACAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAAATTAGT</u></font>agaggtaagtatgcattgccaagttaatctttggtaatgttagggagataggttttaagcatttgaacacacaaaattt<br>gtttctatgtttttttcattttgttccacaaggagttaatgatggtaggctgggaggcttgtgtcttccttttagtggcgcacagattacgtagaaatgt<br>gctattcaaagtataacctgtggacccacatttgcatctccacaaatggcttgttacagtctgcagaaatataagtagagagacttataagaaccagtga<br>atagaaacattttatagcaatttgatattgtcaaaacaccctactattcttgtagacccatttttatgaacgtgatatagaccaacaatatcaatcaata<br>taaaaatgaa	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	163451865	163452164	1000614	0	+	53704; RIP_Alu_chr4_163_01	NA	NA	SINE	Alu	Ya5	ataattgctattatacagtttagaaaacttttaaagagaaaatattgaagctagagttgagtagataaagtttttcaaagttctgagcaaatttggcaaa<br>ttggaattttgaattggccaaagtatcattcagctacaagaaatgggctgaaagcatgcttggacaaatagtatttttgttcaaataacttctaaagaat<br>gttctagaagaagaaaactgaacacagataatatgtgagataataataatgactaaattactcaaaaaaattggaattcaatactggaaaaccctaacat<br>ttgaatggcaatgagtgatatcatttaaatgattctaaggtatatatgttactcagatggaagaaaaaaattgtgattaacttttaagtat<font color="green"><u>AGAAATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATGGAGACCATCCCGGCTAAAACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AGAAATCTT</u></font>atatatattttaagttgtaaaatctaacagaaagataatgagtatcttccagaaaggtaaatcaggtaaacagaaagcacaaaagaaatct<br>aagtataacaagagacaaactatattagaaatggtctaaatgtctgtcttaatgatcaaaattattacaattgaataaattaaaaaagagagagaaatag<br>caacgcattttactaggtgcactcaatcaatataaagaagactggccagggacggtggctcatgcctgtaatcctagcactttgggaggccgaggtgggt<br>ggatcaagagttcagaagattgagaccatcctggccaacatggtgaaaacccgtctctaccagaaatacaaaaattagctgagtgtggtggcaggcgcct<br>	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	167327554	167327879	1000615	0	-	pAlu4-167574198; 8359; RIP_Alu_chr4_167_02	NA	NA	SINE	Alu	Yb8	attttcaccaagacagagacaagatcccaggttaaagaaaaataaaagcagaaagagggtagcataggggaagaggcaaaatgtagctctagtttatgtt<br>tctactgtgtagctcagagcaatgaggcatagccatactgttgactcctgtactacacatacgcctaaccacacccataaacacactgctaaccagtaga<br>aaagactgtattattttcacttggtctacaaaaaatgaaagaggcatttctatggagaattttcctttatgaatgttggatatgtataccagaataaaga<br>caaaaaaaagattgatttctttagatcaatacaatataatctttatatttttaagtgtacaacaagtgaaaaagaataggatgt<font color="green"><u>AGAAAAGGTTGGAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAGGTTGGAAGA</u></font>taaacatttgggggcaagaatctagaatatggtaaataagagtaagagaaaaaaattg<br>gaaaatttcagaacaaaataaaaatgaaaaataacaggaaaatgtatacttcttggtcttttacacagaaaatgaatgtaatgttacttttaagactgaa<br>tatttaacttctaaagaattaatgcaaatttggataaatggggatatttacctccatgcttaatgctgcttttatttttatatcattccttaaacttgaa<br>attcttttattctacaatttcatttatacactcctttcctggtttgtcttcattttgaaatacacctcagttgtattttgggggttcatcctttatcatc<br>ctcctttaaatattggagttctctaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	167631494	167631589	1000616	0	-	52971; RIP_Alu_chr4_167_03	NA	NA	SINE	Alu	Ya1	agaatagagagaagtagatgaagacacaataatctcttttctaggcatcctaaatggattgtctttgcttctagtttagacttatgagtaggctgctgct<br>taataccctgcaggagtttcaggaaacccaacatgcctcaaattacactttcttcatttacttgctgacccttgaaataattttaacaccggtcattgat<br>tttagttctataattaaaatgtaaaaaattaaatgataatagcctagccatagaagaaaaagcacagtgatagtaaagactcttaagtgccttacatctt<br>tcttgaaaattaatcctatctgagtagaaagaaaaagataatgtactaagattatatgagggaaatacaggtacatagaaacatag<font color="green"><u>AAAGATAAGGTTCA<br></u></font><font color="red">CCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAG<br>ATAAGGTTCA</u></font>gggtagagaagacaaaaatcatgtatttcatatcaagtagatttatttaacattagtaaatatatacagaaagatatataatataatatg<br>aattcctgggttgccttagaatagaataaatatatacagaaagatatataacataatataaattcctcggttgccttagactaaattcctggttgcctta<br>gaaaattggaatcctttcttgtgccttaaaaagaaaaaaaaaagcctgaaatcaacacagaagagccaataaaaacacatataacttactcctttagcat<br>aattggaaaacagagtaccatgaacacaaatttgtttgtaaatagagaaataaacatcaagctgatatcacatgactgttcagagagggaaatgga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	171071174	171071175	1000617	0	+	4651; pAlu4-171419045;1104685737045; RIP_Alu_chr4_171_01	NA;NA	NA;NA	SINE	Alu	Ya5	tgtttttgcaaagctctggaggtaagtattgctttacattttaaaagggttgcttaaaaattttttttaaaaaaaagctaagaagattgggcagcagaga<br>cttcgtgtggtctgcaaaactatttactatccagtcctttacagaaaaatgtgctaatccctgggctaaaacaatggtctccaaagtgtggtatgtacat<br>tccaaagattgtgcaagataattcagtaggttcttaattatttattcttttgcattcatttattgcttatgttttataatgcacataatttttagtatag<br>taatagatacatataatttataaattaacatatacatacatgttttgggaataatgctcagaaattttttaataatgcactttatgataa<font color="green"><u>AAAAATTTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA</font><font color="green"><u>AAAAATTTTG</u></font>g<br>ttaaaatacaaaatttatgagggcaagcgccatattctctccttccatattcccaccatctaatacacactcaatgtaatgctttttgaataaatgatag<br>cagtagacttaaacatttattgagcacatattaactaagctctcggaatgtaatatcttctttaatgattagagccaccctatgagttagatcttgttac<br>ttttattttacaaacgaggaaactgaggcccagagaagtcaaacaacttcctgaagctctcacattactagtaaaaactggaagctgagtctgatgccag<br>tctgactccaaagccagtgtttttaaccatgaatgacctgtctctaatttcattctttttttttactctttatgtgtatcagaatgcaa	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	172125446	172125749	1000618	0	+	7126; RIP_Alu_chr4_172_01	NA	NA	SINE	Alu	Yg6	tacaacctaaattaatgtaaaatttcatttttccttgaagtgattacacaatggtatgttggcaaatcctaaataatcagatctctagggttttactttt<br>gcttaaaagctctgttctatagcatttcctgattttcatgttgtaaatattcccacaagggctgatttagagctatcaatgtaacatcactaaatatgca<br>atgggaaagccagtgggaaccagctttaccacaccactataacataaggtttatctttcatccttctggtaattatcatcttgaagcaactttacttgtc<br>agttattaatatttggttctggggaaaggtaagtagagcgtcacacaataagaatcattaatactaacccagaatatctcatctc<font color="green"><u>AAAAACTGACGTGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAAACCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTACAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAACTGACGTGCA</u></font>gagtatatctgcaaaatattttaatgagatgatgtgaatatttctaataattttataattagaattgtttgtttttgaaac<br>taatgcaaatacataatccaatgcagagtttagggccagatattgtgtattaaattattccaataattttttataaaatataagaacaaattatattcat<br>cacaaccacagtcaaatactattggaaatgtgattttcctgaatctagtattcctgctttaaaaatctctttggtccagtgataatctctgttacgcact<br>gtaactaatacttaaaacatactttcacaatgatttcaaatccctaaaatagaaacaatagatgtatttgccaataaagtaaactgtttccagtttgtca<br>atat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	178393832	178394150	1000619	0	-	pAlu4-178741188; 238465; RIP_Alu_chr4_178_01	NA	NA	SINE	Alu	Yb8	ctttacctgttgcagaaggcaggattatagagttaagagaactaggactgagtatcctagctgatgaagcactgcatgttatatcttttcttttcttgga<br>aattcactatactcattaacatttcaagactctaataagtcctgcagtgaaaaaaaaatcaatactttctatcaagattttccaggcatatttgacacag<br>aatacatttttgcgtaccatctattaatatttaggaaataatttaatagaatataacatctttggataatatattctgccactatagaaagttatatttt<br>taaaaatttgttttaaatattatgagaatatcttgaatctttacaattctagtgaatatagtcattaaacatagatattgtataacattt<font color="green"><u>AAGAATACTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATACTT</u></font>atgtggtcttgtccttaagagatctacaccagaattaagattagacttagatatctcaaattcaatcgacc<br>atttaagttgaacttcagttctttgatttacttctctagattaaatcctttaaaggctgtttcttcctcgatattatttgggaatataaacccaatctta<br>taagaccagaaaaaaatatcaagtagttatttctcctttaatcacaaaacccttgcaggagataaaagattagcctcagactttctgacctataatgtta<br>acatattttaaaagaccatcatttcaaatgctctagtttcttttttgagcaaactgtgaaaaaacaaaaaactcttctagtatctgtcttctgtggtctt<br>cactacatatctcctgaat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	181554284	181554448	1000620	0	-	pAlu4-181901637; 16436; RIP_Alu_chr4_181_02	NA	NA	SINE	Alu	Yc	ggtttcaccatgttgttcaggctggtctcgaactcttgacctcaggtgatccaccagcctcagcctcccaaagtgctaggattacaggtgtgagccactg<br>cgcccggcccaagaattaaatattgtcaagaagaacgttgtagaatcagcaattagatgtggaaatatcgcattcttaaaataatattcattaatatgaa<br>ttatttagaatgagtaagagactatatcaattctatgagaagattctaaatttctggcataatacaaagttcttgattttactgactttttttgaatatc<br>acaactaacattacaactgttaactaatatcattttagaatgtaagacctatgaaaataatttgataaaagatgaacattgt<font color="green"><u>AAAAAAAGGACAGCCTGT<br></u></font><font color="red">GGTAGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACT<br>GCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAGGACAGCCTGT</u></font>tctgtagaataaactaa<br>atctccagggtataagcttttggatagtttggctcatataagcataaatgaatttttgtgaaatttacatggaatatggttttaatttacatttatgtta<br>agctgatttgaataaaaaatttaaaaacacaagttcaaaaacaaaataatgtgcattaaagattgaaaaaatcaactttaaatcatttgtttatttgatg<br>tgttcagtagaacttgactctggtgctagacaacatcactttctgctataatcatgctttcttaaactatcatttattgaatattgattttttgtgaatt<br>gtgattacatatacatgtatataatcatacatgtgatatatctataattatatataattacaata	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	184991848	184992145	1000621	0	+	2532; RIP_Alu_chr4_185_01	NA	NA	SINE	Alu	Ya5	cgcttaggtctggcatcatcaaagaatgtctaactctgcttggtaatgatgaaactggtgggggtttttgaattactcttaaaaagttatttccccaggt<br>aagttcatagcctggatatttccccacataaaagatcaaacattccttaatctcttctctatatcccaccctttaagaccttcaggttagagaggagaca<br>ttctgaaaaaatccaaatgcaaacagtggtatgtcagaagaaatggtttcaagtggtcgcaacagagaaatagcgttggcaaggcgggatcggggctgat<br>gaaaatgatacaggcttttatatttctgcaggagttttttttttttttcattccaagcataccagagtttcaccaaagcaggtag<font color="green"><u>AAAGAATGTGAGAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AGAATGTGAGAAG</u></font>gtgttgtcacaaaatccaggcatgagtgtatttctcctccttagagccagcctcttctggcaagccattggatctcttcaagcctca<br>gcttctccatctatagaatggctacagcagtgttacttgcttcccaggagaggagcattccatcagcagtaaagcattcattgatcttccttttgtttct<br>ctgtcacagcctggcatggtcccaaaatattgtagtaatcaatgtgttttgaattaatgggtttctaaatattcccatgcttcacacagaccgttttgga<br>tctctgaagttttgcaccgtgcagcctgttaggcagttgatcaacctgtgactaccttgtttgtggcttattttccccagccagagcagcccggatct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	190030249	190030552	1000622	0	+	8061; RIP_Alu_chr4_190_01	NA	NA	SINE	Alu	Ya4	ataaaatattaaatattctttccaaaattcaaatgtttgtatttgtaacatttattcctgatgctgtatataaagtataatgctaattaaactacagtcc<br>ccattctcgagtgggcatttttgttttgggttatgactggaatagtctctatttcttatgaactacgtggatttatccagtgaaacttccttcagaaatt<br>atataaggctgttaggatgcaggactcactgtagcaccagtatcatttcttccctaaacatgaattatcatttaaatttacttcttaaacaacgcttttc<br>atgagtgaaaaatggcatatgtcatatggataaagaatcaccgaatgacatcagtgtatccaaaaccattgcggaaagataactt<font color="green"><u>GAAAGTACTGGATTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGCAGTGACAGGCGCCTGTGGTCCCAGCTACTCGGGTCTGAGGCAGGAGAATGGCGTGAA<br>CCCGGGAGGCGGAGCTCGCAGTGAGCCGAGATCGCGCCCCTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAAAAAAA<br>AAAA</font><font color="green"><u>GAAAGTACTGGATTA</u></font>agtctaacgccttaagaggaggcggatggtttacatagtccttgacactggaaacatgtctcaatgacactgtatgttttc<br>tctctttagttttcacttcattttgatccatcgcttcatgtgaattaaacaatgggagcaggtggtatggaagtcctgatttgaccacattcttctctat<br>gacatgtcttaaatttcatgagtttcctgtgtaaactctctttggcagaccctctggatacttcgtgatggcaaaaacacatcttactctggtaaaatat<br>taagggtgttcctcgaatctgaataataaaatggcattgagatgaagtacattaatgatgcttggcagaacaacagtcagggtgttttcaaggtattcct<br>cctt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	190206690	190207024	1000623	0	-	237921; pAlu4-190554038; RIP_Alu_chr4_190_02	NA	NA	SINE	Alu	Yb8	ggatctgtgggctttagttttctcaataatgaaatcggagggtaagtcttaaaagtgtgtaacttcacttttggtttttaaattatggccaaataatatt<br>atgagaaactttatatcatataatcattagatttgaaagaaaacagatattatcgagtaataagatctagtctctatattgatttgattcttgtttaatt<br>ttgcacagactatacctatggaggaaatgaaatggcttttgttgtaggcagatatttatattattttaaactgcagggatttgcagtaaatgagggatta<br>taaatatgtacgtgggaaaagactggatattaaaagaaaaaagaactactcaaagataaaatggatggcaaacattttttt<font color="green"><u>AAAAAAATCTAGCATGCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGG<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAATCTAGCATGCTC</u></font>aagaacatatgtgatagacaaatcagaaatcaggaaagtcaagaat<br>ggtgaagcttgtaaaagaaaagagaaggtcctgtttaagaaaaaaagagaagaatgagtagtttcaagagctagtatatcatccaaatgaagctgcgtga<br>ctccaccactggctaggagtgtgaccttgtgacaaatacttaaccttcctaaacctcagtagtttgttgatgatcatgatctctcatgaaaattctctgt<br>gggacttgcacaaacttgatctttaaaaacatagctccattgttatgaatttctcctaacactgaaaacagaaaggtaaagaaagaagagttctgaatag<br>gcaaaacagacaatacacctattttaggagataaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	190528426	190528731	1000624	0	-	4965; RIP_Alu_chr4_190_03	NA	NA	SINE	Alu	Ya4	ccttcacagaaggggagactgaggctaactgggggcgtgtccttcccacactctcccaaacccacagacctgaactcacacgggaatgtatatcttgggg<br>gtaaccaaaggcttttcaacaggtgcgagacttcgtataagagagatcactttcagatcctagcttcattttagtttctcctaaaattaatctccctgag<br>aacaagcctgacatgaaagaactggcctttcctttcctgcctccccgttcccagttggaaagcacgtcttcccaggtatgaatctttctgggagcctgac<br>ccaagttataaaaacctggagtagccctaaaggaaggacgagggatatcactgttgagagagttcatggctctgatgacgactgcat<font color="green"><u>GAAAATGACTCCG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACAGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>GAAAATGACTCCG</u></font>atgactgcgtgaaaatgctttcgtgggccaggtagggtccacttctttgctctggaggagaagctgctagataattaccta<br>tgattgttgttaatgtaaatgattatggaattttcagcatatacttcaaaaggatttaaaaccattgagtgacgttgctataaacaaactccttcaattt<br>ccatctacttgtttatgggaacaaggttttagaaattacatctataaaagtgaaaagtaggaataaaacggatgttgaatccgacctcattgtagcagta<br>acatctgtggaaatgtgacccactggaaaaaataagctccattcatctcatgaagagatgcatttccaataataactgacttcaggtttatcaatcactt<br>aaaatc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr5	9464774	9465074	1000625	0	+	20788; RIP_Alu_chr5_009_02	NA	NA	SINE	Alu	Ya5	atttagctcagccactgggctcaagtagacaaataggaagtgagttttccatgtgtactctgttccttatctgcacagtgggtgccctctgaactgagcc<br>tcatcagaggctatgtgtctcagcccacacgcaagcaacgtgcatgctgcctgaagtggaagcaaaagtgtgttgttagttgcgcacccatagaagcaca<br>cctgagcctccctatacagtgcccaactagaagaggctgagcacttccctcctgtcatttgtagactgatagtccagtcccatcattaccaggtctcacc<br>cactgccagaaggatggctcgtcctcagtcccatgaactcagctgtgctcatgagttaccaatgaggaagggatgaaaggagaaaat<font color="green"><u>AAAAATTAATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAATTAATCTT</u></font>gtatccacaaaacataaaaactcacattaagtatcccatcatgattataaaatatcaccactcatcacctataggaggataaacta<br>aggctagttaagggtaaatgatattgtgactgtcaggactagggcatttgtttagaatgacatagaaggtcttagctaaatccatgcaaagtgttccccg<br>aaatgaacgttcagtctcctccaggaaggtgattccccgtctcagtaaaacataggtagaaaaatcagtcttatcatgggttacagaataccctttcctt<br>tctacctcccccttctgcttgtcctaattaagtcctcgaaaattaattgtataaaaacaaaatgtagtctaccacttattagattatcctatacccaata<br>g	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SEMA5A:NM:003966:2/23	
0	chr5	25813079	25813387	1000626	0	-	5105; pAlu5-25776807; RIP_Alu_chr5_025_01	NA	NA	SINE	Alu	Yc1	tgcccggctaattttttgtacttttagtagaggcagggtttcatcgtgttaggcaggatggtctggatctcctgaactcgtgatccacctgccttggcct<br>cccaaagtgcctggattacaggcgtgagccaccgcgcctggcccctttgcctgtttttaatcaggttatttattttatttttttgccgttgagttgcaaa<br>gtttttaaatgtattttggatataacccttatcagatgcatggtttgcagatttttttttcacatttaatagtttgtgtcttcacaccggttattgtttc<br>ctttgctgaactgggcattttagtttgatgcaattctatttgttcattttttcttttgccacctgtgcctttgaagaatacgctt<font color="green"><u>AAAGTTCTGGGAAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAGTTCTGGGAAAA</u></font>acacaagaaaacaaaaacaaaatccttccaaccaagaatattaatttgtttttagtttaagtaaaaccataagatt<br>gacttcagccacagacaaaataattacttaaaagctttgattcaatttccaataatatagtttctctctacaatctgtgtaaaattaagctccatttaac<br>ttttaatgtaatcatactgtacttggccacaaattatgagtattcatgcagatatttgcaatgagataaaataattttggctatcgaaatttttgaatgg<br>actgctttgcattgtttttgtaagctcagactttcttattataattttatagaattaatgcataggttttggaatctttgaatcactgatcacacctata<br>gttttcttg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	33391333	33391651	1000627	0	-	Yb8NBC419; 16571; RIP_Alu_chr5_033_01	CATCTCCTGGCAACACTGAG	ACAAAGCAAGGGTATTTACAGC	SINE	Alu	Yb8	gtaagagatgccacatactataattctgatgacatcaaaaggttcagtggatgtattcttgaatattctctggacatatgtaaacattttgaatatatca<br>caactttcatttttcctaataatggaaaattaaccatgcaattaaatatatgacagtcatggatgacttcataaagggattttaaactgaattatagcta<br>ataaaaaatacaaagcaagggtatttacagctactatgaaaaaattacaaagaaaacaataaaatcatctttagggctttcttattaaaattagtttttg<br>ctgtctaaatgtaaactttatccttaatttaggttttgttattagcaaattatgttttaaattaattggtggtgtcaaaagtatcatt<font color="green"><u>AAAATGTGTTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAGAAAAAGAAAA</font><font color="green"><u>AAAATGTGTTAA</u></font>aaagatattattgattgagcactctgtagtctcagtgttgccaggagatgtatttggtttaactgaaat<br>ataagatatttttgcctttagttatttatagccttcttaggtaaacgagagaaaacacatgaaattatgaaaaaagagtcagtggcgattaagtgacata<br>ctgtgtcttacaatcactacttggataaataattgattggtatgagctgaggtagtttgtcttgtggttcctgatagagtttctaaaattaaattactat<br>tccagtatcttcttggacctaaccatttggttaaaggtcaaattccttctgctacatatcagaaattccgtctgtaatttttatttgaacatttccctac<br>ctttttcaataatgtattc	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	572	241	NA	intergenic
0	chr5	37329577	37329887	1000628	0	+	238457; RIP_Alu_chr5_037_01	NA	NA	SINE	Alu	Yb9	ctatgcagatttagtctgacatcataaagagactaaactagcagtaacagaaacttaattctaggtctggcttcaccagttactagccatgtgacttaag<br>caggttatttaacatctctgctcttgttttttgcaatataagatggagatactacagttacctgctcatttccatcacaggctaatgttgtaaagcactg<br>tgtgatgctgctataaaagacacaatctactttgacaagtttttatttggatcttttatccttagcataaaaattacaaaacatatagtctgataaggtt<br>cagcagggtgagaaggatctttaagcactgatattttagatgaggttatagtaaataaatacaatgtaatcttgttcttt<font color="green"><u>TAAAGCAAATGATGATTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACGCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>TAAAGCAAATGATGATTCTT</u></font>aatgtaatgagtttagcccacaccttggtttagcctctttcaccaagagtaaagcatatttattaatat<br>tcaaaaataatatttcattttaatcatgatatacaggaaagcaactctcattatcagtttaaaaagtcaaaagcataatttccaagactcaaccaagtgt<br>aattagactaagtgataggatacaaaaatgcaatcaaaataccccactctatatctacaaagttactttaattaaagaaaataattttatgttatttaat<br>attttccttacccgtgatttgaacaactgatcataaacttctagtagtctaggtaatggtactccaatttcattcattgtctgtattacgaagcccacat<br>cccagttcaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:NUP155:NM:153485:33/35	
0	chr5	52267546	52267862	1000629	0	-	3878; RIP_Alu_chr5_052_01	NA	NA	SINE	Alu	Ya5	tgaactcactatccagaggtccttccctgcttaaaaggtacaactgaactgggacaaccagatgcagttgtccccttcctactgctgaagcataatctgc<br>aggcctgaaacctatggcatccctgtgcagcttctttagctgggtagggaacgccttgatctacatagatagacccaaggaaagccagtgatctacccaa<br>ctgagccttccagactgagagctcctcagatctgaagcagtttcctgggtttgtaaagacgaaatacatcctttaattctggaattctggaggttcctga<br>ccagctgcacctggacccttaaacatgctccctaactcttatcttcttgatttccagtcaaattctgtttcctgatattcagtt<font color="green"><u>AGAAATCCTGTGTTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATCCTGTGTTCT</u></font>gtaattaccatttttttctgattaaaaaatgttccttgtagaaacattggaaaatactgaaaataaa<br>cgtttcctatacttcaactaccttggtaacattttagtgtaggttacctgtcctatttgcatatatgcatatttataaaatttgtaacacaataaaatac<br>agttttgtaccctgtctgtaaaatgtattatgctatggcattttcctttaaatgtataagtttattgagaatatgactgttcataacaaccacaatatca<br>atattgttgactatgtgccacatgctgtgctaatcttcttatatgcattattgcttttaaccctgttaacaactgcaggaagcagatcctcatattatct<br>ttgttttatctatgagg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ITGA1:NM:181501:23/29	
0	chr5	64058899	64058900	1000630	0	+	16397; RIP_Alu_chr5_064_01	NA	NA	SINE	Alu	Ya4	attgggaactatctgtattagaatttggaagactatcagatatcatttcctgtgagcaatccatcttcctgtgctagaataaatgatttaataatacatt<br>aacagaaaaccctgagctctaaattcctatttgtttttatattaaagattattagttaactcctaacgcttgaaagtgggctacttttccaatttataag<br>atacctgaaatattaaaatacatgtattaaatgctctataaaaactacaaagtggcagcccctggtttctacaacctattctgtatgagaactgggtcta<br>aactagaaataattatggttaagtgcttttaaaaaatgcctgtatgtgcaaatttatgctagtatgaatgaaactgcacgcattaa<font color="green"><u>GAAAGTAGTAAGTG<br></u></font><font color="red">CACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTAC<br>TAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAG<br>CTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGAAA</font><font color="green"><u>GAAAGTAGTAAGTG<br></u></font>ataacttctttaaccagttagtttttaaaagagttaatagtaaaaatgcacaggtggccgaagactggaaggaagttgtgatgctaaaaattccttcagg<br>tctttcacaaccctcatcagccaccatatatatatatatatatgaaactgtcaggctaaatacatataaatacaaaggtgtgtgtatgtgcatataatta<br>catatatatatatatatatatatatttttttttttttggtgggcggggggcagatagggtcttgctgtgttgcccaggctggagtacagtggtgtgatca<br>tgtctcctgggctcaagcaatcctctcacctcagccttccacatagctgggaacacaggtacatgccaccacacttggataatttt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SFRS12IP1:NM:173829:4/5	
0	chr5	75471437	75471537	1000631	0	-	52811; RIP_Alu_chr5_075_01	NA	NA	SINE	Alu	Y	tcctagaaggtcaaacaaagcaaaggggcatgggaggaatgaattctgtatatttcaaggaattccagcatccaagtaaaaactacagaaagagaagctg<br>aaaacatgctcaagatctaccagagatattttctgttttattactattatatttctagagtccaaatagtgcttgtcacatagtagatgctcaataaatt<br>ttggttgagtgaacactctagctatcaatggaagatataggaatgccaagtagtctgacttggtacagttgaaaggaaagttttaagtaaaacaaaaaca<br>actactccatttctatccaaaaatatatcccagatttgtaaatatctatatttattctagaattatttagaaatattttaaaa<font color="green"><u>ACTTTCAAGAGCTTCTA<br></u></font><font color="red">CGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAA<br>T</font><font color="green"><u>ACTTTCAAGAGCTTCTA</u></font>aaaatggaaaaaagtcaagtaaaattccagttatatgtaaaagtattgtctttttaatgctttgatattattggtctagctc<br>tgttttcgtccagtataccaattgactctagctaatattgcagatgttttaaagaaaacctagtatctatgaagttggaatatttctccaggaaactagg<br>tgaacacccaagtaggtctcccaggatgcaagactggtttggacctcagtcttatatgttcagaaacccgatatgtcagcacactaaagacagatctatc<br>tcttagaagcagtctcccaatggtcaacctcaccacgactgatagaaaaaaacagaatgccagttggccaattaaaatgaaaaacaggactcccaagaaa<br>a	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SV2C:NM:014979:2/13	
0	chr5	79049468	79049765	1000632	0	-	pAlu5-79052320; 4235; RIP_Alu_chr5_079_01	NA	NA	SINE	Alu	Ya8	ttagatttgcatgatgctttattctctcaagcaatcacagtgcactaacgggaagtatataaaacaaaagaatgtaataggtcggatatctttctcatga<br>agtcttttagaatgcattaaatatcaattgttattaaaatgggaaagtcacctatgatcctgcttatattacaagctttgaaagatatattttaagccat<br>aaaacaccaagaaagcttgtgatcttttaatacaaactgttagtgttttatatgagtcttttaaaaaatggaattcttaaaagcaatcattaactctaca<br>attaatatttcaccaagaattaatttaatattaatgtgtttagctgaaaaaaatatgcattgctgaataacagttcagcaaactataatat<font color="green"><u>AAAATAGCT<br></u></font><font color="red">GGCCGGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGTGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AATAGCT</u></font>taggttaaaaggaacttttatgccattagggagttaagaaaaaatttcatgaaaccatgaatgaataaattgttacacagcataattatgccg<br>taatagaaagtgttcattttgtagatatactaaaggccattcaacatcattgtggatggaaagaataaggatcctgttatcacaatgatcaggtacttta<br>gaagcctggaagttagggccctctactatttgaaacctggttatcttcccattcattaactctataatccagccaaacataggcttcactcttcatgcct<br>ttgctgatatctttcttttcacttagaatgaatcatctttgtatattttatctcttatttattttagagaccagctcatatatcaacttctccatgta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CMYA5:NM:153610:1/13	
0	chr5	79592955	79593258	1000633	0	+	12749; RIP_Alu_chr5_079_02	NA	NA	SINE	Alu	Y	aggttgggagttcgagaccagcctggccaatatggtgaaacctcttctctactaaaaatacaaaaattagccgagcgtcgcggcacatctttaatcccag<br>ctcctcaggaggctgaggcacaagaatcacttgaacccaggaggtggaggttgcagtaagccgagaaaacaccactacactccagcctaggcgacagaat<br>gaggctccatcttgaaaagaaaaagaaaattaaaaagaaacagtctatacaggctcattccctttccccactcagagttttttcaaaggaatgtggccag<br>atctggaggtttacctgccttctggctctgaggactttgcagttactatttaaggtctggttaatagcttcctttgcatcgtggttggtt<font color="green"><u>AACAAGAGTA<br></u></font><font color="red">GGCTGGGCAGAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGG<br>TGAAACCCCATCTCTACTAAAAATATAAAAAATTAGCCGGGCCTGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCGGCCTGGGCGACCTAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AACAAGAGTA</u></font>gaggtaatgttagcagacataacacgaaacagtggcaccttaatttttattttaagtactctgcagactttttcaggggagacttg<br>atgttcataacacgtagataattttacagtcaagctcttttgatgtgactttttcagtaaccagcagtaacagacctgttttaataagactgtatagctc<br>ttggcagaccatgtgaaatatttcccccacaaaaattttcttaaattaactgaattagctccttttatacaacataattatatataagtatatataacat<br>aaatatctagcttataatttgcttttttctcctcctgaatttgaagatttttttggtagagttcaatgttgagtttaaaaacaccacacactggctgggc<br>gtgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr5	80786913	80787227	1000634	0	+	17409; pAlu5-80789769; RIP_Alu_chr5_080_01	NA	NA	SINE	Alu	Yb8	tgcagaatgagaataaagaattgcaatagtattcactgaggaggacaagaaaagtagctaaggaagagtgaaaaaaacaaactgctggtaaagcatcagg<br>gaggacctggctgaggctgaacatcacagatcctaattataacgtgttaagtataaggatagaaatacgcattaggcattgtggaagaatcaaaggtgtc<br>ctacaaatatttcaaatttaacgttcaaaaaaaaacaaaaaacaaagcccccaaacctcattgcctacctttacacctgcttcttttcctgtgatcctag<br>ctcagttgtgttattcccattctcccagctacttggattcaaagagttgaaatcaccttcaaaactcttaccttctctttatccct<font color="green"><u>AAATCCTCCTTCTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAATCCTCCTTCTA</u></font>accctaccctatactttatattaaatactcattaagatgaaatgaaaggtaaaaatgaagatgtagaagat<br>aagcaaaattagaggattagaaagtcaaacacagaatttgaagaacttattatttgacagagaataaaattaagggccacacatactgtctggctaatct<br>agacagatcactcaaaaactgtgatgagaatccaaatattctgaaatattctgagtcccaatacccatgattgtggtgctgtggtagagggcagagaagt<br>aactagaggactttcattttgttaaatgatctgtaacattttagataagtgcctttcttcaactgtgaagtttaaagctatcttacaagcactggtttac<br>tagaaataagggaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SSBP2:NM:012446:10/17	
0	chr5	81218247	81218578	1000635	0	-	pAlu5-81221117; 19522; RIP_Alu_chr5_081_01	NA	NA	SINE	Alu	Yb8	ggtcagtttattgttcctgatcttctcagtgatgtatagatatattgcatagggaaccccggtgactagcttactattccgtgcagttagcggggatccc<br>cgcaagcagctctgaggccctaagagaagtccagcattttactatatcttctgccattagcaagttttcttaaaatctgcatataatctacttaaagatg<br>tcaaggctgtttctgctttattctgcaagagacaatttttggttttgcaagttctagtatgggtgggtggtggctatgggagagactgcacatcacaaag<br>caaacctatttctggataatagcagaggaaaattttgcagattccatactggctggtctaacattgcacagctctgtgtaactgtaaat<font color="green"><u>AAGAAAAGCAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAAGCAG</u></font>tactaaagctacagatatgcctttatttcccccagcttttattttgaaagattacaa<br>agctacagaaaagttccaagaatagtgagatgaacctccatataacctttatctagatttcccaattactaaacattttgttacatttgctttctctctc<br>tgtacatatgtataggtgtatttgtttatgtgtgtatatatatatatatatatatatatgcttttatatgcatacacattattttgctgacacttttctc<br>ctaataataaagacattctcttacataaccgtaagactggaaatttaacattgatatgataacattacatattacaggccatattcaaatttcttcaatt<br>gtctcttcaacctccacctcctgggttcaagc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	82192489	82192787	1000636	0	+	pAlu5-82195345; 401; RIP_Alu_chr5_082_02	NA	NA	SINE	Alu	Ya5	ttctgtacatgtttacatgttccctacatatccccttaggaggacacagagaaacacttccttgttctgattcttactttgattaacatttgttaagcac<br>tcaatttgtgcagagaactatgtgagacactggagttgaagagggagaaggaagaagatgtacaaggagacaatacaaggtccaaccatgcaaagaagtg<br>ttgtatagttttaatgaaggagataaaattgtacacagatactacaagaggcaatgaaaggaggaattaagatattctgaatgatgtaataattatagaa<br>atcactagcttcaaattgccaaatcagaacattacagttctaatctactgggatagggcaggagagcagtacagagggaatgtt<font color="green"><u>AAAGAATTAGAGCTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCGGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAGAATTAGAGCTCT</u></font>caaatagaaatgaaagtgggtatgacagcattctatacattccagccttttcaacatcatggtgtatgtgcatagacagataaat<br>agataggtagacataattttatttttacaatgcctcgaggtgtaaaggatttgtgtcagaggaaaacaagtcaccagcgacctaggccttgtccagctgc<br>ttccaaggttaacaggactggtgcctctgaggcccaccatacccactgggaagctctgcatatttgagacatgctccttacatggattttcccactagag<br>agtcagaatctcaaatataatatgaaggaatgttggcccaacatagttgaccatggtacatgtgatgtggcatggttagcaaggcgatatgagccggga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	90610459	90610742	1000637	0	-	5344; pAlu5-90613324; RIP_Alu_chr5_090_01	NA	NA	SINE	Alu	Yb9	gaccgcctgcatcaaaagcgccgcggtaaaaatgcagattcttgaagctcacttcaaattacagactcagaatgtcctggctgggtgggggcatggaggc<br>acctgtctgaggtcggggcctagaaataatccatcgtattaaccaactacctatcagtgattcttaggtacatttaggtttgacaactatagcaagaggg<br>cgaggatgtgagacattatactgggtagactctaggactccttacgatatagaacactgtgttctaaaattgatgtttaagttttgatggaaggaaaaaa<br>tatttccaaatttggttttatatattatattgtttgctttaactgtatatttatatagacaaatttcttttctttttttttttttttcttt<font color="green"><u>AAAGAGAGA<br></u></font><font color="red">AGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCG<br>CGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCAC<br>TGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAGAGA</u></font>gtctttc<br>tgtgttgcccaggctggcctcgaactcctgggctcaaggaacccttccgcctcagcctctccagtagttaggactacaggcgtgcaccaccactcggctc<br>tttttctttcttcctttttatttttatttacttattttgagacatggtctcactctctcgcctaggctaaagtgaagtggtgggatcttggctcacttca<br>gcctcaccctccccagaatcaggtgatagtcccacctcagcctccccaggggctggggctacaggtgtgtgccaccatgcctgaataatttttgtatttt<br>tttaagagacagggtttcaccatgttgcccaggctggtctcgaactcctgggctcaagggatccgcctgcctcggcctcccaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	95369083	95369421	1000638	0	+	32645; RIP_Alu_chr5_095_01	NA	NA	SINE	Alu	Ya5	ctagtagttcctgctcaaagcaggaaatcttggaggtggtacagagtgttcttttcattgtatgtgcagattaagcttccctaagaataatgctatttct<br>gggtgcaagactggattaaccatccttgattctgttgactttcactgtgtgaagaatgactaaataaatttcatttctttggctatttctttgacttttg<br>aatttagttataactcttttgcaggcttttatggacagaatatttgtatctccctaacattgctatattgaaactctaacctccaatgtgatggtatcta<br>gaggtgagccccttgagaggtaattaggtttagatgaggttatgagggtggggctctcgtgacgcgatgaaattagtgccctttt<font color="green"><u>AAGAAGAGGAAGATG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGAGGAAGATG</u></font>tgcggcactgaagaaaggccatgtgagagtgcagtgagaaggtggc<br>tgtctacaagccagaaagagggccttcaccaaaaactgaatcagctggcatcttggtcttggacttcccagcctctaaaactgtaagaaataaatgcctg<br>ttgtttaagtcacccagtctatggtattttgttatagcaacctgagctaagatgcagaccttctccaacttctccagttttttgattaaatgtaaacaga<br>actgggcaattatcaaacctttatcaatattgagaatatggaggtgaaattctcctacttcctttatatctatcacctgttcacttttcctgttactata<br>ctctaaaaccaaatccaaaaatatatgatttttgaagac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr5	97871851	97872150	1000639	0	+	8484; Yc1RG194; RIP_Alu_chr5_097_01	GGGATTAGAAATGCAAGTTTGAGC	AGACCAGAGAGGATTTCATAGGG	SINE	Alu	Yc1	catttctctgatcacagaattaattattttgatacctttctttaaataacagcatcatcaaaagctgcatattttggcaatcacttatagattcaattat<br>tggttacctttgattgaacgagtaaccagaatgacaacagccaaggttgttttgttcctattgcctttgtgagcctttcctgggttttacatggtgacat<br>tcaaactggccgtaacaaggcaagtacagttactgtacccattgaccatggactactcttacttagaagctgtttttgagtaaattccaatgtgctacca<br>aactttaattaatcaatttcctgttatatttttgccagctatataaaaaagggattagaaatgcaagtttgagccacctccctta<font color="green"><u>AAAAATGCAATACAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAATGCAATACAA</u></font>ttgcaacttgccacacaacattaccctatgaaatcctctctggtctcaaaattatgaatattaattgtttcatccagtaccttat<br>gttcctaaaatattttacaatcatgtttagttaatcctcataaaatcccatttaggcgtgccagcatttatattctcatttcataaagcgaggttcagaa<br>aaggtaaataatggtataagtggttgagcaagccagttgaaaagtgagattgaaagtctgtgtagccattctcctttcagcagctcactgtcttccctac<br>aacatttccatgttaaagtgctccagtggacaaattttctttcctgtatctccagggccttattgggccccaaaacctttatatttgcttggtaataggt<br>	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	65	411	95	NA	intergenic
0	chr5	99202229	99202527	1000640	0	-	16142; RIP_Alu_chr5_099_01	NA	NA	SINE	Alu	Yc1	aatttgttccatattaaactgtagcttgattagtgcaattgaataaaatgatattattaattacagatggaattctattctacaaattttataaagaaat<br>taaataaaatctttctgttattattactgtgcttactatatgtcattaggtctttatttaggaagattagttttgttaatatcgatttaacaagctgtct<br>catgtaaattaaaatattttcgtgatgtcatctctcactggcatcaagaagggtttttatcatatttgacactgtaatgaattttagaaagcttagagat<br>atttagaattactgatataattttaagaaatcagacatagcttttgatgttttctctaagatgagtatttttattttgttttgat<font color="green"><u>AGAAAATGATAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>GAAAATGATAAAGA</u></font>aattttcaggtggttttaaagactgtatgaacaatgtacagcaagtccacttgttttataaggaatctcataccctggatgcttag<br>ttaatttctatttgccactttagatactctcaaacttcagtaaattttttcacccagtaataggataaatacattatgctttggtagtaaatcacatgct<br>tacaaataaaattaaaatcaactgaacccccttatgtaaaataatttttaataataatgtacactaaagatgcttactataaataaaagtgtagtgtttt<br>gaggtatgcttaatggccagcctaccctagtttcattctttagtcttaggtgttttctcactattacagtgtttgtcaaactggcattcctaatgagga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr5	99951447	99951737	1000641	0	+	Yc1NBC50; 12923; RIP_Alu_chr5_099_02	GGTATGGGGCCAAATTTAATCCA	TCCAAGAGAAGCCAAACCTACAGA	SINE	Alu	Yc1	tttcacctacattttattggccaaaacaaaccataaggctgcacccaagttctacaaggcaaggatagataattctttcgcaaggaagtaaattggagta<br>tttggctatccacaatgcaaacttatttttacctatatgccaactggctttccatagtgaatcaagtcaccatgatgtcagtgtatatatatatatatat<br>atatatatatattgtgtgagcagagactaaagtggaaggtatttgttcttctaaaggaatcggcctctcttcagatcccactaatagttaccatgagaaa<br>gtccttgcctgtgttgttagctcttagtttttactttccaagagaagccaaacctacagatattgtgtatgaaatatccctaattt<font color="green"><u>AAAATGTTATTAGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAAATGTTA<br>TTAGC</u></font>acagaacacatatttggattaaatttggccccataccttatattttatgacatggaaaaaatcatatactgtagtatcttggaaataataattta<br>tttaataactgctgtcatttataagctagctttttcattaacactcattagaagtaagaatcaaagaataagaattctgataagtggctgggcgcagttg<br>ctaactcctgtaatcccagcactttgggaggccgaggtgggcagatcacgagatcaagagattgagaccatcctggccaacatggtgaaaccctgtcttt<br>actaaaaatataaaaattagctgggagtggtgatgtgcgcctgtagtcccagctacttgggaggctgaggcaggagaatcgcttgaacctg	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	406	101	NA	intergenic
0	chr5	101011953	101011987	1000642	0	+	32574; RIP_Alu_chr5_101_01	NA	NA	SINE	Alu	NA	agtagagcagttgtttgtagctgctaatggattaggacaaggaaaggggagaataatgagtgtggtctgtgcctccagtttgttggaacaacattgcagg<br>aatcccaatggctttatgctttctgacatttggatttactttaaagagatttgtcccaggatatctgccttccagctgcagctattttagttcagcagtc<br>ccaaactattttggaaccagggactggtttagtgggagataatttttccacagatgcggggcagaaggggaatgatttgtggataaaactgcaccacttc<br>atatcatcaggcattagttagattctcatgagtacacaacctggatcctcacatgcgtggttcacaataaggttcatgctctt<font color="green"><u>AAGATAATTTAATGCCA<br></u></font><font color="red">GACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATAATTTAATGCCA</u></font>tggctgatctgaccagaggcagaactcagcccaccacccacctcctat<br>tgtgcagcctggttccctacaggcaatgagcaggtacaggtctggggcctcagggttggggacccctgttctaatagaaatgctgaagtgctagtggtta<br>ggaatataggaggccatatgagaagttatttaaatagagcattacttacaacaggtaataagttcagtgcagcagccctcaaagaaagcatttcaaaaaa<br>taagcaaaagagtttcatgcaagagatagacaaaatttggtcatataacatacagtgccaaattacatcagctccaaacaaagaggaatttaattcaccc<br>tgactctaggtgactctaccccgatccctttctgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr5	109078905	109078906	1000643	0	+	2455; pAlu5-109081855;1104685722827; RIP_Alu_chr5_109_02	NA;NA	NA;NA	SINE	Alu	Yb8	ttctgtgaggtttggctttatttagttttttgttgagtacttcttgagtacctagccttgttgtcatccatgataagggaacagcaaaaaaaaaaaaaaa<br>aaattatttttgttgtgtggtctaaatctgggctggacagaaaggagttgcagagcaaccatggaagtcaggcagagcaagtcaggagggtactgggaga<br>gctgcaggactgaaggaagaaacagacactgctaacacatcctcctgcccagcttgtttccaaagatttgtcagcttatccttgagaagattttatttta<br>tttattaaactcatatattccatagggagataaatattattggcttaaaatactttgtattgactttcatataatttgtttggccttt<font color="green"><u>AAAAAAAATTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AACAAAAAAC</font><font color="green"><u>AAAAAAAATTTA</u></font>ggatgtgatttttgcagtctagttttaacataatttaaattttacaaaaggttgtttggttgtgttgtcacatttaat<br>attatagagactatgaagaacaaaagtaaagttttagtttttttcccaccgttttttcctttgcatcccaacattattagccagaaggaatgctgcattg<br>aaaagctagaaaacaataggatacataaaagctaaatctcaattttaaaatttttctcaatttttagatgattatgcctggttgaccctgttgtagtttt<br>acttctaggataagataggtagatataacatatgctacatggcagaatagctatagatagatatatttttgttcaggcatagatttttaatatacatgag<br>atttactata	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:MAN2A1:NM:002372:2/22	
0	chr5	112909330	112909635	1000644	0	-	239016; RIP_Alu_chr5_112_01	NA	NA	SINE	Alu	Ya5	tgagaagtgaatgattgagctactgtaacattttagttttcctcacatggcttaaaacattagaatactggactctgggaaatgtacaaactgtacataa<br>gagcagaggagagacctgagtctacacaggatgaccataatcaaattaacagtctagtattcactaaagaaatatcaggaagaaagctaaggataatact<br>taaatacttaaaatgcatcataaatattttaaagtcactgttttcagaatttaaattccttaactttcaagtaagattgctaaactcttcagagtaaata<br>ttttttaaaataatggaaaaagaaagaacgcaagaaaactgcagatgaacaaatatctacactttcaaatccaaaaagttactttt<font color="green"><u>AAAAATGGAGATCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAATGGAGATCA</u></font>attatttttcaaaaaatcaataatgagggcccagcacagtggctcatgtctgtaatcccagcactttgggaggcaaaggt<br>gggcaggtcgcttgagcccagaagttcaaagccagcctggccagctcttcaacaaaagaagagaaacaggttttgcagaagagatgaagtattcagtctg<br>gggcatattagaagtatctaaatccaaagctctggaggctgaggtgggagaatcacctgagcccagaagtcaaggctgcagtgagccacaatagcaccac<br>tgcactccagcctgggtgacaaagtgagaccctgtttcaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaaaagaataatgagctttaa<br>aaaata	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:YTHDC2:NM:022828:10/30	
0	chr5	114119982	114119983	1000645	0	+	20676; RIP_Alu_chr5_114_01	NA	NA	SINE	Alu	Yc1	taaggattgtttgatattttaaaaccttggtaacttacaatatcaacaatatattccttggttgatatcactataaactctctcactggaagattgcttc<br>tattccttcaaaaacacacttagaaccctgcttcctggcagatagtagggacataaaaagctgagtcagcccggtagactttctaccaggagaataatta<br>ctaactggcatgcagcctgcagaaaaaaaatctatgagggtggaaactatcatttacagggaacctaatctcaggagtaacagagttaaacatggtgttc<br>tacatttctattcttgaagcgacccagggctaacacctgccaaggttttaaaacattataaaaggatatttagtaatggag<font color="green"><u>AAAAAATAATAGAATATGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAATAATAGAATATGT</u></font>taatgtcatccccattttattttttaaatgtgatagagattgataatatctagataactagacaaactaatggctaaaag<br>aagcatacaaactcaaatgccaagaagcatgcaaacacaaatcaaaatttgaggatgaactcaccccttgtgaagttttcttcctgaaagacctggggtc<br>cagaattgttttttccacaacacttaaaaatgtggctaaagcttccctatttatttccggggcaaagctgcatcctgtcccatgctatatctcaaaaatg<br>agaagcagaatccgtacttcccatgtttggtggtcacagtccacctctaacaagattgtttataatgatgagaggtgttccaccaacaaggctcttttgt<br>a	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr5	115922048	115922356	1000646	0	-	Yb8NBC597; 238944; RIP_Alu_chr5_115_01	TGAGGTGTTGCAGACGATGT	CGCATGCTTTAGAGAATACCC	SINE	Alu	Yb8	ttgggaccactcttcaactttagggaggttcataccataatatgaggtggctaataggaggaagacggaagcacattcattgcatctataaaaaccactg<br>ttaaaaatgggcaggaggaccaagcgctaaatgatctgttcatgtaaaaatcggggcatatatggagccacctagttcctgtttatttcattccaaacaa<br>ttttactttatgaaagtttttaaattctgaaattagatatacatgtgttctccctctccccccggctcaatgttgggcatatttatatgagtgtttgtct<br>cttaaattgccatgtgcaactgaggtgttgcagacgatgtaattcacaaaacaaataacgcttaaattgtgttgtttttatactattt<font color="green"><u>AAAAGAATCCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAGAATCCTT</u></font>aaatgatgggtattctctaaagcatgcggggcttaaaacctagatgatggattgataggtgcagcaaaccaccgtggca<br>catatatacctatgtaacaaacctgcacattcagcacatgtatcccaagacttaaagtaaaagtaaaaattaaaaaagatgggtattctatatttatctt<br>tcatgttacatttttctttgtggggtttctaaataaaacttgtaacatgaatgttttattctcattctgtattttaaaaagaagctgagtaacaaaagga<br>aaacaaaacaggattggaaaatcaactattttcagggggctttaacaaactgaatatctagaaaggttctagagaacctttatgaaactgtttgtttgga<br>tgtcttatt	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	429	108	NA	intron:SEMA6A:NM:020796:1/19
0	chr5	119043057	119043363	1000647	0	-	pAlu5-119045917; 4754; RIP_Alu_chr5_119_01	NA	NA	SINE	Alu	Yb9	taactttttaaaaagcaaatatttaagggccagtagaatccacatatcttccatacggatttatctaatgtcaataatctacatttctttgcatcttagg<br>aagtagtattctcaggctgaatcgcaataagcctccatggtaatcacatcagttatcaataatttcaattctgtggggattttttttagcttagttaact<br>caaatataaatccccatattaaatattctcaaacactatgttctctggctttatcactagaagaaagttgtaccatgctttaaaatataatgaaatacaa<br>ttttttaagagtggcatttttagcaccacttttatagagcacttggtgcaggaatcaaaattattagcagtgccttttttgcttgtt<font color="green"><u>AAAGAGACTTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAGAGACTTCTC</u></font>acttttggctgatggctgcatctctaaatagattttacactccctgctcagagatggaaaagcacatacagctctcttca<br>cattcaaataacaatctcttcactcatcaccaccgaagtccaatacccatccagaacctatcaaattaattaccaaagcttttctgctctcaggttctca<br>cagataaagcatgcctgtgagggcattttacacgttttatcccactattccacaggatagtcttacattccagaatgtacctaaatggacttaaaagttc<br>ctctcctgtgatcctgtgaattaatcataatgactgccctggggaaaaaagagagtcctcgataggagagatccaaaaagaactgctgcttggtaaaagc<br>tccaggt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	122302253	122302562	1000648	0	+	7013; pAlu5-122305116; RIP_Alu_chr5_122_01	NA	NA	SINE	Alu	Ya2	agaggaggaccctctccccagtgagtttggacagttcttagctattcatggtcaaaaaaaatcctagattttccaggattctctcttctctcagtttctg<br>cagctctattaataattttacctattcttataattatataatgaggtctactagcattaatagaatagaaattcacaaatctctcaattttgaatattgt<br>tggcagccttgttaaaatatttgagacaactttacagggacatagagataaaaatagctttgtggagcagagttttatttgggatacactgtctaatttt<br>atgtattatcaaggggatagcagctgctagaagtctcctttacttgcccccttgtgattgtattcgatttggcaaaaaggtaacttt<font color="green"><u>AAAAGGCAATGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAGGCAATGAA</u></font>atacaaataacaatggggtataaaaataaacataaatctgtaattttgactgtaagattgtgtgctaagaagggttg<br>aaatgggtcaaaaatttaatcagagtactcaggcttgactgactgctgctgccacatcaacaaccttacccttttattgcagttttggtaccctcgattt<br>ccatatttgaatcttgtgacatgctttgaatgttagagtttaacataaaatattttccctttaaatgtagttaaatctgttgttacttaattctcttgaa<br>atatttaactatattacccctccaaaaattagatttgtttattagcaagcatgtatgttgccttgttttaataggtgtttcttaggtttgtttaggagtt<br>gtagcccctc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SNX24:NM:014035:2/7	
0	chr5	128342755	128342756	1000649	0	+	238115; RIP_Alu_chr5_128_01	NA	NA	SINE	Alu	Yb8	aggtataacttaaaaatagaaggcaaaatcattataaagccaataatagaatgcatacatgatgatggtcccataagattgtaatactctattgtacctt<br>ttctaagtttaaatatatttaaatacacaaacacatattactgtgttagaattgcctgcagtgttttcagtacagtaacatggtgtacaggtttgtagcc<br>taggagcgataggctatatatcatacagcctaggtgtgtagtgggctatatcacttaggtttgatcaatgattatcattcagtcttgtgtgaattaaatg<br>taaagaactcaacagaataccaggatcataaagtatattcaacaaatggatgcaatcattatttttaactgcataatggcagagac<font color="green"><u>AAGAAGTCACTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGATTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAGTCACTTTT</u></font>ctcaggtctcttcatttgagatttgttgtatggagggaaacccacgtagtgtgttacacaaccttagtgagttggc<br>tttaaacagctttcttgtcctctccagtagcagtacatccataactacttcccaaccctcagtggccaaggttggaatgctctcagacacaagtttggag<br>tgaggtcgttagctcttctctggccaaaaagaagaaggttcttctactgttaataacaaagaggtcatgagggagataaccctgatggggtctgagtctt<br>gcagaaatactaccttagtattcactgcgttttaaaaatatatatatcatttacttactaatgagtctgtctgtagattgctttggtctgcatttactct<br>tctaatttca	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SLC27A6:NM:014031:2/11	
0	chr5	142335197	142335198	1000650	0	+	16830; RIP_Alu_chr5_142_02	NA	NA	SINE	Alu	Ya5	atcgtttcaaatctccattggccctcccctacagttctgaaagattctgtcttacacatggggtggtcgaggaggggaggcaggtttgtaatggaaatga<br>tggtagactgagcaaggagatgtagcatctgcttcccttgtgctgctaaacggcatggacttggaaaagctgctcacccctcctaggcctgtggttctgc<br>agctttaatataaaaggggtaggactagagaactgcgtctacagtagtgattttcaaattatgtttcaagaatctttgggactctacagttgctgaggtg<br>aaagaaacctttctcccagcttcttccagagctgccctgctttcatcttgctggtgtactggggtttcacattcaatttttatc<font color="green"><u>AAAAATAGACAGACAG<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAA</font><font color="green"><u>AAAAATAGACA<br>GACAG</u></font>actaatagttttaaaaccatcagattaaatgacctgaatgtggttattgtttcttacacatagttagctacttaataaatagttttaattcaact<br>tagctttgatcatttagcaaactataaagatgatccctgaaagtttagtcttagctttgttctttagatgtttcttgtgtgtatcatctcccaatcgaca<br>gtcagtaaacttcatcattcccagtacctaagattgcagtgtgtatacttgtgtatactttattacccagcgtccctgagattacttaataaaggatttt<br>ataggataaaagtagctccagtctttgtgtcctgggttgcctggagagtattaagaaaacataataaaattggttgaggtgtaccatac	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ARHGAP26:NM:015071:11/23	
0	chr5	170790116	170790422	1000651	0	+	13564; RIP_Alu_chr5_170_01	NA	NA	SINE	Alu	Yb8	ccagcactttgggaggccgaggcgggtggatcatgaggtcaggagttcaagaccagcctggccaagatggtgaaatcccgtctctactaaaaactataaa<br>aattcactgggcgcggtggcaggcgcctgtaatcccagctactccagaggctgaggcgggagaatcacatgaacccaggtggcggagattgcagtgagcc<br>aagatcacgccattgcactccagcctgggcaacagagtaagactgtgtctcaaaaaaaaaaaaaaaaaaattgtaccaactcatagggtttgttctgggc<br>attacataggaagacatccctcaagagattcctagcacagaggaagtgctcaacacacaatgcctgattaagaaacaaaactaaact<font color="green"><u>AAAGAAAAAAGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGTAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAGAAAAAAGAG</u></font>taatgattgttactaatataatctttttctgagataaatattatcaacagtccccattttgctgatgggaaaactgagag<br>ctaaagaagtcgaataagtgggttgactgggggtgaagccaggtgacagctaaggtcagccagtgctggttcctgtgtgagtgttgcgtgtgtggtgtgt<br>gtacataggtgatgtgtgatgtgacgcacatttgtggaaggtggaaatgggggccaggaagaaagaggaaaatcccaaacatgcttttcagccatgagtg<br>ggctggagaggctaaaatcttcaagccagagggagtgatggaggctgctggatgctctggtgtgaggtggtaccttggttgatctctggaagctggtact<br>aggctgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:FGF18:NM:003862:2/5	
0	chr6	3995257	3995559	1000652	0	-	404; pAlu6-4040151; RIP_Alu_chr6_003_01	AGCCTGTTGTTCCAGTACATATGAC	CAGTAATGTTGTACGAGCCAGAG	SINE	Alu	Ya4	taaacttaacacttatttccaacatttcaaacacattaaattcattttaataccagctcagtgtgtggtattaaaacacacagatatggcaattaacttt<br>ctattggaggaaaacaggaacaaattaaaaaaagacagattctcatcactctgataaattttcacttttttgcaggtcaccatagtgacagctaatcaac<br>atgatcctttcatttctcaactcgtcttcagataaagcaaaggacggcataagacagacaatagagggaaggagtttaagttgttattggtgcatacagt<br>aggtactaaaatgcactgaattaaaaataatcagcctgttgttccagtacatatgacatatggctataattttaaaatccagtc<font color="green"><u>AAAAACAACTGTTTCC<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTGTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTATTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAACAACTGTTTCC</u></font>attactttataattgcaatacttgttttacacattctatcatgtatcactttaaaaaaatagtttaaaaatatgttcttct<br>gtaagtatccgtactgttaaaggtttcctcacgtcttctgaacttacatgagctcattgtttctgatgatctttacagccacttcttggttggctcttgc<br>attatctctggctcgtacaacattactgaatacaccttgcccagtgtagccatacacattgtaacgtttatctaggacttcacctatgttcacacctaaa<br>aaggcaaattgaaaaattagaattctgactataataaatagaatcagaaagtaggaaacacagtgcagtcatttaaaaattgtgttaaatctctactatt<br>tgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	596	291	NA	intron:PRPF4B:NM:003913:9/15
0	chr6	8172939	8173240	1000653	0	-	Yb8NBC589; 3936; RIP_Alu_chr6_008_01	AGTCTTAATGGGCGCTGAGA	AGTGCCTCACCCAGTAGCAC	SINE	Alu	Yb8	agcctgagcgacagagcgagactcaatatcaaaaaaaaaaaggaaagaaaagacacacaagtcctcagctaactccagcacactttctttaacatagtaa<br>attactttaaaataaatttactaaaatatatccagttagctagtggaatttcgttggggtttgaggtttttcctgagttgtttaaattgactcagtcatg<br>aatgactttgtaaattaaaaattaaatggactttcaaaaaataaaatacatttactcaaaataaaattacttaaaaagaaattcaggagtctttactatt<br>aagtctcacgtagcttggactaatagtctccaagttcagtgcctcacccagtagcaccatcactcagagcaacagaagtctctt<font color="green"><u>AAAAAACTTCACAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>CGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAAACTTCACAGTA</u></font>aattaagtacaattagcagagcaaacatcaacactaccagcccaggaaagaagtaatcgctcagccttcattctcagcgccc<br>attaagacttgaaccatttctcaaatcagtgatctttttaagtgatcatcatcatgaacgccctcctgaattagggcctcctcattatggggcacataat<br>gatattaaacttcagcctttgttaagaagtggaggtaataaagctttccaagaagcgacagcttataattttgatccaaactataaaaatagctaagtgc<br>ttcctaatgctttcataagctaggctttttaaaatgttcctttaagaagcatttccttgaatgacagacataaacggctggaagagacctttgaaagcag<br>at	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	472	154	NA	intergenic
0	chr6	8959832	8959923	1000654	0	+	33366; RIP_Alu_chr6_008_02	NA	NA	SINE	Alu	Ya1	atatgaaaatggcataaaaataaatatagttatgataacgatgtataatacatttattggtttattgttttttcctttaatattttctcatgaaccctat<br>tcaattgtacatttctcacaacaatttaaaacaatgacaagacttcattttatttgttgatatttttattcattgttaaatatttagagtaactattttt<br>aaaataattttgataaagttttcataaatgtaatgattcccatcaatgacttactattaccattgtagtggtactacagtgtgtggtcatttcaggtttg<br>tgatgcacattgacagcttgtttcctgatgttgtcccaactacattcctactggcagaatatgagtgagccagtagggcagggt<font color="green"><u>AAAAAATGCTCCTCAC<br></u></font><font color="red">AGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATG<br>CTCCTCAC</u></font>cctaaagatacatatgtcctaattcctagaatctgtcactgtcaccttttgtggaaaaatggtctttacaggtgtgattaagtcaacaatct<br>tgagatgagaagattatcctacattatacatgtgctcactaaaataatcacaagcttccttacaagagggaggtagagggagacttgacttcagacagaa<br>aaggagaaggcagtgtgacacagaggcagagactggagtgatgtagccacaagccaagcaatgtcggcagctgacaaaagatggaaagggcgagaatgaa<br>ttctttgctagaacctccagcgcaagtgtgtccctgctcaaaagacatcatttttcagagagtttacttgtcatgatattaagtttatccat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr6	23408356	23408663	1000655	0	-	30935; 10655; pAlu6-23362812; RIP_Alu_chr6_023_01	NA	NA	SINE	Alu	Y	tcacagttgaatacagaagcttttataagaaaccaacgaggactaggcatctcatttgcataatgtgcagatttctggtagctccaccccatcctcctag<br>tatgcatgtgggcccttagcttgagttactccatattgctttgttccccttactgtgtatgtgtgaggggacaaaattttccattttgggcatgtctggg<br>taaatctcctgtgtagcctttcttacctatgaggctgtgggcatgcctcaggcaagcctccctgtgcaagttcccttatctatgcctgcaggttgttctt<br>ttgtttgaaataattcaactgaagacccatcctaactgcctgcctaaccagtttgttccttcctcctctctcaatttcagtttttt<font color="green"><u>AAAAATATTTTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAATATTTTCTC</u></font>aggtggtagttaaggtagcacaagcctctaatattcaaggttattattcttgttattcaagaatataatattcaaggt<br>tattatattcttataactttgagatagattttaaatttatgagatcttatctgaggctatctacctgaacattaacaagttgaagaagatatataatact<br>tataaacaaatattcactgtgaaattatctgtacttatgaaaaaacgaaaattaagttttgttaagtatatcttaaatgttaggacccttaagaacatga<br>agaaatgtttaagatataatttttaaataaattaaagcaacataagtatctagatattttggctgcaactttataaacatgttaaacatatttgttgaat<br>ataagaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	28298187	28298511	1000656	0	-	pAlu6-28252653; 53100; RIP_Alu_chr6_028_01	NA	NA	SINE	Alu	Yb8	agaaagaaggaaagaaaagaaagaaagagagagaaagaaaggaaaagagggagacagggaaaaaggaaggaaggaaggacttggaggattggtgacaaag<br>agattattgatggaactagctcgtatgtggatagatctcttagaatggatatcaaatgtacaaatatttgtgtcctgtatgaatcttcattaacccactg<br>tgtcagagggtttcagtaagcaagtgaacaagatgatggtgaaacagaacatggactcctcctcttcatagcctactgggatccctccttaagcatgaaa<br>ataaaggaaaaattgtgagtcccttcaagggaaattccaggcaccctgcaaccagcaactagggaaataaattaataacctgctaagc<font color="green"><u>AAGATGATAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATGATAATA</u></font>atagcataaacaatagtcacccaagtgagtcagagtcatgagatgtttgtttccttatagaaa<br>ctaaagataacatttgacatatgtccttgagttgagttgtttttcagaaaccaggacccccaccagatggaaaatgttgatcactgtcatatagaccttg<br>acagacaggaatcagaagatggataagcaagttctagaaattttccagcctttagctcacattggagaaccccctcatccatgccttaaaaactcttgct<br>tgtaagccatcttacaaagagttcagatcttaagtgttagtggcccaataaccttgcttggtgctctacaataaatgccttactttctctcactgcaaat<br>cctagtgtcaatgtttgactttgct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	37402951	37403254	1000657	0	+	238692; RIP_Alu_chr6_037_01	NA	NA	SINE	Alu	Y	cagaaaaagaaatcttaccacacagaggtgaatatcacaaattttaaaaaaattgattagtatgcattttattttatgtattaatatttaaaaccattat<br>tctgaggagattgatggggttcaccagacagcccaagagtctaaggtacagaaaagactgagaccattataaagagagcctgcctaacttaggatacaag<br>tggtctacctgaggagaatgttagcaaaaagaggcaacaccttttccagttgttgtgggatagggacatggtgcgggaaggaggtaggaagcagcagaga<br>tgggtaaaaggggccagaggccagggagtacatggtggcatgggggtgggggcatgtagtatggtccaaggtcaacatttt<font color="green"><u>AAAAAATAAGTTGAGATAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATGCAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCGACTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAAATAAGTTGAGATAG</u></font>aaatgatggttctctttcaaacaaaacaaacaaaaaaagctttgaggcagacaggactgaggccagaatagaaccaa<br>gagggaattactcctgtgagaggggaatattccaaagatgttccgatcagctaaaggcagagtttttaaaagcagagcatctgctggcttgagtgaatat<br>caataactggttgaataactggtctggttgagtgaatttccgtaatcatgtgactggaggggtttgcctggagggttggagagagcagatgccagcaacc<br>atggaggggagagtggggaccttgggatgtgcactcctccgggggttcaccaccatcatgacggctttgagttctgttcttgggcttggggatcaaaggg<br>aaga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TBC1D22B:NM:017772:12/13	
0	chr6	44721477	44721778	1000658	0	+	pAlu6-44614813; 238284; RIP_Alu_chr6_044_01	GCTTAACACAACCCATAAATGGCTG	AAATCCTCGTGAGCTGACTGTTTCC	SINE	Alu	Ya5	agtgcaaacgccaagatgctggataggacattcagagtgtcccaagagactgagggctgcttcttttgcagaggagtctttcccttcacaaccagatttg<br>tgtcaacggtgagcgggccctctgcagtccatttagaaaattactcatacggtcctctttgtcctctttccattccttgtgtcctgacaactcttcacga<br>cccccagttattctttggaaatgtttcttggatctctcctggtctttttcttcatctgcaatgtgaggataatgatgataacacctttgcaggtgcttaa<br>cacaacccataaatggctgagctgagcttcagtccatgctttgggtccccagactgtgctacttccaaaaccaggcttgtctcctc<font color="green"><u>AAAAAGACAGTTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAAGACAGTTGC</u></font>tccttgagggtagggactgtgtctgccatgtcccctgtagcccctggcatagcctgctgttggaaacagtcagctcacgaggat<br>tttcctcatgcctgttcatggtggcttcagcctctctcgcctggcatagaaacccaagggtctccctgctccttctcccaacaggactgctgggcagagg<br>aagacccccttagttggaggtagccaggctgggttccctcctgtgcttgagagtgtgctcccattgacatgtccaccactgtggtttctaggagctgctc<br>tgtggatagtgtatgtgtatcccagcctcttctccatctttctcacccctcctcctcttcctctttgatagtctgagttccaggtccacatgtggttcat<br>tt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	508	206	NA	intergenic
0	chr6	47886200	47886201	1000659	0	+	14170; RIP_Alu_chr6_047_01	NA	NA	SINE	Alu	Yb8	cagctcggttcactggttcctattagccgtttatacgaaatatagcaattgctctgctggaggaggacagggctatttcttttctctagagggtcagctt<br>tcggggaaaaagcaggcggtagagctgaagcagtgaggagcccttaggtgctagaggttgaagcctctttgtggaaggaatgctgaagagatattgagtc<br>gtagattttagaaggggctgcttcagagaagagcagacgggtggatggtagccaccagaggtttctttttatctttacaaagaagccaaaaagaaacctc<br>atttctctttgttgttattaagaagttatgcaagtgagtaatgtgcaggtctgcagagcaaggttaagtgatgtgaagctagttta<font color="green"><u>AGAATTATTGCACA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAATTATTGCACA</u></font>attaaactggattaatcaatatccttattcttttcttttctgagccctgaaatgtttttgcttataag<br>gggacaccctcttgggaaatattttgaaatcaaataataaagctaatgtattgaatatgggattgtggaaataaattttgggtaattttaacagtctatt<br>acaagttaaactcattttttcctcctgaattgaatcctctgagattttggtagaagttggtgaaccaaaggaaacaaatgtggccaagagctctttctgg<br>aatgttattctttcctacacctgggtatccagatgtagtctcccatattttgtaaacagcactgctccaccctggctgtgtaatggagacacctggggaa<br>ttttgaaaaatgactgct	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:OPN5:NM:001030051:5/7	
0	chr6	50873931	50874226	1000660	0	+	7113; RIP_Alu_chr6_050_02	NA	NA	SINE	Alu	Y	atgaataagcatgtcctgacatggtcagcctcctccaatgataagaagccttccctttatagacctagcaaaatcctaaagtcttggaagaaggggagaa<br>acgtatgtatgctctgaagaaacctgtcatcaccacaccactggatcctccatctctacctatttgggaagaccctaaaagtaaagcaaaacttttgatt<br>caactttcctctttcaggccaaagaagaatagcttggtcttcaatcatggtcattccataaagcagtccaaactcggaagactgggaaaatacaattaat<br>atacttttgatacctaaatgtagtaggtggctggagaaactatcttactgtgttaagactctcagagtaatgtcgtcaatgagtt<font color="green"><u>AAGAATAGGTTTAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAGA<br>ATAGGTTTAAC</u></font>aggaaatccaaaatcaaaatggcttgcatgagaaaaagtttatttctctcttatataaaagaagtacagaagcaggcagtccagggttg<br>gtgtagtgacttcactcatcagtagtccaggcctctttctgtccttcagctccactatctgaacacaagcttccatctttaagtttcaatacatggcatc<br>gtcatgcctacactgcagacaagaggaatgagaaagagacaaagaactaaatgtacccgtctcagatgagttgctccctttgaacagccttcctagagcc<br>tcacaccacattgcacttacagttcactggttatgtgaccatatgaccatcagaggctggaaaagacaatctttcagcaagttttattcctagtaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr6	51364260	51364561	1000661	0	+	Yc1RG65; 4148; RIP_Alu_chr6_051_02	GAAAATCTTTGGACTGGATCTCAA	TTCTAGAAACAAATGCAGCTATGC	SINE	Alu	Yc1	acctttctcagagacatttgccttgttagaaaatattatctttatgaaaagtaattatataatagtgatgcttcatacacattaggggaaataatttttg<br>atgaggaacttccaatgtctctcaaattttgttgccatatattggtcttgttctggttctttcattagttgcatttagtatttttcagctacttgtatgg<br>tcaaatcatcattattctgagtgagtagaaaatctttggactggatctcaaaacaggatttttcttgtggtattaagttcctattgttgtcataataatt<br>accacaaacttagtatctcaaaacaacaccaatagattatgttacagttctgtaggtcagaagttcaacattgttgtcactaggct<font color="green"><u>AAAATTAAGGTGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAATTAAGGTGTC</u></font>agcatagctgcatttgtttctagaacttctagaaaaggatccattctcttgacttttccatcttctaggggccacccacattct<br>ctggcttatagactctttccttcattttcaaagccagcaatatgcatatctctgaccttacttctggagtgacatcttcctctgaacatagctaggaaat<br>aatctctgctgttaaggattcatgtaatcgtattggactgacccagataaccctggatacctcctcatctcaaggtctctattcttaattagatctacaa<br>agtttctgtgccatgtaaagttatatgttcacaggttccagggcatagacatctttaagggctgttattctttctaccatactcattataccataaaata<br>tt	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	57	514	198	NA	intergenic
0	chr6	54664409	54664729	1000662	0	+	52977; pAlu6-54557746; RIP_Alu_chr6_054_01	NA	NA	SINE	Alu	Ya5	caaattgttgggattataggagtgagccaccacacacccagctgggatgtgtttttgaaggacaatttaatctaaatctgtactgttcaatatagaagca<br>actagccacatgtggctattgagcacttgaaatgggcctattctaaattgagatggactacatgtataaaatatacatggcttactgagaagaaaaaatg<br>ttatatatctcaataataattttatattaatcacatgttgacaaatgtaacatgatgaaatgctattctggatatattggtctaaataagcattaatttt<br>tttaactttttaaatatggtcacaaaaaatgtaaaattacatatgtggctcatattatatttctattggacagtgttagtctgaat<font color="green"><u>AAAAGAATGTCCCA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAATGTCCCA</u></font>aaatacattcaaatatgaaatcattaaaatcaatatgcttaagtctcctccaccccaaaatctaa<br>caatgttttctgatacgtctaattctacagatagtggctcctgtgtcaaaactcaggttttcattgggtatttagaatgaaatgtctggaataacaattt<br>gcttcctgaggaaattttatagaagccatttgctagaataaataggcttaatctttccccttcaatagcctacaagagttcccagcatactcagtgtatg<br>ggttgttctaataacctcttcccatcatcccattgccttccaaatgtgctaaggatatataaagcagaatcaagttcattcgtgtacattaatttgaatg<br>tttctatgtaccatgtgctgc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	54972338	54972649	1000663	0	+	14392; RIP_Alu_chr6_054_02	NA	NA	SINE	Alu	Ya5	tattacacaaaattttattaaatgatacatagggtgttttctttttgcattattctttctggtttctaattccatggttaataaagtgtcatggcattgc<br>aaatgagacatgtctaagataaatttggcagctggccatatgatttgtatcttggggcctaggcaggcggggtttttgtatagatcttctgagttgccat<br>ataggcaaacccatattactccaagggtgcctgaaaactagttctattttgttactatgaagtaattgactcctacatgtgactctgaaaagggaaatga<br>ttatttgctatttcagtgagcccattgtagcgcttaatacaacctttctgtctaagtcgtttccttggttttatatttcattcct<font color="green"><u>AAGAAAACACAAGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACCCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAATGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAAAACACAAGTT</u></font>atctaagcatactttacaatgaataaccaagaacagaggaaaggccatggcaggtagaataaataaaaagaaa<br>agtttattcatatattttttacttatcatttgaatttggaacatgacttttttaaaaacaaacaaacaaaaaaccctactttactttcttagtccacttg<br>ggctgctgtaacaaaataccataggtggagtagctaacaaacaggcatttatttctcacagttctggaggctgaggagttcaagatcaaggtgtctacag<br>atttggctcttgataatgatcctcttcctagcttgcagacagccaccttctcactatgtactcacatgactgttcctcagtgcatgctcatggaaagaga<br>gagagagagaga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr6	76014520	76014823	1000664	0	-	pAlu6-75907854; 11446; RIP_Alu_chr6_076_01	NA	NA	SINE	Alu	Ya5	gtattacaaagtgttacattcatagtaggtaaccggtaattattgttcaatggggaatgactcatgttcatgttgatgaaaagagtcaaactctataaaa<br>tattttaagagatttattctgagccaaatatgagtgacacagccctcaggagatcctgggaacatgtgcccaaggtggttgggatacagcttggttttat<br>atatttttgggaggcatgagacatcaatcaaatacatttaagaaatacattggtttggttcagaaaggcgggacaactcaaagcgggggacttccaggct<br>ataggtaaatttaaacattttctggttgacaactgattgagtttatctgaagatctgggatcaatagaaaagaaatgtttaggtt<font color="green"><u>AAGATAAAGGATGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGATAAAGGATGTG</u></font>gagactaagttttattgtgcggaggaaactctcagcggactgcagagagagcaggttataaaatgtgtcttatcagactta<br>aaagagtgcctggctcttagttgattatctcctggatctggaaaggggaaaggagattctctatagaatgcggatttttcccacaagaaactttgtaggg<br>caatttcaagatatggcagagagacatgttttggggtaaaacattttgattttcttcctccttatgccagagtcacatgggaaagtaagtcataatatac<br>agggttaaataaaacccatctgatgagaatttgtggtttgtagggcaggactccccagaccctttagatatgaatttgggcaagataaaaaaaaaaatca<br>gaga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	86083085	86083388	1000665	0	+	10265; pAlu6-85976421; RIP_Alu_chr6_086_01	NA	NA	SINE	Alu	Ya4	ttgaagacatggagcagtgtgcttgcagttacactgctactgtgtggcaaagccagggctcttgtgcatcaccccacacttcattccacaggagttcatc<br>taattatcctcacgaattacaccatggaaagtcttcccttgcacacctcagccattctactaaaagcttctgagttataaatccaaaagggttgttcatt<br>tatatatcattagcttacattaattgagcgcttactatattatatgtctggtatgctcgtatttttcatgtattgtctcttctcattacaaggtgatatt<br>gtttgaatatatgtccccaccaaatctcacgttgaattgtaatctccaatgttggaggtgggacctggtgggagatgtttggatcataa<font color="green"><u>GGGTGGGTCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>GGGTGGGTCCC</u></font>tcatggatggcttgagccatcccttggtgataagtgagctctctctcagagttcacacaagatatggtggtttaaaagtgtgtgg<br>caccttcccccacaactatctctcccttgctcctgctgtcatcatgtgatgtgcctgctttcacaacaccttctaccatgactgtaagcttcctggggcc<br>tctctagaagttgagtagatgccagcatcatactccctatacagcctacagaaccatgggccaattaaatatcatttcttataaattactccgtctcagg<br>tttctatttatagcagtgcaataatggcctaatgcagaaaattggtaccaaggaatgggacattgctataaaaaaaaaacctgaaaatgtgaaagcagct<br>ttgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	92864732	92865041	1000666	0	-	pAlu6-92758067; 239078; RIP_Alu_chr6_092_01	NA	NA	SINE	Alu	Yi6	gtatagaagtgaaaaagagtagcatcaatagatttaatacaacaaatattttaaatgttaaactcaagttcagcatggttacttaaattttagtgctgat<br>ttaccaatgacgcagtccataagactacaagctctgtttttatctgaaatttggtatcatataaattactttcctcagagatttaaaaccaccttttgaa<br>tgttgttttgttcatagcacaccttgactctttagcattttgaagatatgcgattgtgccttaagcaaaacctgctcttgattctttgataaattgattc<br>aggccccagtgggcgcggtgactcacgcctgtaatcccagcactttgggaggccaaggtgggtggatcacaaggtcagaagatt<font color="green"><u>AAGACTATCCTGGCTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAG<br>AAAAAAAAAA</font><font color="green"><u>AAGACTATCCTGGCTA</u></font>acaaagtgaaaccccatctttaccaaaaataccaaaaattagctgggcatgctggcacatccctgtaatcccag<br>ctacacaggaggctgaggcaggagaatcgattgaagccgggaggcggaggttgcagtgagcccagatcacaccactccactctagcctgggcgacacagc<br>aagacactgtctcaaatatatatatatatatatatatataaatttaatttaaaaagataaattgatttatcaggttaaatctttttttaaattgaaaagg<br>gttgtcttgcttgttctgtttttcattaaagtaatcagtctatctatcagcccagaaatcagaaatcgatttggttacattatcttggtttccattgact<br>cagggctgag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	93581275	93581473	1000667	0	+	Yi6AH116; 6416; RIP_Alu_chr6_093_01	TGTGCACAATTAATGGGATA	TGCCTTACTGTTGTTGAAAA	SINE	Alu	Yi6	ctcagcctcccaagtagcggaaactacaggcacgtgccaccatgcctgactaattttttgtagtttttgtagaaacgggtttctgccatgttggtcaggc<br>tggtctcgaactcctggactcaagtgatccacccaccttggcctcccaggggtctgggattgcaggcatgagccaccacacccagtcataaaatcacatc<br>ttaaagtatttggaattggaaaccctcttagaattgatgtgcacaattaatgggatagggttctttttttctgaaaaattattattaaataagcagtgta<br>cccttcgattaatgcttttttaggatcgtgcaataaaaatgttttaaaataatacataaataagaaaaaatcacttataatatc<font color="green"><u>AAAACATAAATGACTA<br></u></font><font color="red">AACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCTGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAACATAAATGACTA</u></font>gaaaatgagacagctttttcaacaacagtaaggcattattgaaaataatttttcattttgcaacatacaatgaatgtagaacata<br>aaagttatgtattatagaaattcacaatttcaaaacatattgctataatgaaagttctctaatacggtgaaaaggcttatttctcatataatatagggag<br>aaaaaattctggtattcaatttaaactatgaccccaataaaggaatcactaagagagaatgttgtcccaatttagtaagacaataaagagaatgagtgcc<br>acaaaatattgaaatagtatgattaatctctaagaaagagatttagaggtactataccctctcattgctcagatttcttttgtcctataactcatgaat	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	413	198	NA	intergenic
0	chr6	107035539	107035841	1000668	0	-	pAlu6-106928873; 31794; RIP_Alu_chr6_107_01	NA	NA	SINE	Alu	Ya5	ctttgtttgacccccaacaggaagcctgccgatcaatgagagagaactggttgatgcagtccatctaggacacagtaggatgcagaagggtggagaggga<br>cggaagaacaaacagagggtctccaggagagaaggtaaagatatcgagagggcttctccctctctttcagagagaggagatgcagatgagattagggaaa<br>ggaagggctgagacctcagtcaccatgaagaccagcatggggtggcaagtgtaccttatctacctctcatgatttaattctatggctggtaaggtttggt<br>agttgttctctttataaatttagtttgtcagaatgacagtaagctaaactttcacctccattggagcagccaattttttcttttctt<font color="green"><u>AAGACAGAGTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGACAGAGTCTC</u></font>actctgtcacccaggctggagtgcagtggcatgatctcagctcactgcaacctccgcctcccaggttcaagcgcttctcatgtc<br>tcagccttccaagcagctggattacaggcatgcaccacccttcctggctaagttttgtgcttttagtagagacagggctttgtcatgttggccaggctgg<br>tctcaaactactggcctcaagtgatccacccgcctcagcctcccaacatgctgggattataggcgtgagctaccatgcagaggtgccaaatttttttttt<br>tctttttgagatggagtcttgctctgtcacccaggctggagtgcagtggtgcgatctcagctcactgcaacctccgcctcccgggttcaagtgattctcc<br>tgc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	112310561	112310861	1000669	0	+	Yc1RG303; 19328; RIP_Alu_chr6_112_01	GCAGCCAGAAGAGATCTCAAATA	TCAGTTTTGCGTCTGTATGAA	SINE	Alu	Yc1	gtagtgagttcaaaatgaactcacacagatatagtttataatatataatctatgtttatgtatgtatttatctctatataaatatatgtatatttttaca<br>tagatgtatcttgtatatatatatgtgaaaatacctgggactggctgtctgaaccaaaaagagcagaaatagttacttgggatgtgtgaatttggcaagt<br>acaggtatagaaactcaaatctctgttacatattggaggtttaatttttctagcttgcaaatcaaggtcaaccacccaatggcagccagaagagatctca<br>aatagacataaattattcatgagcttacagaagttaaactcattttaccccaagagaatcaaatttactaagaatggtctgtt<font color="green"><u>AAAAAATCAGAAAATAT<br></u></font><font color="red">CCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAA<br>AATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTG<br>CAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCAGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAC<br>A</font><font color="green"><u>AAAAAATCAGAAAATAT</u></font>ttcatacagacgcaaaactgaaatttatttcatcctgcatttcatttatcatttatttcaatgaattggctttggataagcc<br>ataggcattccccaaattctttctgtctgtctttcaataaaaagaggaacattcaatttctattcaaaactgaaattagacaaagacactcttttcacca<br>ctaatacttaacattgttctgaaaattctagtaaatgtagtaagacaaaaagaagaaaccataaatataaatgacaaagtggtgacaaaattctatcaat<br>tcctgttaatgtaattatctacctggaaagaccacgagaatcaattgaaacactattaaaactaataaatgaattcactatggagccagttgccaaagat<br>c	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	63	458	140	NA	intergenic
0	chr6	116857523	116857825	1000670	0	+	30968; RIP_Alu_chr6_116_01	GTCTTGAACAAGTCAGCGTTTCTG	GAAAAGGCAGCACAGTGGGGCTGAG	SINE	Alu	Yi6	ttgcccccattagtcaggagccaagtcttagcctgggacctatatttaggcccagagctggttagatctgggcctctggaagccccacacctgccacata<br>gtaggccatggtagcgtggtcaacatgtttgtggaagtaaagcaatgtggctacacccacaccaggaggcattgggcttaattttattctcaagggttgc<br>gtgttttaaaggaaaaccttaaatctaaagacctaggttgagattaaagttgtgttcatttttagtcatgtgccagaggtcttgaacaagtcagcgtttc<br>tgttttggggcaatgatacataattgggttgttaaaaggattaactaagattctgttcagtgctgtgtaagttataaatgttat<font color="green"><u>AGAAATATGAGGAGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGTCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AGAAATATGAGGAGTT</u></font>gttattgtcaactaagtgcaacagttctagaaagctagcatttctgagttaaaaggttttataacttgttatagacttaat<br>tttcagtggggagattaaaatgtgacagatggaagaattgcttggacaaaatcatgtagctcattttttggcagattcaggattcctagttgatttttca<br>ttattagtttgcctttccagtggtttctcagccccactgtgctgccttttcagatcctgtggaaaagcacataaaggataagaggttaccttctaatgac<br>aatacaaattgaagactgtccgtttagcgtttataatatgtgcagcctattacaaattctataaaataatgatgcaagtttcacaaagagataaactttt<br>aaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:DSE:NM:001080976:3/6
0	chr6	119459219	119459530	1000671	0	+	Yb8NBC441; 3192; pAlu6-119352555; RIP_Alu_chr6_119_02	TAACGTGGTACTGCTTTGAAAGGAG	TTTATCCAGAGTGCTATCACTCCC	SINE	Alu	Yb8	gtgggttcctctttcacagtgggttcttttctgactttggactttggcaagattcttctttgtatttgagcctatctcattccacctctcctcaaagcaa<br>ctcatgtcatttgaaaagaattctttaggccatcgattaaaaaaatcacccctttgaggtggtgacattgggtaccaggggaaaaagggtacctactgtg<br>tattctgataagtggcttgaaaacagcctcctcctcagcttgctgtctttattgcctcatctctcatgacacttgttttcttcactgctcctggcatgtc<br>ttcaggttattgacttctgggatttgcagattttgtaacgtggtactgctttgaaaggagtactttacactgctttggaagaac<font color="green"><u>AGAAAGAAAGAAAAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AGAAAGAAAGAAAAGG</u></font>ttaatgctaaggactgttattagtattggtattggtctaggctgagattcagtatgggagtgatagcactct<br>ggataaatgcttgaacacacttttgtctctcctacctcctgacaccaattacttccccacccccactcctcccgacttgcttctctcaggtccaggcctg<br>tccttgacgtcagaaggcatgggctggtctccaggaagcccgtccaagctcagaacttagagacaaagcaaagcattctgcacagtcctgcttgacattt<br>cctctcttttctcatttgaagattttattgtgttaccctggtgatgagaaatgtagttaagaaagaggaattcccagagtagaaagtatgggggccagaa<br>gaggcaataaga	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	472	161	NA	intron:FAM184A:NM:001100411:1/17
0	chr6	120936160	120936161	1000672	0	+	14455; RIP_Alu_chr6_120_01	NA	NA	SINE	Alu	Ya5a2	cactagggagcccagttccataaatgcaacctctgtcattaaccctaatatataagaacagctcacactggacatctttgcaatgaccatgccctcacca<br>tcaaagtcttcttataactttagtgaaggtagtatccgctgagccttattagagaaaaaagacaactgagagaggagattgaggttattgggtctttcat<br>aactgattcttctagattactcacctctcttatgccacctttatatcctctccacaacactctgatagggcatttctggcacaactccttcacttaatat<br>aagccatcagtttttccaagctttgaaaagtctaatagcatattatgactagatcaataatttcaatcatagagttggtggttat<font color="green"><u>AAAAAGGGCTAAATT<br></u></font><font color="red">AAATTTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAG<br>CCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGGGCTAAATT</u></font>acagcctcagc<br>aagtcttccatgcaaaagtcacagggaataagtaggactctgagacttgaaatagaatgaatctggatagattcactgaagaacattgagccctcttgat<br>gggctagaataactggctgtaggatagcatcattcctattttgagaatcatgcaaaagactcaactgtggcagatgccttgcaagctgataattcccttt<br>ctcaagagctggcatctgctcctcctggctattaatctaataactaggtaaagttttgcaaaagtgagttggaaatgataggtcttgctaaaggaataaa<br>ggaattattgtttgaaagagctatatgtcctgatatgtgatagaaagaataagataatgtctgagaatggctct	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr6	123805123	123805420	1000673	0	+	4970; Yi6AH125; RIP_Alu_chr6_123_01	GCTGAATTCTGTCCATGACT	TCTACTCTGTTCCAGGCATT	SINE	Alu	Yi6	ttttattctaacactgtggccagaactgatgtattcctggttccagttaagtaaataagaacttgtttctttaataacaatgcattccaacatacctcat<br>cactgtcaccttgttttcttagagtggcagagattggcctggaacccagctcacaatatgaccatggaaaattttacataagctgaagataagttcaatt<br>acacgagtgattattagagttgtcccattgttatctacagaggggtgtggagcacgagagaaagcacaggtgctggcactgatgaccttgggctgaattc<br>tgtccatgactcttcctagttgtgtgaccttgggcaatgtgctatggcacaccgaatttcattttcctcatttgaaaagtggagctaataaaa<font color="green"><u>TCTACCT<br></u></font><font color="red">CACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGGGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTAC<br>TAAAAATACAAAAAAAAATTAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCTGGAGGCG<br>GAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAG</font><font color="green"><u>TC<br>TACCT</u></font>tgcttacttgtgagaaatggagataactgggctaaaatgcctggaacagagtagatgtagaaaaataatgataataatgacaagctattactata<br>ttttacaaataataaaaatctgaccacatataatctttttaggtaattttttaggtgtgacatttactgatctctttgagtaaatgcaactttattctta<br>tttttctatatccagggagggtatgtctagaatattttgtattaagaaactaaagggaaaaaaatacccataagcaagacagaaacatgttatgaagggt<br>actgtactgcaatgaagtggattcaagtctcaattttgctataattagtagtcattaccttatgcaactatagatgaatgttgtatcttctgtcttca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	469	164	NA	intron:TRDN:NM:006073:10/41
0	chr6	129031525	129031843	1000674	0	+	Yb8NBC278; 14379; RIP_Alu_chr6_129_02	CATTTCACAGTAGGGAAAGTTGG	TGTGGTCTGGAGGAAAGTAGG	SINE	Alu	Yb8	acactgggatattatgactattttggtagcttaaagaaaaataaattcataatactagatattaattatattcgatgatatacataatttataatactag<br>gatagaaaaaatctttattaattttcaagtagttacatcattctctcctcacttcttagcatgaaggccatttatgtactggcaggtaaatgtcaggttg<br>agaaggctctaagtcatttcacagtagggaaagttggtttttcaacttggaagcaaattttattttattatttttagaaaattatatatatatataactt<br>aaaatggaaaattgcacaaatcataagtggacagctccgtacattctcaccaagagaacatatcaatgtaatgaacacccaaatt<font color="green"><u>AAGAAACACTACATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCATGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACACTACATG</u></font>attagctccccaatatcctccattcggctactgtctagccaattccctaccaagggcaactgctac<br>actgacttctaacactgtaaagtagtcactggcagagattttgaaaggcagtatgtcctgctgaaatgtgagggaaattccactgatgattttaaaccta<br>aaacgatatgaatatctttagcaacaaaacctactttcctccagaccacataagaacccgcccatgcctatgtcctatttcctctggagcatttttaggt<br>taagttttagatcttgtagtctggtgatatagtacattttgacataacatggagtaaggatgccatgaggatgcccagctcatgtagggggtgcttggct<br>ggtctgtgatagtcactgg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	736	402	NA	intergenic
0	chr6	132739336	132739644	1000675	0	-	16327; RIP_Alu_chr6_132_01	NA	NA	SINE	Alu	Ya5	tcacaattgcaacccagttctcaaaataagaattttgacaaacctcaactttggcagaagaaaagtaacattttatgtgaaaaactgacatagctaattt<br>ctggagacagaaaaaaataaacaaaaataagcgtacccatcctatcccagcagtggccactacactgtagaagagtgaaaaaggatccagactctggggc<br>cagagtgccaaggtttgaatcctgcctttcggtttactagctgtaaatcctgggcaagtcgcttagcctctttgttctttgatgtcttcatctgtaaaat<br>ggaaaaatagttttatctgatagatgtgatttgaagattagtttagttaatacatgtaacaggtgtaaacagggcctggtgcatat<font color="green"><u>AAGAAGCTGTAGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAAGCTGTAGTT</u></font>attgttaccattgtcaagaaaggtgagttagactctgcattgccaacaatttggggttttaacatactaaagaaaat<br>ctagatgtggtaccctggatgggaaacatatgcacacttataattaccatacaaagatgcttggaataaaaatgccaaatgccatctatttgagtatgac<br>ttttatagacaatgggaggttttatcttatatattacattttctcagtcaaacatagctataaattcttcaaatacaattttactgttagcaaaagtaat<br>tataattatgtttcagcatgtatattctaaatcaactgtacaacttctcaaaaataaaatatcatcaggtactgaaaaaccagaaaggcagtaattaagg<br>caaattttg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:MOXD1:NM:015529:1/12	
0	chr6	133413195	133413524	1000676	0	-	Yb8AC1362; 16488; RIP_Alu_chr6_133_01	AGGCAAGACAGTGGAAGGTC	GCTCCATTGCCAATTTTTCT	SINE	Alu	Yb8	aacagaaggagccattcagttacattgaacaagtttttccagcatttacctctacccttagcactatgttacacttctgtggatattaaggaaaaaaaaa<br>gatataaaagacagatttgtaatcataagtaggaaaacaaggcttacattcataaactaataagaaaagagaaaacaattcaatcaagtgccaaaatttg<br>tgtatagacactaagtactgtagaggtcaaattttgcaatcttattatttactaggcaagacagtggaaggtctatgttcaagaaatatgatgggtgaga<br>aaatggtaatcatagcccatctaattaacatttgttccaggtaagacatctgaatcaatcattggaaattaaatgcttgattgttt<font color="green"><u>AAAGAAAAATTGGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATGGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAAAATTGGC</u></font>aatggagcaaaccttaccacaagattatttgccaaacagaacttagcattctttct<br>tttaacctctaatggaataggttgtgaagtgtcttttgctttttcccatgatctagctcaactttgagaaagattttgagatcgcaggtcagcttcttgt<br>tgaacccgactgagtacttaagcaattgttgaggttgagaattagatatcagatggtaaattaagactgggattttattgaaccacagcttccatgtatg<br>aggctatttctctcaccctttgagcaggggccaggccttgtcaagccatgagactctcttggaataagtgacaacaaaggtgcaagttagcagagaccag<br>ggacatataactggccatctgtagtccatg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	499	171	NA	intergenic
0	chr6	154488623	154488928	1000677	0	-	9719; pAlu6-154401955; RIP_Alu_chr6_154_01	CCTCTTGGACAGTGAAATCACAACC	ACTTACGCTCTTTCGCTTCAAATGC	SINE	Alu	Ya5	gacatttgaattttgcaaatattgggtagtgttgggacacttctgcccttcttgaaatgggggaatataattgttgttctccttcccagaatttctttgt<br>ctttgtcctcttggacagtgaaatcacaaccattaggtcacacaaatgtagtctcctctcccttctctctggtcttgttaattaaagcagttttgctgtg<br>cttaaattaatgaagctcactcatgttgttcagtgaatatggctatgttcaattttacccagactcttaggaaaagagttgtcttctttatttcctcttt<br>tttttttctcttctcctatatcttctgtggtttataccacttatctcatttccgtttggtattttgtaaccctgtgaatttatca<font color="green"><u>AAAAAATGTCTAGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGATCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGTACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAAATGTCTAGCC</u></font>ttagtgggcaatgcaaacttaaataaaacatttatgcatttgaagcgaaagagcgtaagtttaagagactttaaagcaa<br>atgggatgtgatagcctgttttcaacttttaggtcctttcaaaaatcaaattgcaaaggaagttgtaggtaatattggaaaccacctttctctggaaggt<br>tttttttgctaaacattcctattacagtgcatgtgacaatatgaagatgaattttccccactgtctcaaagggactctgtgctctctctctaaaacctaa<br>aacaaatacttatttttctttatgagtatacttatgctaagaatgtaatacttttagttggaacttaagcaagaaaactctgaatctaaacctgtgtaat<br>ggaaga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	675	362	NA	intron:OPRM1:NM:001008503:3/4
0	chr6	169786749	169787078	1000678	0	+	238980; RIP_Alu_chr6_169_02	NA	NA	SINE	Alu	Ya5	cacacgagtcacactgtagaaaagcctagttcatacgagtcacactgtagaaaatcctagttcacaggagtcacactgtcgaaaatcctagttcacagga<br>gtcacactgtagaaaagcctagttcacaggagtcacactgtagaaaagcctagttcacaggagtcacactgtagaaaagcctagttcacaggagtcacac<br>tgtggaaaaccctagttcacaggagtcacactgtcgaaaagcctagttcacaggagtcacactgtggaaaaccctagttcacaggagtcacactgtcgaa<br>aagcctagttcacaggagtcacactgtggaaaagcctagttcatatgagtcacactgtagaaaatcctagttcatacgagtcacactgt<font color="green"><u>AGAAAATCCTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAA<br>AAAAAAAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAATCCTA</u></font>gttcacacgagtcacgctgtagaaaagcctagttcgcaggagtcccactgtaggaaatc<br>ctagttcataggactcacactgtagaaaagcctaattcgtaggagtcacactgtagaaaagcctagttcacaggagtcacactatagaaaagcctagttc<br>acaggagtcacactgtagaaaatcctagttcgtatgagtctcactgtagaaaagcctagttcaccgggtcatactgtagaaaatcctagttcatacgagt<br>cacactgtagaaattcctagttcacacgagttacgctgtagaaaagcctagttcgcaggagtcccactgtagaaaagcctagttcacaggagtcacacta<br>cagaaaagcctagttcacaggagtcacgct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:WDR27:NM:182552:16/25	
0	chr7	4774282	4774588	1000679	0	-	11879; RIP_Alu_chr7_004_01	NA	NA	SINE	Alu	Yc1	gcagctggcacagacttggatgtgacagacaggcacggcgaggttcatcagtcagagacgaatcctcctcaccactctccccgctcctctctctctcgtg<br>gccttctgatttgcccggagagccttctcacccacctccaggaaaagccagcccaacttcacacacccaggtagcacccctgctcatggtgcatggcagg<br>cctagccctgggccctccaccctgcccaccttcccggagggggttgaaatgttccatccagcagcagagctgagggctgcagcctctgcctgaggaggag<br>ctgggacggggccggaaaagcccagcagagacagggtcccatgcccgtgggctcacaagacaacccaagactgaaactattttccct<font color="green"><u>AAAGAAGTCAGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAGAAGTCAGTG</u></font>aaatgggtctgtttttaaaatttcagtccagagggaaatgtgtgtggttgtatccccaaaatcccattcttctaagcagc<br>tgtgacttcggggtttgggtgacagggaggacagaggaaaggacgcagcagctctaatgggacaatcctttccacagattcaactccgacagaattcaag<br>ccgcacggtgtgggtaagggcccccttctcgaggcacggaccccactcgccaccctgcgaggggccgcggtacccaccgagatcccctgcaaagcacaga<br>ttccaaaccctccctctggtcaccaaacgtagcagcttttcgtatcaaaacccaaccaaaaaaacagtaagtatgtgatgaaaaccgtgtcctgagcact<br>gaaaaac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	exon:3UTR:FOXK1:NM_001037165	
0	chr7	7508853	7509136	1000680	0	-	7830; Yc1RG330; RIP_Alu_chr7_007_02	GCACAATTAGCATTACCGTTTTC	TCCTGGGTTTTAATCTTCATCTG	SINE	Alu	Yc1	tgtatatttattatgtataagtaaagttttaagtgctcatttaatactaataccaccttttgagacatgatctattcttatttccattgtacagattagt<br>ctactaaggcacaaagagtttaagcaatgggtccaagtctacagagctagtaagggacagactgagtattgaaacccacaagtctgctcttagctaccat<br>attatatttatccctttaggaaaaattgctgaatttcctgaatatttggcctgaaataaatgcatttctttttgacagtgtggaagttctatctgtcttc<br>ccttctggtggactctggctagggacaacagtttgttgaaaggtgcatttctcctgggttttaatcttcatctgaaagtgcagg<font color="green"><u>AAAAAGGAAGGGAATA<br></u></font><font color="red">TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTA<br>CTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGA<br>GCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGGAAGGGAATA<br></u></font>tcttgggagaaagaaaacggtaatgctaattgtgcattttcaaatactatatttcatataagaccttaaaatagaaacctttaaacttgcaacatttgca<br>aagattccacgagaggttctagatagggcctgcctatgtctatgaatttacaaatggtctttctcttgaattacgctcactttctgttgctttagggatt<br>ggcttttcttcattaaagggttttcagaaaaggtggccaaagaacaaaaggaaaaaaatgcatgtgttaagtcaggaaaaaatgtgctcctggcccattt<br>tcacaaattatttctgtcaataatactttccacatgtaaagtagctcctagtctgccctgaatgactttgttgccttagcaaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	384	84	NA	intron:COL28A1:NM:001037763:11/35
0	chr7	12025241	12025551	1000681	0	-	pAlu7-11768949; 20744; RIP_Alu_chr7_011_02	NA	NA	SINE	Alu	Ya5	taaactgcaggaattgagtatgtcagattttggtatacgtggagatcctacaaccaatccctacatacaccaagggatgactatagttacgtgtggataa<br>actccccttaataaaatgtcttatgttactaaattttgaagaattatgaagatagctatttttatatattccttttgtcatctaaatactccaaaattat<br>ttttagtttaaggcatccatttgctaaaggctaaaataagaattttgttcattgatttcctttaactaaaaaataaaaaataaactttgtttcttttctt<br>taggcaatgttttatttaaattataagagaaatgtgattaagtggttttattatttaataattgtaaaatggagttcaaatgtattt<font color="green"><u>AAAGTAGTATAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG<br>AATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAGTAGTATAGA</u></font>atcattattctatagacaatctcagtaatgagaaaccgtaaatattcttccttgaaaatatacaggcatgcctcag<br>accactgcataaagcaaatattgcaataaagtgagtcacacaaatttattggtttcccatatttacactacactatagtttattaagtatgttgtagcac<br>tatgtcctaaaaatgtacataccttaatttaaaaatattgctaaaaatgctaatattcatttgcacctccagtaaatagtaatcttttttgctggtggag<br>agtcttgacttaaggttgatagctgctgacgagggtggtggttgctgaaggttggcgcagctgtagcaatttcttaaaataagacaacaaagtttgctgc<br>atcagtggatt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	37803176	37803177	1000682	0	+	9775; pAlu7-37543417;1104685574181; RIP_Alu_chr7_037_01	NA;NA	NA;NA	SINE	Alu	Ye5	aaagctctttgacctgacatgtggacccatcaagagtatagaccccaaatcaagagtttcttcttccttctagtaatagttgtctgttttgtaccccacc<br>atgcattctgggtacactttattcaaaataattcagagagaaaagcttctaacttagttctttataatgaaatttatgttgctttaacgactgtctgttg<br>cctggatatgctgtgtttcttaagtggggttatacattaagcattcctatgtctcttccttcacagtattttcccacctttgtgataaaatgctttaact<br>gaatgagtgttactgtgatttcaaaatttttcatcttaatcatcatcagaattgttttttttcccaaaaaggtaatgaggattgatt<font color="green"><u>AGAGAGGGGAGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAG</font><font color="green"><u>AGAG<br>AGGGGAGCA</u></font>ccagttctatatttaccatacaatatgttcaatctcttagctctatataagctgactgcatcattttttccagacttaactaccttcatgc<br>agtacttaacttgagctaagcacaacaattggtttccctgtactctccagggaaatttgctcacagatttcacagaacaagataaatgtcagtgtactca<br>aattacattgtgagcaaaagttgtgacatttgctctctctttgagttctgaccctagaacattctttccctccatctccacctatcaattttttaagatc<br>cagagaacctggaaataggaacagtataaactgggctctagagaatacttaagttgacatagctgcttcttgaaaactactgattgtcagtaaagc	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr7	49522622	49522929	1000683	0	-	52662; RIP_Alu_chr7_049_01	NA	NA	SINE	Alu	Ya5	ccttaggaagtgtaggaaagaaaacacaaaattttgaggaagcaattgatgaaacatatgtgtcttgatcatttcttccttcactaaagtctgcttgggt<br>gttagagaccactgcacaagttacctctgaaccaaatcatggagggcaaatttttcagcaagagcggaggaatgggctttgatagcagaacctaagattc<br>atcatgatgtttatatctaaacttcctacaggccccaagccgtcatacggatggcggttgatcatctgccgaaagagccctatatccatgtacctatggt<br>agacaggattctatgataggacccctagcgagtcatgcctctgcatagtaccctgcccatgagtgtggatggagcctgaaatttgctttt<font color="green"><u>AGACAGTAGA<br></u></font><font color="red">GGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAA<br>ACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AGACAGTAGA</u></font>aggtggtaaaggtgatgagatagttactctcatgattatgttacattactaagactccatcttagcagattatagtgagggg<br>ttctcctgctggccttgaagaaataaggctccctgttttcagagtgcttataagaactaatgttgcaaggacctgagggcatcctatgaaagctgaaagt<br>agtccttagacaacagcaataaatggaggcttcagtcctactgtcacagggaactgaattttgtcaacaccatgtaagcttggaaggaaatccagagcta<br>cagaaggagcacagcctgaaccaccctttgaattcttgtgagatcctgagcttagaactcagttaagctgtgctcataattgtgacccacagaaactaca<br>tatgttgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr7	51659404	51659712	1000684	0	+	13499; RIP_Alu_chr7_051_01	NA	NA	SINE	Alu	Yb9	gttttctttaaaaaaaattcactgaaaagatactgaagagctccccaaactgagtagagttgaatgactcggccacacgaaggaaagacccttggcagcc<br>tggccaagcaatcacaaacaacctccactgaccttctgtgcctctccttccctggcttccaccagcatctactgggcaccaaccacatgccaggcataac<br>cgtgggatccaggctgccgatagggaactgtaaaatgccccgtcttcagagaggacaaatgccaggagatgggaagagctaagatggaggatgatcaggt<br>gagagtggagaggttacagcctcagcatgtggtctcctggaatggccaggaaggcttctctgatgaagtttaaactgagacctgat<font color="green"><u>AAGAGTGAGGAGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAGTGAGGAGCT</u></font>acaggagcagctgggaaaggagtgtccaggcctccagcaggactgaggttggcttgtatgtgtataagtatatacat<br>aagtgtgtgtgtgtataagtaaatatagatatatatttaaattccatatgtgtgtatatgtatgtgtgtaaacatacatatatatttaatataatatata<br>atataaatatatatatatatttagagagagagaagagaggactgtacatacccagtttttccttgatatctctggggaattggttccagggccctcaagg<br>gtaccaaacactggtgctcacatcccatattgctaatagagtagtatttacatataacctacattgtttaggaaatgatggcaataaaaaacatgtatgt<br>atttagtac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr7	52062468	52062769	1000685	0	+	Yc1NBC51; 6760; RIP_Alu_chr7_051_02	TCATACAAAAGACAGGCTTTGC	CAAGGGAACAGATTCAGAAGAAACA	SINE	Alu	Yc1	tcatcatcacattgcataagagataaatttatgtggttcccacttatcaatttcagtattcttaatgaattagtagacaaggtcgtctgctgatgaatga<br>aagccaagtgttgggtacaaggagaataatgaagttttgaaatggctgtaaaaaccaaaataaattctagcaggaatgggtaaatgaactgcagcataac<br>aatgaggtcacaacattcaattaagaacatattcaacattcaattaacattcaattaagagcatatagtgatacaaaccatatctttcaggttgatttga<br>ttctatacttttcatacaaaagacaggctttgcttttcttctgtatcagaaactcattctacaatatttgacaaattgtcttgaagact<font color="green"><u>AAAAAATGACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAATTACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAAATGACA</u></font>gaaaatttacttcaatatgtaaaaaaatggttaagtagttcttattttaaaaatccatatattgaggcaaaatacttgttttgttat<br>ttctgtctgtttcttctgaatctgttcccttgaactttatcactgaagatttttctatcagcctttttcaataaacagatcctgttgactcatgaacctg<br>tctcatcacctccgtggggcgggtagagccagctaaagttcagatatatgctttgtccatggaggaacaaatatattttgtctgtgcagtggctctttct<br>cttctgaaaagtatctaaactcagagtttattgccctaagtatccaaacatgcttattattcagtttctcatcttgttcaatttgtttaatggatagaac<br>at	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	521	208	NA	intergenic
0	chr7	79580027	79580344	1000686	0	-	21331; RIP_Alu_chr7_079_01	NA	NA	SINE	Alu	Yb8	agcattattgttaatgtggcatggccaattgatacgatagatttcttagctgcaacattgtgtttaccataatcctgactccaccaaaatttgtattcat<br>aatttcactgtaaaaatgaacctttaaaaactgtgtcttaatgtatctaaatgtaccttaaatgttgaacttttaaactgattttacattgatgtaatgt<br>tgtaaatgacagatgctcaccttctctaaaattttttattgatttgattttgattccatgaattgggtgggaaaatattctgaagcattattggattcaa<br>ctaacaaaatttcttatttgaagcatataattacacttatataaaactggcattggagctattttcttcacttttcatatgtgcat<font color="green"><u>AAAAATTGGGATTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTGGGATTG</u></font>aaaataaattatttagaagaacactcatttgttttaaatgaaaactcatgcttttcaaaatggaatgt<br>agcagctgcaggtattaaattgttgtctttggaaacattcttaaaataatgattgactttttttttttttttttttttgggaccgagtctcgctctgtta<br>cccaggctggagtgcagtggcacaatctcggctcactgcaagctctgcctccagggatcatgccattctcctgcctcagcctcccgagtagctgggacta<br>caggcgccctccaccaggctcggctaattatcttgtatttttagtagagacagggtttcaccgtgtgagccaggatgatctcgatctcctgacctcgtga<br>tccgcccgcttcagcctc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr7	86674566	86674859	1000687	0	+	7627; RIP_Alu_chr7_086_02	NA	NA	SINE	Alu	Yi6	atcttaccacttagggcctggcctatcaataggaacataatgtgcctcactgctgcagggcaggcatgcaatggcaccacagaagctgtggcctgatcct<br>gcagaccaacaggtcacggtctgccagccacaaaggtgcaacaccctaacagatacctcccaggctaggctctgttgttcccaaagaaatatcaatggta<br>aacaatggggatctctgaggtccacgttttcctgagtagaagcccagttactttctgctagggcaggaccaaggactgatttataaggcatcacagctct<br>gaactccagctgacaaatcaatccttcggcaatgctccccaacactcccagagaggggcaaggcaaaacagagaaaagtctttgc<font color="green"><u>AGAAAAGCAAAAGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGTTCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AGAAAA<br>GCAAAAGCC</u></font>tggatggacaatgccatgaagacattccctactacattcttgagggagaaggcagggtagagggtggaggaagattgagaactccattttt<br>ggtgttacttctaaactttctatgtgattctacaaaagtctttctcctcagacagcatcgcagggagtcctatagacccacatcccttaccaggtgctca<br>atccgatttccaggttagacctcacaccttcaagtgtcctcctctgtcagacatcctacccctgggaagctgttccacatgagcaaactgcatcctaaca<br>gagctcatgcccctgtgtactcagccagagctcatgagacttatttaccaccacgagaacagtatgggggaaaccaaccccatgattcaatcat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:C7orf23:NM:024315:1/4	
0	chr7	89436821	89437124	1000688	0	-	pAlu7-89197006; 8375; RIP_Alu_chr7_089_01	NA	NA	SINE	Alu	Ya4	ccaatttgcgtaatttttgcttgaggtgtctcttagtctgggtgcaggcatagagaaaataagagtttgtgaattgatcctgtactggcatttagttaag<br>aaaaactgatggaagaaaaacaaaagatgttttacagacactggcaagagagtggttgatatgggggaccacggagtctagggaaaatagaacaggaagt<br>gaaggctgaagattagagaggctccctttgaaaggattaaggactagtggtctcagaaaggtaaaagaataaatgctgtggacatagctatatgagagat<br>tctggaggaaagagtttgtgtgtggagaaatgaatgttttgattcaggaagtctatggtgggtcagtattgagtgagtgaaccagatt<font color="green"><u>AAGAATAAGGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAATAAGGTC</u></font>caggatgtggctgttggagttaagatgaagtttatgtcactggaactgaagatgttaagaaatgaagttactaaagtgattgac<br>taagaaatcctttccttgttagatccaccgagaatgatggcaatgcttgagacatagaggaagactgagatcttaagtctcaaatttttattgtataaga<br>gaaagttgccaggcagttaaaggatgcacagaattggagagaaaaatgatggtataatacaaagtgaaacaagtgacagcctggggtcaaaaactggatc<br>accagtgtcttttatttggcccgcactgtgttttaaaagttagattaaatgaccataatgaaaatatgtgagtttgcacacacacacacacacacacaca<br>caca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	90421882	90422175	1000689	0	-	15088; RIP_Alu_chr7_090_01	NA	NA	SINE	Alu	Ya5	agaaacttaaagaatccttaaattgtgaaacttctcagttttcttaattgttctaatgcgtattgtgaatctgcaagaggagagtataatactttcccca<br>aagaattgtcctaaaatttcttgtggtttcagtgttctgtcaaatactcactaggaaatgcttattgcagaagctcttttgaaaaaacatctaaataaat<br>aactataaaggaatagtcaaatctggtacatacattgatgagattatatatgataaattaaaatgtcctctaagaatttttttaaactgggaagatgtta<br>agtgaaaaggtatacgcaatttgacctcataaccataaatactcatgcacagaaaaaatatttgtaggtctgtttttttttccctct<font color="green"><u>AAAAAAAAAAAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAACCGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGATAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAAAA<br>AAAAAAG</u></font>aaaaaagtttggcagaaaatacatttaaatgtcttcagtggttacctctggaatatgggattatctttattttttagtaagtttttctgagtg<br>ttttcccaagatttgtggaatgaatgtgcaattattttaaaaatcacaaaatctatagatgtcattttttaaaagaaaaaaacctgtgtgacagctttct<br>atctagctgtattcattagtgacaagtataaagtattatttactgttatgtttatagcacttaaaacatttttacagtgaacctaccataacatattcat<br>tttaatgttctatttaaaaatttttatgtagtaaggaaatggctttttcttatttattaaatgtagcattccattttcagtattatatgtaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PFTK1:NM:012395:7/14	
0	chr7	95224205	95224520	1000690	0	-	79717; RIP_Alu_chr7_095_01	CAAGTTAAACTTCCCCTCGCACC	CATCTCTCTCTCCCCCTCCACTC	SINE	Alu	Ya4	ttttactaaaattttcttaccatatggactaaaagtcatagaagattaaatatcacaggctgtttaaaactgatgtcttttatcactttgatcttcttaa<br>tattcatcattttcaagttaaacttcccctcgcacctataaaaggctcatgttgatggagataaattgctgaactgttcaaatattttcttaacattcta<br>acttgtcaaatataaataaggtcatagagaatcatgttaaatcgggtgaattatcatcaagagtctaaaagtctttttttctttacagtaaaagaactat<br>aaataaaaatacatttgtgtattttgagaaaaatcatttctgaaacatttcaggtcaacaaattagtagaatccaagtttcgttc<font color="green"><u>AACAAATCCAATGAG<br></u></font><font color="red">CAGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA<br>AAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAGGCGGAGCTTGCAATGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAACA<br>AAAAAAAACAAAAAAA</font><font color="green"><u>AACAAATCCAATGAG</u></font>tatattttatattttatttctatgatagagtggagggggagagagagatggagagagagagagagagag<br>agagagagagaaagtgtcctgggaagaagttccaaataaacagaaaacaaacagaaaagggacaggtagtcaggaaactctaaaattagcataaatactg<br>atgaagcacctactatatgccagacaacagagatacagctttctagtactgctaagctcttcctggtgtattagagaccattatcgttatttcatggctg<br>atacagaggaaagctgaggctcagagaggttaagtgacttgctcaaaattgcacagattgtaataagtaaagccagaacctaactcagatgtttgataaa<br>agagctcaaatgcttc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr7	96360693	96361007	1000691	0	-	pAlu7-96120589; 238362; RIP_Alu_chr7_096_02	NA	NA	SINE	Alu	Ya5	gatgcttatatgattatatttgtaaaaagttgcattttctgccctaaataagcttgacaattatatgtcacaatgtctgctttgtactctttttactctg<br>ggtgatttagtgggagacctagaggcaggatggggtagtggagagctcaaggggtttagaggttgagtcagagcttagctccaaccccagctgtatggtc<br>tggggtcatttattttcattatttatgtattccttcacatctagggagcaatgggctctgaatatgtactggaattagagattgacaccctacccataca<br>gagcttttaggcggagagtcccctatctgagttctgtgggtaggataagggggtggaggagatcagggaatgctccccagaaggtgt<font color="green"><u>AAAGACTAGCGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAGACTAGCGCC</u></font>agaggctcatgtaggagttagccagtggaagggcgggggtgttgtggaaagagtgcagtagacagagataat<br>gccatatgtgaagacccagaggcgctggatctgcaaagactcattccagtggtctttcagcctcatatatatttgttttgagacaaagaaagatgtaggg<br>ttttgtctagaactagaatctttaaagacaaacttcagagatgagattaccaatggtatctgttatagttatcagtgggtctcattcaaattttctcttt<br>ttagcccaaagggttcctggtaatgtacaaggtggaaacctaaggctttatttcgagtaagaaggaggaacttcttaggttacatcagcactcttgaagc<br>tactgaggttgcaaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	102275957	102276279	1000692	0	+	8120; RIP_Alu_chr7_102_01	NA	NA	SINE	Alu	Y	attggttttagcctagaaatgtataatcacatagcatctctctatacacaatttgggtgtaataaatacatatacacattgacatatgtatatgatctaa<br>tatataccaaggtgtatacatatatttaatttacctacatatactagacatagatgtacctttacatatatttgcatgtaaacacacatatatgcacact<br>ttcactgcatacacacctgccagtccttctggtgcatcctaatgaaacctgattttctcctgctaatgacattagcacctggctgctaatgacatttctt<br>aatcaactacctcaacctgctaacactgaaataattagaaatttttgtctagctgcaagattttcatttagagataatctgcat<font color="green"><u>AAAAAATACACATTCG<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCAAGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATACACATTCG</u></font>tgtgtacggatattatataaatgtatttatattatgcttcattctaggaaagaggaatcag<br>aaatgcaaaccagattaagagtataaaaagcaaccagaggccaggcacggcgcctcacacccataattccagcagtttgggaggccaaggcaggtgcatc<br>acctgaggtgaggtcaggagttcgagaccagtctggccaacatggtgaagtcgcatttctactaaaaatacaaaaaattagccaggcatgatggtgcatg<br>cctgtaatcccagctactcgggaggctgaggcaggggaatcacttgaacccaggatgcggaggttgcagtgagtcgagatcgtgccattgcactccagct<br>tgggcaacaagagcgaaactcca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:FBXL13:NM:145032:17/20	
0	chr7	103250316	103250624	1000693	0	+	17827; pAlu7-103009708; Yb8AC1392; RIP_Alu_chr7_103_02	TCAAGCATTTTTCCACTCATGT	ACCTGTTTTTCAGGTGGCAG	SINE	Alu	Yb8	taaccttctaaattttttattagtctaaatagcattcaaaaaccataaatatctaatttaacaatagaaatattgttaaactctagcaagtttaaacctt<br>cataatatttagaagaggaatgtatgcaatgtcatttgaattagcaaagaaaaactaactgcaaatcaaaaattcaaattattgataaaattttgttaaa<br>ttaccaaattggtatttccagagcacctaagatactgtaatataaagctagctgtcaccagcacatgcctaaaggtagaaatggcagagtataaactcta<br>attctataacataatcttctggcatattcaagcatttttccactcatgtaagcatgtattcattcatctattcaacaaccaatgttt<font color="green"><u>AAAGAATTACTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGTTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAGAATTACTTT</u></font>gcctaaatattttcataatactacctgcaattgaaatactagaaatacgtactcagtattctgccacctgaaaaacag<br>gtttcaattttgtatgtttccttcagctttgtctacacgcaagttattttgttcttaggtaattgcccttttatccctaataattttttacttattttgt<br>ctgatattaatatagtaacagtagcttacctttggttagcacttgcctggtatgttttttccatctctgtactttcaatgtttttgtgccattatgttta<br>gttttatctcttagaaacagcatactgctgtatttttgtaattgcattctcaaagtcacagtgtttcgcctggtgaatttaatctgtttatatttattgt<br>aattgacaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	475	154	NA	intron:RELN:NM:173054:3/64
0	chr7	103916765	103917032	1000694	0	-	15419; RIP_Alu_chr7_103_03	NA	NA	SINE	Alu	Ya5a2	atcatccatgtacggttttcactgggccagttccctgtcctcacacttttcagtacctagagtggagtaacctttggttcattcccaccttcagactctg<br>gtttgatctcactcctggcaagggggatctgaaagggctgcaggtcagttctttggaccttgtgttccctttctggtagccagtacattaatttattaaa<br>taaatatttatggagacacactagatgatggggatgcaaaggaaagagggtattagagggtaggagctgaaatggaaagcataagtaagacttcattagg<br>ctctgtgctgagtaatgtacatcatctgcaagataatttgcaagacccagtgcaaaatgaaaatgcagagtcccttgttcaaaactt<font color="green"><u>AAGATTTCAGCAC<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAATGAGCCGAG<br>ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATTTCAGCAC</u></font>agtgagagtagagcagcaa<br>gatttcaaggcagtgagaataaagcagtaaaccaagtgggggtcccttctgagcatgggacactgagtgactacacgggtcacatgcccatgaagccagc<br>cctggtcatgcaaccccggttctctttgcctgaaatcctagacttccaagaactcaaaacctgctttctcttgccactttctactcattctcagtggcaa<br>aatctgaatccttcttagtgccaacagactttgcctgctttgaactttgctgtgtgctctggattctcaacatgctgcgtccttgtggctgtgattcctt<br>gaccctgcattcacacctcaactacgcttgcagtctgttgctatccgtctagatgctctacactgtct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:LHFPL3:NM:199000:1/3	
0	chr7	105253298	105253299	1000695	0	+	238047; RIP_Alu_chr7_105_01	NA	NA	SINE	Alu	Y	aaaaatttacctttcatgtaggatgcccctggaagattagtcctagcaaaagagggagtaaattgagcaggacgaagacaggcttccagtcagtggactt<br>cccaagacaatgaagagggaagctgttgtcacagaccagcagcacagtaggctgaggggctaatgggctccagaaaatacaggggaattgatgggtttat<br>tcagtatgtctgaccagctgggccaaaaatagtgacaggatatacccaatctagtggccaaaattaaggataaacatataggtaagaatgcaagtaaaaa<br>ccatgaggcaataattttaggacaagcaaaaacctacatacgagaggaagtggaattgccaatattgcctaatattggtagacaaagac<font color="green"><u>AAAAACATGCT<br></u></font><font color="red">AACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAA<br>CCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACA<br>TGCT</u></font>agacacaaggaaataaatactccttggctctgtaagtgaacagtatagatgcctctcactatccaaacacttagccttcatcttttagaagggaac<br>agatttggatacttttctggaatctgttcctcatcatttgaaattccactactcacatctgaaacccagaaaccaaataaatttggatgtacagtgtctc<br>tcattttctgagcttgttatctgacttagaaactggatagattcagatacttgatatttacaagcttgatgtaaccacataccttcactgagaatggaga<br>agccatagggaagggatggaggaaggaaagggggtggagatgtgtgacagccaaaccctccggtatgtgatggaaggttccgagatcctaaat	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ATXN7L1:NM:152749:2/4	
0	chr7	107471230	107471362	1000696	0	-	33005; RIP_Alu_chr7_107_03	NA	NA	SINE	Alu	Y	ataatgagaagagataataatcaccttgtaaaagattccttgcaaatgaatctatggtttatctagacttttatttagtttttagtgacagttttatttg<br>gtccagctaagtaattaaacatcaaagaacatgactttgttgagtatattgtcgagtattcttcattgtgtttttctcattccagatcgaaagtataagt<br>gaacaggcagaagtctccaaaaacaatgccttacagctgagggaaaaactgggaaatataagaaaccaaagtgactctgaagaagaaaacatcaatcttt<br>tcatcaaaaaagtgaaaaactttttgttaggtaatttaaaaatatatattaggactagtttttgtttttttccctttttaatgtatagtc<font color="green"><u>AAACATCATA<br></u></font><font color="red">CGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACATCATA</u></font>gccagttccaaattatattaattggaaatgacaagcctaaatcagaaaaatgatata<br>ccctttggtttttaattccttaatgagaataatctcaaaataccaactctgtgccaaaaaattacagctttctgtaaaagataaatgtggtaacaaatgc<br>tagaatttagttaaaattccaaacacatgaactttgtgtttaaagttattttatgttttttttaaggaaagttcaacatgacaattctatcagattccct<br>aacatcaggattcagtaattttctttgctgacagaaatgatatgagatcaagatatgctgaattttaattagatatcaaatatcatagggagttggcatc<br>taaaaaaaattattagctattattgactatttt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:LAMB4:NM:007356:29/34	
0	chr7	116629254	116629551	1000697	0	-	pAlu7-116382616; 912; RIP_Alu_chr7_116_01	NA	NA	SINE	Alu	Ya5	cagatggaaattagcaaagtcttaaaaagctcctgttagagtccaggtgatggggacaaaattgcggggtggaggaggagcttctccaggacttggcacc<br>tgactaaatgtgagagtgagggaaagaaccgaaggtgacaaatttttggcataagaaactagaataatgtgagctccttagctagggtaaagacaccaaa<br>ggaggaagaggcttagcaggggaaggtaacaaaaacagcttaaagaacctgcagaacatccctggagaaatggcctgaaggcagctgggtcttcaggtct<br>ggagcttaggagagaatctggagacacaaatgtgggtgttctgggccagagatggaagctgcgcagtaggagcacccgagatctctc<font color="green"><u>AAGATAGCTTCGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCTTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATCCCGCCACTGCACTCCAGCCTGGGCGTCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>GATAGCTTCGA</u></font>gcaaggagggagagggcagtgaatagagctccctggaaaacatgaacgcgtggcagcgcaggaaaggagtaggaggagagtgctgacat<br>acaggagtggcacagagagaaggtgtcatggagtcgagatggcctcaagacataagaagcaggctggctgggggcagtggctcacacctgtaatcccagc<br>actttgggaggccaaggcaggcaaatctcttcagcccaggagttcaagaccagcctgggcaacatggcaaaactaaggtggaggctgaggtgggaggatt<br>gcttgagcttgggaggtcgaggctgcagtgagccatgatagcaccactgcattccagcctgggtgacagagcaagaccctgtctcatggaaaaaaaaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ST7:NM:018412:11/15	
0	chr7	124380262	124380263	1000698	0	+	8196;1104685584793; RIP_Alu_chr7_124_01	NA;NA	NA;NA	SINE	Alu	Yb8	gtggacagagttctttccttccctgtgcatccgcttcatttgcgctcagagtaacattgcgagggagagttcctagatcactgaagccagacataatcag<br>acagaaatttctggcacaatctaccagcaattttttttccccactatctcctgaggccagctctgatgtcagaacatacatccgcatccaggcaagcaga<br>aataataaaaaatatgagaagctagcaaaataaaatcaccaaaatgtgaggaaaatatggtttattaacagaagtcatcaatttgacaagaagttaatcc<br>cagtattttagaaaataaacagaagactcttagatgaatataattagtatcttcagagtgagccaaaatattacaaaaatattagaaata<font color="green"><u>AAAGGGACTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTACGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAGGGACTT</u></font>agaatgttaaacaagtataaactaatgctgtgtaaaaatttatgtcaataaaattaaaggctaaatgaaatagataattttcta<br>ggaaaatataaattacctgtattggctctagagtaatagaaaataggaattaatgagaatagacacagtggaaaagacagtaaaagacctactctttaaa<br>aaatggaaccatgcagacatgcagttttaagctggaggaagaacaaaatctgcctactcctaacaaagaaaatgagaaatagaaatgggaattttatctt<br>agatgatattagcagcaataatttcagactttataaaggataccaagtccattaaatattggaccaatttgatagagaagacagaaagagatcatcaccc<br>actaca	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr7	128096463	128096765	1000699	0	-	238996; RIP_Alu_chr7_127_02	NA	NA	SINE	Alu	Ya5	cccagttggatgtatgaaaattggcacttctggctgggtgtggtggcttacacctttaatcccagtactttgggaggccaaggagggaggatcacgaggt<br>cacgagtttgaaaccagtctggccgatatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtggcatgcgcctgtattcccagct<br>actcaggaggctgtggcaaaagaaccatttgaacccgggaggcggaggttgcagtgagccaagattgtgccactgtactccagcctgggccacacagtga<br>atctctgtctaaaaaaaaaaaaagaaagaaagaaaaagaaaatcggcacttctttttccattccaggcatcagcgaggtaggtgt<font color="green"><u>AAGAGCTGGTGTTCA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTGGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGAGCTGGTGTTCA</u></font>acagtgaccctattgtttttgtggtgggggcctttgcctagagcaaggtcagtgtggaatatacagagaaggatggtgtcta<br>gcagcaactacctcctttctgctgccctcatctgtgcaaaacttatcacagcctttgaagaaatggtggggggtgccacttgacagtaataggacattat<br>tctgaagccagaagctgtagacatcatgtcccttgaggctattctgagctgactgctgaagatgaccttcctgcactgagattgtaggatttggggaaac<br>caaggctgtatatttgctattgtttatcccatactgttcttgcaaacaaaacaaaacaaaataaaaatttactgggacaccattgccatggtaccaactt<br>gtt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr7	137105825	137106118	1000700	0	-	11843; RIP_Alu_chr7_136_02	NA	NA	SINE	Alu	Ya5	tgtgatcctagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgaactgagattgcaccactgcactccagctta<br>agtgacagaggtgagatgccatctcaaaaaaaataaataaaaataaataaagaatgaatataattgcaaagataaaacgtaaacccagattgggaataag<br>aagcagaattataccaaaatggaagctgacgattacacagattcactccttatttactcattcaaagcttgcctcacataccataggtaaagtgggtaac<br>tctttctgatttttttggttcacttcaagactatatgatcttgaaattttaaataaataagctaaaaaggccctaaaatattttatt<font color="green"><u>AAAACCCACTGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAACC<br>CACTGAG</u></font>tataatttattgatttttataaaactaattctttttttttctgttttacttataagttttgggatatgtgtgtagaatgcgtaggtttgttac<br>ataggtatacatgtgccatggtggtttgctgcacctatcaacccgtcatctaggttttaagcccctcatgcattaggtatttgtcctaatgctctccctc<br>ccctgcctcccacccccagacaggccctgatgtgtgttgttcccctccctgtgtccatgtgttctcattgtttcactcccgcttatgagagagaacatgc<br>agtgtttggttttctgttcctgtgttagtttgctgagaatgatggcttccagcttcatccatgtccctgcaaaggacatttcatttttatggct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DGKI:NM:004717:1/34	
0	chr7	140760350	140760652	1000701	0	-	pAlu7-140444196; 3181; RIP_Alu_chr7_140_02	NA	NA	SINE	Alu	Yb3a2	gaagcagatgctactactaaatatataaatacacatttataataacttagtgtatttgtgggtatgtgagtatagatagggagagagatgctcagagaag<br>atggagatagatataagctagacaatagctttctatataaacatttacatctttctatctagcaaattagtttgagaaggaaaagtcatttgcagatact<br>ctctagtgaagtattaatttccaaatgttatcggctgaccaactatatccttttatgtaagaagcatattgcagacattaaatactctattgtgaagact<br>gaaaacgacctaaactattccaacaattggtatatggttatagaaattatggtatactcacattatgagctattacacagccat<font color="green"><u>AAAAATGATGTTTTTG<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAATCCGGCCTGGGCTAAACAGCGGGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAATGATGTTTTTG</u></font>gagaaattaagtaatgttggaaaaaactagacatgaaattgtatgttttatctgctcctggatacgtaattataatgatta<br>taaacactaatgataataataagcaagaaaaaaagaccaaaaggaaatataccaaaggttaatagtgggagaagagaattttcaatgattttttttattc<br>ctctttatcgttttctgtggtttctaaattccccacaataataagtatgtgttgctcttacatcaaagaggaaaatacttaaaacattatttaagaacaa<br>acacagaaacaaacaaatgtccttgagcttacataaggaatataaggataaaggaagttcaaacagctcttttcagcatcgtctgcgcagaagctgtcct<br>tcc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	152050347	152050648	1000702	0	-	2533; RIP_Alu_chr7_151_01	NA	NA	SINE	Alu	Ya5	ctcaaactccccacctcaggtgatccacccgtcttggcctcccaaagtgctgggattacaggtgtgaaccatcgtgcccgaccttgcccgaccgaatacg<br>tatatcctctctatgtatccactccatgctgtagccttggttcataccctcattctcctaccttagcttttgcaaatgttcctcctgaataatctcccaa<br>attccattctgtcttccgggggaaactgaaatctgatcatgttcatcacgtgaggatcactccaaagctcacacctgtgatcctaggtgctttgagaggc<br>cgagatgcggggatcacttgaagccagaagttcaagaccagcctgggcaacaaagccagaccccatctctacaaacaaatgaaaat<font color="green"><u>AAAAGTAGTGATCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTAAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAGTAGTGATCC</u></font>agttctccgtgacctgcctacatctccagcctcacctcttcagcagcctgagtgcgccttgcaatctaccaccgcaaaacgttg<br>ctttacatctttgctcctcccttttgaaatcctctccttgctaacattaccccctcccttggcctatcccagattctccgcctctatagtctgaatgttt<br>gtggctccccaaaatgtatgtgttgaaacctaatctccagtgtgatggtatttggaggaggggcctttgggaggtgattagggcatgagagtggagtctc<br>atgaatgggattagtgcccttagaaagaggcctcagaggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccggggtgggcagatca<br>cc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	2024423	2024461	1000703	0	-	6898; RIP_Alu_chr8_002_01	NA	NA	SINE	Alu	Sc	tcgcatttcaatttaaagttattaccatattgcagctacttgcagtagtgattaaatgacagcaatctaaatggctgtcaatacggtcagacacatgatg<br>atatgttcatagattaaaaacctcatggccatttaaattattgtataaagatctttagtctaataagaggaatgatgttattttgtgaaatctaatacag<br>aatgcaaattgtatgatacaacaagagcattaaagtctatggagaaaaagactataaatatatgtaccacacgttaatgtggctattttatatggtggaa<br>ttattgctcattttaattgcattccatgtaacttctctgtctttcccaaattttatatactgcttgtttaatttttatcttttgtaatta<font color="green"><u>AAAAACCTTG<br></u></font><font color="red">CTTGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAAACCTTG</u></font>attacatgttttattttattttttcacatagagataaaacgcctttttcga<br>aagtagttttgtggtagtaaaagttggatatacactgaccctggtaagcctgctgaaaatttcagatagcaacccagacttctagaaatcagactcatat<br>ttgaaggagttttctctcattttggtgaaagtgaaaagccgctattttgtatctgccccgggcgtttgtggtgggagcccccagggcgtcatgggcctga<br>ggtccttgcgaccccaagcgaccgcagtccaggtgtctataggagagcttcctctcctacatcagaatatgggtccacaaagggaaggcttatccactgc<br>tgggggaatgtcattagctcagtcactgtggaaagcagt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:MYOM2:NM:003970:14/37	
0	chr8	15431675	15431964	1000704	0	-	13355; RIP_Alu_chr8_015_02	NA	NA	SINE	Alu	Yb8	ataataatggtaccatgaagatgaaacaagtgaatacatgcgaagtctttagcatctaacacattataaatactacatattaactcccattatgatagta<br>gcttttctagaaatatttaaccaaatttcacacatcaacttatccactatgccagacactagggtaaacacaggagtaggggcaagaaagaaatgatagg<br>caaagtcctcatctgagaaaatgcacagatattcagtgtgtttcctttagagaagcaagcagatcagtgacttgtcaaactgtccttatagctgctgtgt<br>ggacaacagactaccagagagcaaagatgtaagcagagacttcagccccatattccaggtactgtatatgatgtaatacaggagtgt<font color="green"><u>AAAAAACTTTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAAG<br>CGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAACTTT<br>TTC</u></font>acagaattactatacatatggcaacctgtattctacagaagacattataagaggaaaatccctaaatgctccaataacacagtttgaaaaccaatgg<br>ctggaaatattaggcatttatatttaatcctagccatttttctaaacatattgatacgttagatagtacatctaagtaatgttagtatttttcaaacagt<br>tggctatttaaagcaaattttctataatgactgttttctaaaaatattctaaagtgaaactgattttgtatattacgatacatttcattcaattattttt<br>aaactgtatcttcagtgaaatttcaaattgctatgtctatgtaatcaacagtaattaaagtattgtaataatattgataaacctcaactt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	17006594	17006899	1000705	0	+	Yc1NBC69; 1815; RIP_Alu_chr8_017_01	CCCACATTTATCAGTACCTACA	CCTTGCAGAATAGCAATGAT	SINE	Alu	Yc1	ttctttgagaaatattgggtatccctattctgtttcttttattgaagctaacttttaaattgtgatttttttttaagcgtgctgatgacatcacaagttt<br>agtaacagatactacacttcttgtacacttttttggaaagaaaggaaaagctgagctcaactttgaagatttttataggtgagcttatttttatattttt<br>attaaaaattattagcctactgaaatcagaaggatctttagaaattgtctagtacagcaatactcacctctttgttactttaattttaaataagatcctc<br>tgtataataaatacccacatttatcagtacctacataccagtggttatattgataattataacaggaagttactgaattttttt<font color="green"><u>AAAAATTCCAGATATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAATTCCAGATATC</u></font>tggattgattgttatctcttgtatattcagaagaaagtatgttgccaattccttgtctcaataagctgcagtgatagt<br>aacaagtagtttaagtatcattgctattctgcaaggtacttttgttatccccatgttatagatgaggaaactaaacccctgaaaggctaggttatttgcc<br>ctgggtgctacagtcattaagtagtaaagcgatcgtgtgttcttttcattctcatttacagggaggaactttattaatctttgcatcatcatacaattat<br>ttccatataaccttttctaggacagtgagtatttgctcatctcctgttacgattactctttctttatctttttccttctttattacatttttgtcataga<br>ttcatg	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	524	210	NA	intron:EFHA2:NM:181723:10/15
0	chr8	17309987	17310296	1000706	0	+	pAlu8-17074912; 955; RIP_Alu_chr8_017_02	NA	NA	SINE	Alu	Yb8	agcaaacaatgtttagtgcacgcaaagaaaaaaaacaccagaagaaaatgtacccaaatattaaaagtggctaatttctacatgtagtccatattacttt<br>tataaccagaaaattattatttgctaaaggaagataaaagaagagataacccttggagctgacagtatactgacagtgaatgatcaagagaaggcaaacc<br>tcatggatctgctgatgtccgtctatcacagacagaacttgaaaatgagatcactatttgcccacggtgaaaacagaattgtataattataagttgttga<br>gttcaacactaattctggcagggttctaaaatgagttatttaatggacctttgtatgaacctaaaaagtggaaaccatcaatcagc<font color="green"><u>AAGAACATCATGGA<br></u></font><font color="red">GAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGACCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCACCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCACAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAACATCATGGA</u></font>ttcaccgtcattatttcagaagacttcctttctttctttgatgagctctttggcgacgtgatgaaggacaaactta<br>tcaactgctagatgacatcaaactgagagaactactgaatctgctattaggatcaagatcctgagagatgggggcaagtggcttaagaagtcacttctgc<br>tcttggataagacaatgaatgaggtaacagaaagcaagctgattaaatagtggatggtaccaaactgacaggaacagcagatgtgtatcagcatccaaaa<br>aagagtaagagatgagcaaaagtctaaattcaatgagataatattcaacgtagagaagtataagatattatcatcaagcctaactactaatgggtaactt<br>gatgggcatc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MTMR7:NM:004686:1/14	
0	chr8	20024558	20024857	1000707	0	-	pAlu8-19789476; 18530; RIP_Alu_chr8_020_01	NA	NA	SINE	Alu	Ya5	tacggtcatcatgattattcattacgcacctatgatgtttcagttactttactagaaaaacaaagtcggataaaacctggctatgcctgcccagcaaccc<br>catataatagaggggctttgggaggtgggaggacttaagtatggtgggggcacaaagcgacctactcagccttcagccattcttaggggaaggggctgag<br>ggtagaagggagaaacttgtccagaggaggtgacatttgagctagaccttgaagcatagacaagagtagctttttctaaatgggagttgagcagtaaaga<br>cagggaggaatggtgggtgtattgagggaagataatggcagtggcagctgtaggcaggtctggcaaagcacagtcggattcctgt<font color="green"><u>AAAAAGAGGCTTACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAAGAGGCTTACA</u></font>cactagccaggaagcattcagacctgaacttacagtaagtaaggaggagtcagacagacttgcatttatgtcttaacgtggctgt<br>atttgctgtatttgttcttctaaaacatctctttgacagccatgtggaggttggggaaatattgtgagcaggaagaccagctaggagccttctacttaaa<br>agtgacctaaaagggggcatgagcagatctaatggaggcggcaggatgaattttaaaaggcagaatttataagactttgtggctgggctcagtggctcat<br>gcctgtaatcccagcactttgggaggccaagatgggtgaatcacttgaggtcaggagttccagaccagcctgactcacatggggaaaccccatctctact<br>	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	30511833	30512123	1000708	0	+	238531; pAlu8-30248390; RIP_Alu_chr8_030_01	NA	NA	SINE	Alu	Yb8	cttgtgaaggatactatacacgtaagcacaaaataaatacttgttctggtttctagggatacattaacataattttaaaataggatttcagtcgttgatg<br>tttttaacattccctgtggatagatcaagggcaagtagcccacggctagccagcatagatggggaaccagaagaacgggggtggtggagttgctgagttc<br>ctagagcaggagaaggccatgggtgagagtgggagctcagttcagacacacagcttcattctggaattcctcacgtggctcacagaagagtttgcttatg<br>tgtgtgtctagatttatgttatttgtgctatgaagtatattttggggttctgattcatcagtttcctaggtcagtggcaatctctt<font color="green"><u>AAAACTGATAACTA<br></u></font><font color="red">ACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAAAAAATACAAAAA<br>ATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCG<br>AGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTGAT<br>AACTA</u></font>tgacaagttagtagtttccaccttttttcgtcaaggactggaacctttgcagatttaagaaaactgacattttcttaaaagtcaaggaaatgtgc<br>taaactgtaaatcattgggtggattacataattctgaagtttatatcctcttgctagttttaagttagttgtaggcactttgtaatatcgttaattttaa<br>ctaacttttcttgaatatgttctgtgtgccagacatatgtgctaaggataggagataacagttttgtgaaggacatagacacagaaaaagaaaatttttc<br>gtataagcagtaggtgcagtgttcagggtacacatagcctgttttgggaggtgtaagaaaggatatctggtctttactggattttcaagag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RBPMS:NM:001008712:5/7	
0	chr8	41398502	41398808	1000709	0	+	pAlu8-41020191; 13335; RIP_Alu_chr8_041_01	NA	NA	SINE	Alu	Ye5	tgtaaccctaccatcatagcacaaagtcaaccatagataacacataaatgaatgagtgtgactgtgttcaataagactttactgacactgaaatttggat<br>ttcatataatttttatgtatcataaaatattacttggatacttttccaactgcttaaaaatgaaaaaaaaaattggcccatgggtcatataaagataggc<br>ggcaaaccaaattggctctcgggccatagcttgctgaccctcatacagaaaaatgaacactagatttagagaagtcccaggctggagaaccgctactttt<br>gcttgtacaatgtgagacactgggcgagtcaaatgagttcaaataaattcttagggccttgatttactgttaaagcattggatt<font color="green"><u>AGATTAACCTTAAAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAAGCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AGATTAACCTTAAAAG</u></font>ccccttcagccctaaaaactctctagtggcttctgtttccagtggcttctgtttccagtggcctctgcatatggcag<br>actggttgagcttttaaaaaattcctttcaatacaaaatacattaaaattctgggtaaaataaaatgtcgttcaaaaaaccctcactaaggccgggcatg<br>gtggctcatgcctgtaatctcagcactttgtgaggctgaggtgggtggatcacaaggccagaagttcaagaccagcctggccaacatgccaaagccccgt<br>ctctactaaaaataccaaaattagccaggcgtggtggtgggcacctgctactcgggaggctgaggcaggagaatcgcttgactctgggggacagaggttg<br>cagtgag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	42705067	42705395	1000710	0	+	238640; Yb8AC1413; RIP_Alu_chr8_042_02	CAGAATCTCTGTGGCTTCCTG	TGACCAAAATAGTTTTCTTCTGTGA	SINE	Alu	Yb8	tggaaatatgtaacatgcaaagtgtgtgggcctgggtgagatcagaggccaggctggctcaaggtgaatcctgtactgagtccccagtagggtcacgcag<br>tccaaccgggacaatttccttttcttaataaaacagtggcttggtaaagctaacagaaacttgaagatttcaagatctaatacattgaactttcggaata<br>aaatcacagtgtactaatttcatgcaggaatggacagaccacaagttacgctggaatcctgatgattatggtgggatccattccattaaagttccatcag<br>aatctctgtggcttcctgacatagttctctttgaaaagtaagtatcacattgtttcttacttatggggaaaaaaataaattttt<font color="green"><u>TAAAAAGTGAAAAAAA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAATAAATA<br>AATAAATAAATAAATAAATAAATAAAAAA</font><font color="green"><u>TAAAAAGTGAAAAAAA</u></font>ggaaagtaagtatcacagaagaaaactattttggtcagattaacactaggaatag<br>aaaattctgattcaggcaaaatacttaaaagaaatattcaattttaaataaaaaaattgtttattaaaacagttacctggcgttgtggtagaaaagtcct<br>aaaatagggcagggtgtggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcaattcatgaggtcaggagttcgggaccagcctggcc<br>aacatggcgaaaccctgtctctactaaaaatacaaaaacttagctgcgcatggtggccggtgcctgtaatcccagctactcaggaggctgaagcaggcaa<br>attgcttgaacccgggaggcggaggttgc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	481	140	NA	intron:CHRNB3:NM:000749:4/6
0	chr8	54367450	54367751	1000711	0	+	19086; RIP_Alu_chr8_054_01	NA	NA	SINE	Alu	Yg6	gtatctaggtcttgttctttcttctatctttagcgcttagcctagtatttcacgagtagtaagagctgggtctgtggaagagctaagtatgcacacagtg<br>ctatccattcccaggagagtccagtgcttagaaatatccctggggcccagggaaatgattatcttttctcctctaagatagaaaagatcttagaggagat<br>agaaaagatagtcttttctcctctaagaagaaaatttatttttatagatgcttccccttaccacaatacatcaaaaatagaaaagaagacataaaaatca<br>ttcaaggcaatattatcaaagaccataaagtaaaatattttcttaaagtaacaaatccttgatattttcttatgtcaggtttgact<font color="green"><u>AGAAAAGCAAAATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAGAA<br>AA</font><font color="green"><u>AGAAAAGCAAAATC</u></font>agctaaaacatgtctagacagtgccaagttctccctcaacttgctcttctgaccacaaatgatactttgggtgcttttatgcat<br>aaactctcgcctacattaatgtttgcagtgctctgtgttcataaagttgctgcccagaaaattatgagcaagaaaaatttgaaagtgtcctgaagagagt<br>gaagaatcacttgattttatgaacttgctctttgttgacagagtaaaataacacttaaagtatcattcaacctactctaccaaagtgcagtacagattta<br>aggaaattacatttaattcagacaaaaagaagagcttaacacaaatgattcaaaactcaatgatctatttggttcaaattcattatctactattagtttt<br>tt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	56563772	56564072	1000712	0	+	3422; RIP_Alu_chr8_056_01	NA	NA	SINE	Alu	Ya5	aagggatgtaaaatgatgcagccactttggaaaaactaaacatgctcttatcatatgatccaggaatcacattcctagatatttactcaagttagttaaa<br>aatgtaaactcctacaaaaatgtgcacacaaatgtttacaacaactttattcataattgccaaacctggaagcaactaggatgtcctttgatagataaat<br>agataaactgtggtacatccagacaatagaatattattcagcactaaaaagaaatgagctatcaagccacagaaagacttggaggaattttaaacgtatt<br>gtactaagtgacagaagccaatctgaaaagacttcatattgcggaatttcaactatatgatattctggaaaagaatggagagaat<font color="green"><u>AAAAAGACCAATGGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTTTCAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAGACCAATGGT</u></font>tgctggaggttagggggctgacaaggatgaatagatgggacacaaaagattctcagagcagtaaaaccactctgtatgatacta<br>caatggtggatacatggcattatacatttgtccaaacccataggatttacaacacgaagagtaaaccctaatgtaaacagtaggctttcgttaaaaataa<br>tgtattcatattggctcatcaatgtactgcatcggtaacaaatgcatcacaataattaatgcaagatgttaataataagggaaactggcagaataaggct<br>atggaaactccctgtactttctactcaattttcttataaacctaataccgctctaaaaaatagtctattaattttttaaagatgtaacttaatagtaacc<br>a	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:XKR4:NM:052898:2/3	
0	chr8	57129886	57130023	1000713	0	-	5183; RIP_Alu_chr8_057_01	NA	NA	SINE	Alu	Y?	aggcgggtagatcacctgaggtcaggagttcgagaccagcctggccaacgtggcgaaaccccatctctagcaaaaatacaataattaggtgggcatggtg<br>gtgcgtgcctataatcccagctacttgggaggctgaggcaggagaatctcttgaacccaggccggaggttgcagtgagcccagatcgcaccactgcactc<br>cagcctgggtgacaagaagaaaactctgtctcaaaaagaaaaaaaaaaaaagaagaagaaaatcaatgaatttgaacttagaaacaaaatgtatctgaaa<br>atgcaatgccttgaatttcttgtctcgctcctatctggtacagcattccctgaacacaagaagtttacattttttctttctgctt<font color="green"><u>AGAAATCAACCTGGG<br></u></font><font color="red">TACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCG<br>AGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATCAACCTGGG</u></font>gtgactgcttttgcagttaagtaggtggttaataaaaactaaatttt<br>tctctatttgaataactatgcgtatccctgataagacactcaggcaccttggtagccactgaaatgaattcaccatacatcaaactaatagaagcaagag<br>aaacaatctggcaaagaaatactcaatgaaataaattccaaacatctgtttccttttatatttattaatcattgcattctcacaatatttcagccaaagc<br>ctggggaaagtgagaactctacctatttaaataagttcaacaaaaagcccataataaaatatttagcataagacacagatctaaaaaatgaaaagacata<br>gatctaacaaaactgcaattaaagaactgtgcattgtt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	61689351	61689352	1000714	0	+	30856; pAlu8-61249965;1104685422571; RIP_Alu_chr8_061_02	NA;NA	NA;NA	SINE	Alu	Ya4	ataactgtaatgttcatagcattgacttttagcagttgagaagaaaagccacattttagctacctcatatttctcagttctaagagaaaactaaaagtcg<br>cttgtttacaagataccctgctctgtagcatctgttcaagatatttaaactgtccaaaatactggtcttacctaatttttatcatgccaccaggtggcag<br>catgttatgtaaggaagtaatttaaatattctattgaagatcatttattttcaatattttgccttaaaaactgcccaaccataataaaaaataaaatagt<br>atctcatgtttccctttgcctgcattctctccagtctattttaaagaccctgttagcacaatatccgtgagacctgccttaat<font color="green"><u>AGAAGAATGCAGGGCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AGAAGAATGCAGGGCTG</u></font>agtttttttcttccatctttatggagatttgagccattgggcttagattctgccaactaaatgattttattccta<br>cctaaatagttcctattgttcagcaacaatagtcctcctcatctttgtgtcttccatggtacctacagaagttctgaatatgtggcaacgatttttttct<br>taatagagacaggggtcttactacattgcccaggctggtctcaaactcctgacctcaagcagtcttcctgcctacgcctctttcagagtgctgggattac<br>aggtgcgagcctggccagtgacaatagttttaacaggtgcccttgggtaaatgtcagtgatatgtaagatccacattagcgtgtgtatttactgaatgtt<br>tatttgaa	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:RAB2A:NM:002865:6/8	
0	chr8	63092705	63093009	1000715	0	-	239003; RIP_Alu_chr8_063_01	NA	NA	SINE	Alu	Ya5	aaatctataaaagtatcccaaatacaatttctactaatttgcagttatgccttttgaagctgcctttgtgtgccagagtattctttcagtgacttttttt<br>ggagcgattttgaaggcaagagaaaaaaatatctactcagcactactcagaattcctttagttttattttcagtttctcaccatacagaatcccctccag<br>ctagagcagctgtaactaaaagtctgcttgatgctgcactggggttttgctttctcactctcctgtgcccacttaggtttaagatatggggctcaccatt<br>aaatgttttctgaattagtaactgagaatagattaaatgaggaaatgaaattattatgatgagagcatgggagagtggttaccataaacaac<font color="green"><u>AAGAATAT<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAATAT</u></font>atggacatgactccagcaaaagaaaagggaatatatagctgagattataacagtgagagatggcagaatatgaggtgcgtgttaaaa<br>atacgactgtcttgagatccataagatttggctctgagagttgtgggaatctctcaggcgcacattcttgacaataaacaattgatgtttctggtatttt<br>ttctttgttataaaatttactcagtcgacactatctctgggaagaatacataagaaatcgtctctgtttttggtatacaatctagtaagaagcctgtcaa<br>gtatacagacttacaatcagaaagacccaaaattgttttttaatctaacttgttcattttataaataaaaagactggagtataaagaggttcaacaagcc<br>catta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	72077134	72077135	1000716	0	+	16002; pAlu8-71637776; RIP_Alu_chr8_072_02	NA	NA	SINE	Alu	Yb8	tcagagaatacatgagatcagccttaaaaaggtagattagtttgggttccacttttatcatatatatatattggaaaatatctatcagaatgtttcatat<br>gtttaagtacaaatgatatgatgataataaatcaaatcttccaagtctttaattgaatactggctatcatgaggtcgtaagagaaattccactactgttt<br>tcaggccattgtgataccatataaggaattggctgtcattttagtaaatgtagttaattctatcatgtcctaataggctgggtcagtggtcaaattgttg<br>gagagattggggttgacgatagtctataaactacgaggaagggctcaccatatgtggtaagagttttgtttcaaataattttaatct<font color="green"><u>AAAATAAAAGCTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AATAAATAAATAAAATAAAAA</font><font color="green"><u>AAAATAAAAGCTA</u></font>agccgtggtaggtttttgttttttttccgaaataattccagttgtgtttatctatattatttttct<br>tttagtatgttctgtctctcaattaacagcatagtatattagctttccaattctgtttattgtatctttaagtaaatttaatttatataaaatagtctaa<br>aataaagggcaaaacacatacattcaacaggcaacttctgttttatacggtctccctttttactcttttttattgatactattgtaactacaataaaaac<br>acacttgcctttaaatatgccattcggtgaagcttcacaaccactacaagtcctagtgaaaatgctgaaactcatgctttgagaagtgaatgatgatcac<br>ctaagctgtaaaaaaactcag	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	76289458	76289767	1000717	0	-	79754; RIP_Alu_chr8_076_01	CTGACAGACACCTGAACTCATCC	CAGCATAGTCACTCCTGTGGAAGAAC	SINE	Alu	Ya5	ctgtgttggataggcctgagccagaattatgctgcaggtgaaaagagggaggcaaacttctcccttcatgtattattttgtaactgatttacatgtgatg<br>tgggatgttttctggtcagaaagtaattggacgtttccattactgatattcaggaatatacaaagaaggctaatgaaacgttaaatttaaaggagaaaca<br>atggatttctgagagaaaatgcaccacaaaccacagccaataatattttagcatattgcttgttaagtggtgggtctgacagacacctgaactcatcctg<br>accagacagctggttgatatttttgccatgtgagaaattgatggggtcaggtacaaaggcaacatgagtgcttcctccaatatgtt<font color="green"><u>GAAATATAGTTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>GAAATATAGTTTGA</u></font>atagacataatgcataacctgctggttcttccacaggagtgactatgctgatattcatcattaaagaggttcagaa<br>attatatatggtaattttaatttgtaccattgatgccaaagcacagtcatattactgcatagaaagaaaaataagactatttctctaattcttgctcagc<br>ttccataggaaacatgcacagagaagcaatcaagtagagtgtagtggggtaaaacagccctcagtttgagacagttttcctaattgataactgtgtgtga<br>ccttagacaagttatatatatttgctaagatatttcttattggtccagtgaggatcatatacctacatcataaatatgctgttaagacaatttctgccat<br>gtggtatatg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr8	91584607	91584859	1000718	0	+	238711; RIP_Alu_chr8_091_01	NA	NA	SINE	Alu	Yb8	tcacacataaacacacgcacaagtatagagcccagctgctctggttgaagtggaggggacccacagacttcctgctatcctacccaatccctaaaatgat<br>ccctgagacaccaccaggagttccagggttccacagaacacagtttgaaaactcccattgtaaggtaatttttaagaatgctaaagtaaatttaaattgt<br>atgactatcagacaaaagctggggaaataactaatggatcaattcaaatggtttcaaaatacaatcatgtcaagataacctctttatttcctgtcagaca<br>ggcatcatgctagtcctcatatctttgtaatcccaggaacatcagactctaaggagcggccatcccatatgtcacctcatgctt<font color="green"><u>GAGATACGGTGTTGGG<br></u></font><font color="red">GGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCC<br>AGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCTCCGGCCT<br>GGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAGATACGGTGTTGGG</u></font>gagctaactgttcagttacttcacttcctct<br>agctccatagttctcaacccttgctacacataaagtaattgatgaactttaaaaatatatatacacatatacaggtcacacccacgaacaaatgattcag<br>tcagactctggggactgagcctgcctggccctgtttcgagaacccatcctcaggtgatatttatgtgaaaccagagtacagagccaccaagaagaactcc<br>taatttcctttttctgttttcaaaagaatatatatctagttgaattttgactcctcaaagttgttttcctctaaccatgcattacacagggacccacagc<br>ctatcagacattatgccacacctaaaatgaattaactcctataaagtaaaaac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	95863898	95863899	1000719	0	+	18601; RIP_Alu_chr8_095_01	NA	NA	SINE	Alu	Ye5	tttgctacataacagaatgccacaaaacttagtggcttacaaacaataaacatttgttattccacaccatcttgagaattagcagggttagggtgctggg<br>gaggattgttttggtctgggccagctccactgggactggatagtctagggttggctatgtgtcagctgaggggatcaaatttacttggccctctgtctct<br>catcatctagcaggttaacttgggcttgtttacaaggtagttgtagaattcccaagagcagcaaaagagggcaattctcaatgtcaagcatgttttaagt<br>cactgcttacacggtgcttactattgtcctattggccaaagcaagtcacatgattaatactagcattccctccaagaccatgac<font color="green"><u>AAAAATGGCCACAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>AAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>ATGGCCACAGTA</u></font>taaccagtctattccatggatggaaactatgaaataactacattgaaatttattaaagacataaaagaagataagaaaacatgaaaaa<br>gtgatgaaatactatcaaaaaagaccagaaaaatatgggaaaaaagacaaaaagtgtttctagaaatttaaaattggtttatagaataggtatatagaaa<br>caagaatagattttattataatgtcttgttactataacatatcttctattttatacaaatagttttctttagatcacccttaactattacccattaatac<br>tttttgtaaattctgttttctattgttgaacactgccttgtgttatcattaacaaaagaggaagttacatctctgtatgatttaccacagtatttt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DPY19L4:NM:181787:16/19	
0	chr8	97167265	97167601	1000720	0	+	pAlu8-96766781; 17182; RIP_Alu_chr8_097_02	NA	NA	SINE	Alu	Yb3a2	aaatacgctcaacctaattctgttttattgcgtggttttcatgggtcacctgacgtgtctatcaaaggagtggaaggtagtttcctcaagaatctatgag<br>ccacaatcacccacagccacctctcagtgactgtcacttgtgtgaatgagctgggacccaggctctgggtcattccactgatatggcttgagaagcacac<br>aaaatgctgtctttcattcttctgccaggactcctggcccacagtcagaatatggccttctctgcactgcagccactgcacttgcattgatgataacaag<br>ggctatccctcgcagggttcctttcatttgcaggtactggcctaggtgctttgtatacgttctcttgtccccataataatacctt<font color="green"><u>GAAAGAGAGGTATTA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAATCCGGCCTGGGCTAAACAGCGGGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGAGAGGTATTA</u></font>ttgcccccattttgcagatgagcaagctgaagctcagaaaattgaaat<br>aactttcactaattcagtccacgagtacttatgactctgctaggcattttgccagactctcaggatacagagataaagcaccaccaccctcaaggtgctt<br>gaggtctggtgagagttccagacacagaaacagataaatgtatcacaggaaattaaatgatagaactacgaacagggtattgtgggagcagagaggaagt<br>gcaaggaatgcggggagaagaaagttcagaggaggcttcctggaggaggtgacacacgaactgagtcttcaagtctacataggactcaggtacagagatt<br>gaggggaggaaaagcaattcctgggagagagcaaggt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	98852638	98852956	1000721	0	+	Ya5-MLS23; 11223; RIP_Alu_chr8_098_01	NA	NA	SINE	Alu	Ya5	tgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaactaaccggcacattgtgcacatgtaccctaaaacttaaagtataatttaaa<br>aaaattacaaaaaaaaaagaataattgtggaagttgcgaatcttacaacctctgggataacggctggtaatatttagaattccagcccctctcattctaa<br>cttggtggctggtggccttttattcatttcacaaggacagtttagctttgaggaggggctattatttaaattataaactaaattccttcctaaggctagt<br>tggggctatgcccagtaatggacaaggagagttcagagattagaggcaagatagagttagttagagctgatgtctttcacttgtcat<font color="green"><u>AATTTCCTTAGTC<br></u></font><font color="red">GCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATTTCCTTAGTC</u></font>ataactttgcaaaggcagtttcatttgttcttttgaagccaattcccatactctcttgcacccaaaca<br>aatacaactccaaagacattgacactaagctttatttaataacctttaactgcaatggcatttttctctctccttttttttttgttatccagttaggttc<br>cctctattctttattttcttatctagagaaatttggcaactgtctgtaagttcagatcttgaacagtaagatttctaaaatataaaattcccttgaatca<br>atgattgatttgcctaataaatatgaaattctggtggggagggaaaaaggaaaggtaactatgggagcttgctgggagtttaattgttgaaaaagtctca<br>ttcaagataccatttccta	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic	
0	chr8	104452090	104452395	1000722	0	+	4197; RIP_Alu_chr8_104_01	NA	NA	SINE	Alu	Y	ttcctcattcgtttatgagagtagcccaggaggcatctacccctcccaacccgccaggattgctgagaggacagagtacgcgtgcaaggttttgcaatgt<br>gccagagcttagtaagtgttagcacttatgaaaacagcgtttatatatcatttgggtcatgggactcttggaaaacctgatgatacctatggtttcttcc<br>tgcctccgccccacccccaccttccagcctccaaaaatgtcacctccaaaaaacaaataaggcagggcgcggtggctcacgcctgtaatcccagcacttt<br>gggaggccgaggcgggcggatcacaaggtcaggagatctagactatcctggctaacacggtgaaaccccgtctctactaaaaata<font color="green"><u>AAAAAATTAGCCGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAAATTAGCCGGG</u></font>cgtggtggcgggtgcctgcagtcccagctgctctggaggctgaggcaggagaatggcgtgaacccgggaggcggagctt<br>gcagtgagcctagatggcgccactgcactccagcctgggcgacagagcgagactctgtctcaaaaacaaacaaacaaacaaaaaacaaataagactcgcc<br>gacccatgccatagattgacgacccttgaaggtggctcgtgtacccaggttaagccacgtgtctctaaaatgttcatttaggcggcgctgtgttacctgc<br>gggaatccccgacctgcggctcctgaccacgggccaccccgcccagaccctgcaggcgggctctccacgagggtctgcgcagccccgcgggggtcctgac<br>aggccg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	promoter:CTHRC1:NM:138455	
0	chr8	107580285	107580594	1000723	0	+	7118; pAlu8-107179801; RIP_Alu_chr8_107_01	NA	NA	SINE	Alu	Yb8	gttttgatcaaaaagctttatacgaaatccagaatcctttaaatcacagcatggaccatagaaatgtgttttatttaagagactttaattcaagactgtt<br>gttttaaatcatgattgcatctttatgtttcattcaactcacatgttaagctgtgtgtgtgagtgtgtgtgtgagtgtgggcgtgtgtgcttgtaagtgc<br>atgtgtgtgcatgtgtatgtgtaaattacatgatgcatctgggcactcattgcagtatgtcacttaaaaactttaaaaaaatgtttggagttaattttgt<br>tccaagataattttatgtgccattagttcatctcatcgtcttatataacaaggaaccaactgatgcaggttttacctttttagct<font color="green"><u>AAAGAATTAGGAGAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCGGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAGAATTAGGAGAT</u></font>gtttaaatgttatatcctgttttccttgacaactataattttgcttgggagatgattaccagaatgactgctaaa<br>ttactatttttctattggtctaatattttattcttatgaaaaatgttatttctagtggtctttattgaagaccagttgatgagggtcctcctaagtcagg<br>ggaaagagtgtatacgtttcatgtaaaatatccttcctctttgtaacccaaacctttgtatagcttggtttctctttcttagtctatgttgacagcagta<br>caaatagcataatagattcttctctgtatatttagagggtttttttccataaacttatgtgatactttgcttttactgtgtaggaatgatgaaaacacac<br>aacagaccca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:OXR1:NM:018002:2/16	
0	chr8	109799352	109799662	1000724	0	-	19560; RIP_Alu_chr8_109_01	NA	NA	SINE	Alu	Ya5	ctctcacagttcaggactcaggtcccacccacatttctctctctctgttagtgttgtcaaaaatcctagtgtatcacagctgttctgtttctagcaggtg<br>ttatcactaattagctcttcaaaactaaacacaagaggagtctgcgctcttccccaagtactatcagccagctgctggctttctgctgttgtgaacagag<br>gtttgcaggcattttcattcatgtaccactgtaggtaataaaactctgagcacactccaatgtatatatatttatttaaagtatatccatatgctgtatc<br>aatatactatattaatacactgcatatttttctaactggtaccactctttcatctattcacagtacagcagccagggggtcctttt<font color="green"><u>AAAACCTAAGTCAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAACCTAAGTCAG</u></font>atcatatcactagaaaccgccaatggttccccatctcactgagaacaaaaccctaagtccttaaaatgcccctga<br>aggtcttatacaaccagttcaccacctctcattcttcctcccttacgccactcaaggcacacttacctcctgctattccttaagcatatttccaaggcat<br>atttcccactcagggccctgttccctctacctagagtccttttcctccaaatccccacatgaccattccctcgccccttctagtccctgttccaatggca<br>tctctccagtaaagccaccttaatcattctgtttaaaattgcaactcactctcccatccccagcattccctatctgcctgtcaccctttgtttctctctg<br>gagcatttatg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	110579497	110579805	1000725	0	-	pAlu8-110179004; Yb8AC702; 9160; RIP_Alu_chr8_110_01	TGTTTGGAAATAAGCCAAACAAT	GGGTAGCAACCTTTTTCATCTTT	SINE	Alu	Yb8	agaagatttgtaaaagactgtgtacttgcctgagatgtccaaaaggccactgatggcattgtaactcatgattcctgcatggggctttcggggtgccatg<br>ttatgagctgaagcaaaggtaggccaacaaatcccacttctcccaccttttaccaaaaaagaaaaagttaatgaaaattgaatatgcactcatatgaaca<br>acaacattaaagtttcaaatttttcacctgatggagatctaggactccgatgagcagcagtgagttcaatattaggatcatcattagttaggacatcaga<br>gcaattaaacccagggctacttccaacaattaatgagctctgtttggaaataagccaaacaatatagcattaataatagctcttact<font color="green"><u>AAAAGAAAACATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAGAAAACATG</u></font>ataatgaatagtactaaattctactgtagtaaataaaatgcaaactataaattcaaaaagtggatcattcattaaaca<br>aagatgaaaaaggttgctaccccaactggaaaagcactaagaataggagagggaagacagacatgtaaataattacatataaggacatgttatgtttctg<br>tgataaatacatccagggaacagtaggcacaaaaaagtggaggaagtgtcattaccacctaaactggctcagaaaaaacttcatagagggagtgaaaatt<br>taactatttcaagattagcaggtgataagcaagaagagggaagggaggaggagagataagaatgaacagcttttttgttgggtgcggtggctcacgcctg<br>taatcccag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	482	161	NA	intron:PKHD1L1:NM:177531:65/78
0	chr8	112237415	112237754	1000726	0	-	pAlu8-111836927; 3230; RIP_Alu_chr8_112_01	NA	NA	SINE	Alu	Yb8	ctacattgcctataatattgagggattgaaggtggcagaagtgtaataagtaacaaatgcaacaaatcatcatgattgctatgaagatttaacactacat<br>gctagaacatcttttcaggagtatttcttagttgcaatgatcataattaaacagatatttctcttcttatagttcagaaagtatgatagcactaagaaga<br>gcacattaggatgaaataatatattcttgcaataatttgatgcaaatatatagtaaatttagaaaataataagagttttaataaaacaataagagtttaa<br>taaataaacttatctaagtaaacatgagtttaaaaaataaaacaataagacttttaataaaatttagaaaacaataagagtttttat<font color="green"><u>AAAATAAGATTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCGCTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATAAGATTCC</u></font>aatatcacactctaatagtgtaaaaaggcttaatgttaaaaattaca<br>cagtgggtgcataatatatacctgaatttgtagaagttttatactattttaagggtaatttgataaaaatcatgaaagaattacatgaagttatacctaa<br>ggttatatttaaaattatattagtgtggttgttgaattattataggaatagtacgtatcttaacataataccattttagataataaattgtcaaaggaaa<br>aaaatttagagaagttttatataaaaaacaaccaaactgcgtctttctggagtactaactaaaagtatcttggaaacaataaatagatactctagttttt<br>atcataatccactttgggatatacagccagcacacagtag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	113154613	113154929	1000727	0	+	298; RIP_Alu_chr8_113_01	NA	NA	SINE	Alu	Yb9	ccctcttcacactcttagcagctacctttggcttctacaaatttatctccattcaattctcatgttagcttgcaggatatgtcaaattcaccaacatttc<br>tttaatatcctcagcattatattcagagaagtgactcagcaaaagcctatgctatttggccatttgtctatgattaaaaatgtaaatttacatcacagtc<br>actctatatgccaaatgattatttcagacaaagagtgctatagaattaaaaacctaaaagaagtaggattagcatacaatctacataatgcccaatatgt<br>caaactcatatccaaaagagctacaaaataaatacataaataaagaaacagacaaacaaatgcaggataggagactccctaatactt<font color="green"><u>AAAAATAACTGAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAAACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATAACTGAG</u></font>agggccccagccaaccacattcctaccatgggctcataattctagccacggggtagcccctcaaccttca<br>tgggccctgagactaacatagagagcccccttgaaaacacactaaggcattgctgcagagaagaagctgacactgggtccccaaaatccttgagtcctta<br>gtaacagcacaatgccccagtggtgggacaggagctcagcccccaccattctgtgtcctgccctgcaaccagggctgagacaggagccatggacagccat<br>cccacacgctaacacccactattgcagaagggcagccatgcatttttatgcatgcggaggacaaattccactctacacaaccagtgcagactgcccatct<br>ccctcacccgcccctcc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	116557410	116557721	1000728	0	-	pAlu8-116156926; 238954; RIP_Alu_chr8_116_01	NA	NA	SINE	Alu	Ya5	aatattgaggacctaaaattgcaaagtctatataaaccaagagctgcttgctggttaggcagaaaccaaatttcctcctagctctgccttgcattttcaa<br>tcagaattacttgtttgttacaatatgattttcttcaaaaatagatgctctgaggcaaaaggcgagccacaggctatatgttgaatagaaggttgattag<br>ttggccgaacttcaggagtgggagcctgaagccatgcttcctagggaaataactccctctctgatagtttgttttgctaattactagtcccaatttgagc<br>tcaatattaccaacaattgctttatagttacttatgagtcaggttcaacattttatgctgattttacttgcacttaaacaaat<font color="green"><u>AGAAAGTATATTTTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AGAAAGTATATTTTCTG</u></font>aacacctctttttggtaaagcatgttgtatatttgataatttacaatttagtttgctgttttcttttgttc<br>tttgttgcttactttctgtgcttcaagtttattgaacttcaagtttattgagctagaacttatcacagatggtaaatgtggaaaatgtgatggatgtaga<br>actcctcccacataggagtgaaatgggagactacttttgttttgtaattgatagtatgaagccttacatggactatcttcaatatgcattcattacatga<br>tacattcctggtattaaattgtaatcgtcgagatagcactgctaaacgagatagcactgctaaagtttatgtctgtggtttactatttagtataattatt<br>cttagcttaata	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TRPS1:NM:014112:5/7	
0	chr8	118292724	118292990	1000729	0	-	7894; RIP_Alu_chr8_118_01	NA	NA	SINE	Alu	Yb8	catgaactttaaaatcatttttttctagttctgtgaagaatgtccatggtattttaatgggaatagcattgaatctataaattgctttgggcaaaatggc<br>cattttaatgatattgattcttcctatccatgagcatggaatattattccatttctttgtgtcatctctgatttctttggacagtggtttgtagttcttt<br>ttgtagagatttttcagttcccttattagctgtattcctaggcattttattcttttgtggcaattttgaatggaagttcttttgtgatttggctctcagc<br>ttggctgttgttggtgtatagaaatgttagcaatttccgcacattgattttgtatcctgagactttcctgaagttgcttatcagctt<font color="green"><u>AAGAAGCTTTTGG<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGC<br>GCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGCTTTTGG</u></font>gcttagatgatggggttttc<br>tagatacagaatcatgtcatctgcaaacattgatagtttgacttcctctcttcctatttgaatgcccttaatttctttctcttgcctgatttctcttcca<br>gaacttctaatactatgttgaataagagtgatgagagagggcatccttgtcttgtagcggttttcaaggggaacgtttccagtttttgcccattcagtat<br>aataatggctgtgggtttgtcatatatgactctcattattttgagatatgttcattgaatacctagtttattgtgagtttttaacaagaagggatgttga<br>attttatcagaagcctatatatttttcccaaacttcgactcatcttccctgttcttcattttccaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	121923941	121924242	1000730	0	-	pAlu8-121523451; 7437; RIP_Alu_chr8_121_01	NA	NA	SINE	Alu	Ya5	cattatttgcacaactggatttagccctcctgaagctagaaaccttctgaagttttaaggtttttttgaagggttcaggctttacacaatggtctcagct<br>acaatcttttgtttcatacgagcccattttctcctgagccagtgtgtaagcctagcaccctaggttaccaaggcaagaagcacccactctaggacttgca<br>cagtttgacgatattgacacactcttttatagctctctgggcatccagtgtcttcccttatttactgataatctaagttatgctttcaaaagatataact<br>agcactatgaggtgtttttgttaggagagtttcaggttgtctatttgacgatgtttccagatataaaagtgtaactattttttta<font color="green"><u>AAAAATATGTTTTCC<br></u></font><font color="red">GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAATATGTTTTCC</u></font>catggtaaaatataggttgtcttctttctgacacaaatagccattgaaaagctgtattgcaactggatgacaactggcaaagg<br>ggaaatataattttcctgtttatccctctttgtttctcaatgtacttctgttaagctagaggtctaagagcagagaacatatttttatttgagcattctg<br>agtcagattaattagtccatgttttcaaaatgctttttgagatgaaatctttattcatcagcaaacctgggggttttttttgttatcataatgatagcac<br>cttttaaagatgctaattggcccacctgccatgaaagaacaacttcacctttgcatttaatgactagagacaacatacctaggcatcctatttattaatt<br>ca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	130976864	130976865	1000731	0	+	238394; pAlu8-130578553; Yb8AC1416;1104685372411; RIP_Alu_chr8_130_01	AAAGGGCAAGAATAAGGCAA;NA	TGGATACCACCCTTTTAATGC;NA	SINE	Alu	Yb8	caatcgatcctcccacctctgcctcctgagtagctgggactacatgcccgtgtcatcatgctagtgtgtgtcggcggggttggggtgggggtgggggtgg<br>gggtgggggcaggggcagggggaatactgttgttgtttgtttttttttgtagagacaggatctcatcgtgttgcccagactggtctcaaattcatggcct<br>taagcaatcctcccccaccctggcctcctaaagtgctgggattacaggcatgagccatcatacctggcagctttagaaattctggataccacccttttaa<br>tgcttatatacaaggcagatactttcttctaggatctaacatatcttaactttgtttatggtgttgtttgtcataacagtccagttttt<font color="green"><u>AAGAAAAATGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAAAAATGA</u></font>ttactgtttaaataataattcttcaaaattgccttattcttgcccttttattcactcatgtgattgtcaaattctac<br>aaaaaaattctgatgggattttgatttgattttgcattaaatatataattgccatctctataatttcaatcattttgtcatttaatctatgaatatgaca<br>gattacataaattcattttctgttgctaaaccattcttgcattcctgagatcaagtctgcttggttggttatttatttatgtatttatttatttatgaat<br>aaatgaatgagggtgaatgaataaatttgaaacacggtcttgctctgttgcccaggctggtcttgaactcctaggctcaaggaaacctcctacctcagcc<br>tcccaaggtgct	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	60;NA	500;NA	177;NA	NA;NA	intron:FAM49B:NM:016623:4/15
0	chr8	132462526	132462527	1000732	0	+	19655; RIP_Alu_chr8_132_01	NA	NA	SINE	Alu	Ya5a2	ctgaccctcactgggtggtctcactggatgataagggcctctgttttctcatctctacactgcagtagggttcagactataggtatttgttgagccatca<br>gtaaatggtaggcctttggaatactgagataaagtagatctgatccacaccttgttagatcaatgaggagacaaatatgcaagcagaacactttctacaa<br>gatgcattaagtactagagaatgagagtgaagcatttaaggaaaatcatttcattttgacaaagtaataaaacacatcctattcaagtgtaagaactgta<br>gaataagagttgagtaaaggatattttaaaggtgattctgaaaaataaaatgtccagagatgcttgaggtttcattgaggcca<font color="green"><u>AAAAGAAAAGCATTTCT<br></u></font><font color="red">TCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAG<br>GCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAA<br>AAAAAAAAAAAAAG</font><font color="green"><u>AAAAGAAAAGCATTTCT</u></font>aagagagttttctggaaatttcacttaagttgagagttaaagagatgagttactctttttttttttttt<br>tttttttttttgagacagagtcgctctgttgctcaggctagaatgcaatcacacgatttcggctcactgctgcaacctctgcctcctcggttcaagtgat<br>tctcctgcctcagactcctgagtagctgggattacaggcacccaccaccacacctggctaatttttgtatttttagtagtgacgggctttcactatgttg<br>gccaggctggtcttgaactcctgacttcaagtgatctgcccacctaggcctcccaaaatgctgacattacaggtgtgagccaccatgccccgccatgagt<br>tgcattttgacagg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	134398643	134398948	1000733	0	-	Yb8NBC525; 7874; pAlu8-134000238; RIP_Alu_chr8_134_01	TCTTCAGCACATGAGCATCTA	AACATCTGGAGGGATAAGCA	SINE	Alu	Yb8	gtgcttgtagtcccagctactcaggaggctgaggcaggaaaatcgcttgaacctggggggcagaggttgcagtgagccaagatcttgccattgcactcca<br>gcttggtgacagagcgagactccatctcaaaaaaaaaaaaattctatttatacttgaatactatcaatatattttaaatatatatttacacacacactcg<br>tagaataacatctggagggataagcataaaaatattaacagtgattatttctgagtggtagtttattttaatttttgtgatttccttttttgatgcatgt<br>acatatatatgtatatgtgtatgtattttgtgagtatctgaattttctaatagttgtacatgaagcatttctttctaaaagctt<font color="green"><u>AAAAATAGTTATTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAATAGTTATTATG</u></font>acagtaacaatcatttctatagcttttcttagtttactatcagctcaagaaaaaaactaagtctaatagctgggtgtg<br>gtggtgggtgcctgcagtcagttccagttatccaggaggctgaggcaggaggatcacttgagcccaggagtttgaggctgtagtacgatatggtcgtgcc<br>agtgaacagcaactgcactccagcctgggcaacatagtgagatcccatcctgtctcttaaaaaaaaaaaacttggtctacttacactagatgctcatgtg<br>ctgaagataaagtctctgtctacctggccaaatataagtattgacctgctataaaactacggatggcccatttgttttaggcagatgtgcaattcagaat<br>ccaccc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	58	801	479	NA	intergenic
0	chr8	140544452	140544772	1000734	0	+	pAlu8-140159566; 994; RIP_Alu_chr8_140_01	CCACGCTCGAGCGTACCTTCACC	CATCTCTCCACTTTTTTCTCTGTAACC	SINE	Alu	Yg6	ttacccttcctacctgcttgttttagttccttaccaattcttttccaatcttttagatctaaagttccttgttctggaaaccatgggcaaaattgttcta<br>ttatttgaaatagcttgattagattttttgtagatactttaactccccctctttttaaaagaattttaataaagctgagataagaggcatatttactttt<br>aattttacttttagtttgccccattatcaccctagcttcttccgagcgcacaagcttaccgtaaggctgactgtagacgtcctcgggatctcttgtcgac<br>ttgtcctcaatgaccacgctcgagcgtaccttcaccctagagaaaagcctccacgttgggcaccagatgtaggggtgggttgcccctac<font color="green"><u>AAGAAAACCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTA<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAACCAT</u></font>aaggagaatacgacttgagtcagctaggcaagatgggggaaaaaatgaatgagataaagtcaaaaaaa<br>cagaacatgcatattaaaaaatcatactagaatctaaaacaaatattttaaaagtgaatgtaaaaatggatagagtcaaataaataatatggataacaga<br>tttgcaaaaccactccaggttacagagaaaaaagtggagagatgaaaacacaaatatccaaattagtatcttaaaactataatgatagacttcaaggaaa<br>ttaaaaatataaaaacatcttaattagaaaatctgaatttaaatatttgtataataacaaattactaaagtaatactagaaaacacagataacctgaata<br>agacagtaaccagaaacaaac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr9	16453295	16453593	1000735	0	-	52451; RIP_Alu_chr9_016_01	NA	NA	SINE	Alu	Ya5	cagcctcaagtagctgggattacaggtgtgcaccaccaagcctggccaatttttgtattttaagtagagacaaggtttcgccatgttggcccaggtggtc<br>tcaaacacctaacctcaagtgatctgcctgccttggcctcccgaagtgctgggattacagacatgagccaccgggcctcccaaagtgctgggattacaga<br>cgtgaaccaccatgcctgaccctatttttgtctttttcagttgtgaattttgtagttggaggaggaattagaaaataatctcctatcattgttaatatgt<br>aaccgtcatttgcaacaaatggaaatttaattctgtttttgtcagtgcggtgagatagcatcaagtatacccttcatttggatagattagtc<font color="green"><u>AAGAATTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAATTT</u></font>aatacttgtatgctcacagtggcaaattttcagcatagtcatttttgttaactttccaaaatgttgtcagaacgtgctgtcattcactctcat<br>tcaatctcctgaaagttaactcctgtctcattttctgtgagatgatccatgtttcctgttacacacacagtcagtacactcttagtgtactagtctccct<br>gcacacctttcagaacaacattgctttcagtagtaaaaatggaaagagagaggccagtggagtaatgtgaggaaagaaggaaatgggtgggctgcggggg<br>aaatgatcagttccccagaaatggtcggttctggagaaggaagaggatagttctaaaatttgggcataaaactaggacatcaaacaagcctggatgaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:BNC2:NM:017637:5/7	
0	chr9	18741840	18742116	1000736	0	+	238417; pAlu9-18741739; Ya5ACA1841; RIP_Alu_chr9_018_01	TGGTCAGTGTCTGGAGCAAG	CAGTTATGCCCCATGGTTTT	SINE	Alu	Ya5	caggttccctcaactgtaaaatgaaggtaatcaatagagcttatctcatattgttctggaggcaattaaatgagataatgtgttaaggtgccctctatga<br>tgggaggtctcatcgatttgctcatttaaccaataacattaactatctaaaaggtgttctgatggaccctgcaagtaatacaaaactgactcagatgcgg<br>gccctacatcaggaggtatacactctagcagtgcccttgacaggtagaataactgtaatacaactgagaaaatggtcagtgtctggagcaagtatggata<br>cagtgttttaaatatggattatatttggatatatagaaatgaaagacattttgaagggcaaggaaagggcaaaagatattccaa<font color="green"><u>AGAAATACAACTTGCA<br></u></font><font color="red">GCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCGGGAGATCGAGGCCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAA<br>TTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGA<br>GATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATACAACTTGCA</u></font>taaagac<br>acaactagaaaaccatggggcataactggagaataacaaacagattattacagatatggctaagcttagtgtagatgaaaggaggtagtggaaacaggtt<br>ggaaagttagttacatgtcagagcagtaggaaaagattgagtgcatacacttaatattacagtctgatgaaaaacattaaggccaaaaaattttcaacca<br>actttcaggacaaaagctaggtgggactagctactagaggatctacttaccatgttttcttggccaattcctgtttgtaaaatctttgtgcctcagactg<br>taaacagaactttctaaaactgatctttagaagatgcttctgacgtacagcctgagccactgagctttgtccttatc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	456	166	NA	intron:ADAMTSL1:NM:001040272:15/29
0	chr9	22989504	22989819	1000737	0	+	401; pAlu9-22989404; RIP_Alu_chr9_022_01	NA	NA	SINE	Alu	Ye5	aactgaaaggcagagaaatgtaaaggagattttcatatcccctaaggtttcaagtttctgtgcttaaggatatagcgagagagcactaccccacagaaat<br>caagaaacgataacaaaaacaatacatagtaccatctctgcagattactaggaagagacttcccaatttattcaatttgtacaattcctttacccacaga<br>ccttgttttcctaaaacagaagcacattacaaactaatcatttaaataagtcactctgatgtcttgctgacacaggagaggatttgtatacattttcaaa<br>ctgttcttttttgtttctgatagggataacataatgtgccagcactgtgtcctgacaaagaaatctaaatccattcacaggcat<font color="green"><u>AAAAAATTTGAATGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAACAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATTTGAATGCC</u></font>agatccagaagaggcgcgacagtgtttggtaaatctgtgaatagacaaagatttagattatacaatcc<br>actattcagaactagctacataagttgtggggaacagcacaaaatgaaaatgtggacacctttgttcaaaaatggttaagaatttcaagatgtcaatagg<br>agagcattaaaccaagtgcagagtcctaagcatggagccataagcttgggaagctgcactgccactctccttcccatccattagtggaaaaaccaagtct<br>attttgtctaaacacacggggactgacacagaataggtgctcaacaaatatatgctaaataaataaatatgctgactataatttatactttacctatcac<br>atccaacttactaatg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	28574936	28575011	1000738	0	-	15754; RIP_Alu_chr9_028_01	NA	NA	SINE	Alu	Y?	taataatcttccctaataattggtatccatagctctcctctcagcagtcctgggacttgaattataccataccctcagtctaaggagccacagtccaaga<br>aacaacactaaaatgtttccaaattggtcatgctccttagggttgtcagatttatcaaatagaatacaagatgcccagttaaaacagaatgatttccaat<br>tacctgtgaatacatacactgagattttaaaaatgttgtctgggatatacaaataataaaaaacactattgtcatttacatgaaacgaattatgagtatc<br>taaattacgtgtctctttccttgattatacttctgtgatgactcgcctctttttaacagttccatgatttacaaaatttgtttt<font color="green"><u>AAAATCTCTTGCAGTC<br></u></font><font color="red">GTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATCTCTTGCAGTC</u></font>acagtcta<br>tattacatttacattgcaacacaactgtacagtagtcacatcagccttatttagttattttgtccattaagcattcattaatgaaaaaatatgttaaact<br>tagtgacaaaataatagcattctcatgaattttaattttctttctgatctctcttcaacagtataaatgatgactctgcatgttctcaagctagtgatta<br>tttaataacaaccatgtaaaaaattgaattattcaagtgataaaatctattataagaattagtcatcgcaggagccttaataattatccatttcaatttg<br>gaatttcttttcctgtttataagtaatagtgtatttatttcgacacagggataatttttttttggtcaattcctta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:LINGO2:NM:152570:2/7	
0	chr9	30481299	30481595	1000739	0	-	pAlu9-30481193; 3576; RIP_Alu_chr9_030_01	GCCTACTATTAGATAGCAGCTCC	GCTCTACACAGACACCATTGTAG	SINE	Alu	Ya5	agacatatcataatgaaaaaattgagaaaagtgaaaaaattaattttctgcaatgaaactttgatgtagtaatagaacctttatttgcttacttttcttg<br>atatcccaaatgctctacacagacaccattgtagttaagaaaagactctgggtaaactaattttgttatatatgaaaatactgttagttttatttcaaaa<br>attatccaaaaacaaataaatatgaattatgacttgaggtacaagcaatcaagtattttctcctctgtacatgtgtaatattttatttataattttaaaa<br>tagcactttatttgtttcattgtggattgattagttaacatatctcctttgctaggttgtatataactccagcacatactcaattt<font color="green"><u>AAAAAATTATTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCGGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AAATTATTTTT</u></font>gtctttttatacaaagcattgattcattaaatgttaatttatgaaacatagcataattttggtaatctcactttgtcatttttaaaatg<br>tccaaatctaagaggacgctccaatattattttctttttacacatttaaatatttaaggtaattattattgcaatattttcaattatacattctcaatac<br>ttcatagtttttcatgcaaatcaagcaattaagatcaattataggagctgctatctaatagtaggctataaaaatgagatgcattaacaatttttttaaa<br>tgaaatgtactcatgatttaatgccatgaaaagtttaattacataactcttattaactttcacaaaacactgtgttcattttacacataaccaacag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr9	32305162	32305380	1000740	0	+	2076; RIP_Alu_chr9_032_01	NA	NA	SINE	Alu	Ya5a2	aatggataaataaaatgtggtacatatacaaaatggagtactattcaccacaaaaaaagaatgagatcctgtcatttgcagcaacatagatggaactaga<br>ggtcattgtgttaagtgaaaaaagccaggcagacaaagacaaacttcacatgttctcacttatttgtgggagctaaaaattaaaacaattgaactcatgg<br>agatagatggtagaaggatggttaccagagactgggaagggtggtgggggtttagtgggggaagtggggatggttagttggtaaaataaataaatatata<br>atagtcacaaagaatgattaagacccagtatttgctagtacaacaggatgactaaagtcaagaataatttaatcatacattttaaaataact<font color="green"><u>AAAAGAAT<br></u></font><font color="red">CCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGG<br>CAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAAT</u></font>ataattagattgtttgtaacacaaaggataaatgcttgatgtgatggataccccatttactataatgtgatta<br>ttacacattgcatgcctgtatcaaaatatctcatgtaacccataaatacatacacctactatgtacccccaaaaaaactaaaatttaaaattgtttaaaa<br>agaaatgctagtgagccatgtagcaagaatgagaaggtgggtggaggagtaagagacagagagaaggagagaagaaaaaaaggaagggttgggggaagaa<br>gggaagaaggaaatattgctttgaatgtgtttaataaaaaggctgcatatcaaaaataatccttgaaaaaagcaacatgacataaaatatgaagtaatag<br>taatctggacctaaagtgc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr9	70967762	70968064	1000741	0	-	238617; RIP_Alu_chr9_069_01	NA	NA	SINE	Alu	Ya5	ggctgaggtggatggatggcttgagctcagggatttgagttcagtctgggcaacatggtgaaaccccatctcaattttttttttttttttggagacaggg<br>tctctcactcttttgcccaggctggagtgcactgatacaatctcaggtcactgcaaccattgcctcccaggctcaagtgatcctcccacctcagcctctc<br>aagtaactgggaacataggcgtgcaccaccatgcccagctaatttttgtcttttgggtagagatggggtttcgccatgttacccaggctggtcttgaatt<br>cctgaactgaggcaatccacctgccttggcctcccaaagtgcagggattacaggcctgagccaccgcactcagctaaaaatgttt<font color="green"><u>TAAAATAAAGATACT<br></u></font><font color="red">GAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAG<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATA<br>AAA</font><font color="green"><u>TAAAATAAAGATACT</u></font>ttttaaaaaataattatttgcaaaatgctgtgtacgtttttcagaagaaaagggtctggtcttacaattctttttatgttat<br>ttacatatgtttgtacaaacacacatttggatttcagtttttaatataagtgataattgtttattcactcaaactatgcagtaagtagatcaccaaaaag<br>tggtaaagtacaactaaaatgtcaccatccagagccaactactgagcacctttccaggtatctctctgcacagacaagtaggtacatattgtacacaact<br>tagacacctggggtatacacttgggatacaccaaatttgctcttttgcaacctatttctacataagaatagagtttgactatttgtttcatgaactagat<br>ctc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr9	73459215	73459486	1000742	0	+	15030; Yb8AC825; RIP_Alu_chr9_071_01	GCAGGAAAGTTCTTTGCTCTTT	CTGGGTTAGCCCTTATTCTTTGT	SINE	Alu	Yb8	atacatgtaactggaaaatgagattttttattatagtttttaagttaagaatagaataactaatttattttacttgaaaaaatctttttacagagtttct<br>tcttaaattttcatcttaaattacacctttctaatttaaatgaacagtttttatatactgattgtattaattgaaataagaacaaaatgaccaacaaagt<br>ttatttttttaactaacacacacacacacatacacacaattctctattatgaatattttaacaaatgtagtttcctaaaacaaacatacattgtctcaag<br>tttacaagtcaacattcttgcaatctctactaaacaaacttttacacatggcaggaaagttctttgctctttcaagtaaatagtcttag<font color="green"><u>AAGAGATCATT<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGC<br>GCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGATCATT</u></font>tcatgataagtaaagac<br>aaaagaagcatagataaattttataatcatggcaactggaatgtaaatattctctaagcttctgcattatctttttcatctaaacaaagaataagggcta<br>acccagtgtttgggattctcaaaaacactatgctaataacctcattgaagttttttattacgtattactgaaccatgtggcttagagtttcaactataat<br>tttaactgaagctgattctaagtatttgaggtaaataatgttctatgatatagaacattaaagaatctataggcagaatctatggccacatagtagcaat<br>tcatgttaattcttcacagtattccattgtataaagatcctacattctaatctactctctggcaataagatt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	456	175	NA	intergenic
0	chr9	77926556	77926858	1000743	0	-	pAlu9-72306749; 15602; RIP_Alu_chr9_075_01	NA	NA	SINE	Alu	Ya5	gtagtgaaaaaaaggtcaataataaatctcaatagcgacaaagtttgtttaacacttaacagtactttactcaattgtcattctatcaaacagcaagtga<br>aaatatcattagaaaataacagtctatcaaaagtgtgttcagagataaattcacatctttaaaaagttttattaatataaaaggaaagataaatgaacca<br>tgattcagccaataagagtcataaaagaatgaagaggaaaacaggaaagaaattttaaaaagaaagaaagaaaaacagaaaaaaaattactgataaatct<br>caaaactggacctttgaaaaacagtaataaaaaatttaaccaagaaaataagaagaaaacactaataaattctaaatattaaggcagtcat<font color="green"><u>AAAAACCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCTGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAACCAA</u></font>tacaagagatgtttatagtattagaaaatactgggatttcttctaaaaatggctttgaggccagatggtttccttcaaacatgcgaga<br>actctgatcccaagggtctctggagagaaaatacaaattgcaaaattccataatttattttgtgaatttaacatcatctgataccaaaaacttgcagaga<br>caggccagtttcaaggtcaaaccaacgtgggttaaaagcttgactctccgtttactacccatgttaccttatagatgagaattacatgaaatataccaaa<br>agtatactttagaaaatgctatttatctgctgtaggtacacaactaatgttagctagctgctgtaataatagcatagaacacacatatatacacacacat<br>tag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PCSK5:NM:006200:9/21	
0	chr9	78314340	78314648	1000744	0	-	1639; RIP_Alu_chr9_076_01	GTCTCAAACTCCTGAGCTCAAGCG	CAATATGGTCTCTCAAGTATCAAGG	SINE	Alu	Yb8	gggctggggagcataagactccctaaggcaaaccatatgtggaaaaagctccaaatacatatttggcaacaattttatggagctggaaggagtcattctc<br>aaaatatgaagatgtgacttcaggaaattctgaatgctcctttctgttcaatagttttcataaatgagatcacattatatgtagtcttatttctcaatat<br>ggtctctcaagtatcaaggatattttaaaaaaccaaacaccaaaactggtaatttgatacagaaattttcttttaatttgaatcatctttattgaattat<br>aatttttcatattagccatttccatttcttattgtacttctatgaattgttacatcctttgttcatttttctcttggagtcttcatgtttaaa<font color="green"><u>AACTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAC</font><font color="green"><u>AACTATG</u></font>ttagtatgagggagttgtggggagtgactataaagggtacaaggtttcttcttggggtgatgaagaggttctaaaattgattat<br>gggccaggcgtggtggctcatgcttgtaatcccagcactttgggaggctgaggtgggagaatcgcttgagctcaggagtttgagaccagcctgggctaca<br>tagtgagaacctgtctccatatttaaaatacaaataaaaataaaatggattgtggtaatggttataataaaaaccacttagatatacactttaaatgggt<br>aaactgtataagtgaattatctcaatataactggttttaaatattagcataaatcatttccatattaaggtattaagcctccctcttccaaaatctgtag<br>gcaaatgtt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr9	84223680	84224007	1000745	0	+	21284; pAlu9-78588785; RIP_Alu_chr9_082_01	NA	NA	SINE	Alu	Yb8	aagttacacaataatatttcctgcagcttaaaccacagaagcactcacccttgagtgctgtaataggtttctagaatttatttaaactataaaaaaacac<br>aggacgaatggttgttttggctcacgtaatggatcagatatctaggaatgccaaaagcatatttatttactcacaggtagcaaaaacatcatataattct<br>ttttgtggctgtccaggcaatgtaaattttttttttctgttccagtaaagtgtacattgattagaaattattgttgtaaaaagaccaccactcaaacaga<br>gggtctgcactaggcaagatatatgaaacccaaagtgcctgttagggtgctgtgaaaatgtacgccttccttttatttattttttt<font color="green"><u>AAAGATTTGTTCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCTAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGATTTGTTCCA</u></font>tgcaggaatagaagccttttttgtgtgtggtcatattgctgagaatcatctggtaaat<br>gagccaagaagagagagcaagcaaataatcttaatcacttgggaatataagaatcaaacatcacattgtgtgcagtaatgaggagaatacattttagaca<br>ttggtgcaaaaatctaacttctatctttttgctatagcttactcaatttgagctatagtatggattgggattaaaagctctaagttaaatggtggtgtaa<br>ttatgtgttaacatttcttatatataagtttatttacatagcatatttggaatggctctatttttaatttagtattgaatcgctgcacatttgcaaactg<br>cttcagatgcactttctgaaaaggtgct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	95770180	95770418	1000746	0	-	52453; RIP_Alu_chr9_093_01	NA	NA	SINE	Alu	Yc1	cagtggtagccagcctggattcactgtgctggtgcagggctcccccgcctcattcgttcagtttatttagcagatgactcaccagcatgtgctgggggcc<br>tgggctggtctggggctgcaggaatgtgcatcagctggtcctcgcctcacgagaactccaggacgcaagtgctagtggtatcctcgtttctcagtgggag<br>aaactgaggcacacagaaggaatgtgcctctgtcactgagcgggacaaggtttgaaccggacactgtgccacctcgcttgcaccttcatcttcatgttct<br>tgctgtttcctcatgcataactggtgctccctttatctgattgttctctttaaatgacaatgttgttcttactgaataaatgtgttt<font color="green"><u>AAAAGTGATCTGG<br></u></font><font color="red">TCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGT<br>AGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGC<br>GACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGTGATCTGG</u></font>atcttagttttaaaagctgtgtgcagtggctcacgcctgtaatcccag<br>cactttgagaggaccaggcgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactagaaatacaaaaaa<br>ttagccaggcatggtggcaggtgcctgtaatcccagctactcgggggactgaggcaggagaatcacttgagcctgggaggcagaggttgcagtgaaccaa<br>gatcgctccactgcactccagcctgggcgacaagagcaaaactccgtctcagaaaaaacaaacaaacacaaacaaacaaacaaaataagtaaataaataa<br>aaataaaagctcagcatcacctagcaattgtggacgtag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr9	97305836	97306165	1000747	0	+	12509; pAlu9-91565050; RIP_Alu_chr9_095_01	NA	NA	SINE	Alu	Yb8	agcagggaaatcttactcctgaatgcaaatgctcacactacttactgctgacgtgaacactcagctcactctgtcacaaacaagatctctacacaatcac<br>ttctgctttgaaaatgaaattaaatctatatggctactgttgtatagtcacctctctagttgggtctatctgcatttatgaaactgtcgcttcttctcta<br>gggggagaatctagcacagaatgaatgaatgaatgaatgaatgagagatcaaggacagggcaacagaacaagtgacttatgtcattagtaggcaaagtag<br>acctggagacaaacagacaacccatagtttcccatctgtaaaatgggacaatcctcatcataaagacattacatccactatcatgttataaaaacaaaa<font color="green"><u>A<br></u></font><font color="red">AGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A</u></font>agataataatagctattttattgaatcgtaaggcatgcgataatatataacaaatgcctggtacatggc<br>agttgctcaacaagtgacagtattagtactgagtaaataacatttggcccaagaccagtgagtcatgctgaaactgccaaaagtaagcaaagtgagtgtg<br>cccctcagaagtgtcctcatccagtccattgaaaaagaaaaactttactccctctcactacacaactggcagctcccataaaactgctaggaagcacact<br>gcatctccttccaggacttgaaatgggtcgtgttatgcagaaagcaagttatttccagaaatatgcaatgttaagaaaataaatcacattctatctcctt<br>caacatgtcaaaggtccactgaaaactctt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PTCH1:NM:001083605:2/24	
0	chr9	99800897	99801209	1000748	0	-	807; RIP_Alu_chr9_097_01	NA	NA	SINE	Alu	Ya5	atcttggcgtttccatgcaaaactctaggcaactgtaatccagctagaacacaagatcatgaattacacgacccaaagcttaaaatagagctgtctttgt<br>tccatctacaattcaggtatgccacacaacataaatagccttttctgttaaagtgtaaaagtacataatggcttggccagtctgaagaaaaaaattgtta<br>agaacatgtttaaggctatatagtcaatacatgaatttcaaaagtggatccaaaacaaaatacccccaaaaattctcttctgaaggatgccaccacaata<br>tcaggcagggagagagcaaagccacagaaatacatctaattagagaggccctgatctttaaaattgggacttacataaaaagt<font color="green"><u>AAAAAGCCACCACTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAGCCACCACTTTC</u></font>tcaaccaattattattgccagtaatttcccccactataaagaaatatgaaaatgaaaatgaccagtaagt<br>tccagtttccaaattctcagttacttaccaaaggttccaaggtgctgatatctttcagtttatttccacttaagtttagatgtgtgagatttggaagttt<br>ttcagctaacatgtccagacctccaaagattctattttcactgagttcaagctgcaagagaaaatggacacaacacaaacacaaatacacacagagaaac<br>agaaatcatttaaggtattgtaagtaacaaatacagttctcaaagatttatcaagatcaaatgatccctatttctattagggcatgcatgttcattttgt<br>ttaaatccaaata	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ANP32B:NM:006401:3/7	
0	chr9	100249168	100249465	1000749	0	-	55150; RIP_Alu_chr9_098_01	NA	NA	SINE	Alu	Ya4	ttggctggaattccaagtactctaagtaaggtcaaactaggtagccagagaaaaccaacaggttcctcgttccaggggaatttgcaatgttggctcaaac<br>ccacctttatttcatccccactgttgcctcgccctactgtgatcctggagtttgtgcacttggtttttttaagtcaaaatataattttacacacacacac<br>acacacacacacacacacacacacatacatactagttacatatcatcttgttagagttgtcccatctctcctgcctgtttgatcttttggggtcctggtt<br>ttactttccaatgtagagactaaacttcaggcctcccaccagccagacattggtgtcttatatttgatatcatcatttactcat<font color="green"><u>AGAAGTCTTTTTTAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AG<br>AAGTCTTTTTTAGG</u></font>ttgaatctgggaaagaaaaagacaagaaacagggcaccgggaactccatccagaaataaggaaaactctacccagtcaagatttga<br>caccacttggggctggtcattcttccagttgtgactctatcccccagattatcctgattgtgcctgtttcttgactttgtgctcaaggctgtcactggag<br>aacttgttagaagctctgaaatagtccaaatgtggtataacaactgggagccctagaacatggggcttgttccagtgaccccatgctagcgtccaatgcc<br>accccacggtttcctattctgaggtccctttttcatgttcctttcttgtctgctgcccgggagcaacagaaaacccatccagaactttctctgtacct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:GABBR2:NM:005458:7/19	
0	chr9	117149478	117149808	1000750	0	-	238848; RIP_Alu_chr9_115_01	NA	NA	SINE	Alu	Yi6	aggatgtatggaaatgcctggatgtccaggcagaagtttgctgcagaagcagggagctcatggagaacctctgctagggcagtgcggaagggaagtgtgg<br>ggttggagcccccacacagagtccctactggggcaccacctagtggagccttgaggagaaggtcaccatcctccagaccccagaatggcagatccactga<br>cagcttgcaccgtttgcctggaaaagccacagacactcaacaccagcccatgaaagcagctgggagggaggctgtaccctgaaaagccacaggggcagag<br>ctgcccaagaccatgggagcctacctgttgcatcagtgtgacctggatgtgagacatggagctaaaagagatcatttgggagcttt<font color="green"><u>AAGATTTGATTGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATTTGATTGCC</u></font>ctgctggttttcaaacttgcatggggccagtagcctctttgttttggccaatttt<br>ccccatttggaatggctgtatttacccaatgcctgtacccccattgcatctaggaagtaactaacttgcttttgattttacgggctcataggccaaagag<br>acttgccttgtcgtagataagactttggactgtggacttttgagttaatgctgaaatgagttaagactttgagggactgttgggaaggcataattggttt<br>tgaaatctgaagacatgatatttgggaggtgtcaggggagaatgatatggtttggctgtatgtccccacccaaatctcatcttgtagctcacataattct<br>catgtgttgtgggagggacccagtgaaagat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DEC1:NM:017418:4/8	
0	chr9	121571667	121571973	1000751	0	+	20034; RIP_Alu_chr9_119_01	NA	NA	SINE	Alu	Ya5	actactcatttctctcataattcactgatggttgaagatctgggctccatacaatcattctagtacttaagccccttctatttaatgacactaccatatt<br>ccactgtcttaaagtccccttctgcatcatccgcaaccagacaatagacaagggaacaaatttaatgaagctttgcaaagaatgtttaagggtcctggta<br>tgtatagcaaatactacttgcacttacattcccttagctaaaattaaatctcatgaccccacttaaatgcagaggagactgggaaatgtagtctctggaa<br>taaaatggaatggagtgcagtgaaccatcatattttttctgtcacagtagatatttgctgtctgcaagagagtagtaaagggaagggat<font color="green"><u>AAGAAAATTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAAAATTGC</u></font>aaggaaaaggacaaacttgagcaaaagcataattgtctcaaaatactagtcaaatttggggaagcacaaacaatttgatctg<br>acagatgctcaggttggcagtctcagtaataatttgaggctcacatcatccagggacttggaaaatgcactaaggagtttggagtttggactttattgta<br>cagctaaaggggagctgttgaacgatttttaaccagtagaaaatatgattatatttggaatttagaaaaatcattctctgagccatgtagatggtggttg<br>aagaaagcaagacaagaggcaaagagaacaggtagggtagaattgaatcatagatgtaagatgtcagactaaggatggttgcaatgtggtcagaaataag<br>aagatag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chrX	22765486	22765758	1000752	0	-	Ya5DP13; 13610; RIP_Alu_chrX_022_01	NA	NA	SINE	Alu	Ya5a2	taatgcagcacatgaatctactgagttgttttagaattgaattaacctataggtgaagtgcctgacacttggtggatgctcaaaaagtaacaatcctcct<br>attcctctcttggtttctatgctgaacatccttcttcatatctatgcttacttcctcatcatccttctggctgattcctttacttcctctttttgcctaa<br>atatgggtgtcaagtcggtactgttgttggccctctacttgagcgtgtccctctcacagttcatgtccgtttttatagcattctttctcactgtatacct<br>ctatagagccaagcctgatactctgccaaccccacatgtccaaatgcctagtggaagctccgtttggatgccccaccccacttt<font color="green"><u>AAAATCAGTATATCCC<br></u></font><font color="red">CCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGGTGAAACCCCGTCTCTACTAAA<br>AATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTG<br>CAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAATCAGTATATCCC</u></font>aagctaactat<br>tcaccgatctccttgtcacattccccataccatcccaattatttctttgactttaatttgtcccttgttgttactactaaaaaactttgaatatgatttg<br>atttatcccccaccttccaatccatatccagtggtcagcctcatgctttttgatattctcatgagatggagtatattataggaataagcatagatatctt<br>ttgtcttaaagctctgagtccaacacttagttacatagttatattggccttaggaaaaataaatgacctctgaacatcacttttctcatctaggaaaaca<br>gaataatcatacctctttcacaagtttcttgttggagatgtgaatgttctttctaaacaaacaaatggttata	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID:14604797</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chrX	24202637	24202953	1000753	0	+	pAluX-23494670; 13459; RIP_Alu_chrX_024_01	NA	NA	SINE	Alu	Yc1	tgtagtataaggatgcgattattactatattctgtccttacccttagagaagtaacacctcgtggcacttgactgtgggttctctggggtgagaaaccat<br>gtgctatttattttaatctggcacttgacacattaatgcttgttggatggacaaacaacagttaagagatgtcgaaagtagacaccatgtggctcttctg<br>ggcaggacctcatggaatgcccacttggagatggggacgctgatgggtccagattctgaccttgttttaaagtttcagaatatggtgatgcaactgtaga<br>aagctgatttctgctagctcatgagagattgttttgtattttatcacaacttcattgagatataattcatataatttactgactt<font color="green"><u>AAGATGTAAAATTCA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGA<br>AAAGAAAAAAAAAAAAA</font><font color="green"><u>AAGATGTAAAATTCA</u></font>ataatttttagtatattcagacttgtacaaccaccaccacagtcaattttagaatacttttgtcctct<br>attaaaagaaaccggtaccttttggcagtcactccccagtctcacctcccccagcccctggcaaccactaacgtgcgacgttctgtctctctagatttgc<br>ccattctgggccaggcgtggtgactcacgcctgtaatcccagcactttggaaggtcgaggtgggtcgatcacctgaggtcaggagtttgagaccagcctg<br>gccaacatggagaaaacttgtttctactaaaaaatacaaaagttagccaagcatggtggtgcatgcctgtagtcccagctacttgggaagctgaggcagg<br>agaattgcttgaacctg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	33118515	33118824	1000754	0	-	Yb8DP2; 238887; RIP_Alu_chrX_032_01	NA	NA	SINE	Alu	Yb8	ttagggcattaggaatgaaaaagacaaaatgcaaacaaaagatatttagatatttaattagtaaaacttatttgcgcgggtaatgaggagagagacaaaa<br>atagtagagagcaaatcatcaatactgacttcctgatttcttactagggcagtataggtgtacactatatatatatatataatattatatattatatata<br>tatatataatattatatattatatatatatataatattatatattatatatatatataatattatatatataatattatatattatataatatataatat<br>tatatattatatatatatatataatattatatattatatattagtactacttccttttataaattggacagaaagcttatatgtat<font color="green"><u>AGAAAGAAAGATCA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AGAAAGAAAGATCA</u></font>atattttttcaaatgtccagccaattgtttaagtaagttaaggtatgtaatctaaacttataatttaagtttaaag<br>aaaaacattagaccaaatatttagccattttgatgtagccaagtttatgcttcaggagagttgcatagttatgaattgagctcacagaaatacaaataca<br>cacgtcatcatagtgtgatatccagcatagatggggggcagttatcataaatcctgtcctaggctgggtttggaatgtgagacagattttataataataa<br>tatttcatctacataaaacagtccatttcctggactataaggatcatgataccatttgtttatcatggctacaaacagaacaggaagtagtatccttcaa<br>cagagaagat	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID:14604797</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DMD:NM:004006:1/79	
0	chrX	33212773	33212774	1000755	0	+	248;1104685752052; RIP_Alu_chrX_033_01	NA;TCTCCAGTTACAGGCCCTTTT	NA;ACCCCTCACTGCATTTAAACC	SINE	Alu	Yb8	tttctcaacaattagtgttttttaacaaaaggacataacagtgcatagccaaaaatttattaatttttggaacttttagtttccaaattcttcttcatta<br>aacacaagataaaaatacttaactttttaagacaggtgaatagaaggaaatttttgctgagcctcttctactttttatgttaaatattttattctatgct<br>ttttatcatggcttacacaaaccttcataatgttgctgcaatatatttactgactatcaatgctctcttcaaatttggtataggtatatttttcagcctt<br>tcccccttcttgtctccagttacaggcccttttatgggcctataacgttggttttctatctcaattcaaaattcaaaagaaaagactttaa<font color="green"><u>AAAAATCAT<br></u></font><font color="red">CGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACC<br>CCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC<br>CCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAATCAT</u></font>tgccctaatgcttaatttagagcgtagcacatagatattcccaatatgttctcattaaaggtattgatctttgatttttaaaagtaagtaac<br>aacaaaactgtgagagaggagcagctttttcctttgagaactgtggtttaaatgcagtgaggggtattaatgactacataaatgacttcctatttcagtg<br>aagtgtttaataaggtctttaaaacagtacttcatagcatcctgctcttcaaagcaacatctgtggctctttttggttccaataagtgataaataacaac<br>aggattttggttcacgtaaggacctaaaacaggagagttggttaagctattcatacatgttgctttgtaattgggctgatgtaattttattttattgtg	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;60	NA;563	NA;254	NA;NA	intron:DMD:NM:000109:1/79
0	chrX	71039957	71040262	1000756	0	-	pAluX-69356353; 238289; RIP_Alu_chrX_070_01	NA	NA	SINE	Alu	Ya4	tggcacgtaggaggcactcaataaatgttagctcctattattagtagtatagatagtagtttcctatttttaaaaaaggaagggactttttttctccctt<br>ctccatcctgggtcaacatagcctcaagtccttacttcagagtttctgaagaatttattaaaatcaggaatagtctagatcttgtctcttgccaaattag<br>cttttaatttgtcataggctttctgacattcaggttgtctcaacttatttatcaaacctttctcagccaaattagtaagatttattaggttaaactgcat<br>tacaaacttgtggcaataacaagtgctggtccttatttgcttctttatgtctgggttgtcccacttcccaatcatcttagctatatctt<font color="green"><u>AAATAAGTAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAATAAGTAGG</u></font>attctattggttactctctagcccagagtcatcaccttggacagtctaaatggatgttcactcaactccttagtaagcccagt<br>ttctggagttacccagggaacagtcactaaatatcttagatgagtttacatatttacattaaaaatgactatctcagggaggagccaagatagctgaata<br>ggaacagctctggtctacagctcccagcatgagcgacgcagaagatgggtgatttctgcatttccaactgaggtaccgggttcatctcactggggtgtgc<br>cagacagtgggtgcaggacagtgggtgcagcacacaatgcacaagccaaagcagtgcgaggcattgcctcacccgggaagtgcaaggggtcagggaattc<br>cctttc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	106548130	106548131	1000757	0	+	31023; RIP_Alu_chrX_106_01	NA	NA	SINE	Alu	Ya4	accaaaaacagctttcttgggcaacaccggccagagacactattccacctccctgctgaggtccagcttgaactttattcatttcaaaaccaaaccattc<br>agccagaccctcaaaccactgaagacgctcagtcagtcaaaatgggtcagaatcaagtgcaaacctctctgaagtgcttatcactctccagcatctccta<br>aatcttgaaatgatcctaggcctttcttaagcctcccttccacctgctggtcagatagaccctgtgttgtaggactcttccagccttggaaagtggtttc<br>cagaaaagtttgcttgaagtctctctaatacccaagaaagacatggaagccccttgaggtaagtgctgttcttcactgattgccctgca<font color="green"><u>AAAGCAGTGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAA</font><font color="green"><u>AAAGCAGTGTT</u></font>a<br>cttcaccccttgctgcctttatccacaattcattagtttccactgatgaaaacaatcaggttggaatagatgaatacagccatgtgtatgcattagcttg<br>gtccacttcccagtatgtagactatcatatgataaagcttccatgaatacattgcattgcaaaaacaggaactgcatacaaattgaccttttatcatctt<br>aaaaggtcttccctgaggactttctaagcataaattcagtggaggaagtcacaaaggaaaaatatacatacatgtaacaaagttgaaatcaaaaatttat<br>gtgtattaaaaaaacagacattgctggcaggtaaataaattggtacaactttcatggagggaaatctggtatatgtattaaaagcctt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chrX	116338390	116338692	1000758	0	+	31314; RIP_Alu_chrX_116_01	GCACCACTTGTTGATTTTACCTATTC	CATAGAGGGTGGAGTAAAGCAGCTG	SINE	Alu	Y	cacctggaatggatgacgagacccacttaaaattattctatacaggcaattctcttaacagtgccaaagcacagaattgtgatgccttagtaattgaaaa<br>attgcctggtgagagactttcaaaagtctacatctgctgaggttttcatctgtgagaaggaaaatatcttcattactaaataaacattgaagcaaaactg<br>agaggcaaaataatatatgggctttcaggttataagtcatcagttctgattgttcaatgcaccacttgttgattttacctattcataaaagaggtgcatt<br>aaaacattccctgagtactttacaacagtaattctcaaaacgtgatctctggaccaccagcagcagctaatcctgggaacttgt<font color="green"><u>AGAAATGCAAATTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCGCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG<br>AAA</font><font color="green"><u>AGAAATGCAAATTCTG</u></font>aaaccccacctcagactttctgaatcagaagccctgcaggtggggcccagcaagttgtgctttactaaacactccaggtga<br>tttttttcagctgctttactccaccctctatgaacacagggactctccaaggtgttcaccatcataactgttgaaactagcccatttctttttaaaaaat<br>tttttaccattaatttttgtgggtacatagtaggtgcatatatgtacagagtacatgagatactttgatacaggcatgcagtatttaataatcacatcaa<br>ggtaaatggggtatccattatctcaagcatttatactttgtgttacaaacaatccagttatactgttatagtttaaaatgtacaattaaattattactga<br>cca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrX	4914724	4915022	1000759	0	-	Ya5DP4; RIP_Alu_chrX_004_01	AACACCTCTGATGTAGCTTATG	CTAGGCCACCATTAAGCCAA	SINE	Alu	Yb8	cattgtacccaataggcaggttttcatccctcatccccatcccacccttcctgcttctgagtctccaatgtccattatacaattctgtaggcctctgtat<br>acccatagcttagttcccgcctccttttatgccttttgtataataacaatcaattgcagattctacatttgctgataattgaaataactctctttagctc<br>tatttacaacacctctgatgtagcttatgtttttatttggaattctacaatactgtcatcatttttaaaaactagattgaaaatggattattcactaaaa<br>catcatttttagtgagaaaaatgtattccataaccttaccattttctaaaaaatacacaaagtttgatgtcaatgaactccctt<font color="green"><u>AAAAATGCCCCACCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAATGCCCCACCAA</u></font>tagtacccattattaataacctgatgtgcaacttcgatgtgctttttaaaatgcgtataaccaatggacacacacacacacacac<br>aaacacacaaacacatgcattcctactattttattattggcttaatggtggcctagtaacaatcaactgtagagtttcttactatgaaatgttcctgcta<br>tacaccttttaatgcacacatgtaattatttttataaaatttatataaagtatatcagtggtgatctatttgacaattcttaatataatacatatcacca<br>aattattttctatgaaatttgcctcaatttacagtctttccagcaataaatgagaagggtgagaaggaagggagggaggaaaggaaggaaataaggaag	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID:14604797</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chrX	11006331	11006652	1000760	0	+	Ya5491; RIP_Alu_chrX_010_01	ACATGAATGTGCCATTGGTT	CAAGAAGGCAGCTGTCCTAGA	SINE	Alu	Yb8	ccctgggggctgacctaaatggactttgtgaatgagccttccaatggggagtctcaggatagtatcagagaaagtgaagagattcagtttgaagtaggaa<br>ttcccccagtgttgtagctgcaaagtgatcttggtcaggttctgttagctgaaggtcacagcctagtcaggtagccctcttcactcagctctctttgtgt<br>ctgggtcctggaagctgatctcttccctccacccttctggcatgggatgccaacagtgtccactcactagcttacaggtagcgtacctacacttgaggtt<br>ttcacacctttgtaactagaccctttactaaagtcttttcagattactcaacatgaatgtgccattggttatacaagcagttt<font color="green"><u>AAAAACTTCTAACTCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACTTCTAACTCAT</u></font>accgttgtgagatggatttgtactctctaggacagctgccttcttgaggcaggtatgcaag<br>ctttcacggggtccctttgggccaccctgaccacaacacctgtaacgtgacatggccttttgtctcactcactgttcccagtcccctcttagcatctgtc<br>ccagcattgcacacaattgcctcctaatgctgaggtccccttgcctagggtgatggacattcggatatgtcatcttgatcccttttcaaggaaagccttg<br>ttgtgctgagagtgctgcaggcagacagctctcagctggcagcaacttggcagcagaaggctgccacggccaaggtcacatccttcccagggtggcctat<br>acccaatggccactggtcaaag	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID:14604797</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chrX	5580351	5580680	1000761	0	+	Ya5DP3; RIP_Alu_chrX_005_01	ATCTTGAGAATCTCTACCAC	TCCTCTGGATTTCAGGGTTG	SINE	Alu	Yb8	tcatgatataattctgttattgttgtttgcctcttattacccactagttttgtgatgtatttttacttaatctgcttatttataaacattttacctgtag<br>cactagaataaataggttctgccacattagtaaatttccagatataattttaaataggaattttagttttagaagaaaaacaaaaccaaaataatgctaa<br>cctgtctttttttcagaacggtgtatgtacacattttcaagaattagtaaaaagtcagtttgcctctcaaataccacaagtacacatctaaatttatctt<br>gagaatctctaccactatttttgtttaaatttaattaaatcataaagagcactgtttgcatgaatctttgtatgaaactgctctac<font color="green"><u>AATACCACCGAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAAAATAAAA<br>ATAAAATAAAAAATAAAAAATAAAATAAAA</font><font color="green"><u>AATACCACCGAAGA</u></font>gaaattttaaagtaagtacaaccctgaaatccagaggaaaaaatcatttggcttta<br>aagcaaaacacttttatttaagctgacaaaacacacacatacacacacacacacacaaaatgtcagtgataactgtgattgaagccactaatattttaga<br>aaaccaaattccttcatctttcaaaactattggtttcaaagagatccgcatacagagagttatacaactgcgggctttgagtttggctgtgagctcttga<br>aactgttcatagggtttctaaaactgtgacgatcttcctgtcttctctttttcttttatatcctgtttctaatttgtttgatggatctttttgaccaaac<br>cttcaaaatatatccagaggcagatactac	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID:14604797</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chrX	129367492	129367809	1000762	0	-	Ya5DP71; RIP_Alu_chrX_129_01	CACAACAAAGTACTGCAAAGAGT	CTTTGTTTTCTGATTTTGGAAGG	SINE	Alu	Yb8	actacaggcacccaccaccacacctggctactttttgtattttagtagagatggggtttcaccatatggcccaggctggtctcaaactcctgagctcagg<br>caatccacctgcctcggcctcccaatgtgctaggattacaggcgtgagccaccgtgcctggccccaagcattttggataagggatattcaacctgtaata<br>caatacacaacaaagtactgcaaagagttaatatccttcatacatgaagggctcatgtaaaatcaacaagaaaataaggaaaatacttgtagaagaaagt<br>tggcaaaggatatgaatagacaatttacaaagaaaaataatgggctgcaaatctataaacagatgttcaacctcactgatgatgaaat<font color="green"><u>AAAGGCAAAGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGGCAAAGCA</u></font>aagtaataatgagaagccctttggcaaatattttttaaaatagtcactgttaatcaggattcagaaaaat<br>gggcattctaatgagtgtggaaattggtacaaccttttggagagcaatttggcaatgtttataaaacatctttaaaatgctaacatattgatccatattc<br>ctctttcactaaagagaccatgagggatgcatacaaaaatttatatactataatgtacattgcagtataattcataatagcaaaccattggaaataatgt<br>ccaacatttttttaaaaatgataaagagatatgccaaaacattaaggttttccttaagagtatgttctattttcttctttatactttattttgccaaatg<br>ttctataatgactatgta	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID:14604797</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:RBMX2:NM:016024:3/6
0	chrX	114576762	114577043	1000763	0	+	Ya5DP62; Yb8NBC102; Ya5NBC98; RIP_Alu_chrX_114_01	TATAGCTAGTAAATGGTAGAGCCAGGA	CTGTCTAAGATAGTGATTGGACCTACTATG	SINE	Alu	Yb8	tttctgtgatatctcaagcccaagtcctgctagttatcttctagatgaggcccaccgctagtcttgtctgtattgagtataaattagctgttaactatat<br>aaaatccaaattcagtaatgccagtggtatccagttactaacatctctcacctcccttttaaaagcattgttgttacacccaataatagtaataataata<br>agaggtatcatatactgagtgcctgccatgtgctgcaagctttatagatgctacataacttaatccctcaacaactctgtggggtaaatattattatata<br>cattttgcaaatgaggttgctgaggctcaggaagaatgaatgcaatgcctaaggtaatatagctagtaaatggtagagccaggattt<font color="green"><u>AAAACTGTGCCTG<br></u></font><font color="red">GTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCTCGTCTCT<br>ACTAAAAAATACAAAAAATTATCCGGGCGTAGTGGCGAGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCG<br>GAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTGTGCCTG</u></font>agcca<br>gaagcttactatatactgtgctgctggtctccctagataggttgcttcctcaaaaatgtggtggcttagacctaagccttgggaccatcttttgaaggtg<br>tgtctcttgaaaacttgagagttttggcctccatagtaggtccaatcactatcttagacagcagcaaggcttcattttccctgatcttttctgtggtctt<br>aatttaaatttccctctgttctaataagactttacttacccttcctatatctaggacaaatgttctatcttttgagaaattgatcttagctactatctga<br>ccaggatcagaaaagtctgtctcttctcatttgattacacagcaccctttgctctagtgcttacttcctagcaatcctgctg	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID:14604797</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrX	138769645	138769951	1000764	0	+	Ya5DP77; RIP_Alu_chrX_138_01	GAAGGATGATCTCTCCTTAC	TGCAAGGAGAGTTGGCATAA	SINE	Alu	Yb8	tatacatgtattgaaatatcactctataccccataaatacattatgtgtcaattaaaagttgttataaaaaaattaaatggaactttccatcaggattag<br>atttacccatgtgttatgtcaaattcaaacaaaaaagagctaagtattcctacaactagacaaatattgcaaccttaatgtgttaccagaaggcagacat<br>attcaaccctcacgtaaacagtaaaaaagagaaaacctttatgaaacggaatgaaggatgatctctccttacaaacacaattttgcataatgcatttgtg<br>tctagttacatggaaaatggaaccaattgtttaaagccagaagggtatataaatgccaattttcaacaatatatatggcacaaat<font color="green"><u>GAAAAGAAAGTGCTT<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGAAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>GAAAAGAAAGTGCTT</u></font>aacaaaagaaaatggaaaaggcttttttaaaacagaatagagttcattagacttttcatgactataattagaaaagat<br>atttctatgttgctataggtagagagatgcagcaagagtaaaactgcaccatttatgccaactctccttgcatagtgactgcaacttaccaatgaattat<br>ttccaatctaatttaccatttgaggacttgaaatagaaaatttaaaaaaacagatatacaggttttaagagataggagaaaagaatacccttgaagaaaa<br>gcacggatatctaattttacaaagcagaatattttcaaatgcctgtttctgggtctcatatatcctgtacctcatttgaggttcgaaatgtgttacttca<br>aaataat	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID:14604797</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chrX	119527354	119527652	1000765	0	+	Ya5NBC37; RIP_Alu_chrX_119_01	GCTTGAGGTTTTCATACTACTCTTATCTTT	ACTGTATAAGCATTTTCCTCTTTATCTTTC	SINE	Alu	Yb8	gcgagactctgtctcaaaaaaataaaataaaataaaaagtacattttaatgacgtgctttagaacaataaattagaaattaaattagcagaatgttctag<br>tgtatactagagcctgatatgcccaaaatactcattcctagatgacagaatctagtgatctgttttaggtaggaattatatatactggtttgaaataatc<br>ttttcttgttccttttaattgcaaaggaagtgactctccatttattagttcctacacgagagtagggtgaaaaggctaatagaggcctcatgcattcaaa<br>gaggcttgaggttttcatactactcttatctttggttaaaacatttgacctgtttatatctaatttcctcttaaacaatcacatgc<font color="green"><u>AAAACCATATTAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAACCATATTAAG</u></font>taggatacttgaaattcctgaacattatataaattatgttaaaaatttaatatgtttgaaagataaagaggaaaatgcttatacagt<br>tatctttctgcctcataatccttaactcaaagaggaattagaaataaacctttgaaagatgctaattccatagtctgaattgctgcttgtgttttaggac<br>agaagtctaattcattatgtaggcctgattctaagaaaatttgtctttgcttctcacttgtgttatcttttaaaaatccagcaaattccatactgccctt<br>ttaggtataatgttaaccattacaaataattttttttttaataagaagtctcacactgtcacccaagctggaatgcagtggcatgatctcagcttactg	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID:14604797</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrX	105077829	105078115	1000766	0	+	Ya5DP57; RIP_Alu_chrX_104_01	TTTTGTGAAATACGGTGCAA	TTGTATGGTGTGTGTGAGGGA	SINE	Alu	Yb8	agtgccacattactatctagccattatcaattggaatgtattcattcatagctccttttagatgggatatgtgctctacattctctacccatttatgttt<br>atatatttataataactgaccataaagtgtatttgattttgcagtacttgctttagtttttctgcacttcacaatgcattaacaaatttttaaaaaatac<br>aacaccagtattgcagcattattatgtgtattcctattctttattatattacctcaacagtgacataacagcaaattatcataaaatgttctcttatctg<br>gttaattatagttagaatttctgatcaaaagattcagcattttaaaagcagatactcctcaactcttaaatgcttatattttgt<font color="green"><u>GAAATACGGTGCAACA<br></u></font><font color="red">CGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTA<br>AAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTCCTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCT<br>TGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGAAA</font><font color="green"><u>GAAATACGGTGCA<br>ACA</u></font>tctaaaatatagattgtcataaaaatattatacacatcatttacataaagagtttgaacataatgtaatatccctcacacacaccatacaaaatata<br>attctactgtgtctcaaatttgatgttggcaatgatgtttgtcctattgaaatttttatttaaaaggaaggcctaaaccaacagttctctgcttcactat<br>atttaaattcccaatttttagacaaccaaagttttagcagtttagcattatacaaaaagtccaggagaaaactttgatgtattttcaaattactacagtt<br>gtgtgatattttgaacagctctcagaattgtctcatatgtctctaacaaattacataaaccaattgtcaggacattagtggggacaa	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID:14604797</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:NRK:NM:198465:26/29
0	chrX	127572772	127573077	1000767	0	-	Yb8DP49; RIP_Alu_chrX_127_01	GACTAGGGGTTTGTGCCAGA	TCCCCCATTTCTGTTGTTGT	SINE	Alu	Yb8	tgcaagtgaatctgaaataggaccaagcttatgtgaaggcacaatgaaaagactactatgagagttagggtcaatctcaaaatctcactctcattttcct<br>tgccaataagtgtgtaattccccactattagtcactaagtagagccaaggcattgaaactaagttcacagaaattgctttttaaagaaagaggatttgca<br>atagggcttcaaagttaaacagaattgcctgttttaatgagaaatgaggtaacgaagtttttgaaaggcagagtaatttaatgaaaatggaagtctagga<br>catgttagatagtcgatgtaacacacgatgttcttgactaggggtttgtgccagagaagcatggtgaaatggtaaagaacttgattgaaagttag<font color="green"><u>GAAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>GAAAA</u></font>gtagatgagagggaagagtcaaagctgtcttaaaagtgtccgatctgattaggcaaatgatattgacaacaacagaaatgggggaatag<br>agagaaaactaagtgaagaggatgaattgtcagtgaaatggaagaacaatgaagatgatacaatactctgttgggacatgaacatttttagaagagagtg<br>gacaaccatgctgagattattgtaaactgagacaagcttaaacaaaaggatgcagtatttagacggtgaagtcattaaaaacatataaacacatgtagac<br>atatatgtaccaggtattttcttctccattatgtccaatattatctctggatgaatggaggactcaagacatcatgatccacataggaactctttggtat<br>accttt	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID:14604797</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chrX	143650986	143651278	1000768	0	+	Yb8NBC578; RIP_Alu_chrX_143_01	TTTTTGCAGATGCTTCCCTA	CCCTTGATCCAGATGTGATG	SINE	Alu	Yb8	cttgcccaaggaagcacaaattataaatgacaaagacagaatatgaatccatgtctacctggctccaaagacattatatacctcatcacattcgtaagca<br>atgattttatcactggcttcaataatttgatattgattccctcccaatgcaggtcaccgagtcttcatacacagaaattattcttcactcatggccccag<br>ctgcgtctcagtgaatttttttcccaagaagacgaagcagagtaataggctacacataggctacacacttttctttctgcaaacaaaatggtaagggtga<br>aatctttctctttcaataagggctcaagtaatactctctcctttgaaagtgaaaatgtttttgcagatgcttccctactcttcttc<font color="green"><u>AAAAAGAGATTTGT<br></u></font><font color="red">TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTA<br>CTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGA<br>GCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGA<br>GATTTGT</u></font>gccatctgctcatcacatctggatcaagggtagtatgtctaaagattttttttcatttcattaaaaacaggaaggaaattttttttagttccc<br>aattgtgaaattatataatttcaacctttacttaggagtgctcagttacaactatcagtggtatctaactttgtcgtattctcacaataaaataaggatc<br>ttcttgttccagatacaaagaggcaacatgtagagtaaactgtgctggctttaggtaagacaaaactgactggagtcatggcctgactgccttactatga<br>gaaagctgtagaatcatcacacgagaggttagaaagtaatttattttcacttctcttgtctgcaaatgagaaaattgaaaccaataatgggta	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID:14604797</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chrX	93451643	93451950	1000769	0	-	Yb8NBC634; RIP_Alu_chrX_093_01	AACAGAAAGGCATCATTTGC	GGGGGCATTTATTACTGCTT	SINE	Alu	Yb8	tacctaaaaaaggatctcatagcaccatgtacctcccctgcatagcacctatcacatatgcaattttatatgtttatatgaatccttgattaatgtccac<br>attttttgtagaatgcatattccataaaggcaaaagctctgttttacttaacattgtatttttttgcacctagcatttcctgatacctaatcagtatttg<br>aaaatatttgttgaacatataaatgaatgaagacatatagaagttttacctactcaagaccatggcagactatatgttccttaagagcaggaacgatgca<br>cttatctgtaaatccatggtggcttggatttttttttgagggggggggcatttattactgcttagtatataattgctgccttt<font color="green"><u>AGAAAAACAATCCCATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AGAAAAACAATCCCATG</u></font>gcccatctaacaagaattgcaaatgatgcctttctgttaagtcttcaagtagaaaattttaaaaaagaataagga<br>agaaagaagagcaaattagcaacaaagaaagtaccagataattcacagactaccacagtaatgtggaaggcagaaatattacttacagacacagatttct<br>atatattttagtgaatagaatgtgctcaataaacatgtcaattctattatttcaacaaaacctattaagtatatcctcataagcatcacagaggttttct<br>taacgggtgattatttttggttcaaaagaagcagcctcaaaaatttctgtgctgtgaacattgtcaatacctcattcttagcacttaccatctctgtgca<br>caccagcc	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID:14604797</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chrX	45472492	45472493	1000770	0	-	Yd3JX437; RIP_Alu_chrX_045_01	TGGTGTACCTTAGTCCAAAGACC	TTTGCATCTCAGAACTTTTTCCT	SINE	Alu	Yb8	ggccgggcgcggtggctcacgcttgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtcaggagatcgagaccacggtgaaaccccgtc<br>tctactaaaaataaaaaaaaaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcggagaggctgaggcaggagaatggcgtgaacc<br>cgggaggcggagcttgcagtgagccgagactgcgccactgtactccagcctgggtgacagagcgagactccgtctcaaaaaaaaaaaaaaaa<font color="green"><u>AAGAAATA<br>AACCTTC</u></font><font color="red">AGTCTCCTGTTAGGATGAAGTAGGATCATTCTCGACTGCTTTGAGTGGAGGAAGCACTTTGGGACCCCAATTCTTCTTAAACAGATTTTCAGT<br>GAAATCTCCTGTTTTTAGCCTTACTTTAACCAGCATTTCTACAGCTGCCACCAATTCCTAAGCTGTTAGGAAAAAGTTCTGAGATGCAAACTGGGTTGTT<br>TCTGGTTTTCCTGCTGCTGGCTTAGAATTCAGCTGAGTTGAGCCTTTTAGGTCAGTTACCATCTATCCATCTGTTTTCTGGCTTCCATAAATTTATTACT<br>GTTG</font><font color="green"><u>TCTTCTCTCTC</u></font>ctttgttcttgtgactctatgacagatgtaaatgtgtttgttcagttggtcattgttattcagaacagtgctctccttttaactt<br>aaattcatgataata	Other	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID:14604797</a>.</LI><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID:15008405</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	547	240	NA	intergenic
0	chr7	103974638	103974951	1000771	0	+	Yb8NBC201; RIP_Alu_chr7_103_04	GGAGAAAATGTAAGGTTTCTAGCAC	ACCAATGCAACTATCTACACTGACA	SINE	Alu	Yb8	tccctcattgtaatgtgagtgacagtgtttaattcattgtagtacaaattgttactattgctaatgttcttaatatagcacattaaattaaagagtcact<br>gtagctgtacaaaatcatatagagagctcaccactttcaattaattcggggatcctcccaaggctgcataactgagctgggagagttcttcctttgtcac<br>tggagacctgggttgaaatcctggagacctgggttcaaatggcttgctgtgagaaagttacatgaccttgaacattactctgagccagttttctcttctg<br>taaaatgagaataatcatctaagcctgttaatgggatttaggagaaaatgtaaggtttctagcacaaatgttaacaagctctt<font color="green"><u>AAGAAATAGTAGCTCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATAGTAGCTCAA</u></font>aatatgtataatcaacaataattaatcatcctacttctaagtggaattaatgtattcatctgtcagtgt<br>agatagttgcattggttacttcaaaacactcgaggggtagagggtagttctttttcagtagagcagtatattccaggggttgaaatctgggcttgggacc<br>acgagaattatagagtatgagtaatcaatagtgatgtagtccagggtgatccttgaggttgcagtcaattaatataaaagcagttttaatataaaacttt<br>aatataaaagcagctttcgtgcatgtgtatcctatataagtcatggttgctgatgatggcagaggcagactgggttctccagctgtccagagagccatgt<br>ttctgtaccctatt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	476	145	NA	intron:LHFPL3:NM:199000:1/3
0	chr2	39446081	39446388	1000772	0	-	Yb8NBC189; RIP_Alu_chr2_039_01	GGAAGATTTGAGAGTGAAATACCC	ACATCATGGCCTGAACTAGTTTTTC	SINE	Alu	Yb8	gttctcaggtctcctgaggactctttcatgggccattggtcactcatatttggctcagaataaatctcttcaaatattttacagagtttgactcctttca<br>cgaacaactgaagtactgttaatttcatttattgtttctaccatatgaaatggagtttagaaattatgtattttgaatgacaccacacatgaaattaaaa<br>gttaatttgaaattgactttaaaacacttttacatgtaacgtagatgtgtgttctcacttctctgtgtttaaaatagaatggaaatgggaagatttgaga<br>gtgaaatacccataacaatggcatgagaaaccttgttgatttttcgtagtctaagcttacatttttctcttggctataggacatttt<font color="green"><u>AAAAATTACTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAATTACTATG</u></font>gcgtaacccaaaaataaaattctaagccccccaaccgactgatggaggctctcctcagccaagggcattccaaagttaa<br>cctgaaaaactagttcaggccatgatgttaccatcataatgagactccgacatcctcattataccctcctccctttggaattcaagctcagctgaccaac<br>attaacatttaaatagagatcttaagactagtgaacagactttttatagcaataagacacagaattccagcctgactctagtatagcatcacatgacaga<br>tagcaggccctgaaagaaatagaagtattttatcccaagtatatttctttgatatattttgaaatggtcctgcaaagccgtctcttgtgggggaaatctg<br>tattctat	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	67	541	220	NA	intron:MAP4K3:NM:003618:2/34
0	chr12	15514701	15514702	1000773	0	-	Yb8NBC77; RIP_Alu_chr12_015_01	CGGAATGTTCTGAGGATCAAA	GGAAGCTCTGCACAACTCCTA	SINE	Alu	Yb8	gtctgccccagcctgtaggctgccaggttatagcccttgaattccttgcactgccatttccttgaccattactcatcttttgtccttcagtttctagatc<br>atactctattttcttggcccaaccagagtgtaggtgatagctaaagtctgtcaccaattaagcattaatttaaaataagtacaaatgatattttctcatc<br>aagttgccatgtgtgcatgtgtaaaatgacagttcaatatatataataatgcagcaattatttcctgacttctaaaatgaactcaggctggaagctctgc<br>acaactcctaattttggagattaaacaaaacacacttgaggaaagaattcaacctgccagttttaagtgaaaagaaattgttctgcc<font color="green"><u>AAAAAGAAGTGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCGGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGAAGTGCC</u></font>aagattttatgtgatatgtagggtaataataatagtcatataccaaattttatattttagaaagcactttc<br>aaatatattttctcctttgatcctcagaacattccgttaagttactgtctcaattcacagaagaagaaactgaggttcaaataattaaatggatttctca<br>aggctaccctattatattgtggaggagctagtactcaaggcaattcttataactacagattttgtgactctattgtactacagtccccagactgtaagat<br>cctggagccaagatgatttcccaaatgctacctttcatatctgtacttaattggtggcaagttccctcagcacaaactgtgactgacttcttctagaata<br>tgcctgataaatcctc	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	547	218	NA	intron:PTPRO:NM:030667:1/27
0	chr12	96078873	96079186	1000774	0	-	pAlu12-97487591; Ya5NBC147; RIP_Alu_chr12_096_01	TAGCTGGGGGAGGTAGATAATAAAC	AAATATCACCTTATCAGTGGGACCT	SINE	Alu	Ya5	ttacaatagcctcccatctcatctccttgccctataaagtctattttcctcacagaaaccagaaaaatccttcgaaaacataacttggatcatattactc<br>ctcaagaccctccaaagtcttccccatgtgtcctggagtaaccatctagccccactccttccatgatctcacaccctcctcactcccctcctcaccctgc<br>ttcagccctactgggttcttgttcttccttgagcaccagacaagctccccgcttctggcctttatacccactgtttctgtgaatggaatgctttctcaag<br>acatccatttgatttcctccctcattccctctagtctctgctcaaatatcaccttatcagtgggacctgccctcattatctcattt<font color="green"><u>AAAACACCAAGCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAACACCAAGCTC</u></font>cttgtccccatctctctctgcctccctacttgctttattttgcctcctaacatttgatgtataatatattta<br>ttaacatttatgtttattatctacctcccccagctagagtggaagctccctgagggcagaaaaattggttgaaacactgctttctccccagtacctagaa<br>taggcatgggcacatagtagacactcaagttgttgaagaagaagaaataaagccaagtcgaggtaccaggatacagtactggttgtgttgcattacatgt<br>atttgtttgcacagtcagagtttcaggctttgggagaaagagccctgtccctagtgtgtaataaagtgttcattcagcaggcttggagtgtttaaaccct<br>aaacattccagagg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr14	106025447	106025757	1000775	0	+	Yb8NBC100; RIP_Alu_chr14_106_01	CGCAGGTGCAATAATATGGA	AATTCCCTCCAGGTTGCTGT	SINE	Alu	Yb8	gttacatgagtaatttctttggtgatgatttatgagattttggcgcacccatcaccccaacagtatacactgtacccaatttgtagtcttttatccctca<br>gcccccctcatctattccaagtccccaaagtctattgtatcattcttatgcctttgcatcctcatagcttatttcccacgtatgagtgagaacatataat<br>gtttagtttcccacttctgagctacttcacttagaataatggtctccaattccctccaggttgctgtgactgtcattattttgttcctttttatggctta<br>atattccatggtaaatatatacatatatacacatatacacgtatatatgtacatatataaaaaatatgtatatatagaaaatat<font color="green"><u>AAAATTATATATATAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCAGAGCTTTCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCCCCAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAATTATATATATAT</u></font>ataatggtgtgcgtgtgtgtgtgtgtatcacaatttctttatccacccattgactgatgggcatttgggcccg<br>ttccatattattgcacctgcgaattgtgctcctgtgaacattcatgtgcatgtgcaagtatcttttttgtatggtgacttcctctgggtagatcccagta<br>atgggactcctggatgaaatatttgttctcctttttttctttaaggaatctccacactgttttccatggtgtttgtactagattacattcccgccagtgt<br>tcccttttcactgcatcatcaccaacatctatttttttattttttgattatgactattcttgcaggagtaatgtggtattgacttgcatctccattgtgg<br>ttttgatttgc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	574	247	NA	intergenic
0	chr14	80666807	80667112	1000776	0	+	Yb8NBC148; RIP_Alu_chr14_080_02	CCAGGCCTCCATCTTTGATA	TCACTTTTGGGCATGTCAAG	SINE	Alu	Yb8	aaaactccgtttaccaggtcaacagtgacttccacaattgctaaatcaagtggccaattagtacttatttcagaggcatttgactcagttgctgactcca<br>tcctccttggaatgtattcttcttttggcttccaaatcactactctctcttggtttttctccatacctctgattgttccttcctactctgtttttctagc<br>tcttcttcttcttcttcctgatctcttaatgttggagtgccccaggcctccatctttgatattctttttatctatatcttcattcacttccttggtgatc<br>ttatccacttgtatggatttacctaatgcctatgatacccaaatagaaatctccagtccagacaattctcccaaattccacgcttat<font color="green"><u>AAAACACTGCTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAACACTGCTTG</u></font>actgccgtcaccatctggatgtctaataggcatctcaaacttgacatgcccaaaagtgaatttctgatcattccctccaaa<br>cctgcctcacctgcagccttccccatctcaggaaatggcaacttcattctcccagctgcagactagaaatcttggagtcattctcaacccttctctttct<br>cacataccccatatcccatccatcagaaagtcccaatggctctacttttcaaatatctacaaactccaaccattttcagtatctccactgctaccaccct<br>agtccaaagcaccatcctttctatttttgatctccctgtttccacgccttactcactttggtaactttcaaagcagcagccagcatgatcctttttaaat<br>aagtca	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	537	218	NA	intron:TSHR:NM:000369:8/10
0	chr16	31968316	31968629	1000777	0	-	Yb8NBC10; pAlu16-33001116; RIP_Alu_chr16_031_01	CACGACAACACGTTTACCTCA	TTTCCTTTCAGGAACGTGGA	SINE	Alu	Yb8	ggaatagtcacgtaggccttaatctggcttagtgaaataatagagcaaagggagcaatcagatatgcatttgacttacatgagcagagaaatgactctgt<br>ctgtctttggcccacaaggattttacttgtggtcaaattttgaaggaggtctgtagcttttaaaaaccgtagtagctatcattttagtgaaataatggag<br>gtggatttaccccaaacagttttcagcttgacttcccttgggcttagtgatttggtggtcccaaaggtttattttcctttcaggaacgtggaaatcttga<br>aagaaatgagttcttgtagagagaaatgaagccatagtgttagctaaactgaggccgaggctgccacatgaaatatagcctatt<font color="green"><u>ACAAGACAAAGCTACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACCAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAATAAAAA<br>AATAAATAAATAAA</font><font color="green"><u>ACAAGACAAAGCTACA</u></font>aacgtgttggattgcttaaattccagtgtggtaaacgtgttgtcgtgtaaaattctcaggaaccacatac<br>tgaagggcactgataaagtgaattaaatatggcctgagaaggactccgtaattctgtgtttgagtccttctggacaaactgtaacctacctgaataggtg<br>gacaagattgaaaagccaacttcagagcatgagcctgtaacaatagcggagtcttggccaattccagcagccatacctcaaccactcatacactcttgag<br>tgtgcacattttgtttaaataagacaaaaacaacctgtaaccaatccagctgtttctgtacctcacttctgatttctgtacatcatttttctaatctata<br>aaccttcttccacc	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	505	165	NA	intergenic
0	chr16	26515539	26515866	1000778	0	-	pAlu16-26535378; Yb8NBC13; RIP_Alu_chr16_026_02	TCTGGGTTTCTCTGGTGGAC	CTGGCAAATGCTACCCAAGT	SINE	Alu	Yb8	gaggctgggcatggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtgggtcacaggtcaggagttggagaccagcctgatcaacatg<br>gtgaaacccagtctctactaaaaatacaaaaattagccaggcgtggttgcacatgcctgtaatcccagctactcaggaggctgaggcaggagaatcgctt<br>gaacctgggaggtggaggttgcagtgagccgagatagcaccattgcactccagcctgggtgacagagtgagatcccatctcaaaataaaaaaaaaaaaag<br>caagtggcgaaacctggcaaatgctacccaagtgatgaatgccaacctcactgaggaagcctggtggctctcatgcagccttggat<font color="green"><u>AAGATGTGAAGAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTTAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATGTGAAGAGG</u></font>aagatgcttcagttttgtggtgttcttcccccaaacccaaactccagtctactcatga<br>gaagtccaccagagaaacccagagtggaggacattctacaaaatacctggccagtatccccactaggacttccagggtcatgaaaaccaaggaaagactg<br>agaaatggacacatcagaggagactggggagatgctacaactaaatgcaatgtgataccttggatcagatggtggaacagaaagaggacatacatggaaa<br>gacagatgaaattgtaattaagtccagaatttagttaataataatgtaagaatgttggtttttcagttgtgacaaatttactcaggttatgtgagatgtt<br>aacaagaggagaaaatggctgggcaaaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	510	168	NA	intergenic
0	chr16	81561491	81561771	1000779	0	-	Yb8NBC146; RIP_Alu_chr16_081_01	CTCTTCTCTCCAGGAAACGTC	GGAGCTCTGCCTTACACTCAA	SINE	Alu	Yb8	aattaggccagtatgccccagaatggtaaaaggaaaggatataggtggagcacctacagtgtctgctatggattttgcaacctagtctatgtgaaacctt<br>ttaaacatttatttgtacattcaacaaatattttaaatgtgcctgcactctgagtaagtactgaagcactgggcattggaaggtaaaaaagtgctcttgc<br>aataattttaataaaatttcaaaggtaaaacaagtcattatagtcattatagttaatactaatgaatgctctaatagggaaataatagaggggactttgg<br>taaatacagcactggaacttaatctattatgcagatcaaggagctctgccttacactcaaacaggtaaggtttaagctgagccctt<font color="green"><u>AAGAATATGCACTG<br></u></font><font color="red">GCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGTGGAGCTTGCAGTGAGCCGAG<br>ATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATATGCACTG</u></font>ttcac<br>aatagcaaagacttgaaaccaacccaaatgcccatcaatgatagactggataaagaaaatgtggcacatatataccagggaatactatgcagccataaaa<br>aaggatgagttcctgtcttttgcaggatcacggatgtagctggaaaccaacattctcagcaaactaacacaagaacagaaaaccaaataccacatgttct<br>cattcctgagtgggaggtgaacgataagaacacaaggaaacagggagggaaacaccacactgtcgatgggtaggggtctaggggagggatagcattagga<br>gaaatacctaatgtagatgacggattgacagatgcagcaaaccaccatagcacgtgtatacctacgtaagaaacctacaag	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	887	592	NA	intron:CDH13:NM:001257:2/14
0	chr16	2042236	2042237	1000780	0	+	Yb8NBC230; RIP_Alu_chr16_002_01	CAAAATGGCCGTGTTCTTTT	GTGTCCACGGATCTTTGCAG	SINE	Alu	Yb8	gtggatggatcacctgaggtgaggagttcgagacccgcctggccaatgtggcaaaaccctgtttctactaaagatacaaaaattagctgggcatggtgtc<br>gggcacctgtaatcccagctacttgggaggctgagggaggagaatcgcttaaactcaggaggcagaggttgtggtgagctgagattgtgccattgcactg<br>cagcctgggcaacagagcaagactgtctcagaaaacaaaaaaaagaacaagcgtcctgcatcctgttctgaaagttgtttgtgtgggtacggggcagcct<br>gtgagtggataaataggcctccgaggctgggatggtcccgggccctgtgtccacggatctttgcagctcaggttgcaacggt<font color="green"><u>AAGAGTATTGTCAATGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTATTGTCAATGAG</u></font>acaaaggaggtgagagtgccagtggttgggatgttggtcagatgacatctaaaagaacacggccat<br>tttgttattatttggttagagacaaggtctcactctgtcacccaggccggggtgcagtgtcacaatcatggctcactacagcctcaacctgccaggctca<br>cgtgatcctcctactttagcctctcaagtagctgggactacaggcatgcagcaccacgcctggctaagttttgtattttttgtcgtgacagggtctcact<br>gtgttgcccaggctagtctgaaactcctgggctgacgtgaccctctcccctctgccacccgaagtgctgagattacaggtgtgagccaccgcacttggcc<br>ggaacacggccatttt	Other	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	62	458	124	NA	intron:TSC2:NM:001077183:3/40
0	chr17	14903686	14903992	1000781	0	+	Yb8NBC24; RIP_Alu_chr17_014_03	AACACTCCACCCAATAACTG	CATCTCTTCTTTACCTGTTTCC	SINE	Alu	Yb8	ttagcatacattcaatgacagctttaaaatgcatttgaaaactttaataactgaaaagaaaataaattcataatttctgttggagatttaacattcttca<br>tttaatagccaggtaagaacaaatagatcaaaaatcagtaaggatataggatacttgaataaaaagattaaccggtgaatcagatagaattggcatttgt<br>agaacactccacccaataactgcagaatacatatttgtttcaagtacacatgaaatattcactaagataagccattttttggccataaaatgaatctcaa<br>cagaattaaaagtatttaaataatatagtatattctctgatcacgacaaaattaacttagatattaataactgaaaacgtatct<font color="green"><u>AGAAAATCCACAAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGA<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AATAAAA</font><font color="green"><u>AGAAAATCCACAAATA</u></font>ttcagaaattatacaacacacatataaataatccacctattttaaaagatattaaaaataaaattagaaaaattatt<br>gaactgaatgaaaataaaaacatagcatatcaaaatttgtaggaaacaggtaaagaagagatgagagggaaacttatgtctttaattgtgtatgttagta<br>aaatagaaacctctaaaatcaatatcctaaacctctcctttaaaagccacaaaagataaatttaaatttagtaggaagaagaaaataataaagatgaggg<br>tagatatcagtataatacaaaattttatgaagaggaaatcaaaattggttttttgaagaaatcaatggaattgataaatttctatcaggattaataaaga<br>aacaaag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	56	661	338	NA	intergenic
0	chr17	64060402	64060716	1000782	0	-	Yb8NBC227; RIP_Alu_chr17_064_02	AAGAAAAGGGAAGCCTGGAG	CAGTCATCACCAGCCATGAG	SINE	Alu	Yb8	actgctcttaagaaatgcctgagactggataatttataaaggaaagaggtttaattgactcacagttctgcaggcttaacaggaagcatggctaggaggc<br>ctccggaaacttacaatcatggcagaagggggaggggaagcaaggcacatctcacatggtggcaggagagagaggatgcaaagggggaagagccccttat<br>aaaaccatgagatctcgtgagaactcactatcacaagaacggcacaggggaagctgccccatgatccaaccacctctcacagcatccctccctcagcaat<br>ttgagatgagatttgagacaaggggattacaatttgagatgagatttgggtggggacacaaagcctaaccatatcactaaggttt<font color="green"><u>GAAAATAAAGGTTTA<br></u></font><font color="red">GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAGGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAG</font><font color="green"><u>GAAAATAAAGGTTTA</u></font>cagggctccaggcttcccttttcttcagttaagcacctgccttgaccattttatagaacacaaggtgagt<br>gaggtattgtcctgaccctccagaaccagggagagggtaagagaagtgaggtgcccaggatgcaaaatttaaggaagtagcactccctgcacctaagaag<br>cactcacttgccaagccctggtcccagcccaggtgtacagtcttaagtagaaagaggcataaacaaactagtctaatataacagaaggcataattagaat<br>ctacaaagatgtagttgaaacacaaagaggaaagggttcattcttcttaggaaaacattcttcagggttttcagtaaatgtcttcattgtattttttgct<br>cttttcccataccag	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	881	546	NA	intron:FAM20A:NM:017565:3/11
0	chr17	58095056	58095351	1000783	0	-	Ya5NBC157; RIP_Alu_chr17_058_02	CATACGTTAAATCACTCGGTACTCA	TCAGAAAAGTATACAGGTGATGTGC	SINE	Alu	Ya5	agcgctgggcagggaggctggtattgcaagccggggtgactctgacctgcccgccctgggcctccaggcagccctgcagtccatggctgaagatgaggaa<br>gacgttgggttctggaagggaaggcaagacacgaaggcatcacaggggctctcctggttggcccttgatgaccggtgtggctgacaggcacctaccatgt<br>gcccagtgcaggatggtgagccgtcactcatacgttaaatcactcggtactcactaccaaccctctgaggtggaaatgagtggcagtgctaagcccttgt<br>gcccagatgaggcagaggcctgcaggactacctctgttctagcccctgctcaccaggagggaggactcagtcctctgtaccaccctc<font color="green"><u>AAAAGCAAACCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>GCAAACCCA</u></font>actccacccggcacatcacctgtatacttttctgaagattttatgaggaggagtggaggcatttacaccacacaccacgttgcaacctcaa<br>tctcaatctctattacatggcgtggtttttctgccaaaattctcctttgatccggaggcattgtgtctcacccttccccctgccccttgcactggttcca<br>tcctttccttcttctaggatcttcccagaccactcatcccacccctgaactatttcacgccttaatttttacgcagcaatttaattctttggcttcctca<br>acctttcctctttccacctatctcctcgctgagcaggcaccctctgtagaagtcactgggggaaatccaacctgccccccaccacagcacacccac	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	516	207	NA	intron:MRC2:NM:006039:1/30
0	chr18	24081891	24082207	1000784	0	-	Yb7AD39; Yb8NBC80; pAlu18-25715783; RIP_Alu_chr18_024_02	ATTTCACAGTGCCCTGTCCT	TCCAGGCAGATGAATTGACA	SINE	Alu	Yb8	ttttcaaagaaaaaaattattttgagacaggatctcactctgtcacccaggctggagtacagtggcaatcatagctcactgaatcttcgaccttcctgac<br>ttaagcaatcctcctacctcagaccccaaggagctaggactgcaggtttgtgtcaccacatctgagtaatttttattgtttatatttttagaggcgaggg<br>tctcactatgttgcccagactggcctccaactcctggtttcaagcaatcctgcctccttggcctcccaaagtgccgagatttacaggcatgagccacaga<br>gccaagcctttcaaaattttttatctgatttcacagtgccctgtcctgataatctagtaatcctcagcatgaactcttggctgt<font color="green"><u>AGAAAAACTTCATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGCAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAACTTCATCTT</u></font>tttttttttttttctctgctaccacacacctgtcaattcatctgcctggaatgatctctctggaatt<br>tttctctaccttacatcatttttctattttaaagctcatcattctcactctgtttatttcaacctacacaggttcttttcttacatgtactcctataata<br>gtccacaacttctcgtgtatgtacattctctactgtattgttttccaacttttattgttacctatattattaaatcttcagtcagacgagatgttgcttt<br>aagtgaaaagaactcttacatttttttgtaaacgttccacaacaccccattaatgctaaacatatagatatctcattttgaatattgcattaatgaggaa<br>gtcatgcctagtttatt	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	NA	NA	NA	intergenic
0	chr21	9991028	9991309	1000785	0	+	Yb8NBC18; RIP_Alu_chr21_009_01	TGTGGTGTGGGCTAGAGGATG	TGGGACTCAGATTTCTGATAGGA	SINE	Alu	Yb8	tcctacgaactgacctccttatacaactccatcaaaaaaaggtgcaaagttatctacaaatgctacaatgagaagaattggaaaccctgttaaaaaacac<br>tctgtatggccatgcaggctcctgagagtaaattccacaaatgtccatctgtctccgtgttttgtgtttccattttgtgcatgggtttgtttgtgtaaat<br>gtgttgacaaaagtgtgtatggatgaagatggatggatatatttgtgtatgtgcttggtgtgtgtatagctctatgcactcttatgcatacgtgtgtctt<br>catgtatttataactcacctttcactgataggtgacacccgggctgctcctttaaattcacttgtgtgtgggctagaggatgat<font color="green"><u>AAAAGAATACAGTCAG<br></u></font><font color="red">CAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAA<br>AAAATTAGCTGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAG<br>CCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAATACAGTCAG</u></font>at<br>aggagacgcgattctaaatttacttttttggaaaattagcttttattactctagacagaaaccaatgaattcctatcagaaatctgagtcccataaaaaa<br>actgcttagtaggaactaagggtggcaaatacattacaggaagaagcaagtctcctacgacctgctcctttttatagagctccaccaaagaaggatgcaa<br>agttactaacaaatgctacaatgagacgaattggaaactctgttaaaaaaaaaaaatctctatggccatgcaggctcctgagagtaaattccacaaatgt<br>ccaccagtctcctttctctttggtctatgtttccatcatgtgcatggattagtttgtgtaagtgtgttgaagagacgtgtgg	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	56	431	133	NA	intron:TPTE:NM:199260:6/22
0	chr21	32389722	32389947	1000786	0	+	Yb8NBC26; RIP_Alu_chr21_032_01	GGGTCCCTCTCTGAAGGTAAA	TTTTTCCTGCCAACCAACAC	SINE	Alu	Yb8	agaacagtgaaatgaaaggaagttggatccctgtatgacctgccagatcagagcagctgccctccatcctctctcccgaaactgccctgttcagctcaaa<br>ctttaaaggagagaaaaatgaacattccatcttgtttaagtcactcttattttcatctctgctaaagcaactgaaccaacatatacaaactggatcaata<br>agtaatttgcgctgtgattttgcttactatcatgcacatatattggtgtccaaaaaacatgagtgtgaaatcttgtcaaaagtttgctcacatgttacct<br>gttttttcctgccaaccaacaccacacaccactttctcataaaggtcttcttagatccaggaagctaacccagaaccctttaaaaatgat<font color="green"><u>CATATTCTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTATCTACTAAAAATGCAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAC<br>AAACAAACAAAAAAAAAACAAACAAAAAAAAAAACACAT</font><font color="green"><u>CATATTCTCA</u></font>aacagctaatagaaaggtcaattcagagtgatttaccttcagagagggacc<br>ctcagagagaaccttgttttggggagttgtaagaagccctgtaggctctatgaccttatatctcagatttttaggacaattctaatttaaactattctgg<br>ctcagttcccacaaatgtatttgtaagtgtacttgccatggtttttgttgagaaatgtggtcgcagtccctacgggcccctcagctgattgtcatccctt<br>cgtgtcatcttgccctctggtcttcc	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	56	499	150	NA	intron:NCRNA00159:NR:024352:2/3
0	chr21	38014872	38015179	1000787	0	-	Yb8NBC36; RIP_Alu_chr21_038_01	CTAAGGAGAACGGGACAGAT	TATATTCTGGATCCCAGTCC	SINE	Alu	Yb8	ggattacatggtaattctatgtttaactttttgagggactaagatactgtttttcatagcagctgcactgttttacactcccaccagtgatataccagca<br>ttccaatttctctacatcctgccaacacttgctattttctttttttaaaataataaccatctaatagatgtgaagtggtatctcattatggctttgattt<br>gcatttttctaatgactagcaatgaagaatttcttttcatttgtttattggccatttggatatcttctttggagagatgtctattcaagtcctttgccca<br>tttctgaatgggttgtttattttttgttaaggtgtaagagttctttatatattctggatcccagtcccttatcagatgtatgact<font color="green"><u>AGAAAATGTTTTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAGAAA</font><font color="green"><u>AGAAAATGTTTTCTC</u></font>ccattctgtgggttgggggtgatttttgatgaggaagaaaccacacttctgtgtcactaagggcactgcccaaacaa<br>ctgacacttggttaaacccaagagaaagatgacatctgtcccgttctccttagctcactgtgacagcgcccccagcccccaggcctcctggacaccctcc<br>tccttcaaggtcccctggacagttacagggatagctgactcgacttgtcctataggtttcactcctcaagttgcctcaaacttgcatacattctcatttt<br>tccttctaattcatacccccaataaggaccctgtagggtttagttacgattttcttggattcaggtcaagcaaatgtctcagtttctaaattgtcagctg<br>tatgggat	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	506	183	NA	intron:KCNJ6:NM:002240:2/4
0	chr22	16427376	16427718	1000788	0	-	Yb8NBC120; RIP_Alu_chr22_016_04	CAGTGGATCTCCATTTTACCTCTC	GGAAAGGTTTCAGGAAGAAAGTG	SINE	Alu	Yb8	aaagttgtaagttactagccaatcaaaacaaatacaaaatataaagtcccattccagccaaaaaaaccagacagcaataaagtagacccatcaggttata<br>aacgaccctgtctcctttgttcagtatactctcgtgacaaaactgctagcaagtgtaccctttctgcagaaagtataaaaatggccttactaaaaaaatt<br>aaatttatattcaagtgctatttctttacggcaccaaggaacaagcattcctacaagtgagttgtgaactcaatgctgcttgagttaaggaaggtttctt<br>ggagttttggagacatggaaaggtttcaggaagaaagtggcaattgattttgggttggaggaaaggcaaagatgttgatggaatt<font color="green"><u>ATAAAAGCAAGGATA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>ATAAAATAAAATAAAATAAATAAATAAATAAATAAATAAATAA</font><font color="green"><u>ATAAAAGCAAGGATA</u></font>gagaggtaaaatggagatccactggcaaattgtctaatttgg<br>ggcaaaaggctgttaaaccacgttgggtctagatgaaacagggccctgctgccaggcgaaggatctgggagaggtgaagaatcagcactggatactttga<br>agtcagatgcacgttcagattccagctcctaaattatgaagtaatacactttaggcaagctactttagtgcttttttcataaaaggggaatgggacatcc<br>atgtaacaggattgtaattaatctgaaatgaggctgtagagtggacttgaaaataggattgcttttgaaacagtttgaatcttagtttaccgcttactag<br>ctgtgtgaccttaaacaagttacttgtctgtgttgcctgttca	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	532	212	NA	intron:SLC25A18:NM:031481:1/11
0	chr2	114079138	114079440	1000789	0	-	Yb8NBC126; RIP_Alu_chr2_114_01	AAAATGTCCCCTTTGTCCTTC	CCTACGCAGAAACACCCTAGA	SINE	Alu	Yb8	aggcacatagcttttcctctatagtttcttctagaaattgtatagttttgcatttttagtgtaaggatgattttgagtgattatttgtgtaagttgtaaa<br>gttttcatctacatgcatatcatttcttatggtttccaattaatcattccctcactatttttgggaaagacacaggatagtgggctctgttagagtagat<br>agctagctagacatgaacaggagggggagctcctggaaaagggaaagtctgtgaaggctcacctggagggaccaccaaaaatgcacatattagtagcatc<br>tctagtgctggagtggatgggcacttgtcaattgtggttaggagggagaagaggtacctacgcagaaacaccctagaacttctctt<font color="green"><u>AAGATGCCCCAATC<br></u></font><font color="red">GGATGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTGTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGAAGCCCCAATC</u></font>atcattcattctgcaataaaaatgtcagaatattgctagctacatgctgataagaaggacaaaggggacattcttaagagaaa<br>cctggcaccataagtacagattaaggcagagaaagacattcaaaagaggcagctgcagtagatacaaacgtgaccgctgtcagcctgcctggtatggtgg<br>gaaggaggctggtgccagagtggattcggattgatcaccacacatgtacctcaatcaagtgaggaggtcccacaaggctaagtggggcaagtcggggacc<br>taaggcagtagcaggaaaaccaaagaaaacaggcggagacttgagacagaggtaggaatgtgaagaagtccaaaataaaaatccctgcacaggactctta<br>ggc	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	438	118	NA	intergenic
0	chr3	187512318	187512639	1000790	0	+	Yb8NBC181; RIP_Alu_chr3_187_01	CATGTACCTTAGAATTCCACTCTCA	CCCCAAAGTTTATAGTCTGTTGTCT	SINE	Alu	Yb8	ggtaggagcatgttttgcattcacccagactgtcaggactatccacatacagttctgtcctaaatcgggtgttcagaaagtttttctctttgatcaaggt<br>taccagtgccctaagaagttttcagtccaaaattgtcttctatactttatgtgccaagaactctgggacctaaaccaagcactgttcctagtgtttgagc<br>aaattcaaagccttttaaagggaaaaatttggccctacacacagacacctttgttgccttgtcagtgtgggacaggggtgcgttccatctgaacaagcag<br>acaaatcagagacttcagtgtttacagcagaatattagttgtgctgccaggactagaccccaaagtttatagtctgttgtctagtt<font color="green"><u>AAGAACACAGAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACACAGAGTA</u></font>tttgagcattagaccattaaactgttaaactccgaaaaaactataaatcaacattttcaaaagt<br>gaatctgaaaatccatatatgagagtggaattctaaggtacatgataactcttcattcctcaaagttctctatgagcttctcaaactgtaatgtgcgtat<br>gagtcacattgggatctggtaaaaatgcagattctgtaggactgggccacagcctgagattctacattctgaataagatcctaagtgacaccaattttgc<br>aggttcacggacctcacttgatacgcaggctctaagcaatgtccctgtggatctggggctgactgctgaggcttgcctgtcacaacccagaaaagaccac<br>gatgccgaggacaaaggaacat	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:DGKG:NM:001080744:2/24
0	chr5	144577238	144577535	1000791	0	+	Ya5NBC16; RIP_Alu_chr5_144_01	CTTAACCAAAATAGTGGACGAGGTT	CAGAAGTATTTACTACTCGAACAGTGAGC	SINE	Alu	Ya5	gtgaaaataagtatattatgcatggttgactatcactttcataaaataaaaatttatttaaaaaagaattcactcctataaatctcttacttacaatcag<br>aaaacaaaatccttttaattatatgtctatgtcatcaattcagggatatgcatgttccttacatttcacttagtttaatgcactagtattaattacaatt<br>taagattaactcattctccacaaaatcaaaggtctgaaagagaataattttatttatttgcttcatattatcagaagtatttactactcgaacagtgagc<br>aaaatggtttactataaggttgaggctattattcatttagaattgaggtgaagatacaatactttgtaggcaaaaaaagcaatttagt<font color="green"><u>AAGACTGTTCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGACGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>GACTGTTCCA</u></font>tctcatttagatttcaataatgtatttttattaaataatgggggaaaaaaacactgtgaatgaaaaggcatcaataacctcgtccactat<br>tttggttaagggaattcaaaatgtaatttttccccaagattgctgttaacatctgccatttatagtcttttagcatggtgctctatgatttttaatgatt<br>tgacttcaaaaaaacaacagttactcttttctaatcagaaaagcaatacatatttttgttacacaatttggaaaatgcaaaaactattaagaagaaaatg<br>aaaatcgcctgttatcctatcaccctgaggagtttttgtagcatttcatgcatatgtatgtgtactttgccacacaaggatcatgctgcatagcagcc	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	65	539	229	NA	intergenic
0	chr6	9568379	9568700	1000792	0	+	Yb8NBC49; pAlu6-9522838; RIP_Alu_chr6_009_02	GCAGTGGATTGGTTTTTCTG	GCTGAAAGAGGCATTGAAATC	SINE	Alu	Yb8	aaaaattctatattccccctccctttgtatccacttactcttgtttcagctcaaatcaaaaaaataaaaaaagaagaattatggcctgaaggagaatgga<br>gagagttggtttcatgaccagaatcaaggaggaaagcttgcctgatcatcctcagaacaccatgagatccttgaaacagtagagtctcttttgattataa<br>aatatttattctgcacagatcaaaatggtgaagggagctgatatatctcaataagcaacatttttaaaaattatgataatttttgtattaactaattttt<br>tatgacaaacgttatgaattcatcagatgttaaagctgaaagaggcattgaaatcagatgaatccttcagagagaaaagagcctt<font color="green"><u>AAAAATTAATAAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCATCTCTACTAAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTAATAAACA</u></font>tatataaagtcacacagagatccagtattagtctcagacaagtgattttaatctttatgtttt<br>ccttaccattattactatttcattcattatcatgacactttaaagtttttgaaacacagaaaaaccaatccactgcttacagtttcccatcaataaatca<br>ttaaattataaagttcatatacaatatagtagaatttatgtcagtttttaaaatattaaaccaaccatagttccaatcaatgtaattaaactaataatta<br>ttgagacagtacagaagtacaattaaagtgaattctcatgtctggttgtctcacttatattctggcttgaccacttactaacttatgtgacagtttttga<br>cctgtaaaatagaaatactagt	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	542	205	NA	intergenic
0	chr6	25637864	25637990	1000793	0	+	Yb8NBC67; 7451; RIP_Alu_chr6_025_01	TCTCTACCCAGCTTTACCAA	GAGGACCAGCTTAGTTTGTG	SINE	Alu	Yb8	cccagattttatgttcacaatgtcaggttcattaaaaaaagaaaaaaaattccgagattcttttgaagaaaagtttgatgaatattaattaacacatgct<br>gaagagaaactgaggtgtttttctcttatactgcattcctcttctctctacccagctttaccaaagaaacagaattataataatttaaaaaaatgtgaaa<br>tatttcttttccaaaaattaaccaaaaccaaaaatcacaagatatttgaggaaaacaatctatgtgtcaaagagcgagatgaacaaaggaattgagctca<br>gataatgcagagtacagcagagagctttaaaaaaaattgttattgtaagttcattgggactgcagagaatgatacatccataaaat<font color="green"><u>AAGAATAGGCTGCT<br></u></font><font color="red">AGAATGGCGTGAACCCGGGAAGCGGAGCTTGCCGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCCA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAGGCTGCT</u></font>atgaacaggagtagtcagagaataagaaacaatgcttaacaattaaaattgtgatactg<br>tagtacagaattaaataaactgatggacacaaactaagctggtcctctggaagaaaaagtagagcaaacctttatagcttataataaaaaaagacattaa<br>aaatatgaaagcaaagtaggtgaaatggtgaattgacttagaataatcaacagccttctaatggagcttcaaaattattataaaaatgagagatattaga<br>ggacaggaaagaatagaaaaccatttcatatgagtctcggggttgatataacccactagaattgatcagaatgagtgggcaaaaggacccacacctaaat<br>atatcttggtggaatctcagaacacct	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	503	375	NA	intron:LRRC16A:NM:017640:24/36
0	chr6	33201403	33201716	1000794	0	+	Yb8NBC65; RIP_Alu_chr6_033_01	ATCTCATCTCCCTGCCTCTG	GGGAGGTCTGGAGATCTGTG	SINE	Alu	Yb8	cgtaattggttgagagaggtgtccaaataaaagtaatacaatttgcaaaatctgtcactaagacttcatagaggcccaaatcagcgacatggcagcattt<br>tctttcatggtaatcagctgccagattgcagagaccccctgatgccagactaaggagtgtggatttctcctctaggccagcaggtccccaacctcactgc<br>tcagaagactctccttgagatcctctgtgaagcaaagattcccccagactcactgcctagagattcagattccctaggtggggaggtctggagatctgtg<br>tttttaatcagctcccaagtgattcccatgtaaccagataagtgtcagaacactgaagatttttgaaaatcttcagaaatctt<font color="green"><u>AAAATGACAAGGCTGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAGCCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAATGACAAGGCTGGA</u></font>aatctgttttcagaagactgtgaagtcagttggagagagcaggaaccagaggcagggagatgagataag<br>aaactgctattattgtccagggaaatcataataagggcatgaattagaataaagaaaaacacaggggtaggggagacggaggaaagaggaggatagaagt<br>tctggccattccagtgtggatgcccacccaaatctagaattaactgagcaaaggcaactagaacaaacaggaatccttgccttggtgaaatatatttgaa<br>ctgggtcagaaatgaggccactgggtatcaagccttagctgcagcgccccctggaggtctctgatgtgctccaggctgaccagctcccgtcaaagaagat<br>ggagcaaagtgctt	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	517	186	NA	intron:HLA-DPB2:NR:001435:2/5
0	chr7	31726060	31726336	1000795	0	+	Yb8NBC192; RIP_Alu_chr7_031_01	CTGCTGTACCCTAGGCTCTTCTATC	GCTCCTCTGCTTTTATGTGTTCTAC	SINE	Alu	Yb8	caatgctattataatttattggtgcaatgttctcacaagttccaggacacaaagatctttccttgacataatccctccatgctctccccagccacacgat<br>tctctccccatcccctcacaatgcatggccgtgtggctctacattttgtccgacagacagtagctggaataaaaataaattccacacattaatttaaata<br>agcccattgggcagataaagtgtttgggcataccagtcaatattcgttgcctaaagcttctactccgaaagaaaccagcaccatggccaatgctgctcta<br>ccctaggctcttctatcccagaggaaagcatcttgtttctattgtcaaatgttcgggggattctttgttcaaaggaaatcatactt<font color="green"><u>AGAAGTCTAATGTG<br></u></font><font color="red">GGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCG<br>GGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCG<br>CCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAGTCTAATGTG</u></font>tagaacaca<br>taaaagcagaggagcaaaattggagtaggggaggtagccccaagtctgcacccaccttaccgcccccctcaaccactgccttcatctaatggcctttaag<br>gaaagccctagggcccttgagagcagggtcagaaagcaccgcactaggtaagtaggcagctccgagcttcccttccactgcctacatcgtaagcgtctct<br>gctcacactcagccccaagcctcctgtgtcgagtgggatgagggttttcattgtgtgggtaatgtatgggttttaatattcaagtttgcagtctctgtct<br>ttgatataacctgtgcatttctgaataggaacaatgtccctggcgactcctcactctgagcagcagccaaatctgca	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	423	132	NA	intergenic
0	chr7	103510102	103510407	1000796	0	-	Yb8NBC134; RIP_Alu_chr7_103_05	TGAGCAAAGGATTTGAATAGGC	AGGGTTCCAGTTTCCCCATA	SINE	Alu	Yb8	tcccttgttagctatattcctaggtattttattctttttgtagtaattgtaaataggagttcatttatgacttggctctctgcttgcctgttgttggtgt<br>ataggaatgctagtgatttttgcacattgattttgtgtcttgagactttgctaaagtttcttatcagcttaagaagcttttgggctgagatgatgggatt<br>ttctaggtataaaatcaaggcaacctcattttaaaatgagcaaaggatttgaataggctttctctaaagaaagtatataaacggtcaatgagtacatgaa<br>acaattctcagcttcattcatcattaggaaaatgcatgtcgaaaccataatgagatactactttacaccattatcatggcaataat<font color="green"><u>AAAAAAGATATACG<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCATTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAAAGATATACG</u></font>ataacatgtgttcatgaagatatggggaaactggaaccctttcttttttatgatttcatttgatttttatttatttttaa<br>aattatttccataggtttttagggaagaagtggtattagattatataagtaagttctttagttgttatttgtgagattttggtgtacccataacccgagc<br>agtgtacactgaacccagagaaattggaactgtcatacattgctggtgggtatgtgaaatgatgcagccatttgaaaaacccttggcacttcattaaaat<br>attaaacatggagttaccatatataccagaaatttcactcctagatatatgcatattcaagagagttgaaaacgtgtccacacaaaaagttgtacatgaa<br>tgttca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	526	206	NA	intergenic
0	chr7	82784772	82785079	1000797	0	-	pAlu7-82545393; Yb8NBC5;1104685591424; RIP_Alu_chr7_082_01	AAGGTCTAAGCGCAGTGGAA;NA	TGTATGCAGGTTGCTTGCTC;NA	SINE	Alu	Yb8	atatttgattctaaatctagaaacatgaagagaaaatgagtagaatcttgctattatatataataaagcatatgttggaaatatagaaataaagggatta<br>atgtaatggattagtttgttagggagaattatgtgtatacagtatatacactatatatgtatatatatatgaatatatgtatacatacatgcactgtcac<br>atgtacataaaatgaatttataaaaagctgaattttccagctaatggaaaatataggaaaattaggaatttaaatgttagaaacaaatagatcacttctt<br>gataacatagggaaaatcacttctagatgatcataaggtctaagcgcagtggaatagaggcatgggattctaataaaacaatctgcaatt<font color="green"><u>AAGAACTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACTCTG</u></font>tacaaaacacattaaaaaaaaaccctgggggctctgtagactgatcagaaggaagatatttttg<br>cagaagcgataaacttggagcaagcaacctgcatacagtgagtttactgtcttactgtagctttactctggggaggtcaagcctggtcaataaatctctg<br>attaagaagttatttaactgattggtaaaactgggatcaagagctggttgcacttaccttagcaccgatagcttccctcccattctcctaaggatctgat<br>ttcctgcagaaaatttttattctgttctgcttttctctccaaatgttgcagaaacaggtactggtctttcagagggatggccatggttgttcagatcttc<br>tagcagatagacgggatgacacactc	UCSC;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA;NA	60;NA	503;NA	167;NA	NA;NA	intergenic
0	chr7	95905458	95905763	1000798	0	+	Yb8NBC69; RIP_Alu_chr7_095_02	CTTTCCCAAGGCCTCTGTC	GCCACACACCTAAAGCCATC	SINE	Alu	Yb8	aacaaacattattttaaaattcacatggaaccagaaaagaacccgaatagccaatgaaatcctaagtgaaaagaacaaagctgtaggcatcacataatat<br>gacttcaaactatactgtaagactacagtaacaaaaacagaatgttactggtacaaaaatagacacatagaccaatggaacagaatttaaaaacccagaa<br>ataaagccacacacctaaagccatctgatctttggcaaagtcaacaagaataagcaatagggaaaggactccctattcaataaatggtgctgggatagct<br>ggctagccatatggagaagaatgaaactgggcccctgcctttcaccatatacaagatggattacagatttaaatgcaagacctcaaactat<font color="green"><u>AAGAATTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACTCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAATTCC</u></font>agaagaaaacctaggaaacataattctggacagaggccttgggaaagaaattatgagtaagtcttcaaaagcaattgcaataaaa<br>taaaaattgataagtaggacctaattaaactaaagagcttctgcacagcaaaagaaactatcaacagtcaacagacaacctacagaatggcagaaaatat<br>gagcaaagtatatattcaacaaaggcctaatattcagactctataaggagcttaaacaattcaacaaacaaaaactacataaccccattaaaaactgggc<br>aaaagacatgtacaggtactttttcaaaagaagacatacaagcagccaacaaacatgaaaatgctcataatcactaatcatcagagaaatgcaaatcaaa<br>accaca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	557	242	NA	intergenic
0	chr7	8716801	8717116	1000799	0	-	Yb8NBC237; RIP_Alu_chr7_008_01	GCCAAAATCAACTGCCAAAC	TGCTGAGGATAGAGCTATAGCAGA	SINE	Alu	Yb8	tatactattttacatcaaaaataaatatgtctaacccatgctggactagcctaacaatatgttactgacttcaaaaagaaaacaaagtaagaacaaagag<br>aaccaaatatacaaacatctagaaggccaatggggtcaaaaaataagtatgtccgtaaagtctttgttttcttctccaggtgtattgagaatctaggcca<br>ctcgtaggcagtcattacttggaaatggttcaccctttagttttccttttagtaggaatactccagggagataacttgaaagttatgttgccatatctaa<br>atttaaaactgctgaggatagagctatagcagaaagatgtaggaaataaaatctactttccatggaatacagtatccttgtgttatcat<font color="green"><u>AAAACCGTAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAACA</font><font color="green"><u>AAAAACGTAAC</u></font>agttgacatgctttgttcaacaaccatgtagaaaaacctgaaaagatttatgagtttggcagttgattttggc<br>cttcaatgtcatttgattatcatgtttccccttgatcttgttttcctgaaaaagtactcaaggcttaattcctcaatccagaaaaatgcttctttaaaat<br>gtaaaatatgagttgcagaagacagagaacaaacctcgcacattagtaaactatccctcctccctcatggaagaattgattaaaagatgaaaacccacca<br>caagatttccagataggcaaggaggcccatttgccccagctgcctggagacattttaacagcagggactttgagcttttaatgaaaatcaggttgaacag<br>tgtggaatcaggaagc	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	491	164	NA	intron:NXPH1:NM:152745:2/3
0	chr7	125052347	125052662	1000800	0	-	pAlu7-124805708; Yb8NBC241; RIP_Alu_chr7_124_02	GGACTGTGTCTAAGGGTGTCCT	GGTAATTGGGAGCAGTTGAGA	SINE	Alu	Yb8	tttttcactgattacttgattcccttaagtctaattttaatgatggcccttcagatatctggacacttgagtacccatttagtcaatatagcctccctca<br>ctacttaataaaagttacgctatgcatagatggccttcagcaaaatggtcatgcattgggcattctgatttctagtttattatgtcactaatagtctttt<br>atattgatcataatactctgacatcccttcattattttgtaattgttttgctgttgaggtgctgaaggtttgaatttctcatatcaaaacatcatgtata<br>aaaatagtaatggaaggtaagagtgaaataggtaattgggagcagttgagataaaatattgtggggaaaccctaaggaatttgac<font color="green"><u>AAGAAAGTCAAGTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGTTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAACAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGTCAAGTTA</u></font>aaggacacccttagacacagtccaatgagataaattggtagcacctgtattgcgtttgtgagcgagtaa<br>ccaaaggaaatgatttatataaaattgttacaggaaaatggctctctaataatcacgttcaccttaaaataactccctgactactcgtctaagtttctca<br>aatttcaccactgactcaaatttttttttcttctagaattattagttaaataaaaggtaacatcagcttttagtagtgtgtgatttaatgtgattaattg<br>agagtaagaatattaataaaacatttcaacttatttcctgatatgcacacaataaaatatgattatgatgtggacattaactttggatgacttaacttgt<br>attaaaagaataaaaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	424	93	NA	intergenic
0	chrX	76006991	76007280	1000801	0	+	Yb8NBC133; RIP_Alu_chrX_075_01	GCCATTGATCCCACAGAAAT	GCTGTGAATTCGTTGGTCCT	SINE	Alu	Yb8	agaattagaaaaacaaattcaaaagctagcagaagacaagaaataactaagatcagagcagaactgaaggagatagagacagcaaagacccttcaaaaaa<br>tcaatcaatccaggagctgcttttttgacaaaaaaaaataataacaaaatagacagattactgctagaataataaagaagaaaagagagaagaataaata<br>cacacaataaaaatgataaaagggatattgccattgatcccacagaaatacaaactaccatcagagaataccataaacacctctatgaaaataaactagg<br>aaatctaaaataaatggataaattcctggacacataacccttgtaagaaataaccagaaagaagtcaaattcctgaatagaccaat<font color="green"><u>AAAAAGTTCTGAAA<br></u></font><font color="red">ATTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG<br>CCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATT<br>GCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGTTCT<br>GAAA</u></font>ttgagacagtaattattagcctaccaaccaaaaaaagcccaggaccaacgaattcacagctgaattctaccagaggtataaagacgaaatgatgcc<br>attccttttcaaactattccaaacaacagaaaaagagagactcttccctaactcattttatgaggccagcatcttcctgataccaaaacctggcaatgac<br>acaacaaagaaaaaaatttcaggccaatatccctaatgaacattgatgcaaaaatcctcaataaaatactggcaaaccaaatccagcagcacaacaaaaa<br>gcttattcaccacgatcaagtcggtttcatccctgggatgcaaggctggttcaacatatgcacatcaataaatgtaatccataacataaa	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr22	29323869	29324095	1000802	0	-	Ya5NBC223; RIP_Alu_chr22_029_01	GTTCTCTGTAAAATGGACCAATCAG	CATAGACCTTCCCAGTGAGTGTTAC	SINE	Alu	Ya5	tgcagcgaccggagattgttaccactgcactccaacctactaaacagagtgaaaaaataatttttttttttacgggttttaccttagagctctaatcctg<br>gcatagtactgtgtccggaattggtgggttcttggtctcactgacttcaagaatgaagctgccaaccttcaaggtgagtgttacagttcttaaagacggc<br>atgtccggagtttgttccttctgatgctcggatgttttcggagtttttttccttttggtgggttcgtggtctcgctggttgcagcagtgaagccatagac<br>cttcccagtgagtgttacagcttataaacgcagtgtacacccaaaaagtgagcagcagtaagagttattgcaaacagtgaaagaat<font color="green"><u>AAAACTTCAACTGC<br></u></font><font color="red">GATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAACTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTT<br>GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATGCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACT<br>CCGACTCAAAACAAAAAAAAAAAAAAC</font><font color="green"><u>AAAACTTCAACTGC</u></font>gtggaaaaaaaaccgagcgagttaccacagctgagtcgggcagcctgcttttattctct<br>tatctggccccacccacatactgctgattggtccattttacagagaacggattggtctgttttacagagtgctgattggtccgttttgacagggtgctga<br>ttggtgtgtttacaatccctgtgctagacacaaaagttctccaggaccccactagattagctagatacagagtgctaattggtgtatttacaaaccctga<br>gctagacacagggtgctgattggtgcatttacataccttgagctagatatagagtgtcgattggtgtattcactatcccttagctagacataaatgttct<br>ccaagtccccacaagatcagctagaca	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	455	214	NA	intergenic
0	chrX	106631245	106631419	1000803	0	-	Yb8NBC102; RIP_Alu_chrX_106_02	GCCTGCAGAATGGAAGAAAC	CCAACTGAGTCCCCAGAAAA	SINE	Alu	Yb8	tcctcaaaatcaccagaggatatgaggcaggagtgattcctgatccctgtggaatgagtgaggaaactgaggcttggagaggtgagaaggcttttttgca<br>tggatagctactgtgtgatgtccaagctggcctagaagcacagctcattcccatggcaccccacacgcttatgtcattcatcttctgcactgcccctttg<br>aggccccaactgagtccccagaaaagtgtacatacgcacacagacacatatatattttgcttactattgtgtaagcagtcataaaacctctgagggtcag<br>gcccctatgtcagtattttttacaagctgtccaggtgattctaaggtgcagccaggggtgagcaccactgcctgaaaagaagatat<font color="green"><u>AAAAATAGGAGACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGA<br>TTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATAGGAGACA</u></font>agagaattggc<br>tttagtggccaagagctttctttaaaaacctttggcctccccaataggaactgaaggtagagtggatgtgaactatggccctagcttccatgcctcagtt<br>tcttccattctgcaggcctttgcaatccttcccccatgctgtggactagcttaataaattagacatcactgaggttgctgtgggaaggggtataaagaaa<br>gaaacacatctctctccccatatgcacatgcttgccaattgctgtgtaagtgtatctttaatattttctgcctgcaagggtggagctaaattgccctgat<br>taaggaagccatggggtctaactagaggtgaaggatagatatttgctgtcaatcaactagaaagaggtgctcctc	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrX	85427779	85428067	1000804	0	-	Yb8NBC30; RIP_Alu_chrX_085_01	TTGCCTTGGATGGCATATCT	AAATGGCCGGAGTAAGTCCT	SINE	Alu	Yb8	tagaaacaactaaaagtttaaaagttggagaatgaagctaaggcataaagttattgttgtttcctttttgcttgtttgtttgtttgcaagtttacgcaaa<br>cagtgtaagttgtcatgagcttaaaacaatggtttataaaataaaatttgcaattcccatgttaaccttaaagcaaaaaaatacaaggggtccaaaatat<br>atatataaagcaagaaactaaacagtatcaccagaggaaaccaccttctctaaaaggaacacaggaagggaaaaaatgaaggaggagaataccacaaact<br>accaaaaatcaaacaacaaaatggccggagtaagtccttacttaacaataataacaatgaatgtaaatagactaaactctccaatc<font color="green"><u>AAAACAGACTGGCT<br></u></font><font color="red">CCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCTAGACCAACCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAA<br>AAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGC<br>TTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGATCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACAGACTG<br>GCT</u></font>gaatggatggaagaacaagaaccattgatttgttgcctacaagaaacacacttcacctataaagacacatatagactgaaaataaaggaaaaagata<br>tgccatccaaggcaaacaaaaaagagcatgagtacctacatttatatcagaaaaactagatttcaagaaaaaaaactatgagacaaagaaggtcattatg<br>taatgataaaggagtcaattcagcaagaaaatacaatttaaatatatatacacccaacactggagcaccgaaatgtataaagaaaatattattaaagcta<br>aagagaggtgagaccccaatacagtaataattggagacttcaataccccactttcagcattggacagatctttcagacagaatatcaac	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:DACH2:NM:053281:1/12
0	chrX	140045003	140045321	1000805	0	+	Yb8NBC8; RIP_Alu_chrX_139_01	AAGAAAACTGATGGGGAAAG	CCAACTAGAGAAACGGAGAA	SINE	Alu	Yb8	attatatatttgttggcttctgatttggaagctatgtgaaggcagaaacatttggttagttttattcactgcaaaatcacccagtgcctagaagagtact<br>tcacaagtgggaatctctcatgaaacacttgttgagtgattgtgtgactgattgtggactaacttatactaaaagtgaaaataaataaaatattagctct<br>taaggcaaaaagatgttcaggcaaggagtgccgagtgaatctgagcacggagctattgcagccaactagagaaacggagaaacttggaagcttggaagtt<br>atagataaggaaataccaaagaagagtttgaagattacagattaatccagtatcttaggactagaagagaatgtgaatatttgtctt<font color="green"><u>AAGAAGAGATGGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGAGATGGT</u></font>gagtgggaaagtgatgtaattagatatgttccatgcatatcataattattgtatgtaattattggtat<br>tagtgccttaatttactctttgataggcctaggttctaccctttccccatcagttttcttctgagttcccaatctactaggtagttgaacaggtaaaatc<br>tgtttatttaacttcatattaatctattcctatgtaatgtgtatatgtatcatgtgtgtatatattatataatctatatgtatacatttctactaagctt<br>atgttcaatgttagcagtagtttctttttctccagtccttaataaagtaattaatattctgatgaaaacagagttaagatacttatgttaggctgggcgt<br>ggtggctcacgcctgtaat	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrX	151668164	151668484	1000806	0	-	pAluX-149665515; pAluX-149635670; Ya5NBC131; RIP_Alu_chrX_151_01	CCCAAGATCTAGGTGATGGACAC	GCACTTGAGATAACCTAGTTAGAATGC	SINE	Alu	Ya5	cgaacactgggattttgttgttgttgtcgttgttctccaggacttatcagagaacatacagctcaataggacatggaataattagccccaaacagaagct<br>tcttccataaaattcagttaagtatttcctcttagagaatgcacttcaaaatttggttgtgcgggagttttgcccagccaggtgcagctcaaagctccta<br>gaatgtgagtcaaagaccaactccttccctctctcccagctgctttcccatccaaaccactatattcatccactttgttaccatccagaatctagcccgt<br>gcttacaattggtcaaattgcacttgagataacctagttagaatgcctttttaatggagtcagctctggctctccctgcctggc<font color="green"><u>AGAAAAGCACCTGGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCTGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAGCACCTGGCC</u></font>agtggcttctgggtcacccttcctgggaaattcagccttatcgctcaggaaacccttgcagat<br>gatgggtgtccatcacctagatcttgggctgtgttcaacagcattgggcaaaaacacaggacaccttccattccagccccaggtggagattcctctctct<br>tcatccccatcctaaagaaactgctcagggtagcattccattccaggcttttctctcaccctctgagaatctggccctggacccaccgggcatcattaga<br>atcagctccttcagaaggaactgcaggttcccagatcccaaattgccccagctcagggcatttatactcaccactctcacctggaaccccacaccctcac<br>ccctgtcttacatttccacta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrY	25393198	25393537	1000807	0	-	Yb8NBC108; RIP_Alu_chrY_025_01	TGTCACTTGATTGTCCGCATA	TCAATGGCATCCTGAAAACA	SINE	Alu	Yb8	cctgcttaactggaatcgtacatataaaattcactgaatctctctaatagcgtcataatactttaaatgaaggaagtaatgatcatgtcctagtcctcag<br>ccagcaggtggcgctcaaagctaacaaggtaagcaatgtacctcgttttctgcaacgtacttcacttttaccatggctcgagtagcagggattgttcaat<br>tccgactgtgtacttatacataattatataatgtatatataaaaatccacaatcaacagacaaactttggttagttttaaactacggccaaaaatataaa<br>tgaatgcttcggataagcaaaagtttagtttgaaagaaagtaccatcgtaaccgtcaatggcatcctgaaaacaaactgcatta<font color="green"><u>AAGAAGTAATTTTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAATAAAA<br>TAAAATAAAACAAACAAACAAACAAAAAAACACAAAACAC</font><font color="green"><u>AAGAAGTAATTTTCTT</u></font>aaccgtatcttcaagtgagttgttgaattttcaaatgagaaatg<br>ttgcaatagtaaacaggggtgagcttcaagaccgtcataatcacaactctcattgctatttctagcaaacatattccttgttatatgcggacaatcaagt<br>gacaaagacagctaaaagctggaaaaaattatcattaaactcctgccatgtcagctcctctgccagtattatctaatgcaattactatgtgaacatgtaa<br>gcaaattgttatttacataaactggccaggaaaaagcctatcatttgtagtcatcaaagttacattcacagcaataggaagaggagcaaataaagagaat<br>gctaaaattaagaaaatatgacgtgaaaatcagaagttaa	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:DAZ4:NM:001005375:1/23
0	chrY	14391181	14391491	1000808	0	+	Yb8NBC109; RIP_Alu_chrY_014_01	GTGCAACTTCAGTTTCTGCTAAGAT	CATGGTTATCTGCAAAGACTATGAC	SINE	Alu	Yb8	gtttagagagcagtctttgtgagattcaaatagatcttacaccttgccagagactgaaatgcccattgatgaaaatactttgcacagaaggactgctgct<br>gaggtggaagttctcagagagctctggaatcctatttggctcatgtgattaactgtaaagtcagaatttcaaaagccctcaataaatatataacacaaac<br>aatggttttcaatcatttgtgcataagagcagccattaggtactacctttcctaaggtgagtaaggttaaatcctgaagtagctaagaaacgttgcaagt<br>catggttttaactgtctgtgcaacttcagtttctgctaagatttttcttgatgaattttcagttatatttatttataaaaaatcctatatt<font color="green"><u>AAGAATCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAATCCA</u></font>acagctacaacagttaaggaaataaaagaactaagactacaaaactcttctagtcattacgtatcacctaaagtacacta<br>tagccagttgtaaatttccatcatgtcatagtctttgcagataaccatggtgaagaatgtccctggaggtgaaggtggcaagtaagctgtaatctcacca<br>ctgcactccagcctcggcgacagagtgagaccctgtctaaaaaaatattaataataatagtaatgtcattcagagtcatgtaaaattgttttctttctgt<br>gttggtcttgcatttttttcttctttgaagatgattttctttgtttttttttttttcagactttttgtctttattagtggttgacaggggctggggaggg<br>aggaatgaaaa	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrY	14192735	14193039	1000809	0	+	Yb8NBC110; RIP_Alu_chrY_014_02	AATAGGCTGAATGCCCCAAT	CTAGCATTGCAATCCCTGCTTT	SINE	Alu	Yb8	tctcactctttgctagcacagcagtctgagatcagattgcaaggcagcagtgaggctgggggaggggcgccagccattgctgagttagttgtttgattag<br>gtaaacaaagtggctgggaagctccaactgggtggagcttcaggaacttggaagagttcctgaaggaagcactaaatatggaaaggaaaaatttttacca<br>gccactacaaaaacacactgaagcacacagacaaatgacactatgaaaaaactacatcatcacggctgcaaaattaaccagctaacatcatgaagccagg<br>atcaaattcacatgtaacaatattaaccttaaatgtaaataggctgaatgccccaattaaaatgcacagactgacaagctagat<font color="green"><u>AAAAAGATAAGACCCG<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCCACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAAAATAAGACCCA</u></font>ttagtgtgccatattcaagagacacatctcatgtgtaaagacacacacagattcaaaataaaggcatggaggaaaattt<br>tccaagcaaatggaaagtagaaaaagcagggattgcaatgctagtttctgacaaacacaacttaaaccaacaaaggtcaaaaaagacaaagaagagcatt<br>acataaagttaaaggtttcattcaacaagaaaaactaactatcctgagtacacatgcagcaaatacaggagcacccagattcacaaaatgagttattaag<br>acctacaaagagacttagacatctcccaagaaataatagtgggagactgtagtagcccgctgtcaatattacacctttcagacagaaaattaacaaagat<br>attca	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrY	7330273	7330590	1000810	0	-	Yb8NBC160; RIP_Alu_chrY_007_01	CCACACATGGGTACCAGTCC	TTGCTTACCCACAGTCACCTC	SINE	Alu	Yb8	aattcattcaattcattatggcatgctctctctcttacactaaattttttttttaaaggtagagatacaattattatcttcttccagcaatagagacttt<br>ggcagtatatagtttaggcacaggctcagccacaatgacatcatctaagatcagaaagagaacagaaagaaaaggagccactgcagagtgcactaagtta<br>gggcagagtcaaccctactacacctgcaacccacagcctctcctctgtgggactcactgcttcctcccctccatctctctagtgcatgaaccacatctct<br>aataaacacacgactctttctctcctgccccacatcagggatccccaagccctaggccacacatgggtaccagtccctggcctgtt<font color="green"><u>AGAAACTGGGCTGC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCAAGTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAGAAA</font><font color="green"><u>AGAAACTGGGCTGC</u></font>ataataggaggtgactgtgggtaagcaaacaaagcttcatctccccattgcttgcctgagctccccat<br>tactgcctgagctctgcctcctgtcagatccgtggcagaattagattcccataggaactcaaaccctattgtgaactccacatgcaagggatctaggttg<br>cactctccttataagaatctaatgcctggtgatctgttactgtctcccatcaccatcagataggactgtctagttgcaggaaaacaagctcagggctccc<br>actgattctacatgatgctgtgttacataattatttcataggtagtatgacataataatagaaatacagccagatgtagtggcttatgcctgtaatctca<br>gcactctgggaggctgag	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrY	6003996	6004310	1000811	0	+	Yb8NBC268; RIP_Alu_chrY_005_01	TGGGGATAGAGGAAGAAGACAA	CCTTTTCATCCAACTACCACTG	SINE	Alu	Yb8	taagaactacttactacttcatattagaactactactgtacaaccaaaccccttcaaagagaaagagcctgtaagagtttgtaagagcaaataaagatat<br>ataaaaattatattctattttttcttaaaaaaataagtgtgtaaataattatatattttgcctactcagttgttccaattaagcctttcaaacagaactt<br>cttcaactaggttctatagatgagtttcaagaagtcctagccgatgaaaattatatgcaacaatttgtatataggtgcaaaattacatgtatttgatggg<br>gatagaggaagaagacaaaactttatcagatttccagagggagccatgactcaataaagtttaagggattgaggactaagaatttt<font color="green"><u>AAAACTGGTAGACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAACAAACAA<br>ACAAACAAACAAACA</font><font color="green"><u>AAAACTGGTAGACA</u></font>agagatgcgaaagaagactgttgaaataatccaaatagtaagtaataaggctgataatatgtcagtggtag<br>ttggatgaaaaggttagatttgagaaatatttctgaagtagctgctttatctcaagtaccctaggaaacagtgtctgagatagaaatttgcattcaaaag<br>attgttgaggagagctcttggaaccaaccctgtaaggccctgaaggaagcaggactgggtagaaggcgaaataaaactgcaatgcttttataacagaggc<br>ctcagcgcatcttaaaagcagctctgagcttggtgtggcccctcagaaatgtgtggcactgaggcaatagagcgaggccttttcattcctgcattgacct<br>gtgagaagatgcaaa	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrY	14324495	14324783	1000812	0	+	Ya5NBC154; RIP_Alu_chrY_014_03	AAACACCCTAGATGCTGGGTAA	AGATGAGTGAGCCTCAGAACAAAG	SINE	Alu	Ya5	taagcgggcctgtgggtgacatcaactcatttacataggagggctataaagtagcgcctgcccatcccgtcctggcaactccgcggtggacactgtgtag<br>actagatttcactcccttacgcgcctggcttaggtaagccccagggcccctgcatccttactccttctaccctccccttcatgccgcgcttgccccttca<br>ttattcgcgtccctgtgaagacatcccctaaagccaagccgagtgattatccccgggaaagctgccttggggaggtggggatgcgaaacaccctagatgc<br>tgggtaatgcggtggggaaatcgatgatttaagaacaaagcaaataaaccggcgtttatgtactgccgctcggagggttcgtgtt<font color="green"><u>AAAATTTCTTAGTGT<br></u></font><font color="red">GCCGAGGCGGGCGGATCACGAGGTCAGGAGATGAAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTA<br>GTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAAATCCCGCCACTG<br>CACTCCAGCCTGGGCGACAGAGCGAGTCTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTTCTTA<br>GTGT</u></font>ttgctctcaaaggtattgtgcgttgtcttggaggctgagatgtgggaacagacagatcctttgttctgaggctcactcatctcccgagccccgagc<br>cgtctcccagcctcagacggctctgcgggctgcatctgtgcagcctggcagcggcggcgctgcgctgtgacattttcacagcccttcttgcagaggcatg<br>tgtgctagggatgccgaaatgccgagagcgccggcaggactagcttccgggccgcgctttgtgtgctgggctgcagtgtggcgcgggcgaggaagctggt<br>agggcggttgtcgcaagctccagctgcagcctccgcctacgtgagaagactagaaagcgggcgcaggaccaggcctgcgttgtttgcag	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	promoter:TMSB4Y:NM:004202
0	chrY	13650287	13650593	1000813	0	-	Ya5NBC155; RIP_Alu_chrY_013_01	TGTCAATATCAGACAGATCCATGAG	ACTTCCAACTATGTGGTCAGTTTTG	SINE	Alu	Ya5	caagacccatcagtgtgctttattcaggagacccatctcatgtgcagagatacacataggctcaaaataaagggatggaggaagatctaccaagcaaatg<br>gaaaacaaaacaaaacaaaaaagcagggattgcaatcctagtctctgacagaacagactttaaaccaacaaagatcagaagaaacaaagaaggccattac<br>ataatggtaaagggatcaattaaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcagcaagattcataaggcaagtccttaaag<br>acctacaaagacacttagactcccacacaataataatgggagactttcacaccccactgtcaatatcagacagatccatgagac<font color="green"><u>AGAAAGTTAACAAGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAGAAA<br>AAAAAAA</font><font color="green"><u>AGAAAGTTAACAAGGA</u></font>tatccaggaattgaattcagctctgcaccaagcagacctaatagacatctacagaactctccaccccaaatcaacag<br>aatatacattcttctcagcaccacatcacacttattccaaaactgaccacatagttggaagtaaagtcctcctcagcaaatgtaaaaaaacagaaatgat<br>atatttatattattctaaatgtttcttggtgcctatttttttttctaattttttggttgttcagtttggacaattcttattttcaaatgtattggttttt<br>tgtgttatctccttataccatggagcttcttccaccaaatatactggtgttgttgtcatttactctgaaatgctcaaaatactcttgattgtcatgagtt<br>gatttta	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrY	16352486	16352783	1000814	0	-	Ya5NBC174; RIP_Alu_chrY_016_01	TCACTCTTTGTCTTGCTGACTACAG	GCTATAGCTTCTATTTACGGGGAAT	SINE	Alu	Ya5	tgggcaccactgagatatagcaaattgcacagagaaaagctcctattcagctgtgtatagtttccctgaatctcatctttccccaaaaccatctgataaa<br>ttaccttccaattgattaaatttcctctaggaaggtactatatacatcaacctcagaccttgtttctatacaaaatcaactgttaccatggctgactgtt<br>cacttcctgaatggctgttaaaatggctaactattcactgcctacttcaacttcctgagttttacacccatgctcactctttgtcttgctgactacagct<br>tctgctacaactatttagatataccagagaaaacaacaacaattgacaagactggagcttcggcaaaagtggtcgcacacattaaaaag<font color="green"><u>TGAATTTTTAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCAAGCCTGTAATCCCGGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTGTACTAAAAATACAAAAAATTATCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCAGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TG<br>AATTTTTAG</u></font>taaaaacaaacaaacatcaaacattagtcttttattctttgagaacttaactgcgattattctctattccccgtaaatagaagctatagcg<br>caatatgaaaattagtccatttcaaaaataactatagtgaagcattcagcctgtacactatatacatctgtatcaaaaacaatgtaaagtttgtggaaat<br>aaataaagacttccttcctctttcacaaatgagagcaaacagagactttttagtgagagcttgctccaacaagggagtctggcgctatcacttgcattta<br>ggaaagactcaaaggccagtggaaatactttatggtgaaaacatgttacaggtagttaggcatgagctggacaggagaggactctccctgccacctac	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrY	4606820	4606821	1000815	0	-	Ya5NBC313; RIP_Alu_chrY_004_01	CACTTGCCATTGACTCCAAA	GGCTGGGTTGTGTGAGTTCT	SINE	Alu	Ya5	aggcctaaagctgaagtaaacagtggtgctaaatatctcacattctaaagcagtggtttttataactttatcgtgtgtcagaatcaccttcagggactgc<br>caaaatacacattgcttggccccacctctaggtcctaattcagtacatctgaagagaagcctgagagttggaatttcccacaagtttataagttatgcta<br>ataatgctgttccagaaacacactttaagaaccactgcgataaagagagctaaatacatttctcagggcttaagagttgaccaagcctgctatactacca<br>cttgccattgactccaaattctgtcttcgcaatttgtataagaaaaattagaacaggagaaataaatagttgttagattcaatagctttt<font color="green"><u>AAGAAGTGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AAGTGTC</u></font>aaggtgattgtgaaaaccatttctgttcttattctggctataggtccatctaagaactcacacaacccagccagccttttcatgcctaccaaa<br>cacaggttattaatgattgatgttagacacaaaagtattgacaatccacagataaatgactacaatagtaccggatatctcttccttttccttccatcct<br>tcatatttctgcacacaggagaaacttagtcttaatgagggaaaggttgcctcaggtccggatggcagttcaagcttgtgatttcagggtggtggggagg<br>agatgagattaaagtgtggcattcacaagtctctcaatctgttacctgttctgtaaaatggagataattgtaaattatgtggccattgaaaagttta	Other	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrY	3454333	3454639	1000816	0	-	Ya5NBC325; RIP_Alu_chrY_003_01	CTTCTCTCTCTGAAATGCCAAT	CAGTTGAAAGGTTTGACAATACACC	SINE	Alu	Ya5	aatgccagcctttgcagatgaggaatcagtgtaaatcctggcatcatgaaaaaactgaatattgtgagaccaccaaaggataacactagatctctagcaa<br>tggatcctaaccaaaccggatattcagaaatgatagatgaagaatacaaagtatggattgtgaggaaactcaaagaaatccaagagaaggtttaaaatca<br>gcacatagaaacaaaagcaatctgagaaatagaagagataaatatatttaaaaatcaaacagaatttttggaaatgaaagaatcacttatgtaatttgga<br>actacagttgaaaggtttgacaatacaccatattaagcataagaatttcagaacttgaagatgggtaattcaactaagtcagataaaaat<font color="green"><u>AAAGAAACAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAGAAAA</font><font color="green"><u>AAAGAAACAA</u></font>atgtaaaagaataaacaaaaccttcaagaaatatgggattatgtaaagcaaccaaacctgtaatatattggcatttcagagag<br>agaagaagaaaaattaggcaggctagacaacatatgtgagagaataattcataaaaattgccataatcttgctagagaggtagacatctaagtacaagaa<br>atccacagaatgccttcaagaggctatacaaaacaaacattatcaaggaatatagtcactgtattattcaaggtaaacactaaatttaaaaatcttaaag<br>gcagctagagaaaagggttaaatcacttataaaggaaaatcgattagactaacaacatacttttaagtagaaaccttacatgccaaaagatattggggag<br>ctatttt	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr1	189128389	189128685	1000817	0	-	Yb8AC1011; RIP_Alu_chr1_187_01	GCCTCTTTTCCTGCTTGAGA	TCTTGGCTGGTGTTACATGC	SINE	Alu	Yb8	tgactttgctcagtgtatgaccccaggcatgaatcatgatttttttaaactaaccatgacactcttatcccttctgtcatattggtaacattcccaacct<br>cttctgcagccatagatgtccaattgagcatgctctaaccaatgcagtgtaaaagcttcaatgcttgtgtgcctcaggggatgaaaaatgcttcctaaaa<br>aaaatgtgagaggcaatcagagaatggaaaagctcttactcatgtgcctcttttcctgcttgagacgtttgattgtgagaagttgaagttattctataac<br>tttcatgagactgtatttcctggacattggaatccaaagcaagggactacagagtaattcgacagagcatacttgagaatcaaat<font color="green"><u>AAAAAACGTGGCATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAAGCGGAGCTTGCAGTGAGCCAAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA</font><font color="green"><u>AAA<br>AAACGTGGCATG</u></font>taacaccagccaagatttgaatttgaacaggttattttacctgattttgtcatctgtaattaaataaacctaaaagagtgaatacttt<br>gagaacaaatcaaatagatgtgccactatatgttaaaaaatacaaagattactagttaacagttcatcatatggaatttaacgcaaatatcttgtggcta<br>ctttaatttgaaatatgtataatttgaactggatatatttgtatgaaaaatatacaatgtactttcagaagacgcactacacttgttcaaacattataaa<br>cactatatgtgtgtgtgtatatatatatatttgtttctaaatgtatgagaaagtttaaagaacatcgtaacaaaataaacaaaaaagcttaaatgag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	482	170	NA	intergenic
0	chr3	31694297	31694602	1000818	0	+	Yb8AC1152; RIP_Alu_chr3_031_01	GCCTGCTGCCTATGAGAAAC	CTTTTAGCCCTCTGTCCCCT	SINE	Alu	Yb8	ggccatgcccaggcccacccacagcaggaaaacatcaggtgagtggccaggaagggccatgtccaggagaggcctttcacagtctctctccagaatcttc<br>tttctgaactcagcatgctattgagaaattctgagtggcattttcaagcagttagaaaaagtgagagcaacaaattctaattctgcttcatctgcaggct<br>gcatctgagggcctcaggagagggtgttccacggcttctcacccacgacactgtggtcctgggctgggtaaagtgaatcaagggctccagcctctgcctg<br>ctgcctatgagaaacagaggagctatgatcctgagacctcacaggcctaccctgtggagacacggacactcaacaacggccaacat<font color="green"><u>AAGACAGAGCAAAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGACAGAGCAAAG</u></font>atgttggttagttcaggggacagagggctaaaaggacctcatcactctctcaagttcagctgcagaggcaatgacaggag<br>gccatgtgctgtgctgggctgaggggtgccccgttgacggtgtggcttaagtgaaacggctagagacaccagagggagacaggaaggacaagggtgcagg<br>gaagcagagggaagaagatgatgatgaacatgctgtgtagagggaagaagggaaagatgaacacattgtgtggggaagagagaataaccagctttaaaac<br>acaatcacacacgtgacaccactgcacagccacctccttgtcggagcccaccgctggtggtcggggacaggggaaaagtgactgctatttggtagagaag<br>gaagga	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	459	139	NA	intron:OSBPL10:NM:017784:9/13
0	chr5	18800819	18801139	1000819	0	+	Yb8NBC505; RIP_Alu_chr5_018_01	TGAGCCTATGACTGAGCATGA	GGGGCTCTCATCAGCATTTA	SINE	Alu	Yb8	atattagatcctaaaactaaataggttagtgttttttttttctgaactgaaatagattaacagaatatattaactgaagtaactttgtcctattatttat<br>aattcttattagacacatgtaattgagcctatgactgagcatgaagactctataaaggacatcgatcaagtatacaatataattttctttaattttgatc<br>tgaaagacttaatagaaagactgaaatcctgttaaaaaattgattacatttctactggatttgggaaatatgtagcatcagtaataaagtacttaatgat<br>catttattgtgtttggtgtatgatttattatatccccattttttataaccctcaaagtatttgcaaaattaatagaactttctt<font color="green"><u>AAGAATATAGTGACTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGTCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATATAGTGACTG</u></font>tcctcaaaatccacttaataagttgatagcctcaaatttatatttcacctactcctccaaaat<br>aattatctgtaaatcacagaattcaaggaaagagatggcttacaaaaggaagtatgacttctcatgttaaatgctgatgagagccccggtaaagttatga<br>gtggttgtatataagtaacactcttagaaatcatgattttcataaaatgtcacttcagcaaaatgaccgggtcaaaatcaatgtggaaaaaatgggtttt<br>ataggttgacaaatctgttggtttgtttactgaatttttaaattaggtagctactctagttttccttattcatatattcatattacactatgtgtcaggc<br>agctattttggtgtggcatat	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	764	427	NA	intergenic
0	chr6	98797935	98798250	1000820	0	+	Yb8JW830; RIP_Alu_chr6_098_01	CTTTGCTGTGCCAGGAATTT	TAGCATAGTCTCTGGCATTTTGG	SINE	Alu	Yb8	tcagtcctctgggctgaaacgaggaccagataatattttagcaaaaaaggtgttttgttttcacgctttcatcatgcaaaaataacccaactaatttagc<br>cctaacttccaaaaaatattcagttttatgcagaaatcaactatgtagatctcaggccaaaaggaatatttatcagaaaactctgaagcaaagactttta<br>taaaaatatactcttccataaagttttattttcagtcatctttgacatgatgtaaatgaattactgcattattgcttcctagttatctcttatctttgct<br>gtgccaggaatttgtgagttttttaatataaattttgatcatttaaaattataaacccctggggtcaggcttaaatattgtaattttaaaat<font color="green"><u>AATTATGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AATTATGA</u></font>aatataatagcatttcacatttttggtgctcccaaaatgccagagactatgctaaatactgtgtatatatcatctc<br>ttttaagtgtaccacaatctggagagggaagtataattgttatctccaatttgtaggtaaagagactagcccttaatgggattaaataatttgtactaag<br>taatactaagcaactgtatttactgggtgatggagtcacgattcccctaccccatgcctctctgactccatactccacttgaaagtagcatcctctttta<br>gaacagccccaatatagccctaatcaatatagttatagacgcttccccagaacagacagaaaaatagtcagcaggttcatgaaaaatgttaaacattact<br>aatcatcaggaaaatg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	485	161	NA	intergenic
0	chr8	138978353	138978557	1000821	0	-	Yb8AC1439; RIP_Alu_chr8_138_01	TTCAATCAAGGAGGGTTTGC	AAGTGAGCCAGGTTCTGTGC	SINE	Alu	Yb8	ctttcatctctgagatctcaatttgtagtcactaacattataatttcatgactttcatgtcataaaatagcaggtacatttgagaagtagggttcaatgt<br>gatttactatggacctggccatttatatagcattttatatttcataaatccctcccacataaacctcattatcagatctttgtcatgcttgtgagtatca<br>tcctttgtgttgtaaagggacataaaatgattttaatgagacccaccacgtgctgagctccatgctattcaatcaaggagggtttgcatcatacctactt<br>agattcccgtcttagccctgccagttaacagctctgccattactttccctttgagagatgcaataaactggggataatcatatatacgtc<font color="green"><u>AAGAGCTGGT<br></u></font><font color="red">ACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC<br>CCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAGCTGGT</u></font>gagcagatacgtaagacgaatgagtccttgtagcacagaacctggctcacttattcactctatcaataaatatttattatcttag<br>tttgtaagcaattgaacaaggtgattgtaggctatgaaataatagacttctgtaagctttcagggtttgtttgtttatttctttgtaaatacaagtcatc<br>taagaagtaagagataaagtggtctgtggaacaaaagtgtggaagggtgttttggtgtgggcacagagtgtgtgggtctttgtgttttgcattgatgcca<br>accagagagaatgtgccacagatgaggaactgaaacacctgtaggacaggtgcacatcccactggatgttgaccccctttgtgtttggcaacccctgttg<br>ttatg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	400	185	NA	NA	intergenic
0	chr9	25967741	25968048	1000822	0	-	Yb8NBC522; RIP_Alu_chr9_025_01	TTCTGAAACCTCTCTGTCCTACAA	GAGCCAGGAACAAATGAGGA	SINE	Alu	Yb8	gacggtggagcatcaatgggttgaaagaaaataaacttgagcataaactttatatttagttaaaatacactttagaaatgaagttgaaacaaatttatat<br>attttacataaatccatactaaaagagttcgctaccagaagatcagcagagagaaaaatttcgtaagtgaattggagagccaggaacaaatgaggaatat<br>cttatacatcctttttcgttcattattttcatattctagttcacaaacttagtttaaatgttaactactttaacttgatatatagaatatttgtctgttg<br>tttttggcatagaaaatgcatatttatctgaaaaagttaacaaaaaataaaaactgtgtttatgattgagcaaatcaatttgtattttcatt<font color="green"><u>AAAAATGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAATGT</u></font>aaatgaattataaaaaattcttattcatagttgtaggacagagaggtttcagaatttacttttcactttactacatcattacat<br>gttcttagttttaaaatttcttgaaatgtatctgaccaaaatgtaaagctgatttattttatgcaatttacaactctttagtttgagtttcaacagttaa<br>cataaaactgcatgtgtatattttatgtgtcaataggcatgaaaattatttcagtggatagaaggcattttttcatatttggatcacctacggaatgggg<br>gtttctaagctaagctaaattcatatcaatctgaacagctaaaaattcaggtaattcaggagattccattatgtatgtgaatttagaataccaaaaaatt<br>taaactgt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	594	278	NA	intergenic
0	chr9	3068466	3068775	1000823	0	+	Yb8NBC585; RIP_Alu_chr9_003_01	CATTGGGTTTAACATTCGCTCT	CACGTGTGCAGCAATGTATG	SINE	Alu	Yb8	taatatctctctgtatcatggcctctttaaaaaaaaaaaaaaggatgagtaggtacagggagaggcgaaggatttggttgttgtggggaaagggaaatta<br>ggcaatttgcttattagcttatttgcttcttattcatttattaattcaagaggatgaatatataaatgcttcataaaattcaaaaggtagaaaagaatat<br>gcagtgaaagtaagtctccctcatgcttttgacccccagtctccaattcctctctccaaaggtgaccactgttaccagttgtgtacccttctagagatac<br>tttatacacataccaatccatgtttggctatattgacattgggtttaacattcgctctatccaatgtcttgctgtatatcatctt<font color="green"><u>AAAAAGCATATCCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGGGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAAGCATATCCTG</u></font>ggttctgcaccttgaattttttaaatgtaacaatatatcttggcaattattccatgtcagtacatatagcagtgt<br>ttcatcctttccaatggctgtatggtattccctcatatgactgtatcaggtttttttcataccacttgctattacaaaaaaactgcaatgaactcatgtt<br>acatacattgctgcacacgtgcgtaagtgcacatgccttttctctcctctctggcttattttactttcctttaatctctggtttctgtgattatgctata<br>ttatatcttggagtttatatctttttggtttgttctgcttagaattcattgggtctattgagtcaaagattcacctttcagaagttactgaaaattatta<br>gctctttatc	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	585	260	NA	intergenic
0	chr12	1222333	1222644	1000824	0	+	Yb8NBC3; RIP_Alu_chr12_001_01	AGATGCGCAAGTCCCTGATA	ATTTTTGGATTCAGCCAACG	SINE	Alu	Yb8	aaacttcaagccataaaaagatgaaaaaagtattagcaaatgctctttattgtattcacctataaaataacctttcttcttatgaaaacggagtcaaatt<br>ccttacagagctcctgtctctaaaggttgtgagcattaatgagatgatacatgtaaaagcttctataagagcaaatgttaacaggattggactaggtagt<br>agtaacataacaggtacagtgggtcctccatatccataggttctgcatttttggattcagccaacggtggattgacaatattatggaaaaaaacaccaat<br>aaaacagaataatacaacaataaaaaataaatagaaaataatatagtgtaacagctatttacatagtgtttacattgtattgggtattag<font color="green"><u>AAGAAATCGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AGAAAAAAAAAA</font><font color="green"><u>AAGAAATCGA</u></font>gagatgatttaaaatatatgcgaagatgtgcatagattatctgcaaatacgacagcattttatatcagggacttgcgc<br>atctgtggattttcatattccaggggagtgttagaaccaatccccagaagatactgaggtgctatgtagggatgtaatgaaacgtgagagatactgaggt<br>gctatgtagggatgtaatgaaacgtgagagatactgaggtgctatgtagggatgtaatgaaacgtgagagatactgaggtcctactgtagggatgtaatg<br>aaacgtgagagatgctataattttcttgtaaaaggaggcactcacttcattaggagagaacttttaatttttccggtaggattttgtgagaaatttgcct<br>cgtgttacttca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	61	558	236	NA	intron:ERC1:NM:178040:13/19
0	chr14	70955950	70956266	1000825	0	-	Yb8AC870; RIP_Alu_chr14_070_02	TAAATCCAGGGAAGAAACGATG	GTCTTTGTGTAGGGACTTTCAGG	SINE	Alu	Yb8	ttcatatttctatcctggctaatactaagcaaaatgttctctacataatagatataaaataattatttgcttaattaacttttccactaataaatccagg<br>gaagaaacgatgtcaacaaacacagaatatctaccttataactacaaaagctttaaggtttttgttttgtttttttgagacagggtcttgctttgtcacc<br>caggctggagtgcagtggtgtgatcatggcccattgcaccctcaacttcccaagctcaagcaatcctcccacctcagccttccaagtagctgggactaca<br>ggtgcatgccaccatgtccagctaatttttttttaagagatggggtctcactatgttgcccaggttagttttgaactctttgcctca<font color="green"><u>AGAGATCCTCCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACATCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAG</font><font color="green"><u>AGAGATCCTCCTT</u></font>gagcctttcaaattacaggattacaggtgtgggccatcacccctggcccaaaagctttcatttcaggcca<br>gaacagccctgaaagtccctacacaaagacagatatttatcaaatgttacctagtcaatttctcaaaacatttacttttcagttgactggaaaaaaacac<br>tggtcggtagcagacaagggtcagttactgaattaagctatagacttaaaaaaaaaaaaaaccctgaaagaaaacaaagtccgttagctctacagcaacc<br>attcactatttaacctactgaacgctcatccagagtgccaatcagaccgttttaattaaggaaactattacaggcagaactcaaggctagtcatgtgctg<br>agacagcaacggttcag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	740	410	NA	intergenic
0	chr16	50561908	50562238	1000826	0	-	Yb8JW813; RIP_Alu_chr16_050_01	AGAGATTTCCAGTCTAGGCTTCG	GATGGTAAACAGCGTCTTTAAGC	SINE	Alu	Yb8	cttctctcctctccttcacctctgcaatcccatgtgtctttaaagtgagagtcattggccattctttggttactccctaaaataatatcaaaatacaccc<br>gctctcatcaaaatccaatgagacggcatatgcagcatttgcttaatgcacattaaatgctcgataagttcaatttccttttattccctctaacgggaag<br>agagtgtctccctctatttctttccttatcggcctggtcagtgggcagccgactttcaaaatctgtttatttgcttagtaaaagtttgaggtaagcaagg<br>tttgcctgagctattgcatttccctgaaagtctattgagtgtagagatttccagtctaggcttcggatgcagagaggcttgggtttaaaagc<font color="green"><u>CAGCTCAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAATT</font><font color="green"><u>CAGCTCAG</u></font>tcaggagctgcagaagcttaaagacgctgtttaccatcctttgtgaaacgggaatgatgat<br>gatgacccatcactcactggagggaatgaatgcaaagtgcctagcacatgtatgcatccaatacatgccacttcccttcccctattaaatatatatttat<br>tcctttgacttacccctgtgcttttcagcatgtccatttcccatggccttggctactgtgggggaagagggcactcacagggtgttttgccttccatcaa<br>aaccaacctcccctgctctctttttctaagtatcctgccttctcttctacttgggatgagttaatcagatgaactaaacagagtcagggcgcgctagcca<br>acaaggttccagaaggtggttaatgtgaaca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	435	98	NA	intergenic
0	chr20	58360124	58360431	1000827	0	+	Yb8NBC444; RIP_Alu_chr20_058_01	GGTGATGCTGTCATTTGGTG	GGACTTACTCCTGCCAGTCCT	SINE	Alu	Yb8	agggctcaggtacttctccttgggttaaaccgagcttttttcaaaatgttgcttaaggaccatgggcgtaagcattgcctgggtttctttttgagccttc<br>agatgcctgagccgtctccagacctgctgagatgaaacaccagggctcgggcccgggacccaggcatgcttaactccaggaggagtttcttatgcactct<br>gaagttgaggcccatggaatgggcagtagtgtgataataagccctgtaagtgattattaaacctccgcagtcctgggctcaactttgatcacctgtatgg<br>tgatgctgtcatttggtgattagggagtatgaaggtcaagttggaacttcagcagtttcaaagaaactcaagttgaagagggatgat<font color="green"><u>AAGAATGTGTTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCAGGAAGCGGAGCTTGCAGTGAGCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGAATGTGTTTG</u></font>ttcctctgttcatgatcttagataggactggcaggagtaagtcccttcccttgcattggacatctgtgcttgcctggca<br>cctgtacctgggaaatggaatgtgtgttttccttttatggaaccacgcttctcctgtttttggtccagggggtttgagagaggctgactccatccctatc<br>cataagggaacctccctggacctggcctagacagccagtttttcctgtttctttgactatagtaatttgttcagggatgggcatgactcatcaagcaaag<br>aagacttgagacttgtgcttaggggactccttttttgggaaagagctctctctgccggaacaacaagctgatcagaggtgagcctggtgctgctagtggc<br>caccagaa	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	467	146	NA	intergenic
0	chr1	58115812	58116123	1000828	0	-	pAlu1-57700822; Yb8NBC461; RIP_Alu_chr1_058_02	CCAAAGTCATTCTTCATTCTGC	GACACCCGAAAAGACTAAAGACA	SINE	Alu	Yb8	aaatttgtttccacgttacttgcaatgttgacaaaaggcaaacaatcaaaatttccaaaaataagaaaaagattttactgaagttcttcacacttaaata<br>atgcagtcattaaataaaacatatttctaaagaatttttcatgttgttattgacatatggacataaagataggcttcagagctttatatacaacaggatt<br>ccaattttgttccaaacatatgtttaggtgtgtaattatagacacccgaaaagactaaagacagtgcgttaagatattaagagtgaacctctctacatag<br>caggataataagggtttttatttttctctttatattttgttcttctaaatctgatacagtgatgagtatgtgtaacttttgtaattat<font color="green"><u>AAAAAATAAATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGACTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAAAATAAATC</u></font>aattaggatttttaaaagatgaagcagaatgaagaatgactttggactaggactgactcaggatggagagaattat<br>cccaagtgcttcaggtgggaacagccaaagggtgtgtgtgggaatgtcctagaattgtgtcatatccagagagggagctgcagggtggggaacagagtgt<br>atcataatggtcaagacttacgcaaactcagggcgcccacaacaatttccttagctgggacagagggtacaaatcttaactttagttggctttcaaaact<br>aggcaactgaactgattaaaaaattcaaaactggggcagtgggttcaagtcctggctcttctaataaccagctctgtggctttgggcatgtgtcttaacc<br>actctgaacctc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	58	529	205	NA	intron:DAB1:NM:021080:2/17
0	chr1	98377886	98377887	1000829	0	-	Yb8NBC596; RIP_Alu_chr1_098_01	TCCAGGGCCAAGTAGTGAAT	CTGCCCCAAATGCTTACACT	SINE	Alu	Yb8	cctaagaagacctcttatctagagattttatcagcataaataaactaaatcttcacacctgtaatgcagctattattcaaattctcatatggatgtccca<br>aagagtaaaaaagatagcaatattttcatgggaaagtgactattctgtcaggacccactcaaccaaatagaataggtcttataacctccttctacttctt<br>ttggttttgcacaataataaataaatgcccagtgtgtgctcaatatttaacttatgaattaaaaagtactgagatttacttctttggcatttaagttatt<br>tttatatccagggccaagtagtgaatacacaatagataagtaggtaccaaatagataattttttagactaccacagctaaggcc<font color="green"><u>AAAGAAATATTTTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAATATTTTTGA</u></font>ataaatgaacatgcttctaaagttaatcttcctatcctaactcctgtgtaatgagtatct<br>tagctccagagaatgattctgatagtggcagtgtaagcatttggggcaggttagtaagactcttggtggttgctatttccactttaataaaggatgatgt<br>ttgaatgtaaaacttagtatcaattttggcaccaaagtaccactaaaaaagttgcacccaccattttccaaccctttcagtattgcccatctatgactaa<br>acattgacaaaagagttgaaactagcatataggacaaatcttacccagttttgcccccatctcctacctgctaactgctctcaacctaccaagaatgaga<br>cttctttatcctaaatgaatcaac	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	543	203	NA	intergenic
0	chr1	231931779	231932093	1000830	0	+	pAlu1-230192979; Yb8NBC605; RIP_Alu_chr1_230_02	GCCTCTAGGTGGAGCCCTTT	GCCCCATTTATGGCTGTTTA	SINE	Alu	Yb8	aggcaagtcaaacagttgtcaaaatccaaaaagcagcttataaccttaaaacatttagcaaacccggcacctgacctgcataatttagccaatctattta<br>tattttgacaacatctgcttttagccagtaatctttaatactgtttttatttctcaaagattaaagtcacatgaactgaaaggtaccacagctttttatc<br>ttccctttaaaaaatatttgatctaagcgcttatcttcctttaggtcaattagaggtctttttatagtcatcacacacaacacatatatagctacagaga<br>caggcagaagaaaacccagtcaccataagatctttcatttgccaatctcctaattggattattggcctctaggtggagcccttt<font color="green"><u>AAGAAACAGGGCTGGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCACCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACAGGGCTGGC</u></font>tgggcgcggtggctcacgcttgtaatcccagcactttgggagcactttgggaggcaggtagatcaggag<br>atcgagatcatcctggctaacacagtgaaaccccatctctactaaaaatacaaaaaaaattagccaggcgtggtggtgggcgccttatgtagtcccagct<br>actcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgtagtgagccgagatcgcgccactgtactccagcttgggcgacagagcga<br>gactccgtctcaaaaaaaaaaaaaataagaaacagggctaggaaaacatgcagcttctaaggcctaataaacagccataaatggggcaaaaaacagattt<br>tgagaggtatctatc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	723	392	NA	intergenic
0	chr8	5735596	5735913	1000831	0	+	Yb8NBC636; RIP_Alu_chr8_005_01	CCTCTGGCAAGCTGCTTAAT	TCACAGCTAGAGGAGACATGAAA	SINE	Alu	Yb8	acaaaaaatattgttattttttaacatctaattttattaaatatctactttgtgttaggttctggtaaatataatagaaatgaatttctactgtttatgt<br>gttttaaagaaaataaatacattttcttctcatgtatgggctgcttttgattcaagtaagaggaaaatcagtgaggatttcttaaaagccatagatattt<br>taaagttatatatttttctttccacaacttgtatctctctctttaatgggagagaaattacagtgtgttttagtggtttaaggcatatctcaaaagctag<br>acacacctgggaaaaaaaaattttgccaaccattattattggtgacctctggcaagctgcttaataaaatcctcaatttctctctctat<font color="green"><u>AAAAATGGAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGGAGA</u></font>taataatccttatctgatggagttttaattatcatggaatgatttcaaatctctgtgtgtttactgtactt<br>agcagactacttatttctgttttcatgtctcctctagctgtgactttttttttcaccatggaagcaaaaatgctcattctgcttttggttttgttttgtt<br>ttactttactttttttttttttttttttataaacaacagcatttttctaggcacattttccttaattttcaaataaatgacaaccagtcattaaaataac<br>ttcaatcttcttattaaactgaaaaacagatttaatcttgttatagaatactttcaaatataactcatcatcatcttcatcaccatcctcatccttttaa<br>tgtataatgagttactat	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	498	169	NA	intergenic
0	chr1	187261588	187261906	1000832	0	-	Yb8AC998; pAlu1-185461323; RIP_Alu_chr1_185_01	GCAAGTGTCACTTTCTTTGAGC	CAACCTGCTATAATCCTGAATAG	SINE	Alu	Yb8	agtattaatgtaatctcttatatatgtatttaaatctcttttattcttggaaatcatcatggttattttggtttattaaatgaatgacatgttaaaaaac<br>aagccttcatctctctaaaaatgtcatattaatgtactcacataaagaaataatggaatgattaaaaattgacaatttttcttaatgtatttgtatatta<br>taaaactggtagtctgtgcacctgccaccagtaatctgcaattatccattgcctgaaagtctgcaatatgctttataagccaaaaagtaaagctgttttc<br>aaaagagaacacaaaatagaatgcaagttgtcactttctttgagcagccatctgtcttagaactacttttctgcaactgaatat<font color="green"><u>AAAAGAAATAGAATTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAAATAGAATTG</u></font>agacaaattgtctattcaggattatagcaggttgttatgattttaaataatgagatagatgtata<br>aaagtattaactccaactatcatatagaagattgcttaaataatatacatttaaagttattagtaacactttataaaatctttcagtttgatcacagttt<br>tagagtatagatacactcttacgattagcatgttatctttgcaaattatctgcatatttgtaaaaagccaaatattcaactgcatgaggattggcattgc<br>aatataaggattgaaagttagatgcgtggtcagaagaatgtcattttcaaataaattgaattgtttgtgtaaggggggcaacaaaggcgaatgagtaagt<br>ggcatttggtttaaattta	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	447	112	NA	intergenic
0	chr1	85521223	85521538	1000833	0	-	pAlu1-85036899; Yb8AC1025; RIP_Alu_chr1_085_01	GGATCCTAAGCTGGAGCAGA	GGATTCCAGTTCAGCCTTGA	SINE	Alu	Yb8	cccccactgcagccagtgtcatgatagcagccactccagaagggccacccacgccatcaccaagattgcaacactgaactccagcctgggcaacagagca<br>agaccctgtctcaaaaaaaaaaagttattttctggaattatgcttgccatcgaaccccacctggagtttgcaaatatcatcttcctctttctgagacttg<br>cattagttaacattgccagtcttcagctactctcattgttgcacagtgcccttcatggatcctaagctggagcagatacatcatttgtgaggctcaggat<br>ataatgattcagagaatgctcaagcatcctagcttctctgaatcattatgtcctgaagcacttagctcagtctacagctagtaatt<font color="green"><u>AAGAACACTGGCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACACTGGCCT</u></font>tattatcaaggctgaactggaatcccggttctgctacttggtgggagaatgaccttgagcaaatcatgtt<br>tctaagcctcggatttctcatctctaaagtgaggataataaagcctacctgtaaggactgttataggcattaaattcccaccacagatgtaaagtgcttg<br>gctcagagtgaatgtgaaataaactgctagtgattatttcttcccagggagttgtaagactgggagatctagcccctcctccaatatccccctgctggca<br>tataggtatgcaacctccaaacattcaggactcatagcaggtgcctgcctgcactcttcaaaccagtcctctagggggaagacaaagggaatgatccctt<br>atctctggttccctca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	499	169	NA	intergenic
0	chr1	28494040	28494488	1000834	0	+	Yb8AC1026; RIP_Alu_chr1_028_01	TTGTCATTGTGGAGTGTTTGC	TGCCATTTATATGTCATCATTTCTC	SINE	Alu	Yb8	tacacatcgggtgtggtggtttacatctgcaatcccaactactcaggaagctgaggtgggaaaactgaagctgaccccaggagttccagaaaagcctggg<br>caatgttgcaggattccatttcaaaaaaattataccgcactttgggaggccgaggcaggtggatcacagtcggaatttgagactagcctgaccaacatgg<br>agaaaccctgtctctactaaaaatataaaattagccgggtgtggtggcacatgcctgtaatcccagctacttgggaggctgagccaggagaaatcgcttg<br>aacccaggaggcggaagttgtggtgagccaagatcgtgtcattgcactccagcctgggcaacaacagcgaaactccatctc<font color="green"><u>AAAAAAAAAAAAAAAATTA<br></u></font><font color="red">TACCACACTTTGGGAGGCCAAGGTGGGTGGATCACCTGAGGTTGGGAGTTCGAGACCAGCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACA<br>AAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGA<br>GCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT<br>TAGCCGGGCGTGGTGGCACATGCCTGTAATCCCAGCCACTCAGGAGGCTGAGGCAGGAGAATAACTTAAACCCAGAAGGCGGAAGTTGCGGTGAGCTGAG<br>ATTGTGCCATTGCCCTCCAGCCTGGGCAATAAGAGCAAAACTCTGTCTC</font><font color="green"><u>AAAAAAAAAAAAAAAATTA</u></font>tacctaaaaaacttacaataagtacatagata<br>acgtgatcacttcttgagaaatgatgacatataaatggcaatattttctattaacaaatatttgttattattcttattttttgagacagggtctcactcc<br>accgcccaagctggagtgcagtggcacgatcatggctcactgcagcctcaacctccctagctcaagtgatccgcccaccttggcctcccaaagtgctggg<br>attacaggcctgagccaccacacctggcctcattgtgtaatcttttgtgtttgtcttcttcgttaccataaagcttttgaagctaattcatgttgtcgtg<br>tgtatccatagttcattcctttttgttgctgagcacaatactattgtat	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1077	775	NA	intergenic
0	chr2	169594483	169594794	1000835	0	-	Yb8NBC420; RIP_Alu_chr2_169_02	AAATGCCCAAGTTTCATTGC	AACTGCCACAGCGATTCTTT	SINE	Alu	Yb8	tgataacttatttatgagctgttgtttaatagaagttcttttctgtgggcaacctcgtcccctcactgctcacccccctcaccttggttccccctgctgt<br>gctctgtaacactgtgattgtctctggttgaagcctccatttccctgtctaggagcttctgtttacactccaccccactctagattgcaagccccttgaa<br>taatttttgtttcctagtaccaagaataatggtgacaaatattaggggatgactcctaaaaatggattaagaagctatttagggggaaaatgcccatttt<br>gtggttttaaaagatgctacaattgccataaaatgcccaagtttcattgcagaaatcaaatactggagttgtgttttgcttggtc<font color="green"><u>AAGAGGAAAGAACTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAGGAAAGAACTG</u></font>tacatttagagacaaagaatcgctgtggcagttaactttggtgttacattctgttttcttcctaagcaattct<br>ttagtcctctacctcaacggtgcctctgaagaaaggacttacgtggccaatgggatcaccgtgtatttatttcccttccctatcagccatagccctcagg<br>gctggaagggcctcattttagtctattcccagactgggtcacccacagtgttgacacacagcatcaaccgacagtgagcttatctggaaaataatgcctt<br>tctattttctttgtttcttagcatatattaaatgtttctttccttctctaataatcttttagataaagaaatcatttgctgagctgataataacaaaagt<br>atcctacctaca	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	430	103	NA	intron:ABCB11:NM:003742:1/28
0	chr2	224181359	224181578	1000836	0	+	Yb8AC726; RIP_Alu_chr2_224_01	TTGACACTGAAGAAAGGACACAG	CTGTCGGAAAAGGTCAAGTGTAT	SINE	Alu	Yb8	gggctcccacggattcaccagatgacttttcacagttcacttagcctttgtaggaattttggagtgctttctatatcggcaaaatgaatatatcacttct<br>ggaggtagggcacttgcatatataatatgatgaggggagctgagaaaagcctccttaacccagaactttctcccccaaatccagccagcctgtctgtatt<br>ctacatcataggtggtttggggttttttagaatttttggtacagggtccttaggagctccattgtaagggataattcattaatcagttattacctcctta<br>gcaggaattagcgcacaaatcaaatcatctcactactttgacactgaagaaaggacacaggccctgtatactacaggggcatgatt<font color="green"><u>AAAAGCATGTATTG<br></u></font><font color="red">TCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG<br>GCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGT<br>CTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGCATGTATTG</u></font>gagtcgtgattctcaaagggtggtcccaggttagcaatatcatcaccactcagcaatctgttagca<br>acacacattttcagaccccacccagaagggttcatttagcataaaaccaaatataaatgtaaatacacttgaccttttccgacagccttcctagagactg<br>gctcaccagcccattatttgctcccgatatggaaacgctactgatgtttgcaaagaacatctcttcctggctttatagaggtttcaaattgattcttgca<br>taaatacagatgggtttatctgagtacaaattagctcatagattgctatgattggaaagatatataaaatgtcatccactctaacctggctcattgcttg<br>catctgctctgtcaaattcc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	448	214	NA	intergenic
0	chr2	85188882	85189186	1000837	0	+	Yb8JW658; RIP_Alu_chr2_085_01	ATAGGTACACGGTTGCAGTTGTC	AATGAAAGGATGCATCTCGAAG	SINE	Alu	Yb8	aaaaatcatgaactctttgtatgttaggagtattagtgtgttatgacttgtcaataccttttgacagtttgttaatttcttttaaatattttaggtcttc<br>ctctctctctctcccttcttctctcatgtttgcaaataatatttacatttatatagtaacagttatcagtcttttctctatagcttctgcttttaaagtt<br>ataaatgttttcccactcccagtttaaaaagacacattcagtttttcttctagtatttgtgttttcatttttcatatttagatctcttacccatttgcca<br>tttattctggtatatgagaagaatgaagctgatgttatatttttccatataggtacacggttgcagttgtctcaataccgtttattt<font color="green"><u>AAAAGTTTGGCTC<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATTATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAGTTTGGCTC</u></font>ttccccactgcttcgagatgcatcctttcattgatctgtctattcatatatcaacactatactcttttaattacagaaactt<br>tataacattttaacgtcgtggagggctagcctccctatgtatctctttcttaaagaattattacttgtttattcttttttttttttttttttttttttgg<br>acacagggtcttgctttgtcacccaggctggagtacagcggcatgatcttgactcaccgcaaccactgcctcccaggttcaaacggtcctcccacttcag<br>cctcccaaggagctgggactacaggcatgtgccatcctgcccagctaatttttgtatttttgtagagatggggtctcactgtgttgctcaggctagtgtt<br>tattc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	402	84	NA	intergenic
0	chr2	121773319	121774539	1000838	0	-	Yb8AC914a; RIP_Alu_chr2_121_01	GATAAATTCCTCTCTGCCCCTAC	CGGGTTTTCTGTAAGACAGACATT	SINE	Alu	Yb8	tgggaacaatcctacccagatttcaccactaggttcaacagaatgtaatgagccagtgctgtatccagtgttaaacaggcatggcatgttgcaacaaatg<br>ctacacaggaccacctaatctgcaaaaaaacttataaccatattttaaagcttcaggaggcaaaactattccaattcaaaacactaagaaacagtcccat<br>catgaaaaccaaaatcaacttctgagggtaccaaaaggggtacaggacaaatgtgaggaaaatcagcatttgtggagttacaaatacgggttttctgtaa<br>gacagacattaaagaattcagtgacaaagcttgaaaatacaaaataaaacaaaagtcagtggtcatataattcaaaatttacttcagaaaaggcaa<font color="green"><u>GGCA<br></u></font><font color="red">GGCCAGGCGCGGTGTCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAGAAAAAAAAAAAGATTTTAAGTG</font><font color="green"><u>GGCA</u></font>actctaactagtaggggcagagaggaatttatccccaccagaattgctagaagggctaaaaaag<br>caggtccaggcaaagcttccagaaacaacgcactgcttaattgctgtgatgaaccccagaaacactgtctctgctgcctcctataccagcaacagaccac<br>ctccacccatcctgcttcctcatgttgcttccaaatcaaaacctcctatgggtgcatcttattgacggaagttgggtcactgcctgcaagggaggctggg<br>aaatgtagcttaccaaattttgaccttaagaaaaagacaggattcacagttttggggagccagcgtatttcactgattctaaaacacacattttccccac<br>attttcatgtctctgaaatcaggatgcttctg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	58	483	336	NA	intergenic
0	chr2	33634805	33635117	1000839	0	-	Yb8AC1089; RIP_Alu_chr2_033_01	CCTGGGGAACAACATTCATC	TTGCTGGACACTTTATGTGGA	SINE	Alu	Yb8	tcatctttataaaattgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattttagggtatgaggatagaaaccagaataaaactaatgactc<br>actgctgggcaataagatcttgcagtatctttgctgcttgaaagtaaaaatctaagttagaccaaggcaagtgatagagaagcactaatgggaaggtccc<br>tctgagcactaaacagtggcttccattgagatttgggaagctttttgttcatgcaaaatgaggacgaaatactggaaaacgactggagaaaaaaggcatc<br>cctggggaacaacattcatctgaaggtattctgtgattaagatgtttctttttgtagttttattatattttttcaaaagctttat<font color="green"><u>AAGATTATTAGAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGATTATTAGAAGA</u></font>accatataaactgtccacataaagtgtccagcaacttcttaaacaacagtaatgtatacttgatcatatatg<br>tacaagtagcaacacattcctaaatgcttagtatacatgcatattgcatttgtcaaatatatttgattcaattgtttataaacttaattaaatgggaaag<br>atagaggaaagcattcattgaaaaggacaaaattacgttttaagttttctcctcgttttttgtcaccatctatgtgatttagtagagaaaggaatagcta<br>agtgtgagtgggaagaagtgcctgtgcattagagaaatagtgtgtaggtgtttttctttgaaggaagaagttcttatattcagtattttagctaggcttg<br>tcccactcagaat	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	462	134	NA	intron:RASGRP3:NM:170672:16/19
0	chr2	233376631	233376920	1000840	0	-	Yb8AC1094; RIP_Alu_chr2_233_01	CTGGTGAAGGAAGAGACAGTGA	TCAATGAGTGTCCGTTTGCT	SINE	Alu	Yb8	gtaaatctacatgtacagaatgcatgctgaaaactacgcaacactgatgaaagaaatcaaagatctaacaacacagatagacataccaagttcatgaact<br>aaaagactaacatggtaaagacatcaagtcttctcaaactgatagagaggtttaacataattcctatcagaatctcagcaagatttttagtaaatacgga<br>caaaattatcctaaaaatttttatggaaaggcgaaggaaatacaaagctaaaaaaaaatttttttaaaagaagattaaactgggaagaatcagtctaccc<br>aatttcaagacttattatacagctacagtaatcaagattgtacagtactggtgaaggaagagacagtgatctatgggacaaaatt<font color="green"><u>AAGAAGCAGAAATAG<br></u></font><font color="red">GCCTGTAATCCCAGCACTTTGGGAGGCGGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAA<br>AAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTT<br>GCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGCAGA<br>AATAG</u></font>aaacagacccacaaagaaatagacccacacaaatatgcttaactaaattttgacaaaggtgaaagaaaacaatttaagagagaaaagacattctt<br>ggtcccgaagcaaacggacactcattgagaaaacaacaacaaaaaacaactagcttatatgaaaattaatttaaaatggaccatgaacttaaatgtaaat<br>tataaaaactataaaatttttccacacacacacaaaaaaaaccattggcatctaaagctaggcaaagtgttcttgttaaacttaatacaaaaaagaacaa<br>cctataaaagaaaaacatttatctattggattaatcaaaatttacacctttttgctctgtgaaagactctattaagagaatgaaatgaaa	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	481	176	NA	intron:GIGYF2:NM:001103146:14/29
0	chr3	2286631	2286932	1000841	0	-	Yb8NBC405; RIP_Alu_chr3_002_02	GCCCATCCCCTATTATAGCC	ACCAAACCCCCATGACACTA	SINE	Alu	Yb8	cccccctccttgtcatcatgtctgtaagcatgtagccacagagcatattaacagatattttaggcaatttgcaaaatctctctgagaatgaaggaaagta<br>gggccccacaggtcataacaagtactcctgtccattcccacacttaaagccaagtgatgtattaacataaggcaatcccatatatatatataccctctgt<br>gcctctaactgtctaagaacaacctcattcccccccttccccaatgtacacactttaaactggctatcaggtactaggcttagtacctgggtgacaaaat<br>aatctgtacaccaaacccccatgacactaatttacctatataacaaacctgtatatatgtcgttgaacctaaaataaaagttaaag<font color="green"><u>TAAATAAATAAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAATAAATA<br>AA</font><font color="green"><u>TAAATAAATAAATA</u></font>aataaataaataaataaacaaacaaacaaacaaactggctataataggggatgggcggggggtggtggcaactactagtcctga<br>atgcaaagctctactacaaactatctttccatctacaaaagtcaatgaactactgagtttcatttcatcgttttttataaataagggtagagactctgta<br>atccatcaggtctcttttctccaaaatgatagttttaatgtaatcgattacatcacggacatagttatacttaatcaatttcagaaccctgacaaagaaa<br>ggtgtaattctttgcgggacctcattgtatcatggtctcccaaaccattcctaagtgatttcttaaagcaacttgaaaaggtgacatcaaaatcctgaag<br>ta	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	463	155	NA	intron:CNTN4:NM:175607:1/24
0	chr3	5250622	5250927	1000842	0	+	Yb8GK644; RIP_Alu_chr3_005_01	GCCTAGCATGAGCTTCCTTT	GCAAGCTTGTCAGAGAATCG	SINE	Alu	Yb8	cagcctagttgattcttaagatgattgcaagcttgtcagagaatcgcagccaggggatccaaacaagttgctcctgagttcctaacacacggcaactgtg<br>acataatcagtggtgctgttctaagctgcgaagttcgtgggtaatttgctgccctgcagtggataactagcacgaagagttctgggaggtggaaacagac<br>aaagcctgtattgtgcttctataaaacttactattataaggaaatcattttcccaggccattaaaaactagtcataaatatgatttttcatgaatgaatc<br>ataatttatttagctattctcctatgattggctatcctgattgccgtctttattttctgtgatgaataatgctaccaagatttgtatataaactgat<font color="green"><u>CCA<br></u></font><font color="red">GGCCGGGTACGGTGGCTCACGCCTGTAATCCCAGCACTTTAGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGAGAGGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AATTAG</font><font color="green"><u>CCA</u></font>ggtgttgtggtgagcacctatagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccaggaggcggaggctgcagtgagca<br>gtgatcatgccactgcactccagcctgggtgacagagggagactccgtctcaaaaaaaaaaaaaaaaattaattaataaaggaagctcatgctaggccag<br>gcatggtggctcatgcctgtgattccagcactttgggtggctgaggcaggtggatggcttgaggtcaggcatttgagatcagcctggctaatatggtgaa<br>actgtgtctctactaaaaatataaaaattagccgggcatggtggcacatgcctgtaatcccagctactcaagaggctgaggcaggagactcacttgagcc<br>taggag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	870	561	NA	intergenic
0	chr3	149111338	149111636	1000843	0	-	Yb8AC1133; RIP_Alu_chr3_149_02	GGAATGTGGTATGTGATGAAGGT	ATATCCCAGCACACAGTTGAAGT	SINE	Alu	Yb8	gctattctgggtcttttgcagctccatgtaaactttaggattttaaaaaatttcgaacagaggtatttattaggttggttcaaaagtaattgtggttttt<br>gccattgaaagttatggtaaaacccacaattgcttttgcatcaacataataacatgatcaaagaggtcaaaaatggtttcccccaagaaaacacctataa<br>gctgaaagctgaatgatggacaggtgctaactagaagaccagaaaaagcaagtttcaaacagagaagtggcatgtgcaaaggtcctgaggtgggaagaaa<br>catgctggatacaagacttgatgggaaaccattgtgactgccatggcaagaaaagggggaatgtggtatgtgatgaaggtggcat<font color="green"><u>AAGAAAGCACCAGAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAAAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAAAGCACCAGAG</u></font>ctctctcttttttttggtgagagttttgtttttttctcaaataactaacattttctttaaaacttttaaggaattttaatatggac<br>agagtacttcaactgtgtgctgggatataaattgtagaatatttgttaaatgaatgagattaattataattttgtttttcaaagtaactttaatagtaat<br>aaaaaataaaaaatatcctaaaggtacaatactggtttgtttaaattgattttagtacattcatacagtacaatgttttgaagttgttaataatgataat<br>tctgcagaagaatattcattggcgtgaagaattgtcctcaatacagtaaatgaaggcagcctttgacaataaaacctcagactggcatggaatccgtga	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	471	157	NA	intergenic
0	chr3	96598899	96599212	1000844	0	-	Yb8AC1141; pAlu3-96397335; RIP_Alu_chr3_096_01	CTCTGAACAAGTAAGTCAGGTTG	AGAACCTCAAGAACCCCACC	SINE	Alu	Yb8	caaaatggaaaaggccctttctcttattttagcttcttgcttttactatcaaggtaagtgatcaaagtcttaatagttaaccatcattttggcttgttgt<br>tgctataagtgactactctgacacctggcagctcagctctctctccagctgagctgagttcccaacaggtaggtacatacataaggaactaaacaataat<br>ttagggattaaactacaatatcttgagcaatggcctacagaaatgaatttataaagaaaacagagtaaagttacataatatattaaagaaaaaatatata<br>aattatcaaactaaatcatttatgatgaaaaattaatatttatacaaatactacagacaaaagctactgacaaatactctgaac<font color="green"><u>AAGTAAGTCAGGTTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGTAAGTCAGGTTGG</u></font>tggggttcttgaggttcttatctgaacaagaataggaaaaggctgtgaactgttgattttcatcgttcac<br>cacggtttgaaccaaacaggtattattttatgtggaaaggatgaaaaagttcaggtttagctcagagaggtctatagctttgatcagattcaaaaagagg<br>attcaaaatataatttttaagaactaatgatagatattaataaaatacttttcaaaaattaaaccttcagttatatgtaggtattcatttgctttgtaaa<br>caaaactttttttccgttttatgcaggtgttttcgcatcttgaaaacatgtttatgtttagtatgcccatctgcctgtccttccgtgatatttttttctg<br>gatacaaagatcta	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	372	44	NA	intergenic
0	chr3	98917819	98918127	1000845	0	+	Yb8AC1181; RIP_Alu_chr3_098_01	TGATTCAAGATCATGGGCAA	AGGCACTGCATAGTCTCCGT	SINE	Alu	Yb8	taataaacattttagtacccctccagtttacttatttcctgtttttcttttgttccctaagttattaagtttgctctgtaagagaagtattagtaaatga<br>gaagccatttgagttacattcagtcactttgattagcatctttggtaatttttttctctctcataaacatatggtaaagcaacatgtaatgttccaataa<br>ttgtgatttcaaatctaaagtactatttgttcattcccgaaacctgaagcaaacatctggtggttaatgctttaagaaaaaaagtaccttagtgcattac<br>ctctgtatatgattcaagatcatgggcaaaaatatgtagatgagatcaagccacaaaagtttaagttgatccattcaattaaaaaagg<font color="green"><u>AAAAAGAAAAGA<br></u></font><font color="red">TGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAAGAAAAGA</u></font>cccaggtgcttctgtgtttcctctaatgtaaggaacggagactatgcagtgcctgaaggacttcttcctttctgcctca<br>tcttgcaattagatataaactgtatcccgtatatatcctcccattggaacaaaagatgtgactgcttccctatccctattccatgtatgctcagaattat<br>tccagtttgtgcataccatcaggttcatattatcatgcattttgttaattcaaattctatttcctacattaaacttatgtcccattttttcttgttttat<br>tttaagatttattccagttcatactttccatttaaagacagcagttgttggccaggtgtggtgggcctgtaatcccagcactttgggaggccaaggtggg<br>tggatcact	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	61	466	145	NA	intron:EPHA6:NM:001080448:14/18
0	chr3	123621142	123621458	1000846	0	+	Yb8AC1197; RIP_Alu_chr3_123_01	GCTTTGGAAGTTTCCTCCCT	ATACTGAGGGGCAAGGGAAA	SINE	Alu	Yb8	ctggccaacatggtgaagccccttctcaactaaaaatacaaaaattagccgggcgtggtggcaggcgcctgtaatcccagctactcagggggctgaggca<br>ggagaatcgcttgaacccaggaggcggaggttgcagtgagccgagattgtgccatcacactctagcctgagggacaagagcgagacttcatctcaaaaaa<br>aaaaaaaacaacaacaaccctttgtagagacagagtttcactacattgcccgggttgaccaagcaaaatttcttacatggtctcattaacagtttctatt<br>tctgctgcccttaatctttaccatctaagtgctttggaagtttcctccctacagaaatcaactagatttctttaaatttcccagacatctt<font color="green"><u>AGAAATGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATGAA</u></font>agtctcttatcttaatatagtttaaaggtgtgtttcccttgcccctcagtattgtaaatatctaaacagatgtg<br>ttgccacaaatggggcaatttttaaatttaaaaacaattttttttttgtatgtgtgctggaccaaaccgtggcatgggagtgattcccacattaaggaat<br>gtctcaacatccttcatagcaattcttgactaccaaatccagtctcaatatcaagcattaatagaactatgtatacctagttgcttaagaccattagcca<br>atgtatgaaaatctagttgggctttataaatatggagtggccacgtaacattatctaaactgggacatttttaaaagtgaaagggggcagtaaaataatt<br>cacaggtgttagctgat	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	447	122	NA	intergenic
0	chr3	130667177	130667470	1000847	0	-	Yb8AC1202; RIP_Alu_chr3_130_01	AGTCCTCTGCAGCCACAAAT	GAGCTCTTTGCTGTGGCTTT	SINE	Alu	Yb8	gctaatggcctttgacagcattagacatgcatggtacagcatgggccaaaaaaaattattcaggaagaagcataataaccttccaaacaaccttctaaat<br>caagtaggcaaccatctgtaaaatgacattgagctggtaaacaagtaggacctttcgtttaccctcagaggactctgtaaaggatactgatggtttaata<br>atattataggatatataaagagcatatagggtcaggcacagtggctcacacctgtaatctcagcactttgggaggctgaggtgggtggataacctgaggt<br>cagaagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaaattagccaggtgtggtggcaac<font color="green"><u>AAAAAATTAGCCAGGC<br></u></font><font color="red">GTGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAA<br>ACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC<br>CCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAAAAA<br>TTAGCCAGGC</u></font>gtggtggcaggcacctgtaatcccagctactcaggaggctgagacaggagaactgcgtgaacccgagaggtggaggttgcagtgagccga<br>gattgtgccactgcactccaggctgggcaaccgagcgagactccatctcaaaaaaaaaaaaaaaaaaaaaaagagcatataattagtttactctcaaagt<br>cacatggacatagaaagcaaagtgtgtataaaatttaagaaggtaggtgccaattgtttgtgtatctctaggctttagggacgtctgtagacttaatttt<br>gactttctgacaagggcaaaaaaaggctcatgaaaaagctatttattaacaggtgggcacatattctgcccaaacttggagggaagaactaaaa	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1175	864	NA	intron:IFT122:NM:052985:8/31
0	chr3	134972991	134973299	1000848	0	+	Yb8AC1204; RIP_Alu_chr3_134_01	CAAGCAAGAATCAATGGGTG	AATTCCAGTGGGCTCTGCTA	SINE	Alu	Yb8	aagcaccaagatattggcttgtaagtactcttctttactaaaaggaaccagaactccttggaaaaatagctgacttcagggctggggcaggaaaaataga<br>tgctgagcctagaacaacacactgaagtgctcaaacagtgatgggacactcaaagcatacaagaaccaatttgaaggatctcctgttgccaagtctggga<br>attttgagcattaaaataaataatgatagcagtaagggataatagcccattgaaagaaataagaatgcatgaggcaatactgattaaacaaatgaagaag<br>ggaaaactaatcaatgtggaaggaatgatagagttagaaaactatcacttggcaaccaatatattgataactgattcaagc<font color="green"><u>AAGAATCAATGGGTGTTAA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCCAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAATCAATGGGTGTTAA</u></font>cttgtgggtgaacgttggacagccataatattaataaaaacaaacaaaacaaagcaaaacaaacattggcca<br>gactgagcactccacacctgacccctcagtatcactaagtgctagcagagcccactggaattcaagctgtgaatacttccctgccttctctcatgttcat<br>tccccaactcctcactttcctgggcaactcatccagaatgaaccggctcagcaccagcccctccaggaagccttcccagatggcataccctgtcctacaa<br>gaagactcctctgttcatattgccattatgattgaattcaccacactctgtaatacactttggctacagaaactctttgagctctttttcttcatcttat<br>attcccaga	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	59	380	67	NA	intron:TF:NM:001063:14/17
0	chr4	178751252	178751557	1000849	0	+	Yb8AC1217; RIP_Alu_chr4_178_02	GGCTATTAAAGCATACACTAGGGG	TCAGCTGCCAGGTATACATCA	SINE	Alu	Yb8	ctatttctatattttcaaaaaagttaatttgttaatcaaaagattgaacttgttagttactaaacagattgtctctaattgttagacaaagaatatttat<br>gtgagcaattgacttttagcaatagcaccataaagataaaggcatattaatttaaaccttaatttttatgggtaaggaaaatgatccatagaaattaaat<br>gaacattgaaagatgatatgacaaaattgttcttttaacctttttgaaatgttcactttttctaaaatgtgcacttttgtacacattattcatctttagc<br>atctttagtactggatcagtagaaatagtattttttaaattttacatgagtggctattaaagcatacactaggggtctttaaattat<font color="green"><u>AAAACCTAAACAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAACCTAAACAA</u></font>atgattaatctctcctaacactaaaatattttaaaattgattactacagtgctggtaatgatgtatacctggcagctgacc<br>gtcaaatcttatgaaggattaaaacataaagtttgcattaaaggtaagatttctatgtatcttataactgtttcatctcagaaaacaatataacaacttc<br>cttttctaacaaccagtatttcttttttcacaaacataaatctgtgagctattagcaaacactgaattgacattccattgaaaagatacacactgaaatt<br>tacagtgtaaaatacattttatgtcctctttatggaaaacacaaacacatacctacacatgcacacatacacacactcacactcacatggaactctatca<br>acatag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	447	128	NA	intergenic
0	chr4	98809689	98809993	1000850	0	+	Yb8AC1219; RIP_Alu_chr4_098_05	GCTTTGACTTGCATCACCAC	TGGCTTCTGTACATGCAGAGTT	SINE	Alu	Yb8	agactagccaaatgtattttaaggatcttttcaaacattctgatggctgagtttatttttattaaggtaatactttacaaactctgacctaattagtctg<br>caaaaatatatatactcatgtatattttgggactcctaaaggccacctggatgtcgcatggatgttatatgttatagtctcatacccagtatattaaaag<br>ttaggcatatgtatgaaggaattgactaataatgcttctattgaagacacaatcttgcagaatcaaacatggaggtttagtttggagaataataagaaaa<br>ccagtaatgtactgacaaaatgtagctttgacttgcatcaccactgatgttctgttctatttttatttttattttaactttttcttt<font color="green"><u>GAAAGTTTATTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>GAAAGTTTATTGC</u></font>atcaagtttcagcatgaagtcattataatgctaatgaggttatacatattaaaagagttacagtaaagcaactctgcatgta<br>cagaagccaaatttaatatataacaaattggatttattcccaatgtgaagggcttctcattatagataattgctctgaaaagcacatttttttattattg<br>ctatattcctaacaaaggtaaaaaggtatccttttttaaaaaaattgtaagtataatttaaaaaaaaccctatccaagaaaaataaacttcattaaattg<br>ttgataacattttttgatgagcaataaagtttcaatcttaaggattcaaattagaaattattaacatgtatttcctgtaatggtatatatgcttcacctc<br>tgtgg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	56	479	161	NA	intron:C4orf37:NM:174952:10/11
0	chr4	68627375	68627376	1000851	0	+	Yb8AC1254; RIP_Alu_chr4_068_02	CAAACCATAGTCCCCCAATG	AGAATCAGTCCAATGCCTGC	SINE	Alu	Yb8	tgttttatctgcaaattgtgttgccaagtgaaagtagaaatctgtggttatctgcagaaaggtgggacccaggaggccccagtagtgacctcacatattt<br>gggtcattcctcaggtttggatcagttctgagtcatgacacttacaatttcactaagcttctctgagcccattttatttccatcactcagggaacaggga<br>gaaaaggtgatttttgtatctctagcacatctgattaatgtcctttgaaattctgaactgtgtacatatgacactttggggaaggattaggagtcttatt<br>atattagagtataagaaaatatcaagattcaattcaaactaaaatgtgatattaacaaaccatagtcccccaatgcatcaacctctattt<font color="green"><u>AAAAAATGGC<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AAAAAATGGC</u></font>atattctggtatagtacaatactggtgtgacctttactaaaagcttacaagtattaattccatactgcatggcaggcatt<br>ggactgattcttttgtttaaaactcacactaccttaggaggaaaagtatcattctcatcagctccatttgatagatgaagaaactgagactcaggatata<br>taatcttgtctaaggtggcacaggaagtggtggctctgtaatatgaacccagggaagccatctttagatcttgtgttaagcgcattaagtgactttgaca<br>accttgaattaattacatatttgaagcagatgttaaagttggtgggagacaggcaggtaggaaggtcatggtgaaagaaacccttaaagaagccctcaaa<br>ggcatctttt	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	467	136	NA	intron:TMPRSS11F:NM:207407:3/10
0	chr4	55693319	55693646	1000852	0	-	Yb8AC1257; RIP_Alu_chr4_055_01	GGGTCTGTTTTGGGTGCTTAATA	GGGATTTTCCCTGGATTATCTT	SINE	Alu	Yb8	tgaagagaagatctgtggtttgggggttgggtggaaggtaaatattcaatgcggctgggattctgcaggtggggagggcaagatctaattacctgctttg<br>cattcttccttggtcagccatctcagagtgcctcttctaagtcacttagcttttcatgcatctaggaaaatggaagctattgttatggagaggcagagga<br>agtcagtggcatcaattcacttagcctcatgccttgaatgagattagtcctcaaaaaaacaaaaaaccaaaaacaaaaagctatttgtatgtgctaggag<br>gggtctgttttgggtgcttaatactgctctgcttttaagtcctgattccaccacttacagttatgggacattggaaaagttacttaaactttct<font color="green"><u>AAACCT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAACTTTCT</font><font color="green"><u>AAACCT</u></font>cattttcccatctcccttaaatgggaataattatagtatcttttctattgagttattatgtgcatt<br>aaataagataatccaaggaaaatacctgacacatagtaactgctccaaaaatctaccccttctttttattgttattgaaaaaagcaaagaatgccctgtt<br>ttttttttttaccatattcctaattattgatgaaaaaacttcattgattatttacaaagagatataacaactttttttttgggcaagacttttaggaagg<br>caaagggacatttacttaaattaagaataaatattttttctctttacttcttttctttctaaggaatactaatagtgcttgccacctcatgggatgttat<br>gaggatgaaatgagaaataaagtactca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	525	202	NA	intergenic
0	chr5	102191273	102191506	1000853	0	-	Yb8NBC615; RIP_Alu_chr5_102_01	GTCCAAGAGTGGTTTTTAATGC	TTCAACCCATGTAGGTATGCTG	SINE	Alu	Yb8	agatcttgggctcattgcaacctccgccttctaggctcaatcaatcctcccacctcagcctcctgagaagctgggaccacagatgcacaccaccacgctt<br>ggctatttttttttcttttgtatttgtagtagacagagggtctcgccatgttgcccaggctcgtcttgaactccagagctgaagcaatctgctggcctcg<br>gcctcctaaagtgctgagattataggtatcagccaccgtgcatggccatgaatagaacatttaagaaagaattgagaatagtttcaaaaggaaaaattaa<br>aataaatatcagctttatactacattaatatttgtttttatgtaaattactcaatgaagtccaagagtggtttttaatgct<font color="green"><u>AAAATCATAGTGAGCTTCA<br></u></font><font color="red">CCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCT<br>GAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTC<br>CGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATCATAGTGAGCTTCA</u></font>aaagatattgtaatttttattttacattccactggaatcctagctat<br>aaaaaatcacgcctcatgaaaacagacttggaatatttcaaatttatagacattttcttaaagtaagaatattttaacaatattcaataatcatttgtat<br>tatgaggataaaattaaaaacagaagaaaatattagaatgtatcaggaaggtgtataaaaaaaatactaaaatgttattttattttcctaggatcatagt<br>ggctcagcatacctacatgggttgaatatcctttatcaagaaaatgtttgggaccagaagggtttcaggttttggatttttttttggattttggaatatg<br>ttccattatatttagttggccatcactaatctga	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	568	315	NA	intergenic
0	chr5	61329398	61329710	1000854	0	+	Yb8AC771; RIP_Alu_chr5_061_01	GGCAAAGCTATTTGGAAGATGA	GAGCCTAGGTTGAATAGCCACTT	SINE	Alu	Yb8	cctggctacacattagaatcacctgggaacttagcttaacagcaacaaaagggcaccctaatgtgtagccaatggttgagaaatgctgatatacaccatc<br>tcggtagaggtatactattattatactcgttcttcagataagaaaactgagatacacagtctagctatcttgccaaaggtcgcacattaactgcccaagg<br>tgcagtcttaacccagagcagctgagcagatccaactatttatttaatagatactgctatttgccatcactgtgattaatgaatgaagacagagcctagg<br>ttgaatagccacttattcaataagtctgtttttaatatatatataaattcccagcccctccaaaaaaggtctttcaacctgtgtttt<font color="green"><u>AAAAACAATTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>ATAAAATAAAAAT</font><font color="green"><u>AAAAACAATTTTC</u></font>tatttcttcatcttccaaatagctttgcccagcatatatatttacatatatataaaatatcaaatgtctttttg<br>catttaatttttaaattgaggtaaaacttacataacataaaattcaccattttaaagtgtataattcggtggcttttagtacattcataatgttgtgcga<br>ccatcaccacgtcgttttcatccaactgccatatggtgatatcgctcccctaaaatattttcagcaacccaaagcctgaaaactcactgtaaaaattcat<br>ggtttagaatcttaaaagtaattatggtttcaagaatatctattaacattgtgaaaacttgtatagctatttgctgttagcagatctaatcttaaggaag<br>cctgtcttttgag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	464	138	NA	intergenic
0	chr5	25311169	25311477	1000855	0	+	Yb8AC1275; RIP_Alu_chr5_025_02	CAACTGCATTTAAACAATTAAGC	AAAAGCAAAGGATCTGTGCAA	SINE	Alu	Yb8	tactgtttctccatatactttgtgccttaactgatatacgatgactataaatagaaaagtaggatatggaataaattacatgtttttgtttgtgtttctg<br>gtctacaatagcaaatctagaaattcatactatgtttattcatatatatgtacatatatacacatgtgcaattgagaaatcaactaagctatgcaaaata<br>tattcaaaattataaattcttacctaatataataagtgaaagcttttctaataaataatactaggttagaaatatataatatctatttaataagtcacta<br>gaaagtcaataatttagtctcatatttgactattttaagaaaatatatatttacagattaatattaattaatacaactgcattt<font color="green"><u>AAACAATTAAGCTTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAACAATTAAGCTTCT</u></font>taatttctcccaaatagtgaataatgaaatgaactattcttttattgcacagatcctttgcttttctaccttgaa<br>aatactacattgcacactttattaggtaaaaacaaaggttgcatttcagagaagatacattcacaaggacatacacagggcatctccttagtatgcctca<br>ctgcaaggcacctgtatctcaaaaacaatacctaaatcgaaaattactgtgcattaagaaaacatacacttttagtcactctaaaatcactgtaccctct<br>agatgatagcaattttcaagattctttttgttgcatttctcaacctgttccttgtaaatgtaatcatcaaaataacaagcatctcttctccttatttgca<br>gcatgcggt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	417	93	NA	intergenic
0	chr5	78313496	78313801	1000856	0	-	Yb8AC1282; RIP_Alu_chr5_078_02	AGGAATTGCCTATATTCCGTG	AAGCATGACTGCCAAGTTCA	SINE	Alu	Yb8	actgatgctggaagaggttaagaaacttgcccaaggttacagggctagtatatgttggaccaggatttgacccagggcacgtggccctagggttgatgcc<br>tataaccactaagccatattgcctactcaaaattattaaaaataacatcccaaggactgcttcatacatactaaataatccctgtattacttttggacat<br>ttgggtcattcctaaatatctcaaggtaaagaatcaacccatcatatttctgagttaggaattgcctatattccatgtaaaataaaaatagattttattt<br>ctgagtcatttgttatgcataattttagacaataaaatgaaggaattttttgactgtctcaaaatgagttacttgaaggaagttgtt<font color="green"><u>AAGAGTCATATCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAGTCATATCT</u></font>atgaacttggcagtcatgctttaagttaatatttacagacccctttcccataattatttaactttagaaaagaaaagcaca<br>agttgataaacaagcctagactgactggactttatactctcatgaaatcctgagttttagtttttttggtttcagaaattatttattgagtaaagaggac<br>tggttaggaactgagatgtaggttttggtcttggctggtcagactgtgacctcgctggccatcatttccacatctgtgaaacagaggagttgggctgaac<br>tctagactttgtctagctctaaattaatttaactctaaggctcttgtgtccattagggcgagtttctaacttggcaaatgcacattatcatacctatcat<br>actaac	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	483	165	NA	intron:ARSB:NM:000046:1/8
0	chr5	166083342	166083646	1000857	0	-	Yb8AC1283; RIP_Alu_chr5_166_01	TGAGAAGCATTGGTTTAACTGTTG	AAGGTCAGACTTACCAGAACATTG	SINE	Alu	Yb8	ttgctgagtcctgcactgtaccacagcggttgaaagaattgattctggagtttgtcctctatgtttatatcttgcttgcaccatttaataactttgtgac<br>ctaagctaacttactttggttttctcatttgtaaagtggtggtaataaccgctcctgtctcataaggttgttgtaaggataaaaagaaaacaatttatgt<br>aaagcccttattccttcgtaggaggaataaattggtgtttatagatatatagcatgtatatgtaaaatatttagtattcaacattggtttttagattttt<br>tatagcacaattttacacattaaaacttgagaagcattggtttaactgttgaagcaaaaatgtttatatgataaataatttttcc<font color="green"><u>AAAGAAGTAAACATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAAACCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAGAAGTAAACATC</u></font>acaatgttctggtaagtctgaccttatacataaggcataaactatgtaagtgtactaaataaataattgtactgtagtgc<br>ctccttatacgcaggtgagtatatcccaagaccccccagtggatgcttgaaactgtggatactactgaacccagttgctgtccatcaaaacgcatttatg<br>ttcatgtcttcatccataaatttaataacctttctatcttaactaagcacttgtcacgcactgtggctgtaagttttacagtttgaggtgcgacagcaaa<br>actgggatgagtttcttttccttcttcacagtttctcggatagatttgttcttatcatagatcttagtaaccctttttgacttttttttcctttaagtta<br>agaac	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	418	98	NA	intergenic
0	chr5	6577388	6577694	1000858	0	+	Yb8AC1290; RIP_Alu_chr5_006_01	AGACCTCCTGTGTGTGGACC	CCCAGAGCTCCGTTCTGTAG	SINE	Alu	Yb8	atggtttttctctcctgagcacatgaggatgcctgagcctggctggtcctcctgcccttctcagggagacggatggcgtgttccatctttgctctctgct<br>acattgtgcatttgggcgcagagacaaattcagaaaggcttctaattatgcaaggaatcgaggtctcatctcctcagcacacttgtttacagcactgagc<br>cctcctctccctctccctccgccacacactggggctttgtcccctctggaacagacactggtcaacagcctggtgtcatcccacagacctcctgtgtgtg<br>gaccaaaggtcctcaacatttagggatggtcccctcacagggggtcggccctctgtgtctgaacgtggccaagccacgacccctgatg<font color="green"><u>GAAAGTTACAAG<br></u></font><font color="red">GAGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAAC<br>CCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCTGGCGCCTGTAGTCCCAGCTACTCGGGATGCTGAGGCAGGAGAATGGCGTGAACCT<br>GGGAAGCGGAGCTTGCGGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>GAAAGTTACAAG</u></font>gaggccagtgtgaggaagaattttctacagaacggagctctgggagaaggaagaaatcaccctgcggaagaagtgagttcc<br>ccatcacagtgggtatccaacggctgaacgcccatgagtgaggagtgttgaagaggtctctggatttaagggtaggaggcatgacagagtctatgtcctt<br>tccaactccagcatcctcatggcctcgataccccagacagagtgaagactatgaggccccaagtcctcaagagggagaggggctgctgcctgcaagggag<br>aaggatagagccaaggaagcaagcccaggggcccctgggagacactgggcgagattccagggggcagggtctattcccagaaacgagatggattggaacg<br>gccacag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	479	160	NA	intergenic
0	chr5	126970246	126970558	1000859	0	-	Yb8AC1330; RIP_Alu_chr5_126_01	TCCCTAACTCACTTGAAAAGCTG	TAGTCATCCAAATGCCACCA	SINE	Alu	Yb8	gtaaatatgtatctataatatgtatatgtgttaggatgcactatgaaatgtacttcttaatatgataacagtaaaaaaagtgtgaaagtcactgatttaa<br>tatttgtactttcataagcaattagcaggcacccattgtaacagataaaatccaattcttagattaactaaaaaaggaacatcactatacatgtgaacta<br>atttcaagatatgtgttcaaaaatgtttatgtttattaagaaaaatatgtacttgactacaaagaaaattcttctgacttcttgaagtcaaatccctaac<br>tcacttgaaaagctgaggagtaaaaccaaacaaagacatacacaaaaactcttagttaccttaaataaacttttaaactaggattt<font color="green"><u>AAGATGACTGTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGCGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGATGACTGTCCT</u></font>ttggtggcatttggatgactaatttgaaaggtttttgttaagctgaaatgtagacatatttattaggatttta<br>aaatcttaaaagaggccttttcagggctcatttcgttatgacaacaaccttgttgagccaccagtgagaggaatgacatctccggcatcttaacgggtga<br>cgtcaatgatgggtacttgatggaggctgtcctggtcccaacccttgttctggaaccttcagtggctgcctgggtgaaaattctgcaaagtcagactgtg<br>gagggagagcagcacagaagttctgtggaagtccacaccagcagagtgagattctagcatgggggctgctctaggactgaatggaaaatctaagaacttg<br>catatgcagattt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	456	129	NA	intergenic
0	chr5	32607280	32607281	1000860	0	+	Yb8AC1334; RIP_Alu_chr5_032_01	CTGGCTAGAGTGGTTTCCTGA	AGTCCCTTGCTCAAAATCACA	SINE	Alu	Yb8	atttctttcactctagtggaatttctatttttgattctagtattctagtacattgtacatgtatctgtcaacagattctaaactccctgaaggagacaaa<br>ttaccagtggacaagaacacagcctctggagtccaataggcctggtgcattcattagggtaagtggtgctaggtgctataacagataaacctcaaattat<br>ttgtgacttcacacaatataaccttatttcttcactcatatgaagtcgtttttagtacacattgccatttatggacataggctcttaccttctcatgatt<br>ctttgctgcttaatctggctagagtggtttcctgatgtacacagtgacaaactcagagagacacagctacttactagattgagctat<font color="green"><u>AAGAAACTGATGA<br></u></font><font color="red">GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAAACTGATGA</u></font>catatgaacataaatactgtctacaaaatggcagtttcacatgattaaacctaacttcacatgtgattttgagcaa<br>gggactctctaaatccatttctttagctataaaatggggtaccaatactcattccctccaaggagattataaagatcaaataagaggatgtatgcaaaga<br>acttcgcatacaggctgacacagagtcagtaactcaaacaggttaggtatgatttacccaatgcctagcacagactctctggcacatactagctattctt<br>taattatatatatgcatgtatgtatgtataaattgagatagaattcacataccataggctgggtgcagtggtgctgtaatcccagcacttcaggaggcca<br>aggcaggcgga	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	492	168	NA	intergenic
0	chr6	54888282	54888593	1000861	0	+	Yb8NBC290; RIP_Alu_chr6_054_03	ATTGTGGAGGGAAGTCGTTG	GGACTGAAAACCCCTAACTCC	SINE	Alu	Yb8	aaaaaagcatagatagttagatgggtagatgtgtggatggatagatggatgaatggcaggtagattaaaaagtaacacaactttttatcatattgttttg<br>acttagtctgatggctttctttatacacaaaaatgaaatactacttttgaattttaagttttcttataatgctacagtaattctccatgtaatttaggtc<br>tctacaccctagagatttctgtctatcctttctctgttgtccgttagaagcaattagccaatgagtcttgtcacatcatcctttacaactttacctccaa<br>cccttttattcctgctttcgccatccacgttggcatctcatgctagactaggactgaaaacccctaactcctctacctactggt<font color="green"><u>AGAAACTCACATTTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AGAAACTCACATTTCT</u></font>aactcatcctatgtatacaaacacgttaattttctcaggtattgttttaatcatgtgattctttgactataa<br>agttatgaatggttcactgttgtgccttatagaatccatagttagcctagcattcaacgacttccctccacaattgaccaaatttaccattacaatcttt<br>ctagctttatcgccatctctttcttagtagaattccatttcccaacaaaactgggcctctagctgtttctgctgtagtgctgctttgccgctgaaccttc<br>ctaaagcttctgctcctattccccaaactcctcttcatgcactattcatgcactattttacaattttccttatgcagagggatttttactccgtcctccc<br>tctttctctttc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	524	196	NA	intron:FAM83B:NM:001010872:2/5
0	chr6	140994597	140994871	1000862	0	+	Yb8NBC568; RIP_Alu_chr6_140_01	AAACCCAACAAATGTGCTTC	GGCAACCTACACAAAGCATGT	SINE	Alu	Yb8	caggagaattaaagaattcttgtaaacagtaatatcataaaattctgtgtctgcagccttatataattttttcttcctagtattctagattcataaaaaa<br>acacaaaaagaacaagtgatcctgagttatagtttgtaatcaagttatttcttgtaatggagacactgaagactcagaatttattaaaatgcagtaattt<br>tattttgataaaacccaacaaatgtgcttctaatagtggtttttcctattgaaggactatacaactcagtgttgtataaatatgatatttaatatagtac<br>atataagattctatatagtaaatatagaataaaaaatacaaagattgctatagcatgtgatctgtggattactcaaggatagtgatt<font color="green"><u>AAGAATAATTAGC<br></u></font><font color="red">TTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGC<br>CGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTG<br>CGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAATTAGC</u></font>acacatgctttg<br>tgtaggttgcctataaaaataaaaattggaagatgtaaattttttcaacaatagaattatactgggaaaaatttgtatgttcttcaataacttagaagaa<br>ttgttgagctctcctgtagcttttcggcactttgtaaaaatgaaatatcaagaatcaatatttatatttgttaaaaatattaaacaagtcagctttgatt<br>gaacaacatctcttaaatgtccctgttgccagagagttgaatgagatgaacttataggtgcatgttgtgtattttaccagctctggttttaccaaaaact<br>tggagacatgaaaaaagtaaaaggaccactacccagcattcagtaaaataaactagaatgtccacaatgtctttt	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	501	213	NA	intergenic
0	chr6	55369994	55370300	1000863	0	+	Yb8AC1354; RIP_Alu_chr6_055_01	TTGGAGGTTTCTTAAATAGATGGT	TCCCAGAGTGGGTCAGAAAG	SINE	Alu	Yb8	ttcttaagtggtttattttgcattctaacaagggggaagctttttttttttttttttctggagtcagagtcttggtgttttcacccaggctggagtgtag<br>tggcttgatcacagctacgtcaatctggaatgcctgggctcaagtgatcctcacacctcagcctccagagaagtttggactacaggtgtgcaccaccatg<br>cccagctaatctttaaactttttagagatggggtcttgctatgttggccaggctggcttcaaactcctgggctcaagtgatcttcccaacttagccttcc<br>aaagtgctggttttacaggcatcagccacattggaggtttcttaaatagatggtaatccaatatgcaaattggagactaaaactatttt<font color="green"><u>AAAAAAATGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAAATGCC</u></font>ttaactgtatttgagttcagactccctgagaatgagttttctaatgacaaaatcctcacttttctagtcttgtgttgggctg<br>ctgctttctgacccactctgggaggtttactactggtctgaaactccaatctatctctctactgattattgttaacacagtgctcaaatcttggctccca<br>ataagctgtcttctgaatagcagcagccctaggtggagagataactgaatggaacatttgctaataaagtcatgtacctcgtaaggacattctggtcaat<br>gacagacagacagactatacatcagtggtcccataagattataataccgtattttttatagtatcttttctatgtttatatgcttaaatatgcaaatatt<br>taccatt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	493	175	NA	intron:GFRAL:NM:207410:6/9
0	chr6	107090330	107090639	1000864	0	-	Yb8AC1372; pAlu6-106983670; RIP_Alu_chr6_107_02	GTTTGGCCTGAACCTAACCA	TCTTTGTTTCCCAAGCCACT	SINE	Alu	Yb8	actggatacttgaaaaattaaatatgaaggtactgactttgaggttattcacaagagagggggctatgaatgtcaaaggggaaaatgaacctttacaatg<br>gaaagatggaggaggcaccactttaaccaagcaatcaaacttggtattgctaaagggcaagctagttagcacatgccacctgctgtgatacaacataaat<br>atatggcactatctatatgaagtatccgtgccaaaactgtttggcctgaacctaaccataccttaagacctaagccctagtagataggaaattcgggcaa<br>cagaagaacatgctaaatagtagcatgagggaacactcagacaaatctagaatgtggcacactctctaagacagctggcctaaatcttttt<font color="green"><u>AAAAGTTAG<br></u></font><font color="red">TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAG<br>CGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAGTTAG</u></font>tggcttgggaaacaaagatggggtattttagagatctttaaaaagagacttaaaagagacagaacaatcaaacgcatttat<br>gtgaaccttgattggatcctgatttgaaaatgcaaatctataagagacattcctgaagcaattgggaaaatttggtgatggactattgaacagatattat<br>catggacactttgtgaattttctcaagtgtaataatgatacttatgcaggggaataccattagaaagagagtcaggctgaatcctatgtggaatgaaggg<br>tcatgatatctccaatgtacattgaagtgctcagaaaaataacacaaatatggtaaaatgataacaattattgggtcaaagtgaatggtacattggtgtt<br>cactgaacta	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	499	179	NA	intron:AIM1:NM:001624:6/20
0	chr7	37965042	37965347	1000865	0	-	pAlu7-37705191; Yb8NBC412; RIP_Alu_chr7_037_02	CAAAGATGGTTGTTGAGGTTGA	CCCAGCAACTTCCCCTTAAT	SINE	Alu	Yb8	gctggcaatctaacaaaggtgatattgaaatagttttattttaagctcatatcattcaaaatcagctttagagaaatgttttaacgtattccccagtctt<br>ttcttcacttagtcaacatgacttctataagtaatgcacaaatagcatgcaaccagtaaataaaatcatagttgaaaattattatcaattatcctcccaa<br>gtcaagtgcatttgatgtggacttctgtcttctaatctatgagatgggcataataacaatagtagctaattcaaagatggttgttgaggttgaataaaat<br>aatcagtataaaactctggagagaatgtgacacaaaacaagtgctcactgatgtagattgaggttgatactactgttattttctctatctt<font color="green"><u>AAAAATGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAATGTT</u></font>atgtgcaaaatgccagggttcatgagagatgtatttattaaggggaagttgctggggtttttttttaaactacatgtatattata<br>cttgacgttgcctgagcatggctagaggtgggtgcatgtttctgcacacgaatgtgagcaatgaggaacagacagagataccttagggaatggtttagct<br>gacgggtccagcagagcccactgagggcactgcctttgtaggcctccaggaccctgctctaatccatagcagattcatacagtcatacaggtttgatttt<br>gttggtccatggagggttgatcaggatctcagggggaaagaagccagaggtagaagacatctaatattttgagtgctgattgcctgcaaagctgtgtgct<br>acacac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	500	185	NA	intergenic
0	chr7	44928934	44929243	1000866	0	-	Yb8NBC418; RIP_Alu_chr7_044_01	TGGCCGTCAAAGACATAGTG	TACGGGAATAAGGGCAAGG	SINE	Alu	Yb8	gagccacattataataaaagtaaaaagtgttgaaagcaggccccccaaaatctggccataaactggccccaaaactggccataaacaaaatctctgcagc<br>actgtaacatgttcataatggccctaatgcccatgctggaaggttgtgggtttacgggaataagggcaaggaacacctggcccgcccagggcggaaaact<br>gcttaaaggcattcttaagccacaaacaatagcatgagcgatctgtgccttaaggacatgctgctgttgcagttaactagcccaacctattcctttaatt<br>tggcccatcccttcgtttcccataagggatacttttagttaatttaatatctatagaaacaatgctaatgactggtttgctgtt<font color="green"><u>AATAAATATGTGGGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AATAAATATGTGGGTA</u></font>aatctctgttcggggctctcagctctgaaggctgtgagacccctgatttcccactttacacctctatatttctg<br>tgtgtgtgtctttaattcctctagcaccactaggttagggtctccccgacccagctggtctcggtaaaaaagaaacaggtgaaattgattgtaatcatat<br>tttatttaaaatggttgatctaaaacattataatttcaatgtatcatcaatatgaaaatgatcgatactacattttacattgtgtgcactatgtctttga<br>cggccagtgtactctttacacttactgtacttctccagtggactcgctgcacttcaagtgctcagagcacgtgtgggtgccagagtggacagcatagagc<br>ttcggaggcc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	854	528	NA	intergenic
0	chr7	57368849	57369159	1000867	0	+	Yb8NBC620; RIP_Alu_chr7_057_01	TCACTTTCCCCAAGTCAAGG	CTCATAGACTAAATTTGCCATCCTG	SINE	Alu	Yb8	tgaggcaggaggatcacttgagcctggtggggtggaggttgtagtgagccaagaatgcaccactgcactccagcctgggtagtgggagagaaatcatgtc<br>tcaaaaaaaaatatatagaatcactttccccaagtcaaggcctcgttttctttgagggagttgtaaaaagttttaaccaaatttttcaattattttatta<br>ttattttttgagatggattattcctgtgtcacccaggctggagttcacccaggctggagtgcagtggcacaatcccggctcactacaacttccacctccc<br>agattcaagccattctcctgcctcatcctcctgagtagctgggattagaggcacccagcaccacgcccggctaatttttgtattttt<font color="green"><u>AATAGAGATTGGG<br></u></font><font color="red">GCCGGGCGCGATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AATAGAGATTGGG</u></font>tttcgccatgttggccaggctggtctcgaccgcctgacctcaggtgatccacctgacttggccaccgaaagtgttg<br>ggattacaggtgtgagccaccacaccctacctcagatttatatatcaggatggcaaatttagtctatgagtttatcatttatttcatcctcagatttaaa<br>ctgttgaacccaaaatgtagagatgaatctctaaattcaactgttttatttggcaagaaggacttgtcatttggggcatacacacagaccaggtggcctt<br>caatatgtccaaagaacaaactggagattggaggttttgtgtgtgtttgtttgtttgttttgtttttttgctttgttttgttttgttttgatggagtctc<br>actctgtcgcc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	750	426	NA	intergenic
0	chr7	37443816	37444129	1000868	0	+	Yb8AC877; pAlu7-37184419; RIP_Alu_chr7_037_03	TGACCTAGGTAACTGCTCCTAAA	CCCGTCTGTATTTTAACAGTTGG	SINE	Alu	Yb8	ccctcaaagtaaaaaaaaattaataatacaataaaacagtaaaatctcaggttagttcaaatggaactggggatacacattagaagagctttcatttgag<br>gaccctaaattgctaacttcagtcattacatcagttattttaattcacagtcaatcataactcatccccgtctgtattttaacagttggtacttctcctg<br>tactggtttaagtttcatttttaattaacaaatagtaatcattcatatttatgaggtacaattggacgtattgatacatgtatacctaaggaatgatcaa<br>atcaggctaatgaacatatctatcacttcaaatatttagcattcctttgtggtgggaacatttaaaatcccctcttttagctgtttt<font color="green"><u>GAAATATACAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>GAAATATACAATA</u></font>tataattattaactattgccaccatgctgtgtaataaaatcaccagaacttattcctcctgtctgactgaaac<br>tttctatctgggtttgaccaacatctcctctttccctgccaaccccacctttcctcttgttttcttgaagaaaagacatataaagcaaactaattctagt<br>caagactttaggagcagttacctaggtcacttgaagaaaattaaatacaaaatgcatctctttttatgatttcagcaagatagtttaataaagaacctga<br>atagaaactactgaatcgggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggaggatcacgaggtcaggagatcgaga<br>ccatcctggctaac	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	763	436	NA	intron:ELMO1:NM:014800:1/22
0	chr7	42571163	42571490	1000869	0	-	Yb8AC931; pAlu7-42311324; RIP_Alu_chr7_042_02	TCCATTCGAAAAGCCTACTGAT	GTCTACCTGAAGCAAAAGTAAATCC	SINE	Alu	Yb8	caatttcagaatgaaaagctgtatgtgaatggccaagaggctgagcaggtctttggcaaatacaatgaggtagaaagacaaaagttgcagtttagagacc<br>aggaaagaaagaccctggtaaaaatgccagcttttcacttactatcctaaaggctacatcttagaagtaatggtaaaatggaaagaagagtcctcacaag<br>gactgaaaccaaatttgagtcttctaagtttctaatagattaatataatgtgactctagtttagttgtctacctgaagcaaaagtaaatcctattattct<br>taatggaacatcatataacaccttaaaactccattctattttctacaacacaatgtctatacacaaacaaaaataatcaggcatac<font color="green"><u>AAGAAGATAATAAT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCAGAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGATAATAAT</u></font>taatcaaagcacagcagaaaaacatacaatagaaataaatcagtaggaaatttgattt<br>tgataaatgatatttgatttatcagacatgaacatttaaataactatgcacatatactgtgtgaaatggtaaactgaatatactcattgcccaaaattga<br>taaatagattgaaaaacataccaatcaaaatatcagtaggcttttcgaatggaaattcataaaatacataaaatatgtatggaaatgcaaaggatctagt<br>atagtcaaaataattttgaaaaagaaaaaatattggagtatttatactacataaacagaatagagtatggaaatatacctatactttgtggccacactta<br>tttgacaatgtgccaaagaaactcaata	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	687	346	NA	intergenic
0	chr7	70205014	70205324	1000870	0	+	Yb8AC1384; RIP_Alu_chr7_070_01	CCAAGCAAGAAGACTGGGAG	TGTGATTTCATCCTCCACCA	SINE	Alu	Yb8	actgcactcaagcctgggagacagagtgagactctgtctcagaaaaaaaaaaaaaaggatactatattaccactaaactatgttcattccaggaatgcaa<br>ggatagttgaaggttcaaagttgaccaatgcagttatcccaacagcttctgttggattaatgacaacatctctgctgcctggctcagtgtgtgcccacac<br>agctggctaactagttacctgtcttccccaggtggttttttcacagcctgatggattcttcttgcccactgcctcccaccacaaaaacaatgagaacacc<br>aggtattgcagcaattaaagagtttaataattgcagtgccagccaagcaagaagactgggagaaattttcttaaatccatctcctc<font color="green"><u>AAGAATTTGGAGGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAATTTGGAGGC</u></font>tagggttttataagggcactttggcaggcagggggctgggacactgaaacaactgattggtggaggatgaaatca<br>cagggtgtctaacatcgtctttacacaattgagtcagttgccaggaggacacctcaggaccaggtggcttcgcttggtctgctgaaatgctaaatctgaa<br>aaataactgtaaagaccagttcaataggtttcacagtagtgatgttatctacggaagtacttggggaagttataaatcttttttttttttgagagagaga<br>gtcttgctctgtcacccaggctggagtgtggtggcacaatctcggctcactgcaagctccgcctcccgggttcatgccattctcctgcctcagcctccca<br>agtagctggga	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	460	135	NA	intergenic
0	chr7	3781727	3782033	1000871	0	-	Yb8AC1402; RIP_Alu_chr7_003_01	TGGTCACAAACAACTGTGGG	TTGAAGGCTGTTTCCCAGAC	SINE	Alu	Yb8	tctatgattgtcctttgcacaccaaattgacaatgtctgcttacaagtttctctcttctgaagacagacagctcctccaaagcaaatgctactcattcgt<br>tcattaacttacactcagtcatgtattcattcaacagatagttactgatcacacagcatacatgagttgctatcatatttctgactccagtgtctggcac<br>tttgatgcgtggtaggtgatgaatgaagaatcctgtggacaatgcagggtgggaaatacgttacacgtgattaggatcacagttagggactggtggaaga<br>ttcactcgtttcgagaatcagtgcaaatactggtcacaaacaactgtgggaaagacagtcaagactttatcaaataattttttcattt<font color="green"><u>AAAGAGGTACTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCAGAGCTTGGAGTGAGCCGAGATTACGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAA<br>GAAAAAA</font><font color="green"><u>AAAGAGGTACTA</u></font>ataaataaaaatgttatgaaaggctgatttagaaacatcagtgtgaatgaccagtcaagcacatatgtgtcagagctggag<br>atacatctggtctgggaaacagccttcaaatagaaaaaaaaaaataaaataaaaaaaaaggctttctttgaaagttgagaaggcaacaaaacaaagccac<br>aatctgctacaggtaaaatgtaaagtattaggttgaaccataggcagttgccactattccattgcttttgacttacaaaatgacaattacatatggtcca<br>acttaatagaaaccaagagggccaaaatagtgaagaaagactattaggagctcaaaaaccaaacaccttaaactatttctaagcttctaatttgaacttt<br>atttact	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	181	NA	intron:SDK1:NM:152744:4/45
0	chr8	137786012	137786322	1000872	0	+	Yb8JW649; pAlu8-137401126; RIP_Alu_chr8_137_01	TTTCTTAGATGTCTGGGAGTGCT	ATACTTTGGGTTGGAGCTTCTTG	SINE	Alu	Yb8	cagtggcttgagttatttaaaaaaaaaatatggatcgtgcactcattcacttgtttatacatttgttttcttagccagtccttggaaaagggtaagaaat<br>aaaatctgatgaaaaggtgttgaaaacttaaaaacagccttgttactaaaagtagcattttgattgtgaaatgcacttcatatatacatatctcagtttc<br>tttatctgacaaatggtgatacaaaaatgtattaatgagaaaattctaatttttatggagaactccaggcctctttcatcttatttgggagaggagaaaa<br>aaaatcatagttaagattcaaggaaaaggacaaaaacttatgcatagcatactttgggttggagcttcttgatctagtaaagata<font color="green"><u>GAAATGAATAATTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>GAAATGAATAATTCC</u></font>ttttttattaatagtgagattaatggaataagagaagcctaaggctggccttccctttggaaaggagcactccc<br>agacatctaagaaatgtccagatgggagccataatatggctaaaatgaagtaagactcgtgattttaggagataaagatgcctgtcacaatttattttta<br>ttttttttgtggactcttcttgctattagagttccctttttagtgtataatttaaagatatatatgagaaaaatatcagttaatcattgtaatataaatc<br>acaatttggggctgctgttatgtaaaatatatcatttagaaagagcccttgataattccttctccagctaaacaaagtctacctttgcagatttaaccac<br>atttgctcttt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	466	140	NA	intergenic
0	chr8	76037864	76038186	1000873	0	+	Yb8AC963a; RIP_Alu_chr8_076_02	TCTCCTGGTGTAGTCAATTCAGA	CTGCTTAGTATCCCAAACCACTG	SINE	Alu	Yb8	atcccaaaccactgaattttatcttgagtatttaatagttaatcaatatggcatcctcattataatagcaaggaacaaggaaaggaaagtaatttataat<br>aaaactgcatttctgaggccgggcgcggtggctcacgcctgtaatcccaacactttggaaggccgaggcgggcggattacgagatcaggagatcgagacc<br>acggtgaaaccccaactctactaaaaatacaaaaaaatcatccgggcgtggtggcgggtggctgtagtcccagctactcgggaggctgaggcaggagaat<br>agcgtgaacccgggaggcggagcttgcagtgaagcgagatcgcgccactgcactccagcctgggagacagagcaagactccgtcttaaaa<font color="green"><u>CACACAAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTACAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAACAAAAAAAACCAAAAAAAAC</font><font color="green"><u>CACACAAACA</u></font>aacaaacaacaaaaaaactgcatttctgtcagttaatactctgaattgactacaccaggagaaaaaa<br>tgaagtgtttcgatgattgttgaacatatttataataaaacatttgggatgaagagaataacaacaattagaagaaaagtgaaagtgtcagaaaaagtat<br>taacaaagcaaagtaatttgtatgtaataagagaaaaatgaaaataattggggtaagactattgttccaagaaaattaatagctgctgaaggggagaaac<br>aaggaagtataatattcttgcaaatatactggactttattttcaaatttaagcatcaaattcttgacattatgttacgagacaagcttttgatagcaaat<br>atttttgtctaaaatcacaccat	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	804	471	NA	intergenic
0	chr8	76039504	76039819	1000874	0	-	Yb8AC963b; RIP_Alu_chr8_076_03	GACATCTTAGGATGGAGGGAAAT	CCTATACAAATTCTAGGTCAGACAG	SINE	Alu	Yb8	aaatcgttactttttttctgttactttttaatcttgacaaagaaacctgtcaagattaaacattctacaaaaaaacagttttaaagttggcaaaaaatat<br>atatggcacttttaagatttttaatgaaaaatttgaaaattgtaagcacactgagtggagtattttgaaaaatctcattaaaagaagaaagttctagttg<br>acaattatagaacagcacaaataacaaattgtagtgagccccatactgctggagaaaatttaatattataataatccaagacattattaggacatcttag<br>gatggagggaaatacaaattatataatttctgtgcctctgttatgatattttgttcaatatttgatattatatagatttttgatttaatt<font color="green"><u>AAGAAACAGA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACAGA</u></font>attaatatgtgaaattgtttgacaaaggtttttatgtattaaaatatatcaatagtttcttttaaatgtgtaat<br>gatatgcagattttcttaaagtgaagaaaattaccactggtttatcaataaagttgttactttaaaaatgtctgtctgacctagaatttgtataggtttt<br>tttagaaaattagatgtgataaatttataaatattggatagtaaataatatgttctcatgtggaggctattaaaaaatatgatctttgtacttaaagatc<br>catatgaacttaaataggaggttaggatattaattaatttgaaatagagttggaacatactagccaacttttacagaaagtgttaatcgagctaaaagat<br>acccttgagagcaaag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	606	280	NA	intergenic
0	chr8	52530069	52530244	1000875	0	+	Yb8AC1415; RIP_Alu_chr8_052_01	CAACATGCCTCGGAAAGAAT	AAACACATTTGCCCACACAA	SINE	Alu	Yb8	ataggagtttctcttttctgggaatctcaagcaaaaattaaatatttgctaaggtgttaaaaatgcctaatgattgattctaagtttggggaagggggat<br>caaccattcctgagatgaacatattctggaaagtggaaataaattaaattaatccaattcaacaataaatgtttaatttaattcctaacaatatcgaatg<br>tcttaagtatattagtaacatactggatgttggaaagatacagagatgaacaaacacactcctccttgtgtgctcctactctagctgcatgaacagagga<br>cagaacacatcatctgtaaaaccacaacatgcctcggaaagaattgtctcagagttaggtgtaaatgtgataggagaacattctggc<font color="green"><u>AAGAGGTAAGGGA<br></u></font><font color="red">AAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAG<br>CCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGGTAAGGGA</u></font>aagtataggga<br>aagttattataataattgaaataaatgttccgaggtaagtcagtggcagtagaactggaaaaggagataatctgatgcatgcatggaactaaatttttag<br>agaattgtggaagaaggagtagcactagagggtgaatcagaggttactggaggagagtaatgataccaatagagatagcaaacacaggatgctgtgggtt<br>tgtgtgggcaaatgtgtttgacagatgtaaagatttacatgtgaagataaaaacaaagtcctggcaatgtccattgaaatctcaggaaggatctcagcaa<br>taaagactataaattttacatgaagtatgaaagctgaaggtttgggaagagctcagatggaagaggaaaaaaatgt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	495	306	NA	intron:PXDNL:NM:144651:9/23
0	chr8	69580239	69580543	1000876	0	+	Yb8AC1432; RIP_Alu_chr8_069_01	CAGTAGCTGGTGGGTTTGGT	TTCTCAGCCAGTCATGTTGC	SINE	Alu	Yb8	ggtgatctgcctgccttggcctcccaaagtgcatggtgagccaccatgcctagccccaaattgattttcacaggggttgtgccactttacattcccacca<br>gcaagtatggagggttccaatttcttcacatcttggccatcatttgttatggtttgtctttgaaattatagccatcttcatgagagtgaagtagtatttc<br>attgtactttttatttacatttttaaatgactaattatgtcgataatgtattattgaatattagatcattattacttgaattttgtatcattctttcatt<br>cactcaaagaatgccagtagctggtgggtttggtggtaagaagttgaacaaattctcttttgattgctttcattttctcactg<font color="green"><u>AAAGAATGAGCAACATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACCAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCCGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAGAATGAGCAACATG</u></font>actggctgagaatcaggcaagggagaggtattgaagttaactgaggaataaaaatatatctgaaccaaaactgaaaaa<br>ctgaactagttggaattcaattaatctagcaaatatatatttttttactttcaaaagttgttatgactgtatcatgcatcaaaatatataaagaataata<br>taatgaacacctaggtaactaccatgtagctaaaaataactcatcagtgaaaccaacctctattgcatggtagccaactccatctctattctgaatttta<br>actttaaccccttggagtgtttttgttttttttgtttttggttttgttatgttactacacacacatacacacacacacacatgcacatgcacacacacac<br>actca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	420	98	NA	intron:C8orf34:NM:052958:4/13
0	chr8	106250587	106250899	1000877	0	+	Yb8AC1440; RIP_Alu_chr8_106_01	AAACAACCCAGGCTGAAATG	AAAAACCCACTGATTGGCTG	SINE	Alu	Yb8	atttaaaaacctaaaagtgttttcaagtttcacttatccttaattcataaatttgctttttttcttataaaatttatagccatataaccaactatatctc<br>ttattttgggggagaaataaaaatgaagccgagagataacttttccactaaattataacagttgtatagaatttcatgaccaggttaaaaatctaacaag<br>tctggctccagagacttttacctaaatcatttatgaaaacaacccaggctgaaatgagttagcagatgcaacaaaaattatagtactctcaaaaccagga<br>gaaaactaaacaatttaaaataaattattattttaaatatttttaaatgattgaagatacataagagggaatagaaatcttaacg<font color="green"><u>AAAGAATATGATACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGTGGAGCTTGCAAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAGAATATGATACC</u></font>acaaaaaatactagacagacttcaaacaaataaggtagaacatctgaaagtaaaatatatatatatatatat<br>atatatatatatatatatatatatatatatatatatatatataaaattaaaatagaaaatgcaatggactgcttaagtgatagccaggcacagctaaaca<br>gggggtgagaaaatggggagacagatctcagaaaaagtcctaaaatgcaaccaagagcaataagaggttggacacatgaaaaacagttaagtgacgtgga<br>caataaaatgaaaatattaagcattcatctaagtttgtgtgtgtgagaatagagagggaagaaatatctttgggaaaaaatagcagcaaatatccagaac<br>tgaaaaagacatg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	980	652	NA	intergenic
0	chr9	76713833	76714180	1000878	0	+	Yb8NBC627; RIP_Alu_chr9_074_01	ATTCACCATGAATTGCCAAG	TTTCTTTGATGAGGGGAAGTG	SINE	Alu	Yb8	aaaaaaaaaactcacccaggacagaggaatggcagatttattgtatttagataaatttctgtctagcatcctgtgaataggagcttgagatgatattgta<br>aatacatggcttctcttaggacataccgtggcgttccacgccaccaatagggtgaagtggattgtgcatttcctgccaagcagccaatgagagtcaaaac<br>tgggtctaaaatactgtgctgtaaaaagaacttaagagctagttgtcagttgtgtttattatgctataaacttttaaacatcactttcctgatcgccctt<br>agattgctagtttagaagtagattgatgattcagagttcttatcatccttcctgagatattcaccatgaattgccaagttatttttaagaaatca<font color="green"><u>ATGTG<br></u></font><font color="red">TGGCAGGTGCGGTGGCTCATGCCTGTATTCCCAGCACTTTGGGGCACTTTGGGAGGCCAATGCAGGCAAATCACTTGAGGCCAGAAGTTCAAGACTATCC<br>TGGCCAACATGGTGAAACCCCGTCTCAACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCA<br>GGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTC<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAGCTGGGCATGGTGGT</font><font color="green"><u>ATGTG</u></font>cctttaatcccaactactcaggaggctgagacatgagaatcgcttga<br>acctggaaagcggaggttgcagtgagctgagatcacgccactgcactccagcctgtgcaatagagcaagattctgtccccccctcaaaaaaaaaaaaaag<br>aagaagaaaaagaaaaaaatcaatggatctttctttccctacctcacttcccctcatcaaagaaaacaaattttaactattctagtgttgtaaaactatt<br>ctaagtaattcagctagttcctctctctacacccacatactgcttttgtctgtaaaatacaacaagtgttctgggtcagtttccaatgttctatgcagtg<br>cctaaaatggtgggcactagaaggagaaactgagtgatatgactgact	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	58	607	254	NA	intergenic
0	chr9	41028344	41028654	1000879	0	-	Yb8AC1472; RIP_Alu_chr9_040_01	TGAACTCTTTATTGGTTGCCA	CATTCAAGGAAACAATGGGG	SINE	Alu	Yb8	ggataattttgttcacaaatatagatgcaaaattctatgctgcgttaaagctattttaaagagcatattttaggactagtgtttatttccttgtgtctaa<br>atttcctgttttgcatttgcttcagctaagattgttttgggctaaacttatcttcctacacagacccttgatagcatgtaaatcaaaataatcataggca<br>tatttaattatatgacatttgttgtctctacactaaagtttttctaacattcttaaattttgtctacataatgaatatatttttaacagaaaaaaaaact<br>ataggtttgattgcctgcttatttaaataaaaagagaaagaagagatagaagaactatgaactctttattggttgccaaacaat<font color="green"><u>AAAAATACCTTTTTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTTAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAATACCTTTTTGG</u></font>gaaaaaagtaaaccccattgtttccttgaatgtgcttgttctttcagctcagtcctaagagtggatgattact<br>gagcacagggccctgagatgaactgagggactcgcatctcattcaagcctcacaaagcagtggaaggattaacgttttcttcattttataaagagcacac<br>tgagactaagaatggttgattagtttgcccaagttctcaagagtagtaaaattttgagccgttaatttaaaacagaccatctggaggtagactagagctg<br>agaatgatctcaattaaaggaaggaattctgtcactttgtgaagttttatgaagagataagatagaaaccaacctactgagtattaaacaaaaggctatt<br>tcccgaaaaca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	412	81	NA	intergenic
0	chr9	70892982	70893286	1000880	0	-	Yb8AC1483; RIP_Alu_chr9_068_01	TCTGGAAGAAGCAGGACTCA	CTAGCTCTCCGCAATCCATC	SINE	Alu	Yb8	gtaataaagtacacaattcttatacaacctacataagcaagcactacatttaaggtagcgccttcctcctcttgttttctgaggatgccctactctgtaa<br>ttgagtagcctctaattaactatcttaacttcattatactctgcgacttaccctgaattctttcccaggcaagatccaagaacactcttggggtctggaa<br>caagaccccctttctggcgtcaggactgggcaccagatctggaagaagcaggactcaggccgggtgcgttggctcatgcctgtaatcccaacactttggg<br>aggccaaggcgggcggatcacctgaggtcaggagttcaagaccagcccagccaacatggcgaaaccccgtctctactaaaaatat<font color="green"><u>AAAAATTAGTCGCCG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAATTAGTCGCCG</u></font>ggtgcggtggctcatgcctgtaatcccagcactttggaaggccgaggcggccggatcacgaggtcaggagatagagacca<br>tcctggctaacattgtgaaaccccgtctctactaaaaatacaaaaaaattagccagtcatgatggtgggtacctgtagtcccagctacccaggagcctga<br>ggcaggagaatcactggaacccagaaggcagaggctgaagtgagccgagatcgtgccactgcaatccagcctgggcaacagaacaagactctgagaagaa<br>gaaggagaaggagaaggagaagaagaagaagaaggactctgcaggtggcacacaaaattagatgaaaagaataaggggaccttaaagggggaagaaaaaa<br>atggg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	988	668	NA	intergenic
0	chr10	13298029	13298326	1000881	0	-	Yb8AC1519; RIP_Alu_chr10_013_01	GCCACGATAATATGGAAAGTGC	AGCAGTTGAGGGATTTGTCC	SINE	Alu	Yb8	gcaaacaaaggtgaacatttttctagataatgtctcattagtttagacactctaataatacttttgagtctcaaataacacactagtgagtctggatcat<br>ttagtgtgtaaacccccaagttaaagacttgcagaattaaaaatgatgatcccattcctccgaggcaccgaggtctggagtactaacttacgattttatt<br>aggtcatgttctaaattgtaatttttcatgcactcagtacggaacagaagggcactgaggggcaagatactctatatttatgttttgtgttatattcctc<br>tgtcctttaaacattttaaaccatgtgtattcaaactatttttaattacaaaagccacgataatatggaaagtgccaaaacttttt<font color="green"><u>AAAAAGTGTTAGTA<br></u></font><font color="red">TAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAACTAGCCGGGCACAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA</font><font color="green"><u>AA<br>AAAGTGTTAGTA</u></font>cattgtaagatcacagagtatatcaaaaccatcagttgtagactagaatattcatatttaacaaatttgcttatggacaaatccctca<br>actgctagagacagaacttttaaactaaagtgatttacacaattagaatggtatcctgaaatcattactgaaaaaatagtgtagcatgtcctttagaaag<br>tcactacagatgtggccggggtgtggtggctcacacctgtaatcccaacactctgggggccgaggcaggtggatcacctgaggtcgggagttccagacca<br>gtctgactaacacggtgaaacacagtctctactaaaaacacaaaaattagctgggagtgtcagtgggtgtctgtaatcccagctactcgggaggctga	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	453	141	NA	intergenic
0	chr10	63413635	63413800	1000882	0	-	Yb8AC1529; RIP_Alu_chr10_063_01	GAGCCCAGGGGATGAATAAT	CTTCTGCATGAACCCAGTCA	SINE	Alu	Yb8	caggaagagtaacctaagtctccttatgtagatatgcaaggataatgtctatgctttcctcatgcagtcagcgaacctttatttggttcctactcagtgc<br>caaatgctgtgttcagcagtgggtttacatgggtgaacatgacagcacctgctctcagggagctcccagtcctatcctccattgatggagaaaacagatg<br>agactccagaccaaggaggagttggtggctcccaaagaaacagtggagcccaggggatgaataattaaaacgtaaagcacatcccagagctcagcacttt<br>gaaggtgtttatgtcccagctctgaaaaagatgttctgtatttcatctctgagtctgagattttaaaagctatggttggtacaacagt<font color="green"><u>AAGAACAAAAGG<br></u></font><font color="red">GGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCC<br>GCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACAAAAGG</u></font>gggtttaaaaaatataatttgg<br>attatgactgggttcatgcagaagaaaaatggatacatcaagtacatagtctaccatttaaatatttcctttttcattttttttttttctggcacttggc<br>ttgccacaacttccatggggcaagtgcttcatacgcaggtcagcagccgagatctctctcaataatgaacgatattactaatataaaatttgcctcaact<br>gaacttcaaacctgatgtgatttttttttcctcaggtgggatgtggacagagaacatctatataataggtgttatcattcaggaggcctagactgaacca<br>atactttgcagctaaatgtaatttgcgaagcacaatttaacagctccatttagcgacttttcacaa	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	379	201	NA	intron:ARID5B:NM:032199:3/10
0	chr10	70668131	70668437	1000883	0	-	Yb8AC1531; RIP_Alu_chr10_070_01	TGCAAAGTGGAAATGTCACC	GTTTTGTGGACCTGGCAAAC	SINE	Alu	Yb8	ccttaaacttttttgtccacgaaagtaggacaccctgggagaagatttcaggtccagtttgaatgaaagacgtgctgagatgtgcaactgagccgcagaa<br>acttcatgcctacgtgcatcccccatggccttctcttctctaagctgaatcaccccaatttttttaaaacattgcttctgcagccttttctaataattta<br>aaggactattactctcatctgagtggtttgaaatatatggtagcagaaggagtaattattgaaaagttagagctcttggattcatgagacattagacaag<br>tcgtttaacctctctgagcctcagtctactcctctgcaaagtggaaatgtcacctccctacctctctcaaaggaatgctctaat<font color="green"><u>GAAAATACCTGGTGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>GAAAATACCTGGTGTA</u></font>ttatacatgcagaatgcatggtttgccaggtccacaaaacagaactaacatggtgtaaccttgcaggattgtctcag<br>gaacttcatttcaacttagaaaaatgattcccaaccaggcagagtggcccgtacctgtagtcccagctacttgggagcctgaggcaggtggatcacttga<br>ggccaggagttccaggcctgcctgggcaacatagcgagacctcgtctcttaataaagagaaagaaagaaaaatggttctcaatttgcattaccaatcatt<br>gcttacaaatggtgtttcctgagtttcgtgtctgaaatcgcaaataatcatagaatgtttcagactggaagagaacttggaagttaaaagagaatcgccc<br>aagtcgt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	429	106	NA	intron:HKDC1:NM:025130:4/18
0	chr11	88188747	88189383	1000884	0	+	Yb8NBC409; RIP_Alu_chr11_088_01	TCAAAACTTGCGGATTTTCC	TGCTGAGCTATACTGGTGCAA	SINE	Alu	Yb8	ggcccataattttgatgtatagaaggttcaagattggtcatctgcatctggtcagagtctcaggctgatttcacttattgtggaaaataacagaagggaa<br>gcttgtatgtgcagagatcacaaggtgatagaggaaacaaagaaagaggggaggtgttagcctctttttaacaaccactgcttgtgggaactaacagagt<br>gagaactcactcatctctgacagtgggcattaatctattcatgaggaatcggttcccatacccacatacctgtcattaggccccacctccaacattgaaa<br>tcaaatttcaacattaaatgtttgggggacaagcatgcaaaccagagaaaaaggtcacaaatcagaggcttcagcccctgcctt<font color="green"><u>AAGAAATTGGAAACAG<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAGAAATTGGAAACAGGCTGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTCTGGGAGGCCTAGGCAGGTGGATCATGAGATTAGGAAT<br>TTGAGACCAGCCTGGCCAACATAGTGAAGCCCCATCTCTACTAAAAATACAAAAATTAGCCAGACATGGTGGCACGTGCCTGTAGTCCCAGCTACTCAGG<br>AGGCTAAGGCAGGAGAATTACTTGAACCTGGGAGGCAGAGGTTGTGGTGAGCCGAGATCATGCCACTGCACTCCAGCGTGGGCAACAGAGCAAGACTCCA<br>TCTCAAAAAAAAAAAAAAAAGAAAAGAAAAGAAA</font><font color="green"><u>AAGAAATTGGAAACAG</u></font>aacaaatgaagataaaaataagcagaaaatagcaaataaaaatcaaagca<br>aaaaatcaatgaaagagaacacagaaaaacaatttaaaaaatcagtgaatcaaaaaagctagttatttgagaaaaatcaataaaactgataaatctctat<br>ccagattggtccaaaaaaaaaaaaaaaaggaaagaaaaggcacgaataaccaatatgagtttttagagaagttatattgctacaaattatataatattaa<br>atggatcataaaaaaacagtgtaaacaattttatgcccacaattttgacaatttaaataaaatagaaaagttccttcataattaattctggaagaaacag<br>ataactctaacagatctatctatctgtctgtcgg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	61	731	406	NA	intron:GRM5:NM:001143831:2/9
0	chr11	6837936	6838542	1000885	0	-	Yb8NBC622; RIP_Alu_chr11_006_01	TCAAAACTTGCGGATTTTCC	TGCTGAGCTATACTGGTGCAA	SINE	Alu	Yb8	gctgcatatatgtcttcttttgaaaagtgtctgttcatattctttgcccactttttaatggcattctttggtttttactcataaatttgtttacattcct<br>tatagatgccggatattagacctttatcagatgcctaatttccaaatattttcttccattctataggaagtctgtttactctgttcatacttttgctaat<br>gcagcacattttacttgcaaaataatgtaaaaaaaatattgatttcattaataggagactgattcaaaacttgcggattttccgtagattacaatggaat<br>acaatgtaactggggatatgcattaatatttatgtaaaaacttaatatggacacataacacccaaatatttctttctaatacagtcttccattaga<font color="green"><u>AGGA<br></u></font><font color="red">GCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AGGA</u></font>attccc<br>ctgcacaaactctctctctttgcctgctgctatccatgtaagacgtgacttgctcttccttgccttctgcctgattgtgaggcttctccagccatgtgga<br>attgtaagtccaattaaacctctttcttttgtatattgcccagtctcaggaatgtctttatcagcagtgtgaacatgaactaatacagtaaatttgcacc<br>agtatagctcagcattgctgaaaaatacctgaaaatatggaagtgacttcgaactgggtaacaggcagaggttgaaacagtttggagggctcggaagaag<br>gcaggaaaatgtgggaaactttggaacttcctagagacttgctgaatgaccttgacaaaaatgctgatagtgatatgaacaataaagtcc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	451	357	NA	intergenic
0	chr11	58219021	58219323	1000886	0	+	Yb8AC1551; RIP_Alu_chr11_058_01	TTTGGGGAATCCTAATGCAA	TGCTGCTAAGATGAAGCAAAA	SINE	Alu	Yb8	gacatcagtcttctcaggaccttggattggaacttacaccattggctttccttgtttggctttcctgtttccagcttgctaactgcagatcttggaaatt<br>ttcggcttccatagttacatgagccaattctttattatgaatctatacatacctacatctatatctttatgatgatataaataaagacatagatgtaggt<br>atgtatagatttataataaagaattatctttcttctattgctttttttcctttggggaatcctaatgcaatagataactggttgaataaattctggcaca<br>tacttatgatgggatataaaaagaaaaggaaatgagaaatatgtttactgttaagacatatttcagggatatatgtttcaggaac<font color="green"><u>AAAACAAGTACAGAG<br></u></font><font color="red">GCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAACAAGTACAGAG</u></font>cagtgtgtatattttgcttcatcttagcagcatattaaaaagtggaaggataaaccaaaactcataaaaatgcttaatatag<br>ggggagggagaataaggataaaagcgataggtataagtgctagatttctttggctataacttgtcttatagatttgactttgaaacaatataaatgtttt<br>tcttaaatataaaataaaattagatgagatattaatgggtataaaaataccattagaaagaagaagatctagtgttcagaggcacaatagggtaactata<br>gttaacaacaattcattgtatattttaaaacacataagaaaagtagaactcggatgttcctaacacaaagaaatgataaatggttgaggtgatggatatc<br>cca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	50	500	182	NA	intergenic
0	chr11	19339351	19339352	1000887	0	+	Yb8AC1583; RIP_Alu_chr11_019_02	ATTGGAACCCAAGTCCACTG	CCTGGTGTATTTTGTTGGTGC	SINE	Alu	Yb8	actgcccctgtcctcgcaaagctcagtccaatggagcaaacaggcatcaagtggatacttaaataaatgtctacttaggtcccacaaactggcagatgga<br>atataccagagaagatggagttcttgacaatggaaaacaggaagcataatgatgaggtggaaaaaactgtgacaactggagtgatctgagtttcaatcct<br>ggcctcagaaagtcctgggaaaaagtccagaaatcttgggaaaattttgtaacctcgctaaactggcttagatactataaaatgaggatggcaatagttt<br>ctgccttgtagggttgtattaggttagataaaatgagtaaagtacttcgcacaacacctggtgtattttgttggtgctgactaaa<font color="green"><u>AGTGAGCTCTTTTTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AGTGAGCTCTTTTTT</u></font>atgtctctcagcctctgctaagcattttgttattgaggttttagtgggtctactttgggactaccatttcttgtc<br>catagaaatctgagaaaaagtcacactttacagtggacttgggttccaatcccagcatgtcacctctcgagtgacaggcatgactgggtgtcacatctta<br>tccttgggtatcagtttgctcctggactggtgtgagattcattgacttcttggtctatctagccttttgtgggcatttggtatctaggttgcttttgggg<br>atggggggatccttctgcacagaaggtaggccaaagttccgggctctaaagtgtcttcctccctggatgccatccacagtcctgaggtcactacatgaag<br>cccagggagc	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	169	NA	intron:NAV2:NM:001111018:1/38
0	chr12	126068592	126068805	1000888	0	+	pAlu12-127226481; Yb8AC737b; RIP_Alu_chr12_126_02	AAGCTTGCAGTAAATGACAGAGG	GTACTACCCCAACTCACTCATGG	SINE	Alu	Yb8	tcagaccctgtctcaaaaaaaaaaaaaaaaaaaaaaagtaccactgttacatggtaacaatttctctttgaggggtatcaaaagtgctgggcatcatcag<br>aagcaagatttgttgttaactggttgagggggattctccgtctttctccactgaataatctcaccacgagaaacttagtgcttctctttcttgttttttg<br>gggcagtgtatctggctgtagtaggagtgcggggtttccctaatgcttcatcttgtataaccgaacaacattaccaagacagtattttttatgcagcaat<br>cacaaggaatttcccaataaagcttgcagtaaatgacagaggaactctgctctacgatgactccagaaggaggctgcttgtgggtc<font color="green"><u>AAGAACCCAGCTGC<br></u></font><font color="red">CCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACC<br>CGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAACCCAGCTGC</u></font>actttgagctgcaatcattccttccttcctttattccaaagactagccaatggctgagctcccaacaacctg<br>caccacggagatcaggatctcggaagggcagggaagtgtgggtgcagccatgagtgagttggggtagtaccaggagaagaggccttcaggttcagggcga<br>tcattacattctgtaagatctgtgctgtcagggagagcaggctccagctactccacctttttcattttagtgatacagaaactgagtccctgagatgaac<br>aatgaattaatcaaggtaatggagtttattttcaaagaattcagaatgattttcaaaaacaattcagatcatgttgctcctctcctcaaagtcttccaat<br>tgcttcttaactcc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	451	223	NA	intergenic
0	chr12	60022808	60023066	1000889	0	+	Yb8AC1613; RIP_Alu_chr12_060_01	CCTTCCTTGCTTTTTGACCA	AAGCCTTGCCTTGTGCTTTA	SINE	Alu	Yb8	tcccccttccttgctttttgaccacacagactatcattaagatttctttccagttttcaggacaagaacgactctcattttggcgttggtaaaatgactt<br>acaaagacttacaacgtgtaattgcttataagtttttcagcttgaatgtttggtcttggccagtcagccaatcgttactcaaccttgaaagattcaaaga<br>acttcattaaggagtttctgcttttgttataaagaaaagagggctaggtgtggtggcttatgcctgtaatcccagtgctttggaaggccgaggtgggagg<br>atcacttgagcccaagagtttgaggttatagtgagctatgatcatgtcactgcactgcagcctgagtgacaaagcaataccttgtctt<font color="green"><u>AAAAAAAATTAG<br></u></font><font color="red">AGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCG<br>CGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCAC<br>TGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAATTAG</u></font>atcatactctttttgccaaaatataaaat<br>aataaaaataattaaagaaaatagggctaatctattttacaggcatggatcacagtaaatatgcttatcatttttttatcatgaaatatgctgagaattt<br>acataaatagcctttataaaatatgaagaacatttattataggacagctgaaggatttggaatgttaactacagaataaagcacaaggcaaggcttttcc<br>aataaatgccttaggaatctcagtggttcacggctaattatcattatttcatttaggagaggtcaggtatcttacaattgtgatataggtactaccataa<br>tggtcactgagtaatatttatgtgaagttactgaaggagctctcacctttgtagaaata	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	892	621	NA	intergenic
0	chr12	10594769	10595081	1000890	0	+	Yb8AC1617; RIP_Alu_chr12_010_03	CATTCGGGTCTACTGCGTCT	GTGTGACAGAGCCCTGACCT	SINE	Alu	Yb8	ggcaatcagtgtgtgaataggtaataaggctgactggaaaacaaactagtcagacgaggagaggatttcaaatggagatcaagtcacataacactattgc<br>tttcactcttactttcctcttctcataatcttccaaaagtaaactctggagaaaaacatcagaggatttttcaaatcaaacaaggagtcgaataatacat<br>tattttgacaagagttatgtgaatagaaaccccaaaataaagatcttacaaagcctaaaacatatccaaatttataccttctttagatcattcgggtcta<br>ctgcgtctcagtgaattaggagtgataagtgcatattccacaggagataccttcttgtcattctcttctgagaaataaagtgaaac<font color="green"><u>AAAGATTGAGCCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAGATTGAGCCTC</u></font>atcacaatagtgcgtagagatcagaggtcagggctctgtcacacaggacggcctggagtttgtcgtaagccag<br>tgaagtagacggtggtggctggcaggttcatcacccagttatcctagcgcctcacaatcttcacaaaggcacccatgctgccagtgaagcgcgtcctggc<br>ggcacagcggataccatttggagacaggtgcaggggctccaggacaccactgcggcacaggaggccctgccccgtggctcggagggaggagggcgattcg<br>gcttaggagaggtccagagtctggagtgaggcttcagtcccagcagggcgctgagagcgcaggcggaccttcaccacgtccaggggtgtcctggagatgg<br>aggtgacggctgc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	483	156	NA	intergenic
0	chr12	29464688	29465019	1000891	0	-	Yb8AC1635; pAlu12-29473598; RIP_Alu_chr12_029_01	AAAGTTTATGCTCCCGCTGA	AGAGCTGGAAGGAAAAAGCA	SINE	Alu	Yb8	ggacagaaatacaaatgtgctgccagccatgcttggagagcctaggttggttggtagctgtgctgcatctgcaatgtcatggccctggctagttagtctg<br>cagcacccagacaacattattatagaggctccctggccacaaaacagtgggtcctggcagcagtgcattctaactttaggtctgtgcctgtgcctgtggt<br>gcagggtctctgagactgcttgttcaagggctcacaatgggtgtacccatctgctctccctatgtcacaagaaacattaaagtttatgctcccgctgata<br>tagtcttcaccttgcaaatcaatgaacatattaggtgaatgaaactttctgtccttcaacaatacacataccactaatagtttttcatttt<font color="green"><u>AAAAGCTGC<br></u></font><font color="red">TTTTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAC<br>AAGGTGAAACCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGCTGC</u></font>tttttccttccagctctttttaaaataagtgactaacaatgctgccctctctttcctca<br>tctataaaatggagataatgatgtcttaacatgtgtgcatcagcttctgaacatatcacctagagcactggagttgctaaacggtgggtctccttcctcc<br>ttgctctcctctactgactgatcatcatacctgctcccaaaataaatatagaaagttctgaaaaattttaaagaatgctcttggaaagaaaattttttct<br>ttgatttcatctgaatcttgtttccatgtgatattgagacattatctgaaaattccttcctcagtttaaaggttgctcagtactaaaattctgatatttc<br>taatattggtctcccagaagtagtgagatggt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	480	139	NA	intergenic
0	chr13	109610510	109610807	1000892	0	+	Yb8NBC437; RIP_Alu_chr13_109_01	GGCGGTGATGGTAAAACAAC	CTTCCCCAAGGAGCCTTTTA	SINE	Alu	Yb8	atttggccctaagtaggaaagaaatcctatcacatgctataatatagatgaaccctgaggacattatgctgagtgaaacaggccagtgacaaaaggaaaa<br>atactgtatgattccacttacatgaggtgtctacgggggtcaaattcacagggacagaaagtagaatggggggtcaccagaggctggcaggagggatgtg<br>gagtcagtgtttaacagggacagagtttgagtttgggaaaataaaaaagttcaggagacggatggcggtgatggtaaaacaacactgcaaatgtacttaa<br>tgccactacactgtgcactgaaaaattattaagatggtaaatgttatgttatgtccattttaccaaaattaaaaataactttt<font color="green"><u>AAAAAAATTCATAGGGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AA<br>AAAAATTCATAGGGG</u></font>cagggatgattcagaaaacaatgtcttaaaaggctccttggggaagctgttactttttaaaaagaaagattgagcaacactgttc<br>caacgcttgctgaagaatcgagtggcatcaccttgctcacaggaggaaaggcaaccaccacagtgagtcaggcaaaatataaattatctctgcaagcctg<br>gcattatctcaccatggttttgcaccacaattttaaaagagaatagctgactcttttttctttttgagacaggttctcactctgttgctcaggcaggagt<br>gcagtggtgtggtctcagttcactacagcctcaacatcccaggcttaagtgatcctcccacctcagcctccctcgtagctgggaccacaggctcacac	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	498	183	NA	intron:COL4A1:NM:001845:49/52
0	chr13	69357073	69357373	1000893	0	-	Yb8NBC450b; RIP_Alu_chr13_069_01	TGAAATCTATCTCGTAGGAAGGCTA	CCGCTGGTTACCAAAAGATT	SINE	Alu	Yb8	aggagtttgctaacatatgcaagcaatgtaagaaactcaatgggaattgatattttctcttttagcaataacacataatgatgttaaaacaactaatttc<br>cagaacctacattgtaggtaccataaacaaagtatcattaaaatgaggcttgatggaaaaataaaacagcaaggagaacttgagaaattcaatgaagtgt<br>aaagaaaaaaaaaaaataacacctacataataatacgtaggtaagtgtgaaagatctgataccagctcctgaggtcccatttccttatagcagtttgtac<br>aaacaacgccgctggttaccaaaagatttagtgtaacttataaaaatacaaaattattggaatattatttaagttagatgcagagat<font color="green"><u>AAAAAGAAAAGAA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGCGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAGAAAAGAA</u></font>aaagtgctgtagtggtattaaaactattatcagagctgtctgaaaaagaaatcaaactataaaagtctatagccttcctacgagat<br>agatttcaatttgactctaagttttctggaggccaaataaaaagagaaatctgatcaatttcataatttacaacatccatgataaaagcaaaccaattta<br>ttcaggagaagtgcaattattcttgctactaaaacctgaaagaaacttctcccaagggtcaccataaagaggacactataaaatataatgaaatatgcct<br>tgaacagtatctttatgacagataccactaggagtttcatagagctgttttttatgacatccctcactatattttgatggcctagctatagagttctgtg<br>t	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	61	500	186	NA	intron:KLHL1:NM:020866:4/11
0	chr13	106722551	106722862	1000894	0	-	pAlu13-106761081; Yb8NBC463; RIP_Alu_chr13_106_01	GCCAGTGCTTGGGTTTTAGA	CTGGCAATGAATTTCCCTTT	SINE	Alu	Yb8	ttattctcatttttatattgtagtttatacacgtatatgtgtatatgactccgactttccttagttttaacaaatgtgttgacattttgaggcaacgcac<br>gatttacaccctttgttttcttgcctgaaagttttctcaaggcttttgatgattttgagagtctgtgaaatgaatactacctttggatggctgaaaatat<br>attttgatactcatttatactttctgatgatcctacaaagtcattacatgaactgtatcacacaaaacaggaactattaagcaaactgacttcactacag<br>ttatgaaatgaacagaattttataaggaatcatataaatgtaagtgaagagatagctccaaaaaatactggcaatgaatttcccttttt<font color="green"><u>AAAAAATTCTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAAAATTCTA</u></font>aggtctgcttattttgtcagcaaacatgttaattttatatacgtaccagtgtgtatacatttgtgtgcatatattat<br>atacatgtacaaatatgatattgagacattcatgtctttgcatgtactttatgcttattttattagccttcaaatgaagtacactttctctctaaaaccc<br>aagcactggcttaggaagttggagacccgcctgaatgtgagtcctgaggtctcatgattattcttacttataacatatagagagttatgtgctcatatta<br>attcatttgtcagaaagttcctcgacaaagcatagtttgccatgaagcttaggtttgaaattggagtgtgagatatttgtatatataaatatataaatat<br>atatatatatat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	56	543	220	NA	intron:FAM155A:NM:001080396:1/3
0	chr13	94049135	94049442	1000895	0	-	Yb8NBC564; RIP_Alu_chr13_094_01	TCTGAGACACATGGATTACTTGC	TGAGGAACCACCTCCTACCA	SINE	Alu	Yb8	tcacgcccggccatgtactttcattttcaataaatccctgctttcgttctttcgttgcttcattcttttgttgcttcattcttgccttgctttgctgtgc<br>attttgtccaattctttgttcaaaatgccaagaaactggacaacttgcagtcaagaccctccactggtaacaaaagtaggagctcaaaattatttcatga<br>ataaatgtatataaattattttcatttaacaacaagcttctataacatataaggaagttctcataacagacctcatcatttagaaaaaaaaaatattgag<br>gaaccacctcctaccatatacacagcattttcagtatttctggctgaccaggaatatgctggaagtattaatattttcggatttttt<font color="green"><u>AAAAAAAAACTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAAAAAACTGC</u></font>aaggattctttattatgcaagtaatccatgtgtctcagaaaaaaattcacagtcaaaagtatataaagtgggctgggcg<br>cagtggctcacgtctgtaatcccagcactttgggaagtgaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaact<br>catctctactaaaaatacaaaaactagccaggtgtggtagcatgcgcctgtaatcccagctacttggaggctgagatgggagaatcgcttgaacctggga<br>agcagaggttgcagtgagtcaagattgtggcactgcactccaggctgggcaacagagcgagactgtctcaaaaaaacaaaagtatataaagtaaaaatta<br>aactcccc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	58	464	143	NA	intergenic
0	chr13	97519252	97519557	1000896	0	-	Yb8NBC570; pAlu13-97557786; RIP_Alu_chr13_097_02	CAGGTGTTGTGGAAGGGAAT	ACGAGGTGATGGCAAGAGAG	SINE	Alu	Yb8	ctaaaaatacaaaattagccgcgcttggtgcccgtaatcctagctacttgggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcggt<br>gagccgagatcgcgccattgcactccagcctgggcgacagacagagcgagactttgtctcaaaaaataaaaaataaatttaaaaaaaggcttcacaagaa<br>ttaaggcccttgaagagtgagaaggaggtccgttttcacactgctgataaaaacatatctgagactgggtaatttataaagaaaaagaggtttagtggac<br>tcacagttccacgtggctggggaagcctcataatcatgacagaaagcgaagacacacctcacgaggtgatggcaagagagactcag<font color="green"><u>AATCAAGCAGAAGG<br></u></font><font color="red">CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AATCAAGCAGAAGG</u></font>ggtttctctttataaaagaagatggtctcgcgagacttattcactaccacgagaacagtatgggggaaccgcccccatga<br>ttcaattatctgccactgattcccttccacaacacctgggaattaccggagctacaattcaagatgagatttctgtggggacacagccaaaccatatcag<br>aatgagaaagcaattcaaggcagagagtaaaacctgtgcatagctatggaatcctaaatattctgacgtcatcaaggaactgcaggatgccccgcgttcc<br>tgaagaacagggtgcatggtgggagggcaggtgctggcaagtccgtgtggagtgggcacggcaaacacccagcaggtagcggagtgtggactctgttctc<br>ttccct	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	478	158	NA	intergenic
0	chr13	24168563	24168883	1000897	0	+	pAlu13-24200462; Yb8AC1674; RIP_Alu_chr13_024_01	CTGAAGCTCCATCTCCCAAG	GAACTCACACAGCCCCTCTC	SINE	Alu	Yb8	agaaaccacatctcttacgtaaaaccaaagtgaaaatagagtgcgcaacagtcctaaaagactgttttaggatgagtattattatactaataatactagt<br>gataataggagctattctgtgctaatttccacaagtattaaattattcattcgcacgacaacactgtggggtggctagaggatgaggaggttgaggtgcc<br>gcgcatcagtgcacagtgtgaagatggggttagatgatgcctccatcagcagcaggacttggagccctgctgaagctccatctcccaaggtaaaggcatg<br>cccagttgcaaaagggagaaaaagcaggttccatgaggcctcatgtacaagttggaggagaaagtggctacacagagtgggact<font color="green"><u>AGAAAGGGGAGAGGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGGGGAGAGGGG</u></font>ctgtgtgagttcctgctgaagaggtcggaggtgctgtctggatgctgttagggtcattttata<br>tctacacatgagcggtgctcagcctcaccagggctttagatgtcatggccttggaaggagacgtctctgcgggaaggaaataaaatggaaagcctgtgtc<br>ttattgattagaatggtgatgccccaaacacactggtctgttaagacatttgaaacagtttacggcaaattggaaaatgttttataaagttttatataaa<br>gatgaatgtatttaatttaaaagattatcctttgtagccaccatgattaagggcagggactctggagcctgctagcctgggctcaaatcccagctcagcc<br>accagatagccacctattgct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	480	143	NA	intron:ATP12A:NM:001676:11/23
0	chr13	77492166	77492475	1000898	0	+	Yb8AC1675; RIP_Alu_chr13_077_01	TTTCAAGATGTCATGGGCTG	TGACATTTGCTTTTCCAGCA	SINE	Alu	Yb8	taatgatgcaaacagtgccagactctttgcattgatcagatcacctctggaatattgttttaagttctaggtgccttaaagcatatggatatatattcat<br>attagattgctaagagttgaagtcatgtcatagagaaaacaaacaaagaatgtttgctggggtgagggtggggtagcattatagctatctttaaatatta<br>aatgattttccaagtggaatgtgaccaaggactggtatacaagatataaggttagggtgaatgaatgataactaagccagagcatattttttttaacatg<br>aggaagatatttttaacagacagcgctctttcaagatgtcatgggctgcctcattaggaggcaagtgtttagctctaaaggcattc<font color="green"><u>AAGAAGATGCTGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAGATGCTGGA</u></font>aaagcaaatgtcagaaaagaaatgtcagaaacaaatacaagttatctcattcctgagaaaactataactttcctgg<br>tagatccacaactttggatagggatggtgaaaggtgccaataattttgcagatggtctcaaaggcagcaaaggcagatctgcttttatgggtgtttttaa<br>gctgttcagtctacttaatttgctactgtaaatgttttgcatatttaaaaattgggcttaaatttttttaaaaataactttggctcaccctaatgaataa<br>ctcccagaattaaaaaattgaatagcaaaaacaaagtagttgttgcagagaaccatagtcgtgggaaccatagttgtccttgcttttatttattagtcac<br>ataacctttg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	409	85	NA	intergenic
0	chr15	59752053	59752166	1000899	0	+	Yb8AC734; RIP_Alu_chr15_059_01	CAAATGTAATTCCAGTGGGTTG	GGCTCACAAAGCATGATGAATA	SINE	Alu	Yb8	aactccacctcacccctttcaactaacttttacaaataaaacagcgctgtcatacctggttaactgtttatattctcatatcatatcacaggtaagataa<br>attctgaatgaattagttgactaaaaaaaaaaacagaaaaattaaaagaataaaagtgaatatttatgagaatccttaagatgatatgaggtactatgct<br>ataaaatgaagaatgtgttacaaagtaaaagatcaacaaatacaactacctgaagacctaaagtgttatatagctaaagcatagtgtagaataaagcaaa<br>taacaggctcacaaagcatgatgaataaagcattggatgaatagtataattatataaagaactcacaaaattattttaaagcattaat<font color="green"><u>AATATCCCAATA<br></u></font><font color="red">GAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AATATCCCAATA</u></font>aatatgtagataaagggcatgaaaggatagttcatgaaagagagtatactacagtattagtaaatatttataaa<br>aatattcaattcacttaaagaaatagaaattgaaattattcacctgattttgataaaaaaactgataatacccattattgatacagcttcaggaaaattg<br>atattcttaatattgctagtggccataaaattattacaatatatttgtaaagcaatttagcactcttaatcaaaagctatcaaaatatttttaattcagt<br>aatgacacttctgggaatctagcctaagaaaataatctgatgcctggaaaaatactgatgcatgaagatgtccaattcagtattataactgcaaagacat<br>gaaactatacacaa	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	653	527	NA	intergenic
0	chr15	32534281	32534594	1000900	0	+	Yb8AC1691; RIP_Alu_chr15_032_01	CCTCAGTTGACGGGGACTAA	AAAATCTGCTTGAGGCTGGA	SINE	Alu	Yb8	gctttttcttcccttattcttttcactaagacctcagcctaatgttgaatagaaatggtgagaaaagacatccttaccttgttctcaaccttaggggtac<br>tcatcagtctttcacaatttagtattgtatttactgtaggttttgtcaacttgaaagtgttccttatctttctgatttgctaagatctttataaccataa<br>ctaacaaatgttgaattttatcaagtgcatttctgcatgtattgagatcctccaggtgctgggatgtcagtgctcctgttgcagggccaggcaacaagat<br>ttgtatgtgttttcacacaaaaagctgaatctaagctgcctacataggcccaggaataaatgcagcaccctcagttgacggggactaa<font color="green"><u>AAAATTCCTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGCTCAGGAGATCGAGACCATCCTGGCTAACAAAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTCCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAG</font><font color="green"><u>AAAATTCCTCCT</u></font>ctccagttggagacgtgacaaggaatctcggttctgctctgattctgcacaccgagcacataatccagcctcaa<br>gcagattttgaactctaatctgaaatacaatcataataatagagttcctgatttcagacattaacatcgaagttgtttttgagttcattatagaatcaaa<br>ggctaaaatattctgaagagacatttctgccatacaggccacatgctatctttaattgagaataatggaagctaactctcctaaactcttcttactgtat<br>tgaaatttaagtagactatatgatagagcatatattttttcattcattcaacaaatatttattgaatgtgtctgttaggggtccaggcatttttcaggct<br>ctgatatgatgaaa	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	441	115	NA	intergenic
0	chr12	127498209	127498494	1000901	0	-	Yb8AC1695; RIP_Alu_chr12_127_01	TTCAGAAATGGGAGAATGCG	GTTTGGCCTTCATAAGCGAG	SINE	Alu	Yb8	gacctcagacaaatgagtgagcccggccaagagcagaagacctgcccagcggagcacagcacaaatgacagacacggaattgcaaggtaaagaaatagtt<br>gttgctctaagtcatgtggttttcggagtggtttgttaggcaaaaagctgcataacagttcagtagctatatcattagggttcaaatcccagctccacca<br>actactagttatgtgattttgaaacagtgatgtaaccttcaatgcctcccaccaattttcaccagtgacaacaacaacaaaaaaaattgtcttactttta<br>ccacatctaacattcagcaggttatttgtttcagaaatgggagaatgcggtgggatcgttttaggaattatattactatgcttttct<font color="green"><u>AAAAAGCACTTGA<br></u></font><font color="red">CCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAA<br>AAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGC<br>CGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGCACTTGA</u></font>a<br>ataatatcatacgtctaggagtgtggtgactctgactcttactcgcttatgaaggccaaacgttaaatgagaaattcagtgagccagttggcaatttgaa<br>attaatcatagtgggagtatttacacctgagaaatgggcaaatgctatgcataagggtttctattttcccctccctgaagagcaggttgttaaatattga<br>ccagaaaacctctgtatgccttccttatatactaatcaaggcaacaggtatagccttttctttcataaacatttgttttagaacctcagcatccatttcc<br>ttccctgatggcaccaaattattttcagggaattacctcttgcctgttgtataacgtcttgataagacagtaattttaagggaccg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	434	133	NA	intron:TMEM132C:NM:001136103:1/8
0	chr15	56700158	56700458	1000902	0	-	Yb8AC1703; pAlu15-56491897; RIP_Alu_chr15_056_01	TGGTGAATGTTAACAAAAGGACA	TGCCAAGTTAGAAAAGTAAATGGA	SINE	Alu	Yb8	tttgcttttatctgttgtttgttttctttttctgaagtagtgttggttactgctctgttattggcagattgaactacttttttttttttttttttttttt<br>tttttgagacagggtctcgctctgttgcccaggctggagtgcagtggcatgatctcggctcactgcaacttccacctcccgggctcaattgatcctccca<br>cctcagccccctgagtagctgggactataggcatgtgctaccacacccagctaatttttgtatttttttttagagacagagttacgccatttgcccaggc<br>ttgtttggactacttttaatagtaatttgtgtggtgaatgttaacaaaaggacatactcaaaggacatactaaaaagaatcct<font color="green"><u>AAAAAATACATATTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAATACATATTCTT</u></font>tagttacttattgtgaaaatgtaactatcttccatattttaaaaatcttaactttaaatatttagttaatgtggaatccatt<br>tacttttctaacttggcaagttataactatttcacttgtcaaatttactttggtagcagtgtaagcaattgtttgcacaatactttttttttttttgaga<br>tggagtctcagaaaaacctgtcacccaggctggagtgcagtggcatgatttcagctcactgcaacctctgcctcccaggttcaagcaattatcctgcctc<br>agcctcctgaatagctgggactacaggtgtgtgcctccatgcctggctagttttttgtatttttagtagagttggggtttcactatgttggccaagttgg<br>t	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	487	169	NA	intron:ADAM10:NM:001110:11/16
0	chr15	65321534	65321853	1000903	0	+	Yb8AC1707; RIP_Alu_chr15_065_01	TCATTAACCAGCAAGCGAAA	TATTTGACAGAGCAGCACCC	SINE	Alu	Yb8	agtaaatattcatttccttcttcccatctcactttttttcacatttgtgacagcactcctgactagaggtaggttacagatgcactgaggagttagtaag<br>atacattacaatcaggaaataaccatctcctttaagctgctctagccttgcccttccaccccagaccaccccctaaaataaagttgaaatttttcttttc<br>cactgctaaggcatatgctgagacagaagagaaggcaattaggaaaattataggaggcagcagagtctgacgtcagctgaaaggaaaagtagctattatg<br>aaagaaaagaactgagcaaaatatgacttaggaaaaattcaaaacctagagttttcattaaccagcaagcgaaaagacagactttt<font color="green"><u>AAAAATCATATCGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATCATATCGG</u></font>attcatactgttgcaagcaattacaatttcttacccacaacttcatgagaatgtcatacaaggtgg<br>gtgctgctctgtcaaatattttgcagtagttgtgaaaaggttagtccctaaatactgaaagtagattatactgctccagtggaaagggactttgtagcat<br>ggtagtatttaaaggttaaaactgtgcaacattagagttgactttacagacaaatgtcaggaaactcatatctgagattccctgtgtaatcataccccag<br>tcttctggtgcaagtttatgcagtatttgttgcagtttatatgacaggtcgatcactggagtagtatggacttgctgaggtaagagtcactggagtagca<br>tagacttgctgagggaagag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	56	465	131	NA	intron:FLJ11506:NM:024666:1/10
0	chr16	15822993	15823311	1000904	0	+	Yb8AC1737; RIP_Alu_chr16_015_01	GTGCTTAGTGGGACCTCAGC	CCTGCCATTACCTCCAAAGA	SINE	Alu	Yb8	atactatctacagtgaaactttggtctctgttttaagtgatctttttctggaacgaattatcttcagatagtaaaaatttccttcatttcatgccattta<br>gttcagttagtgtaatgaaaggtcacgtaacaaaatgttaatggtgatgagttttggatgatagaatcataggtgccagcaagttctcttttacttaaat<br>atatgtttaagtttttctagaatgaatatacaatattaaagactttttcaagttacaaataaattttttcagagcactgtagaaatgcttacccatctgt<br>cgctccccctccttctcctttgctaacagaattttctttctttttggtatttagattaaaatgtgcttagtgggacctcagctccagaaaagaa<font color="green"><u>CCAGGA<br></u></font><font color="red">ATTGCTGGGTATGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAGACAGATACCTGACT</font><font color="green"><u>CCAGGA</u></font>gccatcactttacaacctgagattacagctccaagattgcctttgcaaggctccacctgctggtctttggaggta<br>atggcaggccctgcctagaagggccaagattctggtcctacctgtggagtctggctcactgtcagaaagttggggcacttatacctgagtccctctatct<br>tgggggcggggtcgtggcatctctcaggcacacctggattccggcctcaagaacttccagaattgggctcctctcaactcccaactcagatccctgggtt<br>cccacctgttggtgccctttcagagggggtgtgagttttcgagtttcttgtactcttcgcctgacctggtacacttgtttgcattaactgcctagtccct<br>ctgtttgacttgggggtgg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	446	136	NA	intron:MYH11:NM:022844:3/42
0	chr17	64717906	64718224	1000905	0	-	Yb8NBC48; RIP_Alu_chr17_064_03	AGGGAACAGGTGATGTTTGG	GAGGATGCAAAAGCATGTGA	SINE	Alu	Yb8	tgagtgggtaaaggaaatatggcatatatatatatatatatgtggcataaatatgtggcatatatatatatgtatatatatgccattgtatatatataca<br>tatatataatgaaatactactcatccataagaaggaatgaaataatggcatttgcagcaacctggatggagtcagagaccattattctaagtgaagttaa<br>ctcaggaatggaaaacgaaacatcatatgctcttgcttataagtgggagctaagctatgaggatgcaaaagcatgtgaataatgaactttggggacttgg<br>agggaaggatgaggggttgaaggataaaagactacacattggatgcagtgtatactgctcaggtgatgtgtacaccaaaatctcag<font color="green"><u>AAATAACCACTAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AAATAACCACTAAA</u></font>taatttacccatgtaaccaaacatcacctgttccctcaaaactattgaaataataataataataata<br>ataataaagtaatagcataagctctacagatggcttttaaatgactataaaatttgtagatagtgtgtgcacatataatcctaaaacctaatgtacagtc<br>atgtgctgcataacaatgtttttgtcaatgatggactacagacaccacagtggtcacagaagatcataatcccatatttttactgtaccttttctatgtt<br>tagatatgataagatagagataccattgtcttacaatttcctacagtatagagtacagtaacatgctgtacaggtttgtagtctaggagccatgggctac<br>cacatagcctaggtgcgta	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	58	511	178	NA	intron:ABCA10:NM:080282:10/40
0	chr17	19484021	19484317	1000906	0	+	Yb8AC1747; RIP_Alu_chr17_019_01	TACACGTATGTGAGGTGCCC	AGAGGGGACATCCTTGCTTT	SINE	Alu	Yb8	taagccatgtttgtgccactgcactccagccagggtaacagagcaagaccctgttttcccctaaaaagaaaacattgtgctaaggaaaataagccatatg<br>caggcctattatacaaggacacttgtacaagtacgcaaagacacatcttgtatgattacacgtatgtgaggtgcccagaatagtcaaaatcataaagtat<br>agaggttattaggggattgaaagagagcaagaggggaattattgtttatgggtacaatttctgtttgggatgatgaaaatgatctaaaagtgaatgatat<br>tgatggttgcagaacattgtgaatgtacttaatgtcactgaattgtgcaccttaatggttaaaatagtaagttttatttattttatttc<font color="green"><u>AATAATAAAAA<br></u></font><font color="red">TGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTA<br>AAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGC<br>TTGCAGTGAGCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAT</font><font color="green"><u>AAT<br>AATAAAAA</u></font>tgcctcacttggatcacaaacatctacaaaattctacagataacatattagtcaaaagaagctgcatgccttcctgctaatattaggaacaa<br>agcaaggatgtcccctctcaccactcattttcaacatcgtaactgaagttttagctaatgtaataagacaaataaaggaaatgtatacatattaggaaga<br>aagaaattaagctgcctttgttcacagataacatggttatcaaggtagaacatcccaaataatcaacaaaaaagatttctggaactaataagtgattata<br>gcatggtatcaggatgaaagttattatacaaagtcaattattttactatacaatagcaatgaacactttggatttgaaattaaaattaaaaacacca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	662	358	NA	intergenic
0	chr17	40280046	40280339	1000907	0	+	Yb8AC1758; RIP_Alu_chr17_040_01	CCAGGAGAGGAGGGCTAACT	AAACAAGGGTTCTGCCAATG	SINE	Alu	Yb8	tccagcctgagtgacaaagtgagaccctgcctaaaaaaaaaaaaaaagaagaaaaagaaaagagagtttgccgtatggttaggcttagaaggtatcccat<br>tggacagggcacggtggctcatacctgtaatccctgcactttgggaagccgaggtgggcggatcaagaggtcaggagttcaagaccagcctggctatcag<br>ggtaagaccccgtctctactaaaaaaatacaaaaaattagctgggcatggtacacacctgtaatcccagctacttgggaggctgaggcagaattgcttca<br>accaggacctgggaggcggaggttgcagtgagccgagatggcaccactgcactccagcctgggctacagagcgaaactccgtctcaaaaaaacaaaa<font color="green"><u>AAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAG</font><font color="green"><u>AAG</u></font>gca<br>tcccattggcagaacccttgtttccagcccagggatgaaggtagccagttggtaattgtgaagaacctgcctggaaagagatggacctggaaaaacagga<br>gcagctcaggaaccagaatgtgttccttagtactcatgtgcaaaatatatgctaaattacatgcaaatcaatgtccaatcattataatctctggcaattt<br>ggtaactaatgctgttacactatctggtctaggacatttctggctccctggggccagatcctgctctgtagctcccacaggagaaaccatcacagaccaa<br>aggccagcgggggccccagcactcaaggactgtttctcccaccaccatctgtggacttttccagctgtttttcttggcccaaggatcacaccca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	999	706	NA	promoter:HIGD1B:NM:016438
0	chr18	37441996	37442319	1000908	0	+	Yb8AC1789; RIP_Alu_chr18_037_01	GGGTATGGGGCACATAAAGA	GCTGAGAAGAAAAGCAAAGAAAA	SINE	Alu	Yb8	attattttgtatttctctcttatttttaacctcccctatattttgttgagcaaattagggtccatcagcctggaattttcatacattcccacatccaaat<br>ctttcaaccttcctacataaatattcttctcgccatttttttcctctaactcaggtgattaagtttctctcctctaccaaggggactcgtcatatgtgct<br>ctgcatcacaaatcccctcaccttctcaagggctttgctttctcaattgccccctttctctcctacatcaacttctctcttttcaccaaattgttcatat<br>tttccctgccttcttcaccacctctgggtgtgtgtgtgggggtggggtgggggtatggggcacataaagataatccttcgtacatt<font color="green"><u>TAAAAATAAAATTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>ATAAATAAATAAATAAAATAAAAA</font><font color="green"><u>TAAAAATAAAATTA</u></font>aaattaaataaaatctgcctcccataactttagagtttcctacaaactacagtacattttct<br>ttgcttttcttctcagctaaacctgtgaaaagaattgtctgacatgctgtctctacttcttttttatgatttttagagacagggcttcactctgtcaccc<br>aggctggagtgtggtggcacaatcattgatcatagccactgcagcctcgaactcatgggctcaagtaaccctcccagcccagtctcccaagtagctggaa<br>ctacaggcatgcaccaccatgcctggctaattttttcccttttttttttttttttttttttttttccataaagacagggtctccatatgttgcccaaggt<br>ggacttgaactctgggactcaact	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	467	135	NA	intergenic
0	chr19	6103306	6103560	1000909	0	-	Yb8NBC598; RIP_Alu_chr19_006_01	TGGGTCCTATCATCCCCTATC	CCAGAAGGCATCTCATGGTT	SINE	Alu	Yb8	tttaagcatagttgtaaccatacagtgtataaagattttgatacctgctttgtcacctctgacatcaaaaatgcttaaaatgtgctcttcagagccatca<br>tttcaaaatattaccgagaatcccatccagaaggcatctcatggtttaatccacagctgtgggacacttaggttgtccccgactttttgccatcactaat<br>aacacttccaagaagtatctttgtgcataagccaaaatatattcatgttttggttttgtttctttaagtaaaactcccaaaggtagaattacaagctcaa<br>gaagaaatcagtattttatttttacttttgtttttttcacgattacagcctgggcaacatagcaagaaaccatctctacaaaa<font color="green"><u>AAAAAAAAAAAAAAATT<br></u></font><font color="red">GGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG<br>GCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGCCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGC<br>CACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAA</font><font color="green"><u>AAAAAAAAAAAAAAATT</u></font>agctgggtgtggtggtgtgtgctcatag<br>tcccagttaccctggaggccgagttgggaggatcgcatgagcccaagacttcaaggctgcccactggctgtgtgagcctcagtttcctcatctgtagata<br>ggggatgataggacccacttcacattgctgtcgtgaggttttacaggatcatacacgtggagcacaatgcttctgcacataatcagaaacctctaaatgc<br>tatctacaattattattttgtctgcaaaaagttcttcagctgaagaaaatcgagaggtctgagactgctagtctaatgggtgttattgcgtatgacctgt<br>gatcagaatgatttgttcgtgcatctatcctgcctgctaactagggcgttcatcc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	691	398	NA	intron:ACSBG2:NM:030924:4/15
0	chr19	22626863	22627023	1000910	0	-	Yb8AC774; RIP_Alu_chr19_022_02	TGGCCTGTAAACAAAGATGAGAG	TGGCAGATATTGGTATCTGGAAC	SINE	Alu	Yb8	cggtgaaaccctgtctctactaaaaatacaaaaaattagccgggcgtggaggcgagagcccgtagtcccagctactcgggaggctgaggcaggagaatgg<br>catgaaccccagaggcggagcttgcagtgagctgaaatcgcgccactgcactccagcctgggtgacagagcgagactccgtctcaaaaaaaaaaaaaaga<br>aaagaaaatttggaataaaatctgagtttctgaatctctaacaagctcaccagtaatgcccatgtttttggtccaagaaaactattttgtcaaacatcca<br>gtaagtggaaaagcctgtgtgtttttcagtttttctggcctgtaaacaaagatgagagctttcattttccaaagacagataaatgcaaagaaaa<font color="green"><u>CCTAAG<br></u></font><font color="red">GTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGTCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTG<br>CAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAG</font><font color="green"><u>CCTAAG</u></font>aaaggtcagctgccagattaaatgtgattgttt<br>atgcacatctgctgaataaagatactcagtaatgaagagaaaaataattaactctatagaaaaaaatctgtcacagagttcattaatcaagtgagttatt<br>aacatcaagtgcatgaagacaaatgtgctgatgcacacagaaggacacggcatcactgctatgatattgcccagccaaaagtaaattatagtctgaattt<br>aatcataaagaaacactggttttatgtaaagttccagataccaatatctgccatgttctgtaaattttaatagtgattttaagtagtctttctttcacac<br>cctaaagagcaagtatctcctaattattattatttttaaactttctgcgtaataaatgcca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	518	351	NA	intron:ZNF492:NM:020855:1/4
0	chr20	5891001	5891316	1000911	0	-	Yb8NBC93; pAlu20-5890901; RIP_Alu_chr20_005_01	AAGTGAGTCCCAGGGCCTTCT	CACACAGGCACTTGTTTGGT	SINE	Alu	Yb8	ttgatccttctcacttactgttcgtatcctgctatgggtatgcaaggtgctttgcttgcctcccacatgaagcacttattgcttcctctgtgcccatgcc<br>acctctcgctccttcaacaaccctctcattctgtcccacatgcccaatgccaatcctctccttttcaaaaggctttccagagttttctttaatccccagc<br>tttctcatctaggctccttttgcactttctgtagagtgtaatacttattatgccacacaggcacttgtttggtgtttggatctcaagaagcatttataaa<br>ttcagactgtggcagactgtatttgccaaatatgattgcaacaatatttatcttcaagactttttagaaccttgctactcctccatt<font color="green"><u>AAGAAATGAAGGC<br></u></font><font color="red">CGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCGGGAGATCGAGACCATCCTGGCTAACAAGGTGA<br>AACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAA<br>CCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATGAAGGC</u></font>taattccttctcctggaatttgagaaggcctgggactcactttgttaccaacagaatgtgacacagtgatg<br>ttgcacgacttctgagactagctcacaaaaggcaaggccatttctgcctaccaactgcacttcttgacctgaacctgtcagcagccatataagcagactg<br>agtgcctgagctgctatactgtgtgcaagaagcccaaactagcccacacagccacatggagaagaagatgcctggccagcccccagccaccttgctgtac<br>tccagccaccatctgactacaactccatgagaggcctggagccagaactagccagttgagtagttcttccaaactcctgatccacagatatcatgagaac<br>taataaaatgattggc	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	601	274	NA	intron:MCM8:NM:182802:7/19
0	chr20	14928988	14929305	1000912	0	+	Yb8NBC435; Yb9NBC53; RIP_Alu_chr20_014_02	TGAATGATTGGGACTGGGTA	TGGCTGGATGAACTTTCACA	SINE	Alu	Yb8	tttaaagatataaaagcaatactgtatattgttcagggctatatatctgtacaaactttaagcaattggctgaagggatgcatactaaattcatcattgc<br>agttactcttggaaagtggaatttgactgggaaccaagaggacttaattttatctgtaatggtttctttcagatgaaaaaataaaaggcttaaagccttg<br>aagggcaaatatcaactgaattcatgatgatgattgggatagaagaatacttttctacattaaattttttttattttcctcagaaagcaaaacaaaacac<br>aaacaaacaaataaaatctattatgaatgattgggactgggtataaatgaggtgtttggaattctggtgatgttctataacttcatc<font color="green"><u>AAGAGGTAGAAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGGTAGAAAC</u></font>atggaaatgttcattttgtgaaagttcatccagccatacaaggtaggattggtccactttgttgtatgt<br>gtgttatccttaggtggaaatttctggagcaaatatggcaaaataagaaaatttgacgtagtctgacataaaacttgacatacacagattattctttatg<br>cttttctaaaagcttgtgatattttaataacttcaaaagagatggttcattaataaaaatattttgattttggctgtattttgattgcaaatctgtgtac<br>tgcaaaacaatctcattacttgctttttctgtaccataccatgattttcacttcatcacaccttagcaaaagctgttggggaatgagaagacatgaatgg<br>tctggtaaatgctgttga	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	444	113	NA	intron:MACROD2:NM:080676:5/17
0	chr20	45452487	45452800	1000913	0	-	Yb8NBC445; RIP_Alu_chr20_045_01	ACCGTGACATGCGATTTACA	CAGGAACTCATCAGCATTGG	SINE	Alu	Yb8	ggatctgaggcaagtcctggaatccaggtgacaggaactcatcagcattggagtaaaagagatattcaaaacagagtgaagagtaagtataaataacagg<br>aggctggctgggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtctggagatcgagaccatcctggctaa<br>catggagaaaccccatctctactaaaaatgaaaaaaagaaattagccgggcgtggtggtgggcgcctgtagtcccatctactcgggaggctgaggcagga<br>gaatggcttgaacctgagaggcggagcttgcagtgagccaagatcgcgccactgcactccagcctgggcaacagagcgagactcgtctc<font color="green"><u>AAAAAAAAAAC<br></u></font><font color="red">AGGAGGCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCT<br>AACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAAAC</u></font>cggaggctatttgtgtaaatgtaaatcgcatgtcacggtgagtaatcaagatagtgctgcccttgggggatgtga<br>ctaaaaggaagcacagagctgcccaattaagtattacatttcccagctttctttgcagctaggcgtggccacatgacaaggccacatgtggatgtggggc<br>agagtggacagggaggttgtgtttgcacaaaagcatctacctgtgatgtttaagttgagatggatgaaaagaaactggccatgtgcagatactggaagag<br>agaatcccacgcaatatgccattggaaaggaatcttagtttgagaaattcaagaggtgccagtggtgggggtggtgtgggcgtggcaggggatagactct<br>tggagaacaaaatg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	58	733	408	NA	intergenic
0	chr20	59407576	59407882	1000914	0	-	Yb8NBC516; RIP_Alu_chr20_059_02	GGGCTCAGGGATACTATGCTC	GCCTAGGCCTACCACTCAGA	SINE	Alu	Yb8	gagcccctgcagggcaggctctgagttcctcccctcaggatctcctgagcccagcatcacacatgtgagcaggaactaaaaaagaggcaggttgaaaaaa<br>cactgaaagggaactggagaggccaagtgcttcgtgggtgatggatgggcaggtggacgtgagtggccaatttgccaagtcctgcagcgaggcccggcac<br>acaccatagaccaaccggataggacctcatgatggaggtgaggctttggggagggcagagggggtgcaaaggctgagccaggcctggggtggtcatagag<br>ggagctgggagatgagccaggggctcagggatactatgctctctacctttgggtacgtttgaaattttccaataaaaaatcttttt<font color="green"><u>AAAAAGTGGGTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAGTGGGTTTT</u></font>tcctcctgaaacaattgttaaggttctgagtggtaggcctaggctttaaggacttagtataaataatgacctggggttc<br>actttacaaagcatttaacccacatccacatttaacccacatcagcatttaacctacatcagcatcacacctccatggccagaggctgcacaatctgaaa<br>atgtgagagcaacagggcctacaggactgggctgtggccggggtctgactgtgagagtcctgctctgggcacaccagtcacacctgctggcctgagaaag<br>gggacacacaatgactgacgcaaggccaatcttcctccaagacataattgtgtatgtgtcaaaattaacgaatttggctaggccacagtacccagaccta<br>ggtaccc	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	445	124	NA	intron:CDH4:NM:001794:2/16
0	chr20	26009339	26009645	1000915	0	+	Yb8NBC523; RIP_Alu_chr20_026_01	CGAATTGCCAGTGGTTAAAA	ACCTTCTGCACGTCTCCAAC	SINE	Alu	Yb8	gtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccggg<br>aggcggagcttgcagtgagccgagatcacgccactgccctccagcctgggcgacagagcaagactccgtctcaaaaaaaaaaaattattcacatctaatt<br>atctcaggagacatcaacacagcaatgttgaaaatttcccattaattgttaatccatggagaaaaactggacaattattttttaaaatatgaaaagcttc<br>atataatacaaattatactcccacatgtgattcaatttctattaatggcagagaagttaataattacgaattgccagtggttaaaa<font color="green"><u>AAAATAAATCATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCCTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGATTCCGTCTCAAAAAAAAAAAA<br>AATAAAT</font><font color="green"><u>AAAATAAATCATTC</u></font>atcgttggagacgtgcagaaggtttaaaagaggtaagaattagtttttgggtttggggcgttttacgctttccaaaagg<br>ttttgctctttttttttgctcatggctttctctctctctctctctttctttctgatttcagtttcttttgatttctcctgcttagaaatggtgagagaac<br>tttggatgtggaacgtggaggaggaggaacacgaagtggggatctccacttggggtggtcagcactgcgggtgcccagcaaagtcactgcctggtccaca<br>tcccggaggggtctctgcgcctcagtcggcatcgcagctgatggtgaaacttttggtgtggcagaagagtgtccacaaacttcggaaggtatccgctaca<br>tcctcca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:FAM182A:NR:026713:3/5
0	chr20	40377147	40377267	1000916	0	+	Yb8AC828; RIP_Alu_chr20_040_01	GACCACCTTGATGGAAAATACA	CATTGCCATTGGTCACATTAGA	SINE	Alu	Yb8	gaaaagatcttatgtaactgaaagactataaaccaagaaggtggttgcattggttttgtaggatgctaagagtgtgaatcaagaacaatggatagaaact<br>tcaataggaaatatttcagtaagtacattaaaaagcctccttagagacacagcccactccctactccagaaaacagtaaagctacctcagagataaatga<br>gttctctgtcattggaggtattcaagaataagcactaatgccagttaattggtgttgtagtatggatagaaccattgttttgtgtgtgtttgagattgtt<br>gaatgacctttgatatgctttccagccctgtgattttctaatattatgactggtgccaatccttgaccaaagaaatatttgacacaaaaa<font color="green"><u>TGGTTACCTT<br></u></font><font color="red">GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGGCTCCGTCTCAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TGGTTACCTT</u></font>gtttttgtttttggagaaacactattttctaatgtgaccaatggcaatgaaaaagggcgtattaatcac<br>taatcaactaaaccatgattagtgcattcctagatagcaaattgatagatattattattatatatgaagaacttaaggatcagagaggtcatgtaatttc<br>ctcaagtaaagcaccatctctttactttaatacaggagtgtgcaaaggttttatgtaaaaagccatataataaatatcttaggctttgtggagcatatag<br>tctctgttacaactgttcaactttactgttaagcatcaaaacagccatagacagtatgtaaatgaacaggcatagctgtactattatttttttaatttaa<br>aggcatgaggtaggatttgcc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	691	560	NA	intron:PTPRT:NM:007050:12/31
0	chr21	40508750	40509060	1000917	0	+	Yb8NBC106; RIP_Alu_chr21_040_01	TCACAGCACAATTCACAACTG	CTGGGTTGCATTTCATGGTA	SINE	Alu	Yb8	agctttgaaagaagctgtgagtagcagcctacaccgctgtctttgggaaacaccactgaacatgtaaggattcttatagactacaggtaaagggtggaaa<br>aagagatttccagcaaatggaagccaaaaacaaggagtagcgattctgatatcaaataaaacggacttcaaagcaacaacagcaaaaaaaaaaaaaaaaa<br>caaaacaaaaaacaacaagaaaaagacaaaggtcactatataatgataaaatgaccaattaaacaagaagatgtaacaattgtaaatatatatgcatcaa<br>actccagagttcctaagttcttgaagcaatcagtatatcaaaaagacacctgtacacatgtttatcacagcacaattcacaactgt<font color="green"><u>AAAGATATGGAATC<br></u></font><font color="red">CTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCT<br>ACTAAAAGTACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGG<br>AGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAGATATGGAATC</u></font>aacctgagtcctcatcaatccatgaatggataaagaaaatgtggttcatacacaacttacccatgtaaaaaacct<br>gtacgtgtaccctctgagcctaaaataacagttggaaaggaaaaaaatcataaaagcaagactcaactaaaaaaaaacaaaaagaaaaaattgtgatata<br>tataccatgaaatgcaacccagccataaaaaaaaatataatgacttttatagcaacttggatgaaactgggggccgttattctaagtgaagtaactcagg<br>aattaaaaaccaggtactcatgctctcacttataagtgggagctaagctataggtatgccaaggcattcagagtggtgtaatggacattggagactcaga<br>agtggggaggg	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	558	233	NA	intron:DSCAM:NM:001389:11/33
0	chr21	36786320	36786628	1000918	0	+	Yb8AC1817; RIP_Alu_chr21_036_01	AACTCACGTCCACCCAGAAC	CGTGGCTGTCTTCCTTCTTC	SINE	Alu	Yb8	gaaggtcatgtgtgaggctgtacagctttcccagtaaatatggtgcatgttgggaggacaggtgcatgtggacaggccgcctctcttcccaagcacccgc<br>tctgggctggggtctcaccactggagtaagaacagtatcatgatgcattaagtgaggagtccttgacgtgggttgaatagtgtccctgcaaaactcacgt<br>ccacccagaacctcagactatgaccttctttggaaatagagtctttatgggtgtgattaagttagtatgtggctgactgcggtggctcacgcctgtaatc<br>ccagcactttgggagcttgaggtgggaggattgcttgaggttggtagttcgagaccagcctgggcaacatggcgaaactctgtctct<font color="green"><u>AAAAAAAATGCAA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGAAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCCCAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAAAAATGCAA</u></font>aaattagctgcagggcatggtggcgagcacctgtaatcccagctacttgggaggctgaggtgggaggatctcttgagc<br>ccgggaggtggaggttgcagtgagcagtgattgtgccactgcactgcagcctaggtgacagagcaagaccctgtctcaaacaaaacaaaacgaaaaaaag<br>gtaaagatgaagttatactggcttccaatggctgctgtccttacaaaaaaaggataggcatggaagaaggaagacagccacgtgacgacagaggcagagg<br>tggggatgatgcgactacaagccagggaaggccaaggagacctggagccaccaggacctgggaccagcaaggaaggggcctcccctagagccttcagagg<br>gtcgtggcc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	791	469	NA	intron:CLDN14:NM:001146078:2/3
0	chr22	41879290	41879599	1000919	0	-	Yb8AC1821; RIP_Alu_chr22_041_01	CAAGCATTGTTTGCACCATC	AAACTGAGGCTTGCCAAAGA	SINE	Alu	Yb8	atccagggggaattggttctgttaagaaagactacttccctttccttcgaggttcgggggttaaacttttttttagtaaaaaataaagaaacagcctggc<br>cgacatggtgaaacccatctctactaaaaatataaaaattagccaggctgaggcaggagaatcacttcaactctggaggcggaggttgcagtgagcccag<br>ctggagccactgcactccagcctgggcaatggagcgagacaccgtctcaaaaaatatatatataaataaaaataagaaattaagaatgacttccctagtg<br>gtctagtggttaaaaaaaaaaataaaaaagactaccgttttaaacagagagcacatccaagcattgtttgcaccatcaaaagt<font color="green"><u>AAAGAAAACACAAATAA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAGAAAACACAAATAA</u></font>gccaggaacagtggctcatgcctgtaatcccagcactttgggaggctgaggtgggaggatcgcttgagcccag<br>gagttctgcaggagactgcagtgagctatgattgcatcactgcactccagcctgcataccagagtgagaccctgtctcaaacaaacaaacaaaaacaaga<br>aaggaaggaaggaaggggaagaaagaaaaaaagagaaagagaaaggaaagaaggaaggaaggaaagaaagaaagaaagagaaagaagaaagagaaagaag<br>gggtgggaaggggaggggagggagggaggaaggaaggacggaagaaaggaagaaagcaagctaaagtgaaaagtaggctccctccctgcgagcccaagcc<br>cctcacccca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	998	671	NA	intron:TSPO:NM:000714:1/4
0	chr1	62924417	62924746	1000920	0	-	pAlu1-62509441; Yb8AC1015; RIP_Alu_chr1_062_01	CCAGGGAGTTATGATGACAGG	TCAGCATGATGTTTTCAGAGAT	SINE	Alu	Yb8	tttttctttctttccagcgttctagcactttttttttcctgaaggggcaaaatagcaagtgtttaagagcatgggctctactctcagaccccgacatggg<br>ttcaaatcctgattggtattttctagcttgggactttggccaagttgttgggccaaatttccgtttcctcgtctggcaaatgagaataataataggaccc<br>agctcatagtgttgttgtgaacattaagtggcataatttgtgtaatgtgcgtaggatagtacagggcctatactacctgtcatcaaacacttgtagtaat<br>tagtttctcccagggagttatgatgacaggaaattttttttttttgtaaaataattaggtcttacttctgatgatgatgtcattaaaaaat<font color="green"><u>GTTATTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GTTATTACT</u></font>tgacatgtattcctagttttaatttctcttattagaaccagaagtttatctctgaaaacat<br>catgctgataaagtaagtgcactttagagagttggatatgaaattgtatgtctattagtggagttcgccaccagatgggataggacaaaccacaagagaa<br>aaagagaatcagttgtgcaaaacaacacaaaatgcaaataagaacagctttctaagaagttataaaattaagataatgtgaatgaagaaatgtgcactta<br>ttggacagacaggaggtggatatggtagtgattggtgattggacatgcaaggtgaggcggactgaggagtctgggatgacatcctaagttgggcaaccac<br>gtggatgatggtggcagtctttggggtaag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	499	165	NA	intron:DOCK7:NM:033407:1/49
0	chr2	8534263	8534552	1000921	0	+	Yb8AC1121; pAlu2-8621625; RIP_Alu_chr2_008_01	AACAGCAGGAATGAGGTGATATG	TCATAGGGCACTAAGGAAGTGAG	SINE	Alu	Yb8	ggaaaaaaaaataactatgagaagcaagactcgaaatctaccacaagaaaacaccaacaacaaacggaattaataactctgaacaccaaagaatgtacct<br>gctctttcattcaaccagcttttattaaactattacctaccagacactgtgggagttactgggatgttggggtgtataattctggatctgtgccctggag<br>gagcttgtatgggaaagacagacactaaacaaacagttgcgacaccgtggactagccctgtgccaacagcaggaatgaggtgatatgggagccaattcac<br>ccacttggaggctcaagaacagggggattttgccagatgcagcagggtgatgataggattagacaggatgataatggaagtcc<font color="green"><u>AGAAATGTGAGTTACAG<br></u></font><font color="red">CCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAA<br>AATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTG<br>CAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATGTGA<br>GTTACAG</u></font>ccacaccttaaggcacacctctcacttccttagtgccctatgagaatgcctggcccctacggctgcagagcagtacaaaggttaacgagatgt<br>gggaaaccactcagaatttttatgctaaagtcattacatttgagagcgatttcatattggctggactttggtctcagtcaatatgatttcatctggcacc<br>atttatgttaccaacttaaactggctgctatttccccaaaaaagtatttccctaaaaatcttcacatatatgtctgccttttcatcaattaaggagtatt<br>tactgcacacctccatgtgttcatatcctatttgacatctataaatgaatcttaaaaagtgcaactaagcaagcgtgtatcagtggcatc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	486	179	NA	intergenic
0	chr3	6654969	6654970	1000922	0	-	Yb8NBC406; RIP_Alu_chr3_006_01	CCTTGGGCAAAGCTGTTTTA	TCCTCCCTCAAACATCAGAAA	SINE	Alu	Yb8	gtgcatgcatgaatttatttctgaattctatatcctgttccacgggtccgggtgtctgtttttgtgccacgtaacatgctgtcctgtttactttgtggaa<br>tattttgatgtccagtactgtaatgcctgcagctttggtcattctgcgcaagcctgctttgcctatccagggtcttttgcgtcttcaaataagtaccaag<br>gtcctagaaattttgtaatccacattctcattttctcccttctttccttcggcccttcttctgttttcttccccatttcctccctcaaacatcagaaaaa<br>tgtactggaggatgtttggttagaaaaaaaaaaaaaacaaaatggtgaaagtagttttctgtaaatgaattggttattgttgtttcacctt<font color="green"><u>AAAAATGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGTA</u></font>aaaagtgagaattaaagatgtaaaacagctttgcccaaggaatacagaactactaagcctgggtggtgccatgcc<br>gtgtttcttcctgcctacccactgaatttaatcctccaattcctcaattgtaaaaggatgatctttctgatctcttcaaacgctgatataaccaagtcca<br>gtctgataggtttgtatgattttcatattctcaccacgaaaaagtgtgtcaagtaagttaataaggtaattgaattatgttaatagaactatcaggtctt<br>taatgtgtatgtatgtgaaaacaagtttgaattgaaatgaattcttttaaataaatgagcagatataaaaatacttccttcagtcatttatttattcact<br>tgccatgtatttattg	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	488	153	NA	intergenic
0	chr3	69928337	69928612	1000923	0	-	Yb8AC1171; RIP_Alu_chr3_069_01	CACAAACATGGTCTTGGTGC	TGCTTGAATGCACAGCAGTT	SINE	Alu	Yb8	ttccattcacatgtggcattaaattggcttgaagggagcgaattagaggtataccctctggactaaattatgatacaaatccctgcatactcccattaaa<br>aataatttataaacttagaatagtagatgttctccttgctaatgtatttagcttatgttagagtcagaaaacctgcaataaaagtctcctataaaatggg<br>tacagtttctgcaacctttatcacacaaacatggtcttggtgcttctgctttaaccacttaacccctacacatcacttgttggtggcatttgctcaagta<br>ttttgaaatgtttagtttgttgtcaaggcaatagatatggcctaacaaatcactctgtcccaggttatgtttcatgactatctt<font color="green"><u>AGAAAGACGGTGTTTG<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACCAAAAATACAAAAAATT<br>AGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGCAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGA<br>TTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGACGGTGTTTG</u></font>taagcttc<br>acaaactgctgtgcattcaagcagctttaaatgttttactacctgcaaaagtatttaggaaattcctcataggcactaaaagaaaaaaaaatcctttcag<br>attagattcccttttctaaataagaaagaatgctttgccatatttctaaaatgaatacaaactaaacacaatcttcaaaaatagcaacagaggccaggcg<br>cagtggctcatgcctgtaatcccagcactttaggaggccgaggcaggcagatcacctgaggtcaggaattcaagaccagcctggccaacatgaagaaacc<br>ctgtctttactaaaaatacaaaaattagctggtgtggtggcacatgcctgtaatccctactactcgggagtctgag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	208	NA	intron:MITF:NM:006722:1/10
0	chr4	190861631	190861926	1000924	0	+	Yb8NBC402; RIP_Alu_chr4_190_04	CATTTCCCACATCACATACCA	GGTCATCCTCACTTCCAGGT	SINE	Alu	Yb8	ttcaagaaaatctcctaaatgttgataaaacagtggaagtctgtgccctctgagccagagctagttcctattccctcctccagctccatgtcacaggaga<br>tctccacatcacatgatcacacgtcacatgaccaggaacatgggaactccttttcagccccactcccagtcaaagacgtatgattacaccccaggtgatc<br>tcatccccagacaccacccctctaagtaaaggaaattaggatgccatctcacatcaaggggacagatgagatgtttcaacaatgttgatgtttggacaac<br>taggaagatatatgaaaaaataaagttagattcatttcccacatcacataccaaaataaattccaaataagacaaaaactttaatgtgaat<font color="green"><u>AAAAATAAA<br></u></font><font color="red">ACTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAC<br>AAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAA</font><font color="green"><u>AAAA<br>ATAAA</u></font>taaataaataaaataaaataaaataaaataaaataaaataaaaccatacaaaaacataaaataacattaaagaatttctttaaaacctggaagtg<br>aggatgacctttttatttctgaaaatccagaatccataaagtattaacattttatcacatacaaattaaaaatttctacatggcaaaaaataaggtattt<br>ggatctaaagacatataacaaattggagggcagacatttgtaatcatatcacagataacgggtgaatctctctgtataggaacttttagaaatgaagaag<br>gaaaagataaacaacagaaaaggattcaaagattaatagttctcagaaaaattcaaataattttttgatagatgtcaacctcagttataaaacgag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	477	172	NA	intergenic
0	chr5	157385611	157385612	1000925	0	-	Yb8NBC294; RIP_Alu_chr5_157_01	CCGAGATTTTTCCCACCATA	CCAAAGAAGGGCTTGAATGA	SINE	Alu	Yb8	agtagcactgggcctatgcccagatctgttgctttaggacaataaatcatttctattttcaccccctccccacctccatccccatttatagaaaacagcc<br>ttgtgacctgactggtaactttagggccagccattggcaaaactgggaggcccaagataaggagccttcctctacctgtgaacagacccctcttcctgcc<br>cagaataaggcacacacatctttatactgccctgagccttctgccgtaattacccaacccatctcactctccaggacagcacccaaagtaccgagatttt<br>tcccaccataatgcccctatcttgagtgttatttttcaacaaggctctgtttcctgctaaagagtaaatggttaatctaattttaa<font color="green"><u>AAATAAATAAATAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>TAAATAAATAAAT</font><font color="green"><u>AAATAAATAAATAC</u></font>cagcactcaagtgtcaataaaatgccaactataatgacgtgagaggaagacttattttctactgttttattta<br>aaaaaaaaaaaaaaaaaccctccaaaccctctcttcattcaagcccttctttggttgaattagggtgggtagctgagactctcttgttcacctctccacc<br>ctcaatgcctagaacagaccctggcacacagtaggctcccaggactatctgtgaatgagtaagagcccaccccactttccatttcctcccccacctgaca<br>gatcctgagcgggaccttgaaagaagagcttgcagccaatgaagttgattcatcaacagattcatcaattgatgaaatagattaccctagaatcttgatg<br>ccaaagtccactt	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	564	237	NA	intergenic
0	chr5	29475156	29475438	1000926	0	-	Yb8NBC509; RIP_Alu_chr5_029_01	CCTCCTGAAGGTCCCACATA	GAACCTGGGGCAGAATGTTC	SINE	Alu	Yb8	gtgtttagtaaacaaaatatagttcaatgtgactgaagcatactaagaggcagaagaatgtggtgtacactgtagtgtagaggagtgtcttagtttgggc<br>tgctatacaaaataccatagattgagtggcttatagatgacaaaaaaaagtatttcttactgttctaggggttggaagtccaaagtcagagtgccaggat<br>gttctggttttggggagggcccttttgcaggttgcagactgttaggtttttgtataagcacatggggaaagaagtgagagctctcttaggtcccttttgt<br>aagaacactaagcctattcatgaggcctctactatcacaacctaattacctcctgaaggtcccacatactaataccattacactgacagtt<font color="green"><u>AAGATTTAA<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGCGGTGGCGGGCGCCTGTAGTTCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCGGTGAGCCGAGATTGC<br>GCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATTTAA</u></font>atatagaa<br>attttgagggtacactttaaaaattcagtccataacattctgccccaggttccccaaaattcatgtcttcacatgcaaaatgcagtcattccattccaac<br>aaatccataagtcttaactcattccagcctcaagtccagtctaaagtccaaggtcttatttaagtattaactaaatcagatgtaggtgagattcaaggta<br>cagttcattctcacaaaatttctcttcatctgtgaacctgtggaatcaaacaatatgaacattcaaaatacaatggtgagacaggcataggataaacatt<br>cccattccaaaaggaaccgctattcaaaaaaaataaaataaatgaatgctgtgtcccaagtaaatctaaaacctaacagggca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	404	112	NA	intergenic
0	chr5	29494737	29495052	1000927	0	-	Yb8NBC510; RIP_Alu_chr5_029_02	GAAAGGCAACAGGAAGTCTG	TACTGCCTTTGCTTTGTTTGC	SINE	Alu	Yb8	gaataataatgcaccataaacacattggacttagttcataaagggaagagccctttgaaattcagaacattatcaatgtaattgtatgatgatgatttag<br>tcaggaaaaaaaatatatgtgatcagaaaattaaaaaccaataaaagcattatatacatttatttctcatttctattaaaaaattcacatttacagaaga<br>gaatttcaatatcctggaaataatatttgtaaaatccagcttaaaaaaattatactaacataaaaaaatttaaaaagcagctttttctctgaacaaagaa<br>aggcaacaggaagtctgtttctattatctctactagacttaattttagaacttatggacagtagaataaggcaaaaattgaatgtaaaaaat<font color="green"><u>AAAAATAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGTTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAATTAAAAAA</font><font color="green"><u>AAAAATAT</u></font>tatttattcatataatttataataaaatttatgtaatctatatatcattttaattacaaaatatgcttatcaaata<br>tttccatataagtctgaggtgcaaaaaatcaattgaatgtgtatataccataaacaattagagaaaaatggtattagcagtacattgaggaaaactaagc<br>atatgaatattagatgtaaacatattctgcactaaagactataaagcttattgctatacatttgaaaagatctaaataaatcaaggacagtattatgtcc<br>ctgaaatcaatgattcaatattgttaagtattaaatgtgctaagattgttctaaacattcagtacaatcagaaataaaatgactgttgggttatttttgt<br>ggatattgtaaaatat	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	857	533	NA	intergenic
0	chr5	69349593	69349594	1000928	0	+	Yb8NBC543; pAlu5-69091653; RIP_Alu_chr5_069_01	TCCCTGCTTTCGGAATTATG	GGCTGTGAAACTTGAGGGTCT	SINE	Alu	Yb8	tcaatgcctgttacacatatcattttgttattttgcggcttttctggtttttttcattatccttcatctgtctattttcagttgcaaaggaaatgtttgt<br>gttgtatatgtgttgtgtacatgcatgttttgagattgagagaaaaagagacagacagacacacagggacagaaagagagaaaacaggagctcatactga<br>ttttgtattcattagaaggcaagccccatgaaggtggtagacgtcctgctttcctcgctgctgttatttttgtattatcttgatgcttttggcactcacc<br>atatatttgttggctgtgtcgtgaaatgacattccctgctttcggaattatgaggaggagatgagttacttataaaagcactt<font color="green"><u>AGAATTCTGCTCACATG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AGAATTCTGCTCACATG</u></font>aactatacaatttttttttttttttttttttttttagatggagtctcgctctgtcacccaggctgaagtgcagtggcat<br>gatcttggctcactgtaacctccacctcctgggttcaagcaaatctcctgcctcagcctccagagtagctgggattacaggcgtccaccaccacgcctgg<br>ctaatttttgtatttcagtagagatggagtttcaccttgttggccaggctggtctccaactcctgacctcaagtgatccgcccacctctgcctcccaaag<br>tgctgggattacaggcgtgagccactgcacccaacctacaagctccttaaattgtatttttattatgaagaccctcaagtttcacagccacttgaggttt<br>gatc	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	757	436	NA	intergenic
0	chr6	135834562	135834878	1000929	0	+	Yb8NBC292; RIP_Alu_chr6_135_01	TCCTTTGTGGAATTCAGCAGT	AGGGAAGGCATTGACTGTGT	SINE	Alu	Yb8	aatgaatgaagtttccagagtatcttcagtagcatctctacctttcatagcattacactgacattttcattactttttaaatagcctgattttgtggttt<br>tgatttcctttttccctctaacagctttatgggataaattcccaagtagtttgtaaattataaacttttgttaacttctagttgtactgtactatttttt<br>ttaaaaaagtctcctttgtggaattcagcagtttcatggatcaaattatgtttgaattttgaaacgtcccaaatacatttgttcattcatgttcctatta<br>tacctttgccaattttttacctctttaaatgattcaggtttttttttgctttggtttatctgctattaaaatcagctttatt<font color="green"><u>AAGATATAGCTTACATCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCACCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATATAGCTTACATCA</u></font>ataaaatttgccaattttaattgtataattaaatgaattttggcaaatgtatgcagtcatgtgac<br>caccaccataatcatgacattgaacatttccatcattctacatgtcctgttacacagtcaatgccttccctccatgctctgaccctactcaaccactgat<br>ctggtatcacaatagctttgccttgtctagactttcacataaatgaaattataccatctatagccttttgtgtctggtttccttcattcagcacaaagct<br>tttaggattcatccatgttgctttattcatagcagtttattccttttttgtggagtagtattccattgtacagttatatgccacattttgtttctccata<br>caccaattaatagatgt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	660	325	NA	intron:AHI1:NM:017651:4/28
0	chr6	51913998	51914311	1000930	0	-	Yb8NBC447; RIP_Alu_chr6_051_03	GCAGACGCTCTGGGTAACTC	AGGACAGGTAAAATGGTGGAA	SINE	Alu	Yb8	tgagaattacgccatgataggtaacagatgaggaagaaatttgggcttgactgaagtaatgggggctgtctgtgaaggcttgcggcagtacagcccaggt<br>aatttgctgagcctgatgggtgtcagggtcagtccaagtgaaagcgaagagaggctgggatgaagggtgcaaaggaatagtaaagaaagcatgtttgaga<br>tccagaacagaataatgggttgtggagggaggtattgaggataggagagtatatgggtttggcaccacggggtggataggcaaaacaatttggttgataa<br>ggcacagatcctgaactaacctgtaagccttgtctggttttaggacaggtaaaatggtggaattgtaaagagagtttataggcttt<font color="green"><u>AAAAGGCCATGCTG<br></u></font><font color="red">GGCTGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAAGGCCATGCTG</u></font>taacaggtgagtgataacaggctttaatccttttaaagcgtgctgtgggatgggatattggcattgagtggg<br>gtaagggtgattaggttttaatgggatggtaaagggtgcatgatcagtcgccaaggagggagtagaggtgtcttatatttgtgggttaaggtgggggggg<br>atacaagaggaggatgcgaaggaggctttgaactggggtaaagggcagcagtgaggtgtggctgtaatctaggaacagtgagggaagcagataattcaat<br>taaaatgtctcggcctaataagggaactgggcaggtggggataactaaaaaggagtgcataaaagaatgttgtctaagatggcaccagagttggggagtt<br>ttaagaggtttaga	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	918	590	NA	intron:PKHD1:NM:170724:36/61
0	chr6	46075435	46075744	1000931	0	-	Yb8NBC474; pAlu6-45968765; RIP_Alu_chr6_046_01	GCAAAACACAAGTTTGAACTGC	CTGATGGGAAGCCTTACTGA	SINE	Alu	Yb8	gggttcagatgaacaggtggtaacaactaaaaatggtgaccctgaagtcacaaatcagatggatactcccctcacggtgggtgtctccttcaaaggagca<br>tgtgcaccatcatcttattattacacagacatacacagtatgtgtgtgttttacatatatacagttaacctccaaacaacgtggaggttaggggcactga<br>cccctccatacaagttgaaaatccatgtgtaacttttgacttcctaaaatcttaactactaatagcctactactgatgggaagccttactgataacataa<br>cagtcaacacacattttgtaggctatatgcattatatatggtattattacaatacagtaaggagataacagaaaatgttattt<font color="green"><u>AAAAAACCACAAGGAAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCTGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAAACCACAAGGAAG</u></font>agaaaatagatttactattcattaagtgggagtgggtcatcataagtcttcatcctcctcatcttcacattga<br>gtaggctgaggaggaagaggaggaggaagaggaggggttggccttattctctcgggagtgacagaggtggaagacccacttatacttatccatgtataag<br>tggatctgtgcagttcaaacttgtgttttgcaagggtcaactgtatacacacacataatatacaggatacacatataaattttatgtgtatatataatat<br>gtatacatacacttttctcctgagatttgaggtccaaaactgaaatacccacatccacatagtatttggcacacaccatatacccagcaaatgatattcc<br>tgtgtaaatc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	659	332	NA	intron:CLIC5:NM:016929:1/6
0	chr8	123304442	123304443	1000932	0	-	Yb8NBC639; RIP_Alu_chr8_123_01	GTATGGAGGGGGCTTCTTTC	AAGTGGCACAGCCTTATTGC	SINE	Alu	Yb8	ttttccgtgtgttctgactgctccactcactggccattcacccttctctcttctctctttgggcctccctatttcctgagacacacagctatattgaaat<br>tatgccaaattaacaaccttacaattaataacctctaagtgttcaagcaaagaaaagagtcatgggtctctctagatcaaaacctagaaataattaagct<br>tagtgagggcatattgaaagcccaaatcagccaaaaactaggtctcttgcaccaaatatttaaattgaaaatacagaggaaaagttcctgaagaacattt<br>aaagtgctactcccattaacatatgaatgataagaaagtggcacagccttattgctgatatgcacaaagtttgtgtggtctggat<font color="green"><u>AGAAGATCAAACCAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCGCTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAGATCAAACCAG</u></font>ccacaacatccctcgagctaaagcctaatccagagcaaggccctaactctctttaattctgtga<br>aggctgagagaggtgaagaagctgcagaaaaaaagtttgtaagctagcagaggttgatttatgaggtttaaggaaagaagccccctccatacatgaaagt<br>gcaagtgaagtagcaaatgctgatgaagaagctgcagcaagttatccacatgatccaggtaagatagctgatgaacatgtctacattaagcaacagattt<br>tcaatgtagatgaaacagccttctattaaaaaaagatgccatctagcactttcagagctagagtgaagttgatgcctggcttttaagtttcaaaggacag<br>gctgaacctcttattaggtgc	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	557	221	NA	intergenic
0	chr8	140662516	140662517	1000933	0	-	Yb8AC742; RIP_Alu_chr8_140_02	GCCTTCAGTATCAATCATAGAGGTG	GGTTTCACTGGGATAACTTCCTT	SINE	Alu	Yb8	ttctaatttaatttcccatttgagaaagaattcttttatggaacaatcaggcttgaatgattccacgggcttagaaaacaagagattaaaagcttttagg<br>ctcagtataaaagaaggaaaaaaacaagaatgtttgtcttaagactccgttgaggctattgccttagtggaaaacgagagttggctagtctggttctcct<br>taagtcttgtaataaagtgactatgaaaatatcaaatgtcacaagtttaaacaagttagaaagtgataatatataatatcatgtaagtggaaaatttaag<br>gtttcactgggataacttccttatcagagtttgctaactggattagggtaaacatttgtttttgtagtcaagtgctagcaagcttt<font color="green"><u>AAAAATTTAACCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTTAACCAT</u></font>tattacatgtttcacctctatgattgatactgaaggcttttttttccttctgaagtttctcttc<br>tcatggtatttgctattttaaccctgtttcaagcaaataaaatttaaacaattaagaatttcaggcatattctattataaactatttaaaagtttaaacg<br>catgtactaaacatgaaataacttcctctggctgtgtatttaagaatatttgtgaatttcttttcagtagaagctcaagtttataggcgtcattacttgg<br>ctagttattcgggttaaacataatatgcctttcctgtgatattatgttagtagtacaagtgctgttgtattataacatttgacttttggggatcataata<br>cagtaaatagtaaatggacata	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	638	302	NA	intergenic
0	chr9	190132	190443	1000934	0	+	Yb8NBC434; RIP_Alu_chr9_000_01	GAATCCTCTTTGCCCTATCAAA	AGGCACTGTGCTAGGCTGTAG	SINE	Alu	Yb8	cagggtttgaatccaagtcagccttactcccaaccactttccacttcattatgttgtcttattgctgacttcctgccaggacttcccaagtgttcatttt<br>cacgtctgcagctcatttaattacttttagttcctttttccttttccaatccagtcatctatactatttaccctatgtcagtgaatgacatccagttggt<br>tcagtatttcaaaatttctggcccaccttctcttctcatctgtatctggttacctttttatccaccttatatatcatttcctaggaaagattccatgacc<br>tcccaaggattgactttgtacttttcatgtgcttttacagcacaaacagaatcctctttgccctatcaaagtagtaattaccaggtat<font color="green"><u>AGAAATTATCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AGAAATTATCTG</u></font>tttgcttatttactccccaactacactaggctcctaaggactgtggcaatattcatcttatttatgagtcatatct<br>acagcctagcacagtgcctggcacatagcaggtgctcactacatattttgttgaatgaatgcataaatgaatgaggttacacacatacctctatgacata<br>gtttggatattagttccctccaaatatcatgttgaaatttcatccctaatgtgggaggtgaggcctagttggaggtgtttgggtcaggggggcagatccc<br>tcatgagttgcttggtgtcattaggttaggattgagtgaattcgcgctcttagttcctgtgggatctggctgcctaaaagagcatggcactcctcccctc<br>tctcttgctccc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	57	471	147	NA	intergenic
0	chr11	31109024	31109323	1000935	0	+	Yb8NBC296; RIP_Alu_chr11_031_01	CGAGAGAAACTTGTCACTGGA	GCAGAGACAATACAGGGAGGT	SINE	Alu	Yb8	ctcagactgagaaagacatactggtgagagccacaaacaaccagtagccaacatgtaaagtgagcaaaaaatgaatacttgttttaagtcactcagctat<br>tgggctccttgacttatacagcacaatctaccaaaagctgataaacacattgcattctactaaatccctacaatcctatataacttatatagtaggttac<br>taagagtcagcctttaactgtaaattcaaatgagagtctagaaatttctatcatctattcataaggaagaccctcatgccagtgaaatttggacaaaact<br>ttggatatcatgggaatggaaggcagagacaatacagggaggtcaggaggaatcctaagggaaacagaaaaaagaaaatgagat<font color="green"><u>AAAGAAAACAAAATTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br></font><font color="green"><u>AAAGAAAACAAAATTA</u></font>atgaaaagaaaaagaaaagaaaaggaaggaagaaattaaagggagaaggtgattgggggaaatgagaagggaagaaagagaaag<br>aagatgtgaaaaagaaaagaatggtgtttataggctataaaatccagtgacaagtttctctcgttatcctccttttcttactttttggaatgaatttcca<br>tgctttccatagtactgttaattctacaagaaagttgtaatatttaaaatatggaaataataaatgatccagtattagtctatgctttcagcctcatttt<br>caccaccagatcatactaccctccagcagtattatccttaaaaaacaatggataatagtgtataacatccttgaagctaaagaccaatacaggacaggtg<br>	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	541	225	NA	intergenic
0	chr13	22455674	22455984	1000936	0	-	Yb8NBC592; RIP_Alu_chr13_022_03	GCCATGGGGTAGGTTAGTGA	GAAATTGCTGACGCACACAC	SINE	Alu	Yb8	gcagatgttcatagctctgggaatggaatgcgacccttgtggagagcctataaacggacgcatggggggtgcttgcccatacagataagttagggctata<br>aatgccctcatcttgccacggctcttctaggtctctttagggttaaggcatactcccttctgagaatttctggtctaacaggctgtctagcctcacatcc<br>tgtttctatggattgtgtgtaaccagcttttgctgcaactgttactgctgattaatatcttgctaatcatagtttatggataggctgtgtttatgtttta<br>aggctctgttagaaattgctgacgcacacactatattgtaaattcttatcactgtatactgtacttctgcataccgatgttatgtt<font color="green"><u>AAAGAATTACTTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGTTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGAGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAGAATTACTTCA</u></font>tccccatgtgatcatttcatctcataatcaaatgaccctaaatccctcactaacctaccccatggcgacaactgg<br>tcctgggttccctgctgctggtgggggagggcaggatcaggggttgccactgatactgactactgccatttccaggtggcagctgtggctgagcccacgg<br>cagtggctggcagggttacttccagagggccggagggtcgccaagtgtaccgctctcccatgctagggtccaatttctcttggccctggcccagagcaca<br>ggtttgcaggggcactgtgcagccgcagggttgtgactgctcgcctcctgccctcccgcacctgcgggctgaccgtggcagtgtctggtcctgggttcca<br>tgctatggggg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	480	155	NA	intergenic
0	chr13	18076189	18076464	1000937	0	+	Yb8AC1667; RIP_Alu_chr13_018_01	TGTGGGACACCAACAAAAGA	GGGCACTTTGACCATCCTAA	SINE	Alu	Yb8	tgtcagcaactgaacttaaagacatacagatgaacgatctggcaggcaaagaattcaaaatggctgttttaagaagagcctgaacactgagaaagcagag<br>acacaattcagaaatgtaccagagaaattcaacaaagaaatcaaaataatgggaaaaatcacatgtaaatcctggagcagcaaagttcaatggacacttt<br>gaaaatccaatggaaggcatcaacagaagaactgatcaagcagaagaaagaaacagtgagctcaaagacaggctctttgaaaatacatggtcagagtaga<br>atgaaaagaaacaaagaaagtttatgagatttgtgggacaccaacaaaagagcaaatctacatatcattggtgttaaaggggaact<font color="green"><u>AAGAATGCAAAAGA<br></u></font><font color="red">GCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAG<br>ATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGCAAAAGA</u></font>gatagtttat<br>tcaaagaaataacagaaaactttttaaatctggagaaagattaaaatgtttaggatggtcaaagtgcccaatcatatttaatctgaataagacaaccaaa<br>gacatattataattaaactctcaaaggtcaaagacaaagagaagaccctgaaaggactaagaaaaaggaaacaacacataagagaattccaatatgcctg<br>gcagcagacttgtcagcagaaacactacaggccaggagagagtaggataatagattcaagtgctgaattaaaaaaactgtcaaccatgaataaactatcc<br>agcatagctatcatttagaaataaaggagagattgaaacattctcagacaaacaaaaagcaaaggaattcactgta	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	438	148	NA	intergenic
0	chr14	100235667	100235976	1000938	0	+	Yb8NBC291; RIP_Alu_chr14_100_01	AGAAGCAGAGAGTGGGCTTG	TGGCCATACCATTGAGGTTT	SINE	Alu	Yb8	tctggttggccgttagtcagaagtgggacaaaaataggaagctgtcagttaggagtcaagtcctggccatttggggccaattgtcacagaagccacggtt<br>tagcttcctgcattgtcactagagatggctatcgggcctcctgcaagcctggctcactgcaggctggcttcctccactgtttatgggggatgtggggtca<br>gtttcctggcaggttgttgcaggtgtgggtcagcgttctgttttcagaacagacccctgtgggaggggcactgagcttcctggtggccagtgggaagagg<br>gggtcatggcagagtgagatagaagcagagagtgggcttggggtctgtctgggagcaggcaagagcactgttgggtaagaactactt<font color="green"><u>GAAAAGGGACAGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGAGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTACCAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>GAAAAGGGACAGC</u></font>aaacctcaatggtatggccactgtccctttggatatttagtcccttgcaggtgtcctttgacacacagagacgagac<br>gcaggttgtgtggagacagaggcaggggttggaaggaggctgccacaagccaacgaatacctggaggaccagaagctgcaagaggcctgagaggaccctc<br>ccctagagcctctggagagagcacggccctgcccacacctgagctgtggacttgtggcctccggaacaatgaaagaataaatttctgttgtttttagcca<br>ccaagatgtggaaatttgtaatggcagctgacagaagtttgcccaaggtgacaccattggtggatggaaggactaggattggagcccaggcaaggttctg<br>gtagggagtg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	423	100	NA	intergenic
0	chr14	56100981	56101319	1000939	0	+	pAlu14-55021168; Yb8NBC467; RIP_Alu_chr14_056_01	TATTTTCCCTCCTCGGTGCT	GATTCCACGGGGAAACGA	SINE	Alu	Yb8	tcttgtcaatagattccacggggaaacgaaaatggagtgaagaaaaagtgctaaggggccggagctggtggctcacgcctgtaatcccagcattttagga<br>ggctgaggagggtggatcacctgaggtcaggagttcgagacccccctggccaacatggtgaaaccctgcccctactaaaaatacaaaatttagccaggca<br>tggtagtgggcacctgtaatctcagctactcgggaggctaaggcaggagaatcacttgaacccaggaggcagaggttgcagtaagccaagatggtaccac<br>tgccctccagtctgggtgacagaagaagactgtctcaaaaaaaaaaaaaaaaaaaaaaaggaaagaaaaaaaaaagaaaagaaaag<font color="green"><u>AAAAGAAAAGAGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGG<br>AGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAAAAGAGAA</u></font>aagcaccgaggagggaaaataatgaatctaaaattctatacccagct<br>aaatcattcaaaatcaaaaatcaagataaagaagaaacaagttcagatatacagagattcagaaactactaaaagatatctttcagaaaaaaaggaaaat<br>gagctcataaggaagtggcagatataaaaaaaagttagtaaatcagaaaattgcctggaaaagcaagcatctgtatttaaatatgaatattatactgtgt<br>ttaattttgttttccttcatttccattagcactaccctggatgggaccaaagtcagctctcacctagattactgggatggttatttctaatcactttccc<br>cacctctattgttacccacctcttcttctccactctata	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	765	411	NA	intergenic
0	chr14	77897999	77898337	1000940	0	+	pAlu14-76818186; Yb8AC840; RIP_Alu_chr14_077_01	GGCTCCCTTTATTTGTCAAGCTA	CTGAAAGAAGTTATGAGCAAGCAG	SINE	Alu	Yb8	tctctcctgtagttaatttctctagatctcttgtgctatattgattttgtaaatagctattgtcacatctgccccttctgcctgtgggaactagtgggtc<br>ttaaaaaattgaattgggtgagagtgtagattaatcaataccaagatttattgactcgggacatttatattaactgttgtgaagtcaagaataatttgaa<br>ccttttcaatacttcattaagtggcatagtgtattatctatggtgtattttgaaagtatccttcctggatttggtacagctctcacctcgacttcctaaa<br>acggctccctttatttgtcaagctattaggatttatattataataggaatcacatcaaggtacttttcaaaggctaagtaaaaatcat<font color="green"><u>AAGAAGAAACTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGAAACTA</u></font>tagtttctgcttgctcataacttctttcagattcctccttttgaaacac<br>atttttttttttcaactggggttaggttttcagtgagatcaaattcaggcatgggaactagagatacgcatatcttaaaattttgttctttgtggaatat<br>ttgcctattgcactttaaaaagtcaacaactactttgtttaattaaataattaatgcctctcctttttacaagaaggagttacatcatctttttccaaag<br>ggcataaattagaacacttcagacacaacctgttcttaacagggatgtttttcatatctattaagaaggaaataattttgagttgtatagtcatggtgag<br>aaagatatatcaataattattaacttatcctatctcttt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	479	128	NA	intergenic
0	chr16	29472851	29473149	1000941	0	+	Yb8NBC430; RIP_Alu_chr16_029_01	TGGATCTTCCATTGTCCACTT	TCAGAAACCTTCGCTCACG	SINE	Alu	Yb8	atgacacttgaaacaagctgaaatgtgcaaatgagccacgctagtcattcacttaaatccaaaaaaatgggaaacaaaaccatttctcatttatgacaat<br>tctccaaattaaccctatatttccttttttaaaaaaataaccagaaaaacaataaaatgtgacaaataacttggatcttccattgtccacttcagggtat<br>tgccactgcaatatattcttaccatatactttcctaccagtacaaactacaaataacttgggtaagtcctgtctgtacttactctacccacctactagta<br>atttcctctgaaaatatatatttagctaacaagtcacgttcatttacaataaaacatttctctgaattagttttcttgcattatt<font color="green"><u>AAAGAAATGGTATTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>A<br>AAGAAATGGTATTG</u></font>atagatggtcactgggggaccactgctcctccccgacagtatttaaataactggtataggctgcaagacttaccagatacctgctg<br>cgtgagcgaaggtttctgagtatgatctctatgccatccaactaatatatcaactgtatccttgatggaaacaaagagagagggggccaatcattttaag<br>atattactgccattcacctgtggaccatttcacagcaaaagatcctaaaaggagcatctatgttctacctacttgacattctagaaacttagaaagggga<br>gaggggcaggaaaataaaagaactacatttctgacaacaatgaaatagtttattttcttcaaatattttaaggtacgaacgtcagaaagaaaaatgcgg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	648	334	NA	intron:LOC440354:NR:002473:7/27
0	chr19	58015176	58015481	1000942	0	-	Yb8NBC548; RIP_Alu_chr19_058_02	GATTGGGGAGAAGGACCAAC	AGCTCTTGACCTTGAAAACAGG	SINE	Alu	Yb8	atttgccaagagacagcaaaagtgataaaagataagaaagcaggaggagaaaagcaactggagaaatgtagagaaaagctagatgtacagagagatgaag<br>gacagacagcaaggtagggagaggggcagaaatgtggaggctcatcagagtgagggagaggaggagggatgtggagccgggtcagacagagcagagtggt<br>gctggtggcaaggagaacagagggagaagcacagcggggaggacacctggggatctggggtgccagactgggtccagggggttataacagagaagagaga<br>atttaacagggagagcagagaggggagaagaggtggaaatctatggagattgaggacgatctaaagattggggagaaggaccaac<font color="green"><u>AAGAGGTTAAATAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGACGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAGGTTAAATAAG</u></font>ttgcaaggatggagcccagctaatttttgtatttctagtagagatagggtttcaccatgttggccaggttggtctcaaa<br>ctcctgacctcaggtaatccacccacctccacctcccaaagtgctggaattacaggtgtgaaccacctcagctgtccacccatgtattcttgattgaaat<br>aatttgcttatgtcttagttctacagttgaccctgttttcaaggtcaagagctgtgtgtttacactgctgcattttataaatgttagtgtgattttcttg<br>taaggaagaattcaatgttgggagtcaatttcatcagaacctttcaaaagaattttctttaacccaggcatgtgaaagatgcttctctaattttaaggat<br>gggatg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	588	267	NA	intron:ZNF28:NM:006969:1/5
0	chr20	20223291	20223614	1000943	0	+	Yb8NBC283; RIP_Alu_chr20_020_01	TGCGGACAAAACTTACAGAGG	TGTGGCCTTAAATGTCATCCT	SINE	Alu	Yb8	tgcagcaagagttctgggcttcactgggttatcctgttctgtcagcgactgtgaataggagtggcctgcactacaagggtaatttgtgtctgagaaaccc<br>ctgtttgagtgaattgtatttaacatgaatacaacatattttgatgcactctcagttcccagatggacccctccagtgatgctaatgtggtgccaaatct<br>ccttcaaatggacactgctccttccaaagttaagatcagccatcagtgcaacctcctcatcgctttctctagtgtagctgcttctggactctaagccctc<br>atttctgtaaggccctgtatgccaggattatgcggacaaaacttacagaggaggccaaaatatgataatgcagtctttacgtttaaa<font color="green"><u>AATAATACCAAAA<br></u></font><font color="red">GGTCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCTGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAATAATAAT<br>AATAATAATAATAATAATAATAAT</font><font color="green"><u>AATAATACCAAAA</u></font>aatgcaacaagtccataacaaaaaaaatcactaaaagtgatgctgatgacagactctcaagga<br>acaggatgacatttaaggccacaaaacgctcagactctcactgctctcagcctgcagcctgcagggctcctcaaggacttgacaagtcaccaccaactaa<br>gtgactgtgaccctcgtcttgaggtgcacagcctcggccacgtacatggaatccaagtcagccctcctaaacacaaagaagtccttgtaagctgaaggtg<br>ggggatttagtgagactcttggcaaagtcaagatttgttaaccacatgggtggatctcaaggtgtgcccccttgacacctgggctccctttcttaatcac<br>ttccaacaatgaaacctaaaagga	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	493	156	NA	intron:C20orf26:NM:015585:24/27
0	chr21	41006073	41006290	1000944	0	+	Yb8NBC280; RIP_Alu_chr21_041_02	TTTTGGGAACCCATTGAATC	CAGCTTGCTAGGCATTAGGC	SINE	Alu	Yb8	aggaggccttctgcatgcaactcttcctctgagcatctcccttcaggtaactcaacaggagacatcaaatgaggctctgctagttaccctctacaaccat<br>gtctttctgaaatgtttttctattttaaataaagtaatcagaaagtgccaactaacatcccatgtaagctccccaatagagcatgagcaataaataaaat<br>acaccaagatggaagaaagtactaaatctggattatcactggattaaaacatttttacaagcaataattattacattgaataaggcaatgacacaactaa<br>gactctcaggctgttatgtttttgggaacccattgaatctggacagtgacagtgtgtagtttgttttatgaaaacatactcatgt<font color="green"><u>AAGAATCTAACATTT<br></u></font><font color="red">CAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATCTAACATTT</u></font>atctattatataaacattttgatttttagttaaacttcacatattcaatgggctcatagccctaagc<br>ctaatgcctagcaagctgtgtgtgtttcgtaaatgctagttggtgcattcactgtccccatattttttcattttcccatctcataattcatgtggtatgt<br>caaacttctgttgataatataatgtaaccttttgaagtatttttggaatttctattttacaaaattacaactcttttaagtagattggaattacctctca<br>cagtttaggaactgactgtatagaagttgagacagagagagagagagagagagagagaaggtggggggtacaggcgaaagcctttagcgaggtcctgata<br>tagagagatgcttacaaa	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	58	399	166	NA	intron:DSCAM:NM:001389:1/33
0	chr4	57786270	57786537	1000945	0	+	Yb8NBC96; RIP_Alu_chr4_057_02	GAACCCAAATAGCCAAAGCA	TGTCCTTCCCCCAGTTTATG	SINE	Alu	Yb8	aagatgtgctttgttaaacagatgcttgaaggcagcatgctcgttaagagtcatcaccactccctaatctcaagtacccagggacacaaacactgcggaa<br>ggccgcagggtcctctgcctaggaaaaccagagacctttgttcacttgtttatctgctgacattccctccactattgtcctgtgaccctgccaaatctcc<br>ctctgcgagaaacacccaagaatgatcaataaaaaaataaattaaaaaaaaatctttaatccatcttgagttcatttttttatatggtgagtgataggga<br>tccagtttcattcttctagatgtggcttgccaattttttagcactgattattgagtagggtgtccttcccccagtttatgtttgtgtatgcttt<font color="green"><u>GTCAAA<br></u></font><font color="red">GGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG<br>GCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGC<br>CACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GTCAAA</u></font>tggttgtaagtatttggctttatctt<br>ggggttcttttttctgtatcactggtctatgtatacacttttataccagtaccttactgttttggttactattgccttgtagtataatttgaagtcaggc<br>aatgcgatggctccagatttatttttcaagcttaggattgctttggctatttgggttcttttttggtttcatattaattttaggatgttttttctaagtc<br>tgtgaaaaatgatattggcattttaataggaactacactgaatctacagattgttttgggcagtgtggtaattttcacaatattgattcttccaatctat<br>cagcaatgagatgtatttccatttgttcgtatcaactatgatttctttcagcagtgttttgtagttct	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	498	224	NA	intergenic
0	chr22	49590898	49591032	1000946	0	+	Yb8NBC126; RIP_Alu_chr22_049_01	AAAATGTCCCCTTTGTCCTTC	CCTACGCAGAAACACCCTAGA	SINE	Alu	Yb8	aggcacacagcttttcctctatagtttcttctagaaattgtatagttttgcatttttagtgtaaggatgattttgagtgattatttgtgtaagttgtaaa<br>gttttcatctacatgcatatcatttcttatggtttccaattaatcattccctcactatttttgggaaagacacaggatagtgggctctgttagagtagat<br>agctagctagacatgaacaggagggggagctcctggaaaagggaaagtctgtgaaggctcacctggagggaccaccaaaaatgcacatattagtagcatc<br>tctagtgctggagtggatgggcacttgtcaattgtggttaggagggagaagaggtacctacgcagaaacaccctagaacttctcttaagg<font color="green"><u>TGCCCCAATC<br></u></font><font color="red">GGATGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTCTTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGTGGAGCTTGCATTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAGA</font><font color="green"><u>TGCCCCAATC</u></font>atcattcactctgcaataaaaatgtcagaatattgctagctacatgctgataagaaggacaaaggggacatttttaagag<br>aaacctggcaccataagtacagattagggcagagaaagacattcaaaagaggcagctgcagtagatacaaacgtgaccgctgtcagcctgcctggtatgg<br>cgggaaggaggctggtgccagagtggattcggatt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	438	118	NA	intergenic
0	chr9	10818107	10818426	1000947	0	-	Yc1RG60; RIP_Alu_chr9_010_01	ATTTAGGGCTGTGAATTCCTCTC	ACACTTTTGAATCTCAGTCCGATA	SINE	Alu	Yc1	tatcctaaatatatatgcacctaacacagaagcacccatatttatatagcaagcacttggagaccttcaaagagacataggatctcacacaataatagtg<br>gaagacttcaaaactctacttacagcattaggcaggtcttcaaggcagaaaattaacaaagatattctggacctgaactcaacattggaccaaatggatt<br>tgatagatctctacagaattcttcaatccaaaaagccagattatacattctctttgttgcatggcacatactctaaaatcgaccacataattgaacataa<br>atcaatcttcagcaaacacaaaggaaccagaatcataacaaacacacttttgaatctcagtccgataaaaatagaagtcacaact<font color="green"><u>AAGAAAGTCACTCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCCCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGTCACTCAA</u></font>aaccatgcaattacatggaaattaaacaacgtgcttctgaataaaatttaagctgaaatcaagaa<br>gatatttgaaaataatgagaacagagatacaacataccagaatctctagaacacagcaaaggcagtattaagagaggaattcacagccctaaatgcccac<br>atcaaaaaattagaaagatctcaaattaacctaacattacaactgaaagaataagataagcaagagcaaatcaaagatagcagaagaccagaaataacta<br>acatcagaactgaactgaaggaaattgagacagggaaacctattcaaatgatcaatgaatccaggagctgtttttttttttgaaaaaattaataagatat<br>ataggccactagctagacta	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	551	216	NA	intergenic
0	chr1	156443682	156443993	1000948	0	-	Yc1RG75; RIP_Alu_chr1_154_01	AACTCTGTTTTGCTGCATCCTAT	ATGCTCCGGAATAACTATTGAGT	SINE	Alu	Yc1	ggaagatttcaataacccactttcaacaatagccataccatccagacataaaacaataataaggaaacactggacttgaactacactttagaccaaatag<br>acctagcagaaatatatagaacattccccccaacagcaacgaaatacatattattttcaaatacatatagaaaattctccagaatagattatatgccagg<br>ccacaaaagaagtcttaataaatttaagaagattgaaattataacaattatctttttggctacaacagaataaaactagaaagcaataacagaataaatt<br>atggaaaattaacaaatatgtggaaattaaacattatgctccggaataactattgagtcaaagaagaaattaagaagaaaatt<font color="green"><u>TAAAAATATCTTGAGGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCTGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGATGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGACAGCGCCACTGCAGTCCAGCCTGGGTGAAAGAGCGAGACTCCATCTCAAAAAAAAAATAAAAT<br>AAAAATAAAAA</font><font color="green"><u>TAAAAATATCTTGAGGC</u></font>aaatgaaaatggcaacataacataccaaaatgtataggatgcagcaaaacagagttctaagaaggaggttta<br>aaggaataaattcctgcatccaaaaagaagaaagatctcaaataaacaacctaacactacacctcaaggaaactggaaaaagaagaacaaaataagccca<br>aagttagcagaaggaaagaataacaaaaatcagagtaacacctagaaaaacaatagataaggtcaactaaactaagagttggttttttggaaagctaaac<br>aaaattgacaaacccttagctatactaagcaaaaaaaaaaaaaaaaaaaacaaaaaaaaaagagcaagaaagaagactcaaataaataaaataaaaaatg<br>aaacaggaggc	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chr19	788878	789175	1000949	0	-	Yc1RG94; RIP_Alu_chr19_000_01	GAGCTGACTCATGGCTGAAAC	CATGACCGACCTGATGTGTATT	SINE	Alu	Yc1	atattatttacattatataatatataatattttaaaatatacatatatattttttgagacagggtctggctgtgtcacccaggctggagtgcagtggtgt<br>aatcatggctcactgcagcctcgacctcctgggctcaagcaattctcctgcctcaaccccccaagtagctgggaccacaggcatgctccaccatgtccag<br>ctaaagtttttctttctttttttttttttttttggttggctgtttaattttttgtagaaatggggtcttgctatgttgccctggctggtcttgaactgcc<br>agccttcagggacgctcctgccttgacctccccaaatgctgggatcacaggcatgagccaccatgaccgacctgatgtgtattaaaga<font color="green"><u>ACTAGAGCTGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTTTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCAGAGATTGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAA</font><font color="green"><u>AA<br>AGAACTAGAGCTGTG</u></font>ctgtggccgggcgcggtggctgttgcctgtaatcccagcactttgggaggctgaggcagatggatcacaaggtcaggagttcaag<br>accagcctgggcaacatggtgaaaccccgactctactaaaaatacaaaaattagctgggtgtggtggcagatgcctgtaatcccagctacttgggaggct<br>gagggaggagaattacttgaacccgggaggtggagggggcagtgagctgagatcgcgtcactgcactccagcctgggcaacagagcgagacaccgtctca<br>aaataaaagggttattctcattcaacaaaagtgctgttggtttcagccatgagtcagctcatgctgaggcaagctgtttggcttgcagtcctcagtttcc<br>cca	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chr21	40672353	40672689	1000950	0	-	Yc1RG97; RIP_Alu_chr21_040_02	AAGTGCACACTTTGACGTTCAC	CCTTGATTGGCATTCAGGTTTA	SINE	Alu	Yc1	aaatacattttaactacccaagaagcacattaatagagtcttcttttaagatactcaaatacgtgacagtgggaaatgaaacataatttctcctcccctt<br>cctctaatccactcatgatttcagaggcaaccacagttaacatttgggcagatatctgctgatccaggcctctctgttcatttgcatacacaaatttatt<br>catataccactgcctttggtacataacattacagattgttatgtaaccactttagactatgtagtggagatttttctgcagggtatgtgtacatatacct<br>tactgtcttttatgtaactgcagagtatagatgtaccctaatttatttacttatttatcccttgattggcattcaggtttatgt<font color="green"><u>ATAAGTTTTCATTGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>ATAAGTTTTCATTGTT</u></font>aaattatgcatccgtgcatttgggggtgaacgtcaaagtgtgcactt<br>ctgagtttttccataggataatctttgacgttgcaagagggattgaaaagtatgcaagtctcacacttgaaatatactggcaagttgcccttcaaaaatc<br>aaaaggcttcaccaatttacatgcccacctatagaggtttttatttcccataccttttgtcaagaccacttattttcaaacattttattttttgttctaa<br>tctcctgtatgaaaagaatctctcattttaatttacattgatttgttcaagttctaagtaaattttgttcagcaattaattaaaacgtaattcatttcac<br>ttgtgaaaaggtgacatttttgcaatattaagttgac	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	441	88	NA	intron:DSCAM:NM:001389:3/33
0	chr20	34722363	34722677	1000951	0	-	Yc1RG101; RIP_Alu_chr20_034_01	CCAGCCAAAGAGATTACCAAAA	GTCCAGTCCATTTCTCAAAGAAG	SINE	Alu	Yc1	attcttaattaaatgactccatgagagaaaaatgagaagagttcaactttggactggatagccaaagaccttgagatagaaaagagtgaggatataaaga<br>atggcaaacccactaaggaaagaggtgaaaagtgaggtaagggaggtgcccagggcttagtcattagaaccagttgtactcagaagccattaaaagatcc<br>cagcaggagaggacccacggtccagtccatttctcaaagaagtaaggtaacctactttcatgttatatagctagtcagtaggaagacttagattcagctt<br>gtagttttttaaagacacgtaacagattcagaaaattagataagtgaaatttttagatctgctcagaaatatcaaagtatatcat<font color="green"><u>ATAAATATATCTCCC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACACAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAATAAATAAA<br>TAAATAAATAAATAA</font><font color="green"><u>ATAAATATATCTCCC</u></font>actatgtattttggtaatctctttggctggctcagccttctccagactgagctgttgatcttgcaagatg<br>attctcataccgagctatttcgttttttttcctagcaactcataaaattattttcttctctttttttaaattttaggtcgaatgcaattcccgcctgaac<br>cctataaatacaactttgctaaaggtaatgtgccttcttccctcacttccaacccttatatgtgcttcagattaatcatattttctggaataattgctta<br>gaaaggagcaaagcttccctctctttggttatctcattctcttctttttctttgagacagagtcccgctgtgttgccctggctggagtgcagtggcgcca<br>tctcagctcactgca	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	541	235	NA	intron:NDRG3:NM:022477:11/15
0	chr9	13830788	13831082	1000952	0	+	Yc1RG103; RIP_Alu_chr9_013_01	GGCATTTGCATTCTGATGCTTA	GACATGTTAGAGAAAAGGTGACATC	SINE	Alu	Yc1	acgagtacgtgtctgtatgcgtaacaagtaggttactgacagacatgtcaaaagagatagataatgaaaatacaatggccacaatttgaaattagatatg<br>caaattaaagccatttctccctacctaggaatttttctgagttgctgagaaaatagcaaaaatcggattgggaatagttttgctttattttcaaaattat<br>ctgtaatatttcttctatttattgtaaacaccttaatgataggtagaatgccatttaagcactttgaagtcccacaatgtgttattgaagctaacatgaa<br>aatattgcttaaatgctaattgtgtttgtggacatgttaagtttttaagaaacagaaataagcaggcatttgcattctgatgcttaaaaac<font color="green"><u>CCCTGTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCACACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGACACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>CCCTG<br>TTTA</u></font>gtgttttaatctaatgttgatgtcaccttttctctaacatgtctattccaactaaattcatattaaatttcaaattcataagacaatgcagaaagc<br>acagggtgtgcttgtcacacgggtggcttcaggaagagccattttaacctaaaacctgagagattagtctagacccagataaagaaaaaagacagaagga<br>aaagacagaaacaaggaaagagggagaaagacagggaaggagggagagcaggaaggagggagagaaaggaggagggagggaagaagaaaaaaaggaagaa<br>agaaaaggaagaaggagggaaggattccacttttccagactcctgaggttggaggaaaggaccttccaccagaagtttgttccttatgtatccat	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	383	79	NA	intergenic
0	chr6	2004660	2004955	1000953	0	+	Yc1RG139; RIP_Alu_chr6_002_01	CAGAGCTCATTATCATCCGCTT	GGGGCAGTCCTACTTTCATTTAG	SINE	Alu	Yc1	ttagctgggtgtggtggcgggtgcctgtaatcccagctacttggaaggctaagccaggagaatctcttgaacctgggaggtggaggttatagtgagccga<br>gatcacgcctctgcactccagcctgggcgacagagtgatcctctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtcatcatgtccagtgtttct<br>ttatgaacccaaaagaggtgtatatttgaaaatatgtaatttatttgaactattgtttttttaatttgaggcatattaaaaatctgattagaatattaga<br>aaatatttcacagttttgcctacagagctcattatcatccgcttaagtgatgttttagaaaattattcacttatttagcaagactt<font color="green"><u>AAAAATGCACTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>ATGCACTACT</u></font>gttcaactcctaaagaaaaaaaaatgtatttaatccttaaatactttttaaacttaccaaccccaaatatataataaataattctgacag<br>ggcgaagctcagagacactggcccccaaaaatttgcatagtaataaatatagtcttctaaatgaaagtaggactgccccattctcaacattggtattaga<br>atctaccttttgaatttctttacatttatgaaataagctttattaacgaaatgacaacaaataatataaccacattttcaaaattaaaaaaaatacataa<br>gcaaataataaacctccctcattttttcactaagctacgttttcctttcttcaaaactgttctctgtagtcattaaaccacagaagggacatcagt	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	557	247	NA	intron:GMDS:NM:001500:4/11
0	chr7	52770360	52770650	1000954	0	-	Yc1RG197; RIP_Alu_chr7_052_01	TGCCTTTGTAACTTCACATTCG	GTGGTGAATGGTTTGCACTTTA	SINE	Alu	Yc1	ttcagcttctgcatcttcagggaggagttttctgaccacttaattgaaaacagaacctcctaaataaccccttcattatttctattgcaaaactctgttc<br>atttccttctccacggggatcactggcttgtaaaggtttcttttcttgcttgttgtcttgttcattgtctgtcccgtccaatgtcacttaagctccacaa<br>cggtgtggactgatgatatctgtcttcttacttgcatccatccccaaaatctagcatcgtgcgaaagagacaggaattgctcaaggaatacttgtggaat<br>aaacatgtatgtttgcttttgtttgaataagttacatgcatttgccattgtaaactaaactggtgtggtgaatggtttgcactttatttaag<font color="green"><u>AAAAATGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAAAATGA</u></font>a<br>ttaggctattcgaatgtgaagttacaaaggcaattacctttttctgctacaagaaaaattccttcatccttctcttatatatgattgaaaatatattagt<br>aaagccttcttcgcttttccttgcccaatatgaaggaaaagtctcataactgaattctaagcaaatttttgcatatccttcaatttggaagtttctctcg<br>tacatagaattgtaaactgaattgggtttgttttgtattcttagactgtaaataaggccagaaaataataaataagtaaataatgaggtggaaagaaaca<br>cacaagtaaaaggaaaatatgtgaggataggtgtctggcatgaaaaatcctgaattttgtaaaggataagtgagaatagagggcatttctc	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	56	368	69	NA	intergenic
0	chr16	80721974	80722174	1000955	0	+	Yc1RG203; pAlu16-81903593; RIP_Alu_chr16_080_01	CACGTGTGTATATATATGTGTGCGTA	TGGACACTCTATTCTGCTCCATT	SINE	Alu	Yc1	ggtggggggtgtttgggtcatggaggtggattctctcacgaatagcttggtgctgtccttgtgataatgagaagttatcactctgtgtatatatgtgtat<br>atatacacatgcgtgtgtatatatgtgtatatatacacatgcgtgtgtatatatacacacatgtatatatatgtatatatgtgtatatatacacacgtgt<br>ggatatacacgtgtgtatatatatgtgtgcgtatatacacatacacacacacatatatgaaattgtaaattacctagagcactcaaaacaattttgaaaa<br>gaaaggacaaagttggataaatacactactgtagttcaagacttaatataaagctgcagtcatcaagataggtaaatattagtgtaag<font color="green"><u>AATGGACACATG<br></u></font><font color="red">TCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTA<br>CTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGA<br>GCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAACAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATGGACA<br>CATG</u></font>gataaatggagcagaatagagtgtccagaaataaatccacagcagcgtaatcagtaccaaggataatctgtagggaaaagtgtggtgttttaacca<br>gtagcaccagagcaactgaacatttgtatgaaaacaaaacaaaacaaaaccaaaccaggaatctcagccctttacttacaccataaacataaataaactc<br>taaataaagtatagacataaatgtaaaagttaaacctatacactttttagaagaaaactgtcataaccttgaggtgggcaaagataagaaacaaaatata<br>catcataaaaaatcctgacaaatcaggcttcatcaaattaaaactttctgcctttggagagatagcactgcaattacaaaaaggcaagctat	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	59	524	220	NA	intergenic
0	chr12	78231799	78232103	1000956	0	+	Yc1RG207; RIP_Alu_chr12_078_01	AGAACAATACTTGGCACCAGAGA	AGTCATCAGAGCAATGCTTTTCG	SINE	Alu	Yc1	gtaccaagtttttggtccaaattgtgtaggataagttaaccttaaattgcattctattaaccaataagagggtatttccgtaagcatagttatgttgaaa<br>tacagttttaaaaagcaaaaaaaaaaaaaaacaaaataaaagatagacctgctaagcttagtcaattaaaaattaatggtgagacagaactacagggtag<br>attaaagctcagcctatatgcatcaccatgactccgcttactactgatgtctccttcggcttgttgcttaatcctttcataaaatgggattagtatttac<br>tcacctccatgagttgtgacacactctaaatgagataattaatgtaaagcacttagaacaatacttggcaccagagaagctctcaaaaaaat<font color="green"><u>ATTAGCGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGTTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>ATTAGCGG</u></font>tttttgttattaaaaacattggtcagagcccttatttccttgccagccgaaaagcattgctctgatgactagatttacatccttcct<br>tttttgaggacagtgggacagcctaagtgttcagaaggcattgtcatacatggttttaataaaaaagtggatatctgagcctagataccatgtgcgagag<br>tctgtgggatgtgaaaagattgcacaaagacgaacccagtttaaggctcagcacgtgtgagtggaagatagtgctaccatggtgtgacctcagtgattgt<br>gcaccaattaattcctctaagctctgacaccccacaaaggaactcaaagtttcaggctctgctaaaataagacagacaatagcaagtgttggcaaagatg<br>tgaaa	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	63	426	113	NA	intron:SYT1:NM:001135806:7/10
0	chr14	85412604	85412909	1000957	0	+	Yc1RG279; RIP_Alu_chr14_085_01	CTTTGGACCATAATTTGAGCAAC	GGGACTGGGATAAGAGAGTGAAT	SINE	Alu	Yc1	attcatcaacatcatgaataaccatagtaaatagacatttagagccatgaatggacttgctcaagagagcaattaaatcagtggcccctgggcttgatgt<br>tttatttcctttgaaaaatattgttgaatccttattatgtgtgtttactgtaaggaatacaaagataagaaagacaatttcaacctcaaaacaatgcatg<br>attctgtgagagtgaaaagagagggaacatcttgtgcatgaataataaagagaataagccaaaaagcaggaggggactgggataagagagtgaatgctga<br>gcctatgagtacacttgttccaatttcatattcaaacctaaagttgtgctcctcctcctaaatcatctcccagtgattttcttgc<font color="green"><u>AAGAGTACTAGTTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACAAAAAATACAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAGTACTAGTTCC</u></font>cctggaggtagacagaaggactgacgctgtggctcatattaaatcctgtcccagctcctgggtaaaaagagcaatttat<br>ctgagtttagggtagtgttgctcaaattatggtccaaagtcttctgcctcacagatactcagagtgccttttaaatgcagatcagtttcaaaatgtatct<br>cagttgaaactgatcaaatgtatctcagttaagatacagatcaaatgcatctatttctaatctgaatctcttgggagtaaaagccagagcttatatttga<br>aaccatgtcctcaggtgattgttttacccaccaaaatatgcaaatcaatggtgtggggcaagcaagaattacattgccagtgatttaaatgagagtcttg<br>gttagg	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	53	567	246	NA	intergenic
0	chr13	75209609	75209925	1000958	0	+	Yc1RG345; RIP_Alu_chr13_075_01	GGCAAATCATAGATTTCATAGGG	TTGGGAACCTCAACTAAGAGACA	SINE	Alu	Yc1	gaatagagttgttggagatgatataactagttataatgagctcatactggggtaaggagggcccctaatcttaatatgactggtgtccttctaaaaagat<br>ggcctgtgaaaacacagacacacaggaagaatgccatataaagataggattggagtgatgcatctacaagccagagaacacctgcgattgctggcaaatc<br>atagatttcatagggagtgtggctttgctaacaccttgattttggacttgtagcatccagaattgtaagacaaaaaatctttgttgccttaagccacctg<br>gtttgttccaaaaggaacaaagtaccaaatatagctctaggaaattaatacagataggtacatgttttagttaatacctttttt<font color="green"><u>AAAAAAAAAAAAACTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTCTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGGATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAA<br>TAAAATAAAATAAAAAA</font><font color="green"><u>AAAAAAAAAAAAACTT</u></font>tttactttgaaataaatatagattcacaggaagctgccaaaaaaaaaaaaaaaaaaaaaacacagta<br>caaaaatgtcctctgtactcttcacccagttttccccatttccagcagaatttttttggtgtctcttagttgaggttcccaaagaggaatctgaatggat<br>tccttttctttgaaggctacagatatcccaggtcactggccagcctgtggatgagttccataagaagacagtcgtcttggccaaatgagctgtggtcagg<br>agtgttgttttttttttggctcattcagttcaggttgacgtgggtactgtgaaggaggtttgtgtaaggtagattcaccaaggcgattcaaatatagtaa<br>aaatttctgtgtaaggg	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:LMO7:NM:005358:4/30
0	chr7	42393477	42393762	1000959	0	+	Yc1NBC01; RIP_Alu_chr7_042_03	AGTACGTGAGGTTTCTATGCCTTG	GATTTGTCCATAATAGCCCCTAACT	SINE	Alu	Yc1	tgttttattaagatataatttacatgacataaaattcaccatctaaaggcacacaattcagcgttgagtagatttaccgagttgtacaaccattactgct<br>gtctaattacagaacattttctccataactcacttaaaaaagaaagcaacagaaatgtattttctcacagttctgcaggtcaaaagtctgaaatcaaggt<br>gttggcaggatgatgcttcctttgcaggttttagggagggacccttccttgccccttcccagtttccagcggccactagcgatccttggcctgccttggc<br>ctggggctgccagagactgtggctccctccagtctctggctctgttgccacatggccttctctctgtgtgtctctctctgagtct<font color="green"><u>TCACATGGCCTTCTT<br></u></font><font color="red">TTTTTTTTGAGATGGAATCTCTCTCTGTCGCCAGGCTGGGGTGCAGTGGTGTGATCTCGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCT<br>TGCCTCAGCCTCCCAAGTAGCTGGCACTACAACTGCATGTCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGCTTTCACCATGTTGGCCAG<br>GAAGGTCTCAATCTTTTGACCTCATGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATACAGGTGTAAGCCACTGTGCCCGGCC</font><font color="green"><u>TCACAAAGCCTTCT<br>T</u></font>ctaaggatgccagtcattggatttagggcccaccctaatctagtatgacctcatcttaccttaactaattacacctgcaaagacccttattccaaatag<br>gtacgcattctgaggttctggttgggcatgaactttggggtacactattcagcccagtatagacacatgagggggattcactttctgttcatgtgattcc<br>cttttcagtacccattttgtacatgtaggtttgagagggtccaatgcagtatggtgctgtttgctgcctaagtcatgaattatttgagaaattagacaaa<br>aatattagctgatggaagtcaaaatatcatctctttttactgatagtgtaacttgaagaatgtagcttatatctggaaccaagtga	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	481	159	NA	intergenic
0	chr7	33370072	33370384	1000960	0	-	Yc1NBC02; RIP_Alu_chr7_033_02	TCTCTCATGAACATAGATACAAA	CGTGCATTCTTGAGATAAAT	SINE	Alu	Yc1	ggggaaggggaggggagaggagggggaagggggaaaatataaggaagaacatcaaaaatagaactgattaagcagaagaaagaatctgtgaactcaaagt<br>cagattattagaaaatacagtgagaggaggaaaaaaatgaaaggaaagaagaaaggctgcaagatttagggaacagaatcaagcaaaacaataagagaaa<br>accttccaaatctggagagaagtataaatatccagatataagaaactcatgacatcaaaacataaaatgtggggggatggagtaaaaattattcacataa<br>ctgtagaaaaaaactaaattacaaatcaatttctctcatgaacatagatacaaaaattctaaaatacagtttggcaaattaaatc<font color="green"><u>TAAAAATATAGTGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAAAAA<br>ATAAAAAAAAAAA</font><font color="green"><u>TAAAAATATAGTGAA</u></font>aagataatatatcatgaccatctataatttatctcaagaatgcacggttgggctaacattaaaaattaatca<br>atgtaatccaccatatttaatcaaataaagaagaaaacgataagaatgtctcagctgatgtagaagtagtcttgaaaaaatccaatatccattcctgatt<br>acagtctcagcgacctaggaatagaagggaacttcctcaacctggttaaaaaaaaaaaaaaaatctaaaaaatacttatagctaaaacatacttaatggt<br>gaaagacaatgtctgttctcaccatttctattcaacattatcccagaggttctagccaaggcaaaaagcaagcaaaaacaaacaatccagttggaatgga<br>agaagtaaaactg	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	443	102	NA	intron:BBS9:NM:198428:16/23
0	chr14	34375055	34375372	1000961	0	+	Yc1NBC09; RIP_Alu_chr14_034_01	GCCCAGCTGGAAATAGCTT	AGAAATTCTGCATGTGTCTCAG	SINE	Alu	Yc1	gtttctctcttgttgccaggctggagtgcaatggcgtgatctcggctcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagcctcccg<br>agtagctgggattacaagcatgcgccaccacgcccagctaattttgtattttcagtagagacagggtttctccatgttggtcaggctagtcttgaactcc<br>cgacctcaggtgatctgcccgcctcagcctcccaaagtgttggattacaggcgtgagccactgcgcccagctggaaatagctttttatgaggatagtctg<br>gaatgtatataccttccgctaaaaagctatttttagtagccatttaaatttatatctcaaaaattcaatggaccaaaagcaaattat<font color="green"><u>AAAACTTTCTATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTTTCTATA</u></font>actgagacacatgcagaatttctacagggtatttggggtagaaggtaaatagttaacagcaaagggaaa<br>gaagatctagaagcctgggaagacctacttgaaataagagaccgaccctctgtttgggtctctaaaaattgaatatgctgaatctatagcatacttcaca<br>actgctccccattctgcctcattaacctttattttctagtaatacaattgcaagaatatttataaaaaatactatgcttggacaattaagtcaatatttt<br>ctaacagtgaactaatttgaagtttagagttaaaaaacaaaaaccttaaattaagtttatgtgatatctcattttaagtggaagaaaccagagcatttga<br>gcgagtcagctattcaca	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	63	490	159	NA	intron:BAZ1A:NM:013448:3/27
0	chr7	83566310	83566623	1000962	0	-	Yc1NBC53; RIP_Alu_chr7_083_02	AAAGCTATCAACCATGCCAACA	GAAAATGCTATTTTGGGGAATG	SINE	Alu	Yc1	cgtaaaattacaattctcaaatgaaaacatcaagatatctaaataatagccagatctcataagccattagatgaaatataactgaggtgatgacactgtt<br>taaactcctcattaaaaaaagcgtttatgattcttttgtgaattagtcaaacttgttttatagcatattgtggttcatgcacatttaattttaactcctg<br>agcttacaaatcagctgcgttaagctgcatttatgttgtgcataaaacattaagctactataggcaaagttatgtgagttttgcattgatagcatatcac<br>aaaggagagtttctccattactcgtaaataaagaaaatgctattttggggaatgtatatgtgaaagtaattcaaatgcacttttcttttaaaaaa<font color="green"><u>AATTC<br></u></font><font color="red">AAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC<br>GGTGAAACACCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAGAAA<br>AAAAAAGAAAATGT</font><font color="green"><u>AATTC</u></font>ctgattaatctctggttattctatccaatttatcttctgctataactattgtccacgattgttgttattacttttattact<br>attagaggctattattgttggcatggttgatagctttatcaaaattatataatttgattttaataattctgtgaaagaagcattatctctgtttctcaat<br>tgaggaaactaaggctcagggaagttcaacatgttacataacatcacacagccagtatatcatctgtcctcatgcccatcataacaaatggcctttctaa<br>tggcatcaatattataccccattgagattatgctatatgatgtgcttattaatacttagttctaaacactcaaaactttgaatttcaagttaaatccatt<br>acaatttgcattat	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	505	186	NA	intron:SEMA3A:NM:006080:4/17
0	chr10	10748550	10748858	1000963	0	+	Yc1NBC60; RIP_Alu_chr10_010_01	GAAACCGCCAAGATTCTCACC	TCTCCATCATGATTCCCAACTGA	SINE	Alu	Yc1	ataattttaacctctcccttttccagatgaaaagtctcagtaaaaaaacagctactgaatgtgcagcatttgtcagatgccactagtcaactcacttcag<br>gtcggggtgctgtgttggctccgtgtctctcaagaggaaataagtcagtgggggcaggttgtgggttggtgcccagcatagcaccaggtgaccacacacg<br>ctcctccacctccaacttattaatgatctcaagcacttcacaccatttctgcccttaagcttagttgaagaatcaaagatgagtctcaagttggtagtgg<br>aagtagcaaacaaggaaggagagaaggccctgaaatcacctatctcagaaaccgccaagattctcacctaaggaggatgattatgtgtttgt<font color="green"><u>AAGAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG<br>AAAAAAAAA</font><font color="green"><u>AAGAAAGA</u></font>agatggtttaacctttagcctattttcagtggttggcttggttttgcacacacattcacacacacatacacatacgttcatgc<br>acacaccacagcatacatttataagccaaaggccctctaaaataagtcagttgggaatcatgatggagatgtgaataatagaagaaaaaatgattatgca<br>tcccgggcaatccaaaaggttcctgttcatttggaaatattttaagatgtcagggctgaaaggcaccatgctctttgaataaatgaattggtctcctggc<br>gttgtgtctatggaagctatagttattactactcagacagctgactttttgttttaattatgcaacagaaactggaaaaatgtttggggtcaactttcta<br>ttttagtga	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	522	205	NA	intergenic
0	chr6	91294312	91294617	1000964	0	-	Yc1NBC63; RIP_Alu_chr6_091_01	GGTACTCAGTAACACATCAAGA	AAGCTGGGTGGTGGGTTCAC	SINE	Alu	Yc1	tacctgtcactgtttattatcctgaatccattgtggcttttcaagacctaaaatcatataattttagcactatatggaacacttctcatcacattcttaa<br>cccagccccaacccctctccagataaagagaggttgaagtgatctgaagcagacattacagcataattagaactcacatacgatggattctactcaaagg<br>tacttttgtattgcatttcattttacttgttgcagtcttgaatttgagtgtttgtatatatgttgaagctagatataagattcttcatgaatttatttta<br>agttttattttctataactccatgttcttttttaagtctcttctttggtactcagtaacacatcaagaaaaaaaaggtgcttttt<font color="green"><u>AAAAAGTCCTTATGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAAGTCCTTATGA</u></font>aacccattttagtttctgtgtcctttgaaaggctttaatatatgaaatataaatatgtagacaagaatgtatataatgt<br>ataagttatgaaaataaaatgagcacttgtgaacccaccacccagcttaaggaatggaacattagcaatcccagtgggggttggtccctgtgtgttcctc<br>gcctgtggccttccctgtcatttccccaccaaccctcagtgccatgttctgtcatatgtcatgtttccagatatcataaataccttttatctgattaaga<br>agtcctcttcccactgggcacaggggctcacacctataatcccagcacgttaggaggctgaggcaggaggatcgcttgagcccaggagttcaagaccagc<br>ctgcac	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	502	181	NA	intron:MAP3K7:NM:145331:13/17
0	chr20	26097021	26097313	1000965	0	+	Yc1NBC64; RIP_Alu_chr20_026_02	CAGATCCTGGTTCGTAGGAGGTG	CAAGCTGTGTATTCTTGATACTGC	SINE	Alu	Yc1	ttccacgtaacttagtaaaaatctctgtgaatagttccccaaattctgcatttttaacaagctccccgcttatggagctgtctccttgagtgcaggaagg<br>acaggctgttttactttataactgggacagcaagtacagatcctggttcgtaggaggtgcctagaaaatacatgataggtaattagttaaattgaattaa<br>taactataataagtagtaaaacttaataaatgctagtatttttttaattgtatatatctactactagatacaaactttgagtggtggtgttcatttacca<br>aagttttggtttttacacttttccaaaaaatgtcaattgctattctgtactctatacaatcagaaggaagtcagtttgagcacat<font color="green"><u>AAAAATGACATAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTCTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAAATG<br>ACATAATA</u></font>ttctgcagtatcaagaatacacagcttgatacttcagatttatttttatctttgaaagatattaataaaataagtaatttataaaaacaaag<br>agattttaataactgaaacaaaaatactaattatgataagactaaacatgtaatgtagctgtaggttgaaataaacttgaaacactctagtgtctgcata<br>ccttttgctttccccaagaactatttctgcaaaatattcactagcctgcagagataacccacatagactatgttattaatatgcaatcttccttcctgaa<br>acagtttacatatgcagtatatagcatctagaccttgtaattgaattttcaaagtttgctgtggtttgggagctgcatatgggtcagtaatca	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	600	292	NA	intergenic
0	chr20	46978148	46978441	1000966	0	-	Yc1RG95; RIP_Alu_chr20_046_01	ACCTAACAGATGACCTGCTGAAA	GAGGTAGAGAAAGGCAAGCATTC	SINE	Alu	Yc1	cttcactcatgttggagacttacaaaaaggtctataaaccaactaataggggaggtagagaaaggcaagcattcagttccttttcctttaaagactgcaa<br>caccggctgggcgcagtggctcacgcctgtaatcccagcactttaggaggctgaggcgggcagatcacgaggtcaggagatcgaaaccatcctggctaac<br>acggtgaaaccccgtctctactaaaaatacaaaaaattagctgggtgtggtggcgggcgcctgtggtcccagctacttgggaggctgaggcaggagaatg<br>gcgtgaacccaggaggcagagcttgcagtgagccgagatcacgccactgcactccagcctgggcgacagagcgagactggctc<font color="green"><u>AAAAAAAAAAAGATTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAAAA<br>AAAAAGATTGC</u></font>aacaccaatgcctctgaatttcagcaggtcatctgttaggtgccaggtactgtgccagttacttactgcactagtccatttaacctttg<br>caataatcctgtgacaaaggtattactatctttatcaccttgggaaactgcggcccaaagagggatcactggactatcaataagcaaatcaaactttcaa<br>agtctcaatcaactctctgccaatcctacatataaatgcttttcaataatcaagaacaatccagttttttgatgctgcttccagacagataacctcctcc<br>tgaagaatccacagtggttttcaacaaaaagtaatcttccagggtcctgagtcctgttatttctcaaaatttttatgatacatagcacttataa	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	701	390	NA	intron:ARFGEF2:NM:006420:1/39
0	chr19	13340571	13340870	1000967	0	+	Yc1RG130; RIP_Alu_chr19_013_01	AGTAAGAGAGGGAAGCTGTCAGG	CTATTGCAGTCCCCATTTACAGA	SINE	Alu	Yc1	tgggcttgctctgtcacccaggctggaatacagtggcatgatcacggctcactgcagccttgacctcctgggcacaagcgagcctcctgcctcagcctcc<br>cgagtaggtgggactacaggcacacttcaccatacctggttccactaccatttttttcttgaggctattaactcaggtctgaacgatgacaacatcctat<br>gtttgtaaccactatggtatctactaggaaagtctatgatcaaaatgaaggttcaaacatatagcctgaggctttgcttcttgattgcaggaacttccca<br>tggctcttgatgggtggagaccacagtaagagagggaagctgtcaggatagctcgaggggccatgccactccaagggctt<font color="green"><u>AAAAATGTAATGTGGGTGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCTCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAATGTAATGTGGGTGCT</u></font>aacagatgcagtgtggtgcagtggttaaggtgctggatactcttggtgtctggccaagatcccattttctttctggtgta<br>cccgccctccagctgctatggatgttggttgctaatgcctcccagctgcctctcttcttagtagaattgcccttggtgatcaaaagctatctcacctggg<br>agctactgcgtctctacctcccatccacagtgactgactatagaagtacaaaaggccggcatccttgccatgcattggaggacaactctggtgtcacaca<br>cactccagctgaaattgcgtccctgctctatccattccccagccccaccctgctgatctcctgctgtctctcccaagagccgtcccccaataaagcaggt<br>	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	59	887	568	NA	intron:CACNA1A:NM:001127221:4/47
0	chr21	23750832	23751057	1000968	0	+	Yc1RG140; RIP_Alu_chr21_023_02	CTGGTTATCGATTACAGAAGCA	TACTCTCCCACATCCCTTACTTG	SINE	Alu	Yc1	tgattaaacgaaaaaaattacgcttttaaagaattaaagttagttttattctgaagtcttactcaggactatagactgaaccagcctctaaaagagcagc<br>catttagaaaggttctattagttctagcacagtattttagccctgtttatggacaggtggtagaaattttaaaaattttattagaattggttaggaaaag<br>taaacagatactttgtgcaaaaccacattcaactttctcagacattccattaaagtaaataacatcaaagttttggtgtaggagtaggagtagatctggt<br>tatcgattacagaagcataatcactaacatcaacagatgttatctcctgtataggaaaaagcaaagactacatcatttactgttc<font color="green"><u>AAGAAATATAGTGAC<br></u></font><font color="red">AGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAAATATAGTGAC</u></font>tcggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggtcgaggcgggcagatcacgaggtcaggagatcg<br>agaccagcctggctaacacagtgaaaccctatctctactaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtagtcgcagctattcgggag<br>gctgaggcaggagaatggtgagaacccgggaggcggagcttgcagtgagccgagattgcgccactgcactccagcctgggcgacagaacgagactcagtc<br>aaaaaaaaaaaaaaaaaaaaaaggaa	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	58	770	451	NA	intergenic
0	chr2	150467556	150467867	1000969	0	+	Yc1RG148; RIP_Alu_chr2_150_03	GTTGGAAAGTGTGTCCTAAAGCA	ACACGTTCTGAAACATCCATCTC	SINE	Alu	Yc1	ctgttaagagactgatcaagtcttaggtgactctccaggccaaaaggaattttaagccaccatgtagtgctatctcccttactttgtagcctctgaatta<br>ggggcacatacagagcaaaagtcagattcctgattaataatccaggaccctttttaaaaaaattttatctcatcatgcttacactgtattctgatatatt<br>gtgtaccataaatataggaaagtacagggaaaactgaaataattatgtaaaaatattctagcttttgcagttgctaggtatactttaatttaggcaatag<br>acatgcttctaaaacacctaagcaagaaacacgttctgaaacatccatctctactatctaaagaatttcgctaagagaaccaatataaaac<font color="green"><u>AAACAAGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAACAAGCA</u></font>aaaataaatatgaaactggatgctttaggacacactttccaactttattccaaggacaaatcgcacccattcaaacctc<br>cttttctctattcttctctcttcttctcccctttgtgaaaaatatctccttcagcacttgtgaaaactttaaaatttgtgctccaatttaaaatttgatc<br>attgtttgaaagtatttaattttttaaaggaaaatacttattggactaataacaatattagcagttgttctttactgtgaaacaattgagatagttgttc<br>ttgacacgtggctgaggctgtctatactgagagagtgggactttgattgcaagaaggggctgcttatgagcacattttatggctaatagacatgaaaaag<br>ggtctaggaaaa	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	58	436	115	NA	intergenic
0	chr2	171048135	171048403	1000970	0	-	Yc1RG155; RIP_Alu_chr2_171_01	CATAAGTTAGCCCCACTGATATTTG	CCCAGCTTACTCTGGAAATCAG	SINE	Alu	Yc1	ttttctgtaagtcatccctaaaccatcgtgctcaggggtaggcagatatttactgtaagtaactagagcatgctgtaccagtcacggctaagaggacaac<br>tgctcagctgatggactgggtagtgttctcctagagcaccatgttgggagggattccaaggccacatcgaggctgtgaagaaaacatgccttgactgaag<br>agccaggtctgcagctagggttgaagagtgaagctgtgctcatacccatgtatttgccatccccatgccaggaggtttcctcacattctctttcctcttt<br>ttctccattttgttattttcttcattgctttttctttttgctgcttcattgttattatctaacataagttagccccactgatatttgtttt<font color="green"><u>AAAGAATCC<br></u></font><font color="red">TTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTATTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGC<br>GCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAATCC</u></font>ccaagcaaggagttttaattca<br>gccactgatttccagagtaagctgggcaagcaaatccaaatgtccagatattatttaatgccttcataatgtcttttctcttgttttcctttattatttc<br>ttctttcctacaactgaactaattcatgaggttgcttataacacagaacatttggaaaatcagaaaagatagcctgggcttattattctgccaccattca<br>gtgttttggagaacagtgaaatgaatattaattcttgcatccactttttcaaaccaccactacagattcctggctaaatctacagagctatcaactacag<br>aaatgatttttctaattgactatgtgaaaagctgctgccagcagcatgggctccatgaaaaaggcaggg	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62.5	364	86	NA	intron:MYO3B:NM:001083615:25/34
0	chr2	34497153	34497441	1000971	0	-	Yc1RG158; RIP_Alu_chr2_034_02	CCATCCAGGAGTCTACCAAGAGT	AATGCCGTTTCTGACACAGAG	SINE	Alu	Yc1	ttactggcttattataaaagatatgataaaggagacagatgaacagccagatcaagagttatataaggcaaggtctggatggggtgccaaccacaggaac<br>ttctttccttgtagcattgggtcgcagcagcctcttgccatgtgggtgcttgccctatcctttttaaataattgtggacaccagacgctctcagaacctt<br>gtattcttgagattttaatggaggcttcatcacctagacatgattaattatttgacttcttatcagctcccctcccctccctggagaataggggatggga<br>atgaaggttccaaggttctcatcatggcttggtctttctggtaaccagccccatccaggagtctaccaagagttacctcatt<font color="green"><u>AGAAATTCCAAGAGAGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGACGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA</font><font color="green"><u>AGAAATTCCAA<br>GAGAGTT</u></font>aggagctctgtgtcagaaacggcattgaagaccaaatgttagaacaaaagatgatgctggcactcctgttacttgggaggttacaagggtttt<br>agaagcttgtgtcaggaaccagtagcagagactgacctacctacctaccttccttccttcctccctccctcctttcttcctttcctttcatttcctttct<br>ccctctctttcttttttcctttctcttatttttcaatgatattagcgaatatcatcaataatccacaacaaccgtctttatatattagaaagttattaag<br>ctccttgtgataaataaaagtctcccagaatttcagttcttcccgaaagctcaaattttatcattgtcaatgaacactgtcaattgttt	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	63	469	162	NA	intergenic
0	chr6	121361006	121361315	1000972	0	-	pAlu6-121254345; Yc1RG258; RIP_Alu_chr6_121_01	CCTGCAAAGTTAACCGTCTATGA	GCTCTGAACAGTAACTGGCACAT	SINE	Alu	Yc1	gaatttagcattaggataggtttttatatattaggcagctggcttttgccatccagagtgtttcatagaaatcatcccagcccaaattaatgaagaaagg<br>acagattgtttagtaaatagtttgcaaaaactggatcactccgtggagcaaaatgaaactaaatttctgcctaacactacaaagttggatttcaggtaga<br>ataatcctgcaaagttaaccgtctatgatataggagactatttttgtcacctaaggttgaggaacgacttcataaagaaaatctgaaaagcacaaatcat<br>gagctgaaagaatggatttatttgattgtgttaaaattaaagatttcttttaaattacgggtgtcatgaacaaaataaacagatat<font color="green"><u>AAGAATGGGAAAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAACATTAGCCGGGCGTGGTAGCGGGCGCCTGTGTAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC<br>CCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAGAA</font><font color="green"><u>AAGAATGGGAAAGG</u></font>tatttataatgtctatatctgacaggagatatatgtctacaacacacagggaactttacaaataaataagaaaaat<br>ataggaaaaaacaataaaatataggaaaagtaggagcagactatttgcagaaaaattactcagttatcaggcatgtaaggggatgttcaatatcaagtct<br>agtagggataatggagaaatggaatatagtggacatacaatatgggatatgatgtggcagttagaagtcatagcccagctttgtgtagtaacatggagag<br>atcttatgaaataaggatatatgaaacatatagtaatgttaacaataatagaaaacacttactagtatttactatgtgccagttactgttcagagctcat<br>aacaaccgtg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	891	567	NA	intergenic
0	chr9	72653432	72653733	1000973	0	+	Yc1RG291; RIP_Alu_chr9_070_01	AACAATAGACACCTGAAGCCAAA	TCTGTCAGTTTTGGCAGTATGAA	SINE	Alu	Yc1	agataaatgagatgcagccaggaaaacaaaggatttgaaaacatgaaaggaaaataaaggagcttggaggagataatcagaattataggtagaagtaaaa<br>gagatgatggggaggaggcaatattggaagaaatattggctgagtattcctcggaattatagaaagataccaattctaacatgcagaaagttcagtgaat<br>tctaagcaggataaatgaaaagaaacctcacttacatacacatcacatgtaacaccaaagggaggggaaattcctcagaagtggctggaaataaagacag<br>atcatgtacaaagaatagtcattagactgaagacctactcctcaacagcaacaatagacacctgaagccaaaaccttccatgtgtc<font color="green"><u>AAAAGAAATTACCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCTT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCTAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAGAAATTACCT</u></font>gtcagtctagaattctacattcagcaaaactatcttttaaaaatgagagcagattatagatattttcatactgccaaaactgac<br>agagtttacttctaggcaccttcactgaaggaagttgtttttgttattgtttttgtttgtttgttttgagatagagtcttgcactgttgcctgggctgga<br>acacaatggcatgatctcggcttactgcaacctttgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggtgcccac<br>caccaggcccagctaatttttttgtatttttattatagacggggtttcttcatcttgtctaggctggtcttgaactcctgatcttgtgatctgcccacct<br>cg	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	64	454	138	NA	intron:TRPM3:NM:206947:3/25
0	chr9	121396913	121397088	1000974	0	-	Yc1RG348; RIP_Alu_chr9_119_02	CCACATGAAATACTATAGTGGAGT	AGCTGGCTGTTGCTGTCACTA	SINE	Alu	Yc1	ttctccataaaataaatgcgttgcagaagaactctgtaaacagcacatatcacgaagccatgaattcagatgcaacatgaggcgcaatttcctcccctct<br>ccgtaactgctttattctagtatttcttaaatatttcaacaatatgatcccacgttttatgccattaaatgtttagattccacatgaaatactatagtgg<br>agtattactaacagtaataataatagtaacaataaaaacagcaatgaaactgataataataaagattataggccaggcatggtggctcacgcctgtaatc<br>ccagcattttgggaggccaaggtgggcagatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctact<font color="green"><u>AAAAATACAAAA<br></u></font><font color="red">AATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGAAGCTTGCAGTGAGCC<br>GAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATACAAAA</u></font>ttatctgggctc<br>agtggtgcacacctgtaagcctagctactcaggaggctgaggcaggagaattgcttgaacccaggaagcggaggttgcagtgagccaagatcatgccact<br>gcactccagcctgggcaacagagtgagactctgtctcaaaaaaaaaaaaaaaaatagtgacagcaacagccagctttaaagtgtgcttgttacataccta<br>ctgatcattgtattaagaaatggctatatgattatctcacttaatcatcataggggccctgtgcaatagaccatttttatgtgcatactacaaacaaaac<br>tcagagaggtcaagtaatttgcccatggtcaaacagctaagaagtagtaaagctaaaattcatatccaagcttttc	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chr16	69617819	69617820	1000975	0	+	Yc1NBC23; RIP_Alu_chr16_069_02	TGCTCAGGTTAGGGATGTTAATGC	TTCTGAGCTGCTGGGGGACT	SINE	Alu	Yc1	ctcagcctcccaagtagctgcgattacaggcatgtgccaccacgcctggctaattttgtatttttagtagacacggggtttctccatgttggtcaggctg<br>gtctcgaactcccgaccacaggtgacccacccacctcggcctcccaaagtgctgggattacaggcgtgagccactgtgcccggccaaatttttgcctttt<br>atacttaaacatttaaaaatcatgcattaggaattaatatttctttggactcaaaaagcctagatttttataaagcagaaaggatcaaaagtgaatttac<br>agcatgaataggttatatagaagagtgctcaggttagggatgttaatgcattccagtctcttctcaattatgtagcatgatttag<font color="green"><u>AAGAACATTCGGGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAACATTCGGGGA</u></font>tgcttttagtaaagcttaagctgagtttagtcccccagcagctcagaattaatgccttcaaaaatatggacaactctt<br>gataaccacattataaatatgctcttccaacagctgtcagtgtcttgagataagggcctgtgttctattcatctttacatcctcagtgcctagcacagta<br>tttgtcacatggtatacacacaataaaagttggctgatcacctgaataacagagagaaggaacacattaccttttccacaatgagagataaccccccctt<br>ttgttgaactgaggatgcgttttacctgaaaatgctctatgaagaaataatctaatgaaataaagtggaatctgtgaccttagagaagctaagcaaggga<br>ctagctt	Other	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	445	120	NA	intron:HYDIN:NM:032821:20/86
0	chr17	15471490	15471789	1000976	0	+	Yc1RG93; RIP_Alu_chr17_015_01	GGGATTCAAGTGTGGGTAGAAT	AAAGGAAGGCAATATGATGTGG	SINE	Alu	Yc1	tgcattttattgccttttatacaatgtccatgatctaataaggaaggtggccgggtgcggtggctcacgcctgtaatcccaggactttgggaggccgagg<br>cgggtggatcacgaggtcaggagatcgagatcattctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaattagccaggcttggtgacgg<br>gtgcctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacctgggaggcggagcttgcagtgagccgagattgtgccactgcactcca<br>gcctgcgcaacagagcgagactccgtctcaaaaaaaaaaaaaataaaataaaataaaataaaggaaggcaatatgatgtggtggtt<font color="green"><u>AAAAGTCCAGTGTC<br></u></font><font color="red">GGCCGGGGGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAGTCCAGTGTC</u></font>attctacccacacttgaatcccagctctgcccctcactcaccatgtgaccagagtgaccttgaacaaattagctaactgccccgga<br>ccgcagtttctccatctgcaaaataaggatgatataagcatctacccaatgggtgttctgtgaggactgagttaatgtgcaggaagcataagaacggtat<br>ctggcacataggaaatacgcaagttagcaatttattatgataactctgcaatcttttcagccactctttaaggttcctggtcatccattctgggcacagt<br>gtgacatttacctgaacagagaggagaatggcactagaagatgagggagatttggtgcctaaaaattactacaaacaggcagggcgcagtggctcacgca<br>	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	377	63	NA	downstream:TRIM16:NM:006470
0	chr1	70718794	70719108	1000977	0	-	pAlu1-70330824; Yc1RG100; RIP_Alu_chr1_070_02	ACTTCCATGAGCTAGTGGCTGTA	GATCTCTAAACGATAAAGGCTCAC	SINE	Alu	Yc1	tttagaaaggcagcaaaaattatattttggcttttactctagatgcttagcatagttaaggcgacagttcaagcatattaagtgaaggtagttaaaatgt<br>aagaacaaccatcacaatctcttgcaacctaaatacactgtttaatgcttacatggaacaaaaccagtgtttttaattgacattttacacacacacacac<br>acacacacacacacatacacagaattttttaaaaaatcaaaggcaatcattctaaacgtactatggtagcatgttaaaaatgtaaataccaacgcataat<br>tttaaagaacacctcaaatgttctataattttatctttaaaaatttaaaggtagtatagatctctaaacgataaaggctcactt<font color="green"><u>AAGAAAACATAACCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGA<br>GAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAACATAACCAT</u></font>aataccactatcacaaaaaaaattaaaaacaatgtctttattcaatcatgatttgttttttaagtctcc<br>actctcttatacagccactagctcatggaagtgcccaatcactgtgtcccaaactactggactttcagaagttttcatgttgaggaggtaacagtcagtc<br>tctcctcttctctgacaagttctccaatctgttcaaacctcagttcagtattacctgctctataaagacttccttaattctcccaaacgcagttagtcat<br>ctcttcttgagggccttcatgatacatcattcatatctctagcatgtatctaaatatttggtattataattattcatttgattgtctttgtccccaaatt<br>taggcatgcctttaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	474	143	NA	intergenic
0	chr16	816643	816958	1000978	0	-	Yc1RG123; RIP_Alu_chr16_000_01	CACACACACACACAAAATTAGCC	GTGAGTCTTGAAACGGCTTTTAC	SINE	Alu	Yc1	gaggtgcttcagaaaacagacgcgaagccaggtctgaggcctggaagcgacggggtcaggcaggtggggagagcaccaggtctgaggcctggaagcgacc<br>tcaggaagtcacccggaaggcaggtggggagaagtcttcacacctggcctgagagccacatcctcagtgtttatgagcagaggtggagccagggccaggt<br>ctcccaaaaccacctcacacacgtgcacaggtacacgtgctaccacgcacagacacacgtggacacgcacagacacacagagacacgtgtgcgcaccctc<br>cgctccccgaaggcacagccgctcctcagagaacctccctcctcggcctggtgagtcttgaaacggcttttacattttttagttt<font color="green"><u>AAAACTCACATTTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>CAAAACAAAAAAAAAA</font><font color="green"><u>AAAACTCACATTTCC</u></font>ccgaccctcttattctttttgtgagacggagtctcgctctgtcgcccaggctggagtgtagtggttgat<br>tttggctccctacaacctctgcttcccgggttaagcaattctcctgcctcagcctcccaagcagctgggactacaggtgccaccaccacgcccggctaat<br>tttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttactagagatggggtttccccacgttggccagggtggcctcaaactcctgacctca<br>ggtgatctacctgcctcagcctcccaaagtgctgggattacaggcgtgagccactgctcccgggccgacatctgtttttaaaattcaccatccacaggca<br>cagtggcgaccacagc	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	563	234	NA	intergenic
0	chr9	3770633	3770942	1000979	0	+	Yc1RG132; pAlu9-3770534; RIP_Alu_chr9_003_02	TAAAACCTCTAAACCCAGCCTCT	AAAATCAGGTACTCTGCTACTTGC	SINE	Alu	Yc1	tttgcaattggagttagggtcagatagttgagggtttctttcgttctttctttctctcttttgagatggagtctctctcggtcacccaggctggagtgca<br>gtggcgcgatctcggctcactgcaagctccacctcccaggttcatgccattctcctgcctcagcctcccgggtagctgggactacaggcacccgccacca<br>tgcccagctaatttttgtatttttagtagagacggggcttcaccgggttagccaggatggtctcgatctcctgaccttgtgatccgcccgcctcggcctc<br>ccaaagtgctgggattacagacgtgagccaccgcgcctggccgaggttttaaaacctctaaacccagcctctttcagctactat<font color="green"><u>AAAGATATAAAAAATG<br></u></font><font color="red">ATGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAGATATAAAAAATG</u></font>tcttgtaccaattagattgtgttcagctgcaagtagcagagtacctgatttttaatgtcttaagttgcaattat<br>tttaaattttaatggataatctggaagtaggcattccaagtttgctttggaaattccatggtattataaaatatccagactctttagaatcttgagcttt<br>gtcaagggcagtatctctccttatgatcagaaaacatctgccagatcttcaagaaactcaatctcatatgacagcatcccaagtagaaagctggaggcag<br>ctacagagaaagtctttttcttcacatgcctctttgttattaggaaggaatgaaaactttttcccagaagccccaagaagacttttccctttatcacctt<br>agatgaattt	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	429	103	NA	intergenic
0	chr12	26402305	26402619	1000980	0	+	pAlu12-26411204; Yc1RG142; RIP_Alu_chr12_026_01	GCAGAAAAGATTTATCTGGGGTCT	ACTTTTCATGCTCAAGGCTCA	SINE	Alu	Yc1	gcactaagcctgagtgggcagtgccaaaattgagttgcagtgcacccagttgggaatgaaactaaatagctggtgtcagaccaggcacccaccctacaca<br>ccacctctggttgtggcccatgtggccatcagctgctgcccatggccagaggggaagggtgaccttggtggcaaaggtgaggaagctgcagggcggctag<br>ctcgggttgctgggtttacatttgctaactgttgctgctcagagacctataaatagtggacatttggttgaactattacaaagagagctacagaagctag<br>aatacacccagaaacctgcagctatgtacatatttaggatatgatcatgcaaggcagaaaagatttatctggggtctatggat<font color="green"><u>AAAGAATAAAGTCGTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGTCCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAATAAAGTCGTTC</u></font>ttgttttcccttgagccttgagcatgaaaagtgtgctgctggactgtgatcttacatacattctctct<br>ttatttcttacccattctgcctgaagagctggcaacaatttgaaatccatcatcccggctgtgttttgtggattaaactacttattctcatatgttctac<br>ccatttccttgtcaggagtgaattctgtgtattacaaataattgatgatgttgggcacatctcagaacaaaaaaaaaaggcactgatatgtttttaatat<br>tttcctggcataaattcttaactcctttcctagcccagggggccttaagtgatccagtctctgtccccctcccctcccccatctgtggctgccacctgcc<br>accctcactgactct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	411	79	NA	intron:ITPR2:NM:002223:55/57
0	chr2	81607124	81607420	1000981	0	+	Yc1RG179; RIP_Alu_chr2_081_01	ACTGCTGTGAAATAAGTGGTGCT	GCCAATGAGTGAGATGCAATAA	SINE	Alu	Yc1	taaatctctctcatttggttcaatggccaaagcctaaatcaattaagagaaatttaggtgtataagtcatcctaaggtatagctgtacttaagtcatcag<br>ttagagatgaggaaactgaggctccaaaaggttaaatgacttaattgcaatctaagcagagttggttcatggtataggcaggcctagaactcaaatctgc<br>tgattttcagttctgttttcttagaaacaatactacctcctgtgtcctgattagaaaagcataagtcacgctccaaagtgaccctctaacatgacaaagc<br>ttacaataatctgcttagactgctgtgaaataagtggtgctaaaagatccgtcaatgggatgaaataaattataacataaactttaaaaaat<font color="green"><u>AACTTGGC<br></u></font><font color="red">AGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAC<br>TTGGC</u></font>ctgcttggatttttgtttaatattttaaataactacttcaaaatagccctttcaaaggagagcacttttttttcctagaaaaggaacccattaat<br>gatttcgaaaaaattaatttattgcatctcactcattggccccaaagaagactaaggagattagatttagcatttggaggagtggaatcaagaaaagaca<br>aagaatatgaaacattgttgaagaagagcaaatatttcactggtagcaaaggactgtgacagttctacctatgtgataaatagacccaatattcttattt<br>ttccccatgttttaaatttaactaaacaccaatattcttgttttccagtaatgttaatattaatatcttgaatatcttaaaaattatttcatgaatc	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	522	217	NA	intergenic
0	chr10	61035501	61035806	1000982	0	-	Yc1RG214; RIP_Alu_chr10_061_01	GAGGGAGAGCATTAGGACGATAC	TCACTCCCAATCTTTCAACTCTAAG	SINE	Alu	Yc1	tatacatccgatttgttgttactaaatttttcctttaattttacatcaaatgactttgtagcatactttcagttacattctcatatagaatgtcagagat<br>ttgcgtactgaaagtgtcgaatctttatcctcaatatccaaagtagttttagcaaaagctttacacacacacacacacacacacacatgcacagcagaaa<br>gaaatatttatgtgaaactaagacaggaacagaaaaccaaacactgcatattgtcactcataagtggaagttgaacaatgagaacacatggacacaggga<br>ggggaacatcacacactggggtctgttggggggtgtggggcaaggggagggagagcattaggacgatacctaatgcatgtggggctt<font color="green"><u>AAAACTTGGATGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAACTTGGATGA</u></font>caggttgatcggtgcagcaaaccactatggcacatgtatacctatgtaacaaacctgcacgttctgcccatgtatcccagg<br>gcttaaagtaaaataacaaaatacatatgtatgtgaataaaaacctgctttttcaagtgcttcatctgtactttacttagagttgaaagattgggagtga<br>atgattgtatatagcagcccttctaaagggagtcacatttttcaccacattttagattgcagaccctcagaattatgaaatttagctttcttttcagagt<br>agtggatggaaagactataagactgagggcttaatttcaaattccaatgttaacacttattagctgtgtgttcttgaatgaattacatattctccttgcc<br>actcaa	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	58	554	235	NA	intergenic
0	chr21	29185638	29185974	1000983	0	+	Yc1RG231; RIP_Alu_chr21_029_02	GGGGTTAAGGAGGAGTGAGAGAT	CCAAATAAGGACAAAAGAAGTTT	SINE	Alu	Yc1	atagaggtagtaaaaagaacagtacttgccaggggttaaggaggagtgagagataagtagatggaacacagaggattttttagaacagtgaaactattgt<br>ttatgatactataattgtggatacatgtcattatacatttgtccaaagccatagaatatacaacatcaagaatgaactctaatgtaagctatggatttgg<br>ggtcataaatgtgtataaatgtaggtttgttgattgtaacaaatgtaccactctcttgtatgaggctgatagtcggggaggctatgtgtgtgtgtcaggg<br>ggtgcagagtatagatgggaacaccctctactttgtactcaattttgctgtgaacctaaaacttctctgaaagataaattttattttgaaaaaca<font color="green"><u>CTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCGCGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTATTCCCAGCTACTCGGGAGGCTGAGGCAGGAAAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAGAATGAACTCTAATGTAAG</font><font color="green"><u>CTATG</u></font>gatttggggtcataaatgtgtataaatgtaggtttgttgattgtaacaaatgtaccac<br>tctcttgtatgaggctgatagtcggggaggctatgtgtgtgtgtcagggggtgcagagtatagatgggaacaccctctactttgtactcaattttgctgt<br>gaacctaaaacttctctgaaagataaattttattttgaaaaacactatgatacactaaaacttcttttgtccttatttggtaatacttagaaatataatt<br>ttattaagattatatttaaaagtagagtcaaaagatatgcatgttttagtgaaatatcttctattgttattactatcatcatagttattattatttgact<br>tagaaatcctcagtagacattatgaaattagagatca	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	949	409	NA	intergenic
0	chr13	41844065	41844378	1000984	0	-	pAlu13-41882603; Yc1RG283; RIP_Alu_chr13_041_02	TCCCCCTGTTCTATCCTCTACTT	AACCCAAAAGATAATGGTGTCTG	SINE	Alu	Yc1	ctctatttatgtggttacatctatcaatatttagcggttagaaattaaaactaaaagattctttaatatgtagtaacttattttaaaataagaataagcc<br>aggggtggtggctcacacctgcaatcccagcactttgggaagccgaggcaagtggatcacttgaggtcaggagttcgagaccagcatggtcaacatggtg<br>aaacgccatgtgtactaaaaacacacaaaaaattagccgggtatgatctcagctactcaggaggctgaggcaggaggatcacttgaacccaggaggtgga<br>ggttgcagtgagccaagatggcaccactgcactccaacctgggcaacagagcaagattacatctcaaaaaaataaaacaaaat<font color="green"><u>AAGAATAAACCCATTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAAACCCATTGC</u></font>ctgttaacataaataacatattcttataaaaaaaagaactatatcttttaaaacaaaaaaaaacagtga<br>gactgatgtggaagctcaataaattactctcatagaagtagaggatagaacagggggatcgagaggctggggaggaaggagggagaggagatgacagatt<br>ggttagtggatacaggatcatggctggataggagaaatgagctctagtgttctttagcgctgtaaggtgactagttaacaataatttgttctatgtgttc<br>aaatagctagaatgtttcagcacaaagaaatgatcaatgtttgaggtgatggatatgctaattactttgatttgatcattacacatggcataaaggtatt<br>gaaatatcacactg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	58	963	632	NA	intergenic
0	chr6	7662383	7662701	1000985	0	+	Yc1RG328; pAlu6-7707282; RIP_Alu_chr6_007_01	GTGGCACAACATTTTCAAGAACT	TTCTGCCCTTTAAATTCTTCCTC	SINE	Alu	Yc1	tgaaaactccacattttttgaaaaacacacacgtacatgttcaggaagctgagcaaatcctgaacgaaataaacccaaagaaatccacgtgaagacacat<br>cataattaaacttctgggaactaaaagtaaagaagtcttgaaagcagccagggagaaacaattcgttacttcctagggaaaaacaattagaatgatggta<br>gatttctcatctgaaaccatggcggccaaacaaagtggcacaacattttcaagaactgaaagaaaagaactgtcaactgcaaattctatatccagtgaag<br>ctatccttcaagaatgaaggagaaataagctaattcttagacaaaagaaaactaaaagactttgttgctggtgtacctaccctt<font color="green"><u>AAAGAATGGCTAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAATGGCTAAAGA</u></font>gaattcttcatccagaaagaaaatgataaaagaaagactcttggagcatcaggacggaaggagga<br>agaatttaaagggcagaaatattggtacatacaatcgaatatgaatttcctcttgagttttagaaatcatatttaggccaggcatgatggctcatgtctg<br>taatcccagtactttaggaagccaagtttgggcaaatcacctgagcccaggagtttgaaaccagcctgggcaacatggcaaaaccccatctctacaacaa<br>atacaaaaattagccaggtgtggtggtgcatgcctatagtctcagctactagggaggctgaggtgggaggatagcttgagcctgggaggtcgaggctgca<br>gtgagccatgagcatgcca	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	58	584	249	NA	intergenic
0	chr10	32745744	32746070	1000986	0	+	pAlu10-32855876; Yc1RG344; RIP_Alu_chr10_032_01	GGGACTAAATGCCCACTTACTTT	CTGCAGAAGCATTGACTAAACCT	SINE	Alu	Yc1	ctccataaatgctagattaactttgtttttaattttcttctcaggattcagtatagttagaaagaaaagtgaaaataatgtagaaagggtaagaagagta<br>tttcttaccttaatttgccaaactttcattataataaacctcttattttccagtattagacaattattgccctctgctacttatcaactgtgaactctta<br>agcaacggatttgtcctttttatacctaaagtttttgattttcaaaatcaggattagaatatctactttcaggtttatgatgagaatttactacgataat<br>ctatgtaaaaggacctcacacagtgatgagcctatattgggactaaatgcccacttactttattttttcttccaactacgtacttaaaa<font color="green"><u>ATATTCTATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAATATATATATATATATAT</font><font color="green"><u>ATATTCTATTC</u></font>aacatatttttatttttcaggtttagtcaatgcttctgcagatgcttttcggaaagtctggt<br>tactggtgaacttacttttttcattaccttagatattttttaaaattacggtaaaatatgcaaacatgaaatttactatcttaactatttgtaagtgtac<br>agttcaatattattaagtatattcacatcgttgtgcaaccaatttgcagaactttttcatcttgcaaaatcgaggctctatacccattaaataagtcccc<br>attcctccctaccctcagctttattttctctttctatgaaattgattactctagatccttatgtaagcagaatcatatagtatttgtctttttgtgactg<br>gcttatttcacttggtgtaatgtcctc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr2	207598912	207599227	1000987	0	+	Yc1NBC31; RIP_Alu_chr2_207_01	TTCTGTAAAAGCCTGTTAGGTCCA	CAGCATTTCACTGTCAGCATTGG	SINE	Alu	Yc1	agagattcacctcacctgtaaagaacacacacaaactgaaagcgaagggatggaaaagatagtacacacaaatggaaactaaaagtgagcaaaagtagcc<br>atacttttatcagataaaatagacttgaaattataaaacccccaaagagaccaagaaaatcattacataatgacaaaggaatcaactcaggaagagaata<br>taacaattataaatatatatgcatccaacaccagcacacacagatacataaaacaaatattattagagctaaagggagagatagaccttaaaaaaaataa<br>ggtggaatttcaactctcagcatttcactgtcagcattggacagatcgtctacacagaaaatcaacaaagaaactttggactt<font color="green"><u>AAACAGCACTATAGTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAACAAAAA<br>CAACAACAACAAAAAA</font><font color="green"><u>AAACAGCACTATAGTCC</u></font>aagtggacctaacaggcttttacagaatattttatacaatagtttcagaatgcacattcttctcact<br>ggtacatgaaacactaagatagaccatatgttaggccataaaatcagtctcaacaaatttttagaaattgaaatcatatcatgcatcttttcaggtcaca<br>atggaatgaaaccagaagtgaataacagaaggaactttggaaactgtaccaccagatgtaaattaaacaacctactcctgaacagccaatgaagaaatta<br>aaggtcaatgaagaaattaaagatactacaaaatgtattgaaacaagtgaaaatagaaatacaacataccaaaacctatgaaatacagcaaaagcagtac<br>tgagagggaagtttat	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	443	110	NA	intergenic
0	chr12	56744491	56744492	1000988	0	+	Ya5HS4.32; RIP_Alu_chr12_056_01	GTTTATTGGGCTAACCTGGG	TGACCAGCTAACTTCTACTTTAACC	SINE	Alu	Ya5	gggcccaaatttcccttcagaatctccaccacggtactcatctatattttcagtccttaattaaatctggtttctgctgtgcttttcattcaccatttag<br>taaaaatgaaaacctttcttaataaatttcagagatgggagattaaattacttacataaatgctaatatggcaatggaattttttactaaattttttctt<br>gtaaatacatgatatggcatcaatataaatgagtatgaatgagtttattgggctaacctgggtacctatctgcatttataataccatttttatgagcaaa<br>tgcattgtatcttccagcaaacagacttgcaagctgatttctggaaatctagttttcgaaagttgaacactgtgtaattcaat<font color="green"><u>AAAAATATTCTAATGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>ATATTCTAATGAG</u></font>aataaaagctagacagaggcataataatgcttttcctaatttttctacctttcttttagttacctttttagttacatgaatagtcta<br>cagcaaaatagctaagtgaggttaaagtagaagttagctggtcattccggcataagtgaaaatgtagaacttagagtgtacctttgcttaaagtcagttt<br>tctttcaggaattcattttaatattgtgatagtagagaccatgcgaaaaaatatgaaaaaactcaaacaagaaaataatctttaaagaaaatttgagaac<br>cttcatttccaaacttttataagtagtttttaccaaagacatgctcattaagctttgccaggccactgtcagtagtggatacatgattaaatccac	Other	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr14	62957242	62957555	1000989	0	+	Ya5NBC208; Ya5ac2368; RIP_Alu_chr14_062_01	AATACCTTGTACATCTTCACCCCTA	TCTCTCTGCTGCACAGTTTGTT	SINE	Alu	Ya5	caatctgggatatacctatgaaaagcacaaatagttttacaagtttcttagattgcagacaatatgtctgggaccttaaaaaaaaaatcaaacatctaag<br>atagtaaatcaattaccgtgttttaactaatttacccagtcttagcattggaggcaggaatacatatgcataacacgcctgagtaagagctgagaaaaca<br>gagcccccaaaagctctctacgtaacaacgggaaatagcacacgtgtgtacttgcagaaactttgagttgtcaaagcaggacagacagacttgcaaattt<br>gtgtcagaaattctgaagtaggggggaaaaactcttagaatatctctaggccttctctctctgctgcacagtttgtttgctcttc<font color="green"><u>AAAAAGTCAACCTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGTCAACCTGA</u></font>accatgaatacatttctacgaaaatgcagcagcttctgcctaggggtgaagatgtacaaggtattattcat<br>tttcttccaccccttcccccttgctatttgtcgagcaacctaaggatattctgactcaatggaagggtgactttggggttcaacatgtacaaatttcctt<br>gctctattcttttgagaaattttggccttcagagaaggcagcacaaggaaggaacgagctggaaaattaccagtatgtattatacaagttaatacaatac<br>agatggctctaatgctggaaacagagatgcagtgatgcccctgatccatcctggcacataagtgtgattggaaaacatggccttctcagtgcaagagaac<br>agaattggccttta	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID:11042148</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	50	441	115	NA	intron:PPP2R5E:NM:006246:4/14
0	chr16	19137939	19138265	1000990	0	+	Yb9NBC30; Yb8NBC243; RIP_Alu_chr16_019_02	GAACCCCATCCATTCTCTTACA	GTGGCAAAATATTGGCGACT	SINE	Alu	Yb8	gtgaagactgccaggattgggcagagcccctgggatcaaccactgggcagcttgccttggttcctgtaggcgtctctagaatccattcattctgcccaca<br>ctggccttctctttgttcctttgaacacactgactgagtgatgccgggtttattcctccctccctccatcccagaccttgcacatgttgttccctctgcc<br>ccatgagtccctatccctctttcctccctcattcctcttcaaacctcgcctctcagagaaaccctaccccatccaccgactgaaagggcagctcccacgc<br>gaaccccatccattctcttacactgcctaatttgtcttgttttcctttttcatatttattttatgtttttaatgggaatatttcccacat<font color="green"><u>AAAATAATAA<br></u></font><font color="red">AACAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAA<br>CAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATAATAA</u></font>taataataataataaaacaaacacccatgtgtccatctcccagatgtcgtaagtcgccaatat<br>tttgccacatttgcttacttcaaatcactccctttcaatcaactgcattgaggcggaacttactgtttgttgatttttggcaaatgcacacgtaactgct<br>accacaatcaagatatagcatattgctatcacccaagaaatgttcttcctttctctcactctgctatatttttcttcctaatacttagcattacctgaaa<br>tcatctcatttatgtattttttaaaatctgtgtgctatccatcccccccacaggagtgtatgttccataaagtcagggacggttctcactggtgtatcct<br>tagtcctggtacatagtaaactgtttt	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	508	156	NA	intron:SYT17:NM:016524:5/8
0	chr1	215091491	215091492	1000991	0	+	Ya5HS2.43; RIP_Alu_chr1_213_01	ACTCCCCACCAGGTAATGGT	AGGGCCTTCATCCAGTTTGT	SINE	Alu	Ya5	ttttctgaacccttagaatcctagcaggactggaagaaaggttaaagatctatgactaattagaaagataattttttgtaaagaaagaataactacactt<br>ctcagagtgcccactcattactaaaagctgtgtgctttgagtcagcagacctgaaaccaacaagatgcatgtgctgcttttcttgtttcggcatctaagt<br>tacttttgaaacacagtagtgtaggagagaactacttgttatggactaaatgtgtgtattcctccaaaattcacaagttgaaatcctccccactccccac<br>caggtaatggtattagcaggtgaggcctttgggtggtaattaggtcatgagagtggagccctcatggatgagattagtgcccttat<font color="green"><u>AAAAAGAGGCCAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAAGAGGCCAGA</u></font>gagcgctcttgccctctttccactgtatgaggatacagggagaagttgacagtctacaaactggatgaaggccctcgccagaacctga<br>tcatgctgacaccctgatctcagactttcagcctccagaactgtaagaaattaaatttctgttgtttataagccacacagtctatggtgcttcattacag<br>caggccgaactaagacactactgttggctgctaatttgcagaaatgtgcatctctcattgacccggctaaggatccttttattttttcctgaacattata<br>gaaataaacaagaccaatcaaacaaatattaggaaactggtatttaggaagagtagaaaaatcacccaagtggggccacactgatatcaactttacaa	Other	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:ESRRG:NM:206594:3/9
0	chr1	169527860	169528165	1000992	0	+	Ya5NBC237; Ya5NBC220; Ya5NBC159; RIP_Alu_chr1_167_01	GAGGGTCTTTCCTAGGTTTTGTTT	ATGTCAGGTGTCCCTTATGGAGTAT	SINE	Alu	Ya5	tttccaccaggcctgaggactgggggtggtaggcacaatggaaatgttgaaatatgggccaaatttcacaaacatcttgaataacctggccggtaaagtg<br>agctcccctgtcactgtgaagttcacaggggactccccacagtgggataattttttgtagaagaattttccaactgccatggctgttgcttgcctgcagg<br>gaaaagcttcaacccaacgggaaaacatgcagaccattacaaaaacatacttaacaaccttgagatgatggcagccagataaaatcaagctgccatacct<br>caaagggtccagccggaaggaaaaaatgaccgtgggccccatggagggtctttcctaggttttgtttgggacaaatagcacatt<font color="green"><u>AAGAGTAACCTTTTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAACTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCCTCCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAGTAACCTTTTTG</u></font>tgccactgtgaaggatggtttccagtaatattgtttacaccagggtattattttatctagattccaatgggttagatt<br>atgaacatactccataagggacacctgacatcccattggaataatgggtttattattaggtccacatcatatttcactttcaagagacaagtacctccct<br>gcctgtttccaagtagatttctcttctgtaggagctatgctctgggtttctttcaacatgtttttaagtatttggggttttatggccatttcccagattg<br>ggactggtggctcggatgctgctcttttagctgtagcttcagccagttggttaccctaactttctatggtgtctaattttgaatgacctgggattttcat<br>agttgc	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID:11042148</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	410	88	NA	intergenic
0	chr20	24217611	24217829	1000993	0	-	Ya5NBC335; RIP_Alu_chr20_024_01	TGGGTACTTTGGCCTTAGAGAA	TTCACAGCATTAGAGAGAGTTGATG	SINE	Alu	Ya5	taagttcctttaaaagacattccaggcatccagctagccctgagaagtaaacgagtgacttactaagcaagaaggtaatcatagctaaaaaccatagcca<br>aggaagtcagtcatgagatgttgggtttcctaaaatttcatgctttgtgtttatttcataaaccgtagtcaaaatttaggggcctatgatctaaatgaaa<br>gtgaaaacctgaaccaaataaagtgactgattctttgtatctgagcatactgaatcatgcctataaggtaagtttagaaagtaaatactgtaagagatgt<br>ggagagcactccaaataaataaataaataaacaaaactaaaaccttgtttactgggtactttggccttagagaaaaagatgactat<font color="green"><u>GAAAATACAGGATA<br></u></font><font color="red">CCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGAAGGCT<br>GAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATACAGGATA</u></font>aaaatgtcattcacaattattcatccagaaaagatttaattccaatctaaactatcatcaactctct<br>ctaatgctgtgaaacagagtcaataactgcagtttttctttgttttttttttttgtttttttttcaacttttattttaagttcaggggtatatgtgcagt<br>atgtgcaggcttgttcataggtaaatgtgtgccgtggtggtttgctgcacagatcatcccatcaactaaatattaagcatagcagccattagctattctt<br>cttgatgctctccctcgctcttcacacaacaggcctcagtgtgtgttgttccccacactgtgtccatgcgttctcatcattcagctcctacctataagtg<br>aaaacacgtggtgtttggt	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chr2	189562203	189562204	1000994	0	+	Yb8COL3A1; RIP_Alu_chr2_189_02	ACCTGCAGCACCAGGAGGTCCTGGAGGGCC	GAGTCCTTTAGAAGGATATGCTCTG	SINE	Alu	Yb8	taataaaggaattccctcatcattagccatcaaaatagtccacttcccagagctgataaaaattctgtatatattaaatatagatttcatttttctgtaa<br>acactcagttcactcatatctaatctactgataaatatagttatatatttacatatgtaaatatacatatacatatatcttagacagtagaaataaacat<br>aatcttagagagtcctttagaaggatatgctctgtaaataagcaagtaaaatagtttaaatacaacatttcatgacatttagaaatacctttatatttag<br>atatatttaatattcctaaacgtgtagaaatgcatttggatttataaatacacatacgtaatatatgatgcttttaatttttattaacagtaagttgata<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>taatagaggtataatattaactcagtaagtatcattttcattatcagaaacattaaaagtattttctaaaaggaggttcc<br>ttccaggaatacatacactgtgtaataataaattgtaacagaaaaatttacaaatctattcattttttatttccttattttcagggccctccaggacctc<br>ctggtgctataggtccatctggtcctgctggaaaagatgtaagtttttaaaacttaaataagaatacagcaaaatttaacttggtgtattctaaacagta<br>tatgctttatgtcagaatcccagaagaaaaaaaaatgttattcaaaatattgttgtcttaacaacattttagttaatactaatttttgagtagctataca<br>gtatttgcgtttctatatat	Other	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	precise insertion position unknown TSD unavailable	NA	NA	NA	NA	intron:COL3A1:NM:000090:7/51
0	chr3	176098316	176098628	1000995	0	+	Ya5HS4.75; RIP_Alu_chr3_176_01	CAGCATTACATACAATAGTTAGGAGC	GTGATATTTGTCTTTCTGTACCTGG	SINE	Alu	Ya5	ttgatcattagagaggtgaaaacaaacatcttgaaatcaaaactagagatataatttcacctcagttaaaatggattatatccaaaagacaggcaataac<br>aaatgctggcaaggatgtggagaaacaggaacccttgtacattgttggtgggaatataaattagtacaatcactatggagaacagtttggaggttcctca<br>gaaaactagaaatatagttaccgtatgatctggcagtctcactgctgggtatatacccaaaataaaggaaatcagtgtatgaaagatatatctgcactcc<br>tataattgtcacagcattacatacaatagttaggagcaacctaagtgtccatcaacagatgattggataaagaaaatgtggagtcctattcagccat<font color="green"><u>AAA<br>AAAAGAATGAGATC</u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAT<br>CCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGG<br>CAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AAAAAAAGAATGAGATC</u></font>ttatcatttgcaataacatgggcagaattggagattattatgttaagtgaaataat<br>ccaggtacagaaagacaaatatcacatgttctcacttctttgtgtgacctaaaaatcataataattgtactcatgatatagagagtagaaggttggttac<br>cagagattgggaagggtagaggggggttaggaggagggtagatagataatgcgataataatagataagtaataataaataaattaataataaatagaatg<br>aataagactgactatttgatagcacaacagggtgactatagtcaataataacttaatggtatgttttaaaataatgtgaagaatataattcgattgtttg<br>taactcaaaggataaatgcttgaggag	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:NAALADL2:NM:207015:1/14
0	chr4	144792752	144793064	1000996	0	-	Yb9NBC10; RIP_Alu_chr4_144_01	GTTTTCCTGGTGTGCCCTAAATA	TTTACCTAACTCACAAGACCCAAAG	SINE	Alu	Yb9	acctcaggagttcaagactagcctggccaacatggcaaaaccccatctctataaaaaatacaaaaattagctgggcatggaggcatgcaactgtaatccc<br>agctactcagaggctgaggcaggagaatggtttaagcccaagaggtggaggtggcagtgagctgagatcgcactgtactccagcctgagcaacagagcca<br>gactctgtctgaagaaaacagaaagaggaaaagcaggaaagcatgcagtcttcacctcaatttacctaactcacaagacccaaagggactgaatgggatt<br>ttttttctatatttcatttcatttgccactttcatttctattgctcgttaaggcttttaaaactctttatgtattactcttttttt<font color="green"><u>AAGAAAGGAAAAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGGAAAAAG</u></font>accatttgaatgaatagttatttttaaatttatatatttagggcacaccaggaaaaccaaatgaacagggaag<br>aaactggcagcgtgtaacattaagcacaaaatggtaagatgttatacacagctagggacttgtgcagaaatacaatacacagaaaaatcttttgaactat<br>tagttcttcagatattacaaaaaatgcagctccaagaatgagtccattgaaaagaaaataatagtaatgctgaattaaagtacactattccattcagcac<br>ataactgattattttatatgaaagtgacctatgtcatctttacttccttctctccttccatctgttaagaagtataaatgacttaagggtgggctttatt<br>attttctcacagg	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	524	197	NA	intergenic
0	chr5	95019977	95019978	1000997	0	-	Ya5NBC27;1104685725664; RIP_Alu_chr5_095_02	CTGAATACAGGTATCACTGAACAGAAC;TTCTGAATTGCTCTGCTTTCTT	ACAGTGTAAAGTCTAACCTACCAGAGGAT;CCAGAGGATGGATTTTCTTGTT	SINE	Alu	Ya5	tgttaatgctgtgctgaagaaggtaaagaacatcttccaggaagaagaatccataaggcaaaacagagaggagagtgaaaattgtagaaaagccttttct<br>gagcctgtgctttcggagcctatgtttgctgaaggtgaaatcaaagcaaaaccttataggtcattgccggagaagccagacatttcagattaccccaagc<br>ttcttgctaataagcagagtaataacatccaagttttacattctgtgtttgaccaatcagctgaaatgaacgagcaaatctgaatacaggtatcactgaa<br>cagaacttaagagttatctatttaatggcacatttcatctgacaaaactcagagtctagtttacatattctgaattgctctgctttctt<font color="green"><u>AAAAAAAAGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAATACAAAAAAAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGA<br>GGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAGAG</u></font>aagggggctactattaaaatgtcattttctagtatttacatgatagagtaaataaaatgaatattgatgtggaa<br>tatatgtactgactacatacttttaatgaacaagaaaatccatcctctggtaggttagactttacactgtggtttataatataagcatatttataataca<br>ttaatgtttttattaaagacttgttttgagtgtctaattctttacttgggaggaaaaaaagccccatcaagatggtgcatatcaaaataaaagaatattt<br>attttttatatgcagactggagagtttgagtctgcctattattattttgtaaatcacttgcaaagttatgaaggatttgcaattcacagatgtcataaat<br>ttataaaacaaaata	Other;Venter	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA;NA	55;60	591;483	265;158	NA;NA	exon:3UTR:SPATA9:NM_031952
0	chr5	143333844	143334002	1000998	0	+	Yb8NBC547; pAlu5-143336706; RIP_Alu_chr5_143_01	GCCCATGCTCAGTCTAAACC	GATTGGAGCCCTTGTCTACG	SINE	Alu	Yb8	ctcctgtctcagccttccaagtagctgggactataggcacctgccactacgcctggctaattttttgtatttttattagagacgggggtttcaccacgtt<br>agccaggatggtcttgatttcctgacctcctgatccacccgcctctgcctcccaaagtgctgggattacaggcatgagccaccgcgcccagccaactgcc<br>agtctctttcaacttgataggtgacaaagtttggaagcaactttcttaattacatagactttacatatcttttgtaaaaatgctagacatgctgtgcttc<br>tactctgacagtcagtaaaacagtgctgattggagcccttgtctacgacaaaaaaataaatgttcctgcttcttcttagcaaat<font color="green"><u>AGAATCATGGCCTGGA<br></u></font><font color="red">CAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTC<br>TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAA</font><font color="green"><u>AGAATCATGGCCTGGA</u></font>aatcgagaaatttgcatttttagct<br>tctgctgtctcgccaaccatttgtgagacacagagtgaaccacagttgctctgggtcacagatttggcaaaaataaactgagaggtttagcctggatagt<br>ctcacggcagcacacatggtggtttagactgagcatgggctccgaagtcagacatagttggattctaatcccactcactctaccacatactagttacatt<br>accttggacaataaccatctatcttcaactttcatttcttcaccagtaaaatgaaaatgacatctattttacagcatttttgtatggattaaatgagata<br>atgtacataaaagcacttagcacagttcttggcaaattgtaagaggtcaatctagttaa	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	413	238	NA	intergenic
0	chr7	80639636	80639961	1000999	0	+	pAlu7-80399849; Yb9NBC29; Yb8NBC207; RIP_Alu_chr7_080_02	GTAATATGAGGTGATGGGGGTTACT	GGTGAAAGAAGAACCCCTAAGTTAT	SINE	Alu	Yb8	aagtctggtaaaatcaacagaggcactcagaatgtctccaaaatcatttccatgatgccagaaactttaaatgctacagaaacaagctacagcgatacat<br>ttaaatgttcttctttgtagggcttgagctgtatctaaacttaagttagagctcaaccaacatagaatctagttcagtaatattctacaacgtgagataa<br>ccatattgatatttgatctaaaatgagattgcagaggaaacacattttaatacctgaggtgtgtgcttaatcttcttgatgtacattaaaagctcagtat<br>gtgagagtaatatgaggtgatgggggttactcttaaagagattactaataatgtttatttggaaaaagatgaagattttagaggctattt<font color="green"><u>AAGAAACTGG<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACTGG</u></font>ttctgggaaaaccagccataacttaggggttcttctttcacccaatcccattggaattctgctt<br>tgctatagaaacatgctcaaaccaaggcaagcagcacacattacatgaacaaacaacacaacaatgaaaagcagatccttgagaccctcccaagaagacc<br>aagagctctctctttaaaactttgtaaaatacctaggttctctagtcttcctgtgtgttatttcctaaccaattgcactatcaattcaaaaatggaacaa<br>aggatattctatgtatcagaaccttttttcctatacattaagaagaacttttcccacatgaataggtaatcacaatcttaagccagaggatgaaacctat<br>gaattccttgtatcatatatatttta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	474	138	NA	intergenic
0	chr7	127553665	127553964	1001000	0	-	Yc1RG68; pAlu7-127306922; RIP_Alu_chr7_127_03	ATGGTGTCCACAAGAAACTGAG	GGAAGGCTCCATTATAGGTCTTG	SINE	Alu	Yc1	tggtctctcaaagtgttgcaatcatagttgtgagccactatgcctggccccaacttttaaattattacataatactcattttggataaacttccagttta<br>tacagaaaagagatgggaaagtcttaatctaattttctgataataggatcactgtgatcctgaaagtcgacatggacagcacaagagggaaaactacagc<br>cacttccacttatacacacaaatacagaattactaatcaatcaatgaccaagtagggttgttccagaagaatatgcaagaaaagagttgaataaatagaa<br>acgataccatgttcatggatgggaaggctccattataggtcttgtacattttttattaggttctttttcgagtttatattgctgtt<font color="green"><u>AAGATGCTGTGCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGATGCTGTGCCC</u></font>agtatatattgggtccaagaagataaaagccaaatactgacaaaagtagagaaaaaagaaagaagctcagtttcttgtggacacca<br>tggggtctctgcattagctctggtctgcatccctttggatttacctgttatgcaaaatttaaaatcctattatattaagtatctgtttgcctctgttact<br>aaaagctgatacaaagcccaataaaactttcaataagatttttcatgacacttgacacacaaattctgaaattcttactgaagaataacacaccgacatt<br>ccaggaagtgaaagagggaaattgggaaaaggaaggggcagtgcctatagcagaaaaactttcccagaaattcccccatagacttcttgctttttctagg<br>	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr9	89135847	89135848	1001001	0	+	Ya5HS4.65; RIP_Alu_chr9_087_01	TGAAGCCAATGGAAAGAGAG	ACAGGAGCATCTAAACCTTGG	SINE	Alu	Ya5	agaaaccaaaaacatacaacattggctttaagactgggtggggcaggcgggagccagaaaggtctcaaaaaaccactaaaggagactggaaggagagtga<br>ggaaattgttattggaggctgaagaaaaggcaactcatacaatatattggtagaacatttaacaacactgtcaaactatgaagccaatggaaagagagat<br>gaaccaaaaaaaaggactgctcagattgagagcagaatttagaaaacacgttgagaactcaggactcaacaaaagattctcaaaggaagaaatgtcctta<br>aggcaagtattaaacccaggttgctgcaagtaaaatatagtgtcagagaaaatgttcaaatcaaaagtgcaggcgtaagacctt<font color="green"><u>AGAAAGATTTGAGACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AGAAAGATTTGAGACA</u></font>gtgcctcaataaccttcttcatttccaagacagaagggcttccaagaatcttaagggatttgttctatagcatttttaat<br>ctcagtccaaggtttagatgctcctgtctcaaggagaattctgagtgtcgcatttatctaagggattggaattataatttgatgcacaggaaacctataa<br>ggtttttaaaggaattatattaacttggtctaaaagatacagagatggttcaaaatgaaaagaggtctctgggtccttaacctcttataaagagaaagga<br>gattgagactgtctcctactcagctgcaagcatagataatttcttatagaaaagaacaggtcactagagagctgagtcaagaaccacagagaaccatgaa<br>agag	Other	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr9	118516899	118517218	1001002	0	+	Ya5NBC239; RIP_Alu_chr9_116_01	CAGCTGAGAACTGTCACAAATAGAA	ATCAATGACTGACTTGTGCTGAGT	SINE	Alu	Ya5	actaacagtaataataatcattattggcttaattatgtctcatgataataatgaatgatgatcataatagcatttcctcagcatttgttatatgccaggt<br>gcagcagtaatcactttacaaacatcaattcatttaaatctcataacaatactgcaagataagcataattatacccatgttaaagataagagaattgagt<br>cccaggaacctaaaagacctgacctaagtcacacatctagagaatggaacagatgacacatagcttcttatgtatgttgccatttgttgaaacttacacc<br>tgtcgggaggagaatgcatcaatgactgacttgtgctgagttcctgctatgagccacgtaatcacatgatctcacatcatctgcat<font color="green"><u>AAGAATCATGTGAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATCATGTGAG</u></font>atctaaatgtttttccagctattcccctggtatctcccaaagtggccagttgttttcacttaattt<br>aaggcattggagattcagtcttttctatttgtgacagttctcagctgtggacagaggcaatggaagtgtctctaactacttgggagactgaggcccagtg<br>acattcaaaggtctaacaaagaagccaatagcattccctaggagcactgaggggatgcaggtactatattgctcctaactggtccaagagacttcgccat<br>tcctaaaggtgccaggccttcctacaaatctagctttgcattgttgtctccttgcgtggagtctccttcctccccaccttcccagttggcaaatgcctac<br>tcacccttaggttcctgttt	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID:11042148</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	531	198	NA	intron:ASTN2:NM:198187:16/23
0	chr5	91516544	91516886	1001003	0	+	Ya5-MLS04; RIP_Alu_chr5_091_01	GCCACATTGTAAGCAAGTAGCAC	CCTGTATATTAAGTGTGGGGTACTCA	SINE	Alu	Ya5	aagaattttgatcaaatgtactgaaatatgttggtctgaacaaggtaaaacctatttctttattgcaagacttctcagagactggataaacataaaatca<br>taagggcttagattgtttataccttagttacccctgtatattaagtgtggggtactcaataaatattgatttaataaatatcctaatgcaagctgtgatt<br>ctctagaatgagagtgaaaatatgctatagttcccaaatatatttggcccaggtccttttttttccccacagagcatcttgctgtacagaacacacgtta<br>ggaaatgctaatgtttggattattcctggaagagactattactaggaatccctttcccaaaaactttctctagagcaaatcgttaaaag<font color="green"><u>TAAAGTCTATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAATAA</font><font color="green"><u>TAAAGTCTATT</u></font>atcacaaaaattcaataagcactgacagaatgcctacagttccagt<br>tattgtggaaagtacaaaatattgggaatattaacatggttacaattaagtccttgcgtccagattttgccacagtgtgttgaaataatttgtgtttgac<br>tggcttattataatgtacactacagatataagtggtagttcaaagcaacaataaatagggaagaaggcaggggacacagtaaatagcatttgtaatacac<br>ctactctgagtcatgcactgtatatatatatatatatataaatttcacccacttcataggcctatgagtttagtaagcatcatgacctgctagcacagaa<br>atttagaggcaatatagtatattgcataagaacatggagtctg	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr4	178106327	178106628	1001004	0	+	pAlu4-178453682; Ya5-MLS05; RIP_Alu_chr4_178_03	TAACTGGCATACGGATTCTTTCTC	ACTACTTATACACACAAGAGAGCACATG	SINE	Alu	Ya5	ccttttttgtcccctttagtggcaacaatggttatttttgtttcctttaccctcaacaaggttattacttcatatgagctggggtaactgtaactctaaa<br>gtgtaatgtatgttataccagtacttacatttggcaaaatagaatccttaggaacataattcactctcaattaaactttcaacatataccacgaaactaa<br>gaagtcaaataaaattacgcatcttagcacctgcttagatgtttgctagaaaaatttagtttagatttgggagacaggtaaagtcagtcttgtctttaat<br>aatgaaatactcaatttgaaactggagatttagctcctggtatttgcagcttactatatggtaactggcatacggattctttctct<font color="green"><u>AAAGAACAGGATTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAGAACAGGATTA</u></font>acagtgaaggtctctgataattttgtggatagcaagtctcctcttattgtcatcatgttactaaagtaaccaagaaggatcagc<br>gaacatagtcttcctaagggtagaaaaggagttctatttttttatcaaaagaaacttggtacatctttaatgattgaaatatttattgattccaagaaac<br>tataaatgctcatttaaagctcaccgcaaatagttatttctaccccacatgtgctctcttgtgtgtataagtagtcacacacacaggcacgcagacacac<br>tcatggattttaactattagaatacaatgcctacaggactttctggtcagaccaaagtatgaaatgataaggatgtttctgaaaatttgaaattttacta<br>tt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr6	52912998	52912999	1001005	0	+	Ya5-MLS10; RIP_Alu_chr6_052_01	GTGCTTAGACCTCAGTTTATGGAGT	GCTATTTCTTTGCTCACACCCTTAC	SINE	Alu	Ya5	catgctggtgctgtgactggatcatcatgtttgtcatcacgcaacctgctgccattagagcagcactatcttcctggcaagttcaacatagtgggtatcg<br>ggggtggcttcctctgactcccaggctgcaggaacttcttaattgtagggatgttgctgattcttattttaaatgcctgaaataagaaagagtaaaatca<br>gggcctcaatagcagtcacaacctttaagaaaaatctcaactttgtcatgaatgaagggtgcttagacctcagtttatggagtacagtgtactgaatctg<br>cttaatccctcagcaagtgtttgctgggtatttctgggatggataataatacaactgctgacatgtttagcatgagttatattatctatt<font color="green"><u>AAAAAGTCAC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAGTCAC</u></font>aatcaggcagtgcatacccctaaaatattcatattcttttttttttttttgagatggagtctcactctgttgcccaggctagcatgcag<br>tggcacaatctcagctcactgcaacttccacctcctgagttcaagcaattctcccacctcagccttccaagtagctgggattacaggcatgcatcaccac<br>acctggctaatttttgtatttttagtagagacagggtctcaccatgttagccaagctagtcttgaactcctgacctctagtgatccacctgcctcagcct<br>cccaaaatgctaggattacaggcacgagccaccacatctggtcacattcatattcttgacctatcaattcttgttttaggaattattataaaggaataag<br>t	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr15	50312485	50312798	1001006	0	+	Ya5-MLS11; RIP_Alu_chr15_050_01	AACAGGACTTACAATGAGAGTATAGCTC	AGACTTTGTGTTTGCGACTCTTG	SINE	Alu	Ya5	gctttaaggcaaactagattccatacattctttgccgttcttccttttgtacatcatcaaagagctgcttggtgaggttgtccattttttctgtaaaaag<br>agaatgctttttgagatatgtctgccaaatcaatgccttgattgtttcatgttatgtttaagaaagtgagaatgtcaggacaatcatgtgatgtttatta<br>ttaacaggacttacaatgagagtatagctcattttttataaacaagaaataaagatgagggggtttcaaaataataattctcacaaatttgtcagattgg<br>aattatcaataaatagtttcatttatagtacttttgttggtctgttatttattaaagtagatattggctttgagacaatgaatattatt<font color="green"><u>AAAAATAAATA<br></u></font><font color="red">GAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AATTAAAAAAAAAA</font><font color="green"><u>AAAAATAAATA</u></font>aataaatagaaaccctttgggaagaaaatgatccatttgtgacaaggtttctcggtcttggcactattgctactt<br>tgggctggataattctttgctgtggagaggggctgtcccacgcattgcaggattctgagcagcaaccctggcttctaccctctagaagccagtagcacct<br>ctgctccagttgtgacaacccaaattgtttccagacattggcaaatgtctggggggtgaggtggcagcaaagctgagaaccactcatctgtgataaccaa<br>gaaaataatcaagtgtctgtctctatctgggaaagaggaagtacaaaaaaggcagctgttaacactgaaatacaagagtcgcaaacacaaagtctgcagg<br>ccgaagggcaggac	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:MYO5C:NM:018728:23/41
0	chr7	47799185	47799186	1001007	0	+	Ya5-MLS14; RIP_Alu_chr7_047_01	GGCCAGAGCATATCTTATCAGC	CAGTCATATGTAATCACGGTACTGTAC	SINE	Alu	Ya5	gactctcttctgtccttgcctcccctgtgttgttggatgttttttccagaagggggagttgtaggctgtcggacaaaccattaatcttcatcagaagttc<br>gtctaacagatttgcaaattcatccaagtagtaattctgaagggaagaaaattagattagtaaatgcattcaagaatctcattatccccctttcctcatt<br>atgtgaagcatttaggggtatcatctgtagacagtattgggctatgttaggaaacatactgactctgcctgcagttagaagacctgggtgctgggcctac<br>tcttacatctctatatctcagttgcttcaataataatgtacgtatacagatatacatgtaaatgctacagttaataatgcctacat<font color="green"><u>AAAAAAAACTATTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCTCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AGAAAAAAAAAAAAAAAAAAACAAAACAA</font><font color="green"><u>AAAAAAAACTATTG</u></font>aatggatttaaaggcagtaatgcatcatgctgctatgggaaaataaggtcattcttt<br>catcccttcgattaataaatctttattgagcactattaaaaaaataaggcaataatggatggggaagcacatgacagagaataaagccctatcaaaatgt<br>acagtaccgtgattacatatgactgccttcagaaccttactggatgatgcttaaatatcacctgatatggtttggttgtgtccccattcaaatctcaact<br>tgaattgtatctcccagaattcctgtgttgtgggagggacctggggggaggtaattgaatcatgggggctggtctttcccgtgctattcttgtgatagtg<br>aataagatctcatgagatctgatggctta	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:PKD1L1:NM:138295:55/57
0	chr16	78774941	78774942	1001008	0	+	Ya5-MLS16; RIP_Alu_chr16_078_01	TTTCAATTTCCAGCATTATTTCC	CAGCAATTCCATATTCCGCTAT	SINE	Alu	Ya5	aacagcatggggattcttcacacattacatactactaatccaaattaaatacagaactaccacatgatccagcaattccatattccgctatgggtataca<br>tccaaaagaaacgaaatcaatatctcaaagagatgtctatactcccatattcgtagcagcattattcacaatagtcatgatatacaattaacataaatat<br>ccatcaactgatgaatgaagaaaatgtggtatatatgtacaatggaatagtgtccagccttaaaaaaaaaaagaaaatcctgtaatttgcaacaacatga<br>atgaacctggaggatattatgcttagtgaaatacaccaggcacaaaagacaaatgctgcgtgatctcacttataggtggtatctt<font color="green"><u>AAGAAGTCAAATTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGACCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAAGTCAAATTCA</u></font>cagaagcagagaacaacagaatgatggttgcctgggactgggggcaaaaggggggaggatgaggagaagttggttaaa<br>gtctacaagatatcagctcaacagtaggaataagcactgaacatctattgtacaacatgactactatagttaataataacataccgtatacttaaaatca<br>ctaagaaagtcaatcttaaatattctcactaccaaaaataataaggatgtgagctgatggacatgtgaagtagcttgatttaatcagtttgcaatccata<br>catatatccaaacattactataaatatacactattttatttgtcaattagaccttaataaagctgggggaaataatgctggaaattgaaattttaaaatt<br>taatttc	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr20	9553207	9553208	1001009	0	+	Ya5-MLS20; RIP_Alu_chr20_009_01	AGGGTCATGGTATGTCTTGTAGTC	GTTTGAGATCGCTGTGACTTGT	SINE	Alu	Ya5	cttaaacatacttatctcaaaatttggcagaaagagtttttgctataaaaataagtaaggcataggagaactgtatcagaaaatgcaacttttgtccagt<br>cctatagaaattttagcctgtcttggttatcaatatctcagtcactgacatactcagtttcacatctcagcaagcactgacatcatgcctagcccatgac<br>gggtattcaataatgctgaacaaattgaatgttgaatacctaaaaaaggtatggatatggtgaataccttagaaaagagtagaatttgtacacttggaag<br>gtacttctagaaagatttttatgccatgtccaggatggggtagaaatattataaaggtaacagaatttcttccaacttatctgttttctta<font color="green"><u>AAATTAAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAACAAAAA<br>AAAAAAAAG</font><font color="green"><u>AAATTAAGG</u></font>ttcatgttttctccttacctctctgtcttataatgtgctagtgttcccattatacccttgacaagtcacagcgatctcaaac<br>acagctctgtgctttgtggaaaggccctggctctggagtctcctgagctgggtggagcacgcctcagctctgctatttgagagttgtgtgactgttggtg<br>agtcctttgggttctctgagcctcagatcacccagtctgtaaaagaaggataatacctacctcacaggggcttagatggggtaatgtgtgttcaaatatg<br>ttactaactatgagccccagtcctacatcccaaagtgagttcgcatctcacagaaacaaacaaacaaattatgaatctgttataagcaattaagtaagga<br>ttcttcaca	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:PAK7:NM:020341:4/11
0	chr15	68195693	68195694	1001010	0	+	Ya5-MLS21; RIP_Alu_chr15_068_01	TGGAGAGTTTCAGGACAGAGCAAC	CTCCCATAACACCTATGCATTTCTC	SINE	Alu	Ya5	atgattccagctagatgacattctgggaaaggcaaaactatggacacaggaaaaggatcagaggctgtcaagggttaaagggaagggagggatgaatagg<br>tggaccactggagagtttcaggacagagcaactactttgtgtgacactttatacatttgtcaaaatccaaagaatgtacaatatcaagagtgaaccctaa<br>tgtaaactgtggacttcacctaatcatgtatcactattggttcatcaattatagtaaatgtactatgctaatgcaagatgttagtaacgggggaaactgg<br>gggtgaagtgaaagggtgttggggaattctactttctgcttgatttttctgtaaacctaaaactgattttttttaaagtccttt<font color="green"><u>AAAAAAAAAGAGCGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAAAAAAGAGCGTC</u></font>atgaagtgtaatcacggagaaatgcataggtgttatgggagcaatctggggtagggggtggggagggcttgggagcatggg<br>ggtcactaatgaagtcaagacccttgtatgtaaagttagacagacaaagtttcaagttccacctctgccacttatccaccatgtagccttagccaagtta<br>cttaacacctcttaaacctcagcttactcctctgtaaaatggggctaatgacgcctgccaccaaattattatgtgatttaaataaaatgcaaataaagta<br>cttggcactgccagtgatgagagtcagtgcttggcgaaagagagctccttttcatgccatggtgggtgaggaggctggctcaggtggagagcaggaggag<br>aaa	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr3	40216627	40216628	1001011	0	-	Ya5-MLS26; RIP_Alu_chr3_040_01	GGTGTGACCAAATACCCCTCAG	ATACCCTGACCTAGTGTACCCATTAG	SINE	Alu	Ya5	ccttaatatccaacagactcctatttaaaaatcctatatagagaggctccagacaggctcccaatactccccaagattgaatataaaactttgttggatt<br>tatgcacatttttttcctccctagagagaagacctagagcaagcttattcaacccgtgccccatgtggcccaagaggactttgaattgagcccaacacaa<br>attcataaactttcttaaaacataacaaaatttttttttgcgatttttcttttagctcatcagctatcgttagcatattatgtgtgacccaagacaattc<br>ttcttcttccactgtggcccagggaagccaaaagattggataccctgacctagtgtacccattaggtcctcaaaagggcctatgat<font color="green"><u>AAAAAGAAAATGTA<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAGAAAATGTA</u></font>agaggcacaatttttcagcaaatgcctcattttctagacatgttctctgcaacgagtttatcttggaaggcac<br>ttctagcaattctttttctccaggggtatcagttgacagacatgtgactaagatttttcttctgaggggtatttggtcacacctgctctaaagtccttcc<br>aggctattgtttgtgcttgctgggctgctgtggacgtggaggtaagtggcgaggaatgggggagcaactgtgcctcagagcagctctgctttcagccata<br>ttatgatttgtcttctctttatttttatttttgtgggagatacaacctttggtacaagtgaaagtgcactctgctgccttccctttagatttcatttaag<br>ggaatcctctatg	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:MYRIP:NM:015460:10/17
0	chr10	16040973	16040974	1001012	0	+	Ya5-MLS28; RIP_Alu_chr10_016_01	AACTCATAGAATCGGATGTAGCACTAC	CTGGATTTAATGTGAGTAGACTTAGAAC	SINE	Alu	Ya5	gtaattaaaacctcagagttagagtgagtatgaggaattgttttgcaaatgaaggaaataatggagaatttagatttttttcccagtatataaagacatc<br>taaatcctgttgtatgaaggataaactcatagaatcggatgtagcactacacttttgtttctgggaccacctaaaactaacccattctaaccaggtggct<br>gcctaatctccatctgtatccttagagatctcatgatttctttagatgatgtgttaaaaaacatgctaggcttttggcttcaccattatgacctgttcct<br>tatataagcaagaattattaaacgtgtggttagcaaatgcttcacaaaatcaagttgcttgcttctttgtatcatgcttttctagaa<font color="green"><u>AAGTGAAACTTTG<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>ATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCATCCTGGGCGACAGAGCGAGACTCCGCCTCAGAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAGAG</font><font color="green"><u>AAGTGAAACTTTG</u></font>gaggaaatacccaagaaacaagaatattgcctcaatattgtttttaaaaagtcagaaagcgtaccgtcgat<br>aggaataatactaggctttgattaaatagtcaactccttaaggatgttctaagtctactcacattaaatccagtcatttatacttttttccctctacatc<br>tatacaatttgacagtgatatttgatgtacctaataagcttctgcaagaccttaaatcaccatatggaactctactagccaatggttagtatgggcctgc<br>taaccaatacactgaccacactaaaacaaaagccgtcttatgttggaaacattttgaaaggtaaagactgaaataaaaaggtctttcttgtaattgttct<br>aaaaatgcaactaaca	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr3	196096029	196096329	1001013	0	-	Ya5-MLS29; RIP_Alu_chr3_196_01	CGCTCATAGATCTGATCCAATCTG	GAATGCGTTGAGTTTCACAATGAC	SINE	Alu	Ya5	tcattatttactttatattgactttgtaaatgctatttataggtgagccatgatgagtactacaattccttttctttctcctcacaactttttgtttacc<br>ctggagttaataattgccttcttttttcccatttgctaaggtttctatgtactaaacaccaatttaaactctcttgaatgtgtacattttctcttaatat<br>gttcaagcacactaagaattctgtcaatttaattttcttaaagaagccgctcatagatctgatccaatctgggagttctttcacctctttctagattcag<br>atttcctctgttttgaatcccatattcttttctttctcagctttctcaatcattttggtgaaacaagttctttctctccttttct<font color="green"><u>AAGAAAGAGCGCATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAAAGAGCGCATA</u></font>gtaagtaaatttttgttcctgtcctgacacaactgaagaagtttttagtttattctcatacttaattgatgtggaattttaggt<br>ggaaaaatatcatctctcaattttgaaagcactgtgccattgtcatgttgtttccaacttagtcattgtgaaactcaacgcattctgattctgattcctg<br>tttctttgaatgaaatcagtttttctctgtattagtcagggttctccagaaagatagaagcaataagatagatagatgatagatagatagatagatagat<br>agatagatagatagatagatagggattttttagcagaattggctcatatgactacagaggctgagaagtctcatgacaggctgctgtctttaagttggag<br>a	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr19	3945561	3945871	1001014	0	+	Ya5-MLS30; RIP_Alu_chr19_003_01	GCACGATTGTCCCAACGAATCT	GGACCTGCCACGATGTCTTGTATAG	SINE	Alu	Ya5	gacaggctttcatcatgttggccaggctagttttgaactcctagcctcgagtgatccacccgccttggcctcccaaagtgctgagattacaggcgtgagc<br>cacagtgcccagcccagattggcttttgccccccactcagcagaatgcccttgagaccctcttgtcctttctaaattaatggcaatataataatatttca<br>caattcctgagggcttactgtgtaccagacactgagctaaatgctttatggccctacaatcaccctgtaaaatagatacaatttgtggtgcccagcctgc<br>acgattgtcccaacgaatctgccctcctgacatccgggtatgacctgctcacattgaacagggctgagctttataggatgtttt<font color="green"><u>GAAAATGGGAGCGTGC<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>GAAAATGGGAGCGTGC</u></font>tgtttcaggttaggctatacaagacatcgtggcaggtcccagtagctcacatcgtaatcccagccttttggaa<br>aaggggaggattgctcgaggctagcagttcaagaccagatttggcaacatagggagaccccgtatctaccaaaaaatcttttttttttttttttgagaca<br>gtgtctcactctgcagccaggctggagtgcagtggcacaatctcggctcactgcaacctctgcctcccaggttcaagtgattctcttgcctcagcctccc<br>gagtagctgggactactggtgaccagaaccatgcccagctatttttttttgtatttttagtagagatggggtttcgccatgttggccaggatggtctcga<br>tgtcttgacct	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr16	15400476	15400477	1001015	0	-	Ya8-MLS32; RIP_Alu_chr16_015_02	TACAGACGATTCTTACATGACCCAG	CTTGGGGAACCAGAGTCGTAAC	SINE	Alu	Ya8	cccaggaggtcgaggctgcaatgagctgtgatcacatcactgcacttcagcctggggaatagagtgagaccctgtctcagaaaaagaaaaggaaaaaagt<br>aacaataaattcaggtagcaaggcaaagctctcctattttaggaaggttgtaaaactgagagtactttaaaaattctttccaatccctgattaggaggga<br>gggaatataagagctttattagttaattacagacgattcttacatgacccagcaaaatattggtaatactgtgttccacttacccagcattaattaaatg<br>ctatgtagtttacgtgcctcatttcatgtgcccctccttacaattcgctaaggtgggtagagttacaaaggaggaaaagagctt<font color="green"><u>AGAGAGGTTAATAGCG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAGAGGTTAATAGCG</u></font>gacagagttcaacccaggtgtctgattcccaagccagagttgttaatctgttacgactctggttccc<br>caaggtagccccagcacaaagatcaattgattcctgcaatttccatgtaaagccttacgcaaacctccactctatccccttccacttcccctttcattga<br>aatgtgaggtaagggaaactgaaccagaaaaactgaaaaccggccaggtgaggtggctcacacctgtaatcccagcactttgggagaccgaggtgggcaa<br>gtcacttgaggtcaggagttcgagaccagcctggccaacttggcgaaaccccgtctctactaaaaacacaaaaattagccaggcgtggtggcgggcacct<br>gtaatcccagctactca	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:MPV17L:NM:001128423:1/4
0	chr12	105415083	105415084	1001016	0	-	Ya5-MLS34; RIP_Alu_chr12_105_01	CTTACCAGTACAAACAGCACTCCTC	CAGGGAGGTGCTCACTTAATTTG	SINE	Alu	Ya5	aaggaaaactttgcattatatgtaattgatgtgttccttaaaagtaggcatagggtagaaatcatattttggtaaattaaatcttttctactttatattt<br>tttgagacgaggtctcactatattgcccaggctagcctcaaactcctgggcgatccaccagctttggcctaccaaaaatctactttccaaattataatct<br>taccagtacaaacagcactcctcaattgttagttttctaaagttagattttcttgtatccagtttcttaaaaaaataaagcttaaggcatatagccttaa<br>tgcttacatcttaaggcaggggtgtccgatcttttggcttccctgggtcatacgggaagaagaagaattgtcttgggccacacataaaatacgc<font color="green"><u>TAACAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATGCAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAATACGT</font><font color="green"><u>TAACAC</u></font>aaatgatagctgatgggctaaaaaaaaaaaaatttttttttttaaatcatgaaaaactctcataatgtttttaaaaaa<br>agtttacgaatttgtgtcagaccgcattcgaagccgtcctgggccacatgccgcccacgggctgtacaagcttgcctgaaggtatacttaatggagtata<br>ccttaaggctttgtctcccctatcctagtaaaaccattctttctctttaaaatagctcaatcgcatgcttaccctgtgatgccggatgtaacatagtctt<br>tccccaagcagttataaccatggcgaacgaggtcctcacacacatccttcactttactgcctccaaacgcagtgccgtagtggaatctgccgtccagcac<br>accggccttgccagcc	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:POLR3B:NM:001160708:25/28
0	chr10	107667550	107667859	1001017	0	-	Ya5-MLS35; RIP_Alu_chr10_107_02	ATCTGTAGAGCCGCTGAATGTTC	ATGTAGATAGACAAGTTAGCCACTATTG	SINE	Alu	Ya5	gtctgaaggcacctcccatatttttgtcatcacactctcacatcaaaccttggcatgttatgtggtatgttttacatcctgcatccgacatttggaaggc<br>aacaagaattgcagtttgtccatgtgggaaattgcagtgtagacacgtgataagaggttgaaacctgtggtagagtatgacctactctgtgagtatgtgt<br>gtttgtgaatgtgtgtgtggttgatgggggcacagaagtgtgtaggcagagaaaggtttacttagtattagaaaatggcattacatgtagatagacaagt<br>tagccactattgtttagctttctctatggcaaccagctctcatttgaaactgtcacttgatttctcgttattgtagctgttgttt<font color="green"><u>AAGAAGTGATTAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTTGTCTCAAAAGAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAGTGATTAATG</u></font>gacctgagttaatctgctctttcaagaaaggaagcatttcagtctcttagccaactacatggtagtaccgtttcc<br>tagctgataagtaggaaagggactaatgtatttgtaataaaatagatgcagtggaaccagagcaatgattttgcaaaaaaatgaacattcagcggctcta<br>cagatttctcatgtgaattagggctgattcggagaaaaaaaacaaaaacccaaatcactgtggattttctcagatgaatttcagtattcaggagggtctt<br>agtttcttccttagcagacaacaacacagacatccagtaagggagattgatagacctcagaaatgggacaggacacgggtctggacctcgtagtaaagat<br>gccaccacca	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr11	45992825	45993158	1001018	0	+	Ya5-MLS36; RIP_Alu_chr11_045_01	TTCTTTCATTAATCTCCAAATGGC	AAATATTTGCAGTCTATGTAGCCAAC	SINE	Alu	Ya5	gataatggcctccagctgcagccatgttgctgcaaaggatattatgttgttcttttttatggctgtgtaatattccagtgtatatgcaccacattttctt<br>tatccaatccactgttgatggacacctaggttgattccatgtctttgctactgtgaatagtgtggcaatgaacatacaagtgcaagtgtactttttggta<br>gactgaggtattttcctttgggtatatatccagtaatgggattgctgggtcaaatggtagttttacttttattctttcattaatctccaaatggccgagg<br>ctgaactaatttacattcccaccaacagtatatgtgttcccttttttccatagcctctccaacatctgttatttttgactttttaat<font color="green"><u>AATAGTTATTCTG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATAA<br>AAATAAAAAAATAAAAAAAAATAAAAAAATAAAA</font><font color="green"><u>AATAGTTATTCTG</u></font>actggtgtaaagtggtatcactgtgcttttgatttgcatttctttgatgatta<br>gcaatgttgagcattttttcatgtttgttgactgcttgtatgtctcccttcaaaagtgtctgttcatgttgtttgcccactttttaatggggttatttat<br>tttgttgttgttgttgatttaagttccttacagattctggatattaatcttttgttggctacatagactgcaaatattttctcccattctgtaggttgtc<br>tgtttgctctgatagtttcttttgctatgcagaagctctttagtttaattaggtcccaaatgtcaatttttgtttttgttacaattacttttgaggactt<br>agccataaattctttgcctaggccaatttccaga	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:PHF21A:NM:001101802:5/18
0	chr10	85973240	85973241	1001019	0	-	Ya5-MLS37; RIP_Alu_chr10_085_03	ACACGTTGCCAAACAGTGATTATAG	CATTCCTCGTGTCCTGTCTTCTG	SINE	Alu	Ya5	tttgaaataacactgacataaaattgttcagaccttattggcttgaatttgtaatactgggacccagggaaaggaagtgacctctgtgggccctggggct<br>ggaattcaaacctgcctcttccttcctggaaccctctgctctgttttcatacctcagctgggattacctttaatgctactctgtagggttgggcatatca<br>caaagccggggatggcctccctgggggtatcccaaagctgaaaagaaaaatcttcgtacattcctcgtgtcctgtcttctgttctctgtctagaagacaa<br>ctaggaatagctgggtaaaacttgggaaatatagtcatttgcccaggtatttgttatacattatgacaaaaccctggatggttt<font color="green"><u>AAAAATACCCAATTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AATACCCAATTAA</u></font>ctgaattttcacattctgtattgttttgataataccttattggtttggcattcaatatcaatgaaagaaaattataggatttattgt<br>tgtagcctctttgaaaaccaagaaatgcatacaggtgttgtctttcgtggtgttctataatcactgtttggcaacgtgttatataatctctcagtaaaaa<br>tataagcattgaacacttactttcaaactaatgaggtaggtgattgcttatcatcccattttattgacaagaaaattgtcaagagaatttaagcaacttg<br>cccagtaccacactggataggagctccattagggatagcagcccaggcatgtggctccaggctctgaggaactgtgcatctggaaggtaagaaggca	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:LRIT2:NM:001017924:2/3
0	chr7	139579883	139579884	1001020	0	-	Ya5-MLS39; RIP_Alu_chr7_139_01	CTAGGCATATTAACGCAATAAAAGTAG	CTTGCTTTCTAGACCTGAGCTGTC	SINE	Alu	Ya5	aaagtagaaagctggggcgtggtggctcacgcctatagtcccagctattaaggagggtgaggtgggaggactgcttgaggccaggagtttgaggccaccc<br>tgggcaacataatgagacccccacctctaaaacaaaattagccaggggacggtggggtgtgcctgtagtcctaactgttcaggagcctgaggtgggaaga<br>ttactggagcccaggaattcctggctgtagtgagctatgattgtgtcactgtacttcagcctgggagacagtgagatgaagaaagaaaagaaagaaaaga<br>gaagagaagggaagagaaggaaagagaaagaaaggagggagggagggaaggaaggaaggagagaaaaagctgaaattaattgt<font color="green"><u>AATAATCTATTTGACTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>GGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>ATAATCTATTTGACTT</u></font>aacccaatagatctaaaatactttaatacataatcaatgttgcaagtattaatgattacatttttttccttactgagtctttga<br>agtccaatgtttgtttgacacatacaacacatctcaatttggactagccagacttcaagtgctcaacggccccatgtggctagtggctaatgtactggac<br>agctcaggtctagaaagcaagggctgataaatgaaaaggaagcaaatagcatccattgataggaatacaagttgtgtaggatgtaagccactgactttga<br>gtgccgatttcttagttttattttagtgaaaataaaatcagttcacacccagtatcagttccctaaccctatattcccctaaggtcccagattactcaa	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr8	106733693	106733694	1001021	0	-	Ya5-MLS41; RIP_Alu_chr8_106_02	TGGTTCGACATCTTTGCATAGC	ATACTATTTGGTTGACCCTACTGTTG	SINE	Alu	Ya5	ttcttgaaagactgcacaagctaaacgtagctgacctaaagaataatcattcttgaaaatctttactaacaatgtataccagacaatgatggtgagtact<br>agatttctaaaggaaaaactggcttaatttactgtcattgaatttcaataggaggtagctagaaatacatgcataaatagatgggaatagcttatctata<br>tgtatttctgatccatttccttgattggaatactcttgcttgcaacaccatggtatactatttggttgaccctactgttgtttgacagtcttcacaggcc<br>tcagacagcctcatgagaatacaacttctctgaagtactactgtatgtcaggcatataaggtgacgttttaattttaaaaataggcttcaaaaat<font color="green"><u>GGGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGGGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCC<br>AGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGA<br>GCGAGACTCCGTCTCAAAAAAAAAAAG</font><font color="green"><u>GGGCT</u></font>tgacttctacatcagtggtaaaatgaaaagcctccaatttcaggtattagagcaaagagtagaggttt<br>ctgactgaccttcccctagtgaagagctgaaacagacactgttactatttaccagtaaagtgggtccaaaaagaaccacccagtaatagcaagccaatga<br>cttggcatggctgctatgcaaagatgtcgaaccaaaccctgtggtttgacaacatcttttgcatctatgtaggttttgtttcaaattcttgtatacactg<br>ccatgctgactgatgcagcataatatatgctatgtatatatgcaacatttcaaaggaatcctcttcatctagattctctggtattttaaaaatctcacta<br>aggaatgttacattttttgagacatgg	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:ZFPM2:NM:012082:5/8
0	chr6	121496787	121496788	1001022	0	+	Ya5-MLS44; RIP_Alu_chr6_121_02	AGCCTCTGTCAGAAGCAATAACTAG	CGAATTAAGTCTTTACCTAATTCTTGTC	SINE	Alu	Ya5	cctaagaaaactgctacgtattgctgcatgatcctcatgattatcatatataaaatcagatttatgtaagtatttccctatttgacatttacgtcagaaa<br>aaccctttttataccaaagctacatacatactctctcatacaaacacatgaatacacagatacatacaccaaacacatgtggactcacataaatacacac<br>ataaagcaaaaagctcttttgttgaaagcatatgtaattctgctattcagtactaatctattttatttgaataccaagactacaatgatacgtttcacaa<br>atagcctctgtcagaagcaataactagagaaaaattatcaagcattaaatcaaaagagaaaatgattctttttaataaaaacactt<font color="green"><u>AAAACTATAAACTC<br></u></font><font color="red">GGCCGGGCGCGGTGACTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAACAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTATAAACTC</u></font>ataaaatttcaacacagctaataattttactgaaaattatgttattgctaacaaaaaagttttaat<br>gttaaatgtatcttgacaagaattaggtaaagacttaattcgacattattgaaattgaatttttattgttttcatttaaaatatccacattacatattgc<br>caagaataaaatatctacagtctaataagaaacactagtgacacatgattgcaaagataatgcagttttttcatctttgtttcctcctgttttcttcttc<br>tactcatgtgtaactccatcttttacctccttcaaacaaaggatgttactacctccttcagaggacatccatatagccctttcataggctatctgttatt<br>tataaatctgttttcttttt	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:C6orf170:NM:152730:24/32
0	chr13	53422085	53422391	1001023	0	-	Ya5-MLS46; RIP_Alu_chr13_053_01	TCAGTAAGCATGAGTCTTCCAGTTC	CCCACCACAGATGGCAATACTC	SINE	Alu	Ya5	tagagactgcctacagtccttggcttatggacctgtccatcttgaaaaccaacaatgtctagtggaatctttcttgtatcccattgctctgacactgact<br>cttctgactccctcactatgtttgggatcactcctgtttacagtggcccatctcaataatccagataaatctccctatttaatgtcacctgattagcaac<br>cttaacttccctttgctatataacataaaatacccatagtttctggggaccaggatatagaaatctttgggggactattattgcccaccacagatggcaa<br>tactctccaaatatatttagagatttagtgtaatccctatcaagatctcagttggcttttttcaaatttacaagctgatctt<font color="green"><u>AAAATTCATATGAAAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAATTCATATGAAAATA</u></font>aaagggactcatgatttccacaacaatcttgaaaagaaaaaagaactggaagactcatgcttactgatttaaaaa<br>gttactacaaagctacagtaattatgattacatggtattggcatagggataaacatataggttaaagaaattgaattgaaaatccaaaaagaaattcata<br>catttatggtcaattgattttcaacaaggatgccaagacaatttaatgggtgaaagaatagtcttttcaacaaatgatgttgacaataggacactgggaa<br>ataaaaagacatacaacccccaaatttaaatgtgcaaaggattttaacacacatttttccaaaaaaggtatataaatggtcagtcagcacagaaaactgg<br>gcttaac	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr4	188923162	188923163	1001024	0	-	Ya5-MLS50; RIP_Alu_chr4_189_01	TAGAGGGCACACATTGAAGTTTTC	CACTTACATTTAGAGGTACCAATGAC	SINE	Alu	Ya5	gccagctcgaatgcctggctttatatcccaatccttgtccctcccgctgcgctctcaggcaatagatgattggctatttctttacctcctgtttttgcct<br>aattcgcattttagtgagctctctgattggtcaggtgtgagctaagttgcaagccccgtgtttaaaggtggatgtggtcaccttcccagctaggcttagg<br>gattcctagttggcctaggaaatccagctagtcctgtctctcacctccagatcctattttcccctcacttacatttagaggtaccaatgactatttccag<br>tagtatggagagcattgacagttcatagcatgatctggcagtagaaatttgcaaaatattaccattagattcccctaatcaaccgcttat<font color="green"><u>AAGAAGCAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAGAA<br>GCAGG</u></font>gtgagtgtgtatacaatattatacaatattcttcaatatttttgtcaaaataatgagtataatgatattggctgtttgctcctaatgtcactgga<br>caatgtgggaaaagaaagaaataagctcccagctcaagggttcaatagatgacctgaaaacttcaatgtgtgccctctaggaggcctcatctctagccat<br>agggctgagattgctgaaaatcaagcctgaatcttgtcctgtgaccagctcaggaggcctcatctctctagccacagggctgagactgctgaaaatcaag<br>cctgaatcttgcctcatctctctagccacagggctgagattgctgaaaatcaagcctgaatcttgtcctgtgaccagctcaggaggactcatccc	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr1	220885815	220885816	1001025	0	-	Ya5-MLS51; RIP_Alu_chr1_219_01	TGGAGAACTGTCCTTGTTGTGAGTA	AGTTGAAATACAGACCCACCTAATTC	SINE	Alu	Ya5	atgttggctaagctggtctcgaactcctggcctcaagtgatccgcctgcctcggactctcaaagtgctgggattacaggtgtgagccactgtgccggctg<br>actggttatttctttaggatcgattactagacatgacattaatacaatataaaaggatataaccatttttaaggcttatcatacacatcatgaaactatt<br>tttcaggatggctctaagaattcctagttctactaacagtgtacatatgacctatctaattctttcttttcatcctttgtgagttgaaatacagacccac<br>ctaattcttaaaatttagactttgatatgagacatataaactgaagttttcccactgagattatacatgttgtcttattcactt<font color="green"><u>AAGAATTTACCAACAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTTACCAACAC</u></font>aaaaattatactaaattattttacgaggttagcttgaattaaaagcattaatttctgt<br>tcatattagaaactgaaaaagagacaaaaggactgtgattataaaaccatacttgaatttatgagttaaagtatgcattaatttactcacaacaaggaca<br>gttctccataagaaaatggcaaacgaagcaattcccaagaaggcagtgataaatacaggtttccatggcagtccataaaaatcaggcccaggctgaacat<br>catcaggcaatgtagcaactagctgaatgttagaaataatgttagaaataatgagaaaccttaaagaagcttaccataaagcagtcacaaagactcattc<br>acagaaattctaaaccaactctatca	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:MIA3:NM:198551:7/28
0	chr4	148475498	148475499	1001026	0	-	Ya5-MLS57; RIP_Alu_chr4_148_01	GGTAAACATAGGCTTCTGATTCAAG	TAGTTTGGCCTGAAGGAAAAGTG	SINE	Alu	Ya5	gcaaagatttctttctgaaagatggtagaaacaatttttcctttgatgttgtctctcagcattctgaatttgatttgtgaaggtattttgtgcagcacat<br>caatctttgctaaaattcttcaagtttctctttgcaaaaaccagcagaaatttaccagagtaaattatgaaacattgctgcagttgactccaacaaacca<br>gagttccacaacaaaatgaatgtacaatacaaaaaataaaatttagtgggccttgttattgttttacatatagtttggcctgaaggaaaagtgaaactaa<br>gttataaattaagttgtatatcatctaatagaatgaggttttgaagtagtaatagaattttgaaactctctgaattcttgtctaaaac<font color="green"><u>AAAAATCATCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAATCATCCC</u></font>ttctttttgctgtattctcttgaatcagaagcctatgtttaccagctgctctaagtcactctttcctttattgcagtgt<br>ttgacactataataccttaaagtgggggttgcttatcttgggagtggtggtaaatgttgagtgaatgtgggaaggaattatagatgtttaacaactgttt<br>gcaaaggttccagggttcttgggagggaacaggaaatattaattttatactagctcccaaagccaaaaggaagaagaaaaaaaagaagcttcttaatctg<br>tttagattacctctaaggagatgagtcatgagtgaaattcaggattaatatacaagaagagctcctaagagaccgtctagactacaggccatctttctct<br>ttcacagaa	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr1	118882228	118882229	1001027	0	-	Ya5-MLS58; RIP_Alu_chr1_118_01	GATTTAACGACCAGCTTAAAAGATTC	AATAGATCATTATGAGGAAAGGCATG	SINE	Alu	Ya5	gctgcacgaatacaagggtaatacagacatactgcttttatccagtaaatattgggataaaagtataaaagtcgctctaacacaagattaaacatcataa<br>atgttttaagagggctataggccaataactatgaagacccaagaaacatttgatataggtctttaagagatgagggaaaagggcatttctagaaaataga<br>tcattatgaggaaaggcatggtgataggatagcagagaacatctctggggtataataatcaatcctttatgtaccagtatataaagcacctactagtaag<br>cattagaagatctggggaaagtgaattaattttttctgggattggatttacacagaggcatgctggagctggctcacaccagcttat<font color="green"><u>AAAAGCTGGTTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGTTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAGCTGGTTGC</u></font>taatattaaagaatcttttaagctggtcgttaaatctttggtagcttgaaattggccatcttaagcatatttactctactg<br>aacatgtacatgctacataaataaatctggctttcattctctctcttcctctttctatctcccttccttctcctttcttctttctttcgtactcttttcc<br>agataaccggcacactactggatttatgtaacaccaggaattagattattatggaccctctgaacagttgaattgtttcagttttcattcagatttaaaa<br>tgttgcttgtgggtctactccctagcctgatagtttgcaagtgagaagagccatggaaactgcagaagacaggagctcctgactttctggccttcctagg<br>atcatg	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr1	80966942	80967256	1001028	0	+	Ya5-MLS59; pAlu1-80585314; RIP_Alu_chr1_080_01	GTTGAACTAAATGCATAGCCACCA	GGGAACTTTTCAGTAATTCGTTTGA	SINE	Alu	Ya5	catagtatttcagggcattatctctcaagtggtaccttaactgagccttcagcaggccattccaatgttctatctagctacatgctactgaaggtaaagc<br>atatttaacgtgaaagtatatattttttatgaggacaaattgctctctccttcattatggaaagattaacacttccatctgatggctgcgtggtcagcca<br>ggaaaccagttctatttcagaggctcaatattggtctgtgctgttggcagattgggcaataagcggtggtggtattccaaccagccattttaagaagtct<br>atatggttgaactaaatgcatagccaccatctttaccaatttgtaaatgtgcctattgagcaagcaaggggctagggaatgaaaggag<font color="green"><u>AAAACTGGCTGG<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGTG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTGGCTGG</u></font>catccagaggaagggctgtgacatcaaacgaattactgaaaagttcccctgcaatagacatttcatgagacta<br>ttttcatgggaatatcttcacattctgttgattcagaaaggttcattcacattttcataatttcaacctccttgttacaattcttctagtcctgttcttt<br>ttaggcaatctgtcttagtctgtttgatatgctataataaaatactatggactgtatagcttttaaacaacagaaaattattttatacagtccagaggct<br>aagaggtccaatctgcactaacagatttgttgtcaagtgagggcctgttcctcctaaatggcaccttctagctgtgttctcacatagtggaagggtcaag<br>acagctgcctgaggc	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr12	16067672	16067977	1001029	0	-	Ya5-MLS64; RIP_Alu_chr12_016_01	CTAAAATACATAGGCTCTCTGAAGAGG	CAGCAGTTTCCAGCTTACTGATG	SINE	Alu	Ya5	atgccttttgaaactgtcccaaagtttttggatgttctgttctgtgggggtttttcttcccagttttttctcttcacatttcagtttaagaagtttctat<br>tgacctatctttaaggtcactgatttttttcctcagcagtttccagcttactgatgtacccatcaaaagcattcttcattttgtcccagtgtttctgatt<br>tctagcatttcctttcaattcttacttagtttccatctctctgattctattatgcatcttttttcatgttgtctgttttttcattaaagctattaacata<br>ctagtcatagttattttaaattctctgtcagataattcccaaatctatgccatatctgaatctgattctgatacttgttttctctataaagactg<font color="green"><u>TTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAGAC</font><font color="green"><u>TTTGA</u></font>gttttttttcttgcctctagcatccaatgtattttttgttgaaagctatgcatgatatattgggtaacatgaacaaaaacaaatgggcc<br>tttggtgtaaggttttatgttaatcgggcaaggagttgggctgtgtttaaggtttgctgtagctgccatagtcttcaaatttctatagtattcttgtttt<br>tatctcccctctttattctgggcttccctaaaattcctcttcagagagcctatgtattttagctctgtcagctgtaatcttatactgaaaccatgttgct<br>gtggtggtaacagatgagggaggagtattctatagccttagtattaaatctcagtctttcagtggtcctgtgtccctgggctgtaactgtcacaaatgtt<br>tcttag	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:DERA:NM:015954:6/9
0	chr14	34197792	34197793	1001030	0	+	Ya5-MLS65; RIP_Alu_chr14_034_02	AATTAGAACATGTGGCTCCCTTATC	TTGGTCTCCTTCAAAGCAATTTAC	SINE	Alu	Ya5	tgcagccctgtcagcatgttgattttagctccttgatttcagtgaaggccctttttcacttctgacctccaaaacaaaacgataataaatgtgtgttttc<br>ttaaaccattaagtttgtggtaattcagcgcagcagcaataggaaacaaatatacatggcattctcaattctgtgagctattccaggatccctgaagcaa<br>atcctcctttttacttaagctaatttgggttggattttggtctccttcaaagcaatttacaagatctcttattataaaacagtacttctcactaggacaa<br>aaatcagaccttcagaaataaaatacatgtgctataccctaaacatgtcatgacaagatttcttctgagtgatgaatggacagg<font color="green"><u>AAAAAGAAATTTGAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTGAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACGGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AAGAAATTTGAAG</u></font>aagtataacaaactagcatttgacaggtaagagtatgtcactgaattaaaatgtagataagggagccacatgttctaatttccctct<br>gatttcttctttgtctcacgggttatttggcagtgtgtgattggattccagaaagatattccaaatatctttctgttgttgacttctaatttaattttat<br>tgtgttcacagaagatcctttgtattatttgaaacttttggccaggtgtggtggctcatgcctgtaatcccagcactttgggaagctgaggggggaggat<br>cacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaagtacaaaaaaattagccgggagtggtggtggcac	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr13	54336089	54336090	1001031	0	+	Ya5-MLS69;1104685361072; RIP_Alu_chr13_054_01	GTGAGATATCTAGTTGTGTCCAAGCA;NA	AGAGGATACGAAGGAGAGGAACAT;NA	SINE	Alu	Ya5	ggctgcttttccaaatttttgaagtattttgaattctaacatgatactgtcatccaaggtgttacccatttcacccaacttgatgtaatcaacactttgc<br>aagcgtatgctttttatgaaagcttgttacatcaaagaaggaagtgagaaaactgaaaaaggttcctgaagctcagaaagatctatgattataaagtgta<br>ctaaaattctgcaacagtgtcttgaagaaatcagtttcttttagaccactgaaacatcaagcacccttgtggcattgtgagatatctagttgtgtccaag<br>caaaacagcgtatatcatcaagaaaacacctgcactcagctgtaaatattttaacaattggttcaatgtaattttgcaacattt<font color="green"><u>AAAAGTTCACCTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGCGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCTAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAGTTCACCTTTTT</u></font>atacatatgtatacatatactttttatatataaatgtataaatatatatacttaagctttatcctctaagtatccccaaa<br>gccaaaatgttcctctccttcgtatcctcttcctatctctctggattagtttcactagacagagataagaaaatataattgaagactataccaactttag<br>aaaaaaaaatacctatcttcagatactggctgtggcacttgttagctgagtgacctttatcaaattacttaacttcttttatctttagttttcttatctg<br>caatgtagggatagtaatacattctcatggggttagcagaaaaataattagtctattcacagtgccggcatataacaggtagttagtatatagaaactgt<br>aata	Other;Venter	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic
0	chr13	109874813	109874814	1001032	0	-	Ya5-MLS70; RIP_Alu_chr13_109_02	AGTTACTGGATGCATTATATTGAGGA	CTCATGATCAGTTACGGTTACTTTCA	SINE	Alu	Ya5	ttactccgggggctcccctttcacccttgtctcctttacgtccctgcagtcccgggaatccttgtaatcctggtggcccattgtacccctgggggcccac<br>tggcccaggctgaccctgtgggaacaacaaaggttcaatttccacgattaatcacaatacatactcatgatcagttacggttactttcaaaactacattt<br>ttttttttgtttttaaagagctataatctacagggaacattatatgtaaactatcgtctactgccatgatagctaacaaaagaagtcatagagtttaaga<br>agagaaaatatggaatgtgagaaaaaaattatcctaaattactaaagtcatgtcattgtgaaatgataatactgggttgggatg<font color="green"><u>AAAGAATTAACTTATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAACCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAGAATTAACTTATT</u></font>tgggttctttttaaggtcatttcagtataaaaaattttccaaatgaatttctacaattttatctctattttcctcaatataat<br>gcatccagtaactgtggaaatgtgtattgcattcaaatatcaaaaagaccctcagatgtttaagtggttaatctctccttttgttcacatagagggaaaa<br>aaaagagcttctgaaacatataaaaatgtttgtccacactaaataggatggctgttattaaaaaaagttataagtattggtgaggatgtggagaaatcag<br>aatctccgtgcgctgctggtgggcatgtgaaatggtgcaggtgctttggaaaacactctggcggctccttaacacattaaaaaaagagaatcactacggg<br>a	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:COL4A2:NM:001846:4/48
0	chr10	118267144	118267459	1001033	0	+	Ya5NBC205; RIP_Alu_chr10_118_02	ACATGAAGGGCCGACTGTAT	TGCTGCTGCATTATCAACTG	SINE	Alu	Ya5	tcaaattaaactgtagttgtcccttgatagcctcagggattggttccaggctccccccacccaggatatcaaaatcctcagatactcaagtcccttatat<br>aaaatgttgtggtatttgcatacaacctacatatatgctccagcatactttaaatcatctcaagattactcaaaatacttaacataaggtcaatgctatg<br>taagtagttgctatgttttattgcttttaggtatattatttttattgttgtattgtcacttttattttttttttctgcaaatattttcgatctgcagttg<br>gttgaatctacggatgtggcactgaccaacatgaagggccgactgtattaccatggcactgaattttctgagttaaagctacttaaaaatatcaccgt<font color="green"><u>TA<br></u></font><font color="red">GGCCTGGCGCGGTGGCTCATGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCGGATGGATCACGAGGTCAGGAGATCGAGACCTTCCTGGCTAACACGG<br>TGAAACCCCATCTCTACTAAATATACAAAAAATTAGCCGGGCGTGATGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCCGCGCGGCGGAGATTGCAGTGAGCTGCGATCGCGCCGCTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAGAAATGA</font><font color="green"><u>TA</u></font>acaaagaatttagaatattgcagaaactcagttgataatgcagcagcagagtttgagaggtcttgctacaatttggaaaaag<br>ttctactgtgagtaaaatgctatcaaacatcattgtatgctctagagaaacactttgtgaaaggaagagtcaattgatgcagcaaacttccctgttgtct<br>tattttaagatattagccacagcctcccacctttgccaaccactaccctgatcagttggcgaccaacactggggcaagacctccagcagcaaaaagatta<br>tgactcactgaaggctcagatgatcattagcactttttagcaacaaggtatttttaaattacagtatgcacattggttttttagacataatactgttgca<br>cccttacagtgtagca	UCSC	<UL><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID:11042148</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	50	435	81	NA	intergenic
0	chr7	83588894	83589190	1001034	0	-	Ya5NBC7; RIP_Alu_chr7_083_03	TGATGGATATTTGGGTTGGTTC	GGACTGTAAACTAGTTCAACCATTGTG	SINE	Alu	Ya5	tgatgatgagcattttttcatgtttctgttggctacataaacgtcttcttttgagaagtgtctgttcatatccttcgcccactttttgatggggttgttt<br>gacttttttcttgtaaatttgttttagttctttgtagattctggatattagccctttgtcagatgggtaggtgtggagaaataggaacagttttacactg<br>ttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcaaggatctagaactagaaataccatttgacccagccatctcatta<br>ctgggtatatacccaaaggattataaatcatgctgctataaagacacatgcaaatgtatgtttattgaggcactattcacaatatc<font color="green"><u>AAAGACTTGGAACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>GACTTGGAACC</u></font>aacccaaatatccatcaatgatagactggattaagaaaatgtggcacatatacaccgtggaatactatgcagccaaaaaaaggatgagt<br>tcatgtcctttgtagggacatggatgaagctggaaaccatcattctgagcaaactatcgcaaggacagaaaaccaaacactgcatgttctcactcatagg<br>tgggaattgaacaatgagaacacttggacacagggtggggaaacatcacacactggggcctgtcgtggggtggggggagtggggagggataacattagga<br>gatatacctaattgtaaatgaccagttaatggtgcagcacagcaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatataccc	UCSC	<UL><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID:11042148</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	522	216	NA	intron:SEMA3A:NM:006080:3/17
0	chr10	92805379	92805684	1001035	0	-	Yb9NBC12; RIP_Alu_chr10_092_01	AACACCTGAGAAAGGCTCATTG	GCTTTGGAAAATACCTAAGAAGCAC	SINE	Alu	Yb9	ttctcagaaagaagcaaacattaatatgtgttgggcactgtctgatggcttggctctaagtccagggcagttgcccttgtcttctaagtactgtacagag<br>cgaaaaggcttaccaaaatccaaaccaccttgaattaaagaaatctgaatgaggagcggcaccattctttgtatgtgtgtttttaaagtctttgctgtgt<br>tactgaatgaagaaatgcagtatattatacctctattgatgtaaacgagcctcaaacatctcaattccaccctcttcctaccccacactcatcaaatgtt<br>atgactgctagtgacactttattcaaattacaaaccatagtttttgctctaaaaaacaaaacacctgagaaaggctcattgcttt<font color="green"><u>AAAATCAAGAATCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAATCAAGAATCTG</u></font>taaaagcaatgccaccccaatcctaaggtgcttcttaggtattttccaaagctctttgctcttttatactacagcattt<br>tcaggaggagtcattaggtactcccaaggtccaagaaataactaaaaacaaaaaataacctgagactcttttctgcattaccaccagcttcccagcacac<br>taggtcaccttttacagcagtaagcaaagcaacccatgccacaaaaatcttcacaaaccaagaaggaaaggtacaaaaagaattatattaaaacaataac<br>gtacatttgtgtgtatgaaggagggatatttaaaaatttaaaatattatatcatcacaagaaagagcagacattccttgctctgcccttgggcaaccaag<br>aaaatt	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	414	93	NA	intergenic
0	chr14	90254948	90254949	1001036	0	+	pAlu14-89175235; Yb9NBC22;1104685286116; RIP_Alu_chr14_090_01	TGCACAACTATACACCAGACACTG;NA	TTGTCTCCCATCAGTAGAACCTAAG;NA	SINE	Alu	Yb9	gtgttatttcttgctaaggtcaaggaaattgtttgatgcctggcactcaccattctcctttaacagaatgagatcatatccaggaagacctaggtggtcg<br>tagtgtatctcccgctttaccacaaagaaacaagaataggagccgtaagttccatgaagccggtctgggctgtcctattcggccttagatccccagcacc<br>tagcacaacgtgcacaggtgttacatcaactacttttacagacaatatgcaactctcagatagacatctatgagccacagccgtctcagctgaaaatgaa<br>aagtacatccatttattcattcattcatggatgcacaactatacaccagacactggggcatacaggtacagatctgttcccacgc<font color="green"><u>AAAATTGACCAAAAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAATTGACCAAAAT</u></font>tcctgcccaagtggaacttaggttctactgatgggagacaactgtaaacaaattaaataagacaaaatacaaat<br>gggggcaaagggttaaattccttccctcttcttttgagaatttaacctcaggttggccgggcacagtggcttgcgcctgtaatcccagcactttgggagg<br>tccaggtgggcagatcacttgagcccaggagttcgagaccagcctgggcaatgtggtgaaaccccgtcgctacaaacaaacaaacaaacaaaaaaacaaa<br>aattagctgggcctggtggcacgcacctgcagtcccagctatttgaggttgacatgggaggattgcttagccctgggaggtcaaggctgcagtgggccgt<br>gactgcaccac	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	55;NA	435;NA	110;NA	NA;NA	intron:TTC7B:NM:001010854:5/20
0	chr1	183203677	183203982	1001037	0	+	pAlu1-181457211; Yb9NBC50; Yb8NBC299; RIP_Alu_chr1_181_01	GTTCCACAAGTACAGGAGAAAATGT	GAAGCTCTTTAGGAAACCAAATCTC	SINE	Alu	Yb9	atgaaattagaaactacctttacaaattgggctcctgctattgcactttctacctgtgaacccagttcaaaccttcccagagattacaataaagtaaaaa<br>gctcagtagttcacagtaaaagataataaaaattactattgtcatcctagtagttactattactagagcacctttgatgatgtggccctcttacagccaa<br>cgtccatagtaaaaagaagtttttcatcaagaccagggcttgattcatcatctaactccatgggatttatcaaggcttgtattagaagccacaagaggga<br>aagtcactctttgttccacaagtacaggagaaaatgttaatctgtctcagtctactgtcttttctgtctttgtggttgactctt<font color="green"><u>AGAAATCACAACTCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGGGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGAAATCACAACTCAC</u></font>aaaatccttcatggctttgcaacatgagatttggtttcctaaagagcttcccatttctaaagtattggtttcaattca<br>caaagaccaaaggaaatagaaagtaattattgatactagcaactcctaatttgcagtagttttacttatttgaaactcctgctagcttccttggtagtct<br>ggcatgcttgaaggcattttttttcacttaaaatataaagtgatcaatatgcatttgtgcactattcatagtggaccctctttctcctgtttcctccatc<br>cccactactctggaggagctgcaatttctcacttcttacaaaagcctattcatgtctacaaatttagagctgagacaaatactataatctttacccactt<br>tctact	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	460	138	NA	intron:FAM129A:NM:052966:1/14
0	chr16	64077514	64077821	1001038	0	-	Yb9NBC7; RIP_Alu_chr16_064_02	CAGTAAATGATGGGAACAACCTTC	CTAAATGTCAAGCTATGCCACAGA	SINE	Alu	Yb9	gttttagacatgctaaaacatgttatatcaaaacatcacagcaaccctatagaagaagatgacatgatggctactatctgatgaaagaaagaaggtccag<br>gcattgctctacagcaaatcaacagtaaatagatccaaaagaggcaaccgtggaatgcactttaatctaagtcaatgcagcacctctcgtctttatgctt<br>caggtttctgcatacagattactcggagcctgccaaagagtttcatcagtctctcctgtgctttgggtttctaatatgctctaagtcaacactaggattg<br>tgttgatctgtgttagaagctaagagcttgagcaagctggagtccccattgcagtaaatgatgggaacaaccttcgaacttgccatt<font color="green"><u>AATAAACTGAACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAATAAAA</font><font color="green"><u>AATAAACTGAACT</u></font>gttcatgtttctgtggcatagcttgacatttaggccgagagtttgtaatgccaataaacagctcaggatgtgatgtgat<br>atgtgtgtgtgtgtgtgtgtttggctgtcacacaattaaaagcttaactgagaaggctaaagctttcattaaaagccatcgactttcatttatttagtgt<br>tttggggacctggagagagtacaaatcaagaataggcctccaggggacatctttttagacatgagccaatgatgctagtctaactattggagtacaggca<br>gccttatttttaggttaagaaaaaaaaaaaaacgaatgaacaaatgtggtcatttgaagaaatcagacatgtgattatttttccttcactacaaaagtat<br>ctgagaga	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	58	403	83	NA	intron:LOC283867:NR:027755:2/9
0	chr7	42516240	42516547	1001039	0	+	pAlu7-42256394; Yc1NBC1; RIP_Alu_chr7_042_04	AGTACGTGAGGTTTCTATGCCTTG	GATTTGTCCATAATAGCCCCTAACT	SINE	Alu	Yc1	caaaggaaaaccataaggaaatactcctttgcatccatgaaatggctaaaataaaaaagactgatatgcaaaatgcggtaagattatggagcaacaggca<br>gtttcatacattgctgtggggagtgtgaagtggtacagtcactttggaaagttgtttggctattcttataaagttaaacatacatctacatgagaagcag<br>caatcccactcctaagtatttaccaaagataagtgaaaacatatgtccacaatagacatttacatgaatgtttatgtaagatttgtccataatagcccct<br>aactggaaacaatgcaaatgtgtctcagtagaaaaatggataaacaatttgtggtttattcttacagtggaatactattgagcaat<font color="green"><u>AAAGAGGAATGAGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCACAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAGAGGAATGAGC</u></font>tactgatatatgcaaggcatagaaacctcacgtactgcggactgaaagaggcttgtgcttacacaagacatataatgt<br>acaattccattaaggccaattaaggtcaaacataggcaaaactaacccagcaggatagacactgagagctagggctgcctgtgggaagtgaggagccctg<br>gcaaggacatgaggaaaccttctgaggtagtgggaatgtgcgacatcttgtttgtggtgatggatacaaaagttgacacattcatcaaagctcgccacat<br>cattcacttgatatctgcatatttcactcaaagtaagttttatttatttatttatatttattcatttatttatttttaagatacagggtctccctctgtc<br>acccaggc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	481	159	NA	intergenic
0	chr2	89641180	89641484	1001040	0	+	Yc1RG125; RIP_Alu_chr2_089_01	TGTTCTCTTCCTGTCTCCATTTC	CTGTTTCTATGATCTTGAAGGATGG	SINE	Alu	Yc1	cccaagactgaaaaactgaagtgcaaagaagaaatgtagcaaaaacctgggtccttttgctgtcaccaagttgctgcaccaacctcaaatgttccaaact<br>tcagaattcttatctctgcttcagctattgctatcatttcttgcaattgcttctaaaattattttaacttatccagaaaaaatattcaagggaaagagac<br>tgactgggttcttatttgtgtttatgggagtctaagacacaaaaaaacaggaaatcagaaaaagtgatgtcttctcctaacatctttgtcattctatgcc<br>catggttagagaaatccaaaccactttgaagaatgtataaattctgctctcttcctgtctccatttctctttttatatcttaagcat<font color="green"><u>AAAACAGCTCCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAACAGCTCCTT</u></font>gttcttcttaatgtctccatccttcaagatcatagaaacagaatcatggttaagaaactggaaaaaacagttggagaaaaca<br>tgaaatctagggattgtatgcatttcctctacactaatgtggtgtttgcagggttcccctgcttctcagttgtttttgctgaagatgccgactgttccag<br>ccagattcctgtcagaggttgtgtttggagggtttaaaagaaaagcttccaggggcttagggctgaattccaaaaaggatagccggagagtggctctgga<br>ttcccagcaaggagaatgccagattgagtcttgggaaagactatggacatactggatcccaggcagagacttgtagcagggagaaagcctccacagaaaa<br>tccct	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	415	97	NA	intergenic
0	chr8	15097777	15098076	1001041	0	-	Yc1RG60; RIP_Alu_chr8_015_03	TCCCACATTTCAGTGTGAATTT	GGCATTTGGGATAGTTCCTG	SINE	Alu	Yc1	cattttaggggtggtttcttctgtagtcaaatgaaaactttggcaagtcttaacacccacaatataatacaatcttagttttaacctaatggagtataat<br>aaatgatgctatgttatcatattcttttcacttgcaggatgataacatttcatgtattctagctttcatgcatgattcctaagcttactggacttttgat<br>acctgcactttttcactggggtgttttcatttgggagcttttcttgagttaaatggagacaacaggagattgtcaaatccagttttgagcaaaacaaatt<br>ttggattaagaaaagaactacatctttgtatttaaaacagtggcatctgatttataaggtggcatttgggatagttcctgccttt<font color="green"><u>AAAAAATCGAAGCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAAATCGAAGCCT</u></font>aaggatgtataaaacccattataaatttataaagagtagctattagcttgtgttaagtctcatttgctataaacatacagtttaa<br>atgacttgttataaattcacactgaaatgtgggaggtaagttttttttagatgaaaaatcggttgtcgtaagaccgagtattatacttgaacataccaaa<br>tggcaacatttcagagtaatcctgcagagagacgtttagttgccttatagaagtatttcactggggtggcacactaatggaatttgagctccaatcaggc<br>acggactcttgtcaccaaagggttaaaaatacaacccatcattttagcattgtgaaagaggaggctgatgacagcaagaaacaaacttgcaggagacaaa<br>	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	551	216	NA	intron:SGCZ:NM:139167:1/8
0	chrX	44189868	44190180	1001042	0	-	Yc1RG99;Yc2NBC19; RIP_Alu_chrX_044_01	AAAGCACTTGGTACAGAATCAGC;GCTTAAAGCACTTGGTACAGA	CCATGGCGAAGTTAATGAGAAGT;TGGCGAAGTTAATGAGAAGT	SINE	Alu	Yc1	cctcctagacttaagcaatcctttcacttccacttcccccgtaactgggactacaggcatgtggcaccacaccaggctaatttaatttttttttttttaa<br>aaaagagacagggtctcactatgttacctaggttggtctggaattcctggcaacatctggaattcctggcaacaagccgtcctcctgccttggcctccca<br>aagtgttggaactacaggcgtgagctactgcacctggctgcctatgtcttgtaaagcattaccctataaagctattattaaattgattacatgtcttgcc<br>actgatagggtttgataaaagggatttaatgatacatcccctccaaggttctcataaagcttaaagcacttggtacagaatcagctt<font color="green"><u>AAGAAATGGTGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGAAATGGTGTT</u></font>attacttctcattaacttcgccatgggctgcattactagtaagtggcaaaacctcaattggaatcaagtttgta<br>actgcagttacagaattccttctcttcttgcccaaattctagcctcaaacagtgaggggacaggctccttatattagctgggagttggtccctcatgtca<br>tgtcccagactccttgattctcacaactctgcctgctcttctaactctactatcttcatcaggcacaaatcatgtgaacccatcaacatttgaaatttga<br>cattttaatccttaaaccaatgcacagaggactttcataattatgatttgttttattaagttgtcatattgtctttcagatatggcgcttctgggataac<br>aggaactaggtaa	UCSC;UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA;NA	60;NA	390;NA	64;NA	NA;NA	intergenic
0	chr7	104402451	104402770	1001043	0	+	Yc2NBC5; Yc2NBC1; RIP_Alu_chr7_104_01	ACATAGTGGGCATTCAAGAG	CTTAATGTTTCCATTTCTCCA	SINE	Alu	Yc2	tagagttagggctgactgagttggggagtgggtggagtgtaaaatggcagcttgaccaggctgggccatagccactcatctgaccactttatctctcacc<br>tcttcccccactttggccttgggaaggaggcatcaaggagagtgtgaaggaccaaggaatgctagggatagttggtggccacttctcgacagtaaccctt<br>tacctaatgtatcccagctgatatttctcaaaacatgttgctatgcctcactcattaggttccactccatggggacagggagcatgtgtgtcttgttctc<br>aatacctgacacatagtgggcattcaagagtacttgaaggaatacagggaggaataattgattttcataactatcttagggatt<font color="green"><u>AGAAAAATCAAATGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAATCAAATGTA</u></font>actaatttccattttacagatggagaaatggaaacattaaggttttaagttgtttgggaggccg<br>aggcaggcggatcacaaggtcaggagatcaagactatcctggccaacatggtgaaacccccgtctctactacaaatacaaaaaaattagccaggaatggc<br>agcgtgcacctctagtcccagctactcgggaggctgaggcaggagaattgcttgaatccaggaggcggaggttgcagtgagctgagattgagccactgta<br>ctccagcctagtgacagagcgagactccgtctcaaaaaaaaaaaaaaaagattttgtgggggccagttgcagtggctcatacctgtaatcccaacacttt<br>gggaggctgaggcgagtaga	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chr12	29171519	29171817	1001044	0	+	Yg6AH98; RIP_Alu_chr12_029_02	GCACCATCGATGAAATAAAT	ATGGTCAGAGAGCAGACATT	SINE	Alu	Yg6	ttttcctaatctagaagcttatattggggattttagatctttcttctttcctaaaatatgcattcaatgccataaatttgcctgtaagcactgcttttgc<br>tgcatgccacaaactttacccagttgtatttttattcatttagttcgaaataatgttaaatttctcttcaggtttcttctttgagccatgtgttatttag<br>aagtgtgttgtttaatctccgggtatcttggcattttccagctacctttctattattcatttctagtttaattctactatggtcagagagcagacattgt<br>atgatttctgtaccttgatatttgttgagtgtattttatggcccagaatgtgttctatcttggtgaatgttccatatgacctt<font color="green"><u>AAGAAGAACATGTATTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAAGAACATGTATTG</u></font>tactgttgttggataaagttgtccatagatatcaattatatttatttcatcgatggtgctactgagttcagatatgttcttatt<br>tattttctgcctgccaaatctgtctatttctgatagaggagtgtcaaaatctcttaactacaataggagagtcctccatttctctttgcagttctatcag<br>tttttgcctcatgtatttttacactatgttgttaggcacaaacatgttaaggattgtcatgtctttttgtagtagtgacattattattattatctaatat<br>ccctctctgttcctgattaactttccttgatctgaagtctgctttatctgaagttaataaagctaataccctttcttttgattagtgtttgcatggtat	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	497	181	NA	intergenic
0	chr14	44957916	44958217	1001045	0	-	Yi6AH110; RIP_Alu_chr14_044_01	AATCCTCTTACTTTTGCAAGATGC	TTAGTCTCATCTAGGGATGCCAAT	SINE	Alu	Yi6	catacagaaagacataaaaagcacaccagattggctacagcttgagactagcctcacaaatgctttttttcaattaatcaaaattttacagaggatataa<br>acaggaatctttattattcattcaacaggtttgcacagagacagagaggccagaagtctaactggtaagcaattcttacctttttgccaacatgtcaggt<br>tttggagttcctcttccctgagtggccctagcaaccactgagaggcaagctgcatcacaatggaaaatcacagaaccacaagcaaaatcctcttactttt<br>gcaagatgctacccagggggtggcatggggtaaccaaattaacattttccattctggccagagcaaaatatgtgtgctttaaat<font color="green"><u>AAAAATATTGAAATCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAATATTGAAATCT</u></font>ttttagaagcttctgcatatcaattggcatccctagatgagactaatttgggagccatctttccttttttactttttttttt<br>ttaatgcacttcaatgcactgttgttcatttggaatgttccactgtaagttacctttagtaatgttttgccatttccgtaagactttgctccctcccagg<br>cctaacatataagccagaaggaactcagttttccagaaattaagaattctatttttaactaaaatatcggctttgctttcaggttccgttagtgaactta<br>gccaatgattttttttctacctaagcatgcaagaaaaatgaaacaaaggggtagaacacaaaaatccctgtgaattttcaaaagccaaattttacagccc<br>ct	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	479	161	NA	intergenic
0	chr15	32529049	32529311	1001046	0	+	Yi6AH65; RIP_Alu_chr15_032_02	CAATGCATGTTTAACCTGTG	TCTACCATTCACAGCAAGTG	SINE	Alu	Yi6	cagcttttatattgcagtttttgtagttatgttttttattctgttcccaggtatcatagaaatggagttcctagttctagagtatccttttctataaata<br>gagtaaaatgcagtttatttaataagagatgttggcactttgggcagaaagggagtggtaggcacgtggtacttctctttcatctggacatattccttaa<br>ttttaccttctttttttcctttctgtgccatgactcctgatcaatcaaatagacaactgaaattattcacagatctgaaatgttttattatttctgttac<br>cagatttgtagctcttcaatgcatgtttaacctgtgcacatagtctaattttcactgctggtgttgacagaaaaaaatatttc<font color="green"><u>AAAAATGGAAGCTGAGG<br></u></font><font color="red">GAGGCCGAGGCGGGCGAATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGG<br>GCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATTGCGC<br>CACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGGAAGCTGAGG</u></font>attgtaacataatgtaggta<br>tataatggcaatggcactatttctgcttttcctgtgctttgggtctacctgaagagtagtgtgcacttgctgtgaatggtagagcccacctacattaggc<br>tgatgatttattgttgaagtcaaaaaaactagtgaaattttactgagtagactcttgatcagcagggtagcagatgtctcccagaatattttgcttctca<br>aatttacagggcttctacctttcatagaaaaccatcctcacctctgactcatgtgacttatcttcgggtactgccttctcttggcagtctttgggactac<br>ctcaaagcagaattcatcctaccctgctcagtgttccctcgactcttcttccattatatggta	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	467	187	NA	intergenic
0	chr16	81040036	81040348	1001047	0	-	Yg6AH55; RIP_Alu_chr16_081_02	ATGGCAAGGAATGATATGAG	CCTGGAATGTTCTTTCCTTA	SINE	Alu	Yg6	tctataaactctctattggactgtgagtcccacattagatcagcaacatatgagcagcatggttccacccctacctgttcatttcaatcattcattcctt<br>ccttcattcatttgtttattcaatagatattcactggtcggctcctatatgcaggcattgttctaagtactagacatacagcaggaaaccaaccaaccaa<br>acaaacaaaacctgtcctaacagagctcacattctctctggaggagatagatagtacacaaatacttgtcatatgtcagatggcaaggaatgatatgagg<br>aaaggcagggaagatagacagatttctaggaataagtaaggcatggagcatgcaattattaaaatgtggcactggaagtcctcatt<font color="green"><u>AAGAAGAGTTAGGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAGAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGAAGAGTTAGGG</u></font>aggtgtgcaagctatgagattatctaaggaaagaacattccaggcaaaggcagcagtaagcacggctggagca<br>gggtggacatggggagagaagcaggagttgaggtcagggagttcatggtaagctgaactcatggcctatgcctgtgtctatacaatacctgatacatgga<br>tgaaagaaagtaaaaacataccattgatggaatgttctcatccctctggttcacgtaaacagatagaaagacaaggcatggtttagcagaagatattacc<br>aatacgatatacctaacaacttgtattcggaatatattaaaagctctagaaattcaataagaaaagggcaggcagcctaataaagaaatggcaatagact<br>tgaacaaacactt	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	492	165	NA	intergenic
0	chr1	79174115	79174418	1001048	0	+	Yi6AH97; RIP_Alu_chr1_079_02	TATTGTCAGCCAAAATCCTC	CCTCATATGAATATGGATGGA	SINE	Alu	Yi6	tcaatagctgaggcaaaccaccatggctcacgtataactgtgtaacaaacctgcatgctgtgcacgtttcccagagttaagcaaaattaaaaaaaaaaaa<br>acaaacctactttaaaaaaatctctatttttcttcctcacacaatcacaaattttgtctcatgatgaagaatatgatggattattgaggaagaaatatta<br>aaggaactgcaaatatagtgactttgctgtataaggagtagtaaaatcagagctcttttgtatattttcattagaatctcaacaatttcagacagtaaca<br>aaagttggaggtaagacaaggacccagatattgtcagccaaaatcctccccaggtatttataacagaatggaaatctcaagt<font color="green"><u>AAGAATATGGATATTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAATATGGATATTCTG</u></font>tatactgtacatacatcaaatgtttttataggaaaccacatgttacatgtacatatgacataatcaaatgcatgataa<br>atatttattgcaaattcattgatatattgtctgttagattgttaaagtcctaccatttgaatcatatgcagcttttctctttggaaatatatttatgtag<br>tctccatccatattcatatgaggatgaatatgtttcatgttatatgaatcaaaaaagaaaactttgagagctgaaacaaaaccatgaaaataaaaaaagt<br>gaaattactttaatcaatatacatcataaatatattagcttagagacaatttcatccatcattattgtgttttaaattatttataacaagtagagtgaac<br>attc	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	595	273	NA	intron:ELTD1:NM:022159:7/15
0	chr20	57156850	57157173	1001049	0	+	Yg6AH147; RIP_Alu_chr20_057_02	GCAAAGTCCCTGTTCAGTCC	CATGAGACCCAGAGTCAGCA	SINE	Alu	Yg6	tattagatcaataagaaagtatgactacatcatggaccctaattagaagagacgtcccttatactctctgaaatgcttgagaatgttctcctactaacct<br>agagcctgatggggccattgacgctaattgttaagtgccgttggtcaaggccaatgcatagtcttcgtttagttcctaagtcatttgtggtcggcccatc<br>caagacagggacacggacaatctcatcagagtaggctgggagggtttccatgatggaatggggctggcctctctgttgaggggggatatccaaggggtgc<br>acatgagctctgaggaccagtggcaaagtccctgttcagtccttgggaagcatcaccactgctacatttctgatgttctgaagatgggtt<font color="green"><u>AGAACAGAGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGTGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAACAGAGC</u></font>gtgagagcaagcagggtgctgactctgggtctcatgtcttgaggctcaattccatcctgtcaccca<br>gccaggagattcagaggtcctgcagcctcctacctcagacccacatacctggtgtgagttctgccctcctgaccacaacacccctgcaccttggacacag<br>cttaccacatccttccccagagcatcttgtgccttggagagcaggtgcagttgcagcgttctgggctgcgggcactcgagttcagccctggccagaggct<br>gtgaggggcagagccaggggatggtgtctccattggtaacgagggtctccatcccttccaggctggccgtgtctgtggccacagatgaataggatgggtg<br>cccatcttgatgggtcagacaagg	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	448	114	NA	intergenic
0	chr2	182064229	182064531	1001050	0	+	Yg6AH86; RIP_Alu_chr2_182_01	AACAAGCCTTGGTAGTGAAG	ACCCAAGTGTCCTCTGTATG	SINE	Alu	Yg6	catactaataattttgatttatactaaaagaatgaaataaaatgttcagataagaagtaaaagcaatcattaaatacctatgttctgtatattgtgtccc<br>aaattaagttgcataggcttggaaaacatttattgtatatatttcaaaacatatctttctcatttgaataatgatagctagaactttattatataacaga<br>tccaagcgtaatccaggaagagtctgaatctatatatgtgatagccagagattgaatatacccaagtgtcctctgtatggaaaaaaatttatctgggcct<br>ttttaatattttggctgaaaaggctcatctgtatttttcctaaatatttgccttaatctagatcactcttgctaataacaggtactgt<font color="green"><u>AAGAATTACATC<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACAAGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGAATTACATC</u></font>aaccacttcactaccaaggcttgttatttttttcatgtgttatgaagaatcaatatataggaaattctagagatgtaaccacagt<br>ggtggaagtataaacccagccctgattaaaataaattgctgtcttcccttcaatggctataaaatacttttccccactccttcttctcacatccctcttc<br>tcctcctcctcctctttctcttccttaccattcctgctcctctgttcctgtatgtatatattctgcacaaatctgactccagttattccaaaccaattgc<br>cattcttcacatgtgccatgctgcctattgcttccctgcccttgcacaggcatttccctgcctctaaattgcatttccccttttcttcacctgtctatga<br>cct	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	481	166	NA	intron:ITGA4:NM:000885:10/28
0	chr4	101463875	101464133	1001051	0	-	Yg6AH28; RIP_Alu_chr4_101_01	TGACCCTAGTTTGGGTCTAA	TCATGCCTTCTCCATTTAGT	SINE	Alu	Yg6	ttctagtacaagaaatgtagttccaggcaaagcatatttccttaggttaaacatataaaaatctgaatttttagtaaaaaaaaaacaataataaattgaa<br>gggtaatatattttgtcagtattttttactataaaatttatttaccttacaagctgtatgttaccactgtcatctgcttgatttgcaagcatccagctta<br>ggtgtcatttttccagaatagagcgttagtatgaaagtgccctgtgctcatgccttctccatttagtaggcaagaaaactaccatttccaccttaaatct<br>caggattattttaaattaaaggtaattaaaaaatgcaaagtgtcttgaattcctcaatagaaatgtgctacatgactgtgaggttcataattttt<font color="green"><u>AAGAA<br></u></font><font color="red">GGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATG<br>GTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTG<br>CACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAA</u></font>tttaggcccctttttagcagcctaatatctgtcatg<br>agaagagaaaaggattgatttagacccaaactagggtcattatgggcagcagtatgatcatttgactggaggtttcagaaattcttgtttgaagggtaag<br>aatgcagaactgccactgctaattagataccaatataacaatagaaaacaacagctgtgggccaggcacagtagctcatatttgtaatcccaacactttg<br>ggaagcaaaggtggcaagatggcttgaggcctggagttccagataagcctgggcaatatagtgagaccttgcctctagaaaaaatttaaaaattagctga<br>atgttgtgacacgcacttgtagttccaaatactcgagagaatgaggtggaagatttgct	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	492	218	NA	intergenic
0	chr5	20054668	20054963	1001052	0	-	Yg6AH35; RIP_Alu_chr5_020_01	AATACCAAGGCACAGTTCAC	CAGGATTTTGTTTCCTATGG	SINE	Alu	Yg6	ccagcaagaggcaaattggcccccatgatccaatcacctcccacaaggcccttcctccaacattggggggttacaatttgacatgagagttgagtgggga<br>cacaaatccaaaccatatcaatatgctattttataatgactctgtgttaccatatatcatccgtaaaaagtatgcagatctcattaatttagtagtcatt<br>cttctatgtcaactgtaagcaaacatttcttaacattagtgagtctattttgtgctttaaaagatagtatcattcttattttattgtctcactataagta<br>ctacaattctcactccttttgtagtgatttcatggtgcttaattccatgaaaataccaaggcacagttcacattctcaggttcatt<font color="green"><u>AAGAATGCCTTATT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGATGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAGA<br>ATGCCTTATT</u></font>ctcagagaactctcttaagggttttgtatttaaagtaccacaactgtttttaccagatctgaatgttccagttattcatttttattccat<br>aggaaacaaaatcctgattcttctcactttcaatattaattgaatctataaccttaaagaattatttgggaagccaattctataaaagtcatgcagtcat<br>agatatctcatattttttatcattttcttaagaatcttcacacccaaatatcaaagattgtttagaatacaaaatggcatactttatgtacatgaacttt<br>gtgtcaggctcattcaaaagcaaagctcaatgagggaaggttctctaagtggtaatgcttcacatgtttactccacactagacaaaagaatcttgt	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	465	155	NA	intergenic
0	chr5	99787376	99787677	1001053	0	+	Yg6AH30; pAlu5-99790231; RIP_Alu_chr5_099_03	TCCCTTTCTAACCTTGTGAA	TACTAGGGCCCATTTTATGA	SINE	Alu	Yg6	ttacttcttctcacctagaaaccatcaagctttaaatggtgtggcaaaaggagctgaaaattaaactgaccttctactgcatacccttaaattgacccag<br>gaggagccctagctgctattcccatgccacgcccctctccagcaggaagtagccagagtaagtcgacgcccaattccccgtaacagcagttaggaatttc<br>attcctgaggggggtgtttgttataggagataaaaataaattatttgggtagacagagtaaagagagtccccggcagaatactttccttctaacaaaaag<br>cagctcagaaatggctccctttctaaccttgtgaagttcaaagaaatcatttctcttctaacaaagaacaacctgaaaggctgt<font color="green"><u>AAAAACACAGATAAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAACACAGATAAAC</u></font>aacttgggcacagaaagaggtgggggagtctcctcggtaatcaccaaacttcacattcataaaatgggccctagtaaaaaca<br>atgggccttaataaccacattcctttccctttaagcacactaagataaggaagctaaaagcaggggggcaggggaggatccctgcagctgtgcaagaaga<br>tgagaagatgtctggaacagacacagaaactctccctcccagataagcaaaatagagcagcagaaactaagagtctacctatgtaatcaaggaattgggt<br>gagagctgatagaaaactctgtgctatgcacatagcacacctgattccaactaaatcttcaggccttaggaagataagacacccctcctcactagcccat<br>tt	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	479	161	NA	intergenic
0	chr5	177061523	177061814	1001054	0	-	Yi6AH63; RIP_Alu_chr5_177_01	AGTAGTGATGTGGACAGTGAAGG	ACCAGATAGCCTAAATCATCACTC	SINE	Alu	Yi6	catggtgaaggtctctgaaatgtcttctatgcttttcccccattgtcttggctattagcacttggcacctttttacgtatgcaaatttctgcagcctgct<br>tgaattcatcccctgaaaatggccttttctttccaggctgcaaaatttccaaacttttacactctgcttcccctttaaatataagttccaactttaggtc<br>atttctttgctcatgcatatgagtgtaggttgttagaagcaactgggtcacatcttgaatgctgtgctgcttagaaatttcttccaccagatagcctaaa<br>tcatcactctcaagttcaaagttccacagatccctatggcaggggcacaacgcagctatgcacccaggttctttgctaaggtataac<font color="green"><u>AAAAGTGACCTTT<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTGTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCAAGACTCTGTCTCAAAAAAAAAA</font><font color="green"><u>AAAAGTGA<br>CCTTT</u></font>gctccagttcccatcaagttcctcatttgcatttgagacctcatcagcctggccttcactgtccacatcactactggcattttgatctaaccatt<br>caaccagtctctaagaagttccaagctttccctcatcttcctgtcgttttctgagccctccacattcttgcaacctctgcctgttacccagttccaaagc<br>tgcttccacattttcagctatctttacagtaatgccccactccttggtaccaattttctgtattagtctgttcttgtattgctataaagaaatacctcag<br>agtaggtaattttatttattttttaaaatttatctatttatttttgagacagtctcactctgtcacccaggctggagtgcagtggcatgatc	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	494	190	NA	intergenic
0	chr6	163734221	163734222	1001055	0	+	Yg6AH99;1104685087387; RIP_Alu_chr6_163_01	CGGATAGGTTCTTGTTTGAG;NA	GCAACATTTAGCATTTTCAC;NA	SINE	Alu	Yg6	cagtgtctccatggaaacagctgggggctggtctgccagttcctatcatgtttgagaaccatgtgtaatcactttggaataggcagtatttttaaacttt<br>gcagtgagttgggtgaaagcttcagggatcaaatatttgaaaatgtctgaggagtaaaaatcatgccatgagataaagctttgtgagaaagagacaacgc<br>aaaacggtcacttttaatatttcaattctgagttaagacttcatatagatattttcatttattccttgccattttaatacagattcggataggttcttgt<br>ttgagaaaagaggttctgcaaagcttttctacttacatgaaactccatggtaatgacgctgtactggaaaaaagagaggttagat<font color="green"><u>AAAAGATGAGGTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATAAAAAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAGATGAGGTCTC</u></font>caagttttagagtgaaaatgctaaatgttgcttagattttgtgtgtatttagttgtatttaaaaaggtaaatgaga<br>aatcatttgtatactggtttctgaaagatatatttgagtttattaaaactttcagattttttgtactttactcaatgcatgactatttcactgaaattct<br>cacgtttttgttttggtgtcaggagaggcactgttttgacagtatttgcacatgggatttacctccatccttggatatatttctgtgacaccagagcagt<br>ttccatgaaggccctggaagggaaattttcaatcaacaaacagcaaaggatcccactgaccatgggcacactttttttcttaacaaatattattgctgat<br>gtcttatca	Other;Venter	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	60;NA	470;NA	146;NA	NA;NA	intergenic
0	chr6	39030177	39030480	1001056	0	+	Yg6AH160; RIP_Alu_chr6_039_01	TCAGAGGAAGGATGGGCTTA	TTCTCCCCTTGATTATTGGTTT	SINE	Alu	Yg6	ataacatacggatgggacagaatcaataagtttttgtagaaaaagaggagaagggaaactttggttatagatattgtcttgtactggtcaagatctgtag<br>tgagaaatttggagcagataaactctgcacagagtactgggtacatgggcaaagtggagaaagcagatgggtttagcacgagagcctttctaggagcctg<br>actactggaggagggaggtctcagaggaaggatgggcttaaaaagaacacctaaaaacaaacgaaagagaacaaatacataaaaccccacaaccacacaa<br>aagtagtagtgggaaaactgatataacaatatgtacagatgaaacattttaacattttaaataataagagaatggctcataattatagt<font color="green"><u>AATAAATTACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AATAAATTACA</u></font>gcatctcattaaaattggcaaatttatagaaacatatgaatttagaaaatttcctcagaaaaggtagaaaaccctgaataaacca<br>ataatcaaggggagaaaaagtagaagttttaaaattattacatcagcaaaggctctaggcttggataattttctgataagtcctttaaaactttcaagga<br>ctctcatatgctatattctgttccaaaagatggaaaaagagaatacattttcctttttcttttgagacaggctcccactctgtcacccaggctggagtgc<br>agtggtgcaatcatggctcactaaagccttgacctcccaggctcaagtgatcctcctacctcagccttccaagtagctgggactacaggcacacaccact<br>aatc	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	596	281	NA	intron:DNAH8:NM:001371:80/91
0	chr6	29080201	29080294	1001057	0	-	Yi6AH86; RIP_Alu_chr6_029_03	CCATTACTGCGGTAGTCTTC	CAGCTCTTATTTTGGGTGAG	SINE	Alu	Yi6	cttgggaagatgacctataagaaaacacttgaaggaggcaagattattagccatggagatcgcttaaggtgaagggagcagccaatggaaaggccctaag<br>atgaaagagaaggaaggtcggtatggctgaagattgagggagtgggagaagagtagaaggtgttgagaatgacacatcctgtagacttgtatgccactct<br>taagacttcagctcttattttgggtgagcaggagaggaagttagaagtcacgggcacattcagtagggccttgtatacctcggtaaggacttcaggtttt<br>attttaagtatgaaccactggagagttttcagcagagcgatgaaatgatccaactcaagttgtaaacggactactcagactgccctatt<font color="green"><u>AAGAAAGGAGG<br></u></font><font color="red">TGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAA<br>GGAGG</u></font>aaggcaaggattgaagaaaggagaccagttagaagactaccgcagtaatggaaaggaggggagatagcaggtgatggtggctcagacaagggtgg<br>tagccgttgagattgtattctggatatgttcacattttcagtttgacttcgtgcctcaggttctcagtgactccctattttttcctgtggtcacattcct<br>cttttcccttcaccaaatatgcagggaaacaagatgtgagatcacagcggtttagtgttgctaatgaaccccaaatccagggcagtgtttgacacattaa<br>gccaaacagtagcggcactgtgggtcaagaagggccctttggctggcaccaccaaaacatgtgttctccaaaggaggctggcatcaactggagc	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	358	243	NA	intron:ZNF311:NM:001010877:1/7
0	chr6	167802076	167802385	1001058	0	-	Yg6AH133; RIP_Alu_chr6_167_01	GAAAGAATCGTATGCTGAGG	CAGACCCACTTGCTGTCTAT	SINE	Alu	Yg6	tgtctcactgctgagtcaacctcaatggcttccagctctcagtctgaaatgacagcccaagctggggcccgcactccggcactgcagccagaagaaggga<br>ggtaagccctgggagccactcttgaggacacccctgcacagtggtacccctgtatccctggggcgtgtgttccaagacccgctgtggactcctgacacag<br>ccatactcccagacccacttgctgtctatcaggacacgcttccgtgcatgtcttccacccacaaactcaatgccttttttaacttaactaagcactcacc<br>atgcactgctgctgtagcttttgtcttttgagatgcaacagcaaaaccaacacaaatttcttttccttctttatagtttcactgat<font color="green"><u>AGAAGAGTCATTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AGAAGAGTCATTCC</u></font>tactgtagatctcagcagcctcagcatacgattctttcctttgcttattgagaactgacaccttttcactttatggc<br>ttcttcttggcagaaccaaatggccagtctcttgcggccattactgagtgaaccaggagtgacttgaacaatgggagacttgaactgggagactctgaca<br>gttgatctgataaccaaggtgactacaaagtgactcacgggcagggaacgtgcacagtgtggatccgctggacaaagggaggactcatctctggggaagg<br>agatgagggacagtgagagtcctcatcacactactcagaacagtgtgcaatttaaaacttgtggattgctgatttctggaattttccatttaatattttg<br>tggcctcag	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	553	229	NA	intergenic
0	chr9	6742051	6742356	1001059	0	+	Yg6AH138; RIP_Alu_chr9_006_01	TTGTTTGTGATACCAAAGGAGCTA	CTGGTTTTGAGAACGTTACCAATTT	SINE	Alu	Yg6	caactttagctgaatgatgagatctcaattatgcataatcagaacacttaaggaagatggaacaggatagttgttcacaatagtcagctcaaggccccta<br>gaaaatgtattataaagctgcaggctgaaaattgagctcattgatcagacagaataccttctggaagaatttgagtagaaaagaaaaatcagagcaatta<br>ggtagggagaaagggaaatattaaaatcagtgaatttgataaatttgaggtaaactacagaatgtgaaaatatcttacaaggcaacattttgttctgcag<br>aagaaagcccatgacaattaggttcttgtttgtgataccaaaggagctactgctggagagattaagcaagtcacattcctgagtt<font color="green"><u>AAAAATTAAGGAGGA<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAATTAAGGAGGA</u></font>acaggtaaaacaaaaaattggtaacgttctcaaaaccagggattttttttttttttccggtggagtttcgctcttgttg<br>cccaagctggaatgcaatggcatgatctcggcttactgcaatctccgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggttta<br>caggcatgcaccaccatgcctggctaattttgtatttttagtagagacggagtttcaccatgttggttaggctgatctcaaactcctgacctcaggagat<br>ccgtccacctcgccttccctggaattacagacgtaagccaccgcgctcagcctaaaaccagggattgttaaagcaacttccaaaaagttatattgtggtc<br>tctttc	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	435	114	NA	intron:KDM4C:NM:001146696:1/18
0	chrX	96081330	96081618	1001060	0	-	Yg6AH118; RIP_Alu_chrX_096_01	CACACACACACACAGGGTATAAGA	AGTACCCCATTTTTACAAGTGCAT	SINE	Alu	Yg6	cccagttaactagattctaaaacttttaactttaatggttattttcatactcatttattttgaaggatgacactactagacataaaactgaaatattagc<br>acttttattttcttagatgttaagatcacatttattagtagataaatactgtaaaaagagaaataacagtaaaaccttacttaatatgcacaagataaaa<br>cctttaaagttctatcccagaatcttcagtgctttttctgtgatatcactatctagcaaagaaaattcattgcagggccagtgcaatctgttgggttcat<br>tgctaccaaagtcctgtcgctggagtaccccatttttacaagtgcatctgtctcttctggccaaatttaaaaaatgaacacctttt<font color="green"><u>AAAAAATGTTACCT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAA</font><font color="green"><u>AAAAAATGTTA<br>CCT</u></font>aaagagtcaaactcttataccctgtgtgtgtgtgtgtgtgtatatgtgtgtgtgtgtgtatatacacacacacacatatacacacacacacacatat<br>atatatatacatatatacatacatatatatatacatatatatatatacatacatatatatatacatatatatatacatacacacacatatgcatatattg<br>cttaggccccactacattgttcattttcctttaatatccgattcaaattataaatatagtactctcagaactgcctcttacctgatataataatcatttc<br>tgataagcaaaaaatgttgtagaatagataagaagtaattttcagcagcagtgtccttcagcatattatatagaagatggtagacttca	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	416	113	NA	intron:DIAPH2:NM:007309:12/27
0	chrX	31487400	31487701	1001061	0	+	Yg6AH38; RIP_Alu_chrX_031_01	TCAAACAGTGTGAGGGTTCG	TTTCCACCTCCCTACTTCTCAA	SINE	Alu	Yg6	ttacaggagagacaaaattaccacatcattcccattatcagaagaaataattcaaattaagaaaaattagaaataaaaatgaagagatgacactgaagaa<br>tatctcaccactggaagatgactttcatctacagtgatctctctataaagcaaagatacttttcagctattattcagtaagtgagtccaacagtttcctc<br>tgatattgtgaatttaattagtaggcaatttgctcatgaaatcagaatctagcccttcccttgctgggttgctggatctgtgtattcctatattcttctc<br>tagctattgcctcatttctcaaattcctttcatgtcttcatctccattccttatttccacctccctacttctcaactcaccaccat<font color="green"><u>AAGACTTCTTGGCT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGACTTCTTGGCT</u></font>ctggttccagtgtaaattctttgattgcatcatcatgaacctcttacttgaggttagggctcagcgccccgaaccctcacactg<br>tttgagggtcaactgtataacactttccctaattcccaactcaccacaataagacttcttggctctggttccactgtaaattctttgaggcatcatcatg<br>aacctcttacttgctgaaaactccaagaaatagtgttcacacctagctttttcagctgcctggtagtccctgacactgccagccacttccttgtctttga<br>gactttctccttgctcaggttcctagtcattcttctcctttgtagcctgccattttctggccacctgcttagctcctacaggaaacacttcataagtgtt<br>gt	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	452	136	NA	intron:DMD:NM:004010:55/79
0	chrX	65443788	65444080	1001062	0	-	Yi6AH124; RIP_Alu_chrX_065_01	TGTCATTTGTTTGTGTCCTCTCTTA	ATAATAAACAGAGAGCCAAATCGTG	SINE	Alu	Yi6	cctttgaagaccagcgcaagacaaggatgccctctctcaccaatcctattcaacatagtattggaagttctggccagagcaatcaggtgagagaaagaaa<br>tacagggtattcaaataggaagagagggagtcaaattgtctctgtttgcagatgacatgattatatatttagaaaacccggtcatctcagcccaaaatcc<br>cctcaagctgataaggaacttcagcgaagtctcaggatacaaaatcaaagtgcaaaaatcacaagcattcttatggaccaataataaacagagagccaaa<br>tcgtgagtcaacttgcattcacagttgctgcaaggagaataaaatacctaggaatacaacttacaagggatgtgaaggacctcttt<font color="green"><u>AAGAACTACAAACC<br></u></font><font color="red">TGGGCCGGGCACAGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACGAAGTCAGGAGATCAAGACCATCCTGGCTAACAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTGCCAGCTACTCCAGCTGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTTCGTCTCAAAAAA</font><font color="green"><u>AAGAACT<br>ACAAACC</u></font>actgctcaagcaaataagagaggacacaaacaaatgacaaaacatttcatgctcatggataggaagaatcagtgtcgtgaaaactgccatact<br>ccccatactccccaaactaatttatagattcaatgttatccccatcaagctacaattgactttcttcacagaattagaaaaaaaactactttaaatttca<br>tatggaaccaaaaaagagtacatatagcctagacaatcctgagcaaaaagaacaaagctggaggcatgaccctacctgaattcaaactatactacaaggc<br>tatggtaaccaaaacagcattattctggtaccaaaacagatatatagaccaatggaacagaacagaggcctcagaaataacaccacacatcca	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	466	159	NA	intergenic
0	chr1	87610141	87610418	1001063	0	-	Ye5AH20; RIP_Alu_chr1_087_01	GAAATGATTCCAGGTTGAGA	CCGGATGGAAGATAATGTAA	SINE	Alu	Ye5	caaggttattccattttctccagccaatgacaggaacggatgaagttaaagattgggggtgggagggaattaacaaggtagtaggagaaaccaccatagg<br>atcctgcccaggtaggatgggaaataaagcccagaaagggcaggaggactgggagagtagacagggtcaaaggaatgactgtgactctgaggcttggtgg<br>gagcagcctttgcaggagagaaggaaaggacaaggtggagagtaagagatggtgactagggacgggaatgctgctgctggagttttcaaagcagaagcag<br>ctctgggtgtagcagaacagacaggagaccaggaagagagggactggctgagagccggatggaagataatgtaatcagaggtcatgaaag<font color="green"><u>TGGTGAACAG<br></u></font><font color="red">CCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTAAAACCCCGTCTCTACTAAAAATACAAAA<br>AATTAGCCGGGCGAGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCGGGGGGCGGAGCCTGCAGTGAGC<br>CGAGATCGCGCCACTGCACTCCAGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAAAAGAAAA</font><font color="green"><u>TGGTGAACAG</u></font>aaaccccaaaac<br>acagacataaactgctttctgggcccaagacccacgttaatgaaaattaacagccttaaaatttatcaatgggtcctgttgcttgcaggatggaattcta<br>actcctcatcacataagacctttatgatctttcagtgtcacctcatctcccagcacaccgccacccaggcccttcactcttctactgaaccactttcttc<br>catgtgcacacgctgatttctcaacctggaatcatttccctacacctttcctcaaaggactgttaatgagttttcagaggtaagccctattcctctcctc<br>tggagaaccttccctgagtgcccagtctgagttgaatgtcccccttcccactacccaatatctccccctgaactccag	UCSC	<UL><LI>Salem AH, Ray DA, Hedges DJ, Jurka J, Batzer MA. Analysis of the human Alu Ye lineage. BMC Evol Biol. 2005 Feb 22;5(1):18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15725352">PMID:15725352</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr11	61946506	61946507	1001064	0	+	Ya5NBC135; RIP_Alu_chr11_061_02	AATTAAGCTCATGGTAACCAGCAC	GACTCTCCTCTCTGGATTAGAAACAG	SINE	Alu	Ya5	agactcgggcaatccacaaatcttacactctagtccatcgatgaaaaggctgctatctctcgctgatgggcctggctgtttgcatctgggcagacccagc<br>cagccagagggctagccagcttggaaaggggcctggagacatgtgccttctctcctctgagttgcagcttctgcagagatctgcccgagctttcagcgtg<br>tcatcgaaaccctcctcatggacacaccctccagttatgaggctgccatggaacttttcagccctgatcaagacatgagggaggcaggggctcagctgaa<br>gaagctggtggacaccctcccccaaaagcccagagaaagcatcattaagctcatggtaaccagcacctttcacgtcacactggtt<font color="green"><u>AGAAGTGGCTTCCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCGGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGCAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAC</font><font color="green"><u>AGAAGTGGCTTCCCC</u></font>aagtggggctgcaggattgccccagttttcagacctgtttctaatccagagaggagagtcacagtgccactgtccccaggc<br>aggcagcacagtgatctttctagacatctccttcttttttttttttttttttttgagacagagtctcgctctgtcgcccagactagggtgcaatagcacg<br>atcttggcttactgcaacctccacctcccaggttcaagcgatctccggcctcagcctcttgagtagctgggattacaggcacccaccatcatgccgagct<br>aatttctgtatttttgtagagatggggtttcaccgtgtttgccaggctggtctcgaactcctgacctcaggtgatccacccgcctcagcctcccaaagtg<br>ctgg	Other	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	436	117	NA	intron:SCGB1A1:NM:003357:2/3
0	chr3	100209393	100209394	1001065	0	+	Yd3JXd19; RIP_Alu_chr3_100_01	ATCAGGTGCTCCAAATGTCTAGT	GCATGCCTCAGACACTTGTAAAT	SINE	Alu	Yd3	tgggggcaatatgggttggcaggcacaaacactagtgctgggggagaatcccatgggtgaccaccaggttcccagaggtgtgcctaggcatggagctggg<br>aaacctcctccctggccccaagttatctgcatggggaggggagtcagcctaaactcctaatgtaagagagtggagctccagatgcctggagatttgcctg<br>agcatggagcaaagaggaccccacttcacaacagtctttgtataggaaggactggctgggtcaggctgcttattcaggtgatcaggtgctccaaatgtct<br>agtgatctgcctgggtgtagacaggagagaacccaccctacaccaggatctttttattagccagatgctgtcacaggggctgtttacccatgttctcatg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>cccaggattttggatgtccttcacaattctggtggattccaattttccttcttgaattaaaactcacagagatgatcttt<br>atgtactgtcttgctatttacaagtgtctgaggcatgctaaaagcttctaatctgtcatctttgaaaaaaactttatttacaaaacttggtgccaacctg<br>caggctgcagtttgtcaactcctgatatatgctataatgttctggcagtaatccaccttggaaacctctaggagaatgagaaggaagatttttctattag<br>tatccctctcttctctgttcccctactcacccttcaaaaggcacttgactttttcttgccatcctctagcataatattcagtaagtctagtgtttgaaaa<br>tgagatacaggagggaagtt	Other	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID:15008405</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	precise insertion position unknown TSD unavailable	60	550	238	NA	intergenic
0	chr4	133839341	133839632	1001066	0	-	Yd6JXH34; RIP_Alu_chr4_133_02	GCCACCAAAATAAGCATTGTAAC	AATTGCACTTCCCAATTTCACT	SINE	Alu	Yd6	ctaatgttctttttttaagttttgtagttttattccttacaattatgtctttgatcaattctgagttactttgtgtgtgtgtgagtgtgtgtatgatgtt<br>ggatagggtctaaatgcaactgttttacatatgaaaatccagttatcccagcactatatgttggaagacaattacttccccatttaattgttttggcatt<br>ttttggcagtgctgaaagcaaagcttaaggagcaggacaagtcatttaggtgcctttgagaagaatactgaaaacgagaagctgcatgaagagggccacc<br>aaaataagcattgtaactttatatatccatagatgtatgtttttatttctgtactttcaattctatttaattgatctatgtctatc<font color="green"><u>AAAATGCAAGTATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG<br>CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATGCA<br>AGTATC</u></font>acactattttgattattgtatcttaccagtgaaattgggaagtgcaattccttctactttgttatttttcaagattgttttggttatttggagt<br>ctctattttcacgtgaattttagaatcagcttgttaattttacaaaaataggcaattgaaattttgatggagattacattgaatttgtagattaatttgg<br>agagtattacaatctaaagaacattttgtactcctattcataaacatggaatgtctttccatttacttagggtttctttaattttgttcaacaacgtttt<br>gcaatttttaatgtacaactctttcacctctttgattaaatttacttgtaagtattttattattttaatattattgtgaatagaataatttt	UCSC	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID:15008405</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	461	155	NA	intergenic
0	chr4	109327140	109327424	1001067	0	-	Yd6JXH44; RIP_Alu_chr4_109_01	CTATGACGTGTCCTGCCTTTT	AAAGTATGTCCACGTGGTTGG	SINE	Alu	Yd6	aaataacaagaaccttggatttcacaatcctccccgcatcttgactctagcgtgtctttgtactgacttcaagtctagacaaagcttaactttttcaacc<br>aattgtcaatccgaaaatctttgaatccgcctgtgacctataagtaaccccctcatactatgacgtgtcctgccttttggggccaaaccaatgtatacct<br>tgcatgtattgatctatgtctttgttgatatcttctgtctccctaaaatgtataaaacctaactgcagccagacatgcagctcacacctgtaattccaaa<br>actttgggaggccaaggcaaacggatcacttgagcccaggagtttgaggccaggctgggcaacatggcgagacctcgtctctac<font color="green"><u>AAAAAATACAAACATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG<br>CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATACAAACAT<br>T</u></font>agccaggcatggtggtgtgtgcctgtagtcccagctactcaggaaattgaggtgggcagatcacttgagcccacaaggtggaggatttagtaagccatg<br>atcgtgccactgcactccaaaaaattgtaacccaaccacgtggacatactttctcaggacctcttaatactgttccccaggcctgggtcactcatattgg<br>ctaagaataaacctctttaaatattttacagaatttggcttgtcatcaatagttttaagatcactctgtgagctttgcagacaatagcaggtacagcatg<br>gtagaaacagggagacctgttaggaggctatgataaatatctagatgaaaaatgattgcagcttgaactaggctggtgagaagta	UCSC	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID:15008405</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	695	394	NA	intergenic
0	chr5	77098082	77098375	1001068	0	-	Yd6JX35; pAlu5-77100929; RIP_Alu_chr5_077_02	GGAACACATCAAGAGACTGGAAA	TGTTGCTTTTAAACAAATCCTTGA	SINE	Alu	Yd6	tgtcatgattttaataaatcatttgttgcctgaaatacatttgtactctatgaaatttttgaagacctccaagtctactgaagtgtatttgaacttacat<br>tactagtatagtattataattttgatttccaaatctagaatgttaagttctgaagacgctgcactatatcaaagtatacaaagattttcttaaggccaaa<br>cagttcttcacgtcttttcaggaccaaagggatggtgtctgatatatcattgcttttcacagaattgtttttcaacaaatagacacttaatagatatttg<br>tcaattgagctaaggactggaggaaaccagaaaagggtttatgagggggaacacatcaagagactggaaataaaagtttgcttt<font color="green"><u>ATAAATAAAAGTGAGA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCT<br>CTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGGC<br>GGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAATAAATAAATAA</font><font color="green"><u>ATAAAT<br>AAAAGTGAGA</u></font>gacttagaaatggagaaaaaagagaaacaaccgctgttaagtaataaccaccctcaaatagacatttttcaggatagtatttttatttta<br>ttagagatataaaagatatgaaaatatatcaaggatttgtttaaaagcaacaattttacattttttaaactaggaagagactagtctattgtggaaaatt<br>taaaaattattacagttctgtcaaaaagtttttgtagtttacctagaattaactagaatagattcttaaattctagtttaatagaggggtctgtgtttgt<br>gtgtttaactgcctgctaagttacatagactaatccactccaggttattattattattattattttgcaacttaagaaaaatagtagggacata	UCSC	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID:15008405</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	505	195	NA	intron:TBCA:NM:004607:1/4
0	chr11	87558210	87558509	1001069	0	-	Yd6JX455; RIP_Alu_chr11_087_01	AACACATCTTGGTTTAAGTCACCA	AAGTTGAGCAAGTCTTCCAGAAA	SINE	Alu	Yd6	aattacctctgactagctccctacaacaacatgtgggaatttaagatgagatttgtgtggggacacagctaaatcacatcagggccctgggggtatacat<br>tttccaatagtttttctaggaagctgctgtgacattattatcaaaaattgataaagaaagtttaattgattaagctgtatatttatgttttgggaaccta<br>gcactttttaaaaagtagataaatagatctaagtatctcttcaaaatcaagttgctaattaaaagttttcaatgaaagactttgtaaaccaagttgagca<br>agtcttccagaaagtagaatacagagacaaaaagaatgaaacattgtttaaaaagtcttaatggtgtcctcgcgttagacttt<font color="green"><u>AAAATTTTGAGAGATTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCT<br>CTACTAAAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAG<br>GCGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAATTTTGAGAGATTG</u></font>agaacaaataaaaagagagagaaaattatcaaagaaataatgcaagaatgcttctgataaatgaaaagcatctgtgtccagat<br>gaaagagaccgcttggtgacttaaaccaagatgtgttaactgtaaaatttcaaaatttcaagaataaataaaaaataaatagtaaatccttaaagatttt<br>caagataattacatattaatttcattgattttaaaaccaatccatatatatcctagataatttagaaaagtataaagaagaaaaatgtttgttctagtta<br>tatgtataatcatgtacatatatttataaaatctggataattgatatatgtatgacatatatatgtaattttatatttagcttttttccaaataatacaa<br>	UCSC	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID:15008405</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	547	230	NA	intergenic
0	chr12	31665010	31665296	1001070	0	-	Yd6JXH14; RIP_Alu_chr12_031_01	CCTTTATGCACTTTTACCTTCC	GACCCCTTATCTTTGGAATGC	SINE	Alu	Yd6	agtctggaaggaaatcagtggaaatggagataattgcattgaggtggtaagattatgtaagccttagattttcttctttattgttatagcatcacaaaaa<br>ataaaaatgagaagaaaagaagagaattacaattttaatggtcagtgctcaatacttggtaggtacatgtactaagtgcagggaaggcaaaggggacact<br>cattacactctaattcactcagattcagagaaacttccaggccagaggagccacagatatttataattaataacctgttttgaccccttatctttggaat<br>gctgattaacatgaagcaataattactattaatatattagtctttcaatattgctgagactattcataagactgaaaacccttt<font color="green"><u>AAAAAGCTCCCACGAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAACGGCGTGAACCCGGAAGG<br>CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCCCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGCTCCCAC<br>GAC</u></font>acataaacataaggtgatattttaatctttatcataatgaatttatccaatccagggtttctaaaattgtcagtggtaatttggcctgggaatttat<br>cctagaatactctgacgagaactagattaattctggtctcccacttcacagtgttctgtttgccttgggactcattgtaggtaaaaaggatgtggagtct<br>ggaatagtctatgcttatgaaaccgcaagcaaaattcctagagtggccctgaattcaacccatcttcctgggactatgacactcatggctatgggtgaaa<br>ccaacctttgaacagtcattgcattccagtactcccataacttgctagtcattgcatttttttcaaggcctcttttgaagagttatt	UCSC	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID:15008405</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	830	527	NA	intergenic
0	chr10	9559835	9560127	1001071	0	-	pAlu10-9669962; RIP_Alu_chr10_009_01	NA	NA	SINE	Alu	Ya5	cctttttggagttttcctcagtaaccctttgtgagtggtcatctctttcctgccagggtcctcagggaggcagcatgccagttggcttgattcatcaaat<br>tccaaaccccttggggttgggtgaatgatggtcccctaaagatgtccaaatcctaatccctgaacatgtgaatattgtaacttatactttgcaaatgtga<br>ctaaggttcttgaaatgggaagataatcttatattatctgagtgggcctgctgtaatcacaagggtcttcataagagtgtggcaggaaggtcaacgtcaa<br>agagagagagatgtaaggacttaagcagaggtaggagaaaagagaagatgctgctgctcgctttaaagatggaggacgaggactcct<font color="green"><u>AAGAAATGCAGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAGAAAT<br>GCAGTC</u></font>agcctctagaagcttgagaatcaaggacccccggaagtaatgcagacctaccaacatccgggttttagacttatgaccttcagatatgtgagaa<br>aatacattatttttgttttaaaccactaaatttgcagtaatgtgttacaggaacagtaggaaactaataagtgtgcttttaaagacttcccttttcaaga<br>caattattctttttatcacatctctattctgctaaaaataatctgttttaatataattttttgtacctctcatttgaagtctatcctaaaaatgtagctt<br>ttaaacttgcattaaaacattcagtcatatttagagaaagatagagatggaaatgatagttacatcaaagaagttaatgccacagaaattcca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	46322200	46322201	1001072	0	+	pAlu10-49034251; RIP_Alu_chr10_046_02	NA	NA	SINE	Alu	Yb7	aaaaaaatgtttttttttctttaatttgtttcattaattgatttagtatgagcttatgttgcagagctgaaatctagttttggagtgttaacaaaattaa<br>gtttcccagactgtaaaagagggctggatcctggaccatggtcattttaccgaggcaattaatgtcagcagggacctctcaggggccttttcctttttcc<br>taggtaggtgtaaactcaactctgcaatctctgtattttttcctaacatctctatagttgttaacgactaggtaacattctctctggtggctgtaatgca<br>atttacttaaccattttcctattataagacatttagatgatttctatgaacatttttttaaaaaatcagattttttttgtcttttt<font color="green"><u>AAGAAAAAGAGGAT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAAAAAGAGGAT</u></font>ctagttcaccgatttctgaataagtttcttttgtgtggaacagatggaaatgttgggaaaaaaaagaaatctac<br>acttttctgttgtcctaatgaggcagtgaacttagttggatagcttgggtagtttatactacctattgatatatacccccaaacagaaatcttccttttt<br>ttttttttttttttgagatggagtcttgctctgttgcccaggctggagtgcagtggcgtgatctcggctcactgcaacctctgcctcctgggttcaagtg<br>attctcctgcctcagcctcccaagtagctgggactacaggagcccgccaccacgcctgactaatttttgtatttttagtagaggcagggtttcaccatat<br>tggccgggctgg	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FAM35B:NR:027632:1/7	
0	chr10	54530827	54531136	1001073	0	-	pAlu10-54753125; RIP_Alu_chr10_054_03	NA	NA	SINE	Alu	Ya5	aagcaatttctatattaaagttatgtaacagaaacatctgacttttacttggccttaatatattgtacattttcaataaaaatgattatttccaacttac<br>agttatgaatcactacctttaagcaattatcatatcttatgtaccctgggagccacacagtagcataagatgcaagggcatgagatatagctgatagaca<br>agttacataaacactcagaggcaaatagtcattcaagacaaaatttagactatagacagtaaatgttaaagaaatgaaaagtagatcaacccttcccttt<br>gatatgatatgattagaaaagtcttctaagaactggtgagattggacttggcccttaaagaagaagacagtgtctgataagcagaaatatt<font color="green"><u>GAAAATCGG<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>GAAAATCGGG</u></font>gtgcctccagattgataacacatagcttgatgatggatgttgtttagatcagggtagatgatactataatagaaaagatg<br>aaaatttcaataataacacaataatgctttatttgtcactcatagtgagtctgatgcagttcatgctgtctactttcttatagatacgttatctgaagta<br>tatgactcacaggtatttgggcagaagtgatcacaggacctgacaactgcaaacaaggctgggataaatcagaggtgcacttagaaagctgatggtcaat<br>cctggctaacatggtgaaacgccgtctctaccaaaagtacaaaaaattagccgggtgaggtggtgggcgcctgtagtcccagctactcaagaggctgagg<br>caggagaatgg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	58685233	58685565	1001074	0	-	pAlu10-58907542; RIP_Alu_chr10_058_01	NA	NA	SINE	Alu	Yb7	gtacaaccactatgtggagatcccttaaagaactaaaagtagatctagcatttgatccagcaatcacactactgggtatctacccagaggaaaaaagtca<br>ttacaggaaaaaagttagtggcacactcatatttatagcaactcaattcacaaaaatatggaaccagctcaaatgcccatcaatcaatgagtggataaag<br>aaaatgtggcatatatatatatatatttacatgccatggaatatacttagccatataaagaaatggaataatggcattcacagcaaactgaatggaattg<br>gagaccattattctaagtgggaataatgggaaaccaaacatcgtatttctcacttgtaagtgggagctaagttatgaggacacaaaggtat<font color="green"><u>AAGAATGAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGAT</u></font>acaatggactttgaggacttgggggaaagggtgagggggattgtgggatgaaagactg<br>cacattgggtatagtgtacagtgcttgggagatgggtgcaccaaaatctcggaaatcaccactaaagaacttattcatgtaaccatataccgcctgttcc<br>ccaaaaacctattgaaattaaaaaaaggatacatgcgactaccatataaccccccaaaacatcagtttcacatgaaataagtacaaacaggaattcagta<br>atacaccaatcatcaaaacaaaacaaaacgaaacaaaaaacaaagggaattaatgttggagtctttaaaatcgcatttttacacattttttaatttcata<br>ttttcaaaagaagacctatatgaccataaactg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	66521926	66522231	1001075	0	+	pAlu10-66744220; RIP_Alu_chr10_066_01	NA	NA	SINE	Alu	Ya5	atattctagaaaatttctcacttatagtctaataaaatagaagctatttacttttgtatctaagcatgcagagataatcataagcattaaaaagtcagga<br>aacaacaggtgctggagaggatgtggagaaataagaacacttttacactgttggtgggactgtaaactagttcaaacattgtggaagtcagtgtggagat<br>tcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccgaaggattataaatcatactgctataaagacacatg<br>cacatgtatgtttattgtggcactgttcacaatagcaaagacttggaaccaacccaagtgtccaacaatgatagactggatt<font color="green"><u>AAGAAAATGTGGCACATA<br></u></font><font color="red">GGCCGGGCGCGATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGGGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAAAATGTGGCACATA</u></font>tacaccatggaatactatgcagccataaaaatgatgagttcatgtcctttgcagggacatggatgaagctggaaac<br>catcattctcagcaaactatcttaaggacaaaaaaccaaacaccacatgttctcactaataggtgggaattgaacaataagaacacatggacacaggaag<br>gggaacgtcacacaccagggcctgttgtggggtgggggtaggagggagggatagcattaggagatatacctaatgctaaatgacgagttaatgggtgcag<br>cacactaacatggcacatatatacatatgtaacaaacctgcacgttgtgcacatgcaccctaaaacttaaagtataataatagtaaaattaaaaaaaaaa<br>gaatga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	91537379	91537700	1001076	0	-	pAlu10-91678525; RIP_Alu_chr10_091_01	NA	NA	SINE	Alu	Ya5	tatatactatatattcttttttctctttttatatataatataataattaatatagttcaatatattatatattataaaaaatatatatgatggaatacta<br>tgcagcaataaaaaggaatgaattaacagtatttgcagcgacctctatgagaccggagactattattctaagtgaagtaacgcaggaatggaaaatcaaa<br>catcctatgttctcactgatacgtaggagctaagctatgaggactcaaaggcataagaatgatacaatggactttagggacttgggggaaagggtgggag<br>aggggtgagggatagaagactacaaataggctgcagtgtatactgcttaggttatgggtgcaccaaaagcttacaaatcaccacta<font color="green"><u>AAGAACTTACTCAT<br></u></font><font color="red">GGACGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACTTACTCAT</u></font>ataaccaaacaccacctgtgtcccaataacctatagaaaaataaagtttaaaaaaaagaataga<br>aaacatttgccttgttacctactacccccccaaaaaaaactgggctaaggacatgaatagacaactctcaaaagaagatatacaaatgggcaacaaacat<br>attaaaaatgctcaacatcactaattatcagggaaatgcaaatcaaaaccacaatgcaatgctatcttactcctgcaagaatggccataatttaaaaatc<br>aaaaaataagagatgttggtgtgtacgtggtggaaagggaacacttttactctgctggtgggaatgtaaactagtacagccactatggaaaacagtgtgg<br>agattccttaaagaactaaaag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	92959209	92959530	1001077	0	+	pAlu10-93100347; RIP_Alu_chr10_092_02	NA	NA	SINE	Alu	Yb7	ttacattcaattcatttattcagaattccaaatatacatagtattttgtgttgcttagtaactttgtttaatgtgtttacattttatcattaatcctttt<br>ttctgacataatttcatttactcatctgttacctgactaatattttcccttagtctattaattatgttaattgatggaatcttccttgtagaagaagaga<br>actttacaagtgagggacttcctctttagacatctgtcagaagtcagaggatggggctgggcacagtggcacacacctgtaatcccagaacttttgggag<br>gctaaggtaggaggatcatttgagaccaggagtttgaaaccagcctggacagcatagtgaggctttgtctttacaaaaaaaattagattaaa<font color="green"><u>AAGAAAAA<br></u></font><font color="red">GGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACA<br>AGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCAACAGAGCGAGACTCCGTCTCGAAGAAAAA<br>AAAAGAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAAA</u></font>cgaagaaaggaattggaggatatctgctgataggagtagagtctcccagtttagtagctatcaatgggca<br>ttagggaatgaatgaatgaatgtggaaccaatatgcacgtgtcaactcaatgagattgacatgtggaaattgagattcccaaatgggtgtttttgtttgt<br>tgtttatttgttccttttaatctctaccatttgtgtcttttgccacttctggcatttagatggatagcagatcatagcattagacaatctataaagcttg<br>ggcaatttctaacatataaatgatttgcaacttcatatgccccactgctctcccttaacgcttccttcttcctagagggatgggcccccacctgtctgct<br>gggagatttggatgcccttccc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	131263887	131263925	1001078	0	+	pAlu10-100435311; RIP_Alu_chr10_131_01	NA	NA	SINE	Alu	Yf1	ttttttcagcaccacaccacacctattccaaaattgaccacatagttggaagtaaagctctcctcagcaaatgcaaaagaatagaaattttaacaaactg<br>tctctcagaccacagtgcaatcaaactagaactcaggattaagaaactcacccaaaactgctcaagtacatggaagctgaacaacctgctcctgaatgac<br>taccgggtacataatgaaatgaaggcagaaataaagatattctttgaaaccaatgagaacaaagacacaacataccagaatctctgggacacattcaaag<br>cagtgtaaagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatccaaaatcgacaccctaacatcccaattaa<font color="green"><u>AAGAACTAGAGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTCTACTAAAAAACACAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAACTAGAGAAG</u></font>gcaagagcaaacacattcaaaagctagcagaacgcaagaaataactaagatcagagcagaactgaaggaaataga<br>gacacaaaaaaccctcaaaaaatcaatgaatccaggagctggttttttgaaaagatcaacgaaattgatagactgctagcaagactaataaagaagaaaa<br>gggagaagaatcaaatagatgcaataaaaaatgacaaaggggatatcaccaccaaccccacagaaatacaaactaccatcagagaatactataaacacct<br>ctacgcaaataaactagaaaatctagaagaaatggataaattcctcgacacatacactctgccaagagtaaaccaggaagaagttgaatctctgaataga<br>ccaataacagga	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MGMT:NM:002412:2/5	
0	chr10	111026385	111026689	1001079	0	+	pAlu10-111167520; RIP_Alu_chr10_111_01	NA	NA	SINE	Alu	Yg6	atatttactgtctcactctttacaaaaagacattgcaatccctaccctagaaagaaaagtatacaagtaacacactattgtaatgtaacatattttaagt<br>ttttattaagatatgtatttaagtgatatattatttttcatttctactgtgttaagatgatattttataagtaagttacctcaacaactttcaaaaatat<br>ttatgttaagacatagttccttgggcaatgtacttgttacatgaaatgagattttatttgtttcaaatgtgtcttaacaagggaggactttggcataggg<br>ataggaaaatcagtgaagaagtttcttttctcttaggcctgactttggtatcatcacagatcctgaggatcataagaagccttaa<font color="green"><u>AATTTACCTACATTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AATTTACCTACATTA</u></font>atgctgatctaatgtttgaatcttcttcacactaaatgaccaccatttctttacatttcttcactgatagataatgcata<br>tattctcaaggaaaactaacctcttctggtaagccctgattgaaactaggcttggcattaagtcaaaatctgtttcaattcaccaggtcccaaaaagaat<br>agatttaattcctttcccatattagtgcacttaagtatttgacaactactctatcttcctgacttttaaaaaactggaacaacagaacattgtaagagac<br>ttatcaaagctgtctgaggattttatccacattttctcattaacgtctcacagtgacactagtcagaggaaagtattatcatccctcttagacaacttgt<br>ccaat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	119624274	119624595	1001080	0	-	pAlu10-119765412; RIP_Alu_chr10_119_01	NA	NA	SINE	Alu	Yb7	ttagaagccctgggatgagagaagaaacattcctgaggatcatgccctttaccaatattcaaatcacagcctaaattgggtggctgaggtgaccctctag<br>ggtatactagatctaagacatggcccgcaaatgatcagcattgcatcggaggccccagtgggctggtctggctggcagattacatggagaagatcactga<br>tgataggtaggtgactctcccagttctaatcaggccagggatgggacaagaggaggcaggagaacttaatgcccagccaagctcagtctttgtcccaacg<br>cagccagacagttcacattcagccagctgctactgatgaaatttgcatctgaggctggatactgattctcagaaggttttcctataaacac<font color="green"><u>AAAAGATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGATTC</u></font>accaatgagttaacactgccctccttgcccataccaatgggaatgattactcctgtgaaggaaattatt<br>ttattttctaaattaagctagattttattcaaaaaaaatttttttaccaattctcagagatcaaattactgagtctttttattgctttttgggtcactgg<br>gaaaaatagtctccagacttttcctactgagccgggtctaatcaaaatatccacttctgttcattagctgttcttcacaccatagagcaccttcagatgt<br>ttataaaccaacctcgaatctctctctcaggcttttttcctatttgagaagcccagttcccacagtgcccttgttgattaggggagggctgcatgtagcc<br>ttgctgggaccataaccccagc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	129455304	129455598	1001081	0	-	pAlu10-129494810; RIP_Alu_chr10_129_02	NA	NA	SINE	Alu	Ya5	gggggtatacaactaagttatattccagttagagctgccagatttagcaaataaaaatagaggaggatgccccccaaaatttgaatttcagatacacact<br>ttttttagtatgtcccaaatagtgaataaatattcaaatttaattggagtcctaaattttaactggcaattccaacttcaatacaagctcaagttaaaaa<br>aactacccttaagtttctctgtcctaatttttgtgtatatttacaaaataaatttactctttaaaatttgaatttctattccatttcaatctatcaaaat<br>ttgaatttaaaaaaatgaattttctttaaaaagtgaaactggaaaatgacaatatatttgatgatcataataaaaagttgaaaaatctt<font color="green"><u>AAAAAAAACTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAA<br>AAACTA</u></font>atgactgcagtaggaatttccacgggaagatttcctgagtggtcaagcaagacttttctgccagcattaatgttattttgacttgattttaagt<br>tgtttttgatatcaatgcttgtgactaaagtcacctcatatttcagtgccatactacaaagctgacagaaccttggcaacacgaaccctcgtattcactc<br>cctataccccactacatttgtttgctgtttcaagccactacgtttgtgctcatccagtccctgctaccaggaatgccttccacccagcccaggtggggaa<br>gcacaatttgcccttcaggactcaggagtaggggttgaaaccgccattgctgacataatccattccatcttgcttccaacctccaagttgtcctt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	130046343	130046659	1001082	0	+	pAlu10-130085857; RIP_Alu_chr10_130_01	NA	NA	SINE	Alu	Ya3	aggcaaagatttcatgacaaaaacatcaaaagcaattgcaaaaaaaccgaaaattgacaaatgggatctaaaccaaagagcttctgcacagcaaaagaaa<br>ctatcatcagcgcaaacagacaacctatggagtaagagaaaatttttgcaatctatcaatctgacaaaggtctaatatccagaatctacaaggaacttaa<br>gcaaatttacaagaaaaaaaacaaccccattaaaaagtgggcaaaggacattaacagacacttctcaaaagaagacatgcagtcaacaaacatattaaaa<br>aactcagcaccactgatcattagagaaatgccgatcaaaaccacaatgagataccatctcacaccagtcagaatggcaattattaa<font color="green"><u>AAAGTCAAGAAACA<br></u></font><font color="red">GGCCAGGTGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACAAGGTCAGGAGATCCAGACCATCCTGGCCAACATGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCAGGGCATGGTGGCGGGTGTCTGTAGTCCCAGCTACTTGGGTGGCTGAGGCAGGAGAATGG<br>CGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGACACTCTGTCTAAAAAAAAAAAAAGAAA<br>GAAAGAAAAAGAAAAAA</font><font color="green"><u>AAGTCAAGAAACA</u></font>aagatgttggcgaggctgtggagaaataggaacgcttttacactgttggtgggaaggtaaattagttcaa<br>ccattgtggaagacagtgtggcaattcctcaaagacctagaaccagaaataccatttgacccagcaatcccattactgggtatatacccaaaggaatata<br>aatcattctattataaagttacatacgtgtgtatgttcactgcagcactattcacaatagcaaatatatggaatcaacccaaatgcccataaatgataga<br>ctggttaaagaaaatgtggtacgtatacaccatggagtactatgcagccataaaaacgaacaagatcacatcctttgcagggacatagatggagctggaa<br>gccattatctttagca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	132748480	132748811	1001083	0	-	pAlu10-132787987; RIP_Alu_chr10_132_01	NA	NA	SINE	Alu	Ya5	tttgtcatcttttgtttcaaagtgcatagtatttagatagtctaaaatgtgctctgcaaatacttccttttggaaattttgataataaaagttataaaac<br>gctagaagtgcagtggttcttcacttttttttttttataatggacctcagagattgtgagaaaaatgagaatctacctagtcatactcatagcaacatgc<br>ataaaattgtgctttattgcaataggcatgaatatctttaataaagacaaatgactacattttgtaggccatcattttgctttcattttctcgggtgaaa<br>tttgattcccatatcttgtgaaataattgacacaaatctgatttgggacaagaaaaccgaaaaacaactttcgtaatgcacac<font color="green"><u>AAGAAAATGCGCGTGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGAAAAAAAAA<br>AAAAGAAAAAAAAAAAAAAGAAAAAAAAAAAA</font><font color="green"><u>AAGAAAATGCGCGTGAGG</u></font>gaggctcctagactgggctgaaccgggaggcgaaagtccggggtgctcag<br>ccttggccaccaggcacctttgacatccaattgatcttgcctttccttttgtggcagtaaatgttgaaaatgctgatttgcaaaaatttccatttgcgat<br>agacttagagcttttagaatttgatttgccaggcaggagtctattttaatctaggagctagagagttctctgagttcagcatgggtccagttgttttctt<br>tgttcttatgtcagtaagggcatcactgataagttcttctcactgacaccctgccagaaatcaacagcttagaaacacacacttcagtatgatgccatct<br>cagcaaactgaccatcacaggagcttgcagagt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	4997446	4997755	1001084	0	-	pAlu10-5107582; RIP_Alu_chr10_004_02	NA	NA	SINE	Alu	Y	ccagcttcaattgccaatttggtggcctctaaagctttacttttaggaacctgggggagtaaccataggtagtattttctgactaatgtgcctgagagtt<br>agttcaggcacaagtagcgacgttcacaaaaatcagcttttcctcctttcttggatgagttctgtatgtagaatcatgagcccatcccagtctccctggg<br>tctttcccagttagtaataaaggttgggcacagcaggaacttctgcagtcccagaaaaatcactgcttgaccactagtttggaagtgtccccaaaacaat<br>ttcaggttcagtcattttttggaaaaattaacaggatgcaacctatagttatagatataatcttaattatttttagtatggta<font color="green"><u>AAATTAACACAAGGAAT<br></u></font><font color="red">GGCCAGGCGTGGCGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGCTGGGCGGATCATGAGATCAGGAGATCAAGGCCATCCTGGTTAACAACT<br>CCATCTCTACTAAAAATAGAAAAAATTAGCCGGGCATGGTGGCAGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGGGGCAGGAGAATGACGTGAACCCA<br>GGAGGCGGAGCTTGCAGTGAGCTGAGGTCGCACCACTGCACTCCAGCCTGGACGACAAAGCGAGACTCCATCTCAGAAAAACAAAACAAAAACCAAACAA<br>ACAAAAAAAG</font><font color="green"><u>AAATTAACAC</u></font>tagccacatggaaggaaatatgaaggaatacagtgtaagctcctgtgattcctctcccaccatattgcacagaatgcact<br>gactttacccggaatcatattttgtcaatgtatgtgaactgttgtctacaagagatgctctctacatactccattactaagattttgtctgggactggtt<br>acattgactcactctgcttcgcaggcacaaaacttccaaaagtctccaaaaggaaagcaggtgcacagaaactccgcagtttgcacaagcagttacttac<br>agccaccattcttatcagttaggaaatagtgagaaatccaccttatcagataccagcaggtttatatgggaaacaggcctgtctatggatagcagtctat<br>tat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:AKR1C1:NM:001353:1/9	
0	chr10	46117913	46118212	1001085	0	-	pAlu10-48826771; pAlu10-46573022; RIP_Alu_chr10_046_03	NA	NA	SINE	Alu	Y	ttgagaccaacctaggcaacacagtgaaaccctgtctctacaaaaaaaaaaaaaaaaaaatacaaaaattatataggtggacatggtggtgctcacctgt<br>agtcccagctactcgggaggctgaggtcgaaggatttcttgagcccaggaggcagaggctgcagtgagtcgagataatgccactgcaatccagcctcagt<br>aacagagagaagccatttctgaaaaaaaaagaaaaaggacttatcattatctaattcaatatattctataataatcaaaaaataccattgaatgaatggg<br>gaagaaaattagatcaactgctgtgaagacacttgtttacttctgatcaagaaatagcagcagattatacctctgtggtattagtaaaaca<font color="green"><u>TATCTTTGC<br></u></font><font color="red">GCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATTGAAACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACCAAAAATACAAAAAATTAGCCAGGCATGGCGGCGTGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AGCCCAGGAGGGGGAGCTTGCAGTGAGCAGAGATTGCACCACTGCGCTCCAGCCTGGGTGACATCTCAAAAAAAAAAAAAATTAAATTAAAAAAAATATG<br></font><font color="green"><u>TATCTTTGC</u></font>tttggttccaaatatattttttaaatgtttgatacatggggacacatcacagtgtatattatcaaattactttgagttataaatagaagag<br>gaaaatcaaaataggaaaattacaatagccttaaatctctcagttgatgttaaaagtactaaattctggcagctagggtaaaattaatataataaaagaa<br>tagatacagcactcactttttctatacccccaagtattttaattatttctatatttggaaatgaattcataatctattagtcacattatttgaaatttca<br>aattataattttatttgtttcagataaaagcctcatcctttaaaaacatacctttgggtgaataaacaaagcaaactttctatgactttcatataaacta<br>	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	46254447	46254757	1001086	0	-	pAlu10-46709553; RIP_Alu_chr10_046_04	NA	NA	SINE	Alu	Y	aaaactcatagaaacagacagttaattggtagtcatcagaagctagggcatggggaaattgcagagatgtcggtcaaaagacacacaattccagttagcc<br>aggaggagtaagttcaaaaaattgattgcacatcatggtggctacggtgaataacaatacatttatatttgaaaattgccaatagagtagattttaagta<br>ttctcaccacacacacaaaatatagtaagtaggtgaagatgttgtagaggcccaaattcgggctcatgtacctgatgctcaattgaaaccaaacactgac<br>acaccaatgcttggggatagataaaagtttattccatttggccaaagtgagaacggggcaagatctctcagacatgtcttaacaataagacgaa<font color="green"><u>GCAGAG<br></u></font><font color="red">GGGGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACCGAGGCGGGCGGATTACGAGGTCAGGAGATGGAGACCATCCCGGCTAACAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTGCAGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAT</font><font color="green"><u>GCAGAG</u></font>aggatatttttgcagctagacagtaagagagggggagttttagggaaccaaggggaaagtctgtgtttctttaatctctgata<br>atatcctgagcaaccagacttctgggcctcagcagttagttgcaacatccttataggcattcattccttctgcaaatgttttttgttaccttaaagttat<br>cttctcctggttgacaaagaaatagtaaatcagcagtttgcaattgtattgtgagaacaagggatgttggcttttatgcaagcaagcaagggcctaattc<br>gaatttttgttatctcaatcactaaaaatgctgaggtattgacacctcaaggggtccgattacaaggtaatgcatataatgcgtatgtttagcttgattt<br>agccattccac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	48642918	48643245	1001087	0	+	pAlu10-48965220; RIP_Alu_chr10_046_05	NA	NA	SINE	Alu	Y	ttacttttctagaatctcattcttaattatagttttatatttttccttcaacaaagtcttaaaacccatgcagctggtgtctattatttacattctgtga<br>tgtattttatttgactttgtgtttttagtcttttcacagaaatccttttattgtgatcttcttgtccaaaagcacttatttcatatctcttttccatacc<br>tatcttcattagcaggttgcatttcagtttcttcagtccttttttagataatatattttactacatctgtcttcacaacactgtatacgctctgatgatc<br>aggtctcccttcttttttttttttaaattctcgtcctctttgggacccgtgacaaagtaaaaggcagatttttttctcacctgacttaa<font color="green"><u>AAGTAAAAAGG<br></u></font><font color="red">TGGCCGGGCGCAGTGGCTGATGCCTGTGATTCCAGCACTTTGGGAGGCTGAGAAGGGCGGATCGCGAGGTCAGGAGATCGAGACCATCCTGGCTAACATG<br>GTGAAACCCGTTCTCTACTAAAAATACAAAAAAAAAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAG<br>AATGGCGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGAGACAGAGTGAGACTCCATCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AAGTAAAAAGG</u></font>cttcatatgtttctcctctgattcttcttaggcccagcatttccaaaaacaaaatagtaca<br>caaaacattagttgtaatgatacttcaaaaggttcaaatactagtttttggctgctttctgactatatttttcttctaaagaaattttgttatgaagtat<br>tgaactattcagtatactttaatattttccaaataaagtttccaaactgatatttaacaatattctcttatattcaaacatattctgaactattttctgc<br>tgtgtctctagatcaatatttataaatctagattgttcatgtattttttttcctttgctaactttcaagatcatatcaaaaagcaccactgttgattcca<br>ttttttatgtttcattatttgaaactat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	111701656	111701657	1001088	0	-	pAlu11-6101314; RIP_Alu_chr11_111_01	NA	NA	SINE	Alu	Yb7	atcacaggcattcttatacaccaataacagacaaacagagagccaaatcatgagtgaactcccattcacaattgcttcaaagagaataaaatacctagga<br>atccaacttacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaaggaaataaaagaggatacaaacaaatggaagaacattccat<br>gctcatgggtaggaagaatcaatatcatgaaaatggccatactgcccaaggtaatttacagattcaatgccatccccatcaagctaccaatgactttctt<br>cacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccgcatcgccaaggcaatcctaagccaaaagaaca<font color="green"><u>AAGCTGGAGGCATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCCCGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGCTGGAGGCATC</u></font>acactacctgacttcaaactatactacaaggctacggtaaccaaaacagcatggtactggtaccaaaacagagatataga<br>tcaatggaacagaacagagccctcagaaataacgacgcatatctacaactatctgatctttgacaaacctgacaaaaacaagcaatggggaaaggattcc<br>ctatttaataaatggtgctgggaaaactggctagacagatgtagaaagctgaaactggatcccttccttacaccttatacaaaaatcaattcaagatgga<br>ttaaagacttaaacgttagacctaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggcacaggcaaggacttcatgtctaa<br>aactcc	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	27264463	27264778	1001089	0	-	pAlu11-27346935; RIP_Alu_chr11_027_01	NA	NA	SINE	Alu	Yb7	cgtctctactaaaaatacaaaaaattagccaggcgtgatggcacatgcctgtagtcccagctactcgggaggctgaggcaggagaatagcttgaacttgg<br>gaggtggaggttgcagggacccaagattgcatcactgcactccagcctgggcgacggagagagactccatctcaaaaaaacaaacaaaacaaaaaaaaac<br>aaaaacttgtgggctgtagtgcttagagtagtgcttagagtaaaatttccagccttagataattatattaagaaaaagagactgtgaattaaggagctaa<br>tcatctaatctaagaaaattaaatatcccagaaatagtagggaaaaaaaagaaaggtacgagacgcattaatgacacagtctt<font color="green"><u>AGAAAACAGAACACAAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAACAGAACACAAT</u></font>aaaaagaataagaaaaaaagaaaaactgctgttgtcttagtttcttcggaagcagactctgagatga<br>agatgagtgtgtatttcacccgtgaaggaaaagctccgtagagaagcaggtaagggggcagtgaaaactggccagggaaaaataggcaagggtaccattt<br>caggccaggtcccagggagaacagctcccatctgatcccacggtgggtttctgatgtgtgaagtacactcagcgttctttctcctggggcctccatactc<br>ccacagctgtcagttattggctaagggctaactggagtggatgtggattcctagacacttcagtgtctctgtgtaagtggccaaagtgcctccagtagcc<br>tgagggcagtcttctg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	31873304	31873618	1001090	0	-	pAlu11-31955758; RIP_Alu_chr11_031_02	NA	NA	SINE	Alu	Ye5	caggcacaaaaaaattaaggaaggtccagtctgtcttctcaagtaggtcataaactgattgcaatacaatgtgataaattctattaacacacacacagtg<br>caatgggttaaaagacggggtagtatttaattctgcagtgggcctgaaggacataggaggtcaaagaaaactatcaagagatgccttgggttgaagtttt<br>ctagcatatcaatgatcaatttaacattcatttgcatcttatggcccacaagctctccagagtcaaggaattagttctgctattcctaactttgctttag<br>gaacctccttgctattcttagctctcaaacaaagactgatgggaaaacagtggaagttctggaccttaagaacagattgaaccatt<font color="green"><u>AAAAAAAAGAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAACCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAATAAA<br>AAAATAAAAAATAAA</font><font color="green"><u>AAAAAAAAGAAAGA</u></font>aagaaagaacagattgagggatttttctcggaagttagacaaattttaaaactttcaacctaagagaaaag<br>agtcaggataaaaatcagcttcctccctccaacagaaagctagtgttacttggtagagatggaaaggaaagagacaacaaataccatcccaccccacttt<br>cacttttactctctccaaagaaataccatcaccccatcaagtgtaggatacactaagacgtaggggatggaggagactagggtcatctctgcatatttaa<br>acttgcatccagctacttgtcttgaattccactcctaccctaaggcctttggcaaactcagggaacttaaagttataacagattgactgacaacctccca<br>gctcacctgtaatcc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	33494264	33494572	1001091	0	-	pAlu11-33576739; RIP_Alu_chr11_033_01	NA	NA	SINE	Alu	Y	accacacagttgcaaagtgagccagtctaattctggggagcttagacaaatgtggctgattccatacctttgctaaaaaaaaagttgccaattcttcagc<br>cataggagaaattaaaggttggattggtcagaaagaaaacaggtgttttttgtttgtttgtttgttttaagactgaataattaggaagaaaaaggcagag<br>gagggaatttattttttccctcataacttcagagaattaggaataatggcttcacatatccatccctgtaaggaagataggagtaagaaaagttggtaga<br>cttctgggcctcaacttcttgctcagatatagctgtggtaatttggttgctcagatttctcgctcagatatagctgatcacatctc<font color="green"><u>AAGAATCACCTCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAATCACCTCCAG</u></font>gctgattggtagtggctgcctagactgttatgaagaattctaagcacagtcctggattggcagggaagggttctgg<br>gatcaattagcaatgtctgccttgggtgctgtagtacagaatggcagcatgaatttggacagatgtttagcatctctggggaaggtgatctctgaggttt<br>cttctagcatctggtccaactgcattcaatttcagatgaagctaggaccaataatgcttgagtgacttgccaaaggtctagcaccagaactagaggattc<br>cctctaatagtgttcttgctaccaacagatgcatcacgttacttttctggagcactgactcagagatagaggaggtaaaatgaagcaaggagaagcaaag<br>ggaggaggtt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	115255686	115255687	1001092	0	+	pAlu11-36736991; RIP_Alu_chr11_115_01	NA	NA	SINE	Alu	Yb7	tgcgtagaggtgtttatagtattctctgatggtagtttgtatttctgtgggattggtggttatatcccctttatcatttttttattgcatctatttgatt<br>cttctctcttttcttctttattagtcttgctagcagtctatcaattttgttgattttttcaaaaaatcagctcctggattcattgatattttgaagggtt<br>ttttgtgtctctatctccttcagttctgctctgatcttagttatttcttgccttctgctagcttttgaatgtgtttgctcttgcttctctagttctttta<br>attgtggtgttagggtgtcagttttagatctttcctgctttctcttgtgggcatttagtgctataaatttccctctacacactgcttta<font color="green"><u>AATGTGTCCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATGTGTCCCAG</u></font>gcgattctggtatgttgtgtgtttgttctcattggtttcaaagaacatctttatttctgccttcatttc<br>gttatgtaccctgtagtcattcaggagcaggttgttcagtttccatgtagttgagtggttttgagtgagtttcttaatcctgagttctagtttgattgca<br>ctgtggtctgagagacagttttttataatttctgttctttcacatttgctgaggagtgctttactaccaactatgtggtcaattttggaaaaagtacgat<br>gtggtgctgaaaagaatgtatattctgttgatttgtggtggagagttctgtagctgtccattgggtccgcttggtgtagagctgagttcaagtcctggat<br>atccttgttaactttctgtc	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	37623223	37623518	1001093	0	+	pAlu11-37705700; RIP_Alu_chr11_037_02	NA	NA	SINE	Alu	Yb7	tcagaccttggtagatagctgtaactgaaaccacaggaagtgaaatctcagataagagggtgcctctgtcatttttactgtagttgtgattgtaggatgc<br>caaataaaatcaattaaatttatatttatgtttagatgaccatggaccaggttgctttgagagagtaaaacataatcaggacatagtgacaactcttaaa<br>aagtgtgtaatttatcgagtgtaaagggaactgagagttagaaacatcttgtaagacagtgaaaacataagctcctacccacatttcataaacatatgtt<br>tatttctgcccaatatcttttgagagaatcatgtgtattaatttttattgctgctgtaaccaattacaacaaatttaatggcttaaaat<font color="green"><u>GTTATACTTCT<br></u></font><font color="red">CTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG<br>CCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATT<br>GCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GTTA<br>TACTTCT</u></font>gtaggacagaagttcagaataaatctcagtgttctaaaattaaggtctttcttgatcttggctccctctgaaggttcttggggtatatccatt<br>tcttatctttttcagttcctagaagccacctacactatgttcctcagcttccagccccttccagcaatggcttcattctgattactgtttccattattac<br>attttcttctctgaatctgaacctcctacttcatttttataagaattctttggttaggttgagctttcctgcataagctagcataacctcagatctcagg<br>attctcaactgaattggatctgccaagttccttttcccattcaaagtaacgtattcacaggttctggagattagaacatggccatcttgaaaaggt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	40963609	40963916	1001094	0	-	pAlu11-41046081; RIP_Alu_chr11_040_01	NA	NA	SINE	Alu	Yb7	cagagccttctgaatcaaacttcttttatatcatatcactttggctttatttttattttgaaacaatttcaaattcacagaaatgttgcaaatataatgt<br>ggaaaactttcatatatagtttaactagattcactagttttactcattttgctaatttgttttatagttggtctgtgtaaaatgtatataaatgcttaca<br>cgtatattaattattataataaaaattatatatgtagttgatttttaaataccttgagagtaggttaaatttatcatgctgttttaccccttgactctta<br>acaacagcacagttttcaagttcaaaatatttaagtgacacaatgaatactatctattctacaatccatctacttgtcaatttttt<font color="green"><u>AAAAATGTTCTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAATGTTCTTTA</u></font>tagctttctttttttaaccccaatattaccaaactacaagaaaataaaaaagaaaaagccatctttgttaccatagtt<br>atgataaggtacttttccccccctattaactgaaacacaaaacaacaaaaacaaaaaggaagataaatgtatctttcagtcactcagcggaagaaaaacc<br>catagactcataactgtgtaaattttaatgactggccattctttctgtaatgtgtacaaggaggaaaaaagcatgtatctcaaaagacaatagtgatgaa<br>actgaatgttactgttttcatgctaaactaagcccattaggtaagaatcctgagaagtatgaacaagccacacagaactcttgggtctcctccccctgct<br>tgtcttgc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	57719420	57719733	1001095	0	-	pAlu11-58213623; RIP_Alu_chr11_057_01	NA	NA	SINE	Alu	Yb9	attgaaaccaatatatctatatctatatctatatagatatagatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtactcccatgatcattgaagc<br>attattcgtagtagctgagatgtggaaataacctaaatgtccactgacatatgaagagatagagaaaatgtggtacagttagccctctgcctctgtgggt<br>tccacagtcatggattcaaccaatcttggatcaaaatagttgaaaaacaattgtgtctgtactgaacgtgtatagacttctttcttgtcattatttttta<br>aacaatacagtataacaactatttaaatagcacttatgaatagcatttacattgtattagggattataagtaatctagagatcattt<font color="green"><u>AAAGTATACAAGA<br></u></font><font color="red">AGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAGTATACAAGAAG</u></font>agatgtgcataggtttatatgcaaatattacatcattttatatcagggacttgagcatctgcagatttggg<br>tatttgtggaaggtcctggaacaaatcccctgatggacactgagggatgactgtatatattagaatattactcatcttttaaaggaaatcttaccatatg<br>caactacacagatgaaccttgaaaacattatgctaagtgaaataagtcagtcacagaaagaaaaatactacatgatttcactttaaggtatctaaaatag<br>tcaaactcataaaagcaaaaatagaatggtggttgccaggggcttggggccaggaagaatgaggaattgtagttcaataggtataaagttccagttatgc<br>aagatgaataaattct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	57977198	57977510	1001096	0	-	pAlu11-58471402; RIP_Alu_chr11_057_02	NA	NA	SINE	Alu	Yb7	caaatcaaaaccacaatgagataccatctcacaccatttagaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaatag<br>gaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcaattcctcagggatctagaacttgaaataccatttga<br>cccagccatcccattactgggtatatacccgaaggactataaatcatgctgctataaagacacatgcacacgtatgtttattgcggcactattcacaata<br>gcaaagacttggaaccaacccaaatgtccaacaatgatatcagtttattttaagcagataacaacttaactttgattgcatataaa<font color="green"><u>AATACTACACTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AATACTACACTTTT</u></font>atccccccccctccacattttaggtttatgtcataatttatttctttttatattgtgtatctttttataaatt<br>atcgtagctatagttattgatatagttttgtgtcttaacttttatactagagatataattgatgtccacatcatcattacaatatgatgttgtacttact<br>tttaccatgagtttttactttcatatgcttttatgctactaattaggatccttttatttcagcttgaagaactccctttatcattttatgtaagacaggt<br>ctagtatttatgaactcccttaatttttgtttgtttgggaaagttatctccttcatttctaaaggacaactttgccaggcagaatattcttcattggcag<br>gtttttgttcttt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	58565879	58566193	1001097	0	+	pAlu11-59060085; RIP_Alu_chr11_058_02	NA	NA	SINE	Alu	Yb7	cataaaattcggctttgggaaattcacagggatttttgtgttctacccatttgtttcatttttcttgtgtacctagataggaaaattcattggttaagtt<br>aatcaaaagaacctgagagtaaagtcagtattttatgtaaaactggaatccttaatttctgaaaaactgagttctttctggcttatacattaggactgga<br>aggcagagaagtcttacacaaatggcaaaatcttactaaagataacttagagtggaacattccaaatgaaaaacaatgcattgaactacatttaaaaatg<br>agggctctcagtaaagtcccttttggctaagaaccggtttggcactatagaatgtcaactgttatactctttggcacatttgt<font color="green"><u>AAGAATTCCAAGTGTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTCCAAGTGTTA</u></font>tttcaaaggaaatttacagatatgtttccaaattttctatgcttttttcttatttttgtaatgaaact<br>gggaaaaatttcaaaatggttatagatctgaaatatttggccctaagaaactaaagaaaatctttgccaactcctgctctgaggtttccagtcacaactg<br>ttcttagatatttcctattccagaagaaagaagactcttcaggcatctgatgaccaaaataaaagaaacattatgatggtggtggtggagtgttctgcta<br>caggcatgtgggaggctcacagaactcttaatattcacttttaattcattccaccagagaggaaatgcatgggttttggataggactctgtcatttatcc<br>ctgtaagaacttgag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	60864377	60864701	1001098	0	-	pAlu11-61358592; RIP_Alu_chr11_060_01	NA	NA	SINE	Alu	Yb7	ccaatttttaccaagcatctagtatatgctgaaaaggaaaaaaggcgactaagtcacagtctccaccttcaagaactcacagcctggggagaggctaggg<br>aagcagatacccataaattgaaaatttatgtgaggtggtaattacagtgatggagtccacactaggactggctgccaaccagctcagggtagtggggaga<br>tggagatcagggagagccttccaggtggggagacatcagagctgggcctctgtagaatggtaggagttagccaggccaaaaggaggctggacaaggaaag<br>aattttccaggccacagatactgcataagcaaagccagagatgatccatagcctggcaggtacaggagctggcgtgaagagaccat<font color="green"><u>AAGAGGAAGGCAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGGAAGGCAGGG</u></font>gatggctgggcgcggtggctcacgctcgtcatcccagcactttgggaggccgaggcgggc<br>agatcacttgaggtcaggagttcgaggccagcctggccaacatggtgaaaccacatctctactaaaaatacaaaaattagccgggcgtggtggcaggcgc<br>cttgtaatcccagctactcgggaggctgaggaaggagaatcacttaaacctgggcagcggagactgcagtgagccaagatcgcgccactgcattccagcc<br>tgggcaacagagtgagactctgcctcaaaaaataaataaataaataaaaaataaataaaagaaaataaaaaaaagaggaaggcagggatgatgggagatg<br>aaggtggggagtcagggagctatggt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DAK:NM:015533:5/18	
0	chr11	71539258	71539560	1001099	0	-	pAlu11-72084202; RIP_Alu_chr11_071_01	NA	NA	SINE	Alu	Yb7	aggcgtgagccaccgtgcccacccccacatttccttttcaattgtggcttaaatagtggctgtcctaagacttctgtcaaccacagacaattgttttctt<br>attttgatcctcttcaaaaggtggtttataatcaactataggattttgacaggttctcttgaatgcaggtttctgataagtttggagattgtgacgtcag<br>aatagaggaaaaactttcaggactcatggacagctgaaatgttcatgacgattaaacaggacaggagttaactgcatggaatgaacaaatagaagactga<br>agaaatgtttttgactttgcttaaaatgctgctgaaactttgttttgttttcagagtcaggaaaaattttgagctatttacacctttt<font color="green"><u>AACAATTCAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGAGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AACAATTCAGTA</u></font>aagtatacttctggcaacatatttggagcatatttgtttttttctacctgatttttccagaattaggaaactaggtgtgagtatt<br>cttaacttatagcaatatagttatttgcataagtgcaataagaatctgtttcttggccgggcgcagtggctcacgcctgtaatcccaacactttgggagg<br>ctgaggtgggtggatcacctgaggacaggagttcaagaccagcctggccaacatggcaaaaccctgtctctactaaaaataaataaataaaaattagctg<br>ggtgtggtggtgtgtgcctgtaatctcagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccgagatcgtg<br>cca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	73822720	73823054	1001100	0	+	pAlu11-74367669; RIP_Alu_chr11_073_01	NA	NA	SINE	Alu	Yb7	aaatattttatttatttatttattttatttttgagacagagtctggctctgttgcccaggctggaatgtagtagcacaatctgggctatctggaacctct<br>gcctcctgggttcaagatattctcctgcttcagcctcctgagtagctgggatcagattaacaagtattttaaaagattgtctcctaatcttaaatactgg<br>ctaaaatgctgagcaacaggaactctcatacactactgggtagaagtataagagaatcaatttattaaactgtttggtaataacttccaaaggcaaacat<br>aggcagaccctatgaccaagcaatttcacttctaggtgtatacccaacagaaatgcatataaaaacatcattattggaaatagctcaa<font color="green"><u>AAGTGGAAACAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTGGAAACAC</u></font>cccagatgtccatcaacagaagaacagataaataagtttgtagagtatttcta<br>aaacaaaatacttagcaatgaaaactaatgaaccacagctgtacatgaaaatatggttaaatctctgatatggttaggctttgtgtccacccaaatctca<br>tcttgaattataatccccaggtgttgagggagagatccggtgggaggtaattggatcttgggggcggttttcccccatgcctttctcgtgatagtgagtg<br>aattctcacgagagctgatggttttataaggggctcttctgctttccctctctgacttgctctctctcctgctgccttgtgaagaaggtgcttgcttccc<br>cttctgccgtggctgtaagtttcctgcggcctccc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	89774395	89774396	1001101	0	-	pAlu11-74692148; RIP_Alu_chr11_004_02	NA	NA	SINE	Alu	Ya5	aatctccttaagctgataagcaagttcagcaaagtctcaggatacaaaatcaatgtacaaaaatcacaagcattcttatacaccaacaacagacaaacag<br>agagccaaatcatgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaagga<br>gaactacaaaccactgctcaaggaaataaaagaggacacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaaatggcc<br>atactgcccaaggtaatttacagattcaatgccatccccatcaagctaccaatgactttcttcacagaattggaaaaaactacttta<font color="green"><u>AAGTTCATATGGA<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCCGCTAAAACA<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAAACCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAG<br>TTCATATGGA</u></font>accaaaaaagagcccgcatcgccaagtcaatcctaagccaaaaaaacaaagctggaggcatcacactacctgacttcaaactatactaca<br>aggctacagtaaccaaaacagcatggtactggtaccaaaacagagatatagatcaatggaacagaacagagccctcagaaataacgccgcataccaacaa<br>ctatctgatctttgacaaacctgagaaaaacaagcaatggggaaaggattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaag<br>ctgaaactggatcccttccttacaccttatacaaaaatcaattcaagatggattaaagatttaaacgttagacctaaaaccataaaaaccctagaag	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	92742464	92742766	1001102	0	+	pAlu11-93287245; RIP_Alu_chr11_092_03	NA	NA	SINE	Alu	Ye5	cccatttcataatgctgtcactttggggtttaggcttgacatatgtatttgttgtgggggacacaaacattcagtccttaatagtcactaaataagtcca<br>agccccaccctctaaaaaaacaagaggagaaatttggcaactgagtgaatgaaggaaaaaatatttcgtgtcaagaaatagaaagaaagtagtggcaaat<br>gcaaaaaaaaaaaaaagttgtttgaaattcccttattagtaataagtatttgttataagacagactttttacatttttaacaataagtgacaaattctgt<br>attttcctagcaaaaattagagatggtaaaaaatccaacatgaatgatttgacaccttttcttttgtttgttttccctaataggt<font color="green"><u>AAAGAATGGATTTAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTTCTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACGGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAGAATGGATTTAC</u></font>tttttttttctcagaatgaagatgtacaaatgaaagaagccttatttgctgtactttaaaatgaataacatttttaaatatg<br>tttgtctccccactttttaaaaggaatttagagcaaagtcaagagaatgggacaagcaagagatattatatcagactcatctgatttctttagatgctca<br>acaaaaattattatctgagaagtgtaatcagtttcaggtaagttatctaatactattctctaaatcaaaagcagaagttaaatattggtatctttaccat<br>tcaccagtaatctatttacaaacagacatgccaactaagaaaaaacgagagtaggtccaaaggtgggtacagtcacaagtgcatagaatatctgttaatg<br>gtg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CCDC67:NM:181645:5/14	
0	chr11	98781547	98781873	1001103	0	+	pAlu11-99310323; RIP_Alu_chr11_098_01	NA	NA	SINE	Alu	Yb7	ttgagttaaatctgcttggtgttttataaccttgcacttgactattggtatctctagatttaggaagttattatccctttgactaacattctatccctct<br>ttttctaccttctctttgaagacagtaactcttaggtttgcctttttgaggttattttctagatcctatagctgtgcttcattgttttagttatttattc<br>ttatctctcttctttgtgtattttcaagcaacctcttcaagctcactaattctttcttctgcttgatcgtttcttctattaaaggactctgatatattct<br>tcagtatgccaattgcatttttcacctacaggatttctgcttgatttttaaaaattatttcaatctctttgttaaatttacctgatagaattct<font color="green"><u>GAATTC<br></u></font><font color="red">CTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAATTC</u></font>tgaattcctttggtgtgttatctcgaatggcttggagtttcctcaacacagctattttgaattctcg<br>gtgtggaagctcacatatctctgtttctctaggattggtccctagtcctttatttagttcacttggtgaggttatgttttcctggcttgtcttgatactt<br>ctagatgtttacctgtttctacgcattggagagttagatatatattgtagtattcacaatctgggcttatttgcactcatccttcctgggaaggcctacc<br>agatattcaaaaaggcttgggaattgtgatctaatctgtatctgcttgaaggggcaccccaagcccaataatgctgtggttcttatagactcatagaggt<br>accaccttgatggtcttggataagagc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CNTN5:NM:014361:2/25	
0	chr11	100795221	100795527	1001104	0	+	pAlu11-101323986; RIP_Alu_chr11_100_01	NA	NA	SINE	Alu	Yb7	tttttgtgttctgttgagttcttttcactaatattttataattttcattgtagagatttttaacctccttggttaaatgtattcccaagtattgtatttt<br>tgtagctattttaagtgtttttattttaaattttttcagctagttgattgttagtagagaaacgctactgttttttaatgttaacttcatatcttgcaac<br>tttactgaaattgcttatcgcttctaagagtcttttggtgaagttgttagatttttctctatagcagatcatctgtcatttgcaaagagggacaatttga<br>ctttcccttttccagtgtggatgccatttctttctttcccttgcctaattgttctgcctaagactttcagtaccacattgaat<font color="green"><u>AAGAGTGGTGAAAGTAG<br></u></font><font color="red">CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAGTGGTGAAAGTAG</u></font>acatccttgtcttgctctagttcttacaggcaaaactttcagcttttcctcattcagtatgatgttagctgtgggt<br>ttgtcatatagggactttgtggtgatgaagtatgttctttttatacctaatttattgagaatttttatcatgaagggatgttgaatgttatcaaatgctt<br>tttctgcatctattgaaatgatcatatggtttttgtccttcattctgttgatgtgatgtgtcacctctatcaatttacatatgctgaaacatcctttgat<br>cccttcaatgaatcccactagattgtattgtattatcttttcattgtgcttttcaattgagtttgctagtattttgttggggatttttgcatctattttc<br>agcacgg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	101977069	101977372	1001105	0	-	pAlu11-102505827; RIP_Alu_chr11_101_01	NA	NA	SINE	Alu	Ya5	gagaagaacaatggaaaagggaaagttaaagcaggtagaagcctcatggctgagagtataatatacagcattgttcacttagaaaaattcagaggatttg<br>ttgggaacacgatgtaaaacagggttagatgtatcagatttaaagcaatgacaattttcacggagtttcatagaaataagctagtgctcagggaagaggt<br>cacagttggaggcttcgtgggttttgaatctcccacataaaggagacatttaaagatgtggagatgaaaaacagctctgtagagagaatgaggagaaaga<br>aaaaaagtctaaagaatgagcctaggaaatagaagaaaaggatttaataacaaccagagagattcagcactccgaaaataataacgat<font color="green"><u>AAGAATAGCCGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAATAGCCGA</u></font>cacttcgtggtcatttgcaacgtgctatgtgttgtgctaagaattttacagatattcactcatttaatccatactgtcattgtc<br>ctcagctggaattataacttagttctgtttgacatcagagacaaaacccctgtggtgaaatcccaaataaatctgggaaaaaagggtgtattttttttaa<br>gtgatcaacagtggaaaatgttgccaaggtcaccagactgaggactgaagaaaagggactgagtggccaggatagtttggaatatagtcacagcagagca<br>gtgaggaagaaagccagatcatggaaaggggttaaagagcaaatggggccaggcgcaatggctcacacctgtaatcccagcactttgggagaggcggcga<br>gtgg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MMP20:NM:004771:6/10	
0	chr11	83622	83928	1001106	0	-	pAlu11-1104836; RIP_Alu_chr11_000_01	NA	NA	SINE	Alu	Yb3a1	tctttttttcctgtgtattatttccttcagggaccttatgcactcttacacatccgtctattatttttatatggattactatacaattacatgttgaatt<br>tgtacttttcccccatatatcctgtcatatgttttcacctgagcatctcaatatctaatactcttatttgcttaaaatacacgtgattattttctccacc<br>ctgacatattttatgttcaactttctaatttctaaaaatggacctaccattgtcctatttattcttgcttaaatcttgatattttctttgagttcatgct<br>ccttcgtattcactccagctgtgataagtcaccaatcctttgggtttttacttaccagtatttctatttctgtttctatagcctta<font color="green"><u>AAGCTGGAACTGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCAGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGCTGGAACTGTG</u></font>tagtcccagttcctctgtgtagccccccaagtctgctctatttcaatcttctcttaagggaactccttccctccgtttt<br>tcttttcctccatttgatacatcacacttatagatagggcatcttccctaattactggcttcatcctcaattcccgggacccataccttcactggcttcc<br>taaatttatttaataattctcatatacctttgagaagtttctaatgataggcaacaaatgaatattgactacctttcttattttcctttattcaccaaaa<br>tgatttttaggatgtagacaatctgtatgcttcaacatacaccaaacttaccatttttgaaatattttacaatctacttgaaaagacttctttagaccct<br>atattca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	46974423	46974692	1001107	0	-	pAlu11-47049355; RIP_Alu_chr11_046_01	NA	NA	SINE	Alu	Yg6	aggtcgggttacccgcaaagggaagcccatcagactaacagcagatctcttggcagaaactctacaagccagaagagagtgggggccaatattcaacatt<br>cttaaagaaaagaattttcaacccagaatttcatacccagtcaaactaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctga<br>gagattttatcaccaccaggcgagcccctgaaggaagcactaaacgtggaaaggaaaaaccagtaccagccactgcaaaaacatgccaaattgtaaagac<br>catcaatgctaggaagaaactgcatcaactaaagagcaaaataatcagctaacatcataatgacaggatcaaattcacacatt<font color="green"><u>AACAATATTAACCTTAA<br></u></font><font color="red">CTTTGGGAGACCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGC<br>CGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTAGACGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATTG<br>CACCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAATAAAATAAAATAAAA</font><font color="green"><u>AACAATATTAACCTTAA</u></font>atgtaaatgggct<br>aaatgctccagttaaaagacacagactggcaaattggataaagagtcaagacccatcagtgtgctatattcaggagacccatctcacatgcagagacaca<br>cataggctcaaaataaagggatggaggaagatctaccatgcaaatggaaaacaaaaaaaagcaggggttgcaatcctagtctttgattaaacagacttta<br>aaccaacaaagatcaaaagagacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatacgcacccaa<br>tacaggagcacccagattcataaagcaagtccttagagacctacaaagagacttagactcccacacaata	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C11orf49:NM:024113:2/9	
0	chr11	27778806	27778994	1001108	0	-	pAlu11-27861288; RIP_Alu_chr11_027_02	NA	NA	SINE	Alu	Yb7	acactttcaaccaattgccaatcagaaaaattttaagtctacctatgacctgaaagtcccctcacactttgtctcgcccttccagattaaatcaatgtaa<br>atcttacatgtatttgattgatgtcttctgtctccataaaatgtataaaactaggctgtgactcaacaccttggacacatgttcttaggatatctcgagg<br>gctatgtcttgggccattggtcactcatatttggctcagaataaatctcttcaaatattttacagagtttaactgttttcatcaacaagtccattgagtg<br>cactgagaacaagggggtggcatgtcatcattctgacccctgggggtgaattgtcttggaatacacacacatgaaacctaaacataaaaatgt<font color="green"><u>GGGGCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGA<br>TTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGC</font><font color="green"><u>GGGGCTC</u></font>agga<br>agcaccttccatattacagtataactctagtgtgattgagacaagagaggccctatggaggactccattcatggactggtcacattactagaaaggggcc<br>ttgagggccacttctgagttaagaggtaggtgtgtgtgtgtgtctgtgtgtgtagagcagatagtactcagttggctccagcaacctgctcccaccacca<br>ctagcagaacccagtcacatcccaatctgacttgaaccagagaggccccagttttagttgacctactcttgtcaaactcagcaaagactttcatgctgtc<br>aagtcaattctcagtcctttccttaacttgtcttttagcccaggcctctatccttgaccatcccagctgggagtgactatgtttggagc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	32854883	32855181	1001109	0	-	pAlu12-32863776; RIP_Alu_chr12_032_01	NA	NA	SINE	Alu	Ya4b	tataatgctgatgaaacatcactgttttggcatcattgcctcagaaagacactgactacagctgatgagacagcacctactagaattaaggctgccaaga<br>acagaatatgctgggatgtgctaatgcatcaggcatacataagtggggtgatagataaaaacttgtgtcctcactgttttcaaggagtgaatttcttacc<br>agtctgttattatgctaacaaaaagacctggagcaccagggacatcttttttgattggtttcacaaacatttggtaccaagtggctcatgcttgctgcag<br>ggagactcaattggatgatgactgcaaagattttgttattacatgacaactgttctgctcatctcccagctgaaattctcattt<font color="green"><u>AAAAAATGTTTATTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAAATGTTTATTCT</u></font>atgtactttcccctaaatgtgacttcatcaatttagccatgtgaccagagtatccttagatcaataaagagtagattaaaaaaac<br>acttttcttaaatagcatgctagctaccagcagtgtgcagaggtgtgggtgtgagaaagtgttcaaaaggagtttagcctgaggatgctctatatgctgt<br>tgccattgcttgaaacaggtgtgcatgactggcacaactctggcctacaactatgtcgactggtaatgaagtcaccagatggtgactttgaaggattata<br>tatgtcaagtgagaaaaaaaaatgatggctgaactccttacctttgcaaaaaaatagaccttcacaatctgtcagttagctggaagaagtgaatactaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PKP2:NM:004572:10/14	
0	chr12	39946099	39946400	1001110	0	+	pAlu12-41376478; RIP_Alu_chr12_039_01	NA	NA	SINE	Alu	Ya4b	ttagcataggggcagctgctgactgacccaaggatggactagacaaaggccattcacacttttttcttagccagatgcatgtaccacttgtacttagtta<br>tttcattgcatcatatttttaacttaaatcaatgtattgtaaaggatactattatcaattgcaaaccagaatgatgtgccataaatatcagggtaccata<br>aaaataaacacaggggaaatagtttacattgaaaaaagaaattaaacaataaaaataaattatgatggctctaatatctacgtaaaatgcatagctgaaa<br>ataagttattcaaatcaaagcctttttcttctcggttcgtaataaaatgatttgctttcacccagtgttgcttcgttcatgtctt<font color="green"><u>AAAATGAGATATTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAATGAGATATTAA</u></font>aatcaataagttaattgcatttttttcctcttggtattgatactaactgaaactgagaatcccattttacctgtgcacctagt<br>tggatattgggagctggactgcaatttacattttcaattacagtcagtggtcctctgagcagtaggaagcaaatatgaagcaggaagctagatcccaggc<br>tactctttgacccaggtcaggaactcaccttaggaaaagatactttaagaaatctaagaaattattaaagaagaatggcacaaagaccaattctggcaag<br>aatggaagtgggggtagtagttggttgttctaacattttagctttttagtccactcataatcttagactgatctgttttttaaatcagtgaaggctgtgt<br>aa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	20753801	20754124	1001111	0	+	pAlu12-20762700; RIP_Alu_chr12_020_01	NA	NA	SINE	Alu	Yb7	taaataattacacttttgtctcttctccaacagagtctcaataggtacagaccacatccatagctctcattttacaactcagttaattaaaacctaaacg<br>ttaatttttttagagtatcacagatagcaattagtaacaaaagtggctcttagataagctgccagttatttgaaatcaaaataattatgatgcttgcaac<br>agtaacctgttgacagaaggaactgagttaaaataatgaaaaattttcaaaatactccatgatcaccatccatacttacttcaatagtcttgaagcatca<br>taacagtcaatggtttctctgtaattattaacaatataaaattatatttaccatgatttcaatgctaaatgttctcatgtgtagtt<font color="green"><u>AAGAATTGAAAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTGAAAACAG</u></font>gttaacctcattaagtgattcttaacctactatggtcaaggaaccctttgataaaattata<br>aaacctgtaaccctcttctcttaagcattcacataaaaacatacatacaaaaatgttcttactttttcagtggggttcatgaacccattgaggtgcagat<br>tgcacaaaacagatttaaggtaacctgtttatcaacttgaatatttcagtaatgcaatacatcttttccttaccatgctgaataaacagttctctacttt<br>tctttttttttttttttttttttttttgagatggagtctcgctctgtcgcccaggctggagtgcaatggcgcgatcttggctcactgcaagctccgcctc<br>ccgggttcacgccattctcctgcct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SLCO1C1:NM:001145945:5/15	
0	chr12	82483362	82483664	1001112	0	+	pAlu12-83892078; RIP_Alu_chr12_082_02	NA	NA	SINE	Alu	Yc1	tacaatagaagaaaatcatggacatcttaaatgggctaagggtttacattttaaatatgatggccatggtagaccacatttaaaggacatttgagaaaag<br>acttgaatgaggtaagaggattagcaatatgaaaataaggggaagggtagtctaggcagagggaatccagtgagccagttactcttctgatacctgcaaa<br>aagaggatgaaaattggtaattggtgaaaatacagatgggatttggggtagaatgtgttcatgcctagttttatcacagaataggaaacaaatttatcat<br>ttgaggatgagttgaagatatatgaaaattggtaaaacgtatgagagtcattgtgggaaagaaaatgggagccaactagggatacat<font color="green"><u>AAGACTTGTACTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAAAA<br>AAA</font><font color="green"><u>AAGACTTGTACTC</u></font>agcagggatttgggctgggaagagaataatttttcattttccaaaggatcattcgtgcagttgagcaattttctacaaaatgct<br>ttttggagtagacgtggctgagaagggggtgacatttgttcattacacactacctgtagcattttgtgggctgttctatattgcaaacactagtgtacaa<br>ttattagttttgcatatgaggtagcttagattcaaacagggtaagctggctgatgttaaacatattttcaggttgattttaggtgatgttatcatataat<br>aaggtaaaaatgctagaggaccatgctgatgaaagaacagatgataaaagtgttaatgtatacagacaagtgtgccaacaggtggtgatccaggggcagt<br>gaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	27325271	27325589	1001113	0	-	pAlu12-27334173; Ya5ac2145; RIP_Alu_chr12_027_01	AAAACGTCAGAGCAGGGATG	GTTGCCTTTAGGAAGCTACAGA	SINE	Alu	Ya5	gtgctgggattacaggcctgaggcaccgtgcctcgcctcaatttactctttgacagaaaatttcccagcttagatcatgattatctggaaatcaactaag<br>cattatccttatctccatccttatcaccactgttgttgtcatggataccatttataaaacaccttctctgtgccaggcagtactgtgtgcattatcttat<br>gtaatcttcacaacaactctatgaggtaggtactatttctccattttagaaactggaaaccagggcacagagaggttatttaccagaggcctctcaactg<br>gaaaacgtcagagcagggatgtgaaccctgttcactctagagctgttgttctaatgaccatgcctactttttacaaccagagtcagtt<font color="green"><u>AAACAAAGCTAA<br></u></font><font color="red">AGCCGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAA<br>AACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACAAAGCTAA</u></font>agccaaaaataaatctgtagcttcctaaaggcaactcaagataattactggtcttctcttacatgatca<br>ccttatttattcttagtaaatcttaaatggttttataattccttgttttaaagaaacttaaaaggatcaactcgtctaaccttctaacaaagacaaggct<br>gtgttgctgtgcctgattcaaactgcccttcttgcccaaacagctctgtacgctttttaaagagttttataagctgttggaaatctatgcaattatttca<br>gactatttaaaatatgtgttgtctatcttatgctgtcttcatttacttatctaaataggaaaaaagtatcagaatgctttctacatgaacaggaagacta<br>accaacgttgaatggcagc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	465	135	NA	intron:STK38L:NM:015000:1/14
0	chr13	18374811	18375098	1001114	0	-	pAlu13-18406708; RIP_Alu_chr13_018_02	NA	NA	SINE	Alu	Ya5a2	ttgtattaaccccttgcctgatgcatagtttgcaaatactttcttccgttctctggattgtttcttcattctattgatggctttctctactttgcagaag<br>cgtttaagtttaatgcaattgcattttgtctatttttgctttttgttgcttgtgtttttgatgtgtatttgaaaatcccttgtcctaaccaatttcatga<br>ggcattttgctgttttcttctctagtagtttcatagtttcatgtcctacatttaaatctttattttcagtagatggtaagataacagcctcgatgtattc<br>ttgtacatgtgggtgttgggttttcctagcacagtttattgaagagattgtccttcccgaatgtgtgtttttggtgcctttgttaa<font color="green"><u>AAGAGTTGACTGTA<br></u></font><font color="red">CGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTA<br>AAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCT<br>TGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTTGACTG<br>TA</u></font>aaagcttgaatttatttctgagttctctattctgtttcatttgtctatgtctgtctgtcattcgtctatgtatctctgtctgtctctctctgtctgtc<br>ccctacctattttttttctttggccactaccatgctgttttggttactagatttgtggtatattttgaaatcaggtagtgtgatgcctccagcttttttc<br>tttttattcaagattcttttgtctatctgaggtattttgcatttccatgtgaattttaggattttttttttttttttttttttttttttgagacggagtc<br>tcgttctgtcgcccaggctggagtgcattggcgcgatctcggctcactgaaagcactgcttcctgagttcaggcgattctcctgcctc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	59070501	59070824	1001115	0	+	pAlu13-59109036; RIP_Alu_chr13_059_01	NA	NA	SINE	Alu	Yb7	gacttccatctcatcagaagtctataacaaagtgtgcccctttactgctgggatggtgtgagagaagagcgagtgtgcagccagagcttccaccaacaac<br>cggtggtaactagagctccctctaccacccatggtgtcagtgaaggccacatggggagcctgacctcccagccctgcccagcagtaatgaggtaccctcc<br>cccagggtattaacggaacttggacatctgccccaacctgacattaactgagtggcaccaccatcatggtgtcaaaagatatctgctaaaacacaagatt<br>taaataaaattcagagtcccatgatgcttaaaatgtccaggaaaaatttgaaaatcatacaaagagcttaacttgaatgaattaatgaatt<font color="green"><u>AAGATCATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAATAAA<br>AAATAAAAAAAACAAAACAAAAAA</font><font color="green"><u>AAGATCATC</u></font>aacactcctcccacataagtggtagagatggtgacagtatctgacaaaaattccaaagtagccatga<br>gaaaaaatgtttctatgaacatggtttaaacaaagggaaaaaaaagtttcagctaagaaaaagaagatataaaaaaagaacaaaatggaaattttaggac<br>taaaaatacagtagctgaaataaaaagctcagttggtgggctcaacagcacagtagagatgacagtcagtgaactgtaagagcaatagaaattgcccaat<br>cagaacaatagatagaaaaaataaactgaaaagataaagagagccttaggggtttatcagactataattaaaaatttaacatttatatattagtccgttt<br>tcacactactgataaagacacatc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	62554195	62554511	1001116	0	+	pAlu13-62592730; RIP_Alu_chr13_062_01	NA	NA	SINE	Alu	Y	aacaaaactgtcagccaagaatcctgtatgtgtcaaaatgaccatttaaaagtacgggagaaactaagtcagtttcagataaatacaagctgagaaagat<br>cattaccactagctttgccctgcaagaaatgctacaaggaatattgcaggttaaaatggaaggacaatagacaataactcaaatctgtgtgaagaaataa<br>atattgcagtaaaagtaaatgcatgagcaattataaaagctggtattattgtaacagatttgcaatcatattttgttttctacataatttaagaaactaa<br>tgatttttaaaaatctttagctaaaaatattaaacaattactaggttatggttttggacatgatgaatgaagatggaattttgtgacatc<font color="green"><u>AAGAACTAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACTAAA</u></font>atgattggggacagtgctgtaaagttttgcatgtcatcaaagtttgagtattataactgtaggatgctgatta<br>taatccccatggtcaccaaagaaagagtatagaatttaaaaaaaggaaatgagaaataaaatatttcagtacaaaacaagaactatacacaaaagaagac<br>agcaatacagaaaattaggaacaaaaaagctacaagtcatatagaaaacaaatagcaaaatgatagaagtatgtccctttgtcaaaattactttagatat<br>aaaaggtttaaactttccaatcaaaatgcagagattggcagaataggtaagaaacaataatccaactacatgctgtctaccagctactcacttcagatca<br>aaagtcaaaaataagtt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	80645256	80645565	1001117	0	-	pAlu13-80683790; RIP_Alu_chr13_080_01	NA	NA	SINE	Alu	Ya5	aaaaatgatggaagagtgtgattaatgataaatgaacttctattatctgccagttactttatatatgcaccagagtcaatgcttaacacaactgctggaa<br>gtaagaactgctaaatttgttttcctgtgatgaaatggaaattcataaggattataatatttcattgaattgaaaaccaatcctattcattgaaagacac<br>gtatcaccttactgccaggagaaacagaaaatgctgccaaacatgactgtaagacttatctgtagactggtactgactcaaaaatgttattctggtagga<br>tttaggtgggtaaatgataccggtaggatgggttgggtggcccatggagtaatgccaggtagtaaagcacctgtttaaggca<font color="green"><u>AAGAAGTTGGTGAGCTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAGTTGGTGAGCTGA</u></font>atctattcccaggcctctctgactccaaagccctgattcttacattgaacctcacggcctcagctatcttca<br>caaaacaggatgcatttgacattttcctatatgagaactcatcttttccttgatggcaccagcagtctttgtaaccttcatgtggaggaaatcaaagtgc<br>atggcagtgtattaatcagaaaaatggattgtgcttgcctcctcctgccaatcacttgacaaggaaaaacagatagcaaagattaaatcacagcttgctc<br>aaatgctccacacttgaaataaatacatttcagctttcacgaaagtccattatgcactgtttggctttgattagcagggggcatttcataaaacatgaaa<br>gaaaggtaca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	89958054	89958290	1001118	0	+	pAlu13-89996590; RIP_Alu_chr13_089_03	NA	NA	SINE	Alu	Yb7	attaaacctaatgcaaccactgaaatcatgtcatagcattataaatcataagcaacttaagagaaaatgaaatcataaaactatgtaagtactctaaaat<br>aaaaaagaaaggaaaaagagataaataggatatataaaaaagcaaacaggaatataatagagctaaactttattatagcaattatcacataaaatgtaaa<br>tagtttacacactcaaaagagattttgaaaagatccgactatatgctgtcttttgaataaagaaacaaatcagttaaaagtgaataaatgaaaaatatat<br>catgctaaccaaaaaaagctgatgagtacattacagtaagacaaagtagattttaaaacaaaaaactccaatattatcaaaatgataa<font color="green"><u>AAGGGTTACTTT<br></u></font><font color="red">AAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGC<br>TACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGA<br>CAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGGGTTACTTT</u></font>atcataagagcaacacatggttacaatcatgcttacatgtaaacaaatata<br>tttgcacatttaaaataaatgaaccagccactaataaaactgcaatgagatatagataatgccataatttcagtttgagatttcaaaggagctcacaata<br>attgattgaacaagtatataaagaccagtaagaatacaccgaccaacttgacgacagtagtatctatagaagcctgcatccaacaaaaatagaaaacaca<br>tactatttaggtatacatggagtacttttgggcatagaagttaatctgagccataaaacaaatatcaatgaatttaaaaatatcttttctactaataatg<br>gcatcaataacaacctaccaaatcacaaaatatctag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	112838951	112839264	1001119	0	-	pAlu13-112877490; RIP_Alu_chr13_112_01	NA	NA	SINE	Alu	Ya5	caacccttggcaaaccctgtcccaccactaatctattctttatcacaatgataacaacctattgagcatgtcatgtaaatgaaagtgtttattataggac<br>cttgtgaaactagcttttcattcaatacaaagcctttgaaattcatgcaagttgtatcaatactttcttacttgttgttgctgacaactgttatattgta<br>tgggtacacccagcaaaagacatttatcttacttccagcttttggcaattaagaatagagttgctggccaggcgtggtgcctcacgcctataatcccagc<br>actttgggaggctgaggcgggtggatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaa<font color="green"><u>AAGTACAAGAATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGTACAAGAATT</u></font>agcctgccatggtggcacacacctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacctg<br>agaggaggaggttgtagtgagccgagattgtgccattgcaccccagcctgggcaacgggaagactctgtctcaaaaaataaaaattaaaaaaaaaaaaaa<br>agactagagttgctatagacatttatgtacaggattttatgtggaaataagttttcatttctctagggtaaatgcccagaaatgggattgccgagtcctg<br>tggtaaccttatataactttataagaaactgtcaaattccttttcaaagtggccgtgccattttgcattcccacgagcagtgtatcaaagttctgctttc<br>tccgtgtcttaacc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:F10:NM:000504:2/8	
0	chr13	62421818	62422120	1001120	0	-	pAlu13-62460348; RIP_Alu_chr13_062_02	NA	NA	SINE	Alu	Ya5	gagtttgtaggtatactgaacatcattttctgaattcttatgcaagaaagaataagctagagtttttgttctgtctccttaaaagtgggattcccaggaa<br>ataagcctaattaatgggctttaattatacatcacgtattaaataggagagtggaagaaaatttgattgacaaaacccattgattgtgggaggggtggat<br>gtttaaaaaaatggaaaaccaatgctgaattgcaaaagttttgttaatgtataattcattttgaaatctcaacttcatttacatttttagtaacactacc<br>aaaaaattaatcaactcattatcttcatttcattttaagggaaaatggaaaacaactgccatccttatattataatcttcaatttat<font color="green"><u>AAAAATCTTCCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>ATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAATCTTCCAA</u></font>attttcgataaattcttgaaatttcaaatattttccccataacaacctttgtacctgatcaagaacagtgatatattatatatg<br>gacaataatattattacccatttatttagtatgtagatcaggggtatatttctatgggaaaggaatagacaattaaatattgaattttatgtgtcagaaa<br>tgctattgtatttaataattaaaaacatgctttgagacacgcattaaaattatcgatttattaataagatagaaacaattcaaagagattagtttcttta<br>attactcacaataagaaggaagaatatgaatgaaatataaaattatttcctatacactcctctattttattctgttagattatttagaaaatagaaacag<br>gaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	63275104	63275400	1001121	0	-	pAlu13-63313637; RIP_Alu_chr13_063_02	NA	NA	SINE	Alu	Sg	actgcttttcttctttttctgtaaataaatagctgtaccataccactggagcctagtgtacatgtcttcggttctcagtgaccccaaatcatgcaggtct<br>cttccctgggtggcattcatctgcttgttaaccttggccgcactcattttatattctgtcctgcagcacagcttgaccgccccgtgaacagtgaaacaca<br>gctatttctaaaaagtattttggtaaactctcttggaaggaacaaaactagtgtttgttggtcttctatattaccatgtgaaactgagagtgttaaggca<br>caactactgcaggtagttgctaagtgatgtcagggaaacttgtgcacctcttaaaaatgtgaacaactcaaagttgtgctgtattca<font color="green"><u>AAGTTTAAAATCA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAAGAGTTCGAGACAAGCCTGACCAACATAG<br>TGAAACCCCGTCTCTACTAAAAGTACAAAAATTATCTGGGCATAGCGGCGCGCGCCTGTAATCCCAGCTACTTGGGAGGCTGGGGCAGGAGAATCGCTTG<br>AACCCGGGAGGCAGAGATTGCAGTGAGCCGAGATTGCACCACTGCATTCCAGCCTGGGCGAGAGGGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>TTTAAAATCA</u></font>agcatacagcttcaaatattttgacacatgcttttaaacaagagtttgtccaagtaggctatacatcagaaaaatctagaggctcagaac<br>ataccttgcaaatagaattgtaaaaaatgtagcctaagtaaaagcagataaaatcttctgattgaaaaaattactgcatagcattgggcaattttttttt<br>ttttgagacagagatctgtactgagaaactattatatacaggaactgaagtcatcatttggggtacactagagtaaatagaaaacaaaaataggaaaaag<br>ataaaagaaaaaacaaaatatatgaaggtctccatctttgtgtgttttatattctggataggagagatggattataaccaaaaaagtacaatcagtt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	80539709	80539710	1001122	0	+	pAlu13-69295551; RIP_Alu_chr13_080_02	NA	NA	SINE	Alu	Ya5	attgtgatcttagggtgtcaattttggatctttcctgctttctcttgtgggcatttagtgctataaatttccctctacccacacactgctttgaatgtgt<br>cccagagattctggtgtgttgtgtctttgttctcataggtttcaaagaacatctttatttctgccttcatttcgttatgtacccagtagtcattgaggag<br>caggttgttcagtttccatgtagttgagtggttttgagtgagtttcttaatcctgagttctagtttgattgcactgtggtgtgagagacagttcgttata<br>atttctattcttttacatttgatgaggagtgctttacttccaactatgtggtctattttggaataggtgtggtgtggtgctgaaaaa<font color="green"><u>AATGTATATTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AATGTATATTCTG</u></font>ttgatttggggtggagagttctgtagatgtctattaggtccgcttggtgcagagctgagttcaattcctgggtatccttg<br>ttaactttctgtctcgttgatctgtctaatattgacagtggggtgttaaagtctcccattattattgtgtgggagtctaagtctctttgtaggtcactaa<br>ggacttgctttatgaatctgggtgctcctgtattgggtgcatatatatttaggatagttagctcttcttgttgaattgatccctttatcattatgtaatg<br>gccttctttgtctcttttgatctttgttggtttaaagtctgttttatcagagactaggattgcaacccctgcctttttttgttttccatttgcttggtag<br>atctttc	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	95431438	95431741	1001123	0	+	pAlu13-95469973; RIP_Alu_chr13_095_01	NA	NA	SINE	Alu	Yh9	ggtcaggagttcgtgaccagcctggccaacatggcgaaaccctgtctctactaaaaatacaaaaattagccgggtgtggtggcgtgtacctgtaatccca<br>gctacccaaggaggctgaggcaggagaattgctggaacccgggaggcagaggctgcagtgagccaagatcatgccactgcactccagcctgggtgacaga<br>gcaagactccatctcaaagattcttcctgtttccttttatatttgtgggcaggatgtttcttttatttatgtatttattttaaactaaatgtttcttatc<br>tcctctactcgaaggtcatatcctctttatctccttaagtaaagccaggagctctgcagtacccccaagtgagaaaaattatgctt<font color="green"><u>AAGACACTTTTGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGACACTTTTGTT</u></font>ttagtttagtcccagacccagaggaaaatccttcaaatttcttaagtaaatccttaaaaagtgtaatttacaccagagcaat<br>tgacctggtgtaaataaactgcagcatgagaagaagaagaaaaaaagaccattattacttcttttttcggtgaacattttgtttacatgttttgcaggaa<br>atgtacttttcggtttgtatggatgagatgctgtaacagaaacacatttccagggctttctcgtgtccaatccgtgtgcaatgcaattgcaatgaatagt<br>ccaagattttcttaccttctcatcacaaccaccctcttccccaaggttggaacttcagtttctttaattacttctcccacatctcatgagctagtgggta<br>acat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:UGCGL2:NM:020121:10/39	
0	chr13	100040079	100040382	1001124	0	-	pAlu13-100078613; RIP_Alu_chr13_100_02	NA	NA	SINE	Alu	Ya3	ggagttcaagaccaccctgggcaacatggtgaaatcctgtctctaccaaaaaatacaagaaactagccgggcgtgatggtgggtgcctgaggtcccagct<br>actcagaaggctgaggtgggaggatcactcgagcctgggaaacaggggttgcaatgagccaataacatgctactgtactccaacctaggtgacagagtga<br>gaacccatctcaaaacaaacaaaaaattcgtctagtctgcgtcatctttaattttcctttatcagaagaattatttatctatttgtctcactttcctttg<br>ctgacatgattttcccccctcaaaaaagagatgaaagtggaatcattctttcgcttcaaaaagttaagaattactgctgtctttaaa<font color="green"><u>AATATTAATATGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAACATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAACCAGATCCCGCCACTGCACTCCAGCCTAGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AATATTAATATGAG</u></font>gctagacaaggttttttaatacatttcaatttaattatgaagtgtccaagacaagaaaaaactgtgaaaaccaacgacttat<br>gtacctgatggtttagatttcttttggaattgtacatctgttcaaaatacaattacatctgcattgttggaaacgtttggataaaaaccagtttatataa<br>aggtttcaatcagtccacatccatgagaaagtagaaagggcaggaaatgattaagggggattattgctaatctgataaacacagatttgtgtctttcgga<br>gagacagaagtgtcactctctccatagctgtaccattcctaccacctggcccccaagtggcattgctttaacccattgtctctagggaaaatgttctctt<br>tcgat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	98476282	98476352	1001125	0	+	pAlu13-98514816; RIP_Alu_chr13_098_01	NA	NA	SINE	Alu	Yb9	atggaaaatagtctggctgttcttcagatggttaaacccaggttaccgtatgatccagcaattccactcctagatgcccaacgttgaaaatatatgttcc<br>cacaaaaacttatacatgaatgctcttagcagcactgttcataataaacaaaaattggaaacaacacaaatgtccatcaattgataaatggataaacaac<br>tacagaatacaatgaaatattatgtaccaacttttaaaaaatgaagtatgatccatgccacagcatgggtgactcttaaaaccatgctaagtgaaagaag<br>ccccgcataaggatcacatagtgcatgaatccactgctatgaaatgtccagaacaggcaaatatctagagacagaaagcagatt<font color="green"><u>AACAGTTCCCTAGGGC<br></u></font><font color="red">GCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACAGTTCCCTAGGGC</u></font>tagggggttgggt<br>ggagcagagttccggggtgatggctaaggggtccagtgttcttttggaaagtaataaagatgttctaaaattgactatggtgatggatgcacaactctga<br>atatactgaaaaccactgaacattttaaatggatgaatcatttcatgtatgaatcatatcctgataaaggtgtttctttaaaaacaagacagcacatatc<br>agagggtacatcaatccaaagttgaatttctcttgaaagtaccctaatttcaataccgttatctttccaaaacatatcactaccctaacacagcaaatgc<br>ccaaaagcactcctggcactgcatatgcagaagagaggacagctaagaatggtaagatgatttcttcatca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DOCK9:NM:015296:1/56	
0	chr14	30332752	30333065	1001126	0	-	pAlu14-29252942; RIP_Alu_chr14_030_01	NA	NA	SINE	Alu	Ya5	ggacaggctgactctcttgtttggggctaatgaagctggtgactttaagttgaagccagtgctcatttaccattctgagaattctagggaccttaagaat<br>tgtactaaatctattctgcatatgctttataaatggaacaacaatccctggttgacaacatacttgtttttagcatggtttactgaatattttaagcctg<br>ctgttaagatctactgctcagaaaaatatttcaaaatatactgctcattgacaatgcacctatcacccaagagttccgatggagatgtacaagaagatta<br>atgttattttcacgtctgctagcacaatatccgttcttcagccatggatcaaggagtaagttcacctttcaagtcttattgttt<font color="green"><u>AAGAAATACATTTTGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCGCGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATACATTTTGT</u></font>aaggctttagatgtcataggtagtggttgttctgatggatctgggcaaagtaaactgaaaaacttctggg<br>aaagatttgccattgtagatgacattaagaccattaatgattcatgggagaaggttaaaatatcaacatgaacagaagtttggaagaagttggtttcaac<br>tcttatggatgactctcagggattcaagacttcagtggaggaagtaactgtagatgtggtggaaatagcaagagaattagaattagaagtggagcctgaa<br>gatggagctgacttgctgcaatctcatgatcaaacttgaagggttaaagagttgctttttatagatgagcaaagacagtggtgtcttgagatggaatcta<br>ctcctggtaaagat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	33359800	33360125	1001127	0	+	pAlu14-32279987; RIP_Alu_chr14_033_01	NA	NA	SINE	Alu	Yb10	agaagccactcattatcatgagaaatcactgtgaaaagactcagaaatatttaaaatctgtgtattttctgcattctctgtctccaggagcagaacttca<br>ctggaaccagaaaactgctgcgaggacacagaatcagcaaaaggggagtcagatgaagctcctgttttcacatcaggtgcacaacaggaacactcttgcc<br>tttgggactggaatttctggaaatgtgttggtgaattctcccactccaagggacagagctcgtatgggattttcaaaacaggggtcttgggtgattctcc<br>ttttttctatgcttcccacagctcactaagccctctgctttggatgtttcatttctttaaatatgttaatgcaattatacatgcatt<font color="green"><u>GAAAATTACAGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAAT<br>GGCGTTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATTACAGTC</u></font>ttgcaaggctggacaccagtcttcatctgcatgacaaaactttggtctccacaacctccta<br>tcttaacccagacattgctttccattgataataactctttcaaccaattggcaatcagaacatttttaaatctacctagaacctagaaccccactcctgc<br>ctcttcgtgtcccacccttctggaccaaacctgtgtatattttcatggtatttaattgaagcctcatgtctccctgaaatgtataaaatcaagctttgtc<br>caaaccaccctacgtacatgttctcaggggctcctgagggccgtgtcatgggccatggtcactcatatttggctcaggataaatttcttcaagtatttta<br>cgtagtttgattcttttcatcaacag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	45412163	45412476	1001128	0	+	pAlu14-44332350; RIP_Alu_chr14_045_01	NA	NA	SINE	Alu	Yb3a1	tctcttgaagaaactcaagagtttccttattttctgtgctttgaggagggcccaagtcctctaagatgggtccctgctttgtttcaaaatgagtatgaag<br>aatgcgaggtatgaaaaactcataaggcccagaaaaatatgagaacaaatcctcagtcacccctcccatgctagcaccagtgtccctgggcaattgttta<br>aaggtattttatttcttccttgtagttttcaggctagctgataaattacctaaaatgcaattataagttgcacaaggtgaccctcactcattatctttat<br>gttcctgaaatttttgatacaaaaataatgtatagccaatcaatagcttatgatcaacttaagaactgctccttctttttttctttaaaaag<font color="green"><u>CCACTTGT<br></u></font><font color="red">GGCCAGGCACAGTGGGTCACACCTGTAATCCCAGGACTTTCGGAGGCCAAGGCGGGTGGATCACAAGGTCAGGAGATAGAGATCATCCTGGCTAACACAG<br>TGAAACCCCCTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGGGGGCATCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCCAGGAGGTGGAGCTGGCAGTGAGCCAAGATTGCGCCACTGCACTCTAGCCTGGGCGACAGAGTGAGACTCCTTCTTAAAAAAAACAAAAACAAAA<br>ACAAAAACAAAAAA</font><font color="green"><u>CCACTTGT</u></font>aactgctgttaattagaggcctggcaattcaggccaacttaaatctgtgtctccttggttgcagtcctcaaatttggt<br>ccaaataaactctctatttatgttaattttgcttcagtttcttcctttatgttgacaaagtccaaagactaaatctcagttttatagtcttacaacttca<br>gaagtctgctgttgtgtcttgttttctaactgctttatatgaattctccagtgcaataatacattttttttttttttttgagatggagtcttgctctgtc<br>acccaggctggagtgcagtggcgcgatctcggctcactgcaatctctgcctcccgggttcacgtcattctcctgcctcagcctcctgagtagctgggact<br>acaggtgcctccca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	45647688	45647993	1001129	0	+	pAlu14-44567875; RIP_Alu_chr14_045_02	NA	NA	SINE	Alu	Ya5	atttctgagcctgtggaggtacagggggcattcctgggcctccaagagtgtggagatgcctgggagtggccgcggcttggacaggtgcagccatacccag<br>gagggtggggctcctggctgctcccagcccctaagagcacagatagcctaggatagcctaaggagtgtgaagctcccaccctgccaactcagaaggggtc<br>agggcttctgcctgttctactgctcctgcaagctctgtggagcacagagccctggccaagccttccccactgaagctagtgtcatggcaatggccactct<br>ggatgggccacagctgccattagtattgcagatgattgagataaaaaaatcacctaacaagtggaagaagagcaaaatggctgaat<font color="green"><u>AAAAGCCTCCAATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAGCCTCCAATTG</u></font>gttcccccagcaggaacatgaaactgaataactattcacataagaaagcacctttgtaagaaccaaaaatcaggtgagc<br>aattacggaatctggttttaatatcatgtcaaagaaaaaggcactgaagagggtaagacagtcttgggttgctgacacaactcctaccctatgctttccc<br>tgtggctgcctggtggagagagaatctgtgtgtactgaagagcacaatgattgtgggaatttgcattgtaactgcatgctgccatgttacagcagaaagc<br>agcacaaggaataagagggatgattcctctctgttctgcatgctcttattgcttattggtctgtatgatccctccagtcccatagaaggagcatgtagac<br>cagaggg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	56442893	56443175	1001130	0	+	pAlu14-55363036; RIP_Alu_chr14_056_02	NA	NA	SINE	Alu	Y	ccccacgggagaaaagttaatggatgatgaggaaggagagatgttggactactttgagaagcttgattatgaaggagagggacagagcagtggcttaagg<br>actgcaggatgtgaggacagttttgtttaggtctgagtttggaaataattgaagatagggctatattcagatgacccagaatggaagatggaggttctga<br>ctgctgactgctggcgtttgtgtgtgtgtgtgttctaaagtagaagatgaagtctgggggcttcaaggataaatgattcagaattgttgttgagagactc<br>agaagaggtatgtgactgagatggagaaaaaggattataatt<font color="green"><u>GAAAGGCTATGTGAGGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCATTTTGGGA<br></u></font><font color="red">GGCCGAGGTGGGCAAATCATGAGGTCAGGAGATCAAGAACATCCTGGCTAACACAGTGAAATCCCATCTCTACTAAAGATACAAAAAAAAAAAAAATAGC<br>CGGTTGTGATGGTGGGCACCTGTAGTCCCAGCTACTTGGAATGCTGAGGCCAGAGAATGATGTGAACCCAGGAGGCGGAGCTTGCAGTGAACCGAGATTG<br>CGCCACTGTACTCCAGCTGGGGCGACAGAGCGAGACTCTGTCTCAAAAATAAATAAATAAATAAATAAATAAATAAATAAAAA</font><font color="green"><u>GAAAGGCTATGTG</u></font>cttg<br>gaccatgcagacaaaagccacccttgataaaagcaatgggcttttcctttaggggaattcttcattcacgtatgtatttatcattcaacaaatatttatg<br>aatgcttgccatgtgccaggcaccattataggtctccaccagcagtggtccccaaccttttcgacatcaggggccagtttcacagaagataatttttcca<br>tggactagatggggggatggtttggggatgattccagcacattacatttattatgtactttatttctgttactattacgttgtaatatataattaaataa<br>ttatacaactcaccataatgtagaatcagggggagccc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	73736591	73736897	1001131	0	+	pAlu14-72656778; RIP_Alu_chr14_073_01	NA	NA	SINE	Alu	Sc	taatctgttacagcttcaagcaagaaagtcagtatagcctgaaagacaagagaaacgggatggtttataggagttcccatttggttgaaagctagaagcc<br>ctaattgaccttaaagtaacatgctatgggatggtgggattgtcccctctgacagcacatatgaaatagttcatctatataatagaaacgcacacacacg<br>aaaaagaatcttctgacttaaatacaactttcatggagttcttcaccacttatctgtctctgttaaaatctgaaaatctagcccatggctaaaatctatt<br>atatgtgttctccatatttcttgtataagccagtccccagcatctgatgttttgagaagtgcatggagtttcctaaactttgcacaa<font color="green"><u>AAGAATATCCTGG<br></u></font><font color="red">GGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATAGGTCAAAAGATCGAGACCATCCTGGCCAATATGGT<br>GAAACCCTGTCTCTACTAAAATACAAAAATTAGCTGGGCATGATGGTGCATGCCTATAGTCCCAGCTACTTGGGGGCCTGAGGCACGAGAATCGCTTGAA<br>TTCGGGAGGTGGAGGTTGCAGTGAGCCGAAATTATGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCTGTCTCAGAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAATATCC</u></font>tggcaatagtctgatggtgtttggacacaagaaaagttatggttttgagtcgtgagtgtttgctagggcatggcactcttcag<br>tttaacagctgatccattaaaccttttctgacatttgtgccttgttctcatgctagaattaatgctggatttttctctcatttgaccatcaatgtagttt<br>tacttattgaaaggaaaaaagacttaacacaagataggaaagatgagtatgagaagtaaaacattctgctggggtgctacatagaaggttaggttgtagg<br>ggctttgattttaatttaaacttattatcgattgatatttctgtatctcactaaatgcggttgaagagtgtgtgtgtgtgtgtgcgcgcgcgcatgtggc<br>caaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	downstream:LIN52:NM:001024674	
0	chr14	34471165	34471474	1001132	0	+	pAlu14-33391352; RIP_Alu_chr14_034_03	NA	NA	SINE	Alu	Y	agggttaatcctttcctgttttaatgtgtatgatacgaagtgtatctgcctcaatttttatttatttattttttgagacagagtcttgctctgtcgtcca<br>ggctggaatgcagtggtgcaatctcggctcactgcaatctccgcccttggttcaagtgattctcctgcctcagcctcctgagtagcagggattacaggtg<br>tgtgccaccatgccaggctaatttttgtatttttagtagagatagggttttgtcatgttggccaggctcgtctcaaactcctgacctcaggtgatccgcc<br>caccttggcctcccaaagtgctgggattataggggtgagctaccatgcctggccctgtctcaaattttagtgcagtgcaatctatcact<font color="green"><u>AAGAAATTTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCACCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGTGGAGCTTGCAGTGAGCCCAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAATTTCA</u></font>aagctgttatttaagatgttaattatataatatacaaatatcacggttgtgtggtttaacctgttaagacatgcttaga<br>aaagagaacgtgagtatactgactttattacaagcctatattggaagatatatggtaatacataggtatgtataactccctgataacaataggttatgca<br>ttatttaaaaacataatgtcaaacagcattacagttggtaatttatttaaagactacaagcttgcttgtctgttcactactgcatttctatcctgaacat<br>ttctggatatattactatatatcaggtttatatacttttactataggtatataaatatttgctgaatgaataaaataggaagataattttaaaaggtaaa<br>aaatggcatt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	53633817	53634135	1001133	0	+	pAlu14-52554004; RIP_Alu_chr14_053_01	NA	NA	SINE	Alu	Yc2	aatccaaaaatgaaattaaaaaacaattccatttgatagcatcaaaaagaataaaatatttaggaataaatttaacaaaagaagtgtaaaacttatactc<br>taaaatctacaagtcattgttaaaataaagaagatgtaaataaataaaaacacgctatctttatggataagaagacttagtatttttaagatgccaatac<br>tctccaaattaatctgtacattcaacacaatcctcatcagaattccaagtggtttctttgtggaaattgaccagctgatactaaaattcacgtggaattg<br>caagggatccagaatagccaaaacaatcttgaaaaagatgagcaaagttgaaggactcacaattatcaatttcaaaacttacttc<font color="green"><u>AAAACAACAGTAATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAACAAACAAACAAAAAAA</font><font color="green"><u>AAAACAACAGTAATC</u></font>aggacagtgtggtattggcataaggacagacatagatcaatggaatagattgagagtcctaagaca<br>aatccatgtgtctatggtcaactaatttttgacaagggcaccaagaccatttcatggagaaagaatagtctttcagcaaatgatgctgggtatcttagta<br>cattttgggctgctataacacaatgccacagatagagtattttataaagaacagaaattcatttctcacagttctggaggctgagaagttcaagatcaag<br>ttgccagcaggtttggttgtctgacaagggtccagtctctgcttctaagatgaagccttgaacaatgtgtcctccaacaaggaagaatgctgtgttctca<br>catagcacaaagtggaagg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	49188638	49188777	1001134	0	+	pAlu14-48108825; RIP_Alu_chr14_049_02	NA	NA	SINE	Alu	Yj	aggatgatcagaacaggccgggctcataatttagtgtgacttgagcacaggcttgaagcggaagagggacttagtcaagcagatacccagaggaagcgca<br>ctgcaggcaaagggaacagatggagcccaggccctcagactggagctcgcctggcatccttgaggaacagaagggaggctagtgtggctggagtaaatgg<br>ggaggagaggaaatcagagaggtaacggagccagataacacagggccttgattaccactgcaaggatacggctgtcactaaatcacgaggggtccctttt<br>tccaatgagggtccctttttccaggatcgggaaggtggatgggatatgccttatgctttacaggatcactttcacactgcgtt<font color="green"><u>AAGAATAGAATACGGAG<br></u></font><font color="red">AGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAGAATACGGAG</u></font>gggaaggagtaaaagctggagaccaattaggaggctattgtaa<br>taatccaggccgagaagatggcagagcagggctcctcaacctccaggccatggactggtaccagtccatggtctgttaggaactggaccacacagcagga<br>ggtgagcagcaggctgcaagcaagcaaagcttcatctgtatttacagccactccccatcggttgtattacatcctgacctctgcctcctgtcagatcagc<br>aggggcattagattctcacaggagcacgaatcctgttgtgaactgtacacgtgagtgatctaggctgcacactcgttataagaatctaatgtctgatgat<br>ctgtcactgtctcccatcatccccagatgggaccgtctgg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:POLE2:NM:002692:15/19	
0	chr15	20978288	20978604	1001135	0	+	pAlu15-20845151; RIP_Alu_chr15_020_01	NA	NA	SINE	Alu	Yc1	tttctgttccacgcatgttgcccacattcactgcgtaaaaggcaaagggaactgtgagtacccacaaagaacctgatattgacggcacatacatttcttc<br>attaggaagaataaatttagactgtaacaatttaaaaaaccagaaaatacaactgtacattttagttcttattaaaatccaagaggtttaacttatttgc<br>tccttgtttaggtaattagtgtctaaaacatttcaaagataacatatatagtggctacgatttctagtactttttaaaaattcaagcccagtctcttcta<br>attaaatgtataaatgatttatctctgtctttcttaaaaagaaccaagagccccaattaaaaagtaaaacttaaatttcctcttaaaa<font color="green"><u>AATTGTTACGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAAATACAAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AATTGTTACGTC</u></font>aaaattatctaataaaccatagttcagaaaataatttctgaattaagaaaatatgaagaataaaaccaaca<br>gtttatgtgctgaatttcacatttttattttttattatttttaaaattttgttttaagttctagggtacatgtgcaggagtgttacgtagggaaacgtgt<br>gccatggtggtttggtccacctatcaactcatcacctcagtgttaagcccagcacgcattagctatttttcctgatgctcctcccccacccgccctgaca<br>ggccccagtatgtgttgtttcccttcctgtgtccatgtgttctcactgaacctcacatttttaaatacagcatatgccaggtgtcatttcagtacccata<br>attatacatagtatatg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	22390426	22390733	1001136	0	-	pAlu15-22257287; RIP_Alu_chr15_022_01	NA	NA	SINE	Alu	Yb7	ggccacacagcagttcagttttcttccagacagcccttcccattacaggcccagtggcctaggaagacagaaggacttctggggacaggctggctgggcc<br>actgtcctgtaccacgtcagggtgctaattccagctgcattggctcaaatgcccaaggtgatctggctctgaaaggtataaggcccagaccttagaggtg<br>atcatgtggtgataattatataggcttacagaaatgaagaactgtggagtcttggcagcctccacaaatttcaaaggatttcttcaaaagcctggtagtc<br>tagagacttgtgataagggcagatctactgaagagagccctctatagagggataccaaacacaaatgtggaactggaactgctgca<font color="green"><u>AAGAGTTCACCAGG<br></u></font><font color="red">GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGAGTTCACCAGGG</u></font>gcaatgccaagcgaagccgcggaagtgaggtccctgcagagagtcctcatatgagtaatgcctagtgaagcagagga<br>agtggtaccactgccagaaccccagaagtgtcgagtctgcatgcaatgcctgcctgggaaaaacctgaggtagctgactgcaaccagtacagcacccatg<br>gggactctaccaagcaaagtcatagaataacactgcctgatgttttgtgagtccaaccctcaccccagtgtgttcagaagtcagatacagagaataaaat<br>atattccaggtttaacatataatgttgaccctgctggattttgaacttgcttgggacctgttacattttaaattttgtctatttctctcttttggaacat<br>gtacattat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	32796326	32796644	1001137	0	-	pAlu15-32588079; RIP_Alu_chr15_032_03	NA	NA	SINE	Alu	Ya4b	tttcagccttcctcatctcctttctgggcctccttgtctctcattactcacttttcctcccaggtcatgctatccacggccccatttcaaatacccagag<br>ctctcttatggaactggggctgaaagcaagctggagaagtcatgaccagtaagatcttaggggtcagttgtagaggggaggtgccctttgaaaggttata<br>tatgttaaaagagaagcctaaaaaggtggaacttagaggaactatatttttaaggctggaattgcaggtgtcttggcaggatggggatggaggaagaggg<br>atatgattgttttggaaggagaggtatcttctttccagcgccctcaaaaacacactctgtgtgtcatcttctattcttctcctt<font color="green"><u>AGAAAGCCACTGCTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGCCACTGCTTGG</u></font>gtcattcaaatgaaaggcactttgagtgttttaaaaaactaggtttcattttatattgcttgat<br>tctttctcagaacttgtgcctaggcttgaaaacatgtttatcggtaaacattagacatacttttagcaacaagcagtctggtaaacctttccagggtttc<br>tggcagatctgctcagggcagcccatttctgctcttttttttttttttttctttttttaactctttcttaaaacaattgtcctccaggaaacctacctgg<br>tcctgccaatcacattactgcatctcctgggcaatctggatcaaatagttaaacactccacgttaaagggaaaatgcacgcaagtacactcagcacaatg<br>acctgcacatgagaacttct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	43836225	43836521	1001138	0	-	pAlu15-43627967; RIP_Alu_chr15_043_02	NA	NA	SINE	Alu	Ya1	agaatggaaccaagttagaaaacactcttcaggatattatccaggagaacttccccaacctagcaaggcaggccaacattcaaattcaggaaacatagag<br>aacaccacaaagatactcctcgagaagagcaaccccaagacacataattgtcagattcaccaaggttgaaatgaaggaaaaaatgttaagggcagccaga<br>gagaaaggtcgggttacccacaaagggaagcccagcagactaacagcagatctctcgggagaaaccctacaagccagaagagagtgggggccaatattca<br>acattcttaaagaaaagaatcttcaacccagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatccttt<font color="green"><u>AAAGACAAACAAAT<br></u></font><font color="red">ACCGGCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGAGGGTGGATCACAAGGTCAGGAGATCGAGACCATCATGGCTAACA<br>CAGTGAAACCCCATCTCTACTAAAAATATAAAAAATTAGCCAGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGTAGGAGAATGG<br>CGTGAACCCGGGAGGCGTAGCTTGCAGTGAGCCAAGATCCCACCACTGCACTCTAGCCGGGGTGACAGAACAAGACTCTGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>GACAAGCAAAT</u></font>gctgagagatgttgtcaccaccaggcctgccttacaagagctctcaaagaaagcactaaacatggaaaggaacaaccggtaccagccat<br>tgcaaaaacatgccaaattgtaaagaccattgatgctatgaagaaaccacatcaattaataggcaaaataaccagctaacatcataatgacaggatcaaa<br>ttcaaacgtaacaatattaaccttaaatgtaaatgagctaaatgccccaattaagacacggactggcaaactggataaagagttaagatccatcagtgcg<br>ctgtattcaggagacccacctcacatgcagagacacacataggttcaaaacaaagggagggaggaagatctaccaagcaaatggaaagcaaaaaaaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	51969633	51969936	1001139	0	-	pAlu15-51761375; RIP_Alu_chr15_051_01	NA	NA	SINE	Alu	Ya1	aaaaacccatcaaaaaatcaatgaatccaggagctggtttttttaaaaggtcaaaaaatagataggccactagccagactaacaaagaagaaaagagaga<br>agaatcaaacagacacaataaaaaatgataaaagggatatcaccactgatcccacagaaatacaaactaccatcagagaatactataaacacctctacgc<br>aaataaactagaaaatctagaagaaatggataaattcctggacacatacactctcccaagtctaaaccaggaagaagtcaaatccctgaatagaccaata<br>acaagttctgaaatcgaggcagtaattagtagtctaccaacccaaaaaagtccaggaccagatggattcacagccaaattctaccagaggtac<font color="green"><u>AAAGAGG<br></u></font><font color="red">AACTGGTAGCTGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCATGGCGGGTGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCT<br>AACACAGTGAAATCCCACCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGATGGCAGGTGCATGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGA<br>ATGGTGTGAACCCAGAAGGCGGAGCTTGCAGTGAGCCAAGATCATACCACTGCACTCAAGCCTGGGTGACGCAGTGAGAATCCGTCTCAAAAAGAAAAAA<br>AAAA</font><font color="green"><u>AAAGAGG</u></font>cgctggtaccattccttctgaaactattccaaacactagaaaaagagagaatcctccctaactcattttatgaagtcagcatcatcctg<br>ataccaaaacctggcagagacacaacaaaaaaagaaaatttcagatcaatatccctgatgaacatcgatgtaaaaatcctcaataaaatactggcaaatc<br>gaatctatcagcacattaaaaagcttatccaccacgatcaagttggcttcatccctgggacacaaggctggttcaacatatgcaaatcaataaacataca<br>ccatcatataaacagaaccaatgacaaaaaccacgtgattatctcaatagatgcagaaaaggcctttgacaaaattcaacacccttcatgctaaaaactc<br>tcaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	57500191	57500509	1001140	0	-	pAlu15-57291945; RIP_Alu_chr15_057_01	NA	NA	SINE	Alu	Ye5	tgcccattttcctccagaaactaaggtcctccccaggttgtcctgcctttaaagcagagccatcatggacttaaggacctttctgacctacagtgatggg<br>gtccacatctactcccacacaagaatctttgttcaagctgtcagggatctgcctttccactgagctccaattctacctagaacattgcccgtcgaagtgt<br>gatctatgcacaagaacacgagcccctctactgttaggaatgcagagttcaagggtcccaacctgggtctacaggatcagaatctgcattttaacaagac<br>ctcctgctgattcgtatgcacatttaagtctgagaagtactggcctagagaacgtgaccccaccagaacacagtagagcacgttcttc<font color="green"><u>AAGAGCCTTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGCCTTCCT</u></font>tggcttcgtcactggatgagtgatactgggggtaggaaccctgtcattaaaatcattgggattatacaa<br>taaatcttataaagcactgggaagaaatgtgataaaaatgaagaaacgaaaggaaaaattctctctaggctgacatttggtatgcaacaacatgcaactg<br>gtatttggtataaaatgtgtttgtttttccgttagactcagctgtcctaatttgaaagagcctccaaaaatatcagttgctatttagcttcccttagtta<br>agggttgtttaattttgttagacaatgaagctaattctcatcactgcaacaggaagaacaatgacatgaacccacaaaagatgtccccgcctacatatgg<br>ttacagtggcataagctgg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	64420879	64421187	1001141	0	+	pAlu15-64212624; RIP_Alu_chr15_064_01	NA	NA	SINE	Alu	Ya5	taaaatttctaacatgtccttgatatattaatggtagcatataaaatttggcataaaatttaccatttcctagggtctgactattactcagcagctttgc<br>ctgccttctttccaaggccagttgtttatttctctcaattctttgttgttgctcttctgttaggcttctacttaactcagaagcaaacatctcactttca<br>gataagtttgtcagaaagggatctaattcagtagaagtgacatcatgttcattattctccgcaacttcatctgcaatagaaaagaaatagtacatctgtg<br>gtgttagactagttagagaagggcttctcattgaaaaagaatttaaagtggcaaggtgacagacctgaaaaaacaatttgtgaagtat<font color="green"><u>AAGAATGTTGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAATGTTGTG</u></font>aatacatgcttgattcaattaaataagaaatatttataaatcagtttaaagaggaatgctaagtcaaataaaaatacaa<br>tttaaaatatgcatgaaggccgggcgcggtggctcacgcctgtaatcccaacactttgggaagccgaggcgggtggatcatgaggtcaggagttcaagac<br>cagtctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcatggtggcgcatgcctataatcccagctactcaggaggctga<br>ggcaggagaattgcttgaaccgggacccgggaggcggaggcagcagtgagcaagattgcgccactgcactccagcctgggctacagagcaagactgtctc<br>aaaaaaaaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TIPIN:NM:017858:6/8	
0	chr15	25989730	25989731	1001142	0	+	pAlu15-73350451; RIP_Alu_chr15_025_01	NA	NA	SINE	Alu	Y	gcgcctctgcccggccgcccctactgggaagtgaggagcccctctgcccggccaccaccctgtctgggaggtgtacccaacagctcattgagaatgggcc<br>atgatgacaatggcagttttgtggaatagaaaagggggaaaggtggggaaaagattgagaaatcggatggctgctgtgtctgtgtagaaagaagtagaca<br>tgggagacttttcattttgttctgtactaagaaaaattcttctgccttgggatcctgttgatctatgaccttacccccaatcctgtgctctctgaaacat<br>gtgctgtgtccactcagggttaaatggattaagggcggtgcaagatgtgctttgttaaacagatgcttgaaggcagcatgctcctt<font color="green"><u>AAGAGTCATCACCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATGACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAGATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAGTCATCACCA</u></font>atccctaatctcaagtaatcagggacacaaacactgcggaaggccgcagggtcctctgcctaggaaaaccagagaccttt<br>gttcacttgtttatctgctgaccttccctccactattgtcccatgaccctgccaaatccccctctgtgagaaacacccaagaattatcaataaaaaaata<br>aattaaaaaaaaaaaaagaaaaacacctaggaatacagctaaccaaggagttgaaagatttctataagcactacaaaacattgctgaaagaaatcagagg<br>tgacgcaaataaatagaaaaacatttcatgctcatggactggaataatcaatatcataaaaatgtccatactgcccaaagcaatgtacagattcaatgct<br>attcct	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:OCA2:NM:000275:2/24	
0	chr15	75697928	75698291	1001143	0	-	pAlu15-75486694; RIP_Alu_chr15_075_01	NA	NA	SINE	Alu	Ya5	ctcactcatgcgcatgtttcctttcaaagaacattcacgggggtctgttctgtgtcacacttcactctgagctacagacatactctctgcccctgggtac<br>ctcactctctagcaggtgagacacacacacccatgactgaaccaggattacattacaggagagatgccaaatgctgaggctttggagcatatttccctct<br>ttgctcaaggtcactaggaagctctcacctttcgtcattaggcaggacttggtggcattctttcctgactggcttcccttttttagcttttatcttctta<br>tcatcttgtagcataatttttctgtcagttggttcaaatcactatgggaatgaggtgtgctatataccagtttcataaaatcactactat<font color="green"><u>AAGAATAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAACAG</u></font>gtgttggggacaagaggtgatatct<br>gactgagtaggtcaaggatggcctcctggaggaggtggcctttggggtggaaggttgcaaaggctgctggggcaggagtctgggacagttctccagaaca<br>agatggcttagaggtaggagtgtgcaggacaaagtggggaggcccaggtggctttgctcagggactggtgggaaaagaggtgggtgggcaggttgaggcc<br>cggtggtgcaagcttcctgtgtgccagattcgtgtctgtataagaggggcttaccagcacctcggggtggcccgtgtcctcactagcccccctcattccc<br>cagccttctctccagcagctccccccacccgccagcctggccctgagctggatgctaaaagtcct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LINGO1:NM:032808:1/2	
0	chr15	89203117	89203420	1001144	0	+	pAlu15-88989245; RIP_Alu_chr15_089_01	NA	NA	SINE	Alu	Yc1	gagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcttggtggcacttgcctgtaatcccagctact<br>caggaggctgaggcaggagaatcgcttgaacccatgaggcagagctgcagtgggctgagatcgtgccactgcactccagcctgggtgacagagtaagact<br>ctgtctcaaaaaaaccaaaaaacaaattatccaggcttggtggcacatgcctgtaatcccagctacttgggaggctgaggcaggaggatcgcttgaacct<br>gggaggtggaggttgcagtcagctgagatcgtgccactgcactccagcctgggcaacagagtgagactccaaaaaaagaaagat<font color="green"><u>AGAAATGTCTTTCATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGATTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AGAAATGTCTTTCATA</u></font>atgtaagaaactagattttttttttttgtaatagggaagggttgaattctagtagaagctgaaacccagataaaaagatt<br>gcgaatacccaaatccaatcatagggagccaagtgaaggccatcctgggagccgcatgatggcagcacacagctggagctctaacagttcctggcaccta<br>gagccaaacggacaggggaactgggttttcacaatcaattgtattgatctaggaaaactgaaaccaaattactatgtggggcaagaggcttaccggaaag<br>tgctgggctatctggtcctggtggggaggaggaagggtgcttgtgttctcaggcctggatctgaggaagtgggtgcagagatgcaatggcaccatccctg<br>gctg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	100150066	100150368	1001145	0	+	pAlu15-99925171; RIP_Alu_chr15_100_01	NA	NA	SINE	Alu	Ya4	acactgaagcttcctaacaaacagaaagaaatcttacactcttgcttgttagtatttaatacatgcattatgtgctttttaattttttggtcctactaag<br>gagtagctgatagcgctgttttgaaggcatatctactgtgcctctgactagcaataggaaaccggttaagttattcaacctctctacatttcagtttcag<br>gaaatgaagtggacaaagaagatcatcattaggcaatatgtacctccaatattctgtattatgtggagatatcaagtccgtatgtgattacacaaatcat<br>agtccaaaagagttcagaatgagacatatagaattgaaagtcctatttatacagatactggttaaagcccagggattagatgggttt<font color="green"><u>AAAATGCTTTACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGAAAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAATGCTTTACC</u></font>tctatatagaaaggagtacaggaccaggaaagggcccaggggcataccatgattgagccgaggagacagtaagagagtttcagt<br>gacaaaggagatgcaaggagacgatggggtttctgaaaccaggagaagaaagccttcatcatagaagcaagtgataaacttcactgaacacttctaagac<br>atttcggacaagaatagaagagcgacctttggatttcactgcacgtagcttaacaaacgttcataaaggcagtgaaaacggaagctcggttagggtggtc<br>ttaggagagaatccaggtgatgacgtagagaatgcgactatagatggctctctctagaagttttacttttaagggtagcagagaactagagtagagctgc<br>aga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	80745749	80746034	1001146	0	-	pAlu15-80763068; pAlu15-80533022; RIP_Alu_chr15_080_01	NA	NA	SINE	Alu	Sg	tgggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggtgcccgccaccatgcccagctaatttttctgtttttagtagaaacggg<br>gtttcaccatgttggccaggctggtcttgaactcctgaactcaagtgatccacccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgc<br>accaggccatgaaacactttcttccacccacggctttctcttctctccccatttacagcaataagacagcctaacctgggaaagagagagagagggaagc<br>tacttccaaatggatgcctgtccccatcagtaataaccaagtctattcaagtgctagatgttaactttaaaagaaggaaacatcaa<font color="green"><u>AAGTCCAAGTTTCA<br></u></font><font color="red">GCCGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTAGGAGGCTGAGGTGGGTGGATCACGAGGTCAGGAGTTCAAGACCAGCCTGGTCAATATGGT<br>GAAACCCCGTCTCTACTAAAAATAAAAAATTAGTCAGGCATGGTGGCGTGTGCCTGTAGTCCCAGCTACTCGGGAGAGGCAGAAGATTCGCTTCAACCGG<br>GGAAGCAGAGGTTGCAGTGAGCCAAGATCGTGCTACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAGTCCAAGT</u></font>tcgc<br>ctagctttgtcaggaatgtttttaccctcagtctgtaagtgtgaccaaatatattttttaaaggtttaccctcaatctgttaagttcaaaggtttactat<br>aatctcttcataagaaaactattggaaagatggaataaaatacacagaaatgtccttaacaggtaaatatttatttttctttcttattattatactttaa<br>gttctggggtatatgtgcagaacgtgcaggtttgttgcataggtacacacgtgccatggtggtttgctgcacccatcaactcgtcatctacactaggtat<br>ttctcctaatgctatccctcccctagccccccaacccccaacaggccccagtgtgtgatgttcccccctccctgtgtccgtg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LOC80154:NR:026811:1/8	
0	chr15	88760820	88761113	1001147	0	-	pAlu15-88546943; RIP_Alu_chr15_088_01	NA	NA	SINE	Alu	Yb3a1	aggacttcatgtctgaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaacgaaagagcttctgcacagcaaaagaaac<br>taccatcagagtgaacaggcaacctacagaatgggagaaaatttttgcaatatacttatctgacaaagggctaatatccagaatctacaaagaactcaaa<br>caaatttaaaagaaacaaacaaccccatcacaaagtaggggaaggatatgaacagacactttgcaaaagaagacatttatgcagccaacagacacatgaa<br>aaaatggtcatcactggccatcagagaaatgcaaatcaaaaccacaacgagataccatctcacaccagttagaatagtgatcatt<font color="green"><u>AAAAAGTTAAGAAAC<br></u></font><font color="red">AGGCTGGGCACAGCGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GAGAACTCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGGGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACACGGGAGGTGAAGCCTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAAAG<br>TCAGGAAACA</u></font>aacaggtgctggagaggatgtggagaaataggaacacttttacactgctggagggactgtaaactgcttcaaccattggggaagacagtg<br>tggcagttcctcaaggatctagaactagaaataccatttgacccagccatcccattactgggtatgtacccaaaggattataaatcatgctgctataaag<br>acacatgcgcacgtatgtttactgcagcaccattcacaatagcaaagacttggaaccaacccaaatgtccatcaatgatagaatggattaagaaaatgtg<br>gcacatatacaccatggaatactatgaagccataaaaaaggatgagttcatgtcctttgtagggacatgggaacatcacacactggggcctgttg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:IQGAP1:NM:003870:2/38	
0	chr16	11909838	11910148	1001148	0	+	pAlu16-11968670; RIP_Alu_chr16_011_01	NA	NA	SINE	Alu	Ya5	aaaaatacaaaaattagctggggatggtggtgcacacgtgtaatcccagctacctgggaggctgaggcaggagaatcgcttgaaccaggaaggcagaggt<br>tgcagtgagccaagatcgtgccagtgcactccagcctgggcgacatagagagattcatctcaaaaacaaaaaagaaacaaaaaaccatttaaataacatt<br>taaaatacacaaaccaaaaccatttcagataccctcaaaaaagtacaaaaataacagaaacagccgggtgcggtggctcacacctgtaatcccagcactt<br>tgggaggccgaggtgggtggctcacttgaggtcagtagccaccaagaccatcctggccaacatggtgaaaccctgtctctactaaa<font color="green"><u>AATACAAAAATTAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGACTGAGGCGGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AATACAAAAATTAG</u></font>ccaggcatggcggtgcgcacctgtcatcccagctactcaggagactgaggcaggagaatcgcttgaacccgggag<br>gtggaggttgcagtgagccgagatcacgccattgcactgcagccggggcaacaaagggagactccatgtcaaaaataaaaaaataaccgaaacatttttc<br>tgctaccaaaattaaccacctaaaggcaatggacaagtagtatggtaacatactggagttctacagaaatattcaaccaggaaattacccagtgacattc<br>tgcagaatgcgctttttttttttcaagtgaagcgacatacaattacctagtgggaatgtggtttggaagtgagtgtcaccactgttaggtcaggtgctcg<br>ggaaagcctta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GSPT1:NM:002094:1/15	
0	chr16	31892766	31893090	1001149	0	+	pAlu16-31982109; RIP_Alu_chr16_031_02	NA	NA	SINE	Alu	Yb7	gatcaggactgaacacacaggaatcaccatggagtttgtgctgagctgggttttccttgctgctattttaaaagttgatttatggagagctagagagatt<br>gagtgtgagtggacatgagtgagagaaacagtggatatgtgtggcagtttctgaccttagtgtctctgtgtttgcaggtgtccagtgtgaggtgcagctg<br>gtggagtctgcgggaggccttggtacagcctcggggggtcccttagactctcctgtgcagcctctgaattcactttcagtaacgcctggatgagctgggt<br>ccgccaggctccagggaaggggctggagtgggttggccgtattaaaagcaaagctaatggtgggacaacagactacgctgcacctgtgaaa<font color="green"><u>GGCAGATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GGGAGATTC</u></font>accatctcaagagatgattcaaaaaacacgctgtatctgcaaatgaacagcctgaaaaccgaggacacggc<br>cgtgtattactgtaccacagacacagtgaggggaggtcagtgtgagcccagacacaaacctccctgcaggggcgcgcggggcaaccagggggcgctcggg<br>acccactgaggacgggacaggtcccaggagcaggtgccgggagaggtttcctttctcctcagctggaaaagtcacgtttatcttcgcaggactctggagt<br>cttctaggctgtgatattttgttacttatatttattatgaactttatcattaatatttaaattttagtaattattaacattctacatattattatatttt<br>taagtatatactttcaagaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	32708826	32709133	1001150	0	-	pAlu16-32798404; RIP_Alu_chr16_032_02	NA	NA	SINE	Alu	Yc2	aagccactgacttgtagacattaatgagtgcactctacactatgtaaattatatctcaataaatcctttcaaaaatacacagaagagtaaggggttttgg<br>aatgctgcagctgggaggcagtttgaaatactgaataggcctcatcgagaatgtgaagtttcagtaaagacttgaggaagttgaatgagctgatcaatgg<br>atatatggagggctatctttccaagccaagaaattaactagagtcttgaccataaggcagcagcatgttggcatgtccagaggacagtgaggtggccagg<br>accactggtaagatcaagggtgaagatataaaagaattttggcagttaacatgtggcagatgatgatgggcttgcagatcattgt<font color="green"><u>AAGAAATGTTGTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTTTCAAAAAAAAAAAAAACAAAA<br>CAAAAAAA</font><font color="green"><u>AAGAAATGTTGTTTT</u></font>tagtgtacatgaaatggggagacaaatcattatcccattatcaatattttaataaattggatccatgaaccaaatcc<br>aatgagatcaaatcaattaataataatatgcaaatttgtattaaaattaaaagaattacttgcacatttgagaacaggagagacatgatttttatcagca<br>ataataaacattattaattttaattgtgatcagctaattgagattaattgcaatacatcatgctttataatgtgactgccaaaaggaaaatatgattgta<br>atcttatactacatctatcaatgtcttttatacataagagtatagagtaagcccgtagttttcaaagccaacctatgaagcagtgacatcttatgcaagt<br>ttgctgct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	33243048	33243049	1001151	0	+	pAlu16-33330708; pAlu16-32335202; RIP_Alu_chr16_033_01	NA	NA	SINE	Alu	Ya5	tcgctggcttttgaatgccaacaatcatattctttataaggcacagggaagatttttctaaagaacaagtatgtgaacctgaaaagtaatcaccacttgg<br>tagtgacaatatggatagggtgaagggcgtcaccaagaagcaatgaaaagatacatttgcagttaaatttgaaaaccatgatgtttaatacatatagtaa<br>taaagaatactttctcctgtttcaaaattattttagaatttaagatagaagctaaaatacctagggataatgatatgactattgaaaattaaaaattaaa<br>ggacattttgagtattagaagttaagaatgagaacttattacccaatgaacaggggataattcattatgctccatatccattgaatt<font color="green"><u>AAAAGACAGGCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATAGAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAGACAGGCCC</u></font>attacctggataatttgaaagtttaattttatttaaaagtcttgtttcattcatcaagctaaaggattagctcccagaaatattctag<br>gattgcatatccccaactctgtaggaagtatagaaagaatgttataagggccaccacctaaacattattatgtaaataatttagtaccattccatttgcc<br>tttgtagatttaaaaatgtaaatggctttctcatattaggaaacatcatttttcaaaacccagataaacatagtatattgcaagagaataattattttct<br>ttattaaaaaagaaatactggatgctaagtccaaaagacataaattattttatactaataactaccaacattttattcattaaaatataaaggtcaaag	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	49924454	49924455	1001152	0	+	pAlu16-56162982; RIP_Alu_chr16_045_01	NA	NA	SINE	Alu	Yb7	aaaccgctcaactacatggaaactgaacaacctgctcctgaatgactactgggtacataacaaaatgaaggcagaaataaagatgttctttgaaaccaac<br>gagaacaaagacccaacataccagaatctctgggacacatttaaggcagtgtgtagagggaaatttatagcactaaatgctcacaagagaaagcaggaaa<br>aatctaaaactgacaccctgacatcagaattaaaagaactagagaagcaagagcaaacacattcaaaagctaacagaaggcaagaaataactaagatcag<br>agcagaactgaaggagatagagacacaaaaaacccttcaaaaaaatcagtgaagccaggagctggttttttcaaaagatcaacaa<font color="green"><u>AATTGATAGACTGCT<br></u></font><font color="red">GGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AATTGATAGACTGCT</u></font>agcaagactaataaagaagaaaagagagaagaatcaaacagatgcagtaaaaaatgataaaggggatatcaccaccgatccc<br>acagaaatacaaactaccatcagagaatattataaacacctctatgcaaataaactagaaaatctagaagaaatggataaattcctcgacacatacaccc<br>tcccaagactaaaccaggaagaagttgaatctctgaatagaccaataacaggctctgaaattgaggcaataattaatagcttaccaaccaaaaaaagtcc<br>aagaccagacggattcacagccgaattctaccagaggtacaaggaggagctggtaccattccttctgaaactattccaatcaatagaaaaagagggaatc<br>ctc	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	80403155	80403459	1001153	0	-	pAlu16-81584455; RIP_Alu_chr16_080_02	NA	NA	SINE	Alu	Yb3a2	ggcatgggcaaagacttcatgactaaaacaccaaaagcaatggcaaaattaacaaatgggatctaattcagctaaagagcttctgcacagcaaaagaaac<br>tatcatcagagtgagcaggcaacatacagaatggaagaaaaattttgcaatctatccatctgacaaatggctaatatccagaatctacaaagaacttaaa<br>caaatttacaagaaaaaacaaccccatcaaaaagtggacaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaagaaacgtaggaaa<br>aaagctcatcatcactggtcattagagaaatgcaaatcaaaactacaatgagataccatctcatgccagttagaatgacgatcatt<font color="green"><u>AAAAAGTCAGTAAA<br></u></font><font color="red">TAAACAACAGGCCGGGTGCGGTGGCTCACGCCTGTAATCTCAGCACTGTGGGAGGCTGAGGCGTGTGGATCACGAGGTCAGGAGATCAAGACCATCCTGG<br>CTAACACGGTGAAACTTCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCAGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGACAGGA<br>GAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCTGAGATAGCGCCACTGCAGTCCAGCCTGGGCAAAAGAGCAAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAAGTCAG</u></font>caacagatgctggagaggatgtagagaaataggaatgcttttacactgttggtaggagtgtaaatcagttcaaccattgtg<br>gaagacagcgttgcaattcctcgaggatctagcaccagaaataccatttgatccagcaatcctattactgggtataaaccgaaaggattgtaaatcattc<br>tactataaagacacatgcacacatatgtttattgcggcactattcacaagagcaaagacatggaaccaatccaaatgcccatcgatgatagactggataa<br>agaaaatgtggcacatatacaccatggaatactatgcaaccataaaaaaggatgagctcatgtcctttgcagggacatggatgaagctggaaaccatcat<br>tctca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PLCG2:NM:002661:2/33	
0	chr16	34193930	34194231	1001154	0	+	pAlu16-35376640; RIP_Alu_chr16_034_01	NA	NA	SINE	Alu	Yc2	agcaggtggctacagtgatacaggtttgtgtagcatttctcctaagttctcaaaactttgaaacttctctgccttctttttacaattgtttaaaataaat<br>tgtgtggttttctaaacattccagtctagacaagacatgccttcagaggatgttttatctttacaagtctctctcgttaatcttgacatgaaatgttacc<br>ctgatcgtgtggactatattgataaagttctagaaacagcagcggagatattcaataagctcaaccttgaacagtaagttacattttttgtaaaaatctt<br>cataaagacatttttgtcttagatttgcttttctttctcaattgttttttgaactgctggcatttgtcttgttttaatcatgcattaaga<font color="green"><u>TTGTCATGCT<br></u></font><font color="red">GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCAGAGGTCAGGAGATTGAGACCATCCTGGCTAACATGGT<br>GAAACCCCGTCTTTACTAAAAATACAAAAAAATTAGCCGGGCGTGGGCGCGGGCGCCTGTAGTCCCGCTACTAGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCTGGGAGGCGGAGCTTGCGGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGGTGATAGAGGGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>GG</font><font color="green"><u>TTGCCATGCT</u></font>tagcactactaggggcagaaagtggtgaccaattacttgtttttttatattaatgaaattgtggtacctatggaccataggcagtctt<br>cagggaccagtgcctccaatttggatccctctctgtgtgtcaggggcgtccaatcttttggcttccctgggctgcactgaaagaagcattttcttgggcc<br>gcacataaaatacactaacactaacaatagctgatgagcttaaaaaaatcgcaaaagctcataatgttttaagaaaattacaaatttgtgttgggccgca<br>ttcaaagctatcctgggctgcatgcggcctgtgggctgcggtttggacaagcttgctataagtgaatgagtttgttcttaaactggtaaggaaactttgt<br>ca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	30119159	30119479	1001155	0	+	pAlu16-29470755; RIP_Alu_chr16_030_01	NA	NA	SINE	Alu	Sx	gtttccacatgtgaggggcatgaggggggctcaaggaggggagcatcggggagaggagcgcactgggtggaggctgggggtcccagcaggaaatggtgag<br>acaaagggcgctggctggcagggagacagcacaggcaggccctagagcttcctcagcacagctggactctcctggagaccttcacacaccctgatatctg<br>ggccccgcgctacgagggtgctttcactggtctgcactatgccccaggccctgggattttgaacagctctgcaggtgactgaaaggtgcggccaggctgg<br>ggaacgacctggtttcagccccagccccgccactgactgactttgtgagtgcgggcaagtcactcagcctccctaggcctcagtgacttccctgaaagc<font color="green"><u>A<br></u></font><font color="red">AAAACTCTGCAAAGGGGCAGCTGGGTGCTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGTAGACAAATCACTTGAGGCCAGGAGTTCTAGA<br>CCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAGAAAAAAAAAAATTAGCTGAGCATGGTTGTACATGCTTGTAATCCCAGCTACTTGGGATGC<br>CGAGGCGGGAGGATTGCTTGAACCCAAGAGGTGGAGTTTGCAGTGAGCTGAGATTGTGCCACACTGCACTCCAGCTTGGGTGAGAGTGAGACTCCATCTC<br>AAAAAAAAAAAAAAAAAGAG</font><font color="green"><u>AG</u></font>gaatcccactttcttgctgttgtgatggtggtaagggaacgggcctggctctggcccctgatgcaggaacatggagct<br>gatccaggacacctcccgcccgccactggagtacgtgaagggggtcccgctcatcaagtactttgcagaggcactggggcccctgcagagcttccaagcc<br>cgacctgatgacctgctcatcaacacctaccccaagtctggtaagtgaggagggccacccaccctctcccaggcggcagtccccaccttggtcagcaagg<br>tcgtgccctcagcctgctcacctcctatctccctccctctccaggcaccacctgggtgagccagatactggacatgatctaccagggcggcgacctagag<br>aagtgtaaccgggctcccatc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SULT1A3:NM:003166:3/10	
0	chr17	5405476	5405786	1001156	0	-	pAlu17-5409430; RIP_Alu_chr17_005_01	NA	NA	SINE	Alu	Yb7	caggtgtggcccatctggctaccacaggcagaggtggttggagtcacccaccctgccatctgggtgtttccctgggcagtaacaggaggctgcacccctc<br>agccggattcagacagaattaggaccactgcgctggaagctctagcagacatggcctgcatggctaggagaggcggtggtgggtggagtcacccaccctg<br>ccttcagagtgtttctcggggaaccgggagtttgcctctgctggctgagttcagacagaagcagactgctagcagacattgcccgcctggctaccagtgg<br>cagggatgggcagagtcaccccctctgctgtccaagtggggaacctgaacaaaataatatcccaaagaacagtttcatggcaagtat<font color="green"><u>AAAAACCACATGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAACCACATGG</u></font>catgctttttgatctatcaagagcaaaggtaggaaaacttgtttgagtaaaagacaagatagtaggctgggtgcag<br>tggcccatgcctgtaatcccagcactttgggaggctgaggcgggcagatcacgtgaggtcaggagtttgagaccagcatggccaacatggtgaaacccca<br>tctctacaaaaatacaaaaattagctggcgtgatggcgggtacttataatcccagctactctgggggctgaggcaggagaatcgcttgaccctgggaggc<br>ggaggttgcggtgagccgagatcgtgccactgcactccagcctgggtgacaagagagaaactctgcctcaaaaaaataaataaaataaaatgaaattcac<br>ctaaggagaga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NLRP1:NM:001033053:3/16	
0	chr17	6815461	6815758	1001157	0	+	pAlu17-6819420; RIP_Alu_chr17_006_02	NA	NA	SINE	Alu	Ye5	aaaacaatgggagagacagacaacattataccttcaggaagaaataatttgagtgacagcagatttctcatcagcaatcacagaggccacaaggaagtag<br>aacagccttttttaaatacagtcacacatcacttaaccacagggatacattctgagatgtacatcactctgagaaatgcatcactagccaatttcagtgt<br>tgtgcatacatcatggagtgcacttaaacctagacggtataacccactacacacctagactatatagtatagtccattgctcaaacaacctgcacaacac<br>gttactatactgaatattgtaggcaactgcaacacaattgtaagtatttgtgtatctcaacacagaaaatgtacagtaaaagtatggtattaaaga<font color="green"><u>TTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTCGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAGGCGGAGCCTGCAGTGAGCCGGGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAGG</font><font color="green"><u>TT<br>CA</u></font>aaatggcatacctgtacagggcactgaccatgaatggaacttgcagaactggaagttgctgcagatgggtcagtgagtgagtggtgagggaacgtgaa<br>gacccagggcattgctggacactcctgtagactttataaacattgtacatctcccctacactaaatttatctttaaaaacttcttttggccaggcacggt<br>ggctcacaccgtaatcccagcactttgggagcccaaggcgggcagatcatgaggtcaggagctcgagaccaacctgactaacatgctgaaaccccgtctc<br>tactaaaaatacaaaatgtagccaggcgtggtggtgcccgcctgtaatcccagctactcagaggctgaggcaggagaatcacttgaacccgggaggcg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	15804312	15804616	1001158	0	+	pAlu17-15806542; RIP_Alu_chr17_015_02	NA	NA	SINE	Alu	Yc1	gttgttcttttttaaaaaatccaggttctattaaaaggtcatgcttgcatttaatatgttcctttaatctgaaagagttcctcagtcttttgtttgtttt<br>agtctttcaagacattaacattttcctccgggcacggtggctcacacctgtaatgggagcctgagcaggaggatcatttgaggccagaagttcaagacca<br>gcctgggcaacacagcgaggccccatctctatgaaaattaagaaaattagtcaaatgtggtggcgcatgcctatagtcctagctattcaggaggctgagg<br>tgggaggattgcttgagcccaggagttcaaggttacagtgagctattagattggtgcaaaagtaattgtggttttggccattaaaaa<font color="green"><u>AAGGCACAAATTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGGCACAAATTGG</u></font>gccgggcgcggtggctcatgcctgtaatctcagcactttgggaggcgaaggcaggcagatcatgaggtcaggagatcgaga<br>ccatcctggctaacacggtgaaaccccgtctctactaaaaacacacacaaaaaaattagccgggcatggtggtgggtgcctgtagtcccagctactcggg<br>aggctgaggcaggagaatggcgtgagtccaggagacagaggttgcagtgagccgagatcatgccactgcactccagcctgggcgacagagcaagactccg<br>tctcaaaaaaaaaagtctgggcgcagtagctcacgactataatcccagcactttgggaggccgaggcgggcgattcacgagttcaggagattgagaccat<br>cctggc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ADORA2B:NM:000676:1/2	
0	chr17	33650510	33650827	1001159	0	+	pAlu17-36307221; RIP_Alu_chr17_033_01	NA	NA	SINE	Alu	Y	ggtcggatcccttgagcccaggagttcaagaccagcctgggcaatataggaagaccccccccatatctataaaaaaatacaaatacgaatattagccagg<br>catggtggtacacgcctgtaatatcagctacttgggagggtgaggtgggaggatggcttgagaccaggagacagaggttgtggtagttgagatcatgcca<br>ctgccccccagcctgggtgacagagcgagactctctcaaaaaaaaaaaaagtaaaaagcaatccagctccaatactgatgtacttgtaagagtttatgcc<br>aaacttggtatctatttaaaaatcagctcatacgggaataagatttccagtcaaaatggactactttcatactaaaattataaggtc<font color="green"><u>TAAAACAGTTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAAGCGGGTGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCAGGCGTGGTGGCGGGAGCCTGTAGTCCCAGCTACTCCGGAGGGTGACGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGGCTGGGGGACAGAGCGAGACCCCGTCTCAAAAAAAAATAAAAAATA<br>AAATAAAATAAAATAAAA</font><font color="green"><u>TAAAACAGTTCTC</u></font>attttatagacactaatcgagttccacattctataccatgtttctttttagcatgttcttcccctgtaa<br>ctaactccattatttagcttctaatcttcatattgtctcataaagcaaatgtttttctctgaattaggagtatgacttatctcaattttaaactatagta<br>caaaaagaaaaaaaaactttaagaaaaacataaaaacgaagcctctttgaggagcctttcatgttcaaagtacttaatttttcaaataactcatcagctt<br>tattatgcgtattatattcattttatacttatgaaaatatgatttccctagtaccacaaaataagttaatcttggaagtggaattttaattgtgacattt<br>gcccgggtgtggtggctc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	42890378	42890672	1001160	0	+	pAlu17-45877357; RIP_Alu_chr17_042_01	NA	NA	SINE	Alu	Y	cgtgatcttggctcactgcaaactccgcctcctgggttcaagcaattctcctgcctcagcctcccgagtagcagggattacaggcatgcgccaccacacc<br>cggctaattttgtatttttagtaggggtggggtttctccacgttggtcaggctggtctcgaactcctgacctcaggtgatccgcccacctcagcctcgca<br>aagtgctgggattacaggcgtgagccaccgcgcccggcctgaagggtacttttgacaaactcagaggccccacagtacagggatgtacattcacaaacaa<br>ccaagagaaaaagagaacaagtaaacccctctcctcctttcagatgcaacactgaatggcaaaccaggggtgagaatacactaa<font color="green"><u>AAGTACATAGACCCTC<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCTGACTCTACTAAGAACACCAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTA<br>CATAGACCCTC</u></font>aaagagaggacaccagggctctgaccatctcaaactctgaaatttgatgaaggtaatccgaaattacaacccccaaggcacgaagcaga<br>tgcaaatatacatcctctctaaaagaaaatagtatcattttggctacaaattatttctacctttttttttttttttttttttttgagacaaagccttggt<br>ctatggcccaggctggactgcactggcgtgatctcggctcactgcaacttcctccttccagttcaagcaattctcctgcctcagcctcccaagtagctgg<br>gattacaggtgcccaccaccacacctggctaatttttgtatttttagtagatatgaggtttcactgtgtagaccaggctggtctcgaactcctga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	44583453	44583771	1001161	0	+	pAlu17-47570433; RIP_Alu_chr17_044_01	NA	NA	SINE	Alu	Ya5	gatgtgctttgttaaacagatgcttgacggcagcatgctcgttaagagtcatcaccactccctaatctcaagtacccagggacacaaacactgcggaagg<br>ccgcagggtcctctgcctaggaaaaccagagacctttgttcacttgtttatccgctgaccttccctccactattgtcctgtgaacctgccaaatccccct<br>ctgcgagaaacacccaagaatgatcaattaaaaaaataataataaaaaataaaaattttgcctttttcatattaccgtaagtattcactatgatgatcta<br>atcttttttttcaaggtaattaaatgatctcctgcttaaactgggtcccgaaggctaacatttcaaccattgtaccgtagttcctcaaa<font color="green"><u>AAGCTAATCTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGCTAATCTT</u></font>gctggatggtgctatgtgcttgcttttgactaaagattgttattggccgggtgtggtggctaacatttgt<br>aatcccagcactttgggaggccaaggcatgcggatcataagatcaagagatcaagaccatcctggccaacatggtgaaaccccgtctctactaaaaatac<br>aaaaattagccgggcatggtggtgtgtgcttgtagtcccagctactaaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtga<br>gctgagatcgcaccactgaactccagcctggcaacctagcgagactctgtcacaaaaaaaaaaaaaaaatcgttatcaacaaccaaaaaaaccataaaaa<br>tagttactctgtttcctct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:B4GALNT2:NM:001159388:3/11	
0	chr17	62951328	62951646	1001162	0	-	pAlu17-65938308; RIP_Alu_chr17_062_02	NA	NA	SINE	Alu	Yb7	aatggttggcaaagcatgcaggctgatgcctgctttgtaaataaagttttattggaacacagcgatgctcattcattctatggctgctttcatttacaat<br>ggcagagttgaatactttgagagactgtgtaacccccaaggctgaaaatatttattatctggccctttatagaaataagtttgcagaccgttgttctatt<br>ccacggctgggtccagtctgggccaccctcagctgttcatctagatctgttctgcccaggaccaaagctatttgctatgtgtggccactgagcctttgaa<br>gtgtggcccatggaatagagggattgaattttaaattttctttcattttaattcatttaaatttaagactggtgcttgattcagttatt<font color="green"><u>AGAAAACCTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAACCTTC</u></font>atatatgtttgaaacactttgggtatgtgaatctactttttcaactgggaattttatgaaatctaaataa<br>agatcaagtactgccaatgaaaatttagcgtctgacttgggagtgctgtttaagtctaaaatgcacactagatttggaagacttactacaaaaaaaagca<br>aaatagttcattaataatttttatgttgattgaaatgatatttttgtatactgggttaactaaaatatatttttaaaattaacttcacttgccttttttt<br>ttccttttctttcttatttttttagagacagggtctcgctctgtcatccaggctggagtgcagaggtatgaccgtagctcattgcagccttgacccccag<br>tgctcaagcgatccttcca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PITPNC1:NM:012417:1/9	
0	chr17	63434828	63435133	1001163	0	+	pAlu17-66421768; RIP_Alu_chr17_063_01	NA	NA	SINE	Alu	Y	agctcactgcatcctccacctcccagtttcaagtgattctcctgcctcagcctcctgagtaactgggattataagcgcatgccaccacacctggctaatt<br>ttttgtatttttagtaaagacagggttttaccatgttggccaggctggtcttgaactcctgacctcaggtgatccaccggcctcgggctcctaaagtgct<br>gggattacaggcgtgatccaccatacctggcctagtattaaatctttataacaacataattacaagcttgagacttctattaccctgttttacagatgag<br>taactggggcacagtaaggttgagtaatttggccaaggttatacagctagtaattacatgataccaaaactgatagcttctgccagtgctctt<font color="green"><u>AATATAA<br></u></font><font color="red">GGTTGAAAGAGGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTG<br>GCTAACACGATGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCTTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGG<br>AGAATGACGTGAACCCGGGAGGCAGGGCTTGCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCTTGTCTCAGAAAAAA<br>AAAAAA</font><font color="green"><u>AATAATAA</u></font>ataataataataagaaggttgaaggaaaaaagaaaagagccaattaacataaaacatagctgttagaagcctccttctacaaatgg<br>ccatgaagtctaagtcgataattatatctgctttcttttttttttttttccttttttgagacagagtcttgctctgtcgctcaggctggggtgcagtggc<br>gtgatctcggctcactgcaacctccacctcccaggtttgagcgattctgctgcctcagcctccagagtaactgggactataagcatgcaccaccatgcct<br>ggctaatttttgtatttttagtagagacagggtttcaccatgttagtcaggctggtctcgaactcctaacctcaggtgatccactcgcctcaccctccca<br>aagtgct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	1177188	1177189	1001164	0	-	pAlu17-1180422; RIP_Alu_chr17_001_01	NA	NA	SINE	Alu	Y	cactgtgtgtcaaccatgcagcctttctggagaggaactgggcagaataagctggacatgggcgtgtctttgggcggtgccttcacttctagggatgcag<br>gttaagctggacatgggcgtgtctttgggcggtggcttcacttctagggatgcaggtattcgctggacagatgtttgttaagctccctggtgccaggccc<br>agggagttggtcgtgggtgagaccccagagaccccagagcacattcagcagggacaaggcaattgtcatgcaattatctatgcaggaacagggtgagaag<br>c<font color="green"><u>ACCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTCCAGAAAGAAAAAACAAAAACAGCCACTAATGTCATTCATGAAGGCTCTGCCTGCC<br></u></font><font color="red">TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGAGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCTGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGTCGTGATGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGA<br>CGGAGCTTGCAGTGAGCAGAGATCGTACCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTCCAGAAAGAAAAAACAAAAA</font><font color="green"><u>CAGCCACTAAT<br>GTCATTCATGAAGGCTCTGCCTGCC</u></font>catatgaatttttttttttttgagacggagtcttgctctgttgcccaggctggagtgcagtggtacgatctctgc<br>tcactgcaagctccgtctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggtgcccatcacgacgcccggctaattttt<br>tgtatttttagtagagacagggtttcaccgtgttagccaggatggtcttgatctcctgacctcgtgatccgccctcctcggcctcccaaagtgctgggat<br>tacaggcgtgagccaccgcgcccagc	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	10144160	10144496	1001165	0	+	pAlu17-10146390; RIP_Alu_chr17_010_01	NA	NA	SINE	Alu	Yb7	ttatttcacttagcataatgtcccccaagttcacctatgttgtcacaaattgcaggatttccttcttttttatggcccaatagtattcccaatagtatat<br>gaatatatatattcaaatttgcatatatatgtacatttgcatatatatgcacattgtggtgatatatacatatatacgagatatatacatatatatacgt<br>atatatggatatatacgtgtatatatatacatatatacgagatatatacgtgtatatatatatacatatatatgtatatacacattttctttatccattt<br>atccattgatggacatttagtttgtttccacattgtggctattgtgaagagtgatgcaataaacatggaagtgtagatatctcttc<font color="green"><u>AAGATCCTGATTCA<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTCCTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATCCTGATTCA</u></font>atttcctttggatatatgcccagtagtgggatggctggatcatatggta<br>gttccatttttaagtttttgaaaaactgctattaggttgtaccaatttgcattcccaccagcagtgcacaagagttcccttttctccacgtcctcaccaa<br>cacttttgtctttctgataatagctattctgagagatgtagagtgatatagggtctttatttttaaatgtttgtggaagctagtgatttacctggccatg<br>ggttggatttccatgttttctacttggagcaaagatcctccactttcacattccttattttatatttacgatagagcagcaagaatctaaatatcagctt<br>catagaagaggaatggaccatgataataaacacagca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	downstream:MYH13:NM:003802	
0	chr17	18900614	18900909	1001166	0	-	pAlu17-18902845; RIP_Alu_chr17_018_01	NA	NA	SINE	Alu	Ya1	agaaaccccatctctactaaaaatacaaaattagccaggcatggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttga<br>acccgggaggtggaggttgcggtgagctgagatcatgccattacactccagcctgagcaagaagagtgaaactccgtctcaaaaaataaaaatatatatt<br>tgtggttaggcatggtgactcaggcttacacctgtaatcctagaactttgggaggccgaggtaggaggattgcttgaggccaggagttcaagactagcct<br>gggcaacatagcaagatcccatctctacagaaaagtaaatttttaaaaattatgacattttgagctgcatgatgaaaaaaattt<font color="green"><u>AAAAAGAAAGAAAGAA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGTCGAGGTGGGCGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACGCG<br>GTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGCATGCTGGTGGGTGCCTGCAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCATTCTCCATTCTCGGAGCTTGCAGTGAGCCGAGATTGTGCCATTGTACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCACAAAAAAAAA</font><font color="green"><u>AAAA<br>AGAAAGAAAGAA</u></font>agaaagaaagaaagaaagaaaattggccacgtgtgttagtgcacacctgtagtcccaactagacaggatgctgaggcgggaggatctc<br>ctgagcccaggagttcaaggctgcagtgagctgtgatcgtgccactgctctccagcctaagatacgggaaaaaccaaagcgtttttcttttctttttttt<br>ctgctgtcattgtatgaaatagtccataggtttccattatatccagttatagagggtgttactgagttacggattttctgcctgctggatctgtccgttt<br>ctgatagagggacattgaagtcgccaactataatagtttctccttgcggtgctgtcgctttttccctcacatattttgatgttctcttgttaggat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	15573202	15573501	1001167	0	+	pAlu17-15575433; RIP_Alu_chr17_015_03	NA	NA	SINE	Alu	Y	gcatatcagttacctcagatacttatcttttttttttgtggtgagaacatttaaaatctgctgtctcaaaaatttcaagtattaccacattgttattaac<br>tgtagtcaacatgttgtacaatagagctcttgagcttttcctcctagctgacatttttagtgacatgcgttgcatttgaacatatgcagttaccatgacc<br>aagctattttatttgtagggctgtacttaactaaaatatctatacatgtgtaccaaaagaaattaacaagaatgttcatagtggctttattgctagtagt<br>cccaaaatggaaacaaaccaatgtccatcaacagtagaattgatagatgtgccatattcatgcagagcaccaccgagcagggaaaaga<font color="green"><u>AATGAACTGCTT<br></u></font><font color="red">GGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGATGGATCACTAGGTCAGGAGATTGAGACCATCCTGGCTAACACA<br>GTGAAACCTCATCTCTGCTACAAATACAAAAAAATTACCTGGGCATGGTGGCAAGCGCCTGTAAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>TGTGAACCTGGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCATCACTGCACTCCAGCCTGGCCGACAGAGCGAAACTCCATCTCAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AATGAACTGCTT</u></font>catgaaaccacttgaaggagtgtcacaaatgtaatgctgggccaaagaagccacacacaaaaccattcctactgaatggccctccatg<br>cttccatttatgaaacagacaacactaattggggctgctaaaaaccaggtgactctttgctttgacaagacaggtgggcagtggttagggagcagacctt<br>caggagagggatttccagattgttatttttatttcattttcttggactgtgtggtagctccaagcatgtgtcctctttgtgataaatcactgagtagtag<br>aataataggattcctgtgtatattatactttaataaacatatttgaattcctttttccattaggacaaataatataaatcataataaatctttgcaattt<br>	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	27362135	27362427	1001168	0	-	pAlu17-30187803; RIP_Alu_chr17_027_02	NA	NA	SINE	Alu	Sg	gtgaaaccccatctctactaaaaatccaaaattagctgggcgtggtggtgggtgcctgtaatcccagctactcgggaggctgaggcacgagaatcatttc<br>aacccaggaggtggaggctgcagtgagccaagatcgtgccactgcactccattctgggcaacggagctagattctgtcttaaaaaaagaaaaatgcataa<br>aggagcacaatggtttagcctggaatcccagcactttgggaggccaaggcaggaagattgcttgagccctaaagttcaagaccagcctgggcaatatagt<br>gagacctcatctctatttgaaaagaaagaaagaaaaatcaaagaaaatgaggtatatatgcacgataggatattattcagccattaaa<font color="green"><u>AAAGTGAAATCC<br></u></font><font color="red">GGGCCGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACGAGGTCAGGGGTTCGAGAACTGACTGGCTAACATA<br>GTGAAACCCCGTCTCTTCTAAAAATACAAAAATCAGCGGGGCGTGGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTT<br>GAACCCAGGAGGTGGAGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTAGGTGACAGAGCAAGACTCCATCTCAAAAAAAAAAAA</font><font color="green"><u>AAAGTGA<br>AATCC</u></font>ttcatctataaagctagaggtttggaaaataaaacctatttgcagcaacatggatagaactggaggacattatgttaagtgaaataggccaagga<br>cagaaagacaagtatcgcatattctcattcatatgtgagagattaagaagttgatttcatggagataggcagtagaatgatggttactgggggctgggaa<br>gcaggtagggatgaagacaagttgattgatgggcataaaagcacagtcagatagaaggaataagttttagtttttgtttgcacagtagggtaactagagt<br>caacaataacttagtgtatattttaaaatagctagaacatttgttatcttcccaatacaaaaaaaaggataaacatctgagatgatggatacc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	60094399	60094709	1001169	0	-	pAlu17-63081380; RIP_Alu_chr17_060_01	NA	NA	SINE	Alu	Sg1	tcggatcactgcaaccttgacctctgtggactcaggtgatccttctatctcagctttccgagtagctgggtctataggtgcatgccaccactcctggcta<br>attttttgtagatagggggttttgccatgttgctcaggctggtttcaaactcctgggctcaagtgattcctctgcctcggcctcccaaagtgctaggatt<br>acaggcatgagtcaccatgcccagcccttgaatggttttaaagtgttattcttatctgaatatttgttttaaacaacaggatttaaactcacaggaaagc<br>ctaaatataaacctctgcacgttaaccctatatacatttttctatgctgtcacttacatatttgaatgtactgctttaaacttccaaac<font color="green"><u>AAGCAGCCTCT<br></u></font><font color="red">GGCTGGGCGCAGTGACTCACTCCTGTAATCCTAGCACTTTGGGAGGCCAAGGCGGATGGATCACAAGGTCTGGAGTTCAAGACCAGCCTGGCCGAGATGG<br>TGAAACCTGATCTCTACTAAAAATACAAAAATTATTTGGGCACGGTGGTGGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGGAATTGCTTGA<br>ACCCGGAAGGTGGAGCTTACAGTGAGCCAAGATTTCGCCACTGCGCTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTGAAAAAAAAAAAAAGAGAGAGG<br>AAAAAAAAAAG</font><font color="green"><u>AAGCAGC</u></font>tcccccaggtctcccatcacgttctgaaatcctaacttctattacctaatacaaggctacaaattatgttagtcgggtggtt<br>gggaacaaagcgtgtgccataaaaataaggtaaatgtgaatgtgtacatcagtttgctaagttttttgccactgtctggcctcttaaattgtggtagcag<br>ctattgttcacattgatatattacattgatattgatattgttcacgtcatatatatttgtagtacaaggaagcatttctaaaggaccttgttcattgctt<br>tgcacaaaatagccacttaatatttgttgaatgaattgctggcactatctctggtgttttaatttttatttatttatgtatttatttttgatatggagtc<br>tcactct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	63718957	63719255	1001170	0	+	pAlu17-66671776; RIP_Alu_chr17_063_02	NA	NA	SINE	Alu	Yi6	gcctgtggtcctagttacttgtgagactgaggtaggaggatcacctgagcccaaggaggttgaggctgcactgagctgtgtttacaccattgcactccag<br>cctgaaagacagagtgagaccctgtctcaaaaaaaaagggggggggggaggtggttagagtgtaaattttatgttatgcatactttaccacaattttcaa<br>aaattatttgaaagaagccacacacaaaaatcttgtttagtgaaatcacgtattgtatgatttcgtttatatggaatgtcccaaatgggcaaattcacag<br>gaagtaagtaaatacttgccaggaaatgggaggggaaatggttgagtagggccagtgattctggggcttctttctggggtgatg<font color="green"><u>AAAATGTTCTGGAATT<br></u></font><font color="red">GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCGCTTTGGGAGGCCGATGCGGTAGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTTTCTACTAAAAATGCAAAAAAATTAGCTGGGCGTGGTGGCGGGCATCTGTAGTCCCAGCAACTCGGGAGGCTGAGGCAGGAGAATGGTG<br>TGAACCTGGGAGGTGGAGATTGCAGTGAGCCAAGATTACACCACTGCACTCCAGCCTGGGCAACAAAGCAAGATTCCGTCTTAAAAAAAAAAAAAAGAA</font><font color="green"><u>A<br>AAATGTTTTGGAATT</u></font>aaatagtggtgatggttttacaaccttgtgaatactatactaaaacccactaaattgtgcacttatttaaaagggtgaatttatg<br>gtgtataaattaattatatctcaataaaaataaaaagtggtatgaagaattgggaaaacatatgtatatgtatatatatgtatatatgtatatgtatata<br>tatgtatatgtatatatgtgtatatgtatatatgtatatgtatatatgtgtatatgtatatatgtatatgtatatatgtgtatatgtatatatgtatgtg<br>tatgtatatgtatatatgtacatgtatatatatgtatatgtatatatgtgtgtgtatgtatatatatatgccttgagtcttttttaatcagttcccttt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	40921807	40922113	1001171	0	+	pAlu17-43576949; RIP_Alu_chr17_040_02	NA	NA	SINE	Alu	Sp	gaggattctaacaaggaccaaactctgaatgaatgaaaacaggaccgttgcctgacccattcaccattgtatttctagtacctggaacagtgtttgtcac<br>acactggtgctcaaaaaataagctgttgaatgaattgattaataaaataaaaacaaggcacggggtaagtacctccacttcacacactgtgggaagttgg<br>ggtatacaactcttaagtgctggggcaactgtggagctcctgtcattaagccaagctgccaataaggctgaaaacaacttaaatatactgcatattaatg<br>ggaggacattgaaggtaaacagcattcacttttcaaaggaatacgactataagtggcaagcagagacagtgttctttggggctctttaaaa<font color="green"><u>CTGCAATCA<br></u></font><font color="red">GCCAGGTGCGGCGGCTCACGCCCGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGGTCGGGAGTTGGAGACCAGCCTGATCAACACA<br>GAGAAACCCCCATCTCTACTAAAAATACAAAACTAGCCGGGCATGGTGGTGTATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTT<br>GAACCTGGGAGGCAGAGGTTGCGGTGAGCCGAGATCATGCCACTGCACTCCAGGCTGGGGAACAAGAGTAAACTCCGTCGAAAAAAAGAAAGAAAGAAAG<br>AAAAAAG</font><font color="green"><u>CTGCAATCA</u></font>aatggcccacccatctgatgccgggtcctcaggattcagagaaaatgtgtaccaaaaagcccccaggaaactataaatgctgag<br>catgggacttgggtgcctctggaatgtccttctgcctcagctactctgagataacatggttccctgtgttcatggaacccagatggccaaaagtcaatga<br>tccagcacttaaaagaaaagaaagcgattcaagagcctctgtacccacctaggcctcagcctccccaggacctactcacctatactcttcacaacaggta<br>acgttgcctctggcacccatcatatcccctgaattcagcatcaggactgatctgccatcagctctggcagggagaggcccttacaagtgccaagaaaagg<br>aacacga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PLEKHM1:NM:014798:1/12	
0	chr17	41005380	41005683	1001172	0	-	pAlu17-43660519; RIP_Alu_chr17_041_01	NA	NA	SINE	Alu	Sx	ttgagtttggaccatagagaagtcattcttgtgtggacctcagtttactcacctgtacagtataggatggactagatgatctaatggtcaggggattggc<br>aaacttgttcttagggcaccaattagtaaatattttaggttttgcaggccacctggctatgtcacagctgctcagctcggcccttgtaggatgaaagcag<br>ccatagacaataagtaaacaaatgagtgtggctgtgttccagtaaaactttatttccaaaaacaggctgtggccggccatagtttgttcaccccattttt<br>gagctcttgacattctttagtctgtgatttcgataattagtttaggaaaaaagctttgactttcataaataatgcttctggaaatctagt<font color="green"><u>AAAACCTTTA<br></u></font><font color="red">AATTTTGGCCAGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATTGCCTGAGCTCGAGAGTTCGAGACCAGCCTGGC<br>CAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTAGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG<br>AATCGCTTAAACTCAGGAGGCGGAGGTTGCAGTGAGCCGATATCGTGCCACTGCACTTCAGCCTGGGTGACAGAGTGAGACTTCATCTCAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAACCTTTA</u></font>cattttatttttgctttttccctttatcaggaaagtaatgtagaaaatttagaaaacccagaacattaatattttggttcctctca<br>ttagttaaccatctttgggtggacatgtgtacatacatacatacctttttttttttcttttgagcaaaaaagtacatactttttctttttttctcttctg<br>ccacccaggctggagtgcagtggcgcgatctcggctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagcctcctgagtagctggga<br>ctacaggtgctcgctgccacacccagctaattttttgtattttttaatagagatggagtttcaccgtgttgcccaggctggtgtcgaactcctgagctca<br>ggtg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	63425567	63425876	1001173	0	+	pAlu17-66412496; RIP_Alu_chr17_063_03	NA	NA	SINE	Alu	Sq	agacaagaccagataaacactagtaaattcatgcccttggggccctgtttatagatgtcctcagatccccttctttcacgtgctctttctttaagtcaag<br>tggaataaaattcactaggcttaagatttctcagttacaaccacatctctaacataccttcttaccattacattcaaatcacccagaacctattgggggt<br>gttcccgaaactcttctgttgcaggaatgttgtgaatgccctgaaacccacaccctgaaatgtagaggcagggagcaggctggatggctcccaggggctc<br>ccagaggctcctggggtggcaccagctggaagaacctgccagagtccagtcctgggtcttgggcagtgtctggcttgagccttagaaat<font color="green"><u>CACACTAATGG<br></u></font><font color="red">GCCAGGCGCGGTGGCTCACGCCTGTAATCTCAGCCCTTTGGGAGGCTGAGGTGGGCGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATG<br>GTGAAACCCTGTCTCTACTAAAAATACAAAAATAGCCAGGCATGGTGGCAGGTGCCTGTAATCCCAGCTACTTGGTAGGCTGAGGCAGGAGAATCGCTTG<br>AACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCACCATCGCACTCCAGCCTAGGGGACAAGAGCGAGACTTCGTCTCAAAAAAGAAGAAGAAGAAA<br>AAAAAGAAAC</font><font color="green"><u>CACACTAATGG</u></font>tggaaggtacaaagagttcaaagagactgatctatgtagccagaatgccagtttattaatttacaatgagaaatcaaat<br>cagaaatgcaaactcatgtcagcctgggtagcattctctttctataaacaagccacagaggaagccaagttatcctcagggtgcttggtaatataaacca<br>gagcctggggagtttgtcacctgattggaatgtttaacagtattggtttctgacagcctaagtgtttgtctctgcaataggtgtgtatacctgtcaggag<br>gaagaacccaagagaccaactggcattcccttccttgataatttctggtattttgagtgtgtgtttctgcttagcagatatttattgagcatctactctg<br>tgttgtataa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	14364634	14364940	1001174	0	-	pAlu18-14364531; RIP_Alu_chr18_014_01	NA	NA	SINE	Alu	Ya5	tgaattactgtttcaggtgttcatctgctacaacaaacatttatcaaacacctagtaggtataagagatcatttaaacccaccccaaaggatacaaagtt<br>gaggaaagcactctttgcctttgcagaaatcacaatctattatcaaagcatatgatagaaatttcaatatctaaaacacaaaatctaaagtgttaagtgc<br>catgagaatgatataagagtttaagaagggagagatacaacaaagtttgggcaagccagtatgtttcttgaaggaatagcacttaatttgtgatgtgaag<br>ataaaatctcagtaaagaaaaatggggaagaagatggtaagcctggcagaaggaatattattagcaagtgcaggaaaatgtactctaatc<font color="green"><u>AAAAAGAGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATCCAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCCTGGGCGACAGAGCGAGACTCCGTCCCAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAGAGCA</u></font>agtagcctaatgtgactggatttcaatttacctttacatttttctatcatgttatttcatgcccataaattatggcaatagtc<br>taaatgaacttgaatatcagaccaaattgccttgtcttatgtagtaacccactcaagtttctaagcagaaaataacctgacccccattctctgagatttg<br>agaaaaaaattgtgtatccttcactaaagtttggaatgcattttggaaggaaagaggaaagcagaatgaatatgtcctgaccacgtgtattactcatttg<br>ctctgaaagccataccctgcccctttttctgctcagctctgaatgttagtctcacaattaggtttagctaagtgaaggcagaggagcaggcatccaaagg<br>gtggaag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	24617757	24618064	1001175	0	+	pAlu18-26251650; RIP_Alu_chr18_024_03	NA	NA	SINE	Alu	Ya5	tggttcctgcttttaaaatagagggctaattttagatcataaaagtacacccctgaaaacaagatatgattttttaaatgtggcagaaatatagatataa<br>aactttgatgttcagtattttagactttcaaggatctcaacatttgggcaaaagatgcagaggtataaattttaaaaaatttttactttcccaaatagtt<br>cttaaatgtctgcttgagatgaagcatatttcagggtgtacattcagtagcttattgaaccttttaaaatttaggcatattgagtttttacaaaatttct<br>cagtatattaggaaatactcctctaaaggttgggaaagtagtttttagaagtagatgcaatgacgggagaagttaacagtccttcaa<font color="green"><u>AAGAAAAGGCATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAGAAAA<br>AAAAAAAA</font><font color="green"><u>AAGAAAAGGCATT</u></font>taaaactgaaagataaacatagaaaagtactatgaagacagattttctgtcaggtgcagtggctcacacctgtaatccc<br>agcactttgggaggctgaggcgggtggatcacctcagatcaggagctcgagaccaacctgaccaacatagcaaaactccatctctactaaaaatacaaaa<br>ttagctgagcgtagtggtgcatgaccataatctcagctactcaggaggctgcggcaggagaatcaattaaacccaggaggtggaggtttcagtgagctga<br>gatcgcaccactgcattccagcctgggtaacaagagcaaaacacagtctcaaaaaaagacagattttctttctttttaaatactatatattattccattt<br>tgtatgta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	30000718	30001040	1001176	0	+	pAlu18-31634611; RIP_Alu_chr18_030_01	NA	NA	SINE	Alu	Yb7	atgccactttaaacaatggatcttgtatctggaactgaagtaagtaaacagactttgtctagaagagggaaaaggagaactgaaaggtatttgtttttta<br>cagaaagtagataatgtgaaaatttgtctatctccattttcccaaagtcccattatcaaagatctatcatttgaactggagccaatggtaaatgtccata<br>aatgcaatcatgtcactaacacaatagaaaaatattaactaaagctcataaatttataacaatcatgctgtaactttaacaaatatggaataatttacat<br>acagttgaccttttgggtctgcaagttctgcatctgccaattcaaccaaccatggatgaataatatttgggaaaaaataaaaatat<font color="green"><u>AATAGTAAAAAAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATAGTAAAAAAAA</u></font>atatatagtataacaactatttacaaagtctttatatcatattaggtattataagtaacctag<br>ggatgatttaaagtatacaaagggatgtgcataggttatatgcaaatactagaccattttctatcagggaattgagcatcacaggaagttcctggaccca<br>atccctaatggataccaagggaataccgtataacgttcagttcacctttaaaataagtcatctttgatttcttacacctcctacatatccagttactaag<br>tgttaattgttaaacacttctctaatctgtcgatacttgcttgtatctctggcttggattacttattcaatttactacttcttctacctgtttcatattt<br>tggccccttcattcttctcttag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NOL4:NM:003787:1/11	
0	chr18	30915971	30916272	1001177	0	+	pAlu18-32549864; RIP_Alu_chr18_030_02	NA	NA	SINE	Alu	Ya4	ggactggggagagtggccataagtatggagttctcacctgcaagtcttggggagagggtgaaatggctgaaatctggggaagaatcctggagcttctagt<br>ctctagtgccagggatagtgacctcagcctcaaaatgagcaacttgagaaaggggcgcattgtgtagacgtggaccgtgggtttgcgctggtccactcat<br>accagtatattttaccttatactaaaagcctctctgtgggctgccatacatagagttcatgtagtggcctggcctgtataactgttgatagtatgatgtg<br>ggtaatggttcagtagaaattctctgagaaaatggggaaagggatcagctttaggtttcttacttgcaatttaatttgacctaaa<font color="green"><u>AATACATACGTTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AATACATACGTTCTG</u></font>aaaattagaacttaaaaatggcattctctaaagacgtttgtgcccagaaatcagcattggtttgcctaccaaattagttaagc<br>ttcttcttttcctggcatttaaagccttgagcaatctagctgcattccacctttccaacatttatccccacagcctccctacccataacctgtatttcct<br>caaacgcacgtttcacttatatgccctgattccttgtctttgcttggagtatctcctttgaaattcatatcaaatgccactttgccctattcttcctgat<br>cacattcaacaaaatgtgagctctctctctcttttcaatgatcagacctttacaaagccttacgctcattgagtacttgttttaagtcttcagcattcgg<br>ag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MAPRE2:NM:001143826:3/8	
0	chr18	35315645	35315961	1001178	0	+	pAlu18-36949538; RIP_Alu_chr18_035_01	NA	NA	SINE	Alu	Yb7	catataatataaactggatagataatgtagttttttttttcttaacttcctggattattaatttaaatgtgtcattttgagcagattgcgagctactaca<br>ataaagtttgagagcaaggctgagtaatcatattgcacaggggtctaatggtaaacagggacattgagaaggaacatggaggagcaggggccaggtttta<br>atggagccacttcctcagcgtgtgctactcgacctagtttctgcttcatacagtccagcttatgcaactaggtaaaaagcaggctgtggatgaaaaccag<br>ataatgtttctcggttgagatttccacagcaaataaattatgaaattaaaaaagataaatgctcacatatggattgtgcaactcata<font color="green"><u>AAGAATCAGATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATCAGATTC</u></font>atagactgttaggtttttatgcacaactatttacattcaattattcagtcaatgccatggagacagggtt<br>acaagattgaaagatgaatattttctgttacccgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaacataacaagaaact<br>gctacctggatatcaagaagcaatcatcttgcagttaatatgaaagataaaaacaaaacaaaacatatcttcatcacagctatccaagcagaacatcaat<br>gactaaacaaatggcaagcccaaattaaatcaaaaggcaataacaagaaaaagagtgtgggagccatagatcattgcacagggaggtcagtgagctctca<br>aagcctgaggagatgac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LOC647946:NR:024391:3/4	
0	chr18	45273867	45274171	1001179	0	+	pAlu18-46907760; RIP_Alu_chr18_045_01	NA	NA	SINE	Alu	Ya4b	atttcatggcaccacccttctaggcagctcaaactctaggagagtagactccaggctaggctcacttgcttccttgacctcagtgtaggagacctcagcc<br>ctaagtctctcccctcgactccacttccattgctgatgctggattccatggtgtttcctcggtaattccctcccctcacatgagctttcaactgcatgct<br>aactcccagattaataccccagcgccacatctgtctcctgagctagaccctgatagcaaactactccctggacatcctttctgggaggtccctgaagacc<br>tgaggttatttgaaacctaacatgcccttaaacagaactctttgtcttctcctccgggttcctcttttatgttgcatggtgac<font color="green"><u>AAGAGTAACAGACAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAGTAACAGACAATG</u></font>attctataagcttactagattctaggcagtattttcagtgtttttacatgcatttcctcaagtaatccttaggacaac<br>tatttgtaaatgatgaagttgatctggctgctacaatgtgaagaagaaaaaaaaggaactccccggcaaatccaaggtccggcagctgggagtggcagcc<br>ctgggatccaaggcagccttctgtaaccaagctctgcatccctaggcgaccctgcctttctcccttccttgtttggcgacttccccatacacctaggatc<br>ttaaaccagaaagatgagagactcccctcttcttgtctttgcacatacaattatttaacaaaatctggattattcttttaagtggtcttcttgccctaat<br>tattt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	60536761	60537061	1001180	0	-	pAlu18-62170652; RIP_Alu_chr18_060_01	NA	NA	SINE	Alu	Ya5	aagttaaatagccaaaaatgtgtctcaaagattaatgctcttgaaatgtaatgcagaaaaatttggacaataatggaggaaaaccttctttataaaacag<br>gctaaacttaaaacaaaatcagtctcacaaagttagcactaagcattaaaatcactgaggaaaacctttttgctttttttcttctccttagacagtgtca<br>gcagtcgcaaatcaggttagggtttagatcactgtgtgttctaaattatatttatgcccttgtaaagctgtgcaacatgttgccttgcgtaagaaatctt<br>taaaccacatgttctggcaagtaactgctgatatttacttccaaaattcgatctggttgctttagatacttcagcaatgacctttaa<font color="green"><u>AATAATCAATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AATAATCAATTTT</u></font>aagactatctttcagatgcattcttgtattgtaagtcatcactggcttataccttattatgataatttcaaaacaattaccttatt<br>tcttccaatgtcttttgatacctaagatttctagacttaattttagaacataaatcttcataaagtacaatatattctattaaaaaaaaattccccatca<br>ttggaaccagcataccaaagttgcatcaagatataaagttgaatgatgtaggtaattataaagattattttcatctgaagtatccacataattgaagcaa<br>atgtgatttctgcatgtgggaattatctcaattttccacttcagttggttagtgtaaaaataaagaattttaactttttacatcctcaagcaattaatac<br>t	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	61684234	61684562	1001181	0	+	pAlu18-63318127; RIP_Alu_chr18_061_01	NA	NA	SINE	Alu	Ya5	accattttagctcagaaatgtggtctctttgtgtcttatttcccaagtttttaaaagcagataatcaggaatttttatactgttttagttttgtcgccac<br>tattatagactctggattttcacacagtaagtgctgaagccaatgagattaagtattcacagggggtgcatgtggggcccacagcctggcatgaaaattg<br>atttctagtacacaaataattcattctttatgacacctcagaaagtggtgtgaatctcgtttctaggcattaggtatcaggatttgtaactcaaaccttt<br>taagacttctgaacaaatattactggcaaaaagcaaggtgaggaggtggagatggggaataagaacttgaaaatcaagttcaatt<font color="green"><u>AAGAATGAAACTATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAACAA<br>AAAAAAAAAAAAACAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGAAACTATAG</u></font>gaagtacctggactttagactcttaaaaaaaaaaaaaggtacttgactacatgtt<br>aagtttgtgttccagtgatgtgactaattaaagctacatgtaacatgacggatggggatgcactgacattaccagaagtttaatgctggaaggcatccca<br>cgtatcaatgctaacccaaaccttacagagggaaaacttgaggtgtagggtaagttcgagggtttgtaggagtacatataacaagttagaggatatgacg<br>gggtaagattctaggtctccttattctcaatcactgatttttatttaaactgcacaagaagtacatcgtgaaaatataaatatgtttacgcctatatatt<br>gctgaaataattcatgttatccgaagttgt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CDH7:NM:033646:11/12	
0	chr18	69424394	69424697	1001182	0	-	pAlu18-71058285; RIP_Alu_chr18_069_01	NA	NA	SINE	Alu	Yc1	aaaatttagaaggcagtgtagagtattcttatatgtcccccacacagatgcccctgttgttacatcttacatctttacagtatcttcattacaagtaatc<br>gatcaatattgatgcattagtataactgaagttcaaagttgagttcctcagttttacctggtgtcttttttctgttccaggattccatccaggataacac<br>attatatttaggcatcctctctccttagtcttttcttggttgtgagggtttcccagattttctttgcttttgatgaccttgacagtttagaggaatatca<br>ggtatattgtaggaagcccttctactagaattaatctgacatttatctcatgattagattgagattgtatattttttgggata<font color="green"><u>AAGATTATAATGTGTCA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGATTATAATGTGTCA</u></font>ttttcgtcacatccaatcaaagataggcactaccattgtgatttttgactgttggtgctgaccttgaacactgctggga<br>tggtgttgtcaagtttctccacaggttctccacaagttactcttttgttgccctttcagtcgctatgagcaacacccacttaaggagcaatgacttatgt<br>tctccttctttatggggaagtatctctctgaattatttggaattcttctgcatgattgatttgtctcttctcccttatgtttttcagtcaacagtgcgtg<br>ctatggatatttattttgtattttgtgttatgtttcaatactattttattctaaacacatatttttggttgtcatttaaaagtttatttttacacaattg<br>cact	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	21146493	21146802	1001183	0	+	pAlu18-22780386; RIP_Alu_chr18_021_01	NA	NA	SINE	Alu	Yb7	ttacagagaaatgtttcttatattaccctttcaagatccaaactttttaattttaataagttaattaatgtaatagatcatcacttatactgggaaaaca<br>tattcatcagtacagacagtcctttcataaatcccaattacaatacccacaagcattcaaagagctttgagaaaataacagatctaaaaataattatttt<br>atatccatgttttgatagcgaattttacaaatatatcaagaagagaatggcagaccaggtactaatattcaaaaacttctgctgcagcaaaatcaatgtg<br>gaaataacaaagcttgtatactaggtaatgattgaactgaccttacctccaaaaccggaaaaggaagcatactcagcctatggttc<font color="green"><u>AGAAGTTGGAACCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AGAAGTTGGAACCA</u></font>actatagatgatcactttgtctttggtaactgcatggaagaacttggtgggagccctgacagttgaacaaagtgac<br>acactcagccccaccactttctctaaaactgagaggagcaaagatttggtgagccgtttttcacctcatgaaataagtgatagtcaagaacagtggtctc<br>tgaaatacagggtacattatcgtgcaggagagaggatactctgaatagtcagaaaccaatcagaacggacaccaatcagaaatagccatccaggtactaa<br>ccagaccttcctgagagcaaggagataaacagtactccagtcagctgggtgggctggcttctccagccccttttatcccatctcatactaatgcagtcta<br>cagtgtccag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ZNF521:NM:015461:3/8	
0	chr18	55819850	55820148	1001184	0	-	pAlu18-57453741; RIP_Alu_chr18_055_02	NA	NA	SINE	Alu	Y	gagactgagggccaatattcaacacttaaagaaaagaattttcaacccagaattgcatatccagccaaactaagcttcataagcaaaggagaaataaaat<br>tctttccagacaagcaaatgtggaggaattttgttaccacaaggcctgcctttcaagagctcctgaaagaagcactgaatagggaaaggaaaaaccagta<br>tcagccactgcaaaaacacagcaaaatataaagaccaatgacactatgaagaaactgcatcaactagtgtgcaaaataaccagcagcatcgtgatgacag<br>gaccaaattcacacataacaatactaaccttaaatgtaaatgggctaaatgccccaattaaaagacacagactggcaaattggatt<font color="green"><u>AAGAGTCAAGACCC<br></u></font><font color="red">GGCCGGGCATGATGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCTAGATGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCATGGTGGTGGCCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGTGGAGCTTGCAGTGAGCCAAGATGGTGCCACTGCACTCCAGCCTGGGTAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAGTCAAGACCC</u></font>atcaatgtgctgtattcaggagacccatctcacatgcaaagacacacataggctcaaaataaagggatggaggacaatttaccaagc<br>aaatggaaagcaaaaaaaaagtaggggttgcaatcctagtctctgacaagacagactttacaccaacaaagaccaaaaaagacaaagaagggcattacat<br>aatggtaaagggaacaattaaacaagaagagctaactattctaaatatatctgcacccaacacgggagcacccagattcataaaacaagttcttagagac<br>ctacaaagagacttagactcccacacaatagtgggaaactttaacacctgactgtcaatattagacacatcatccagacaggaaattaacaatgatatt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	74098285	74098604	1001185	0	+	pAlu18-75732179; RIP_Alu_chr18_074_01	NA	NA	SINE	Alu	Yc2	ctgtcaattcagatcgcagtcaacccattcaaaatacatgcaataagcaagttctcagttgaaattgacaatttctagtgcctattttgctaaattgtga<br>tcttcgttccagagcataacagttatctgttatggagtgtggcggtctcattaatttatgcttagaactgctcctgacagtggattgtctttggcttcca<br>agaacctttcattgactgttttaagctttaaacaaaaatactaccaaggtaatgtgtgtcatctactctgtactctccattgaccctgtttcttatactt<br>tctagagggaatgaaccaaagcatatttacaaaagggtctctatcaaggccggggtggggggggacaagagagaaagaatagcttaga<font color="green"><u>AATTAAGTCCCT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAAATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATTAAGTCCCT</u></font>tcaaattaatttgtgcagacactttggctttggatcagattatcaaagtgtttagcacttacggctca<br>gcttccaaaatgtgcatgcccaatttaattaggggtaattttcattcattacgcactaaaggctggttaggctggtggtggctcaaaactctattctaac<br>agtgatattatatgaaaagcccataatgtcacaatgagttcactcaaagaagagctgccacctaggtaagtgaggagacagtagcagcccctccctggcc<br>gacccatccctgggctgaagaatgtaaaccatcgggattggatctgacatagcaagtcaaggcctctgcgtccccagcatccctggcgtgcgcgtctctg<br>tcgattagagaccaaatctg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	53496938	53497152	1001186	0	+	pAlu18-55130833; RIP_Alu_chr18_053_03	NA	NA	SINE	Alu	Ya3	cagggcacggtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatcacaaggtcaggagtttgagaccggcctggccaacatagtg<br>aaaccccgtctctactaaaaatgtaaaaaattagccacgtgtggtggtatgcacctgtaatcccagctacttgggaggctgaggcaggagaatcgcataa<br>acccgggaggcagaggttgcagtgaaccgagatcacaccattgcactccagcccaggcgatagttcgagattctatctcaaaaaaaaaaaaa<font color="green"><u>GAAGAGAA<br>AAGAAAAGAGTGTGGTGTTGATGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAATTGACCCGACTTCGATTCCCAGCCAATGCAGCAGGCTGACCTTT<br></u></font><font color="red">TGTCCTGGCTAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAAAATTAGCCAGGCATGGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGC<br>TGAGGCAGGAGAATCGCATAAACCCGGGAGGCAGAGGTTGCAGTGAACCGAGATCACACCATTGCACTCCAGCCCAGGCGATAGTTCGAGATTCTATCTC<br>AAAAAAAAAAAAAAA</font><font color="green"><u>GAAGAGAAAAGAAAAGAGTGTGGTGTTGATGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAATTGACCCGACTTCAATTCCCA<br>GCCAACGCAGCAGGCTGACCTTT</u></font>cgtcctggctaacatggtgaaaccctgtctctactaaaaatacaaaaaaaattagccaggcatggtggcgggtgcct<br>gtagtcccagctacttgggaggctgaggcaggagaatgcatgaacccgggaggcagagcttgcagtgagccgagatcgcgccactgctctccagcctggg<br>caacagagcaagactctgtctcaaaaaaaaaaaagaataaaaaagaaaagaaaaactaactattaagttctgtgttcactacctggatgatgggatcaat<br>tgtaccccaaacttc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ATP8B1:NM:005603:14/27	
0	chr19	8420426	8420718	1001187	0	-	pAlu19-8409311; RIP_Alu_chr19_008_01	NA	NA	SINE	Alu	Ya5	tctcctgagggacaaggacccctctgcccgtgtgagaaccatcccttatataaagtgattcttcacagaaatccctcaagtcctgcgctgctctaatgca<br>tgtaaggtgtggagagcactattcacagcaccattccagctccaaggccaccactgaactacccacatgactcaagctctttctgtctctagcgctttac<br>cagcaaaaccagcgcaacctgtatgcatggtagctcagagggacactgtgacaatcaacaaagaatggcaaaacaaaaagcagctcatctagggaagcag<br>tactgcatgtggctaagagctggggtcaccatgtcgtcactaggcctcggtcctatggaggctactacctacacgcttacagcttt<font color="green"><u>AAAAGAGACTCTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGCGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAAGAG<br>ACTCTTAG</u></font>gcacacagtgaggcaatgatgtatttttctaccaataattttattgagaagggtagagagggggactgattcactcctagccttctactgtt<br>caggctttaaaactagcaaaccagagccaaggctgagaaaacctaggcatcataatcattacagactagcaaagggacaatttagctttcaaccctatga<br>ctgcaaaatatggtaatggggaagtccattggagaaccccccctcccaaaaaaacaagcaagctaatctttgcaggctagtatctctttccctaaccaga<br>ataaaatcaaagagctgagtgaaagcaaaggcctggcagcatgcattcaaataatccaaaaccctgtcttctaatcttgagctcacaatctgac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:HNRNPM:NM:005968:1/16	
0	chr19	19828363	19828664	1001188	0	-	pAlu19-19812470; RIP_Alu_chr19_019_01	NA	NA	SINE	Alu	Y	caaaataatctggctcagatggagatctgtttttctctccaatgctttgggtgtctgtttcaaaagccctattcatatccgatggtgtctacatgaggtg<br>gactttcatagcgagaacttttagagctatttctatctggacttatgctggaaattcagcagtattttttccatgtccctactataggtagaaactgagg<br>ctgaaacactaatcacattctcatgattgtgaaggtgtaattctacccaggaggcctgcaggctctcctcctgcagctcaggcctcactctctgatgtga<br>cactagagtgctgctgtggcaaatggggttcatataaaatgtgagctgtgctccaggctgtgcctcagtggcagatgttataggtcaag<font color="green"><u>AGAGGACACTA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGACGGGCGGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAATATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCCAGGCATGGTGGCAGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCATGAACCCAGGAGGCGGAGCTTGGAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGGAAGACTCCGTCTCAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AGAGGCCACTAG</u></font>gtaaccaggagaaagcaagcaggagtgctgtaacccaatgccagggagtacagagccactgctctaaaatgtaaatagccaaaaag<br>atagaaccctattcaaccatttttgtagcacaatgaaagcctaccttcagaaggcacctggattaaagctactaaactacttcctgttatgaagatgtga<br>aaagtttgtcattgaatataagcaattagcatacacagatggcctcttcaatctgttcataggatgaactatgtatgacatggcgctggaaattcttcta<br>tttgtgaactaattatggtgaccatctttctgtctttgcgatcccttaagcagactgatgatgatgcatgtcacaattaagttcaattgtgtaataaaac<br>cat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	26362410	26362722	1001189	0	-	pAlu1-25722767; RIP_Alu_chr1_026_01	NA	NA	SINE	Alu	Ya5	tcgacctcgggcggggtccagctggaggggtcctcacctcatcaaacatacaaggcgaaaatgaccagagtcagcccgcatatcaggatgggttttttat<br>ttaaggtacaactttccaggaagttggagagctccagaggactgcgtccatcgccctctccagcctcatttaattcaacaaactgtgcctgtggccctac<br>tatgtgcgccgtccctgtactaggaaaaaggtcaaagattaactagagaacccagagtaccagcgggtcccacaaaaggtgacaaattgaggcccaaaaa<br>taggactgtacttgggagctcagagcaggtgaggctgactgggggcattcaggacggcttcctggaggagaatatacgttatctccgagaagga<font color="green"><u>AGAAGG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAG</font><font color="green"><u>AGAAGG</u></font>aagagcagagagaaaaggaacggcaacccaggcaaaggaaggaggtgcatgaaggatgcaggcttggaggtgcgaacctgt<br>gatgaaaataggcgaacttgtgtgtccttgcaggaaagggaggcagtggcaggagcctgccggctggcaggaaaggtttccttcttttctttttttattt<br>ttatttttattttttgagacggagtctggccctgttgcccaggctggagtgcaatggctcgatctcggctcactgcaacctccgcctctgggattcaagc<br>gattctcctgcctcagcctcccgagtagctgggattacaggcgcgcgcctccaagctcagctaatttttgtatttttagtagagcccatgttggccaggc<br>tggtctcgaactc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	67786462	67786463	1001190	0	-	pAlu1-45077537; RIP_Alu_chr1_067_01	NA	NA	SINE	Alu	Yd8	gcagaaactctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaaatattttcaacccagaatttcatatccagccaaactaagct<br>tcaaaagtgaaggagaaataaaatcctttacagacaagcaaatgctgagagattttgtcaccaccaggcctgccctaaaagagctcttgaaggaagcact<br>aaacatggaaaggaacaacaggtaccagccactgcaaaatcatgccaaattgtaaagaccatcgaggctaggaagaaactgcatcaactaacgagcaaaa<br>taaccagctaacatcataatgacaggatcaaattcacacataacaatattaactttaaatgtaaatggactaaatgctccaattaa<font color="green"><u>AAGACACAGACTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCT<br>CTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCTGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGAAGGC<br>GGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAACAAACAAACAAACAAACAAACAAAC<br>AAA</font><font color="green"><u>AAGACACAGACTGG</u></font>caaattggataaagagtcaagacccatcagtgtgctgtattcaggaaacccatctcacgtgcagagacacacataggctcaaa<br>ataaagggatggaggaagatctaccaagcaaatggaaaacacaaaaaggcaggagttgcaatcctagtctctgataaaacagactttaaaccaacaaagg<br>tcaaaagagacaaagaaggccattacatcatggtaaagggatcaattcaacaagaagagctaactatcctaaatatagatgcacccaatacaggagcacc<br>cagattcataaagcaagtccttagagacctacaaagagacttagactcccacacaataataatgggagacttcaacaccccactgtcaactttagacaca<br>tca	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	46138708	46139023	1001191	0	-	pAlu1-45752472; RIP_Alu_chr1_046_01	NA	NA	SINE	Alu	Yb7	acatgatggattaaaaatttaaatttaagacctgaaactataaaaaccctaaaagaatacctaggaaaaactcttatggacattggcctaggcaaataat<br>ttatgactaagacctcaaaaacaaatatgaccaaaacgaaaatggacaaatgagacttaattaaactaaagagcttctgtacagcacaagaaacaatcaa<br>cagaataaaaagacaacccatagaatgggagaaaatatctgccaactacgcatccaacaaaggactaatatccagaatctataaggaacttaaatcgtaa<br>gaaaaaaacaaataaatctgctaaaaagtaggcaatagaaacgaacagacacaaaagaagacaagtgaccaacaaactcatgaaaaa<font color="green"><u>AATATCCAACATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AATATCCAACATC</u></font>actaatcatcagagaaatgaaaattaaaccacaataagataccatcttataccagtcagaatggaaaatga<br>cagatgttggtgaggatgcagagaaaagggaatgcttatatactgttggtgggaatgtaaattagttcaacccctacagaaaatagtatagtgatttcca<br>cagaactaaaaatagaactaccatttgatctagcaatcccactactggctatctacccaagggtaaatcttttttttttttttttttttttgagagagag<br>agagtctcgctctgtcgcccaggctggagtgcagtggcaccatctcggctcactgcaaccactggctcccaggtacaagcaattcttctgcctcagcctc<br>ccaagcatctgggact	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MAST2:NM:015112:4/29	
0	chr1	57015214	57015534	1001192	0	+	pAlu1-56600233; RIP_Alu_chr1_056_02	NA	NA	SINE	Alu	Ya5	aacagcatgaaacaaaatgaccacgagccctcattttgatcactagtcaaattttaaaatatctttgtttcaaatttcagagtgtcttctttgaggtgca<br>ctaacatctgaccccatttattttacggagagggaagtgaggtcaccctctgaactagtggtaggcttttaaataggagcctggtctcctgactgcctgt<br>tctgccacctacagcattcgaccttgatacagacaaacactgctattacaaacaaacaacaaatctctgccatttattaagagcttacaacatcggaatt<br>ccactttgctgaattagagatatttatctcaatcctcacaacatccctgggggaaggatttgatttcactatttcctatatt<font color="green"><u>AGAAAATAGAAGGCCCAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGG<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAACAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAATAGAAGGCCCAG</u></font>agatatcaaataactttcccaggatcacacagctagtgtgtggagctcaaactatgaatcc<br>aaggttatctgactcctaaatcaatgcccttaacttcatgtaacatactccctggatcttctaatttttaattcattcaatttaaacacactttaattat<br>gcagctggtaagaaagaaatattagaccatctctctgcttttgaagaatttataatttagtcagggaaatgagatacacccagggaaacagaaaatcaca<br>aaaatagactggatatacttgagtcttaagccgagtgctgtctaagtccattctattcttcagccaacatttattgaacaactattaaatgctgtatgcc<br>cccttccccatatacacctta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C1orf168:NM:001004303:4/20	
0	chr1	93131499	93131500	1001193	0	-	pAlu1-58314076; RIP_Alu_chr1_089_01	NA	NA	SINE	Alu	Yc2	atacagcacactgatgggtcttgactctttatccaatttgccagtctgtgtcttttgattggaacatttagcccatttacatttaaggttaatattgtta<br>tgtgtgaatttgatcctgtcattatgatgttagctggttattttgctcgtgagttgatgcagtttcttcctagccttgatggtctttacaatttggcatg<br>tttttgctgcggctggtaccggttgttcctttccatgtttagtgcttccttcaggagctcttgtagggcaggcctggtggtgacaaaatctctgagcatt<br>tgcttgtctgtaaagtattttatttctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattcttttctttaagt<font color="green"><u>ATGTTGA<br></u></font><font color="red">AGGGCCGGGTGCAGTGGTTCACGCCTGTAATCTCAGCACTTTGGGAGGCTGTGGTGGGTGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACAT<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTTAGCCGGGCTTGGTAGCGGGTGCCTGTAGTCCCAGCTACTCGGAAGGCTGAGGCAGGAGAATG<br>GTGTGAACCCAGGAGGCAGAGCTTGCTGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGAGAGCGAGAGTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAGA</font><font color="green"><u>ATGTTGA</u></font>ctattggcccccactctcttctggcttgtagagtttctgctgagagatccgctgttagtctgatgggcttccctttgt<br>gggtaacccgacctttctctctagctgcccttaacattttttccttcatttcaactttggtgaatctgacaattatgtgtcttggagttgctcttctcga<br>ggagtatctttgtggcattctctgtatttcctgaatttgaatgttggcctgccttgctagattggggaagttctcttggataatatcctgcagagtgttt<br>tccaacttggttccattctccctgtcactttcaggtacaccaatcagatgtagatttggtcttttcacatagtcccatatttcttggaggctttgttcat<br>ttctttttattcttt	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FAM69A:NM:001006605:1/5	
0	chr1	66973811	66974124	1001194	0	+	pAlu1-66558828; RIP_Alu_chr1_066_01	NA	NA	SINE	Alu	Yb7	tctggtaaccaccattctactctctaattctataagatcaacttttatttttatgttattttattttattttattttattttatttagttttttgagatg<br>aagtctccctctgttgcccaagctggagtgcagtggcacgatctcggctaatagcaacatccacatcctgggttcaagcgatcctcctgcctcagcctcc<br>caagtagctgggattacaggcatgcaccatcatcctggctaatttttgtattttcgatagagacggggtttcaccatgttggccaggctggtcttgaact<br>cccagcctcagatgatccccgttccttggcctcccaaagtgccactgtgcccagccaagatcaacttttaaatattccacat<font color="green"><u>AAGAGTGAGATCGTGTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTGAGATCGTGTGG</u></font>tattggtctttctgtgcctggctcatttcatttaccacgtttttaatgcattataattttttattaaa<br>tatgttcagattatttttcttcaaatgaaggaagttgtactttaataaaaatcaggacatctcaaacttgactgtatttctcaatcaaatgctggttctg<br>aattgatgctaaaaagaaatatatgtgtatacatatttaaataatataaatatttatttataatatttacatatacaacctagatacatataaaacctat<br>acaatctataacatataaaataacacattatattcataaatataaatatttatacaaatattttaaatataaatatttatacaaatattttaaatataaa<br>tatttatacaaata	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SGIP1:NM:032291:21/25	
0	chr1	86178394	86178709	1001195	0	+	pAlu1-85698023; RIP_Alu_chr1_086_02	NA	NA	SINE	Alu	Yc1	tatttctgtttcattatgtgcagtgtgcttatattatgtacttgcagaattttactatgccagtatctagtgcctaaggagttcaaataaaccagatgag<br>gaaatgatgtagcacagagattatactgaatcatatctgttactgaacataggatatatactgccctcttaatttcttttctggcatgaagtagtagtat<br>aaataaataaaaataatgactactcacctgtgctatctacttactgagtcagtctttgaaactaagactgtgcctagtatgtcttattaaggtttccaaa<br>agttgaagataaactatctacaaacactggggatgaattgaagaaaaagcaattttatacaaaccctgcattcattaacacttttaaa<font color="green"><u>AAGTGCCATAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTGCCATAAG</u></font>atatattcagccatttatttagtcaagaaacatatttgagagcataatacatgcaaggcatgctaaataatg<br>taaaatgttttatattatcgattacatttagaatataagacaagcacttcatgattatggaggttcctgattagacaatagtctactttggagtcacagt<br>tcctccacttcagacatttggatacataaagttttataaaactgaatggtctgcttagtatccaaatagggatttcagcttctaacgtttccctaacaac<br>tatttgactcttggatcaaaaatgtagtaataaaataaaagttcagaacaaagttttgcccgaggaaggtctggcagtgatcaagagaatatgcctggaa<br>tgtctactcaacagat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:COL24A1:NM:152890:24/60	
0	chr1	91397376	91397644	1001196	0	+	pAlu1-90961213; RIP_Alu_chr1_091_01	NA	NA	SINE	Alu	Ya5a2	tatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacttcgtgatccgcccacctcggcctcccaaagtgctgggatta<br>caggcgcaagccactgtgcccagccaaagtttcccctttttataaggatgccttattttggattagggcttaccgtaagatctcaacataactaattaca<br>atggcagcaaccctatttccaagtacggtcccattctgggggttaggacaccgatatatgaattgttgggggacatgattcaactcctaacaagggactt<br>tgcagaagattaaagttatagctttgagatgggaaaattattctgaattatcctggggggcccaatttagttacttgagtccttaa<font color="green"><u>AAGTGGAGAATCTT<br></u></font><font color="red">CTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACGAAAAATTAG<br>CCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATC<br>CCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTGGAGAATCTT</u></font>tcccatctgcagtcagg<br>gagagattggtgacgatggaagggtcagagaaatgcaacattgccagctttgaagatggaggaaggtgccatgagccaagaaatgatggtcgcctcagag<br>gctagaaaaggcaaggaagcaggttctcccctgaagcctccagaaaggaatcagacgccgtgttcctagttcagtggcctgtgttggatgtctgaactac<br>agttgtaagatcatacatttgtgttattttaagccactacgtttgtagtaatttgttataacagccatagaaaactactaatacaacctcccccaaccac<br>agctcctaagtttgccatgtgatctctcatcccccgataaataatgcttctatgctgggagtaagtcac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	14585345	14585346	1001197	0	-	pAlu1-93327698; RIP_Alu_chr1_014_01	NA	NA	SINE	Alu	Ya5	agtgggggccaatattcaacattcttaaagaaaagaattttccaccccgaatttcatatccagccaaactaagcttcataagtgaaggagaaataaacta<br>ctttacagacaagcaaatgctgagagattttgtcaccaccaggcctgccctaaaagagctcctgaaggaagtgctaaacatggaaaggaacaactggtac<br>cagccactgcaaaatcatgccaaaatgtaaagaccattgagactaggaagaaactgcatcaactaacgagcaaaataaccagctaacatcatcatgacag<br>gatcaaattcacacataacaatattaactttaaatgtaaatggactaaatgctccaattaaaagacacagactggcaaattggata<font color="green"><u>AAGAGTCAAGACCC<br></u></font><font color="red">GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAGTCAAGACCC</u></font>atcagtgtgctgtattcaggaaacccatctcatgtgcagagacacacataggctcaaaataaaaggatggaggaagatctacca<br>agcaaatggaaaacaaaaaaaggcaggggttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggccattac<br>atcatggtaaagggatcaattcaacaagaagagctaactatcctaaaaatatatgtacccaatacaggagcacccagattcataaagcaagtcctgagtg<br>acctacaaagagacttagactcccacacattaataatgggagattttaacaccccactgtcaacatcagacagatcaacgagacagaaagtcaacaagga<br>ta	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	156896012	156896323	1001198	0	-	pAlu1-155407159; RIP_Alu_chr1_155_02	NA	NA	SINE	Alu	Yb7	tctgtttcttatatttaaagtgagattcttataaatagcatataatcaggccttgtttttattctattcaatctggtaatttttcttttttaattgtgat<br>atttagacaatttacacttagtgcaatcatcaatatggtttattttaaatctggcaagttgctatgttttttctttttatctatcactttatgtctcctt<br>tagatcaattttgtatttattgtgattccatcttatcttcaaattggcctattagctacaattgctgttttgtgtttgtgtgtgtatgtttattatagca<br>cagtgattttgccattgtgatttggagtccttttagggtctctgacacactcttagtggattcacaaagttaaaatattttcat<font color="green"><u>AATAATGCTAAGACTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AATAATGCTAAGACTA</u></font>ttattttcttttacagacttattcttttataagcatagaatggagtttcccagagcctagagatgggtgatg<br>atgtcactgttctgtctaatggagtatatgcttgtacattcttttctttcaaagcttcttgttttgatttcttatatgggaactattaatcagtctaact<br>atataagcaaaagatattttgcattcttaataatttttaaaattgtaaagggatcccaaaagcacaaatttgaaagccactattccaggaattaaaatat<br>agatttttttaatctatcatagtctaatttcaaataatattatgcatttcatgtttaatataagattcttaaattgatacttccatttgttttcaccctt<br>gtgctattggtg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SPTA1:NM:003126:18/52	
0	chr1	159201660	159201962	1001199	0	+	pAlu1-157712809; RIP_Alu_chr1_157_01	NA	NA	SINE	Alu	Ya4	cagcctgggcaacagagggagactccatctcaaacagaaaaaaaaacaaaaatgttttgactgcagttcaaaaattgtttcaaaactttgttgcaatttt<br>aaaaatatttctcaaaattaaaatgtttggaagactgcccaaacaatataaacaaattcaattgaaacatgcatttaacttttataaacttatatttatg<br>actcaacgacaaaaaagcaagcaacccaattaaaaatttgggcaaagtaggacttacagtatgatgttgggaaaaaaaactggacaaaggacttggatag<br>acatttcttcaaagaaggtatacgaatgggcaacaagcacatgaaaagatattcaacaccactcatcattagggaaatgcaaatcaa<font color="green"><u>AACTACAGTGAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AACTACAGTGAAA</u></font>taccacttcacaccctttagtatggttattaccacggggaccgagggaggtgaacagaaaacaagaaatgttgatatgaatggg<br>ccgggcacgatggctcatgcctgtaatcccaacactttaggaggccgaagtgggtggatcacttgaggtcaggagttcgagaccagcctggccaatatgt<br>tgaaaccccgtctctactaaaaacacacaaaaatgtgctgggtatggtggtgtgcacctgtaatctcagctactcgggagtctgaggcagaagaatcgct<br>tgaacccaggaggcagaggttgcagtgagccaagatcacaccattgcactccagcctgtgcgacaagagcaaaactccatctcaaaaaaaaaaaaaaaaa<br>aga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	162787548	162787860	1001200	0	-	pAlu1-161216853; RIP_Alu_chr1_161_01	NA	NA	SINE	Alu	Sp	ggtgctgctgaaaagatacctgaaaatatggaagtgactttggaactgggtaacaggcagaggatggaacagttgggagggctcagaagaagacaggaaa<br>atgtgggaaagtttggaacttcctagagacttgttgaatggcttcgaccaaaagcctgatagtgatatatacaatgaagtccaggctgaggtggattcag<br>atggagatgaggaacttgttggaaactggaacaaaggtgactcttgttatagtttagcaaagagactagcagcattttgtccctgccctagaagtttgtg<br>gaactttggccctgagagagatgatttagggtatctggtggcagaaatttttaagcagcaaagcattcaagaggtgacttgggtactgtta<font color="green"><u>AAGGCATTC<br></u></font><font color="red">AGTTTTGGTGGGGTGTGGTGGCACACACCTGCAATTCCAGCACTTAGGGAGGCCGAGGCGGGTGAATCACCTGAGGTTGGGAGTTCGAGACCAGCCTAAC<br>CAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAATTAGCCAGTCTTGGTGTCACATGCCTGTAATCTCAGCTGCTCAGGAGGCTGAGTCAGGAGAA<br>TCTCTTGAACCCAGGAGGTGGAGGTTGTGGTGAGCTGAGATGGTGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCTTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGGCATTC</u></font>ggttttaaaagggaagcagagcataaaagttcagaaaatttgcaccctgacaatgtgatagaaaagaaaaacccattt<br>tctggggagaaattcaagctggctgcagaaatttgcataagtaacgaagagccaaatgtcaatccccaagacaatgggaaaaatgtctccagggcatgtc<br>agaggttttcacagcagcccctcacatcacaggccagaggcctaggagaaaatggtttcgtgggctgggcctggggtcctcgagcggtgtgcagtctatg<br>gacttggtgcgccacatcatagctactccagccatgactaaaaggggtcaagatacagcttgggcttttgcttcagtggtggaaaccccaagccttggca<br>gcttccatatgat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	178559626	178559936	1001201	0	-	pAlu1-176813158; RIP_Alu_chr1_177_02	NA	NA	SINE	Alu	Yb7	actaggataacttttcaaaacatgggacaataagacataagcaacaaaaagttaaaaagtcagagaattaagtgaaaatgtttttattagtttttttttg<br>cctatttgtttatgcaatcagtgttaagttgtcatcagcttaataataatgggttataagatacttgcaagcctcatgataacctcaaatcaaaaaacat<br>atatacaaaaataaaaagcaatacattaaaatataccaacagagaaaactaccttcactaaaggaagacaggaagcaaggaaagaagaaagagaagacca<br>gaaaacaaataacagaatggcagaagcaagtccttacctaatcaataatgacattgaatgtaaatggactaaaaactctcctatcaa<font color="green"><u>AAGACATAGAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGACATAGAGTA</u></font>actgagtggattaaaaaatcaagacccaatgatctgttgcctacaagagacacacttcacctataaagttacacac<br>agactgaaaataaaggaatgcaaaaagatattccatcccagtggaaacaaaaaaagagcaggagtagctatagttatatcagacaaaatagatttcaaga<br>caaaaactataagaagagacaaggtcattatataatgataaaggggtcaattcagcaaaaggatataataattataaatatatatgcatccaacactgaa<br>gcacccagatacataaaggaaatattattagaggtaaagagagagagagaccccaatacaatagtagctggagactccaacataccactgtcagcattgg<br>acagatctttc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ACBD6:NM:032360:6/8	
0	chr1	223828938	223829243	1001202	0	+	pAlu1-222169659; RIP_Alu_chr1_222_01	NA	NA	SINE	Alu	Yc1	ttgtgttaggtttcaactcgattccacaaatattgttcacatttataacacaggtcctggcatatagtaaaagtgggcgagaccagctcagttatataag<br>attgtgggccaggcgcggtggctcacacctgtaatcccagcacattgagaggctgaggtgagtggatcacctgaggtcaggagttcgagaccagcctggc<br>caacatggcaaaatcccatctctactaaaaataccaaaaattagccaggcatggtgcctcgtgcctgtagtcccagctacttgggaggctgagacatgag<br>attcgcttgaacctgggaggcagaggttgccgtgagccaacagtacgccactgcactccagcctgggtgacaaagtgagactctgtctccaa<font color="green"><u>AATATATA<br></u></font><font color="red">AAAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGGT<br>AACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AATATATA</u></font>tatataaaaaaaaaaaaagattgtgcattcagatacgaataataaacatattttctcaaataggaaagtgaacaataaatagcatg<br>tgctatatactgtgttaagcactagacgagctttttcctagtccatagcaccaacaccaccactctgaaatcacaacatcctacaaatgtagggttcact<br>ccagaatcctccgtgaccctcactgctccacacacacagtcaccaagccctgtcaattctatttccaaaagactcctacaatgcatcagtaccctttgtt<br>cacaatgctcaatgctcaaaagctttaatttgggccctccctagttcctcaactggcttatttcaaaaatctccttacctgtatctctcactgcaatctt<br>attctt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ENAH:NM:018212:1/14	
0	chr1	226638797	226639112	1001203	0	-	pAlu1-224957620; RIP_Alu_chr1_224_02	NA	NA	SINE	Alu	Ya5	cctatcttatctcttagcccagttgcccaaggtaccagtatccttatctgcaggtgagcatgaggacctctgtgttgaagacacatcaacctttggatac<br>agaatgcagagtctcaggagataggccaattatttgcattttgaatgctatctgtttctataccatatggtagtaaaaatttgcatggtatgattttaaa<br>aacttgaatttttaacttaatgttctatgttctgtagtaatctcattttcatgttaccaaaggaaacctgttatgaccagaataaattattttcccaaca<br>ttgaactaagaattcctagagctggggaaataaaggaatgtcctttgctgccagcctccttccttcctccttaggatacctctttaa<font color="green"><u>AATTAATTATTAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AATTAATTATTAG</u></font>tttggttttcccatttaatagagaaattatttaggatgttttctaaaatgtccaagtagctagctataact<br>tgctgtttattctttgattgacagtgactaatgtcatttcacagtggccaggaaatgtgggctgtatgatctccactttgagaggattttgacccaatgc<br>ctgggtcatttatgtggctggcctctggatatctgaaagtaatatgaatccttcatttgctggtttcaaagtactatctacctatcttcctgtctatcac<br>ataaatgtttccagtgatgccatcaatagttacagaaattgattgatttttatatatctgacctattgatttctaaacacaatatattaaaatcttctac<br>tatgattaccaatgta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	226881438	226881764	1001204	0	-	pAlu1-225186851; RIP_Alu_chr1_225_01	NA	NA	SINE	Alu	Ya4b	tccttgaggatggatgatgcaccccttaccatcccattaaaacctaatcacccttaccccgatcaatgccagtatcccatcccaccgcatgctttaaaag<br>gattaaagcctgttatcacttatctgttgtagcatggccttttaaagcctataaactctccttacaattcccccattttacctgtccaaaaactggacaa<br>gccttacattttagttcaggatctgcgccttatcaacaaaattgtcttgcctatccaccccatggtgccaaacccatatattctcctatcctcaatacct<br>ccctccacaacccattattctgttctagataaacctagctgaccccataaatcctaaatcctttccacactcccctgtccattccttaaaa<font color="green"><u>AACAGCCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACAGCCCT</u></font>aaaatctgctcccacactagttctccctaactcatcccaacctttttcattacacacagccgaa<br>gtgcagggctatgtggttggaattcttacacaagagccaggaccacgccctgtagcctttctgtccaaataacttgaccttactgttttagcctagccct<br>catgtctgcgtggggtggctgccactgccttaatacttttagagaccctcaaaatcacaaactatgctcaactcactctctacagttctcataacttcca<br>aaatctattttcttcctcacacctgatgcatatactttctgccctcctccactacctctcagcaagccaaactcattgccttaactcgagccctcactct<br>tgcaaaaggactacgtatcaatattta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	233614164	233614165	1001205	0	-	pAlu1-42180814; RIP_Alu_chr1_105_02	NA	NA	SINE	Alu	Yg6	acctctacgcaaataaactagaaaatctagaagaaatggataaattcctcaacacgtacactctcccaagactaaaccaggaagaaattgaatctctgaa<br>tagaccaataacaggatctgaaattgtggcaataatcagtaatttaccaaccaaaaagagtccaggaccagatggattcacagccaaattctaccagaga<br>tacaaggaggaactggtaccattccttctgaaactattccaatcaataggaaaagagggaatcctccctaactcattttatgaggccagcatcatcctga<br>taccaaagccgggcagagacacaaccaaaaaagagaatttttagaccaatatccttgatgaacattgatgcaaaaatcctcaataa<font color="green"><u>AATACTGGCAAACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGATGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACAGGGGAGGCTGAGGCAGGAGAATGGCATG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCAAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AATACTGGCAAACCG</u></font>gaatccagcagcacatcaaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaaggctggttcaat<br>atattcaaatcaataaatgtaatccagcatataaacagaaccaaagacaaaaaccacatgattatctcaatagatgcagaaaaggcctttgacaaaattc<br>aacaactcttcatgctaaaaactctccatctggtatcctttctcttcagcctaacggtatcatctgacagttcttgtagtgtaggtttgcaggcaacaaa<br>ttctataggcctttgttcctctgaaaatatctttatttcatcctcagtatacttttttctgggtatggattcctgggtttgcagggtattcccacttgtc<br>cgagttttc	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TBCE:NM:001079515:2/17	
0	chr1	62163191	62163526	1001206	0	+	pAlu1-61748210; RIP_Alu_chr1_062_02	NA	NA	SINE	Alu	Yd2	tggtttttgtgaaaaagagattcttaaaattattattaaaaggcttgtacatttaaagtagtataactttagtcaactattttctggaaactctgggaat<br>attacatttaaataatgctcacttatataaaccaatcagaaagagattctttattttgagagatttatatctaatttattaatatgctctgaaggtagga<br>aaatatttcacactcaaaatgaaaggtaaggacttttctttctccagtgcagatacacaatgtattctgcttctgtcctgcagctatagccatatgtcaa<br>atgtagacataggaatgtaaaaccctactggttttacgttaaagagctgttctttccagtaggacccaagacatgttcttgtacaaa<font color="green"><u>AAGACAGACAGGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCAAGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAGTTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGG<br>CGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACAGACAGGC</u></font>aaacaagaagactaaaaaatgcattctctgttgtctctcaatcaatcgaga<br>atagatctttatagaagcagcataatatagattctcatcccaacaaataactctaaatggtcagaccataaaaccaaacttcatttattcctactatcag<br>cgaggaattacaagtacacatcagaaccaaacttggtctcatatcagaaacaaaatcatagaactggaaataaaaatcagagaaactgtcaaaaaagcaa<br>agtttgttgccacttggaattaactgtgggtgccaaaaaatcatgtaaatgggcttaaacagctcatgaattgcatctctgaggcatcacaatttaattg<br>gttctggtaggtgagtctgcttgagcatctctgtgg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:INADL:NM:176877:26/43	
0	chr1	69579593	69579899	1001207	0	+	pAlu1-69191628; RIP_Alu_chr1_069_01	NA	NA	SINE	Alu	Ya5	ccaatgcccgtacttccattgtatctagggagtaactagcttgcttttgattttacaggctcgtaggcagaaggggcttgctttgtctcagatgagactt<br>cagactatggacttttgagttaatgctgaaatgaattaagattttgagggactgttgggaaggcatgattagttttgaaatgtgaggacatgagatttgg<br>gaggggccgggggcagaatcatatggtttggttgtgtccccatccaaatctcatcttgaattgtagctcccataattcccacatgtcatgggagacatct<br>ggtgggaagtaattgaatcacgggaatgggtctttcccttgctgttctcatgatagtgaataagtttcatgagatctgatggttttat<font color="green"><u>AAAGGGGAGTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAGGGGAGTTC</u></font>ccctgaacacactctcttgcctgacaccatgtaaaatgtgactttgttcctccttcaccttctgccataattgtgagacct<br>caccagccatgtggaattgtgagtcagttaaacctttttcctttataaattacccagtcttgaacatgtctttattagcagcgtgagaacagtctaatac<br>agttggtgtcatgcatggagctcatctgtgatcccctggacactgcaaaggaaataagactcattccagattccgagtattagtggaaagtagctcctaa<br>gacactaatagatttttttttcctctaaattctcagcaattgtctgccatggatgacacttgaagtttaaatgtttcacagtctgatgccaagtagagct<br>ggtaaag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	117892575	117892781	1001208	0	+	pAlu1-117238000; RIP_Alu_chr1_117_01	NA	NA	SINE	Alu	Ya5a2	agaccaacccctgcaccaaaaaaaaaaaaaagttataagagcaagacaaaagacaaaaataaatctctttgaagacattacatagctattaatagataca<br>gagtcagttagagttaggtggccagacttgagtggcgagaatatcagagcaaataaatacattttgagataaacccagaattctgcagggctttttcctt<br>gaggcatttggcaatttaaaagcagcacagggctgagaagctaggaagctgggcagcagcagacacttaaataaggctagaaagctgagcagagctttca<br>gcagtctaacaagcctaaggaaacaaaaattagagttcagggttcaccaagaaaaggccccagtaaacaatctagacctcccatt<font color="green"><u>AAGACACCCAGAAGC<br></u></font><font color="red">CTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGA<br>GAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGACACCCAGAAGC</u></font>tatactctaagaggtaaggtaaaccagaaataaaaggtgttcacaaaagactaaaacctagtcctgaaccagtgtaat<br>cccaatgtgattaataggggttaatatgatctgctccgtctctacctccctaccagagagttatacagcagaagagagaattcatcaccaggaagacaga<br>ctaactgaaaatatccatcctaaagttcagggagaagggaaaaaaagagatggaaagtacagaaaagaccatgagacatatgtgatacagtgatgaggtc<br>taatatataacaatatgtaatagtctcagaaaaacaaaaagagaatggggcagaagcaatattttaagagctactaaccaagaattttctaaaactgtga<br>aaaaaaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	4205000	4205001	1001209	0	-	pAlu1-181289027; RIP_Alu_chr1_004_01	NA	NA	SINE	Alu	Yc1	taggcatgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagagcttctgcac<br>agcagaagaaagtaccaccagagtgaacaggcaacctacaaaatgggagaaaattttcacctactcatctgacaaagagctaatatccagaatccacaat<br>gaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcgaaggacatgaacagacacttctcaagggaagacattcatgcagcca<br>aaaaacacatgaaaaaatgctcaccatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagtt<font color="green"><u>AGAATGGCAATCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCTT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCTAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AGAATGGCAATCAT</u></font>taaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttactttgttggtgggactgtaa<br>actagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatataccca<br>aaggactataaatcatgctgctataaagacacatgcacacatatgtttattgtggcactattcacaatagcaaagtcttggaaccaacccaaatgtccaa<br>caatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgtagccataaaaaatgatgagttcatgtcctttgtagggacatggat<br>gaaattgg	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr20	2812017	2812321	1001210	0	+	pAlu20-2811916; RIP_Alu_chr20_002_02	NA	NA	SINE	Alu	Y	aacactttttttttttttttttttttttgagacaggttctcactctgtatgtagcccaggctggagcgcagtggcatgatcatggctcattgcagccttg<br>acctcctgggctcgggtgatcctcccacctcagcctcctgagtagctgggactacaggcatgcaccaccatgcccagctaattttgcaaccagtaggaat<br>aatgcaaatagtacaaaatctgaaaaatacctaaatctgaaacacttctggtcccaagcatttcagataaggaatactcaacctgaacctagcaaatatc<br>atttgaaaaaataatatcttaatctgtctcttcaagtaaaagtattatttaaatagtgagtgaaaaaggaactacttcttttcttag<font color="green"><u>AAAGAAATGTGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCCACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAGAAA</u></font>tgcaatggtagagcgttttcctcgttggaattttttttacatgtaatcattataagctataacttacatattataaaattctcctttt<br>taaaatgtacagttctgtggttttttgtatatgcatagagttgtgcagcttttgccactgtctagtttaagaacatttcatcaccccaaaagagaccctg<br>cacccattagcctcacttcccattctctcctccctccagtccctggcaactactaatcttcctgtttctttggatttgcctattctggacatttcatata<br>aatgaaatcatacaatatgtgaccttttgtagctggcttcttttacttagcataatgtttctggggttcattcatgttgtatcatgtatcagtacttca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PTPRA:NM:080840:1/23	
0	chr20	17051451	17051774	1001211	0	-	pAlu20-17051362; RIP_Alu_chr20_017_01	NA	NA	SINE	Alu	Ya5	ggctgcagtgagctatggtcacaccactgcactgtagcctaggtgacaaagtgagacttgtctatttaaagaaagagagatgaagaatcttggaaaaagg<br>aatcaatgaaaatggaataaaatatttcatttttattattctaaaatgtaactgtataatttaataatagtaagaatgtactgggtaattataacataga<br>ataaaagaaattaaatgacagcaacatcacaagggatgggagggagaaattgggaatattttttcaatgtacctgcaccactcataaagcagaagcatgt<br>aatttgaaggtggaatcagattagctaaaaatgtatattgtaagctttagggcaaccacagttttttttttttttttttttttta<font color="green"><u>AAGAAGTGAATAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGTGAATAAGAG</u></font>gaggagataaaatggaacaatacagagacttaattaaaacaacggaaagcataaaacaac<br>tacaaacatggttgatgttaaagcaaatatatgaataatcccttggaatgagtagtctaaatataccagctaaaagacagagattgtcagataaaaatgc<br>aagacccaagtatatgttgtttacataaaattcactttaaatataaagactccgataagctaaaattaaagaaatggacaatggagaaagagaaaccata<br>ctaatcgaaagaaaactggaatgaaaatattaacttcagccaaagcagacttcaaaacaaggagaattgtcagagataaagagcagcactgggtaattat<br>gaatgggtaaatttttgaagaagat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr20	35042238	35042539	1001212	0	+	pAlu20-36247152; RIP_Alu_chr20_035_02	NA	NA	SINE	Alu	Ya1	actctgttgcccaggccggagtgcagtggcactatcttggctcactgcaacctccgcctccgaggttcaaggaattctgagtcagcctgccgagtagctg<br>ggattataggtgtgcgacaccatgcccggctaatttttgtatttttagtaagatggggtttcaccatgttggccaggctggtctggaagtcctgacttca<br>agtgatccacacacctcagcctctcaaagtgctgggattacaggcgtgagccaccctgcctggccgcaagcatactttttataataattatatcttacat<br>gtattcagcattttctatgtgccaggctcaattctcataacactctataataaagccattatttcaattttacagatgaagaaat<font color="green"><u>TAAAGCTCAAGAGTT<br></u></font><font color="red">GGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACGACGTCAGCAGATCGAGACCATCCTGGGTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAAAATTAACCGGGCGTGGTGGTGAGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCATGAGAATGGC<br>GTGAACCCAGGAGGCGGAGCTTGCAGTGATCCCAGATCACGCCACTGTACTCCAGCCTGGGCGACAGGCGAAACTCAGTCTCAAAATAAATAAATAAATA<br>AA</font><font color="green"><u>TAAAGCTCAAGAGTT</u></font>tttaagtaacttgcccaagttcacattaggattcaaagccaagcgctgtggtttcacaggcccactttttttttttttttttt<br>gagacagcatttcactctggcacccaggctggtgtgcagtagtgcaatcatagctcattgcagcctcaacctcctgggctcaagtgatcctcccacctca<br>gcctcctgagtagctgggaccacaggcatgcaccgccacctgtctaattttattttttgtagagacagggtctccttatgtagcccaggctggtctccaa<br>actcctgggatcaacgaatcctcctacctcggattctcaaagtgctgggattacaggcgtgaaccattgcacacggcctacactgtgtcttttgataaca<br>gt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr21	38512413	38512742	1001213	0	-	pAlu21-38510832; RIP_Alu_chr21_038_02	NA	NA	SINE	Alu	Ya5	aaatttcacacagctcaagtccgtcctcaaactctcctttaaataataaacgacttcctcctttcctatctcaggagcgctgggcccttccctcggggat<br>ggttatacttacgccatctgctggttgttaatgggactgcacttgctgctgtaagccgcagtaccatggttctgtgcccaagtcctcctagaaaacggag<br>gccttggtattggtggactaattgaagaaatacagatatgccattcatcatttagaacaccaagagggccacctgaggtgttaactttacttttaggagt<br>atttcttagaagaggatatatttcatattttggctctccaattctttatgctgaatctaaggaaatattcttgagttcagcttc<font color="green"><u>AAAAACAGCCCAGGTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACAGCCCAGGTG</u></font>aggttataaatgctgatgtggaaatgtcagagtatgtggtcagtgtgacaacaa<br>tctggataacctgaaaatgttcatgctgcaaatgtttagaaaggctgtatagcattaaaaaaaaatgctttcaatcgaggtgccagaaacatgtgaccta<br>atgcttgcaggtgggaatggagtggattttggctttggaaacatataagactaatttttatttctttttttatagagacagggtctctccctgtttccca<br>ggctgaatcatagctcattgcagcctcaaactcctgagctcaataaatactcctgcctcggcctccagagtagctgagactacaggcatatgccactgtg<br>ctcagctaatttctttaaattttttgtagc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr21	13338191	13338504	1001214	0	-	pAlu21-13338095; RIP_Alu_chr21_013_02	NA	NA	SINE	Alu	Sc	atgttcaagaaatgttataaaactgtgaattaaatgttcattattcaagaaatgaattgaactttacctaatccttatttgacagtatatttttgtggca<br>aacattaacatttgacaaattagaatttcagggatgcagttttgaaagcttccccccaaaaatggaggtttcctctgggtgatacaaactcacttgattc<br>tcttctatcaatgatcccaagattccaaatgccaatgtcaggcactcctgctctaaatgggtcactaaggaagtggctgtaaattaaaagagattggctt<br>caaataaactttgattgcatattcttaaatggtccatggggtttatcctattaccagacaataggattttatctcagctatt<font color="green"><u>AGAAATTCAGTATAAAAG<br></u></font><font color="red">GCCAGGCAAAGTGGTTCATGCCTGTAATCCCAGCACTTTGAGAGGCCAAGGCGGGCAGATCACAAGGTCAGGAGATTGAGACCATCGTGGTCAACATGGT<br>GAAACCCCATCTCTGCTAAAAATACAAAAAATTTAGCTAGGCGTGGTGGCACATGCCTGCGTCCCAGCTGCTCAGGAGGCTGAGGCAGGAGAATTGCTTG<br>AACCAGGGAGGTAAAGATTGCAGTGAGCCGAGATCACACCACTGCACTCCAGCCTGGTGACAGAGCAAGGCTCTGTCTCAAAAAAAAAAAAAAAAAGAGA<br>AAGAAAAAAAGAAA</font><font color="green"><u>AGAAATTCAGTATAAAAG</u></font>tttattctctattagaatgatactcctaggatcctaatgcatatctacttcttaaaatgcaataatcc<br>atttttattctggtttctattgtaattgatactattttttggcaaaatatcagaagtatgaataaaatggcttattaatgaaagttctaactcatgtatg<br>tggcttagcaaaatagaagccactaaatcacttgaattttaagggacaattctgtggagaaagatataatattttttctgcaatatgcataacctattca<br>aatataaccatgattaatctaaaaaggcttaaaggccttctaatagaagatgattatttatggtttatatgagaaaaatcatcatttataaaatattcta<br>aattctagaagaca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C21orf99:NR:026916:3/12	
0	chr22	15414649	15414954	1001215	0	-	pAlu22-15409101; RIP_Alu_chr22_015_01	NA	NA	SINE	Alu	Sx	atgcccagtcttggaattgctggcgcaaatggtggagcagtttagattcaggaggtacatgtacaggtttcttacatgggtacgatgtgtgatgctgagg<br>tctagggtatgagtgatcccatcacccaggtagtgagcataataccccacagttggttttttcaactcttgtccttctaccttcctctctccccctaact<br>agaacacagtatctgttcccttctctgtgtctacgtatacacaacatttagctcccacttataagtgagaacacacagcattctgttaatttacttaaga<br>taatggcctccacactgttcacaatagcaaagatgtggaaccaacccaaatgctcatcagtgatagactggataaagaaaatgt<font color="green"><u>AGCACATAGACACTGT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTCTAGGAGGCTGAGGTGGGTGGATCACCTGAGGTCAGAAGTTCAAGACCAGCCTGGCCAGCA<br>TGGCGAAACCCCGTCTCTACTAAAAATACAAAAACTGGCCGGGCATGGTCGTGCATGGCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGC<br>TCCAACCCAGGAGACAGAGATTGCAGTGAGCCAAGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGTAAGACTCGGTCTCAAAAAAACAAAACAAAC<br>AAACAA</font><font color="green"><u>AGCACATAGACACTGT</u></font>ggaatactatgcagccatgaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccctcatgtt<br>cagcaaattgacacaggaacataaaaccaaacactgcatgttctcattcataagtgggaagtgaacaatgagaacacatcgacccagagaggggaacatc<br>acacactggggcctgttgcaggggtgggggactgggggagggacagcattatgagaaatacctaatgtagatgacgggttgatgggtgcagcaaaccgct<br>atggcacatgtatatctatgtaacaaccctgcacattctgcacatataccccagaacttaaagtagaatagaaaaaataaaaaataataaaaataattaa<br>aaaaga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr22	41235917	41236212	1001216	0	-	pAlu22-41136811; RIP_Alu_chr22_041_02	NA	NA	SINE	Alu	Yb3a1	tctctcttggatcaaaatatccgtggactgctctggaaagtgaggagttgggggttgttggggttcatcttagaaccgcctcccagcggtgcccccatcc<br>tgccctgggttcaggcctctgaggagaaaccaaagcctgggctaccccaactcccacagctgggtcccttgaccctgggttggatttgaggctcagttaa<br>tctcagctcacgctcagctggcacaagccaggcgcaagcaagtgctgaaggcacagccttgctggggcgcagggagttcaggacttggtcacagtcagcc<br>ctgaacagcagagctgggatctgaacaggcgctggagcccacacttgctctgagagagaatttatgtcttcacaatcctcccattga<font color="green"><u>AAGTCTACAATCC<br></u></font><font color="red">TGGCCGGGTATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACGAGGTCAGGAGATGAGACCATCCTGGCTAACATGG<br>TGAAACCCTGTCTGTACTAAAAATACAAAAATTAGCCGGGCTTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGACCTTGCAGTGAGCTGAGATTGCACCACTACACTCCAGCCTGGGCGACAGAGCCAGACTCCATCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGT<br>CTACAATCC</u></font>cgtggtttttaatacattgagttgtgagaccatcgtcacaattacattttcatcacccccaaagaaatcgcaaacctctgagcttacacac<br>acacacacacaccccacccccccacccccaacaggcttccggtcctgagcaaccatgacctggctttgtctctgccgtgtgtcctatttggacttgaacg<br>tgaatgcagccatacaacacgtagacggttgtgtctgacttcatccacttagtgcgatgttttcaaggctcatccatgctggagcccatgtcagtgcttc<br>gtttctttttatggcttaaaaatcgtctatggtgggccacgcacggtggctctcgcctgtaatcccaacactgggaggccgaggcaggcggatcat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SERHL:NM:170694:8/11	
0	chr2	20530160	20530453	1001217	0	+	pAlu2-20634265; RIP_Alu_chr2_020_01	NA	NA	SINE	Alu	Ya4b	ggcagtgtcctaggggaggaccagctgctgaatggagacttggctgttcctgtctcactctgcaggtctttttcccaagggactgagaaatagatgcctg<br>aactggcttgacagtgccaaatgccaagttctgaggtgtctgggccagaggttgggtctgtggcctggtgatctccaggcctggggaggttgcactctgg<br>cagtccatggtagaaggtgaggtcaagtcactcacatgctcaccttgtttggaagcatcaagtctgatttcagagctcaggctgaaaacaagcatctaga<br>acggatccctgaaccggcttctgactcatcctcttcaaattacgctaagatttgtcaggcccctccttcatctttaggccaagtgtt<font color="green"><u>AAAATGCCATGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAATG<br>CCATGTG</u></font>agtccaaggaggtgggctcgagctgcgtctgcctttgcttcctggagggcggaggactagcccagcagatcctggtggtgcagaaattggaga<br>gcttggggccactgaaaaagggttcaggccccaatgaaaggacatttttggctccttgtcaaggacagacaggctgcagatctacacacgggatttgatc<br>cagcccccatctagatccctgtgccctggcaattagtctggttcctgctacctgtcatcagtcctaccacctgcctgggtgtgtgtagtgggtgcagggt<br>gctaggatttcatgtgtacactgggtaggcaggtttgtggtgggagcagcaggatgggctcagagctcagcactgagggaatgtgtgtgctctt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	43512487	43512798	1001218	0	-	pAlu2-43616594; RIP_Alu_chr2_043_01	NA	NA	SINE	Alu	Ya5	ggatattaatccaggagaaatgaaaacgtgtccttaaaaagtcttatattagaattttatagcagctttattcataatagtaaaaaaaaaaaaaaggtaa<br>agaacccatgcctgtcaagaggagaattaataaacaaacttacagattcatataatggaatactactcaacagaaaaagaaccagactattgatatattg<br>aataacatggataaatttcataaactctgtgctgagtgaaaaaagcaagccaaaaaaacgtattattgctgggcacagtggctcacgcctgtaatcccag<br>aactttgggaggctgaggtgggcggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctccaataa<font color="green"><u>AAGTACAAAAAATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGCGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCATTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGTACAAAAAATT</u></font>atccgggcgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgc<br>gaggcggagcttgcagtgagccgagatcccgccactgcattccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaa<br>aaaaaaaaaaaaagtacaaaaaattatccgggcgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccagg<br>agatggaggttgcagtgagccgagatcgcaccactgcactccagcctgggcaacagagtgagactccgtctcaaaaaaacaaacaaacaaaaatgtatta<br>ttacatttatat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:THADA:NM:022065:26/38	
0	chr2	49466403	49466709	1001219	0	-	pAlu2-49570505; RIP_Alu_chr2_049_01	NA	NA	SINE	Alu	Ya5	gaatcaacctaagtgtctattaatgggtgaatggataaagaaaacatggtatatatacacagtggaatactgttcatccataaaaagaatgaaattctgt<br>catttttgacaatgtggatgaatatggagtacaccatgttaagcgaaaaaagccagacacagaaagacaaatactgcatgatctcacttatatgtagaat<br>ctagaaaagaagaaaaaagaaaaagttgatatcatagaaacagatagtagaacagtggttaccagaggtggggaagagaggggagagaggaagacaggga<br>aagctggttcaacagctacaaagttataattagattggaggaataatttctagtgttttacttcacagtagggttgctatggtt<font color="green"><u>AAGAGTAAAAATATTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAGTAAAAATATTG</u></font>tatattaaaaaatagctaaaagagaggcttctgaaggttctcaccacaaataaataaataatgcatgaagtgataaa<br>tacacaaactaccctgattcgattattacacaacataggtatgtattgaaacatcaagaacaacaaacatatcttataaatatgtaaaattacaatgtgt<br>caaacaaatcaatatttttttataaaaaggctaatgactgcattggaatgaacaagcaagaaaatagtaggagatgatatctcagcagtgggtaggacct<br>acatcaactagatcatataggatcttgagggtcatagaagtaatttgtattctattctatttacaatgaaaaatcatttaaggtttttaagcagaggagg<br>gtcatga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	82193970	82194276	1001220	0	-	pAlu2-82298076; RIP_Alu_chr2_082_01	NA	NA	SINE	Alu	Ya5	aaggtggattctgtttttcatctagttaaattcccagtgttactccctactggtgtttccactctgaagctcacataattatagtgaacatgaattcctt<br>cttattggaagaatttaactcttttatcttattatgtgaaacaaagcttagtaagagaaaaaataaggcagtatatcctaacagatatatcaagcgtaaa<br>ctccccaaaagagtgccggggggaaaaagcactattaatcaagcaaagctaatagtgttagattttctgcagaaatgagaataccatctcaacaaactct<br>tagtagtgtctcaaaagtgaaaaaattagaggaagattttaataggcagaacagacaatagtttatggggctcagagaatagttaaa<font color="green"><u>AACTGTTAAAATA<br></u></font><font color="red">GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGGTGAAACCCCGT<br>CTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAG<br>GCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AACTGTTAAAATA</u></font>tgattaagaatttcaaaatggtgacagcataacattaagccacctcatggctatacaggtcacatgcactgtgaagccag<br>cctgttaacagagttttagggcctgagctgagaatttttaatgtagtttgtgaaagtagaaaactggctaggattaagcacaatgtatatcatgatattt<br>ctggattagtggacagagtaatctgaggatcttgaagtgagctttgatgaacaatctattagtgttgaaaagtaaggtgttttacttggtttccagcctg<br>aacttcctggatcaaaattgctacattaagtacctatgttatttttgcttgttttcagtattatttagcatagaaggaggaaagtattcctggccacaga<br>attacta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	85372630	85372953	1001221	0	-	pAlu2-85476742; RIP_Alu_chr2_085_02	NA	NA	SINE	Alu	Ya4	ctgtggttccagctacttgggaggctgaggtgggaggatcacttgagcccaggaggtggaggttgaagtgagccaagattgtgccactgcactccagcct<br>gggtgacagagcaagaccctgtcttaaaaaacaaaaagagagaaatagctaacttaagacataaagtctacaaaaatattttttgagaaatacagaaaag<br>tataaagaatgataccacacccaaaacctgccatgtgggattgtttttatagcttttaaattttgttctttttttcttaaataaaacatcacagaaagtt<br>aaatcctcttaaacactccaccagtcttatgctcctccccacttcccaaaggcagctaccattgaaatgttcccattctcccttaaa<font color="green"><u>AATACATATGACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATACATATGACC</u></font>agtaaactcagcactttgggaggctgagacagaaggatcacttgagcctgggaggtcaagacc<br>agcttgggccatatagtggaaccccatctctacaacaaataataaaaatagctggatgtggtggtgcacacctgtagtcctagctacttgggaggctgag<br>gagggaggaatgcttgagtttaggctgcagtgagctatgatcatgccactgcactacagcctaggtgacagagtgagatcctgtctctcaacaaagcaca<br>aaaaaccaaaatccgggaggctgagacaggagaatctcttgaacccaggaggtggaggttgcagtgagctgagatcatgtgccattgcactcctgcttgg<br>gtgacaagagtgaaactccgtcct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TCF7L1:NM:031283:4/12	
0	chr2	91053270	91053577	1001222	0	-	pAlu2-91157380; RIP_Alu_chr2_091_01	NA	NA	SINE	Alu	Yd2	cactaggtcaggagtttgagaacagtctgaccaagtggtaaaaccctgtctctactaaaaatacaaaaattagctgggcatagtggtgcgcacctgtaat<br>cccagctactcaggaggctgaggtaggagaattacttcgaccccgggaggctgaagttgcagtgagccgaaatcgcaccactgtactacagcctgggcga<br>cagagtgagaatccgtctcaaaagaaaaaaaaaagggtggtggggctttaataaattaagtggtacattttaaatattttaattgtttattagatattac<br>gtatgcagataaacctgtttaaatatagaagatttatattcctatttacatatatccttttgacaaattagaattgaaaataatataaa<font color="green"><u>AATAAATTTTC<br></u></font><font color="red">AGCTGGGCACGGTGGCTCACGCCTGTAATCCCAGCATTTTGGGAGGCCGGGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCACGGTAAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCTGGGTGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAAGAGAATGGCGTGAACCCGGGAAG<br>CGGAGCTTGCAGTGAGTTGAGATGGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAAAAAAATAAATATATAAAATAAAAAATTA<br>AATAAAAA</font><font color="green"><u>AATAAATTTTC</u></font>tttctgtcatgcagacttaaatagtaaaatatcttccttctattatttttatcttttttgtttatgatggttaggaagtga<br>atatctaattttctatactgtgaaaaatacacataaagtatcatggaagttcaacattcattttccttgaaaataattccaaagttttcttctccagaaa<br>tatatcctgttatcattaagtttagttgtactgataaatggcagttgatgatttgtaagtttttaaacatatttattcataacacttatttttttttctt<br>tttgagacggagtctcactctgttgcccaggctggagtgcagtggtgtggtctcggctcactgcaacctccacctcctgggttcaagcagttctctgctt<br>cagcctct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	101341647	101341968	1001223	0	+	pAlu2-101579686; RIP_Alu_chr2_101_01	NA	NA	SINE	Alu	Ya5	caatcagtccccaaggtttatggattctttatcccaatatctgattataaacttttaaatatcatgctgggacattttctcaaaagcttgccttgggggt<br>aaaaaaatactaccacatgggaaaaaaaagagcctgttgcatagaattgtttatgatggcaaaaattggaagtaaccaaaaagcttagcagtggggaaat<br>acaaataaattaagttttatcaatactataacatacagcctttaaaatagatgagatagagctataggtgtccatgacaaagatataagtaaaactgtta<br>caagcagtgaatctgtatggatctgtagcaacctcaattcctgcctcctcagaagaaagaattcagctgaggggggcataaggcagagt<font color="green"><u>GAGAACTGAGG<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAGA</font><font color="green"><u>GAGAACTGAGG</u></font>caagttttagagcaggagtgagagtttattaaaaagttttagggcaggaatgaaaggaagtaaagta<br>cacttggaagagggggccaagcgggcaacttgagagatcaagtgcatgctttgacctttgacctagggttttatatgttggcacacttctggggccttgc<br>atcccttctctctgattcttcccttggggtgggctgtctgcatgtgcagtggcctgccagctcttggaggtgagcatgcacagtgcatttatgggacttg<br>tacacatgctcacttgagatgttcttcctttaccagtcaagtcttcgtataaggtcacataccagttaaactccgccagttttcgtcttggtgcacacat<br>gtgagcccacttacccggctcc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CREG2:NM:153836:2/4	
0	chr2	101464286	101464597	1001224	0	-	pAlu2-101702325; RIP_Alu_chr2_101_02	NA	NA	SINE	Alu	Yc1	cacgcccagctaattttttgtgtttttagtagagaaggggcttcactatgttggccaggctagtctcgagctcctgacctcaggcggtccacccgcctca<br>gcctcccaaagtgctgggattacaggcgtgaaccaccatgcccagctcagcttgctttcttttagttctcacagctacactctgcaggaggcactttaca<br>atccaggaaacggcccctcagaggtcccccaggcagaacggttaaatccgtggccctatgtgctctgtcactcattggctacacaaccttgtgcaaactc<br>acttcaagtgtcttcaattccctgcaagtctccttttcctccctgtgaaatgagtccactctactggattcacgaactcacgcat<font color="green"><u>AAGATCTTAAGCAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGATCTTAAGCAGG</u></font>tactgattggttcttctgcatatgctgggtactagggctggaggggtctaagttttggtctgatcttagactt<br>agcccactgtcacggactcagtcaggcctctgagatcatgcctagtctcctcaggtaaacatgacttatctctcagtttattttcttctctggctttctc<br>caagatggccccagggtctatggggaagaggggtggctcacctggtgggaggatgctgtaactcatggctcaagccagagcattcttcacagtgggaaag<br>agagctagcagcagcagctaaaagtggcaggcaggccccacccatacgggtccctcctcatcgcaggaccatggactctaaggcagtgcccttgtcctct<br>gggtgctagtca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	113332532	113332838	1001225	0	+	pAlu2-113522775; RIP_Alu_chr2_113_02	NA	NA	SINE	Alu	Yg6	ttcaatgctatccccatcaagctaccattgactttcttcacagaattagaaaaaactaatagccaagacaatcctaagcaaaaagaacaaagctggaggc<br>attgtgctacctgacttcaaactatactacaaggctgcagtaaccaaaacagcatggtactggtaccaaaacagatatatagaccaaaagaacagaacag<br>aggcctcagatataacaccacacatctacaaccatctgatctttgacaaacctaacaaaaataagcaatggggaaaataattccctatttaataaatgat<br>gttgggaaaactggttagccatatgctgaaaactgaaactggaccccttccttacaacttatacaaaaatcaactcaagatggattaaa<font color="green"><u>GATTTAAACAT<br></u></font><font color="red">GGCTGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGATGGGTGGATCATGAGGTCAGGAGATGGAGACCATCCTGACTAACACAG<br>TGAAACCCTGTCTCTACTAAAAAATACAAAAAATTAGCTGGGCATGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGATG<br>TGAAACCAGGAGGTGGAGCTTGCAGGGAGTGGAGATCACGCCACTGCACTCCAGCCTGGGCAACAGAGTAAGACTCCATCTCAAAAAAAAAAAAAAAAAA<br>AAAGAAG</font><font color="green"><u>GATTTAAACAT</u></font>aagacctaaaaccataaaaaccatagaagaaaacctaggcaataccattcaggacataggcatgagcaaagacttcatgatt<br>agaacaccaaaagcaattgcaacaaaagccaattgacaaatgggatctaattaaactgaagagcttctgcacagcaaaagaaactattgtcagagtgaac<br>aggcaacctacagaataggagaaaattttttcaatctatccatctgacaaagggctaatatccagaatctacaaggaatttaaacaaatttgcaagaaaa<br>aaaaacccatcaaaaagtgggcaaaagatatgaacagacacatctcagaagaagacatttatgtggccaacaaacatgaaaaaaagctcatcatcactgg<br>tcattag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	117609534	117609859	1001226	0	+	pAlu2-117799777; RIP_Alu_chr2_117_01	NA	NA	SINE	Alu	Yb7	tacagaagcgtgtacaccatttcaaggttacagaaataatgcgggttggattctgctaacacaggttatgggattgggaaaaagagaaattctattgagg<br>ggcaataaatgattgctggggagaatgattggatcttggaacagagattaacctgttagtagtttctttggaatttaaatgctccttggagatgtctatg<br>aaaagagttgaactctaaaatatgtgaagagatttattctgagccaaatatgagtgaccatggcctgtgatacagccctcaggaagtcctgagaacatgt<br>gcccaaggtggtcagggcacaggttagttttatacattttagagaccatgagacatcaatcaaatacattaaagaaatacattgatt<font color="green"><u>AAGAAATACATCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAATAAAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATACATCC</u></font>atcaaatacatttaagaaacacattgatttagaaaagcagaacaactcaaactggaggggc<br>tttcaggctacaggtgaatttaagtattttctggttgacaattggttgattttgtctaaagacctgatatcaatagaacgggaatgttcaggttaaggta<br>aagattgtagagaccacagttcttttgaagtcttatagtggctgcccttacagaagataggtgacaaatgtttcctattcagatcttacctgtttaggat<br>tgggagggtctggaagaaaaagatctagttatgttagtggacatcctttacagatgtaaattttccccccacaaagaacagctttgcagggccatttcaa<br>aatatggcaaataaacatattttggg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	128587743	128588039	1001227	0	+	pAlu2-128776108; RIP_Alu_chr2_128_01	NA	NA	SINE	Alu	Yf1	tgcctagcatgactttagaacataagctaataatctccctctttataaaaaaatctagttatttgaatcccttttttgacaaatccagtagtttcattga<br>gtctattatttgcacatatgatgtgctttgcttggctttctgaagaaatataaaacatgctaaaaaagtagctcgataaagtttacattttatttcaaaa<br>tgaaccatgtaaataatcttttctgattttaatatggtcatcatactatggaactgattgttgaattcagtttcctttccaaccttttttcttctgtttt<br>ctctttgccacctttttatttggtggaagggggaggattttctaaacaggcgattcataggtagacttgatgtaatattaagctttt<font color="green"><u>AAGACTCTGTGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>ACTCTGTGTA</u></font>atatttagtcatttaaaatatttatatgtaaaggttgttagccctttaaagtttctatgtcataataagctcagtactaagttcatgcaa<br>aaaaaataaaattttatttattgatttatttatttttgagacagagtctcgctctgtcgcccaggctggagcacagtggcgcgatttcagctcactgcaa<br>cctccgcctcctgagttcaagtgactctcctgcctcagcctcccgagtagctgggattacaggcactcaccatcatgccggctaattttttgtattttta<br>gtagagagggggtttcaccatgttggccaggctggtctcaaattcctgacctcaggtgatctgaccgcctcagcctcccaaagtgctgggattacag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:UGCGL1:NM:001025777:6/41	
0	chr2	158427347	158427642	1001228	0	+	pAlu2-158683025; RIP_Alu_chr2_158_01	NA	NA	SINE	Alu	Ya5	atatacgttaactacaaatatgaaagtgtactatgtttcatgtttatgtttatggaactgtactacagaactgtacataatttatatgaaaggaattata<br>ctatgttttgagtgtcctgcttttttcatgtaatattttgtgtactctctatagtcattcattcattgcaacaatttctgtgtgcctcctatgcataaga<br>cagcatactaggcacaggataaacatatacacatacacacacacacacacacacacacacacacacacacagagtacaaaacagacataccttgtattta<br>ctaatatatatataaggtagtatctgtaagatacggaaaataattaaggctcaaactagatggaatagccaacaaaagcctcttt<font color="green"><u>GAAAAGGTAACTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>GAAA<br>AGGTAACTACT</u></font>tttaaaatgagatctgtctctgaaaattcatcaaaaatagtatttttagtgattacataaaattccattctatgaatatatataaacct<br>aaccgctgctgtagaacatttacttttttttttttttttttttttttttttttgagacagtctcactctgtcacccaggctggaatgcggtggtgcgatc<br>tcggctcactgcaacctccatctcccaggtactcctgcctcagcctcccaagtagctgggattacaggtgtgcaccaccatacttggctaatttttatat<br>ttttagtagtgatgaggtttcaccatgatggccaggttggtctcgaattcctgacctcaggtgatctggcctcctctgcctcccaaagggttggga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ACVR1:NM:001105:1/11	
0	chr2	181634083	181634394	1001229	0	-	pAlu2-181889756; RIP_Alu_chr2_181_01	NA	NA	SINE	Alu	Yb7	tgacttatcaaatatttagaagtaagtcaacttaaaaaaaaaaaaaaggtcacataacgaaacaaaatgtgtgaaatttcaggtctaaacatcactttat<br>caagtcagctacccaagtttctgaagttcacatgtggcaggcattttttaaagttatgaattatacacaaatgattttatctgaggttatataatcataa<br>tctagttcaattctcattggctatcattttaatatccattactactacactttatataactaattaattaaaaaaggaagggagaacaagaagccttcta<br>ttattaaagtagttgcctaaaagcatacagcagcatggaaggagcaggaaaaggaggcactggtttcagacacattgctttactcttgtt<font color="green"><u>AGAAGTGGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AGAAGTGGTC</u></font>tgtgcacctaaatacttttaaaagtagagattccattaatgatggtgacaaaataattatagagtggtatgccattaa<br>caaattaaatgaaggtattgagaaacttttggcctagtctacttcaaatggcattggtaatttcctcacaaactgttttatggggatctttctatgaata<br>acatttacctctcaatctacatttaaagctaactaaaaaaaaaaaaaaaaaaaaaaaaaaagcactcgtttttgtagtcttattgtacatgttaataaag<br>atttgcttaccagggttgcagtctgtcaaaagggaacaaatagacagcaaaacctttgaaatagtcaaagcgggactccagttgtctttaaggatgtcca<br>gacagatgactc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:UBE2E3:NM:006357:5/6	
0	chr2	182273501	182273813	1001230	0	-	pAlu2-182529181; RIP_Alu_chr2_182_02	NA	NA	SINE	Alu	Yc1	ggtccacttgtcacctggatgtgcacacaaccatcaaacttagcataaacagtctttagcccaacaaatttctcattaaccttgctctactcccagactt<br>ccctgtaccacttacctaattgcttaaatcagaaaccagagaaaacccttgactactcatttaacccaatatcaaatagttatgtgcagttacaagttat<br>ggacaactcaatttacagtagcttaaatgttgttgttttctttttctcacataagtaggttcaaggcagattgctgtggtgttgattcaataacctaaaa<br>atgtccagcaatatttctacaattcgtgtggtattccctgatggaattgagaaagaactgcatctccttcatgttcaaaagaaac<font color="green"><u>AGAAGTAGAAAGAAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGGCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AGAAGTAGAAAGAAG</u></font>cagtcttgtgagtctcttttacaaggaaacagcttttcctgaagagcctcctagtagacttctctttacagt<br>tcactgtgcagaataggccggatcactaccccagctataagggagactgagaaaacagggaacaggattgttataattgaactattccaaacaagatcca<br>tttattcaagatgaacacattggctcctcagaaagccagagttcctttagcaggaaaaaagtgaaaatacatattgactaaataacttgaaatatctgca<br>acaaatccccgcccccacctttctgccaaccaaatatcaagttgggtcttatcctttaaatatcttgaaaatatgtctattccttcaccactgcccccat<br>tttaatgtaaact	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	192267659	192267976	1001231	0	+	pAlu2-192523336; RIP_Alu_chr2_192_01	NA	NA	SINE	Alu	Ya5	ctctccctaaccaccacacaaacagtaaaaaaccatgggtgaattctattaagaatggagaaaattttccaaaaatggctcaaagtccagaagcattaaa<br>ggaaagattgatcaatttgactacatttacatgttaaaaaataaaatgacaactgggaaaaacatttgtaacatcacaaagggctaatattcctaacata<br>aaaagaacttgtataaatagagaagacaaaacacactatggaaaagtgggcaaaagatatggacagttcacagaaaaaaagttcaaatggcccttaagta<br>tataaaaagatgctcaacttcactcataatgaaagatgtaaattaaaataccaccaagataacattcttcacttttagattggaaaaaat<font color="green"><u>ATGAAAGTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>ATGAAAGTTT</u></font>gaaaacacacttgcttggccaggtgtggtggctcatgcctgtaatcccagcgctttgagaggccaaggtggg<br>tggatcacctgaggtcaggcattcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaatttactgggcataatggtgcgca<br>cctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccgagattgcacctctgcactccaacc<br>tgggcgacgagagtgtaactctgtctcaaaaaagaaaatattctcttggtaacactattggaataggaacattcactgatggaggaaatgcaaaactgta<br>taatctctgttatagggg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	192270451	192270774	1001232	0	+	pAlu2-192526128; RIP_Alu_chr2_192_02	NA	NA	SINE	Alu	Ya4	taaaaacacagtataaaagtcaaaaaatggtacacttgcaagggcacttaccaggaatggagcttagaggttggaagttgctctgtatgagtcagtgagt<br>gagtggtgagtgaatgtggaggcctaggaaattattctacactactgtagaatttatgaacatttgggctacactaaatttataaaaaacattttcttct<br>tcaataatgagttagctcactgtaacttactttttaaactttttaaatgttttttaagtttttaactcttgtaataacacttagcttaaaacacacattg<br>tacagctgtacaaaaatattttctttatgtcattctataagctttttaaaatattttcaaatgtatttttttttttaaagcttaaaaaa<font color="green"><u>AACATGTAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACATGTAAGA</u></font>cacccacatattagcctagacctacacagggtcaggatcattaatatcagtgtcttccatctcca<br>catcttgtcccactggaaggtcttgaggggcaataacatgtatggagctgtcatttcctatgataacaatgccttctggaaggcttcctgaaggacctgc<br>ctgaggctctttttgaggcagtgtcactcttttcagaaatatgtccatggtggtttactcaatttgcttcttttttattcatagatttgcatatgtaatg<br>cattgcgctataccattaagacagctatgatgtcactgcagttacagtgtcactaggtgatagaaattgtccagctccattacaaccttatggaaccact<br>ggtgcatacgtggttcattgtggt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	195739566	195739859	1001233	0	-	pAlu2-195995238; RIP_Alu_chr2_195_02	NA	NA	SINE	Alu	Ye5	gtttcatctacattaaacatctgttgtttagtgcagccatcttcatcaatgatcttagtgaggtcttctagacaatttgctgcagcttctacatcagcac<br>ttgctccttcaccttgcatttttatgttatggaggtgacctctttccttaactcttatgagccaacctctattagctttcaacttttcttctgcagcttc<br>ctcatcattctcagccttcatagaattaaaaagagttggggtcttgctctggagtaggctttggctttggggaaggttgtgattggtttgatctatccag<br>gccatgaacatttcatcatatcagcagtacggctgttttgctttcttatcatctgtgtgttaactggactggcacttttaatatccttc<font color="green"><u>AAAAACTTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAC<br>TTTTC</u></font>ctttgcttttgcaacttggctatttgtcctatttgtcacaaaaggcctagctgtcagcctgtcttggcttttgacatgccttcctcactaggttt<br>aatcattctggcttctgatttaaagtgagaaatgtgagattcttccattcacttgaacacatacaggccattttagggttattaattagcctaatgtcaa<br>tacagttgtttctcaggaaatagggtggcctgagaagagaaaaagagatggggaaatgtctggttggtggagcagtcaaaacacacacaacatttactga<br>ttccattggctttcttatatgggtgtgctttgtgtcaccccaaaacaattataataataacatcaaagatcactgatcaaagattaccataaca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	208769414	208769722	1001234	0	-	pAlu2-209025091; RIP_Alu_chr2_208_02	NA	NA	SINE	Alu	Ya5	aaaaatattaaaataataaaaaaaaagaaaatatgatgtttatacttcaggagcttactatcaaaataggagattccaaagaaattcactagtagaacac<br>tttaaaagggctggataaatacaatgaagaaagaggcaaacactactttataatagtaataactaccatttgcaaaagacttattataatgttccaagcc<br>aacattatatatatgatatttctaatatttaggagaacccataaggtagattttcattaacaacactttacagaagagagaaataaagtgcagaagtaac<br>ttacccaaaatcacatagttatcattctattaacttaccatgtactactgctacttttcagtaatttaaatataaattttggtgaagat<font color="green"><u>GAAAAATTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>GAAAAATTCCT</u></font>atcaatattctgtggaagtggcaatgttctgtgacatttccacaatatcaaggtaatatatatgtagatataatattgta<br>agaattttaaagactttgaaagggacattgaagtctgatgaagatgcagtacttgggaagtcagaattgcagaaatggtctttctctggctaggtattcc<br>tcctctgtcccatctgtataaaacatggatattatttttatatctgcctcaaggatacgctatgagaactgagaatttcctaactatggcataaaagtgt<br>tctttgctgttgtgttatttgttttgattttaatgtcttgagaataaaaggtataagaagacgtgaatttcccccaaagctaaagcagcctagctggagg<br>gccctcgtt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	212259505	212259787	1001235	0	-	pAlu2-212515181; RIP_Alu_chr2_212_01	NA	NA	SINE	Alu	Yb7	ttcttctgcctcagcctcccaagtaactgggactacaggcgcccaccaccacgcctggctaactttttgtacttttttttttttaagtagagatggggtt<br>tcaccatgttagcccaggatggtctcgatctcctgacctcgtgatccacccaccttggcctcccaaagtgctgggattacaggcatgagccaccacgccc<br>agcccagtattgggttttaacccaactcttgtggtcttgggcagcttacactctctgtgactctgcccacctataaaatccatgatcattcctgtttttc<br>atgatggctttgaatattagtattcataaatgaagaaagaataccccctccaaaaagaaataaaactaaaggccaatgtatctcta<font color="green"><u>AAGAATCTAGAGGC<br></u></font><font color="red">TTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTA<br>GCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGAT<br>TGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATCTAGAGGC</u></font>aaa<br>actccttagcaaagtagtagcaaatagcagtcagcaatatatacaaagaattatacaacataaccaaatgagtttattccagggatatacgattggcaca<br>atatttgataatcaaaaatgtaatatattaacagcccaaggaagaaaaaattcattatcatgtcaattgatacagaaaaagcatttgaaaattttaacac<br>ttgtttctgtttaaaaatctcagaaaaaaatagaaattcagagtaagtttctccccttcatgaagaccatctacaaaaatcctacagctaacattatgct<br>taatggtgaaaagctgaaggcttttgcactagattgggaacaagaaaagaaagacctctcttatcactcatttaacatagtat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ERBB4:NM:005235:12/28	
0	chr2	235759423	235759739	1001236	0	+	pAlu2-236110861; RIP_Alu_chr2_235_01	NA	NA	SINE	Alu	Yb7	cggaagtgaagtacagaaatagtgggactgattattgctcagcatttgtcttatttgaacacagtttgaacactcagcagtctatgagtggttgaagcat<br>ggccgctgtgattggccaatactcagctattgttacaggtgcatactactaagttaggtcttcaatgttgtcggcagggacacaacaaaaaaagaaaatt<br>gcaggccaatatccctgatgaacatcgatgtgaaaattctcaataaaatactggcaaaccgaatccagcagcacatcaaaaagctaatccaccacaatca<br>aattgtcttcatccctgggatgcaaggctggttcaacatatgcaaatcaataaatgtaatccatcacgtaaacagaaccactgacaaa<font color="green"><u>AACCACATGATT<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AACCACATGATT</u></font>atctcaataggtgcagaaaaggccttcgacaaaattcaacacctcttcatgctaaaaactctcaataaact<br>aggtattgatggagcatatctcaaaataataagagctatttatgacaaacccacagccaatatcatactgaatggacaaaagctggaagcattccctttg<br>aaaaccggcacaagacaaggatgccctgtctcaccactcctattcaacatagtatttgacgttctggccagggcaatcaggcaagagaaggaaataaagc<br>gtattcaaataggaagagaggaagtcaaattgtctctgtttgcagatgacatgattgtatatttagaaaatcccatcgtctcagcccaaaatctccttaa<br>gctgataagcaacttca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	9876689	9877024	1001237	0	-	pAlu2-9964070; RIP_Alu_chr2_009_01	NA	NA	SINE	Alu	Yb7	cagcgttgctgctgaggaggcctggggacccatggccgcaccgaggtatggtcaggcctggttctgacatcactcagttccccagctctgtgccccagcc<br>acccaacggatgacaccttgccgagtgtggcggctcccggggttgctcctgtggaacagggactccgagcagaaaattctctgaaggcaggaaccaccta<br>ggggtcttgggtcctgaaaggcgaacatcctctttcgccacctccaggaagcccttttcaatatttctcacacttgggaggctaaggcaggaggatagct<br>tgagcccaggaggactgaggctacagtgagctataatgacgccactgcactccagcctgggtgccagagcgagaccttgtctcttt<font color="green"><u>AAAAAAAAAAACTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTCGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AACAAAAAAAAAACAAAACAAAACAAAAAAAAAAAC</font><font color="green"><u>AAAAAAAAAAACTGG</u></font>gggaggggaggcgggcgggacatgtaatttggacatagaaacacacagg<br>aaaatgccatgtgaagataaacacagatgtgggggatgctttctgttttcccctatggttgatgtttattcaatttatttgttttggtttttctctgttt<br>tagggatcacccctccccatacaatctgactgaattttacttactgaataagtaacacattaacaatgttacaaaagtttgttgaaacgatgcaaaaaag<br>gtatactcagggaaatatccttctgtcccctttcccttctattccattccctcccacctctgtaggtaattaatttcattagtttctagtttatctttct<br>tgtgtttctttttgcaaaaataaacagatttgtatat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	5126642	5126955	1001238	0	+	pAlu2-5214005; RIP_Alu_chr2_005_02	NA	NA	SINE	Alu	Yg6	cagtgtggtattggcagagagataaacacataaatcgattgaacagaacagaaaatccagaaattgaccaaaataaatatgaccaactgttttttgttga<br>aagtgctaaggcaatgcatttataaatgaataccctttttaacaaatggtgctggagcagtttaatatttagagttaaaaaaaataattttgacctaaac<br>ttcacacctcatataataattaactcaaagtagatcttgtacttaaatataaaatgtaacctgatgaaacttttagataaaacataagaggaaacctcag<br>agattgacagctgggcaatacgttcttagacttgacaccaaaacaaataatctacagaaggacaaagtagtaaattagacttcatcaa<font color="green"><u>AATGAAAATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AATGAAAATCTT</u></font>tggctctgtagaaaaccccattaacaggattaaaaaggcaagcaatagactaggagaaaacacttgtaaactac<br>atagctgttaagaatgagtatctagaatagatgaaatctcaaagcttaatagtaaaagtacaaatattccaattacgaagtgggccaaaagacatgaaga<br>gacatttcaccaaagaggattgtgtaaacgctcaataaacacgtgaaataaaaacatgttcaggatcactggctgttagtgcacttgtgcctccataata<br>gcacccaccattgactggcagcttaaacagcagacatttattttctcacagttctggggctggaagcccaagatcaagcaggactgaattctcctgaggt<br>atctctcttgggct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	87193227	87193538	1001239	0	+	pAlu2-87297329; RIP_Alu_chr2_087_02	NA	NA	SINE	Alu	Yb7	gcattaaaacctgaaatataagaaaccagatttatcaaaatatgtgcaagatatttacattaaaaactacacaatattgctcatagatattaaagaagac<br>caaagtaaatagagaccatgctccttggttgaaacagaatattcttaatattccaattctccccaaaatgatctatagagctaaggcaatcccaatcaaa<br>atctaagctggctttaaaatagaaactgaaaagccattaagaagttcttgtgagtgtggctggttggtctagggctatgattctcacttagggtgcaaaa<br>ggtcctgggttcaaatcccagaggagcccaacttttagttcaaaagttcttgtgaaaacaaaaataatctagccaaaaatattcttgaaagagg<font color="green"><u>AAGAAA<br></u></font><font color="red">TTTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACA<br>AGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAAA</u></font>gaggaagaaatttgaagatatacacagtctgcagccagacacaaaaaaattacatattggatttttcctttttatgaaatgt<br>ccagaaaagagaaatatataaagaatacataggcctgtgatttcctggtctgggagtagaaaggatactgactgtaaataggcattaaggtatttgttta<br>aagtgaagaaagtactctaaaactggattgtagttatcattgtgtaacaaatatttgtgaaaacaattgagctgtttgcttataaaaggtgaattttata<br>gtatttacattatacatttataaaactttttaaagtatttttaataaagctgtgtcattaaaaagaccaataatctgccattcctaacatgtttagtaaa<br>aaaacatgaaac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	203426045	203426337	1001240	0	+	pAlu2-203681722; RIP_Alu_chr2_203_01	NA	NA	SINE	Alu	Yb3a1	aaaaaaaaaaaaaaaaaaaagtgtacctatttctccacatcctctccagcacctattgttttctgactttttaatgatcaccattctaactggtgtgaga<br>tggtatctcattgtggttttcatttgcatttctctgatggccagtgatgaaaatgctcatcatcactggccatcagagaaatgcatatgaccaatggaac<br>agaacagagccctcagaaataataccacacatctacaaccatctgatcgttgacaaacctgacaagaaatggggaaaggagtccctatttaataaatggt<br>gctggtaaaactggctagccatatatagaaagctgaaaccagaacccttccttacaccttatacaaaaattaattcaagattgatca<font color="green"><u>AAGACTTAAATGT<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACATGA<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTAGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAACGGCGTG<br>AACCCAGGAGGCGGAGCTTGCAGTGAGCCGGGACTGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTT<br>AAATGT</u></font>tagacctaaaaccataaaaaccctagaagaaaacctaggccataccattcaggacataggcatgggcaaggacttcatgtctaaaacagcaaaa<br>gcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagggcttctgcacagcaaaagaaactaccatcagagtgaacaggcaaccta<br>cagaatgggagaaaatttttgcaatctactcatctgacaaagggctaatatccagaatctgcaaagaactcaaacaaatttacaagaaaaaaaaacccca<br>tcaaaaagtgggcaaagaatatgaacacacactgctcaaaagaagacatttatgcagccaacagacacgtgaaagaaaagaattttcaaccca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ICA1L:NM:178231:3/5	
0	chr2	204271926	204272225	1001241	0	+	pAlu2-204527603; RIP_Alu_chr2_204_01	NA	NA	SINE	Alu	Y	ctccgggacacagttaagcagagttaagagggaagtttatagcactaaatacccatatcagaaagcaggaaagatctgaaattgacaccctaacatcaaa<br>agtaaagtaaatagagaagcaagagcaaacaaattcaaaagctagcagaagacaataaataactaagatcagagcagaactgaaggagatagagacatga<br>aaagcccttcagaaattcagtgaatccaggagctggtgttttgaaaagattaacaaaatagatagaccactagccagactaataaagaagaaaagagaga<br>agaatcaaatagacacaataaaaaatgatgaaggggatatcaccactgatcccacagaaatacaaactaccatcagaaaatactat<font color="green"><u>AAACACCTCTATGC<br></u></font><font color="red">GGCCGGGTGCAGTGGCTCACGCCTGTAATCTCAGCACTTTAGGAGGCCAAGGCGGGCGGATCATGAGGTCAGGAGGTTGAGACCATCCTGGCTAACATGG<br>TGAAACTCCATCTCTATTAAAAACACAAAAAATTAGCCGGGCATGGTGGCAGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCTGGGAGGCGGAGTTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAGAAAAAAAAAACCA<br></font><font color="green"><u>AAACACCTCTATGC</u></font>aaataaactagaaaatctagaagaaatggataaattcctggacacatacaccctcccaagactaaaccatggagaagtcaaatctc<br>tgaatagaccaataacaagttctgaaatggaggcagtaattaataccctatcaaccagaaaaagcccaggaccagacagagtcacagctgaattctacca<br>gaggtacaaagaggagctggtaccatttcttctgaaactattccaaaaattagaaaaagagggattcctccctaactcattttatgaggccagcatcatc<br>ctgataccaaactctggcagagacacaacaaaaaaagaaaatttcaggcgaatatccttgatgaacattgatgccaaaatcctcaataaaatactggcaa<br>	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	208667366	208667698	1001242	0	-	pAlu2-208923058; RIP_Alu_chr2_208_03	NA	NA	SINE	Alu	Yb7	cacctctacaaaaataaataaatatatacattttttaagtgctcactatgtgtttctgtggctgttgttatatctattgtattgtattctacattgtata<br>ttttattattgtctagttaatatattattatccttttcatcagttagaattgagtttttatttagattcaaagcaccacaaatacccactgcaatcttaa<br>aaacaacaattcatatccctggttttgatacccatagttgtaagaaaagcaagagaaaaccggctgggtagagcggctcacacctgtaatcctagaactt<br>tggaatgccgaagcaggagtattgcttgagggcaggagctcaaggccagcctgggcaacatgttgagactctatctctacaatctttaaa<font color="green"><u>AAGTTAACTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGCCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTTAACTGGGC</u></font>ggcggccaggcctgtggctcacacctgtaatcccagcactttgggaggccaagg<br>tgggcagatcaggaggtcagcagatcaagaccatcctggctaaaacggggaaacccagtctctactaaaaatacaaaaaattagccaggtgtggtggcgg<br>gcacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaattcaggaggcggagcttgcagtgagctgagatggcgccactgcactcca<br>gcctgggcgacagagcgagactctgtctcaaaaaaaaaaaaaaaaaaagttaaccgggcatggtgttgagtgcctgtaatcccacctactcaggaggctg<br>aggcaggaagatcacttgagcacagggggtggaggt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	3848218	3848533	1001243	0	+	pAlu3-3864962; RIP_Alu_chr3_003_01	NA	NA	SINE	Alu	Yb7	aactggcagcctctcagttcacttgataaatgggccggagtaacacaccccaacgaggaatgtgttgcctccaagatccaaataggcccactaggcattc<br>tgcctctttcttggttgtaggaggggccaaatacagcaacttatccttcaccttaggagtatctcaccaggccccacaccactggacccctaaaaatttt<br>actgagggggaagattcctgaattttagtcagatttatttctcatcctctggcacgcaaatgtctcaccaataagtccattgtgtttgctacttcttgct<br>cagtggatccaatcagcatactgtcatcaacgtaatggaccattgtgatattttgcggaagcaaaaatgattaaggtctctctgaat<font color="green"><u>AAGACTATGACAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTATGACAC</u></font>aaagctggagagttgatatacccctggggtaggacagtaaaggtatattgctgtccttgccagctgatggc<br>aaattgcttctgatgggccttatggacagaaatggagaaaaaggcatttgccatgtcaatggctgcataccaggtaccaggagacgtgttaatttgctca<br>agcaatgaaaccacatctgctgcaattggagtcacgacttagttaagctcatgataatctgctgtcattctccaagatgcatctgtcttctgcacaggcc<br>aaatgggagagttgaatggggttgtggtaggaatcactacccctccgtctttcaagtccttggtggtggcactaatctctgcaattgctccaggatgcaa<br>tattgtttttgattta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LRRN1:NM:020873:1/2	
0	chr3	18730835	18731131	1001244	0	-	pAlu3-18606299; RIP_Alu_chr3_018_01	NA	NA	SINE	Alu	Ya5	tgtaagctgtgacctaagaaagggaaggatctagctatgcaaagtctggttacaagtagaggaaagaacagagtaaaagtccgtaggatgggaaggagct<br>tggtgtgttcctgtaactaataagagctggagcataagtgaggcaatatggacaggagttagatcatactgggtcttgtaggctgtggttagatatttgt<br>attttaccccgaacacaatgggaagtcattgtaagcttttagcaagaaataaaattatctaatttcaattttttaaagaaaatcactttgccaatgtcta<br>gagaaggaattggtatggaaagagtcaaatcagagatattagctgggaggctgttgtggtattctggggagagaagatggtctgaaat<font color="green"><u>AAGAAGGTGACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>AAGGTGACA</u></font>gcagagatcagtataaaattttggatcagatgcatatgtttggaggcagaatcaatgacttgaatttggtaagttgggggaaaagaggaat<br>catggacaattgctagatttctggcttaagtaattgaatgaatagttgaaacttttactgaaatggagaagtggaaaccaggtatggtagtaaaagttca<br>agagttctatttgggacatgttcagttggtaacgttagtatgtcatcaaataggcaaggcttccactcaagctgtgaaagtacctcaagacttgtaacaa<br>accaatttacaaatatttcaagtaaaactaatattaaacattccatgactcttggagtccagaaatattatgttggtttttctctgttttttttctt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	21432513	21432825	1001245	0	-	pAlu3-21307204; RIP_Alu_chr3_021_01	NA	NA	SINE	Alu	Yb7	atcagttatgcgctcttgtcattgttacaggaattatttaaactgagtcctaacagtgaaagttttacctgacttttgctgatttttttttctttctaca<br>tggggagatttatctctggagcatctcttgtgtttttgtatggtttgcttcagtagctagagaggctactatcaggaagtgaaatggatcatttctaatg<br>gtaggtctccattgcctacatggtatttctgagagtggtatcagggtgtccagtgaaagacggataggttgacatgtcatgctcatttggcctaaaggtt<br>gttactgccaggaatggacttacaacttaccagaatgtgaatggtgacaaaaggcaggttctactctggaaaaatatgtgttattttatt<font color="green"><u>AGAAGTTCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AGAAGTTCAT</u></font>gcaggtcatgaagagtcacagagtttaaagaattctctggttgggtcatcaatgttcagatgtcaagggactgaaca<br>ttaccttcaatttgagggtcttctctttcctcttctcagtgatggaaactcatccttcctaggtggctaagttgactgtagaaactgctaaaatgtattt<br>gtcaaacgaagtaaaatctgactattaatatatatgatcaggtagagtatcttagagtttggttaactaagacagccgataatggggtcatgttattttc<br>agactggcaggtcatctctaaaggcaatttttaaagattagggctaaaatgatttgtgagcaaagaagtataattaaaaataagtaatagtatagtgacg<br>agttctaaggtta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	26761724	26762030	1001246	0	+	pAlu3-26636419; RIP_Alu_chr3_026_01	NA	NA	SINE	Alu	Y	tctgtgaatggataaggctaggagttgggcaggtggtgaacgctgggatgcctagtgcccaactgcaaagaaaaagaaggcttttccctgcccagaatca<br>ccttctcaggaaagccttcagtagctcttaaaggcagaactcactttagctttttatctatttgcactggggcactgtgttctcctgtatccctagctcc<br>aatgttaggcagggtcagggtagtaagtggcaattttgtgtctggacctaatgtatatggtggctcttgctacatagtgaaaatagtaattcctactttc<br>ctttctttaacagcagtctatattgagcacactgtatggcctcctcgctgtagtgagaagaaaacaatggccagcttaaaagcaata<font color="green"><u>AAGAAGGGACCGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAAGGGACCGG</u></font>agcaggaagtaaaaagggagagtctgttctgtttagaaaagcacataaattctttgtagattctggatattagccctttg<br>tcagatgagtagattgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagtttcttttgctgtgtagaagctctttagtttaatta<br>gatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtattgcctaggtt<br>ttcttctagggtttttatggttttaggtctaacatttacatctttaatccatcttgaattattttttgtataatgtgtaaggaagggatccagtttcagc<br>tttctac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	61450101	61450411	1001247	0	-	pAlu3-61329867; RIP_Alu_chr3_061_01	NA	NA	SINE	Alu	Ya4	gaactgtggctgggcacagtagctcatgcccgtaatcccagcactttgggaggccaaggcgggtagaacacctgaggtcaggagtttgagaccagcctgg<br>ccaacatggtgaaacgctgtctctaattaaaaaaaaaaaaaaattagccggatgtggtggtgggtgcctataatcctagctacctgggaggctgaggcag<br>gagaattgcttgagcccaggaggcagaggttgcagtgagctgagacggcgctactgcactccagcctgggcaagagagtgagactccgtatataaaaaaa<br>aaaaaaaaaggaatgtgcacatgtgcactgtgtttggtctcattctcataatacgcttgaattgttccatggacttgatttttttaaa<font color="green"><u>AACATGTAAGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AACATGTAAGCT</u></font>taaacaacatttaatttttacattagaaaagtgataagaatttatcaaatgataataatgttgatggagtactgaga<br>gagtttttaataaaaactcaagctcctctttaacctcattcctagtatctaattaccaggtccatccagaagaacagagcaatgcctacagcaatttcaa<br>cggttctcctgaaacatatggcacatctcacagttatatctatggagtaaatcctcttgcaacagattcaaaaggatcacaccccaagcacagtgcatgg<br>cacacagtagtggcccatgcatattggttaaatgactaaaagactgtacagtcacacctggttttattaatgttgaaatactttggcaggagatgggccc<br>aaaagctgtta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	81990198	81990502	1001248	0	+	pAlu3-81713027; RIP_Alu_chr3_081_02	NA	NA	SINE	Alu	Ya5	acaatgcctcatgctttaatcatgaggttagtgtattaaagcaatggttgatttttggctcctcccatatactgtatgacatgatatgctaatatattca<br>gaaacctaggaatagtttcatttattgctagtggtaatggccaataatcaaggcataacttcataataagaaattcactttcagaatgaaaacacatcta<br>aaataagaagttttaaattttctaattgttgtcctctcctgcagatgatagttaaactattttgtcagctatgatttataagtacagtactcattatgtt<br>cctattcctttatattttactatattctttttacctttctcaaatgggacatttcctcaagataatgtatataattattctcatt<font color="green"><u>AAAAACTGGTAAACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAACTGGTAAACC</u></font>tagagaaaatactctgtattttattacttagcaagtctttaccaaacaggtgatttttgaaaacatttaatactcttgta<br>ataattaaagcctttttgtttcattccaataacatttcttaacatttctctccaggtgagtacattttgtgtttttaagctaaaaaaatgcaacacggcc<br>tgccatatatcatatttgttattaaatggctcaaaattttaattatatttttatgttggaatgcaagcatgtattgcagaaatctgaggtcacttttaaa<br>gttcaagagacttttcagaatggtaaaatgaatataaactttaaaagaaatgtcaatgttattcgatacaattactgttaaaaatgaaatagttaaggat<br>aacat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	111702115	111702409	1001249	0	-	pAlu3-111500551; RIP_Alu_chr3_111_01	NA	NA	SINE	Alu	Y	gaacatgtggtgttcaggtttctgttcctgtgttaatttgctgaaaatgatggttttcagcttcatccatgtccctgcaaaggtcatgaacttattattt<br>tttatggctgcatagtattttgtggtgtatatgtgccacattttctttatccagtctatcactgatgggcctttcagttggtttcaaatctttcctattg<br>tgaatagtcctgcaataaacatacatgtgtatgtgtctttagagtagaaaaatttataatcctttgggtatatacccactaatgggattgctggctcaaa<br>tggtgtttctagttctagatccttgaggaatcaccacattgtcttctgcaatggttgaactaatttacactcccaccaacagtgtaa<font color="green"><u>AAGCATTCCTATT<br></u></font><font color="red">GGCCAGGCGTGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCATGAGGTCAAGAGATCAAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTCTACTAAATATACAAAAAATTAGCTGGGCTTTTTGGTGGGTGCCTGTAGTCCCAGATACTTGGGAAGCTGAGGCAGGAGGATGGTGT<br>GAACCTGGGAGGTGGAGCTTGCAGTGAGCTGAGATCGCACCACTGCACTCCAGCCTGGGCGATAGAGCGAGACTCCATCTCAAAAGAAAAAAAAA</font><font color="green"><u>AAGCA<br>TTCCTATT</u></font>tctccacatcatctccagcatctgttgtttcctgactttttaatgaccaccattcaagctggcatgagaacgtatctcattgtggttttgat<br>ttgcatttctctaatgattggtgatgatgagctttttttcatatgtttcttggctgcataaatgtcttctttggaaaagtgtctgttcatattctttgcc<br>cactttttgatggggttgtttgtttatttcttgtaaatttgtttaagttccttgtagattctggatattcacccttagtcagagggatagactgcaaaaa<br>tgttctcccattatgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaatt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	115949174	115949481	1001250	0	+	pAlu3-115747612; RIP_Alu_chr3_115_02	NA	NA	SINE	Alu	Ye5	tgggattaacagaaagggtggaaatagccaaatgtattcatatttttggccaggcgcagtggcttatgcctgtagtcccagcactttgagaggctgaggc<br>aggcagatcacctaaggtcaggagctcgagaccagcctggccaacatggtgaaaccctctctctactaaaaatataaaaaattagccaggcatggtggta<br>cacacctgtaatcccagttcgggaggctgaggcaggagaattgcttgaacccaggagatggaggttgcagtgagcaaagactgagccactacactccagc<br>ctgggtgacagagcaagattctgtctcaataaaataaaataaaatgacgttcatatttttaaaatacagcaatattcatttgttt<font color="green"><u>AAAAAACAAGATTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAAACCAAGATTGAGA</u></font>agagcacagttatatagtgacttttgatacatacacaataaaacttattgaattttcaaaaagtgagaaaaaaa<br>ctactctgctttaaatttaaagtaataaataataatgaagacatatcaacattggtaactgtcagagtgagaaaaggaaattgaacattcaatgtgacca<br>gaggaagggtgaacatgggagatactgcccaggaaaagtgctcatgatgagtaattcaaagacccagaatcttaacataaattttttatagttttctttt<br>caagggactatttgaaaaaagatggttctggggtttttgttgtagcttctttctttctttctttctttctttctttctttctttctttctttctttcttt<br>cttctttcttt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ZBTB20:NM:015642:4/10	
0	chr3	127841629	127841939	1001251	0	-	pAlu3-127640448; RIP_Alu_chr3_127_01	NA	NA	SINE	Alu	Y	tagaaaagagaggaaaggatagggaagtgggggcaagaaatgacagagggttgagcaaagactgaagtctggttgaagggtagttgaaggcataaaattg<br>accagatatggtggccagttggatgtagacacttggctgtgtatcagaatgtcttgtggactttaagaaaaattacaaaccacttgtctctttgtgcaga<br>gattttgatctggtagatgtgggcagtgtacgtgcacatttaaagcatcatagatgatcctggttctgaccgtagccaggtgattatgacagggcatcca<br>ggtcatggtaggatatggattgagggagaggaaagaatacaggaagagagactgggggggaaatggaatactgttcactgagat<font color="green"><u>AGAAAACACAAGCAGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AGAAAACACAAGCAGC</u></font>tttggtttattggcagggtggggttgagttcaggataatgggttgatgctggacacatttctccagtcaactc<br>aatggagagccttaggtcaagctaggatcagctggttgtagataaaatgaggcctcctgacttggcagtgtaattttggggtagttttatttgctttcaa<br>gaatccttcttctggttgggcgtagtgactcacacctataatcccagcactttgggaggctgaggtagaaggattgttcaagcccaggagattgagacca<br>gcctgggcaacatagtgagactctgtctctacaaaaaatagaaaaattactctacaaaaaatagaaaaattaggcaggcatggtggcatgcacctgtagt<br>cctagctactc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	131395386	131395689	1001252	0	+	pAlu3-131194206; RIP_Alu_chr3_131_01	NA	NA	SINE	Alu	Ya5	tgttagataggatgttaagttgtctggctaggaggctgtctgtctcgctggctttgaagatgtgagctgccatgtcatgagcggccagatggagaggccc<br>atttggcaaaaagctgagggcatcaacaaactggggccctgagtccagcagcctgcaaggaactgaatgctgccaacaaccagatgagcctggaagcaga<br>tcaatcaccagtcaagcctccagatgagaactgagccctggctgacactatggttgcagccttgcactgaacccagctgagtcacgcctggattcctgac<br>ccacagaaaccatgcagtgataactgtctgctgtctcaagccacaaagtttgcagtaatattgttgcacagcaatagataactaatat<font color="green"><u>AAAAACTGTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCGGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGGGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAACTGTCCT</u></font>acatcatgtacattactgagcgaaatgtagaacctggatttgagctctgatttcagaggtgtggtctcagtctccccagggaga<br>cctgtcctgggagacagttatgccaggctgtgatgctgtgttgattgttctcttcctacccagaagctttcaataggcatgtcaagcatgtgaccctagc<br>tacatataccaaatgtatttctgacaaatgccaggacatcgtgagctttcttgttttactgagagctccataaaggaatgactatctttttctttttttt<br>tttttaaagagtctcactgtcacccaggctggagtgcaatggtgctatctcagctcactgcagtctctgcctcctgggctcaagggattctccagcctca<br>gcct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	377929	377930	1001253	0	+	pAlu3-133142108; RIP_Alu_chr3_000_02	NA	NA	SINE	Alu	Ya5	gttttttgttcttgcgatagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagt<br>attccatggtgtatatgtgccacattttcttaatccagtctatcatagatggacatttgggttggttccaagtctttgctattgtgaataatgccgcaaa<br>aaacatacgtgtgcaggtgtctttatagcagcatgatttatctttgacaaacctgagaaaaacaagcaatggggaaaggaatccctatttaataaatggt<br>gctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacaccttatacaaaaatcaattcaagatggatta<font color="green"><u>AAGACTTAAACGT<br></u></font><font color="red">GGCCGGACACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTTAAACGT</u></font>tagacctaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaa<br>ggacttcatgtctaaaacaccagaagcaatggcaacaaaagacaaaattgacaaatgggatctaattaaaccaaagagcttctgcacagcaaaggaaact<br>accatcagagtgaacaggcaacctacaaaatgggagaaaatttttgcaacctactcatctgacaaagggctaatatccagaatctacaatgaactcaaac<br>aaatttacaagaaattgtactttcaaaaatgtattgaattgggatacttctataattcaaaacagacaccataatattctgctgttttctgtttgtattc<br>gtatgactaggacataga	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CHL1:NM:006614:12/28	
0	chr3	186500038	186500347	1001254	0	-	pAlu3-186419268; RIP_Alu_chr3_186_01	NA	NA	SINE	Alu	Yb7	ataagccgagatcgtgccactgcactctagcctgggcaacagagtgaaactctgtctgaaaaaaaaaaaaaaaaaagaaaagaaggaaatcctatcatat<br>gctacaacacagatgaactctgaggacactgtgttaagtgaaacgaaccagccacaaaaagaaaaatattgcatgattccacttatgtgaagtatcaaaa<br>atagtcaaactcttagaaatgggaagtagaatggtgctactagtagaatggggaagagagaaaaggtgagttattcaaggggtacagagtttcagttttg<br>caagatgaagaagttctagagatctgtttcacaacaatatatataccgttaacactactgtactgtatctttaaaaattgttttaaa<font color="green"><u>AAGAGAGAGAGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAGAGAGAGAG</u></font>agaaaacagacagacatacagagaagatagcaatatgaagatggggtcatcgactgaaatgttgttacacagcacat<br>tgctgtacttcattctggcagccctaggaaagtaacacaagggcccacagaagaaagcttgcaagtgagtgcaggctccttttgtgactggggcttcccg<br>ttattctgaaatgttacattagcccacattcagcctttaagaattcattacagttttagctgctttcttcttacctacctttacggtgccttctcttcct<br>cctatgctctgccaaaggtaacacagtttctgtgtcctgtctctcttcaaaagggcttgcctctctttggaatttcagttcatctgattgccttgtgacc<br>tcaactctct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	192152502	192152815	1001255	0	+	pAlu3-192071734; RIP_Alu_chr3_192_01	NA	NA	SINE	Alu	Yc1	acacactggattgaataaatgacagataccacagaataatatgttagtaattatgcagatttagtaattgaaattatccaaaataaaacacagagaataa<br>ttttttttaagtaaacagtgaactggtgacctgggggaaaatttcaagtggtctaacatacatattattggactccctaaaaggtggggcagaaatgagt<br>atttgcaaacacaatggtaaataattgccaaatttgatggaaactgtaaccccacagaaccaagatgctcagtgaacttcgatcacagaaaacattaagg<br>aaattacatcaagacatttaataatcaactcatttaaaaccagataacgatgttttaaaagtagttgaactgcaggaaatcacattgtata<font color="green"><u>AAGAGTGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTGTA</u></font>aagaggaagacaggtgagaatgtcagcaacataaagttgaaaacaatttcagaagaaagaggaacaacatctttaaa<br>atactgaaaggaaaatactgtaaattaagaattctctacctagcaaaaatacctttaaaaaattaaagttacagaaattctttttagacataaaaaccca<br>aaagaagatatcactggcagaaatgcagtacaagaaatacaaggagactacttcaggatatatatacacacacacacacacacacacacacacacacaca<br>cacaccagttgggaatacaaagaatcaaaatcaaaatggtaactcttggctaaatgtaatattttttatttaaaatacgttggggtgatcagacccaaca<br>ccaggtcgtggggg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	10372476	10372805	1001256	0	+	pAlu3-10389221; RIP_Alu_chr3_010_01	NA	NA	SINE	Alu	Yc1	ggtgagccaacaggagagagcgtggcccatgtggatgccctgactgaaggaagtgagggaagatgggagggtaagtcttccagtcaactatcgctctctc<br>tggggacgtcagagcttgggagggacccaaggggcacctgggctgacctcccatttcatagctgagaacactgaggctcagagagggaagtggctcgtta<br>gcggcaaagtcggggttgggggttggctccaggcccccctttcccagagtctgtgcctgcagctaacttctctggatgaccatgctgtcaacagaaaatg<br>ccaggaacccagctctgccccctcaggccctgggcatggggagctctcatccttgtcctcgtctgctcatcctcttgactt<font color="green"><u>AGAACTACTTGTCCTTTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAACTACTTGTCCTTTCC</u></font>tttgtgcgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggca<br>accaggcaaaggccctgaggcagggaggcagaaaacctgttctaatctgggttcactcagccactttgggcacatcactgtccccctttgggcttcggtg<br>ttttcttctggaaattggggtttgtgcgggaaggtgtttggactagatcagtcactcaaacctcaagtcatgccctgttagtgacgtgaaatttgtttag<br>tgggtggtgaccaacattttaaaaaagaaacaaagaaatagaagaacagaaaataggtaagtgcatcccattattttgtgaaattcttgctttggtgaaa<br>tgtgtgtgtttactgagtcatgacataaaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ATP2B2:NM:001683:11/20	
0	chr3	32178879	32179147	1001257	0	-	pAlu3-32050375; RIP_Alu_chr3_032_01	NA	NA	SINE	Alu	Yb9	gcgtggtggctcatgcctgtaatccagcactttgggaagccaaggtgggcagattgcttgaggccaggagttcgagaccagcctgggcaacgtggtaaaa<br>accagtctctactaaaaatgcaaaaattagctgggtataggggcacacgcctgtaatcccagctactggagaggctgaggcaagagaattacttaaacat<br>gggaggcggagattgcagtgctgagattgcaccattgcactccagcctgggtgacagagtgagacccaggagcttgcaacatgcacctcagagaacatgt<br>tgtgtacgggctgaattgtgccctcctcccaattaatatgcttaggtcctaacccctagtatctcagaatgtgacacggtctttgaa<font color="green"><u>AAGGTAATTAAGG<br></u></font><font color="red">GCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCTTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAG<br>ATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAGAA</font><font color="green"><u>AAGGTAATTAAGG</u></font>taaaatgagaggcaaaga<br>aaagttccattcaagaaaagacggtaccatagggagtaagaggatgtactgcaggaagttacattggtgctagattgaggggggccacatctgcctaagg<br>accatgtgcttcactctataagagcaggaggcctctgaatgtgaatgctcaagctggtagggaccatggtgttcatctggtcttccatcttaattttgtg<br>gataagaacaccggggcacagaacagctaaatacgtgacttgcccaaggccacagggctaataagccacagggcagccttgaatgctgccctcctgctat<br>tttttctatagcaatggagaagagaagggagggagaaggaaacagaggaagaccggagtagtggtggtc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GPD1L:NM:015141:7/8	
0	chr3	1476421	1476422	1001258	0	-	pAlu3-132274989; RIP_Alu_chr3_001_02	NA	NA	SINE	Alu	Yb7	tcatgtctaaaacaccaaaagcaatgacaacaaaagccaaaactgacaaatgggatctaattaagctaaagagcttctgcacagaaaaagaaaccaccat<br>cagagtgaacaggcaacctacagaatgggagaagatatttgtaatctaccctctgaccaagggctaatatccagaatctacaaacaccttaaacaaattt<br>acaagaaaaaatcaaacgaccccatcaaaaagtgggcgaaggatatgaacagacacttttcaaaacaagacatttatgcagccaacagacacatgaaaaa<br>atgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaaa<font color="green"><u>AAGTCAGGAAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTCAGGAAAC</u></font>aacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttc<br>aaccattgtggaagtcagtgtggcgattcctcagggatctagaactggaaataccatttgacccagccatcccattactgggtatatacccaaaggacta<br>taaatcatgctgctataaagacacatgcacacgtatgtttattgcggcgttattcacaatagcaaagacttggaaccaacccaaatgtccaacaacgata<br>gactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgaagagttcatgtcctttgtagggacatggatgaaattgg<br>aaatcatcattctcagta	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	4092136	4092454	1001259	0	-	pAlu4-4033862; RIP_Alu_chr4_004_01	NA	NA	SINE	Alu	Yb7	gacatggtctctggctgtgtcacccaggctggagtgcactggtgcaatcatagctctttgcagcctcgaactcctgggctcaagtgatcctcctgcctca<br>gcctgccatgtagcaggactacagatcctacagatgcacatcaccatgcctagctttttttttttttttttttttttttttttttttttttttttttttt<br>tgtagatagggagtctcactgtgttttcaaggctggcttcaaactcctggcctcaagtaatcctcccacctcagcctcccatagcactgggattacagcc<br>atcacctaccaatccaagccatgagtttggctttggatgtaacaaggttgaggtgttcacgagttgacaaatggaaaaaac<font color="green"><u>AAAAAAGAAGTTGAGTGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGAAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGAAGTTGAGTGTT</u></font>taagactgctgtttgaaggagaagtctagcctcaagacaaaagttcaggactcatcagctga<br>gaaatggcactgaaaattacgtaaatggatgagctcagctagcaaacaagaccagagagagcagaaagtccagagagagcagcactgggctatgcacctg<br>gcctaatgctgccccgctcctcccaatccctgtgttatgctggagagggttcagcctctggtgagtttcaccaaacccccacatctctttcttctgagac<br>cttctctaaaatcccgtcttttatacttagtgaaatgggattctctttttcccatccagcttaagcaaaaacttttgactatgagaagaatgaggatgca<br>tttattatctgttctgcat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	28173399	28173708	1001260	0	+	pAlu4-28252549; RIP_Alu_chr4_028_01	NA	NA	SINE	Alu	Yc1	ttttaaaaagtcatgtgacttattaacaaggcagttcttattttcaacttctggaggagaacataagagaaactgtagtgttagactcactgaccacatg<br>taaaatcaaacatgaggtctagactaagaaacagaaggcactaaagaagtctggtaaagaaaaccaacctagcaaccaaaaatggattcatgaaggtgag<br>tcttcttgttttttattcatctgatatgaaaattagttatttggtcagtcagttatgtaatctttactaattaaatgccaaatgtacagctttttgaaaa<br>ctgctacagattgtggacaagggttatgaggctttccatccaattaacaaattaatgcagtcatctacctaacttgactcttcagt<font color="green"><u>GAAATGAGTAATAC<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAATAA<br>AATAAAAAAA</font><font color="green"><u>GAAATGAGTAATAC</u></font>taagagctagttgactcttgctgttaacttcctgagtaaatcctgaaaaccaataaacaatagtcggttttgcctt<br>tggcaaaaacaaaccaaagattaattaactggcatgatatactggaaacagatactcaagaagcacactgaattccctctgaatgttatagagggattac<br>aaaaattaaatagagtttgaaaatgatttatgtttagacagtgttgcctaaaggcaggaagagctttcctaaaagataaatttccctaaaattctttttg<br>cttctatggattattgccttataaaaacattagcatcctttgtagaacattttctgtttgtactttgccaagaattctaagcaaggttgttaagtctgcc<br>gcatcatttt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	55177194	55177497	1001261	0	+	pAlu4-55332259; RIP_Alu_chr4_055_02	NA	NA	SINE	Alu	Ya8	ttacctaatgttagagctctaataataagttaaagaactgggatttaaaccagttaaatataataatgataataacagtaaacaattcgatcctcagaag<br>tctttgtgtgagctctgagctctgatttccattattaacgccagcctgtctttcgagggttgtgaagattaaatgagatagtgcctgtaagaacttaaca<br>ctgacttgcccaatcaacaagattaatagttgttattaataatagtaactggatccagtattcagaaggctctactgggaggaagtatagggacaaatag<br>caatggagaagtgactgggaggaagaaagaggtaaccggtatagacttccctttggaaaatttcaggtttgaagtttgttttt<font color="green"><u>AAGAAAGCTTATTTACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAAAGCTTATTTACC</u></font>atgactgctatggactgaattgtgtctcccttccctcccccaaatcaacaaattcatagcctgaagccctcatcctcaa<br>tgtgatgatattagaaggcagggcttttgggaggtgatgaggatggagcctttgggattgaattagtgccctaataaaaacagactcaggagagctctct<br>ctctctccctgccatgtgaggatataatgagaaggcaattatctgcaagctgggatgtgggccctcaccagacaccaaatctgttcgcaccttgacattg<br>gacttcccagcctccagaactgtgagaaataaatgtctgttgtttaagccactcattctatggtattttgttgtagcagctcaagctaagacagtggctg<br>caag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	61251837	61252153	1001262	0	-	pAlu4-61506906; RIP_Alu_chr4_061_01	NA	NA	SINE	Alu	Ya5	tactatgggatttagaaatattgtttttcactataagatctttaggttaaactgttttttgtttgtttgtttgtttgttttttgaaatggagtctcactc<br>tgtcaaccaggctggagtgccgtgttgctatctcagctcactgcaaactccccatcctgggttcaagtgattctcctgcctcagcctcccgagtaactgg<br>gattacaggagcctgccaccacgtctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctca<br>ggtgatccacctccctctgcctcccaaagtgctgggattgcaggcgtgagccaccgctcccaatctaggtcaaactgattttttaaa<font color="green"><u>AATGTGTGCTGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AATGTGTGCTGTA</u></font>ttactttaatgaaaagtaaaactttattttaagtgatcaatatttttaatgaattcctaaatattataat<br>ctcataatttcactaaaaaattacttggaagcatatacgtttggtggaaaaaatcagtgaccaaaatatcaatagagaaaatattgaatactagagaaaa<br>actagagactgggtataatagactttcattaattcgaaagaatttgcacattgtagtgcctgaatgtaattcgttatttatacaaagagtgattagtacc<br>agtgatcaagactgagaaaactgaaatgactgatggaaatattaatatttggaacatcattctgcttaatatacttttgcaatacttaaaggaattggaa<br>agggtgaagaatgtgag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	69825463	69825755	1001263	0	+	pAlu4-70040703; RIP_Alu_chr4_069_01	NA	NA	SINE	Alu	Yc1	tttgttccatcacaaaagagtaacagcacagcaggcactactgaaaaaattggtacaaattactaaagagagaaaatcaagtattaacaggaattattgg<br>agtaaattatgtcttttaactgactcagtcactcagtttcttatcaagacaatgtataatatgaagatagctggcctctactaagggtattcatgtaaat<br>atgtgtatgcatgcagcacacgatggttttgaatacggcccaacacaaacttgtaaactttcttaaaacgttgtgatttctcttgctatttttttctcag<br>ctcaccagctatggctagtgttagtgtattttaagtgtagcccaaggcaattcttcttttcccactgtggtccagggaaggc<font color="green"><u>AAAAGATTGGACACTCTT<br></u></font><font color="red">GGCCGGGCGCTGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGTGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAAGAT<br>TG</u></font>gacactcttgttctataggtatattttgtgcttaccatgaggattgtataaaaaattttataataaacattgtgtaataaaaatattttaaaaaataa<br>atacataaataaaatagaaataaaataaaaatatagaattaaattattttacataattaatgaaaaataattataaattataaaaaataaagcataaata<br>aataataaataacattaaaatattttaaaataacagtccattttaaaccaaaaaaacctttaattatatatgaaaactgtatttctttacatctcccatt<br>tctactttatgttagtaatatcactagttatatattttatcttctgtcccaattaatataaatgtaatgttacttttatgcttt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	81521561	81521889	1001264	0	-	pAlu4-81695227; RIP_Alu_chr4_081_01	NA	NA	SINE	Alu	Yb7	ttgcctatggctagcttatttttctcttttaaatctggcatacattttgaacactaacctcaacctcagcttcactccatttcttcaaccttttctttct<br>ctccatcttttaaaatctttttgtcataagatatacacatttcccttgttaattgcctcaaattcttttgtaggaatgcagactatagatagctgataga<br>tagaaggaagatagtagaaggaaaaaggaacaggaggaaggaaatgttttgaaactatttcccagaagcataatcgggcagcagatcataatgaactatg<br>aaggatgttgagactgaacaaccaggtaaggcattgcaacaaaccaagtcaactggtttgactggattagcgatttacaagaattttaaa<font color="green"><u>AATGTATATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATGTATATG</u></font>ttaagagtaattataaataaaagaatcagcaagagtccatttttcattaccaattagaatt<br>ttcatcaaggagattttgaagacactctaaaatataaaatctatagggccaaaaatatggtattatcataataaaaatggcattttggcatgggaaatag<br>aattcagtgaaagaaaaataatgagctatttttaaaggcattttgttattggtttgacaaaaagtaacaataagaagtagatatggagctaaaagcccag<br>aagaacagacatgcttgaacatctgaccaaagttaatagaagacataaaagtgtgtgacatattgaagtagtggaatataaaagaggtgtaaatgagaga<br>aatgtcatttgggagagatccaaattagt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C4orf22:NM:152770:2/6	
0	chr4	87604718	87605008	1001265	0	+	pAlu4-87778373; RIP_Alu_chr4_087_03	NA	NA	SINE	Alu	Ya1	aaacccatttagctgactttgtgggtattctcgataaccattttcttaaaacgaaactgtttccatttttgaaattaactaattggattttccctaaaat<br>aactaatttaaaccaattgaaggtgctaagaatgtttttacagatgggtctagtaatggtaaagcttcttattctggatcaaaaggtaaagttttccaaa<br>tgctctatacttcagcttagctgtaattgaggtattcactgcttttgatatgcctattaatgtgatttctgattcttcacacgtggttcattccacacaa<br>ttaattgaaaatgctcagttatgatttcatacagatgaacaactgatgactttctttactcaattgcaaacagcagttaagagt<font color="green"><u>AGAATGCACCCTTTTT<br></u></font><font color="red">GCTGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTCGGATGCTGAGGCAGGCAGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGC<br>GAAACCCCGTCTCTACTAAAGTACAAAAAATTAGCCAGGCATGGTGGCGGGCACCTCTAGTCCCAGCTCCTCAGGAGGCTGAGGCAGGAGAGTGGCGTGA<br>ACCCAGGAGGTGGCGCTTGCAGTGAGCCGAGATCATACCACTGCACTCCAGGCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAA</font><font color="green"><u>AGAATGCAC<br>CCTTTTT</u></font>acatcactcacattagggctcatacacctcttccgggacttttgactgcagggaatcaaatggctaatcgcctagttgctaatgcaatatcta<br>atgctagacactttcacaatttaacacacgttaatgtctctggtctcaaacacagatacagcattatctggaaagaagctaaagctattatccagcgatg<br>cccaacttgtgaaatggtacattcctcatcttttacaggaggagttaatcctcgaggattggaacctaactctctttggcaaatggatgtcacacatgtt<br>cccttgtttgggagactagcttatgtacatgtatgtgtggacaccttttctcactttgtctggactacatgccaatcaggagagtcttctg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	88251177	88251493	1001266	0	-	pAlu4-88424830; RIP_Alu_chr4_088_01	NA	NA	SINE	Alu	Yc1	acattatttgggtgttgtgatggaaaaaatgttttcataagggattgattaaaaatattttttaggctgggcgcagtggctcacacctgtaatcccagca<br>ctttgggaggccgaggtgggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaatta<br>gccagacttagtggcacgtacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccgagat<br>cacaccactgcactccagtctgggtgacagagtgagactccatctcaataaaaataaataaaaatgaaaataaaatatttttaaa<font color="green"><u>AATAAAGTTTAAGTA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAG<br>GAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAATAAAAAAAAAAA</font><font color="green"><u>AATAAAGTTTAAGTA</u></font>gataaaagtgccaaggttttaagactttcaaatatcctgggaatattttatctttgtttagaggatca<br>aagtttggactttcatttcttcctctgcgtctcctcatcccacccccaatctgccctcccagtgctggtgcaatccaaatactgcaaattggaaatagga<br>aaaaaaggatataattattttttattaggtgttttaataaattggcaaaagttagtatatttgagaatgaattatgattttgaattaagaagttttgagc<br>ttattattatgcacaatatagatttactcttttagtaacactacatagctatggggaatatgagtgcaaaatttttttttaaaaagagcattaaaaaaat<br>ggaagatacacactaat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:AFF1:NM:005935:10/20	
0	chr4	88994674	88994976	1001267	0	-	pAlu4-89168327; RIP_Alu_chr4_089_02	NA	NA	SINE	Alu	Yb7	ctcctagtttcaagcgattctcctgcctcagcctcctaagtagctgggaccgcaggagcatgccaccacgcccggctaatttttgtattttttgtagaca<br>atgggtttcaccatgttgctcaggatggtctcaaacttctggactcaaatgatctgcccatcttggcctcccaaagtgctgggattacagtgtgagtcac<br>cgtgcccagcctgattgcatttttgatcttattgctggtcttgtaggtttaggaaatgctgtagagctcagcatattgatattagcaaagcatttgacaa<br>aattcttttgtgagcatatctaggccagttaataatagagccatagtcattattaaccaaacagctgcacccaaaaagtattgatt<font color="green"><u>AATAGATCAGCATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AATAGATCAGCATC</u></font>aggctacaagggggccaacttcaatatgctgcaggcactgtcctagcctgccctctgccctgttcaaaatttcttcaaactgg<br>tgaatgaacacccaggaagtatttgcatcttaagaactgggagtgatagttaatatttaggatcacaaaatcgagattgaagaaacttcaataaaatagc<br>attgtgaaatagagcattatgcatcctggatcagaaaataaatgatataatactgtacaaagagcagagctggtctaatattgttttttatggagtaagc<br>acatgagcaaacaaaaaccagaaggaagttagtacttatataattagaaattaaataaggagaaagggaaactaatatgaatttagcctgtattttggac<br>caa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	89900497	89900805	1001268	0	+	pAlu4-90074152; RIP_Alu_chr4_090_01	NA	NA	SINE	Alu	Yh9	caattataaacaaaagtgtttatgaaacagtttgctcacaaatgtattccttaagtagcacagatgggtacacaagattttctttaggaatagctagaaa<br>tgtattttggcaaatatactatcattaaatgaaaaaactaagaacatctggaaatcataagtgatttcattaatgtatgagaaacgtttctgtgctgaaa<br>gcactacttaagacttgcagctacttttaatagccacccaaccaacccactttgaaatcatcagggaatagccagggctttttactattatatttccatg<br>aaatgatgcatggagacatattttcttcacatttgggataaaatgaaataccatcaatcgggtcctgatgagctactaaagtcttat<font color="green"><u>AGAAATGCCAAGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AGAAATGCCAAGT</u></font>atatctggagatttaagatagtttaaaaatgcagtttgtttactggggaaaaagccagattaggcatttatgtcacaa<br>aaagtatttttcccttaagctaaagcctaagtggaccagggttaaatgcccaaatctagttctcagctttttaaattacaaagccactcagttaccaatc<br>atgagtgtgcctgggttgcgggggaggggtcgtgggcggggggaagcaaaagagagtaagaatatgcatacagcaaataagcattttctcaaaaagattt<br>ataatgcttattacctttacagacatcaaaaaatactagaaatatgatttcatttttaaagtatggtatttccttcacgaggaacatacatcaagtcatt<br>taagccctc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FAM13A:NM:001015045:7/18	
0	chr4	97791138	97791444	1001269	0	+	pAlu4-97964793; RIP_Alu_chr4_097_01	NA	NA	SINE	Alu	Yb10	ccttttcctctccctatggctttgtgaacacgtctgtccaacactgatatttcttacaagtgtcaggaagagagaaagttattaaataggtaaaaatcgc<br>cctaaatgcctcaaactccttaaatatatgccagttttcctccatacctcatacctactcagtatttattgctttcttttcttatgttcaaaatctttca<br>aatctttattttcctaatttttttgtatcaagttaataaagaagatatactacagtgttttccttcctcatagtacttgcattttcaccattaaatacat<br>tttaagtgataagtgtgatgctcaccagaggtcctgaatttgaaagaaattttccacgttaatgtttttcaattcagtgatgtgagaa<font color="green"><u>AAACAAAATTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAC</font><font color="green"><u>AAACAAAATTTC</u></font>taggacacttgcatgaaaatgtatgtgggtgaggaggagaagggattgtccggatgtaaatatgactccttggacaattat<br>gacacatttgttccactccccactttatgactgaaaaacagtcacctgtctatcaagtcaacttaaatcagtaccatcacccttcattctgttgccagcc<br>acttctgctttcacctactttcagattctgtcccatatcatgaggaacctttgtcagataaagcccaataactagcataggatatgaagttgtgtcaaat<br>aacaggtattagaaaataaggaacatgcttccttatctgataaaatttattcctttaggacaattctggttggtctgagagttgatttcttcccttagac<br>agatagt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	115844058	115844319	1001270	0	-	pAlu4-116017714; RIP_Alu_chr4_115_01	NA	NA	SINE	Alu	Yb9	agaaggtcatgtagttgaaatcatacattatgtagcctttcagattggcttctttcacttagttatatgtatttaaatttcctctgcattaatcaaataa<br>ttttatgtatagaattccaggcttcactaccagaaattatgctttggtaagtttgagataaggccaagaaatgtgcattccagaggattctaatacaaag<br>gtacatttatcagtttttgagaaacactgttctaaatgtcctaataataaacacatgatgctctttcctatagagtcagtcatgctcatggcaatatgcc<br>aaatgcaatcaagcaaaataaatgatgtgttacatttatatataatataatacagtttcagggcataattttctgataatgtggctatt<font color="green"><u>AAGATAGACTT<br></u></font><font color="red">GTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCG<br>CCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAG<br>TCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAACAAAAC</font><font color="green"><u>AAGATAGACTT</u></font>tagagtatctgggtgtggaaactaggg<br>cccaaaggataaaatgagaagggcacatgtgccttgtgtggccagcacagtgttttacaaacaaacaaatcacatttgataaatgcccttgggaattatt<br>catgctcttgatatatattttgtgtgtatatgtatatgtacatgtatttgtatatgtatagaaatatgtatatgtatagaaatacagactaatctacctt<br>tacttgagtgggcccctaaaggcctttgggcttgcaacctcaattatagcaatggttttcagattgttcattgcacagctgggggtcccactaaagacaa<br>catggttcaataggagtccctggggtaaactcttctttaaatccattttatttactggactg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	121627111	121627420	1001271	0	-	pAlu4-121800764; RIP_Alu_chr4_121_01	NA	NA	SINE	Alu	Ya3	agaaaagcaggactcctgtctgttttcttcccattattgaagccttagagcctaataaagtgcctaacaaataattaacactcagcaaatgctgctttga<br>ctgagggcattatggtgttatccaagtacctcttaggataggtagcatggaaatagcgatgcattataacattgcatattctcccaagtttatgcaatct<br>cttaaaccatgccaatacacatattggaaatctggggcaagtataaacgtttaggactctattttcactaacaaatacaccacatatcacaaaggatagc<br>caagaaaactcctctgatgaggagaacaattatgcttttgtacttgctttctctagagcatctctcttaggcatatattatcctttt<font color="green"><u>AAGATTTGTGTGA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGATTTGTGTGA</u></font>attatatttttcctattactcttttccctcctgtttgagttactggatttgagctgtagatgtaagttctttctttg<br>tttccattcctatattggtatatttatcaccaccaagagtttctagttgatttttccaagtttctctgttataagttttatcctgttgtttgtctttcac<br>tggcatttccattgataatttacttttcttctttgatatttaacaagcatttatccttcaacttttaagtttctcaagaatttacttccttgaggagcac<br>aaagcaatgtgtaacatttcaggagcttgagaaatttattttaaatttggtaaaaaacccaacagtaaggttaggtcacactggggagcaagacttttta<br>gatcaaacaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	126086824	126087140	1001272	0	+	pAlu4-126260480; 55248; RIP_Alu_chr4_126_02	GGTCACAAGCATTTCAGACAAGG	GGAAATAGCTGGTGTGAGGAGTGG	SINE	Alu	Ya4	ttgaacatccctaaactgaaaatccaaaattcaaaatgctccaaaatttaaacatttttgtgtggcaacttgatgtcacaagtggaaaattctacagcta<br>agtacataatgcaaactttgtttcttacatattattaaaaggtgtatatgaaatataaattaattttgtgttgagacttgggtctcatccccaagatatt<br>ttattaagtatatgccaatgttctaaaatctgaaatctgaattcttaaacacttctggtcacaagcatttcagacaaggaatactcaacctgtagtagac<br>atttatgtatgctaaaaaataactctacctgcttgcataaaataaaagtgccttagtaatgatactaatatattttaagaaataattt<font color="green"><u>AAGAGATTTTTC<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGATTTTTC</u></font>aagcgatgataatataaatggatacaactctggatgtcctttttaattcccataaaattacataatttaga<br>cttcccataagtacataatttaagatattgatccattttctactccactcctcacaccagctatttcccactgctaaacagaggattttcaagggattga<br>cattttgtttcatagacagccacttagagtaccccacattggtgctcctttatttattccttgtttcataacatcatcatcacatcatagcatatgtgta<br>tgtgcatgtccatgttgtttcacactctcaggttatctctgctgaaattgaaactaggataatggtcacacattgcctttaggaatcttggcagcaaact<br>aaggaagtgaacccgtc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr4	134039064	134039373	1001273	0	+	pAlu4-134212719; RIP_Alu_chr4_134_02	NA	NA	SINE	Alu	Yc1	taaatggtgtttagaaaactggatatctatataaaaaagaataaaattggacatttaccttataccatacacaaaaatcaacacaaaatggatcaaatgc<br>ttaaatataaagcctaaatttgtagaaatattaaaggaaaacagagaaaaacactacacaacactgatttggataactttttaaaatatgaacccataaa<br>cacaggcaacaaaagcaagaatagactaatgggattacatcaaattaaatagcttctgcacagcaaaagaaacaatcaattgagtgaaaagacaacctac<br>atcatacatctgacaaggggtcaatttccaaaatatataaataactcaaacaactgaataatgagaagacaaatgactcagtttaaa<font color="green"><u>AATGGCTGGAGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AATGGCTGGAGGA</u></font>aaagaatacatatttctcaaaagaaggcagtcaaatggtcaacagctataagacaaatgcttcatatcactaatcat<br>caaggaaatgtaaattataaccacaatgagatattaccacacacctgttagaatggcaattatggaaaggaaaagataaatgttggtaaggatgtggaga<br>aaagagagccattgtacattgctggtgggaatgtacagccattcccacatctgtttagccatgtatacaatcattgtggaaaacagtatgaagtttcctc<br>aaaacgttaaaaatcaaactactgtaaaaatctagcaactccacttctgggaagacatccaaagtatattaaatcagtatgtcataaagatatctgcact<br>tccatgttca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	134361068	134361362	1001274	0	-	pAlu4-134534717; RIP_Alu_chr4_134_03	NA	NA	SINE	Alu	Ya5	aagaaactagacatactataaaattcatacgctctactctgttttccccacaacaatctttagtaaatttctaacccacttaataaagaatagtgatttg<br>aaagagcaccaagttagtaatctaaagatggcaattgtatttctcaaatccttgtgcataatggatttcactttataaagtcatgtcacatcagtagtcc<br>tggtaatatataccctgtaatgtttcatgtgtttgggtataagtagtctcttataatgtctgaaaatgtagaaaactgtggtggatacagaatgacaaac<br>aatatcaggagcagatgtacacaggagatttcagcaggctttcttgtccagcacatcattcattagatggcccaagatatttttat<font color="green"><u>AAGAAATGACAGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGCCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAGAA<br>ATGACAGAAG</u></font>gacataaaagttacactgtttaaagtgtttctgagtcaaatgacattgatggtttaagttactgcaatatacagacacaaaaaaagagaa<br>atacattctcagaaaaaaacatttgcctcttaacacccaaagttcaatactgaggaatcattaagtttatcagagatttcttttaacattttaagtgtaa<br>agatcagttactactaatgcctaacttgcttccatgggaaaataaaagcagcattttttacctatctatatattatgaactttattaggctactcacatt<br>ttgctctattttagacttgatttcaaactcaaagaatagtttgtctgccttggagctcacagcagatcgtaaaccagaaaatatgctcaagaaaca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	157221495	157221793	1001275	0	-	pAlu4-157468140; RIP_Alu_chr4_157_01	NA	NA	SINE	Alu	Ye5	gatatactctcaaataagcaacaatatagaattctttactaacagacagccccacgtgctatattaaaagagatttcttccggtagaaataaaaggacac<br>tagaaacagacttaaagacacatgaacaaataaataatattggcaaaggtagtaaaaataaatagcaacaataataatacccatattgtaagtatactac<br>atgaaatttgttatcagttttttttactttataactcttttctatctaaacaaaagacaacttcataaggcaattatcataaaactgtgttgatggactt<br>atataaacgtataatttatgtgacaatactagcacagtgaggggaaacaaatgaagttatatttgagcaaagtattttatactattaa<font color="green"><u>AACTAAATAGGT<br></u></font><font color="red">GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAA<br>AAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGCC<br>TGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>ACTAAATAGGT</u></font>attaatctagattagatcactttaaattaagatgtaaattataatccccagggaaaccactaaaagggtaactcaaaagaatacagtaa<br>aagaaaaacaagaagattataataatacataagaaaatatcaaattaatacaaaaagtgttataataaaaaagggaaaaatgacacaaggcatacagaaa<br>gcaaaatgcaactttaatccgaacttatgagtaattatatgaaccataactgaataaaacaatctaattgaaagacaggcactggaagaatggttaaaat<br>aaaaccgtagctcaactatatattttcaacaaaagacacatatttaattaaaaaaaaacacaaataacttgaaaataaaaggatggaataaagatatgc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	188032706	188033012	1001276	0	-	pAlu4-188380059; RIP_Alu_chr4_188_01	NA	NA	SINE	Alu	Ya5	ctacattattaaaggccattaaatcataacagagaacctttagggctgtgtagaatggatacatttaactgggaataataaaatcattcatttgatttga<br>acaaatgtttaaggtttagaatcaatctgtcattaaaatcctataagcagaccacagtggaaaatgctagttgaagcagggcggaagagcctgaagtctt<br>actcgtatgttcccagatcatccacctccttcacaatcaatatcatccccaccaccaccaaagttaccccaaagagcttatagagcactgttctaaacca<br>tagagcactataagaatgtcctctccataatctctctgggaaaataggacgacttatcctattggcaataaggaggattctccataa<font color="green"><u>AAGATAATTTGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGATAATTTGTTG</u></font>gctggactcacatgaagtaagagaaacctccaggagcctcccaagcccctcaaagtgaaatgaaagtggagcattccat<br>ggtgggtgaagaaaagggcagcagtaatccaagggcagatgtccattccatatctgtggccagcaggctgagccttgggcttgaggaaatgtaggaaagc<br>tgaacacaagactgatgcaactgtggaatgcagcaggggtctaaataatatttagctgagaaaaaagagaaagaaagaagccatacacattgtacatttt<br>gagaatttattttctagaaaagtcagaatgtatcatgtccactgaatctcagcacaattccctctggtatgcacaattctctcccgccaaaagcaatatc<br>gatataag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	81675523	81675701	1001277	0	+	pAlu4-81849177; RIP_Alu_chr4_081_02	NA	NA	SINE	Alu	Ya5a2	aagaatcttcaagcttctaaattctatagagtgtttacttgatttctgaataataaaagtaataaagattaaaagagaactgtcatttcacccttgtatg<br>acagagaggagagactcggagtttagcaatttgtgtgtgtgtgcctattccattaagaagaatcatcttcaatctgggtaggacaaagcacccatcataa<br>aaatataataaaataagtgggaaactagttcccgcttctcagacctagcaacttacctgataggaagttacacagaatgatcattttgttttcagagttc<br>tttagaatgggaaaaataccatgatacctgaaaggggacccttccctcattttcccaatgggaaaaatatttaatttcacact<font color="green"><u>AGAACTGAAGAGCTTCA<br></u></font><font color="red">ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCG<br>AGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAACTGAAGAGCTTCA</u></font>tatc<br>actctctagccatgtttctggatggataaataaacagctgattggtgaacgtttagtggagagaagacattaacattaaaagagaacctagattctcagg<br>tacagaaatctcaaaaaactctcttcctgtttttgataaatttactagcttggcagtcacccatttgctttgtgctttaactgggtatgactgaaccttg<br>ctcatgccttaggcaattaagtaaaaatagcttttgggtttgttaagatcagtatgtgtcaatagcatggtgtaattatttagaagtgtaaagcacaaat<br>tatccttgtatcctcagttggccacctctagagtatagtgctagaatgtgaaaactatattttgtagaaaatacactct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C4orf22:NM:152770:2/6	
0	chr4	137438309	137438310	1001278	0	-	pAlu4-16634501; RIP_Alu_chr4_137_01	NA	NA	SINE	Alu	Yb7	gaacttccccaatctagcaaggcaggccaacgttcagattcaggaaatacagagaacgccacaaagatactcctcgagaagagcaactccaagacacata<br>attgtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcgggttaccctcaaaggaaagcccatcagactaacag<br>cggatctctcggcagaaaccctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaacccagaatttcatatccagc<br>caaactaagcttcataagtgaaggagaaataaaatactttatagacaagcaaatgttgagagattttgtcaccaccaggcctgccctaa<font color="green"><u>AAGAGCTCCTG<br></u></font><font color="red">CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAA<br>ATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGC<br>AGTGAGCCGAGATTGCGCCACTGCAGTCCGCAATCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>GAGCTCCTG</u></font>aaggaagcgctaaacatggaaaggaacaaccggtaccagccgctgcaaaatcatgccaaaatgtaaagaccatcgagactaggaagaaact<br>gcatcaactaacaagcaaaatcaccagctaacatcataatgacaggatcaaattcacacataacaatattaactttaaatataaatggactaaattctgc<br>aattaaaagacacagactggcaagttggataaagagtcaagacccatcagtgtgctgtattcaggaaacccatctcacgtgcagagacacacataggctc<br>aaaataaaaggatggaggaagatttaccaagccaatggaaaacaaaaaaaggcaggggttgcaatcctagtctctgataaaacagactttaaaccaac	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	30814926	30815232	1001279	0	-	pAlu4-30894070; RIP_Alu_chr4_030_01	NA	NA	SINE	Alu	Yb7	atccccatcgcttttttttccagagtgaattagtcatagataatcactaacaaatgcacacctattttattatagaactaaagaaactggtattgtttaa<br>acaatgcctgactgccttcctcctcttgaattagattcccttacaatgtcaaaaacaaatactatgaaaaacaatagtataatttatttctaaactggat<br>tcatgaaagatattaaatagccaagtcattttaaaatgaagcacaccagctgcaaattttacttgataaccattggttgagcggggcgggccaggggtag<br>ggggggaaacactagaaaccataagaagtcataatgattttatttattcatgatcttgtacacacactccctggtctgaaaaagatac<font color="green"><u>AAGAAGCCTTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAGGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAAGCCTTCA</u></font>atttcaggttactgaattagataatttctcagtgtaacttcttcaagaattgagtgctgacagcatataccatggagagac<br>agatccatgatgagaggtctaggtaacagataatgggaggatggccagctaggcaattagagacaggcaaccagaactgtgatgataatcgtctggtggt<br>agaaatcacagcagatggctgaatgtaggaagaatgatcaatcacagcattgtttgtagtaactaaaatttggaaataactaaatgcccaccattagaga<br>aatagataatgagaacatggactattaatggaacaatgatcaaaaatagtatatacagggagagagagacatgcaagtagagagaaattggttttaagga<br>ctaaata	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	46362902	46362903	1001280	0	-	pAlu4-58017031; RIP_Alu_chr4_046_01	NA	NA	SINE	Alu	Y	atctctcagcatttgcttgtctgtaaagtattttatttctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattctttact<br>ttaagaaagttgaatattggcccccactctcttctggcttgtagagtttctgccaagagatcagctgtcagtctgatggggagctcctgaaggaagcact<br>aaacatggaaaggaacaaccggtaccagccactgcaaaaacatgccaaattgtaaagaacatcaaggttaggaagaaactgcatcaactaacgagcaaaa<br>taaccagctaacatcataatgacaggatcaaattcacacataacaatattaacgttaaatgtaaatgggctaaatgctccaattaa<font color="green"><u>AAGACACTGACTGG<br></u></font><font color="red">GTCAGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGATGGGCGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACACAGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTGCTTGGGAGGCTGAGGCAGGAGAATGGCATG<br>AACCTGGGACGTGGAGCTTGCAGTGAGCTGAGATTGGGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAC<br>ACTGACTGG</u></font>caaattggatagtgagtcaagaaccatcagtgtgttgtattcaggatacccatctcacatgcagagacacacataggctcaaaacaaaggg<br>atggaggaagatctaccaagcaaatggaaaacaaaaaaaggcaggggttgcaatcctagtctctgatagaacagactttaaaccaacaaagatcaaaaga<br>gacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactattctaaatatatatgcacccaatacaggagcacccagattca<br>taaagcaagtccttatgagacatgacagcatgctggcagccctcgctcactcttggtgcctccttggcctcggcgcccactctggccatgcttga	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	147678493	147678804	1001281	0	-	pAlu4-147925127; RIP_Alu_chr4_147_01	NA	NA	SINE	Alu	Y	ttatctcatgtcctgagctccctctgtgaaatgtttagtcaactgcctgacctccacctggatttgtaataggcaccttaaagttgtctccagcgaattg<br>gattttgctcactaaatctgctttcccatctcttctatctttgtaaatgatactaactgtgatggttaatactgagtgtcaacttgattggattgaagga<br>tgcaaaatattgatcctgagtgtgtctgtgaagtttgtcctcactggaatagacattctgaatgtgggtttgcctaccctgcacacaatgcttctgccaa<br>gactaccatccatggactcatggaatgctttatccatcgtcatggtattccacacagcattgcctctgaccaaggcactcactttatggcta<font color="green"><u>AAGAAGTG<br></u></font><font color="red">TGGCAGGCTGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCCAA<br>CATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAAGAGAAT<br>GGCGTGAACCCAGCAGGTGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGCGACAGAGCAAGACTCCATCTTAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAAGTG</u></font>ccgtcatggaattcactgaccttaccatgttccccatcatcctgaagcagctgaattgatagaacagtggaatggccttt<br>tgaagtcacaattacaatgccaactaggtgacaatactttgcagggctgggtcaaagttctccagaaggccgatgctctgaatcagcatccaatatatgg<br>tactatttctcccttagacaggattcatgggtccaggaatcaaggggtggaaatggaagtggcaccactgaccatcaaccctcatgatccactagcaaat<br>tttttgcttcctgttcctgcaacattatgttctgctggcctagaagtcttagttccagagggaggaacgctgccaccaggagacacaacaacaattccac<br>taaactggaaat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	151693400	151693701	1001282	0	+	pAlu4-151940026; RIP_Alu_chr4_151_02	NA	NA	SINE	Alu	Ya1	gctcaccatcactggccatcagggaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaa<br>caggtgttggagaggatgtggagaaacaggaacacttttacactgttggtgggagtgtgaactagttcaaccactgtggaagacagggtggtgattcctc<br>aaggatctagaactagaaataccatttgacccagccatcccattactgggtatataaccaaaggattataaatcatgctgatataaagacacatgcacac<br>gtatgtttactgcggcactactcacaatagtaaagacttggaaccaacccaaatgtccatcaatgatagactggattaaaaa<font color="green"><u>AATGTGGCAGCTGGGCAT<br></u></font><font color="red">GGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGATAGCACGGTGAAACCCCG<br>TCTCTACTAAAAATACAAAAAAATAGCCTGGCATGGTGGCAGGCGCCTGTAGTCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGA<br>AACGGAGCTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGGCTCTGTCTCAAAAAAAAAAAGAAAAAAAGAAAAAAAAG<br>AA</font><font color="green"><u>AATGTGGCA</u></font>tatggaatattatgcagtcataaaaaaggatgagttcatgtcatttgtagggacatggatgaagctggaaaccatcattctcagcaaac<br>tatcgcaaggacagaaaaccaaacactgcatgttctcactcataggtgggaattgaacaatgagaacacttggacacagggaggggaacatcacacacca<br>gggcctgtcgtggggtggggggaagggagagggatagcattaggagatatacctaatgtaaatgacgagttactgggtgcagcacaccaacatggcacat<br>gtgtacatatgtaacaaacctgcatgttgtgcacatgtaccctagaacttaaagtacaaaaagaaaaaaaaaataacactccctcacctggca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LRBA:NM:006726:41/58	
0	chr4	44565480	44565656	1001283	0	-	pAlu4-44720539; RIP_Alu_chr4_044_02	NA	NA	SINE	Alu	Yb7	acagaaccttagccctctgaaagcacccagaaatgaagccaatcaactatgtacaacatatatcataggcaaatcctcagagaaaaaagaatataaaaac<br>aaaaagacccattcaaatgacaacaacttcaaaaagataaactctagccctctcagaatagaaagaatcagcacaagaactctagcaattcaaaaaatcg<br>gagtgtttttcttacctccaaaggattgcactagctccccagccatggatcccaaccagattaaaatgtctgaaataacagatgtaaaattcagaatctg<br>gatagcaaggaaattcaacaagattaaagagaaaactgaaaaccaatccaaggaatccagtgcaatgatccaagagttgaaagaaacaaactgaaccaa<font color="green"><u>A<br></u></font><font color="red">TTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGA<br>GATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A</u></font>aagaataaagaaaactctatca<br>tgcaaacaaaaaccaagaagcagcagaggtcattattcttatattagataaaacggactttaaaccaacaacagtaaaaaaagaaaaatacaaagaagga<br>caatacatcatgataaagggatcaactgaacagtaagtgttaactgtcttaaatatatgcacacccagcactgaagaacctggattcataaaacaactac<br>ttctagacctacagaaagagttggctacagaataagagtgggggatatcaacacttcactgacaatgttagacaaatcattaagacagagaaataacaaa<br>gaaattattgacttaaattcaacaattgaccaattggacctaatagacatgcacagatcttcattcaacaaccacag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	13908316	13908616	1001284	0	-	pAlu5-13887951; RIP_Alu_chr5_013_02	NA	NA	SINE	Alu	Ya5	tatttacccagtaggcattcaggagctggttgttcagtttccatgtagttgtgcaattttgagtgagtttcttaatcttgagttctaatttgattgcact<br>gtggtctgagagactgttttttatgatttgcattcttttgcatttgctgaggagtgttttacttccaattatgtggtcgatattagaataagtatgatgt<br>ggtgctgagaagattgtatattctgttgatttggggtggagagttctgtagatgtctgttaggtccgcttggtccagagctgagttcaagtcctgaatat<br>ccttgttaattttctgtcacattgatctgactaatattgagagtggggtgttaaagtctcccactattgaagagtatgggcattaa<font color="green"><u>AATGTAAGATTTAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AATGTAAGATTTATG</u></font>gatgaaaatctatgtggagtggttcttgttagtttacttttcatattgagtgatgcatgaggtaggtgttcagagtaatattct<br>gcatcatagtgagagagaagcattttttattttacttaaaattaagttaaatgtaattaaattactagtgaatcattttactgattgtacttttatgcta<br>taaaatgcagtacatttgaaaatttttaggttatgtgtaagcttaattttgtaattaaacatttctttaacatgttaaaaaaagtctcccactattattg<br>tgtgggattctaagtctctttgtaggtctctaagaacttgctttatgaacctgggtgctcctgtttcgggtgcatatacatttaggatagttagctcttc<br>tc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DNAH5:NM:001369:30/79	
0	chr5	17959799	17960110	1001285	0	+	pAlu5-17923529; RIP_Alu_chr5_017_01	NA	NA	SINE	Alu	Yc1	gaaatgaaatggcatagttttttcatagaacttttaaataatgtctatgttacttataatacttagtacaatgtaaatgctatgtaagtagttgttatac<br>tatattgttttagtgtgatttttattattattgcatttttttttttttaatatttagatccttggttggctggaatcagttgcgcaggaacctgtggcta<br>tagcgggtggactgtgtgtttcattctaattcctaacattcattttctttgtagaaagaattcttgcccactctgttctgtgttctttttgagtgctttg<br>ctcagatgtttctcgggtgagggattgatctagagaatataattttccattacactaagggctggatatggttggaggaacat<font color="green"><u>AAGAAAACATGGAAGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTATTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAAAACATGGAAGGG</u></font>aaactgaaggcaaatattgaaatgacagatgagatttataaaggagaaggggagtgctaacattcagaaag<br>cagatactagaatttcattagtttgaaagcattggcttttataaagtctttgatcaaattagtttagatagaaaataacctctttttttttttttttttt<br>tgagacggagtcttgctctgtcgcccgggctggagcgcagtggcatgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctc<br>atcctccccagtagctgggactacaggcgcccgccaccacgcccggctaatttttttttttgtatttttagtagagacggggtttcaccgtgttagccag<br>gatggtctcgat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	21374013	21374302	1001286	0	-	pAlu5-21337738; RIP_Alu_chr5_021_02	NA	NA	SINE	Alu	Ya5	tatagttaatgatgaatgaaagaaggaagatgttaagatgttagggaaggactcaaaagatgcagtgcttgagttagaattttaagggagattatgcaaa<br>agcagtcacttaaggtgggttggggtaatctagaatgtgggaatgaggtatgcaaagtcacacaggagagatacagcatgcatgtttagaaaattgttaa<br>ttacatatggaaagtttgcaggacttgcatcctagaatgtcaggattttaagctaagtagggttcaaattaaatttttcacatacttcgctgcattataa<br>taactagtttatgtttaactcatccactaaactaagttatttgaaaagagatgccagtgttcactcaatctagttgtctgtcattaataattt<font color="green"><u>AAAAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA</font><font color="green"><u>AAAAATA</u></font>ata<br>ataatttaaaaataattgagattttaattttggtctgctaagcctgtttaattaaaatttgacattaaataagattttacaggcttctaatttttttttc<br>agtcatcacagtttgaatattaaacattactacttttatctccctcagtcagcataaaacatactacttatggttttaataaccaaattcaatgagcacc<br>aacaaaatttgatgtaactattaactttgaaattttattgaaatagaactatgccttgggtatcattcaaagcatttaattgttgcaataaaaaactttg<br>agataaattgaaatgatggacaatatgggtcgaaagcaacattggcttgagggaaaaggctaatgtttgagaacggaattgttaatgaca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	23449523	23449824	1001287	0	+	pAlu5-23413253; RIP_Alu_chr5_023_01	NA	NA	SINE	Alu	Ya5	ataggagagatgccatgtgacaacagaggcttagattgaaatgttgcagctgcaagccaaaagatgcagaggttactggcaaaccactctaaactaggca<br>gtggcaaggaaggaattgtcctctacaaatttcagaaggaataaggccctgccaatatcttgactgattttggactattgatatctataactgtgaaaca<br>atatatttctcttcttatacctactcctctcctccacatttgtactgtttagctatggtagccctaggaaactaatacactcattgatggagacttgttt<br>aatattggataggattacagatcccaaaacattaggaacagcatttgctgtcccctgcagtttcatcccaccatgtatttagcta<font color="green"><u>AAGAGACAGAAACCG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAGACAGAAACCG</u></font>cttcttgaaactgagactatgagctcttttaagttggagttcttttttcctaattaatttttaagagagacgtcaagctttga<br>gagcagtgtgtgtgtgtctataaggatctttgcctgccggtgggtttgctagtgacttcctatcattgataaaatactacttactttcatacatggagtg<br>taaatgaaaaagattaattaaatgtaaaccaatccacagtgatccaaattactaagtgattgaattaccaggtagtggattaatatatggtgacatatag<br>tattagttatttccaagcaattttgtggttttatacattatagcaaacttaaaattttgtaagtgtttctcttctagtctgcactcattcatttagtgtt<br>tt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	24127380	24127689	1001288	0	+	pAlu5-24091110; RIP_Alu_chr5_024_01	NA	NA	SINE	Alu	Ya4	agatggagctggaggctagcatcttttgcaaactaatgcaggaacagaaaaccaaatactacatattctcacttataagtgggagcttgtgttacaagtg<br>ggaatgtgtgttgttctcccccaaccatccatgtgtccttaccacgtgtgcagggtatgcagatttattacataggtaaatgtgtgccatagtggtttgc<br>tgcacagatcatcccatcacccagggattaagcaaagcattcactagatgttcttcctgaccctctcccctcctcctaaaccctgccctccaacaggccc<br>aagtgtgtgttgttctcccccaagcatccatgagatagaacttataagatagatgaaccattattgtcacccccattttccacat<font color="green"><u>AAGAAAACTGAGGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAAACTGAGGCA</u></font>tagggagattaagtaacttattcaaatttatatttctagtaagtgacagagtggagatttgaacccatgacatct<br>ggctctggatcactatgagtaatatctcaaggggcagcttaaattctcactcacctagtattttatcaagtgacatatgaaataaagaaatataagtata<br>taatttattaatatcagaaatcttggccctaaatttctattttaaatgtaggatttagaacctttaataattgtaaatgtcaaataatgttagttatact<br>ttattaaaataagaattggcatacttatctttattatttttcatatgtatttttcttgcttcatcttcttttgtttaactccacatgtgtatgtggttaa<br>tacaacaaaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	24488610	24488918	1001289	0	+	pAlu5-24452340; RIP_Alu_chr5_024_02	NA	NA	SINE	Alu	Yb7	aaaaacttcaataatgattgtatttagtatgataattcatatgtagttattcacttcaattttatattttctgtaatacaatattctggtatttttgaca<br>gtattactatcaaagaaaaaaagtgtgttcatatactatagtaggtaactggcttaaggaactacagaattcaatgaaagtcctcaaaagggctgacctg<br>ttacaatctctaattttccatgttgaaaaaaaaatcattaattttaaaaatgtgttcacatgtttaaaggcttggaaagtcaacagtgagtctttaaata<br>attttgtgtttttctcatcattaaaccaaatgaaattgacaggaatgagaacctctgccaaggggagacacttgttattttctgctt<font color="green"><u>AAGAAAACAATAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAAAACAATAG</u></font>aacttggacattttagtgtctaagacaaccaaacactcaaacttagaaaaaaaattagagtatgtggttgtataattt<br>tagatttctgaattccttgtataagtttatttgtaatgtagattttattaaatttattttctattgtataaatgattgcatacatgtaacagattctaat<br>agattattgttaaatatagtagttaagagcataaattcaggtgttaaccttccactgttaaatcttattttgataaattattatctgcatgaccttgagt<br>aaattaatagcacctttctcgttgagatgttacgggaattgaatgagttgacatgtgtaaatgacttataatggtctgcacgacattcagaaatcaatca<br>gtaaaattt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	26146960	26147271	1001290	0	+	pAlu5-26110690; RIP_Alu_chr5_026_01	NA	NA	SINE	Alu	Ya5	ttacttataattgtaaaatgaaaaaagaatggatctttatactatcaacattacagatatgtccccaataaggagtaattaaaatgctagtctcacccat<br>gtttccagatcatagttcaactagagaaaaaaaaaaaaatcatcactcctaattatgcaaatgtgggaatattgatagacattatccttggattacgatg<br>ttactaagggatgaagtctgttctctgatatatatctggtgtaaaaaatttgtccttgcagaagtcattggccaatttaaagaggctttcttaaaatgtc<br>taaagccgacttcctgcagatcctctttctctcattaccaagtatcacactattttctctttatggtgcatatatataagctataa<font color="green"><u>AACAATACATTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGTCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AACAATACATTACTG</u></font>gcttcttcccttggacttataatgtcacctctttatttgaagcaagcatctagtcattttctttcatcttttc<br>acaagtgcatattatactttagttctctagataattacctctttcacttttatcaccctgcttctggctaacttccacatcacagctactatgaggtaat<br>atgaaccactcctaagtaaatgatattcttgaaactgctgaccagaaaattttacatccctatagaagttatagatacagcaatgccttaggatctcttt<br>tgaaaagtggcaaatacatctggttattctgcaaatttctaaaccctgagttatacctgtcatcattgcaggattcaaaaaagtgttcctgctctatctt<br>tgtatgtcaaaca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	31713199	31713505	1001291	0	+	pAlu5-31676929; RIP_Alu_chr5_031_01	NA	NA	SINE	Alu	Y	ggactgctttccccaaggccagagacatggcggatcctattccttcccctgccaggtgacttaactcactcccttgttgtaggcctttgtgtcccctcga<br>tagggtcagccctatgaaaaaaggatgaatctacctaggagcaaggccctgcttggggaaaaacaaccaaaatgaaaagtggttcatggctgataagagc<br>tgaaagctttgaaagcttcagttgccaggaagggttgcattactgtcaagccgaggcggtggggaatgacagcggattattgtgtcctgccctccctagc<br>cttgcactgggtttcaggggagcttctgggacaaaaccattcgagagtgagaccctgtctctaaaaaaaatttttatttgtttaaa<font color="green"><u>AAGGAGGTATATCC<br></u></font><font color="red">GGCCGGGCGCAGTGGCTCACGCCTGTAATCCCGGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAGCACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCAGCTGCTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTTAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGGAGGTATATCC</u></font>atgtgatggagtactatttagtgataaaaagaaatgagctattgacacatgcaacaatgtggatgaatctcaggatcat<br>tatgctgagtgaaagaagcaagacaaaaaagagtacatacggcataaatgcacttatatataataaaattctagaaaaggcacgctgatctttaggggta<br>gaaagcagaccaacgtttagggggtcgaatggggatggtaggacagcagcagaggaggaaggggggaggaccaagggaagggagggactttgggggctaa<br>tgagtatgtccgttatcttagttgtaaagatggtttcatggataatgatggttttatatataaccatatgtaaagatggtttcataggttaaaagttagc<br>aaacctg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	61812489	61812801	1001292	0	-	pAlu5-61747158; RIP_Alu_chr5_061_02	NA	NA	SINE	Alu	Ya1	tcaagtgggcttcattcctgggatgcaaggctggttcaacatacgcaaatcaatgaacgtaatccatcacataaacagacccaaagataaaaaccacatg<br>attatctcaatagatgcagaaaaggccttcgacaaaattcaacagcccttcatcctaaaaactctcaataaactaggtattgatgggacatatctcaaaa<br>taaaaagtgctatttatgacaaactcacaaccaatatcatactgaatgggcaaaaactggaagcattccctttgaaaactggcacaagacagggataccc<br>tctctcaccactcctattcaacatagtgttggaagttccggccagggcaatcaggcaagagaaagaaataaatggtattcaattagga<font color="green"><u>AAAGAGGAAGTC<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACAAGATCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCATGGTGGCGGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGG<br>TGTGAACCCAGGAAGCAGAGCTTGCAGTGACCCAAGATCACGCCACTGCACTCCAACCTGGGCGACAGAGCAAGACTCTGTCTCCAAAAAAAAAAAAAAA<br>AAAAAAAAAAATG</font><font color="green"><u>AAAGAGGAAGTC</u></font>aaattgtccctgtttgcagatgacatgattgtacatttagaaaaccccatcatctcagcccaaaatctccttaag<br>ctgataagcaacttcagcaaagtctcagaatacaaaattaatgtgcaaaaatcacaagcattcctatacatcagtaatagacaaacagccaaatcataag<br>tgaactcccattcacaactgctacaaagagaataaaatacctaggaatccaacttacaaggcatgtgaaggacttcttcaagaagaactacaaaccactg<br>ctcaacaaaataagaggacacaaacaaatagaagaacattccatgctcgtggataggaagaatcaatatcgtgaaaatggccatactgtccaaggtaatt<br>gatagattcaatg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:IPO11:NM:016338:9/30	
0	chr5	70226686	70227001	1001293	0	-	pAlu5-70347702; RIP_Alu_chr5_070_01	NA	NA	SINE	Alu	Ya5	taataaagtgttcacagattgcatattttatttggaaaactatcaaggataattaaaggggcaagagattagctaagatataattggttctgggaacaaa<br>agcaatagagttccatgaagcaaagagcattcatgatttgggtgaagcggggcattcacccagaataaaagacttgctaagtttgctcaggttacatcag<br>ggacacatgtaatataggtggttaaatagatgggggggttaatgcccataaattcttagtccagcattctcatgatgacaggaaaagtaagaagatattg<br>tcctatttatgtgaaaactggcatggaaaagggagaagcaaaagagaaaattttacaatccattaattagtttcattagctt<font color="green"><u>AAGATATACTCACATATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>GGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATATACTCACATATA</u></font>tgcatcatcaaaattctggaaaattaggccactactaacacagcttccaatatgttggtaaagcaa<br>tagttcatcaagattaaaaataacttagtatatacatttctcaggtacattttatatttttagtcaaagagcccacacaattgttttatgttgatatgga<br>aaagacagtgctgacccatttctcgtaaagtgagaaactagaacttttctttctttctttctttccttctttctcttttttctttttttttttctttttt<br>tttgagacagtttcttggctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagcctcccaaatggctggaattacaggcaaccgcca<br>ccacgctcagctaatt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	77140989	77141306	1001294	0	+	pAlu5-77143846; RIP_Alu_chr5_077_03	NA	NA	SINE	Alu	Ye5	actctcatagactgaaatgtaaattagcaaaatcactttggaaaacagtttatgtttgtattgtctagaaaagttgaacatatgctaagctagtagttct<br>acttctatagttctacttctatgattatacccaagagatattcttgcatatgtgtagcagtaaatgtgaataagtatgctttagaagcattgctcataat<br>agcaaaaaaagataaccaaatattcatcaaagtagaatgcatgagtatcatacagcagtagaaatgaatgaactgaaactacacacattgacatgaagaa<br>tctcaaagacaatgtagagcaaaagaagcaaattacacacaatcacagacagcatgtttgcatttatattaacttcaaaagcagacaa<font color="green"><u>AACTAAACATTA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCCAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACTAAACATTA</u></font>tatcttggagagatatattcaaacatggtaaaacttcaaaagaatggcaaagaaaagattgctcaaacat<br>tagcccaattgttagtcctggcagggaagagaggcacaatattgggaaagaacatatggagagcaatgttttacttgttatcttggatggtggctacata<br>atcacttactttgttactgagaggtgaagccagctggacttcctgggtcaagtggggacttggagaacttttgcgtctagctgaagggttgtaaatgcac<br>caatcagcactctgcagaaacgcaccaatcagtgctctgtgtctagctaaagaattgtaaatgcaccaatcagtgctctgtaaaaatgcaccaatcaaca<br>ctctgtgtctgactaaag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	88067786	88068099	1001295	0	+	pAlu5-88070642; RIP_Alu_chr5_088_02	NA	NA	SINE	Alu	Yb7	aggcattttgccttgtctcacagagctcacttgaacatgtagctctctttgagctcaaagttctgaaactttcttttatttggatgtttaggcattttga<br>gttttcttcacttgtttctttttcttttctaggactttgaattatgaatacaagcatataagactaataagcataaacagaattagtcactatggaccat<br>ggctaattctgccattggcataaccattttttaatctaccaaactgtcatcttctattatcccctctcctccttccatctccatatccaatgagatacca<br>aatcttattcatttttcttcagaaatgcctgtctctacttccactgccaccatcttagctttggcttccatcaccatttgaata<font color="green"><u>AATATTTCAGCAACTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AATATTTCAGCAACTC</u></font>tccatctgggcctctggtctctacttgaggggttcttcaccaggccttaagaggagtttcaggccttcag<br>aggagttccttaaagctgtatgcaaacttttgtgcatttgtgtgatgctaaccaacccactcaaggaagtctttctgaactgctacttccatcatgttcc<br>tttttcatacatgagtgcttaacacagttgagtcagtgccctgcctggctctcagaactgtctacagttgacacactctatctatgaaacctaatttcca<br>atggtcacagcctgccttatggtcctcggaatatatgcaaatctttgctctagcagttcaataactggcagtattggctctcctgtttaattcaaattta<br>tcttttaaggatca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MEF2C:NM:002397:6/11	
0	chr5	95935488	95935817	1001296	0	-	pAlu5-95938354; RIP_Alu_chr5_095_03	NA	NA	SINE	Alu	Yb7	acatccatatccaaaaagatgaacataggcaagaaaacttcatgcctcaaagaaaaattaaccaaaaatggattgtaaacataaatgtaaaatgtaaaat<br>tacaaaacttttaggaaaacacaaggaaaatttgagaattagggctaggcaaagagttcttagactccatgcatgaaatacaatccataaaaggaaaaat<br>tgatgcattgaacttcatcaaaataaaaacgattgctatgtgaaagcccatgttgaaaaaagatgaaagacaagctacacaatggagaaaagattagcag<br>accgtatgttcaataaatgactagtacctaagatacacaaaaaagctatcaaaacccaacagaacaaaatgaatcaatccaatt<font color="green"><u>AGAAAGTGGGCAAATG<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGTGGGCAAATG</u></font>tgtgatgtttggataacaaatttggtgtatttccaatggaatactacgtagcaa<br>taaaaatgaatcaaatactgaagacaaatcatagaagatctcaaaaacattataataatcaaaacaggccagaaacaaagaatatactatatgattccat<br>ttatatgatgttctaaaacaggcaaaaatcatccctcatgaggaaatcagaagagtggttgtttgagaaagttggattgtctgagaaggggcacaaggga<br>actgtttaaatttatgtaaatattctctatcttgtttgcagtgtgagttatatggatatgcctatgtcagcattcaccaaactgtgcatttatgatctgt<br>gcatgtcattttttttttgagacagggtgt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	103058467	103058778	1001297	0	+	pAlu5-103061322; RIP_Alu_chr5_103_02	NA	NA	SINE	Alu	Yc2	actttttgttttctaatttattatccccacactattgcttttattctctattcttctaaactgtcattcaaattatacaactaaataaatgttaaaaaat<br>tataatttatatctggtcttgcggtcaaagatagtttgataacataacaaagatttcttacacatttttctttagtatataacatatagttaagactgat<br>acagaaaccttaggatgcatttgcaggtaactagttacatatccaatctttctgtctctctatctagtcttggaacctaaaaatacagaaatatgcacct<br>tgctaaagacaaaagaagcacagccatgctggaatgcaagaatttgtacagatgttaaggatgtgcttcagcctggttctcgcattt<font color="green"><u>AAGAATCAATTGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACCGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAATCAATTGT</u></font>aaaaaataaagaaaattctaaagtgtatcgtcaggttcctagaaataaatagtataaagtagaggcagaaaggag<br>atgaaatgggggaaatagaacagaagatgaaaataaatgccaaacttggaggcattaaaataattctgtaagcatattttttacttgaggttaattctca<br>tttttgttaggacattctgtcttcttaatagcaaagagttgattgaccattttgaccctaatttccatcctaagcaagtcaaaaccacaaaggcaaatca<br>cagttattttttgtgtgaaaatagtccagatatggaccattactcttgatgcttgtatttttgtgttagaatatgtttggggaatgcctgtatttgtgaa<br>ccctatggttat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	116456095	116456399	1001298	0	-	pAlu5-116458955; RIP_Alu_chr5_116_01	NA	NA	SINE	Alu	Yb7	catataccctggaaatttctataatcataatgcatcgattttttaaaaaaaggaaatttctttagtggagaaccttatcatctaattacttctttgtcaa<br>aatgatatattgacttattaattatgaaatggccccaatcaatgatgatattaatatcaatgtttgttactataatttaaatatcattattctgtgtagt<br>atcagtaaagtctgtcattggttgaatttgtgttttatattgatattgttctgatttttaattttaaaaatttttaaattaatttattaaaatcttaaat<br>tagtttaaaaattttatactctgccagtggacacatatagtaacagttgtaaaaagagtaatctggctaggagaaatgctacccttt<font color="green"><u>AAATTGGAGTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTCACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAATTGGAGTATG</u></font>tcaccgaatggtttgcctttgcatggcctaatgaaagttagcaaaagagaacttggccacatgtgtggccctgtgggaagag<br>gtaggatgattttatgaaaagccccctgggctgagagccacaactcctaaatcattagttatcagtcatgtatacttgtttgatcagttcattttgtgag<br>cctcggtttacttattgtaatagagaaataatatttacccttcagaatgagaagctaatgatatgatgcacatggaagggttttgtgaattattaaagcc<br>atgaaaggatagggagttccttggcatctcagtagaagactagcaatatatgatcacctgtaatccgttaaactctgattctggcagtcgttggctttat<br>tgcag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	141403954	141403955	1001299	0	-	pAlu5-119142738; RIP_Alu_chr5_141_01	NA	NA	SINE	Alu	Yf1	tgcctccagctttgttcttttggcttaggattgacttggtgatgcgggctcttttttggttccatatgaactttaaagtagttttttccaattctgtgaa<br>gaaagtcattggtagcttgatggggatggcattgaatctgtaaattaccttgggcagtatggccattttcacgatattgattcttcctacccatgagcat<br>ggaatgttcttccatttgtttgtatcctcttttatttcattgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttggattc<br>ctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgtctgttgttggtgtat<font color="green"><u>AAGAATGCTTGTGATTT<br></u></font><font color="red">GGCCGGGCACGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACGAGGTCACGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTCTACTAAAAAGCACACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGACCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAATGCTTGTGATTT</u></font>ttgtacattgattttgtatcctgagactttgctaaagttgcttatcagcttaaggagattttgggctgagacaatggggatt<br>tctagatatacaatcatgtcatctgcaaacagggacaatttgactttctcttttcctaattgaataccctttatttccttctcctgcctaattgccctgg<br>ccagaacttccaacactatgttgaataggagcggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgcttccagtttttgcccattcag<br>tatgatattggctgtgggtttgtcatagatagctcttattattttgagatacgtcccatcaatacctaatttattgagagtttttagcatgaatggttgt<br>t	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	146039351	146039352	1001300	0	-	pAlu5-130120284; RIP_Alu_chr5_135_01	NA	NA	SINE	Alu	Ye5	gatatagatcaatggaacagaacagagtcctcagaaataacgccacatatctacaactatctgatctttgacaaacctgagaaaaacaagcaatggggaa<br>aggattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacaccttatacaaaaattaattc<br>aagatggattaaagacttaaacgttagacctaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaaggacttc<br>atgtctaaaacaccaaaagcaatggcaacaaaagacaaaattgacaaatgggttctaattaaactaaagagcttctgcacagcaa<font color="green"><u>AAGAAACTACCATCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAGAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACTACCATCAG</u></font>gagtgaacaggcaacctacaaaatgggagaaaattttcgcaacctactcatctgacaaagggctaatatc<br>cagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcgaaggacatgaacagacacttctcaaaagaagac<br>atttatgcagccaaaaaacacatgaaaagatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctctcatcagtta<br>gaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttca<br>accattgtggaagtc	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PPP2R2B:NM:181674:5/10	
0	chr5	158524983	158525314	1001301	0	+	pAlu5-158527851; RIP_Alu_chr5_158_01	NA	NA	SINE	Alu	Ya5	ttgagaattaggacgcttttcctttccttttttaattcccagtacactgaattgaattcatcacaatccttgattgacgatgtactgtcatcatttgtct<br>gtgcatgtccctccttttatttagtcagtaatctaattaactattgtcaataatgtaacaagcatttatgaacccacttcccacatacaggtgaaggcct<br>ggagaataaaccacatctaacgacaggggcaggcctgcctatatataccatgttctcgcccctctgccccacgaaaccactatcttgaatcctgtgtgct<br>tcattctcttccctgcttccctttttatagtttggttttatctatatgtatttctaagtattacaaattttaaaattttgtttttaacat<font color="green"><u>AAAAATAATA<br></u></font><font color="red">TCCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATAATA</u></font>atatcctacattatcatctttttggatttacttttttacctcgtgctgctatgatcat<br>tcatactgatttgtgggtcactatttttaacatagcactgtgactattaccacattttatcatctactttcttgttgcattggcatctgggttgttccca<br>ggattctggtgaggtgaactgttctacgaacattcttctacatgtctcctactgtacacatgcaagagtctttgaatatatacctatgaggagatcatgc<br>caaactctcttccaaagtgactacaccactttacactctcatcagtaccatgggatatcctgtggagctgcaacttcccccatcataggtattggcagat<br>tttttccctcccctttctatctccttcctttt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RNF145:NM:144726:8/11	
0	chr5	160363893	160364214	1001302	0	-	pAlu5-160366767; RIP_Alu_chr5_160_01	NA	NA	SINE	Alu	Ya5	gtgaagctaccatagaagttcaaagattggtcagcctggtggtccttgaccccagcaaagccacaccataccctccacaaacacctgcagcagaggccac<br>tgagacacttatagacaccgtgaacattgaatacagccataaaaaaaaatcacataaagagtatactactgcacccacccagaaccaagtcaaaacatcc<br>taccaaacatactatggacacatatacaggaaaaagtcttttcctatgaaagctacttcataaaattagaagctgttggtccactaagtacatagatatc<br>aatgtagaaacaaaagaagaaaaaaaagaaaaagaaaacatggcactttcaaaggaacagaataattctccagtaacagatcccaataaaa<font color="green"><u>AAGAAATCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGAGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATCT</u></font>atgaaatgtcagaaaataaatctgaaataatgatcttaaggaaactctgtaggatataatacaatacaa<br>agaaacaattcaacaaaatcagaaaaaaaaatcatcatctgagtgatatattcagcaaagggatattataaaaaataaccaaatggaaatatttaaacta<br>aataatttaatgaataaaataaaaaatgaaatcaagagcttcaataatagagtagagcatgcagaagaaagaatttctgaacttgaaaaaggtgttttga<br>aataacccagtcagacaaaaaagaaataaatttattttaataaatgaagaaagcctatgagacttatgggacaacattaagcaaacacattttacattgt<br>ggaagtttcagagggtgaacag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	89896192	89896498	1001303	0	-	pAlu5-89899055; RIP_Alu_chr5_089_01	NA	NA	SINE	Alu	Y	gcaaaagctaatgggtagagagcttcttttggaggtgatgaaaatgttctggaatagacagtggtgatggttgcacaactttttttttgagatggagttt<br>tgctcttgttgcccaggctggagtgcagtggcgggatttcagctcactgcaacctctgtctcccgcgttcaaacgattctcttgactcagcctcccaagt<br>agttggcaatacaggcgcccgccaacacgcccagctaatttttttggatttttagtatagacagggtttcaccatgttggtcaggctggtctcaaactcc<br>tgacctcaggtgacccgcccaccttggcctttcaaagtgttgggattacgggagtgagccaccacgcccaggccacaactttttaa<font color="green"><u>ATATATTAAACGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>TATATAT</font><font color="green"><u>ATATATTAAACGCC</u></font>atggaaatgtgtactttgaaaggtgattgtttttcatatgtgaattatctatcaatttaaaaaacaatcaaacctctgc<br>acttccagctatctctttctcttctttcaacatttccagccaggttaatctaatacgtgtctgggacaaaacacttgtattattcatgcttctgcacctt<br>taatctaagctagtcccagtcctctctacctttttccactccctctcttccaccatttttcaaagtcccaatcaagtcccactttttccagaacactctc<br>caaccttagcttactagtctgccagagaaggaacaagctctcttcatttcattcctgctcatcaacactgttgaaattagttaaataaaactaatgattc<br>taactat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GPR98:NM:032119:1/90	
0	chr5	11392039	11392349	1001304	0	-	pAlu5-11371677; RIP_Alu_chr5_011_01	NA	NA	SINE	Alu	Ye5	atttgtgattaggtttcagcctacaaatctagggggtcacaaacattcagaccatagtggctgccataatagattaccacaaagtgggtggcataaacca<br>ggagaaacttatcatctcacagttctggaggctggaagtctgaaatcaaggtgtcagcaggaccatttcccttcaaattcagtttttcctgtggcaatac<br>catctgttcctcaccatgtaccagccctcacctcctcccgcggtactgcttttgtcacatctgccttatttccccatagcatgatggtcatttgtagatg<br>tccctttccctctcacacaactttgaaagctcattaaaaaatgaggctgtttaaaaaatgaggctgtttaatgaaagctcattaaaa<font color="green"><u>AATGAAGGAACTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGTTCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AATGAAGGAACTG</u></font>tgtactcagccctcatagccaagagggaagataggaagaagggagagaagactccaaggcaaaaagacctttttgt<br>tttataaaacttccttttcaagagttcttttatcagtttaaaagaaagtaatgttcacacacagtatttgtctgtgataatattgatttttttcagtact<br>tataataaacaattgcattccaaaataacaactcatttctaatgctacctaaatatacccacctaatttatactaaggcaggttctggcataggggcctc<br>catgatatcatgtggtcaagagtaatgagagacaggcaatcatgcctgatgcatagtcctacccaaagtactagttacttaattcctcgttagcaaatac<br>cccatcctttg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CTNND2:NM:001332:9/22	
0	chr5	62740208	62740517	1001305	0	+	pAlu5-62674875; RIP_Alu_chr5_062_01	NA	NA	SINE	Alu	Ya5	atttttattttgtcaaaattaggaacattttctcttccaaataaagtttctttttagaaaatggaaaagcaaggcagatgagaaaatatttgcaaaacat<br>atctgataaattacttatgctgcattatatcaaggactctcaaacttcaataagataaataataaaaggaatttgcaaatgattttaacacatttatcaa<br>agaagatatacagatagttaataaatacataaaatatcacaaattcactagtcattagagaaatgcaaattaaatccaaaatgagataccactgtacatt<br>ctttatagtgggtagaaataaaaagcctgatcatgtaaaatgctggtgagggtgtgaaacaattttaactcttaggtaatgctgatt<font color="green"><u>GAAATATAAAATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATGCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>GAAATATAAAATC</u></font>atacaactttggaaaacagattatcatgtttaaaaaagtgaaatatacacgtttcttccactcttaggtattactta<br>atgaagataaatgaaaacatatgcccacacaaaggaatgtgaatggaataaaaaagacaagaaaactatgattcaattccataaaattccagaaaatgca<br>agcttgcctgtcataactgtaagaatatcagtggttgctggagacaaaagacaggtgatgacagggaagaatagctgtattacaaagtggcatgaaaata<br>cttcttggagtgatggatatgtttatttccttgattgtagtgatggatttacaggtatgcacatatgttaagttcacgaaattttacactttaaatatat<br>acactgtgct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	168675118	168675338	1001306	0	+	pAlu5-168677982; RIP_Alu_chr5_168_02	NA	NA	SINE	Alu	Ya5a2	ataaaggagtcgattcatcaagaggacacacaaatcctaaatgagtatgcatccaacaacagagcttcaaaacacataaaaacacataaaaagagaaatt<br>agtagaacaaaaaggacaaatagacatattcagaattatagttggagatgttaacactcctattgcagtaattattggaacaagtagacatgaaatcggt<br>aagaatctatatgagagacttgcaaaacactagcaatcaaataagcctaactgacatttggagaactttctacccagcaacagaagaatagacattattt<br>tcaagtctacttggaagatccagataaataatagtctgaagcacaggacaagtttcaataaatttaaaaagagtgaaattatataaa<font color="green"><u>AATGTTCCCTGAC<br></u></font><font color="red">TCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAG<br>GCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATGTTCCCTGAC</u></font>caaaacagaattgaactagaaatcaaaaacacaaagatatgtggaaaatcaccaaaaattttgaaa<br>attaaatcatattcttctaaataaatcatggtcaaaggagaaatcacaagagagattagaaaatattttgaatggaatgaaaattaaaatataatatttt<br>aacattcgtggactgaagctaagatagtatttagagggaacattaaggcattaaatgtttatattagaaaagaaggaaggtttaaaatcaataacctaag<br>cttccacattcagaaaccagataaagaagagaatgttaaatccaaagtaaacaaagtaaggaaagaataaagagcagaaatcactaaaattgaaacagaa<br>atgcaatggttttgaaaagca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	172632854	172633165	1001307	0	+	pAlu5-172635719; RIP_Alu_chr5_172_01	NA	NA	SINE	Alu	Yg6	cataatcaacagtcggcctcataagacaccgtaggctctcgatagctgggtgaaggcaggaaggcagctcggctccactaagacatctagggccccaggc<br>tcctcctatcttgttggtcaccagcctgtgtgatgggagaaagagagatagttgagggtaggcaatttcctttccaggaagagatgtgggaatcagacac<br>atcaagtcttctcactgtcattggtgaggacttggtcagggaccacccctaactgcaaagaggtctgggaaatgtaatctctgctggggcagccaggatg<br>cagcctggggttttattattaaaaagaaggggaaaatgagactgggggaaaatgaaagtcttcggccacggggacttttaaaataa<font color="green"><u>AAGAAGGGCTAGAA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTGACACG<br>GTGAAACCCCGTCTCTACTAAAAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCGCTCCAGCCTGGGCGGCAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAAGGGCTAGAA</u></font>attgttgactgtaccagactatcttgcagtcttttattttagctaaactcatacaactctgttactatgggaat<br>aattgaaatgctatagtagtaatggtattattataatagcattatctctgttttcctgtagttatcactcaataaactgccttctctcaggtgagcactc<br>agttgtaacatccaattattcgatttggcagtttgtcaaatgacatccctgtcatatactttcttaggtgctgggtgcttacaaaaagggcaaaggatag<br>agccgctgctccccagacgactcaaaatgactttcatgtggaacacaggaggagtgagaagggcctcccatttatttaccatctactaagacgttgtgtc<br>cctgtcacgtac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	177313971	177314265	1001308	0	-	pAlu5-177449513; RIP_Alu_chr5_177_02	NA	NA	SINE	Alu	Yb3a1	aggtgtggtctcctttagtaggtattacccaggggttttccaaagtagttgtgctattttacattcccaatagtatatgaagtttcagttactccacatt<br>cttgcccaaacttggtatcaacagtgtttttaattttagccattctggtaggtgtaatattgatttctcactgtggtttaaatttgatggcttatgaggc<br>tgagcatgttttaaatgctttttggccatttggatgttcatttgctctttcctctccctccttccctccctcctccctccctcccccctcctccctccct<br>ttcttctttcccttttgtgtccctcttcatttctttcacccattgtcctattggtctgccagcttttttcttaattttttaaaaaatttat<font color="green"><u>TTTACTTTA<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCATGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCAGGAGGCAGAGCTTCCAATGAGCTGAGATCACGCCACTGCAATCCACCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>TTTAC<br>TTTA</u></font>agttctgggatacatgtacagaacgtgcaggtttgttacataggtaaacatgtgccatggtggtttgctgcacttatcaacccatcacctaggtat<br>taagcccccgcatgcatttttattaacttacaggaattctctttatactctacatgtaatttatcttttcaccctcctccattccccacctctttttttt<br>aagagacagagtctcaccctgtcacccaggctgcagtgcagtggcacaatcatggctcactgcagcctcagcctcccaggctcaagtgttcctcctgcct<br>cagcctcccaagtatctgggaccacaggcatgcaccaccatgcccagccaatttttcattttttgtagagacgaggtcttgctaagctgctcagg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	57958938	57959100	1001309	0	+	pAlu5-57893600; RIP_Alu_chr5_057_01	NA	NA	SINE	Alu	Yb8	atcacctggattgctctcaccaaccactggtaaattttaatatgcccaagtgcagtgagctgtgttgttgaggtgtttcctggtgttttggagccatcta<br>tgcatttaaatagagtcatcaactgcacaggaaaggcaaaaccatacagcttatttattaaatgctcataaaattgatgccctgccctagagcaaaacaa<br>ttataaatcactggatccacagagagctgtaattcacctattgggatatgatttcctcaggatattgcctactgatgtcagcagcttctggtctaagatg<br>tgagctgtgtccatgccaccaggtcacctgtagttatttttctattgattcatttacagttatactgaactgaccagtttttctggcatt<font color="green"><u>AAACACAGCT<br></u></font><font color="red">ACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGAC<br>AGAGCGAGACTCCGTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACACAGCT</u></font>taaattcggtgcaaattaagcatttaa<br>ttaccccatatttatttttcaagccagacttaagaaaaaagtacagcatttttctagttggatagtacttattttcagtagtaggcatattcttcttttt<br>ccttgtgcttttactttcctaacactaattttgctagtcctgaacattgccactgtggcagctaaacagcgagataagagatagcaaatgtgagcatcac<br>ttgatacaaatcactttgctgaaggtgctgatgcatatgaagggaaggaaagcaaggtctccatcttgttttactatctctggagcaactaaatcaattt<br>aaaaatgtttacaaagcatcggggccaggcgcaaaggctcacgcatgtaatcctagcacattg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RAB3C:NM:138453:2/5	
0	chr6	9020296	9020607	1001310	0	-	pAlu6-9065197; RIP_Alu_chr6_009_03	NA	NA	SINE	Alu	Yg6	caatgcctgaaactttcccagagttggtccccaaaaagtacataaagctaaagattcaagaagctgagaaaatctctcaaataggataaatccacagaaa<br>tcgagatcaagagatatatcactgtaaaacttttgaaaagaaaaggaaaaagtcttgagggcactcaaaggaggagaaaaaagaaaaaaggaaggaagga<br>aaagaagaaagggagggaaggaagagaaaagaggaaggaaggtagagagaaaaaaacgggagggagggagtgttgggagaaggaagacagcagagatctc<br>atcagataccacagaagtcagaaggaaatgacacacatttttcaagtgctgaaagaaaagaattgtcaactcaaagttctatgtcaatt<font color="green"><u>AAAAATATCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAAAT</u></font>aggaatgaaggagaaatcaatgcactctgtaatacaataacctttaaaatatgtaaaatgtatataatagtatatattttca<br>ctgaatcataaaagtaagtatgtgacatttttgctttgccctggtaaaggcatcattaaactgcaaatacttcattattcttaatctttaaaataactat<br>tattgctttttaaaattattaaaaatatttcattaatgacatataactaatggttatgcttttccttgatcttttaaattacatacactgagagctgttt<br>cgtgtaacacactaacacttctctgtgatagtacagatacaaacatgctatttataaaagttaaaattttcagattttttttcaagaaatttggatactt<br>tgtgaaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	11664093	11664398	1001311	0	+	pAlu6-11618553; RIP_Alu_chr6_011_01	NA	NA	SINE	Alu	Y	attatttttgaaaaattttcagcatctttcccttcaaatatcttttcttctccattgtctctttcttattctggactccaattacatatatgttaaacca<br>tttgaaattgtgccatatctttttttctaaacttctagcattttcatttggctctcagaatttccatctctactgaaattcccaatctgttcatgtgtgt<br>tgtctgcttcttccactagagactttaacatattaacaataattattataaagtctctgtctggttattctacaaactgggccatctctgactctggttc<br>tgtagattgctttatctctcaacagtgagttgtttttcctgtttttgagtgcttcttttaattttttgattgaaaaagtctcacta<font color="green"><u>AAGACTGAGGTACA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGACTGAGGTACA</u></font>tcgtgtttatgtctggagatggtctgttgcttccgttagaccaatagtgagaattgatttaatctacttaggagttgagc<br>tgaatttgaattttgttgttgtggttaccttcagtgcactgcacgcttcacattctgtaaggttgctgttgttgccttgtgcttagggtgggagctctgt<br>actgcagggttattctcagtggcaatgctccattgtagcttttagccatttcttcacaactatgcctcaaaaggggtctctctccacacactagcctccc<br>cccagtggtggaatgctgatgcttgttacttgctgctaggctcctgaggggagctgtcctgtttctgtgttaggcatgctctgtgtatggggatctcagg<br>aggtgg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TMEM170B:NM:001100829:1/3	
0	chr6	23793982	23794293	1001312	0	+	pAlu6-23748441; RIP_Alu_chr6_023_02	NA	NA	SINE	Alu	Yb7	cttgcattttgtaatatggatggcctttactccagttttcaataatttattcctcatttccatctgataccccaacagaatggccttcacggtccatatt<br>tctaccaacattctggtgacaaatcacttacgtaatctctaagaagttccttactttccctacagcttttcttttcttctgaggtctcaccagaatcacc<br>cctaatgctccatctatggcaatgcaggcttttcctagcacactgttccaaactcttctagactctacccattacccagctccaaagctgcttcttcatg<br>ttcagttatttggtatagcaacagctctacttctgggattgttttgtgctgcaagagcagaatacctgagactgggtaatttatt<font color="green"><u>AAAAAAAAAACAGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAC</font><font color="green"><u>AAAAAAAAAACAGGA</u></font>atttatttcctcacagttcttgggactgagatgtcaggatggagaggctagcttctccatcttgaaggccttc<br>ttactgcatcatcccataatggaagggcaaagagagagagagagagcaacagggtgtcaaagtcatccttatataaggaacccgctctcacaataatgag<br>cccacctccacaataatggcataaatctattcattagggtggtgccctcatgatccaaacaccacctgttaggttttacttcccaacacgtacacattgg<br>ggatcgagtttccaacacataaactttggggaacatattcaaaccatagtatgatcttagcaaactcatccctgttctacctgttccagacaaggaataa<br>ttgaagtataaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	30106475	30106476	1001313	0	+	pAlu6-30058815; AluyHJ;1104685373436; RIP_Alu_chr6_030_01	AAGAAACCCATAACTCACTTG;NA	TGTGTCCAGGTTAAACTTCAG;NA	SINE	Alu	Yb7	tcagcgtgtagttttttgttgttgtatccttccctggttttgataacaaggtaatgcttgcttcctagaataaatttgaaagaactccttcccccttcaa<br>ttttttggaatagtttcagatgaattggtgtcagtctctctttaaatgtttggtggaactgaacaatgaaggcatccagtactgggcttttctttgttgg<br>gagactttttattcctgattcaagctcattactcattattggtatgctcaggtttttaatttcttcttggttcattcttggtatattttatgtgtccagg<br>ttaaacttcagttgcctttataatctaatgagagctatggaccaaaattttgggtaaagcactttccgtggcagttagattttttaaaaa<font color="green"><u>AACTTCTTTC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTACGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACTTCTTTC</u></font>attgcccccaccttttttgttgttgttgtttcaagtgagttatgggtttctttttaactgaa<br>ttgtataagcaaaatatctccaagtagccttgaattagtaacaaatcaatcttttgtttaccagtcttgtttgcttaattagcaaatgtggggagggaag<br>aattttagctgtttttttttcttcacctttttctttttggcttttgcatggcacaaaaaacaaaatttttctgttgaacagggataccttctattattgc<br>tctgagatcaagattttgacctatttggtctgagagcctaacttttataaacatttatttttttttcttttatgttactaatttttcaattaagtgtttc<br>attattgtacacagttgttagggaaacc	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 andHLA-B57 haplotypes. Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15592666">PMID:15592666</a>.</LI><LI>Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK. Polymorphic Alu insertions and their associations with MHC class I alleles andhaplotypes in the northeastern Thais. Ann Hum Genet. 2005 Jul;69(Pt 4):364-72.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15996165">PMID:15996165</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	68;NA	501;NA	173;NA	MHC related;NA	intron:NCRNA00171:NR:026751:5/6
0	chr6	41512055	41512361	1001314	0	-	pAlu6-41405388; RIP_Alu_chr6_041_01	NA	NA	SINE	Alu	Ye5	ggtgagctgagatagcgccattgcactgcagcctgggcaacaagagtgaaactccgtctcaaaaaaaaaaaaaagaaaccgataaccataatagctgaca<br>aaacctgcgctgtttggctcagcatcatgaacgcttgttataacaccctgcatggagtgggtgcttggggagggtcggtggtgccactgtgaggagatac<br>ctggtcttcaggctggcagcaagcagaggcctgggaaacctcagtgcagcagtgtgaccaagaaagaacgaaagagtccggcaggagtgaggagcagttg<br>ccagaacatgtgagcaaccaagaacacctttagaggaggtaagtgggaccaagttttattttaatgttttaacatttttactct<font color="green"><u>AGAAATTTCAAGCATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AGAAATTTCAAGCATA</u></font>tactaaagtagacagaacagtatacacagtccctatgcatcccatcacccagcctcaacatagagcaattcatggtc<br>aatcttgtttcttcttcttcttctttttttttttttgagacagagtctcgctctgttgcccaggctggagtacaatggcgcgatgtgggctcaccgcaac<br>ttctgcctcttgggttcaagcgattctcctgcctcagcctcccaagtaggtgggattacaggcgtgtgacaccacgcccagctaattttttttgtatttc<br>tagtacagatggggttttgccatgttggccaggctggtcttgaactcctgacctcatgatccgcctgcctcagcctccccaagtgctgggattacaggtg<br>tgagcca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	42061343	42061643	1001315	0	-	pAlu6-41954677; RIP_Alu_chr6_042_01	NA	NA	SINE	Alu	Ya5	ttctgatgacattttttacagaaatagaaaaaacaatcctgaaattcatatgaaaccacaaaagatcatgaatagccaaaacaatcttgagcaaaaagaa<br>caaagctggaggcatctcactacctaaattccaaatatactgtaaagctatagcaatcaaaatagcatggtactggcataacaatagacatatagaccaa<br>cggaacagaatagggaacccagaaataagtccacacatttatggtcaattgatcttaaacagagctggcatgtatgcacactggggataggacaatctct<br>tcaataaatggttttgggaaaactgcatatccacatgcagaagaatgaaatcggacctttatcttagaccacctcaaaatagatta<font color="green"><u>AAGACTTAAACTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGACCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGACTTAAACTGG</u></font>ccaggcatggtggctcacgcctgtaatcccagcactctgggaggccgaggcgggtggattacctaaggtcaggagtccgagacca<br>gcctggccaacatggtgaaaccccgtctctattaaaaatacacaaaattagccaggtgtggtggtggacacctgtaattccagctgctcggaaggctgag<br>gtaggagaatctcttggacccgggaggcggaggttgcagtgagctgagatcaagccattgcactccagcctgggcaacaagaacgaaactccatctcaaa<br>aaaaaaaaaaaaaaaaaaaaaaagacttgaactgagacctgaaactgtaaaactactggaagaaaacttagggagaaagcttcttgacattggcctgggc<br>a	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CCND3:NM:001136017:1/5	
0	chr6	109966821	109966876	1001316	0	-	pAlu6-52728751; RIP_Alu_chr6_139_01	NA	NA	SINE	Alu	Ya5	atacagcacactgatgggtcttgactctatccagtttgccagtctgtgtcttttaattggagcatttagcccatttacatttaaggttaatattattatg<br>tgtgaatttgatcctgtcattatgttagctggttattttgctcattagttgatgcattttcttcctagcctcgatgatctttataatttggcatgatttt<br>gcagtggctggtaccggttgttcctttccatgtttagtgcttccttcaggagctcttgtagggcaggcctggtggtgacaaaatctctcagcatatgttt<br>ttctgtgaaggattttatttctccttcacttatgaagcttagtgtggctggatatgaaattctgggttgaaagttcttttctttaag<font color="green"><u>AATGTTGAATATT<br></u></font><font color="red">AGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCTTGGGGGGCGGATCACGAGGTCAGGAGATAGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAGGAGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCAGTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AATG<br>TTGAATATT</u></font>ggcccccactctcttctggcttgtagagtttctgcagagagatcagctgttagtctgatgggcttccctttgtggataacccaacctttct<br>ctctggctgcccttaatattttttccttcatttcaactttggtgaatctgacaattatgtgtcttggagttgctcttctcaaggagtatctttgtggcgt<br>tctctgtatttcctgaatctgaatgttggcctgccttgctagattggggaagttctcctggataatatcctgcagagtgttttccaacttggttccattc<br>tccccgtcactttcaggcacaccaatcagatgtagatttggtcttttcacatagtcccatatttcttggaggctttgttcatttctttttattctt	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:AKD1:NM:001146303:3/5	
0	chr6	88376977	88377289	1001317	0	-	pAlu6-88270309; RIP_Alu_chr6_088_01	NA	NA	SINE	Alu	Yb7	caagtcctaggatctgggctgggtgcgatggttcatgtctgtaatcccagcacgttgggagactgaggagggcagatctcttgaggccaagagtttgaga<br>ccagcctgggcaacacggcaaaaccccatctctacaaaaaatacaaaaattagccgggcatggtggtgtgtgcctatagtcctagctacttggggacctg<br>agaagggaggactgcttaagcccaggaggtggagggtgcagtgagccaagatcatgtcactgcgctctagcctgggtgacagagccagaccctgtctcaa<br>aaaaaaaaaaaaaaaaaagaaaagtcctaatatatagaactcttagaatcaatgaaggaaaaaagatcctatcaaagtagaaatt<font color="green"><u>TAAAGTATATTAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAA<br>AAATAAAAAAAAA</font><font color="green"><u>TAAAGTATATTAGTA</u></font>aattagctgggtgtggtggctcatgtctgtaatcctagcactttgggaggccccaaagagcactaaggaagg<br>cagatcacctgaggtcaggagtttgagaccagcctggctaatatggtgaaaccctgtctctactaaaaatacaaaaattagctaggcgtggcagcgggca<br>cctgtaatcccagctacttgggaggctgaggcatgagaactgcttgaacccgggaggcggaggtggcagggagttgagaaggcgccactgcactccagcc<br>tgggggacagagcgagactctgtctccaaaaataaaaataaaaataaagtatactagtaaattatttaacacaatatatagctttaggcaaatgtagcta<br>taactattaaaac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ORC3L:NM:181837:7/20	
0	chr6	114862205	114862516	1001318	0	-	pAlu6-114755536; RIP_Alu_chr6_163_02	NA	NA	SINE	Alu	Y	atggccatactgcccaaggtaatttacagattcaatgccatccccatcaagctatcaatggtttcttcacagaattggaaaaaactaaagttcatatgga<br>accaaaaaagagcccgcatcgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacctgacttcaaactatactacaaggctacagt<br>aaccaaaacagcatggtactggtaccaaaacagagatgtagatcaatggaatggaacagagccctcggaaataacgccacatatctacaactgtctgatc<br>tttgacaaacctgacaaaaacaagcaatggggaaaggattccctatttaataaatggtgctgggaaaactggctagccatatgt<font color="green"><u>AGAAAGCTGAAACTGG<br></u></font><font color="red">GGCTGGGCATGGTGGCTCAACCCTGTAATTCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCATCTCTACTAAAAATACAAAAAAAATTAGCCGGGCACGGTGGCAGACACCTGTAGTCCCAGCTATTCGGGAGACTGAGGCAGGAGAATGGT<br>GTGAACCCGGTAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCTTCTCAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGAAAGCTGAAACTGG</u></font>atcccttccttataccttatacaaaaattaattcaacatggattaaagacttaaatgttagacctaaaaccataaaaa<br>ccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaacagcaaaagcaatggcaacaaaagccaaaattga<br>caaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacagacaacctacagaatgggagaaaatttgtgcaacc<br>tactcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaccccatcaaaaagtgggtgactcaaaagaa<br>gacatt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	163183921	163183922	1001319	0	-	pAlu6-117139445; RIP_Alu_chr6_163_03	NA	NA	SINE	Alu	Ya5	caaagcctccaagaaatatgagactatgtgaaaagaccaaatctatgtctgatcggtgtacctgaaagtgatggggagaatggaaccaagttggaaaaca<br>ctctgcaggatattatccgggagaacttccccaatctagcaaggcaggccaacgttcagattcaggaaatacagagaacgccacaaagatactcctcgaa<br>aagagcaactccaagacacataattgtcagattcaccaaagttgaaatgaaagaaaaaatgttaagggcagccagagagaaaggtcgggttaccctcaaa<br>gggaagcccatcagactaacagcggatctctcagcagaaaccctacaagccagaagagagtgggggccaatattcaacattcttaaagaa<font color="green"><u>AAGAATTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTTTC</u></font>aacccagaatttcatatccagccaaactaagcttcataagcaaaggagaaataaaatactttacagacaagcaa<br>atgctgagagattttgtcaccaccaggcctgccctaaaagagctcctgaaggaagcgctaaacatggaagggaacaatgggtaccagccgctgcaaaatc<br>atgccaaaatgtaaagaccatcgagactaggaagaaactgcatcaactaacgaacaaaataaccagctatcattataatgacaggatcaaattcacacat<br>aacaatattaactttaaatgtaaatggactaaatgctccaattaaaagacacagactggcagattggataaagagtcaagactcatcagtgtgctgtatt<br>caggaaacccatctca	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PACRG:NM:001080378:3/6	
0	chr6	159572116	159572415	1001320	0	+	Yb8AC880; pAlu6-159485453; RIP_Alu_chr6_159_01	ACAAGAAGGAGGAAGCAGGTAAG	CATGAATACACCTGGTGCAAAT	SINE	Alu	Yb8	gttttcttttctacttcctcacatttatgctggatattggcggcttttccttcattatgtgctatgaagacccatggtagactgcaatattagacaattt<br>tgtcatggaaaaatctgtgaaatggatgacatttgcccctccggcactctcactgcaatataggttcctctcccctatagaatctcttccctcagtcagt<br>ctgctctgaagacagggtgattacagtacatttaatatactgtttgcctatcccaggagttttttttttattttaagccttattttagaattataaatgt<br>gtccactattaatggaattttaaacaagaaggaggaagcaggtaaggacatgctatgggaagagggaaatttttgtactgcctt<font color="green"><u>AAAAATTACAAATTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA</font><font color="green"><u>AAA<br>AATTACAAATTGG</u></font>ttgctcgtcacacattccccatcactttgagtatagattattcagcaatttgcaccaggtgtattcatgtttcttgtctattaagga<br>cagctataatgcatttgtaatacactgacaattagttttattaagaaaatcctatataagattttgcatttataaaataaatgagttacttcaaagtact<br>catttcagaatttcttcaaataataagatgtggcataacctggttcaatagagattcaattcacttatattttctaggactatatttgttacttaaagca<br>aaatataagttttaaaaagaatgctatcgttgagaaaacacgtttccagtgttctaaggaattagaagttagccattatgactactgatttgaaatgcct<br>	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	459	146	NA	intron:FNDC1:NM:032532:10/23
0	chr6	6222355	6222601	1001321	0	+	pAlu6-6267254; RIP_Alu_chr6_006_01	NA	NA	SINE	Alu	Ya5a2	taaaattggcattccagaagatgaggattaaacaatagtgtgtgtgaagggcatttcataaactgaacaaattattattctccgtattatatggtgtctg<br>atggctataatagcaaagaaatcttactaaacttattttatttttatttctgagcataaccacacaggtagtgaataaggtgtgagaactaaaagtaaaa<br>tcttatccccaccccactcccaaccaactgtacagactctttcttggctaaggggaccccagagaaaccttaaaaactgagccgcagccatgatgggatg<br>ggaggtggtacacacctcactatattccctttccttttgctgtttagacaaaattgaacagaatcaatgttaaaatagagatcat<font color="green"><u>AAGACTGACACTGTG<br></u></font><font color="red">CAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAG<br>CTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGC<br>GAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTGACACTGTG</u></font>gcaataaaatatataattataaacaagacccaaggcca<br>caccaggcaaggattaagtcatgaacccctgcatttaaagaataaactatgttctaactgccacaaagtttttctttttgtctagcagctaaacaagccc<br>tggtctcaagatgagcaatgttggaacaactacagttcatccatcaccagatgctgactaactaactcacattccaccagccacaactacagttttgatt<br>gcgtaagagactgatttcagcatctttctcctggtaagagactatcaaccatggactggttctggacgatttaccgaagctgcacactacaatgcattcc<br>tgtccctgcttcaccttttgatgtatagggcctaactgaagcacata	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:F13A1:NM:000129:3/15	
0	chr6	17580263	17580561	1001322	0	+	pAlu6-17534722; RIP_Alu_chr6_017_01	TACCTCGATAGTCTCACTTC	GTGTTGGTAGTGAAGAGAGCCAAC	SINE	Alu	Ya5	aaacccgtctctactaaaaatacaaaaatttagccaggcatagtggcgggtgcctgtagtcccagctactcaggaggctgaggcaggagaatggcatgaa<br>cccgggaggtggagcttgcagtgagccgagattgcgccactgcactccagcctgggcaacagagccagactccgtctcaaaaaaaaaaaaaaaggtttca<br>ttctttgtatcacgcttagttatgtttcagtttagccatttagccgtggtatttcccagtggtctggattgacagtttcaggaaggagtagcaccttaga<br>atctaaaccagtgactcactttatgagcttttccaaattacctcgatagtctcacttcataaatatgcgtaagtttctgctctgtt<font color="green"><u>AATAGTGCTGAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>ATAGTGCTGAATGGG</u></font>ggttggctctcttcactaccaacacaaaagcacccaaaggcaatatatgcttttaatttctggagaagtgtattagtttaagttc<br>aactaaaatatctgcttaaatataatttatgtagtataggtaaaaaccaattgcattctgatacttacaagattgcttttatgtaaacagcagctttctg<br>agtagcagaaggtggagaagtgaggcaaaaagaaggcttttttccttttcctatgagccttccaatggcaagagaattaccttggtaattacatggtggc<br>tagcatgtgacggctactgcccgtgctggatgtagatgctggttaacacacaataaaacaccaaggaaggaaggagaggcaggggtttgtgtgatatcat<br>c	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	400	102	NA	intron:CAP2:NM:006366:4/13
0	chr6	68316922	68317226	1001323	0	-	pAlu6-68210256; RIP_Alu_chr6_068_01	NA	NA	SINE	Alu	Yb3a1	tagttctagatccttggggaattgccatactgtcctcgacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttcttcacat<br>cctctccagcacctgttgtttcctgactttttaatgatcaccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatgg<br>ccagtgatgatgagcattttttcatgtgtctgttggctgcataaatgtcatgatcaagtgggcttcatcccggggatgcaaggctggttcaacatatgca<br>aatcaataaacgtaatccagcatataaatagaaccaaagaggaaaaccacatgattatctcaatcgatgcagaaaaggcctttgacaa<font color="green"><u>AATTCAACAGCC<br></u></font><font color="red">CTGTCCAGGCGCAGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACAAGGTCAGGAGATCAAGACAATCCTGGCCAACAT<br>GGTGAAGCCCCATCTCTACTAAAAATACAAAAAAATTAGCTGGGTGTGATGGCAGGCACCTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGAAGAATGG<br>CATGAATCCAGGAGGCAGAGTTTGCAGTGAGCCAAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCAGTCTCAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AATTCAACAGCC</u></font>tttcatgctaaaaactctcaatatattaggtattgatgggatgtatctcaaaataataagagctatttatgacaaacccacag<br>ccaatatcatactgaatgggcaaaaactggaaacattcgctttgaaaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgtt<br>ggaaattctggccagggcaatcaggcaggagaaagaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgatt<br>ttatatttagaaaaccccatcatctcagcccagaatatccttaagctgtattagttttaccttaaattaaaatatactactagagcaaattacttttaga<br>caaag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	77976840	77977132	1001324	0	+	pAlu6-77870174; RIP_Alu_chr6_077_01	NA	NA	SINE	Alu	Ya5	aatgtgattactccagtattgttccttttgctcaggatggctttggatattctgggtcttttgtagttccacttaaattttaggatttttttctatgtct<br>gtgaaaaatgtcattgatatttggaagggattgcattgagtctgtagattactttgggtaatgtagacattttaccaatgttgattcttccaatccacaa<br>acatagaatagttttccattttttcgtgtctgcttcaatttctggtatcaactttatagttttcattgtagataactttccctcctttgatttagtttat<br>cgctaggtatgtgttttttttactttgtaaatggaattactttcttaattcctttttgggttgtttgctgctggaacataaa<font color="green"><u>AATGCTACTGATTTTTGT<br></u></font><font color="red">GGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCT<br>CTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGG<br>CGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATGCTA<br>CTGATTTTTGT</u></font>atgctgattttgtatcctgcatttttattgaatttgtttaccagtccaaatacttttttggtggagtctttagatttttcagcagtaac<br>atttttgtgtgtatatttctatcccaaatcaatttattactacgacgttatgctttttggtatttcttttttaaaagagcagttaatggatgttgtagaa<br>aagcaaagctcaatttcaccttccatttttaaaataaaggcataaaatcattgtcctgtgattgattgttcacaccttttagtttcaacttttagttttc<br>ttaaaatttttgatacaagatatttaattgcaacatagttgaaacatttagcatggcaccaagaagtttatttgtttattttttcatttgttt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	107231226	107231527	1001325	0	+	pAlu6-107124562; RIP_Alu_chr6_107_03	NA	NA	SINE	Alu	Yb7	ggctggtcttgaactcctggcctcgtgatccacccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccatgcccggcctcaacacatttt<br>caatagaatcatggtaatcattagttttgttagtcaaatatttccagttctctccagtttcagaccctcttatggttaggtgggatcttgtgtttagttc<br>caaccaatgcatcgtaagtggaagtgtcatgtatctgggccagagtttgctaggttgatatcctctagggttttcttctccctccagcaatgttcaaaat<br>ggtggccgctctatcagcccaagtccctgagtgacttaagtgtcagagagctctgtcaacctaatggatgggtagcacaagcaaaaaat<font color="green"><u>AAAACTTTTTC<br></u></font><font color="red">GGCCGGGCGCCGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AA</font><font color="green"><u>AAAACTTTTTC</u></font>cacttttgttgttttaagctgctgaattttggggtggaatgttagtgaagcataacatggcccatcctgagcatctaccagtcactg<br>tctttccgacttttcattcactggtctgcttttcaaaccaacccaatagtaccatagatagttttgggttttttggggggtttttttgtttgttttttta<br>aatgaacatagaaattgacccttctggccttaaagcttgaaacttatatttgttttatctgagtccctttctcagtaaccaccttcaggcctctcaaaaa<br>aaagtttcaaagaactgaaactctccagatcaccatatccagacaatgagatgccagacccctcaggacccctcattcattgtgattgcttccttgcccc<br>tc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	145662616	145662617	1001326	0	-	pAlu6-107487595; RIP_Alu_chr6_018_01	NA	NA	SINE	Alu	Ya1	aggagttgataccattccttctgaaactattccaatgaatagaaaaagagggaatcctccctaactcattttatgaggccagcattatcctgataccaaa<br>gcctggtagagagacaacaaaaaaagagaattttagaccaatatccctgatgaacattgatgcaaaaatcctcaataaaatactggcaaaccaaatccag<br>cagcacatcaaaaagcttatccaccatgatcaagtgggcttcttccctgggatgcaaggctggttcaacatatgcaaatcaataaacataatccagcata<br>taaacagaaccaaagacaaaaaccacatgattatctcaatagatgcagaaaaggcctttgagaaaattcaacagccttcatgctaaa<font color="green"><u>AACTCTCAATAAA<br></u></font><font color="red">GGCCGGGCATGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGATAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATAGCCAGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTCAGGAGACTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAGGCGGAGTTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AACTCTCAATAAA</u></font>ttaggtattgatgggacatatctcaaaataataagagctatttatgacaaacccacagccaatatcatactgaatgggcaaaactgg<br>aagcattcccgttggaaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctggccagggcaatcaggcagga<br>gaaagaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaaccccatcgtctcagcc<br>caaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaaagtgcaaaaatcacaagcattcttatacaccaataacagacaaa<br>	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	159586767	159587074	1001327	0	-	pAlu6-159500102; RIP_Alu_chr6_159_02	NA	NA	SINE	Alu	Ya1	aagcccctcacatgtgaactcccctgttcatcagtcttcattcctccacctcctccatcttgcttctggaatattctagaagagggtaatttcctacctc<br>ttctacatcccaacttggcaaactctaccaatgagagttccttgtgcttctccacttcctactgagttcccacccactctcactgactcaggagataaat<br>cagatttcttaatttgcataggaaatttggaaacatatgccaatcattgcaaatttccctttacagattgggctgtactaaccaatagatctattttgac<br>tacagaattatactttaaatgtaatataaaatttcagatgtgatttttggaaaagccaggaaaccctggttagaagaactattaa<font color="green"><u>AATTACCATAATGAC<br></u></font><font color="red">GCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACCTGGT<br>GAAACCCCGTCTCTACTAAAAAAATACAAAAAAAAAATTAGCCGGGCGTCGTGGTGGGCGCCTATAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCAAGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AATTACCATAATGAC</u></font>taaactgatattatgagcataagtaacatatgagtgatttaagaaaggtgagtgatttaagcataaaaggcatcttc<br>acctccattatcagggtagtttaagcagaagtcttttgggaaagatgtgatggaattgattatactatttctctacttgggagatacagatgtagctgta<br>aaaaggagaacatctcactgtagctgataaaatcttgaggcaaaaggttttatagctaaaaaaaaaattgtaggaattcctttcctccctttgacctgaa<br>gcccacagcaattaaatagaactctctaaacttaatgcaccctcaaaagggggcaaggtggggaaaacaggaagaagtgactagtggatgatttcccaga<br>tgtcttct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FNDC1:NM:032532:14/23	
0	chr6	160901923	160902195	1001328	0	-	pAlu6-160815263; RIP_Alu_chr6_160_01	NA	NA	SINE	Alu	Yb3a1	atatggaatagaaaaagggcctgtatatccaagacaacctaagcaaaaagaacaaagctggaggcatcatgctatctgacttcaaaatatactacaaggc<br>tacagtaacaaaaacagcatggtatggtactggtaccaaaacagatatatagaccaatagaacagaacagaggcctcagaaataacaccacacatctaca<br>actattggatctttgacaaactggacaaaaataagcaatggggaaaggattccctatttaataaatggtgttgggaaaactggctagccatatgcagaaa<br>actgaaactggatcccttccttacaccttatacacaaattaactcaagatagattaaagaattaaatgtaagacctaaaaccataaa<font color="green"><u>AACCCTAGAAGAC<br></u></font><font color="red">ACTTTGGGAGGCCGAGGTGGATGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTAACACAGTGAAAGCCCATCTCTACTAAAAATACAAAAAATTA<br>GCTGGGTGTGGTCGTGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAGCTGAGGAGGTTGAGCTTGCAGCAAGCCAAGAT<br>TGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCAAAAAAACAAAAACAAAAACAAAAAATCA</font><font color="green"><u>AACCCTAGAAGA</u></font>aacataggcaatacc<br>attcaggacataggcatgggagaagacttcatgactaaaacagcaaaaccaatggcaacaaaagccaaaatttacaaatcagatctaattaaaataaaga<br>gcttctgcacagcaaaaaactctcatcagagtgaaaaagcaacctatggagaaaaattctgtggtctagccatctgacaaagggctaatgtttagaatgt<br>acaagcaacttaaacaaatgtacaagaaaaaaaaaacaaccccatcaaaaagtgggcaaaggatatgaacagacacttctgacaggaagacctttatgtg<br>gctgacaaacatgaaaaaagctcatcatcactgttaattagagaaatgcaaatcgaaaccacaatgagatac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LPA:NM:005577:29/40	
0	chr6	170856771	170857070	1001329	0	+	pAlu6-170690219; RIP_Alu_chr6_170_01	NA	NA	SINE	Alu	Sg	cagtaaaatatttgaagagatgtattctgagccaaatatgagtgaccacggcccttgccatagccctcaggaggtcctgagaacatgtgtccaaggtggt<br>cggggtacagcttggttttatgcattttagaaaggcatgagacatcgatcaagtacatttaagaaatacactggtttggtccagaaaggtgggaccaaag<br>caggaggagaggggcgcttccaggctataggtaaatttcagtgagtttgtctaaagacctgggatccatagaaaggaaattttcaagttaagataaaaga<br>tggtggagaccaaggttcttttgaagtcttatagaggctgtcctcagagacaatagatggcaaatgtttcctattcagatctttaaaag<font color="green"><u>GTGCTAGACTT<br></u></font><font color="red">GGCCAGGCACGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCCAGGTGGGTGTGGATCACAAGGGCAGGAGTTTGAGACCATCCTGGCCAATGT<br>GGTGAAACCTCATTTCTACTAAAAATATAAAAATTAGCTGTGTGTGGTGGCGGGCGTCTGTAGTCCCAGCTACTCAGGAGGCTGAAGCAGGAGAATCGCT<br>TGAACCCGGGAGGCAGAGGTTGCAGTGAGCCGAGATCATGTCACTGCACTCCAGCCTGGGCGACAGACTGAGACTCCGTCTCAAACAAAAAAAAAACAAA<br></font><font color="green"><u>GTGCTAGACTT</u></font>tcagttaatctctttaggattgggagggcctggaagaaaaatatctagctatgttaatagagattctttacagatacaaattttccccc<br>acaaaggacagctttgcagggccatttcaagatatggacaaaaaagcctatgttttggggtaaaatattttgattttcttccttgtctcataatgttatg<br>acagagtcaggttggaaagtaagtcacaatatatagggttaaataaaatccatctgatgagaatttatggtttgtaggacatcactccccagacccttta<br>gatagggaatttgggtaagataaaaaaaaaaaaagtcagagcttagtcttcacttgcaagggtgcccctgtcttcctccactctccatccccaagctggg<br>	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	16902826	16903151	1001330	0	+	pAlu7-16646537; RIP_Alu_chr7_016_01	NA	NA	SINE	Alu	Ya4b	tgagcatggaatgttttcccatttgtttgtttcctctgatttctttgagcagtggtttgtagttcttgaagaggtccttcacttcctttgttagctgtat<br>tcctaggtattttattctttttgtagcaattgtgcatgggagttcattcatgattttgctgtctgcttgcttgttgttgatgtatagaaatgctagtaat<br>ttttgcacatagattttatatcctgagacttcgcttaagttacttatcagcttaagaagcttttggggttttctagatatagggtcatgtcatctgcaaa<br>caaggataatttgacttccttaattcctatttgaacacactttatcttttctcttccctggccagaactttcaatactatgttgaat<font color="green"><u>AGAAGTGATGAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAGTGATGAGAG</u></font>gagggcatccttgtcttatgtcgattttcaaggggaatgcttccagctattgcccattca<br>gtatgatattggctatgagcttgtcaataatggatcttattattttgatgtgtgttccttcaatacctagtttattgagagttttaaacataaagggatg<br>ctcaattttattgatggccttttctgcatctattgaaataatcatgtggtttttatctttagctctatttatgtgatgaattacgtttattgatttgtat<br>atgttgaactaaccttgcatcccagggatgaggtcaacttgatcatgatgtttaagctttttgatatgctgtggattcagtttaccagtatgctattgac<br>aatttttgcatcaatgttcatcaaggt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	27749914	27750248	1001331	0	-	pAlu7-27491577; RIP_Alu_chr7_027_02	NA	NA	SINE	Alu	Yb7	ggtaattttgttatgtgtgataatataattatggtgattctgtgtttttctagtctttatcatttaaagatactaaactaggccgggtgcggtggctcac<br>gcctgtaatcccagcactttgggaggccgaggcgggcggatcacgagttcaggagatcgagaccatcctggctaacacggtgaaaacccatctctactaa<br>aaatacaaaaaattagccgggcgaggtggcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaaccctggggggcggagcc<br>tgcagtgagctgagatcacgccattgcactccagcctgggtgacagcgagactccgtctcaaaaataaaaaataaataaaaataaaa<font color="green"><u>AATAAAGATACTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATAAAGATACTA</u></font>aactaactgtaagtgaaatgtcttgatgtctaagatttgctttaaaaactcc<br>aggggaaaaaattaatgttagagggggtaataaaacaagattagtaaagtgtcggttcattttactgttcattctcctttgtgtatgtttgaaaatttct<br>gtaatagtaaaaccaaagcaaataaagaaatgaaacagattagtaacactccacatatgacccactgtagcagaaacactgcattttagaatatgaacgc<br>tttgtacccttagaagtgttgtaattcaggtaatggttgatagagttactgaaagtttttcacatcttcagctaaaaaacctttagaattatctccaaac<br>tttaatccgataggacacacaaacatatgaaagga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TAX1BP1:NM:006024:1/17	
0	chr7	47861717	47862022	1001332	0	+	pAlu7-47601872; RIP_Alu_chr7_047_02	NA	NA	SINE	Alu	Ya5	ccttagccattgcctgttgatgggtcttctgctggagcaggtatagaggttgaggcccacaactccaccaatcttggggaacaaagaccatctcagagca<br>aatgacagcaagcaatggacttaagtgagaaaagcagcaaaccaaagtatcgtggtgctgctattacacttacataaaattatatgcctgatattagaag<br>ctagcatacaaaaataaaccagttttactagtcaggatggcaggattggagtgaatattatgcttcatttgcatcattcttattaaaattaataatttct<br>aaagtattttgaagtattttttattttaaaagctaatgcaaaagaaatatctgctcattgtagataatcaggaaggtat<font color="green"><u>AGAAAAGTATATGCAAGAGTG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTATAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGAAAAGTATATGCAAGAGTG</u></font>aagaatagctattctatagtcccattgctcatagaaatcatatttcaggatgttgagtatcaaattttgctat<br>gtaatagagtacatatttggcagacaatttagttgtctatatgtatatctatatatttttttgacacagagtcttgctctgtcgcccaggctggagtgca<br>gtggtgtgatctcagctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggcacgtgccacca<br>cactcggctaatttttgtatttttagtagagacgggtgtttcaccatgttggtcaggttggtctggaactcctgaccttaggtgatccactcgcctcggc<br>ctccca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PKD1L1:NM:138295:28/57	
0	chr7	23330824	23330825	1001333	0	-	pAlu7-86696097; RIP_Alu_chr7_131_01	NA	NA	SINE	Alu	Yb3a2	atactgtaaacacccctacataaataaactagaaaatctagaagaaatggataaattcctcaacacatacaccctcccaagactaaaccaggaagaagtt<br>gaatctctgaatagaccaataacgggctctgaaattaatagcttaccaaccaaaaaaagtccaggaccagacagaatcacagccgaattctaccagaggt<br>acaaggaggaactggtaccattccttctgaaactattccaatcaatagaaaaagagggaatcctccctaactcattttatgaggccagcatcatcctgat<br>accaaagcctggcagagtcacaacaaaaaaagagaattttagaccaatatccctgacgaacatcaatgcaaaaatcctcaataa<font color="green"><u>AATACTGGCAAACCGT<br></u></font><font color="red">GGGCGCGGTGGCTCACGCCTATAATCGCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACAAGGTCAAGAGATCAAGACCATCCTGGCTAACATGGTGAA<br>ACCCTGTCTCTACTAAAAATACAAAAACTAGCCAGGCGTGGTGGTGGGGACCTGTAGTCTCAGCTACTCGAGAGGCTGAGGCAGGAGAATGGCGTGAACC<br>CGGGAGGCGCAGCTTGCAGTGAGCCCAGATAGCGCCACTACAGTCCGGCCTGGGCGAAACAGCGCAACTCCGTCTCAAAAAATAAATAAATAAAATAAAA<br>TAAAATAAAATAAAATAAAATAA</font><font color="green"><u>AATACTGGCAAACCGA</u></font>atccagcagcacatcaaaaagcttatccaccatgatcaagtgggcttcacccctgggatgc<br>aaggctggttcaacatacacaaatcaataaacgtaatacagcatataaacagaaccaaagaaaaaaaccacattattatctcaatagatgcagaaaaggc<br>ctttgacaaaattcaacagccattcatgctaaaaactctcaataaattaggtattgatgggaggtatctaaacataataagagctatttatgacaaaccc<br>atagccaatatcatactgaatgggaaaaactggaagcattccctttgaaaattggcacaagacaggatgccctctctcaccactcctattcaacatagtg<br>ttggaagttctggccagggcaat	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:IGF2BP3:NM:006547:10/15	
0	chr7	132758231	132758544	1001334	0	+	pAlu7-132510000; RIP_Alu_chr7_132_01	NA	NA	SINE	Alu	Yb10	tgcttaaattagatgggagccagtgaaattatagtcaaactgcatgaagctgattttagaaccacattttcttaaaatggaggttatgtaggttacatgt<br>tttactggctcatggagctcttcaaaatgacccagttcagaatgacattcaacttagagctgattgaaatgggcattggtggaaaatcccttggggattt<br>gtggagcaattaaaaataacctaggaatctaattctttttaataatagaaaaaaaatctgtagttagaattttagagaagtatgtgaaagttttatctta<br>ctacagaaattatgggaaatgcttactttttaaaaggagaaagggaaagaatctcatgttgaaaattgtcattaggtaaagt<font color="green"><u>AATAGAATTAATGGAGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AATAGAATTAATGGAGCA</u></font>atccaaaatgagctaaataagtttctttgtgagaattcttctagagattaattctagaattcttctag<br>agacttcataatatatggtaaaactaatattgctgcttagatattctgtgtcgtcttttgtcctcactttaggtaagcaatatgtacgccatagcactct<br>ctatcttactttacatcactttgctcatttggtgattgtgtaggtgtgagtatgtgcatgtgtgtagacttttgtcagtttccttcctgctaaattttaa<br>gctcattgaaagtaagaaccatgtgattagcttattattattatgtaccctgtacctagtgctgttcttggacataatagtgagaggtgacaacgtgcta<br>gcagccctcggtcg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:EXOC4:NM:001037126:7/10	
0	chr7	142570756	142570757	1001335	0	-	pAlu7-144624675; RIP_Alu_chr7_142_01	NA	NA	SINE	Alu	Yg6	atcctaaatatatatgcatccaatacaggagcacccagattcataaagcaagtccttagagacctacaaagagacttagactcccaaacaataataatga<br>aagactttaacaccccactgtcaacattagacagatcaacgagacagaaagttaacaaggaaatccaggaattgaactcagctctgcaccaagtggacct<br>aatagacatctacagaactctccaccccagatcaacagaatatacattcttctcagcaccacacaacacctattccaaaattgaccacatagttggaagt<br>aaggcactcttcagcaaatgtgaaagaacagaaattataacaaactgtctctcagaccacagtgcaatcaaactagaactcaggatt<font color="green"><u>AAGAAACTCACTC<br></u></font><font color="red">AAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGACGGGCGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCG<br>TGAATCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAATAAAATAAA<br>ATAAAAAAAAA</font><font color="green"><u>AAGAAACTCA</u></font>aaaactgctcaactacatggaaactgaacaacctgctgctgaatgactactgggtacatgacgaaatgaaggcagaaat<br>aaagattttcttcgaaaccaatgaaaacaaagacacaacataccagaatctctgggacacatttaaagcagtgtgtagagggaaatttatagcactaaat<br>gtccacaagagaaagcaggaaagatctaaaattgacatcctaacatcacaattaaaagaactagagaagcaagaggaaacacattcaaaagctagcagaa<br>ggcaagaaataagtaagatcagagcagaactaaaggagatagagacacaaaacaacccttcaaaaaatcgatgaatccaagagctggttttttgaaaaga<br>tcaacaaa	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	154572866	154573177	1001336	0	+	pAlu7-154256716; RIP_Alu_chr7_154_01	NA	NA	SINE	Alu	Yb7	aattcaattaaataagtatttattgagcccttactatgtgcacagaggtctctgtccaagcttcatttgcaaatagattcatttgacaaagatgagaagt<br>ggacatgcaaactactctaatgtaaagaaaaaggaaataaacttgtatttgaataaataaatggtgtcttcacaaatctgtggccttagtcaaaagctct<br>tcacattctcacccaatcagatcaatccattctgcctctccacttatcaatcttatttatctataaaggtccagtaaaaacgttactatatcctgtgaac<br>agtctagttttgaattcatagacataaaatcttagcacctgaaggatacgtagaggtctggcctcacccttagtgttactgct<font color="green"><u>AAGAAAAGTGGGTGCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAACCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACCCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAAAAGTGGGTGCAA</u></font>ttgatggacacctccgggatggccagagacaaggccaggaggagcccaggcaccctcccttctgggtacca<br>ctcctctggggcttgagctctccgtggctttgttgtacgtttaccccttgaccccctgctgagattataagctctatatggcaggaattgcgacttggga<br>cttttgttccacctatgtggctttacatggagtaggacctcagtaaacatttttgcacagctttattgaagtataattggtgtatggtaaactgcacata<br>cctaaagtgcacctttgatgagttttgatgtatatttatgcacctatgacatcatccccacaattaagacaatgagcatctccatcagtaaacatttttt<br>gttcattgttgt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	77797589	77797896	1001337	0	+	pAlu7-77557801; RIP_Alu_chr7_077_01	NA	NA	SINE	Alu	Ye5	tatgaagtctaaaatgatttaaagaagcaagaggtgtctttaaatgttcaatgcagaatcattttgtctccaggatccaaagggtgaacatcctaagagt<br>tcataagatcttttcatgtatccattacttctagaatattatagctttaatttattgggagatagtcttatggagattcataatggctaccatttccgag<br>agattccatgtgccatgacctaagtattttatatataataacacatctggtgagatgtttggttaaactagactaagaaaagctttaaataattctgtaa<br>ggacaacataatcatagaagactctatgatgattacagcaaatcttctgcctccatagtaatccatgtcagactagtgctgcat<font color="green"><u>AGAAAGATTCCTTCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AGAAAGATTCCTTCAC</u></font>ttatttaatcaacaagttgaatattttccatatacctggttatgaactaagccttggggatttattaacgatcaag<br>tcagacacaggttttgatctcaatgaacttattatagtcaggttggggaggcaggggctggcaaataagaatttccaattcagctgagggaggatcagat<br>aaaaataagcatctttcataaaaagcagattgtttcctgatgaaccaaaggctcagttcagagagacagagtagtacgaactgaacgaatctgacattgt<br>ctataagagtgcatatggtgcgtatacacgtgcatgtgtgtacacacatacacacaccatagaacacacacacaccacagaatactatgcagccataaaa<br>aatgatga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MAGI2:NM:012301:9/22	
0	chr7	82784414	82784716	1001338	0	+	pAlu7-82544626; Yb8NBC5; RIP_Alu_chr7_082_02	AAGGTCTAAGCGCAGTGGAA	TGTATGCAGGTTGCTTGCTC	SINE	Alu	Yg6	ccaaacaagtgatacaataactatgagattattattcttcctttcaggaaaaaaaaaaagaagcaatggcacgtaaacaaacttctccaatatgttaatc<br>tgagaaggagaaatgagaatctgggttggggaacaagtttgtctaaattcaaagcccaaatcagttctactaataaatagtgggattgagcattctaata<br>aaggatactcccgtgttccatcctggagattaatgcaagataaggcaggagaataaagcagatagcaatcatatttcatgtttgctattgataaaagcta<br>ataggaaatcttataagtatgtggctgtagtatggatttcaagactggaccccaagaagagtgtgtcatcccgtctatctgctag<font color="green"><u>AAGATCTGAACAACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCTCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAGAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGATCTGAACAACC</u></font>atggccatccctctgaaagaccagtacctgtttctgcaacatttggagagaaaagcagaacagaataaaaattttctgcagg<br>aaatcagatccttaggagaatgggagggaagctatcggtgctaaggtaagtgcaaccagctcttgatcccagttttaccaatcagttaaataacttctta<br>atcagagatttattgaccaggcttgacctccccagagtaaagctacagtaagacagtaaactcactgtatgcaggttgcttgctccaagtctatcgcttc<br>tgcaaaaatatcttccttctgatcagtctacagagcccccagggtttttttttaatgtgttttgtacagagttcttaattgcagattgttttattagaat<br>ccc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	503	167	NA	intergenic
0	chr7	31037116	31037431	1001339	0	+	pAlu7-30778761; RIP_Alu_chr7_030_01	NA	NA	SINE	Alu	Yb7	ctcagtgcaatgagaagccatttgaggaactgacccagaagcgactctagaacaatgattctcaatcgggtgttatcctcgcaactcccagggattttta<br>gcaatgtcaacagagggtgagggtaggagtggtactggcagctggtgggtagaggccagggacactgctaaacattctgcgacgcacagggcagacagct<br>ctccactcccaacaaagaattatctgaacccaaatgtcagtaataccgaggttgagaaactctgctctagatgttggtgtcccccgggtccttgctcttt<br>tagaataacccagggtcactgtactccagcctgtggctctttctatatatactctgggttcaaattttatcttcaccgcttgtccaa<font color="green"><u>AATGTCAACGGTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AATGTCAACGGTG</u></font>cagaggttgagaaactactgtacaggaagaagggaagcagcacaactacttagacctgtgctgaatgcagt<br>agccactggccacatgtggcttttgaatacctgaagtggtcgggcgtggtggctcatgtctgtaatcccagcactttgggaggccgaggtgggtggatta<br>tttgaggtcaggagtttgagaccagcctgaccaacatgacgaaaccccatctccactaaaaataaaaattagccgggcatggtagtgtgtgcctataatc<br>ccagctacttgggaggctgaggcaggagaactgcttgaacccgggaggtggaggttgcagtgatggtgccactgtaccccaggctgggtgacagagcaag<br>acttcatctcaaaaaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	136485007	136485291	1001340	0	-	pAlu7-136236560; RIP_Alu_chr7_136_03	NA	NA	SINE	Alu	Yd3	tccaaggattgtctgatcctgtagaggtgtctgccttcattttattctgtttttaactaggctgtttcacaatgctgacaagaagttaacctgtagaaat<br>ccaatagcaatgcaaatgattcctgtccatagaaatccaaattatgtctggtggaatgcaattgattatcaatctgtggatattaaatatgaatcagttt<br>tattagtttttgcatccattgtaaatgtttcagcatttctaataagactgagtgtgtgatactttgagtgctttttgaaatagttacagcatctatgatt<br>tctcttattaattaatgagttaaataaaatcttccaaatcttccatgtgtttacatctgtatgtcatgtttatatgtcttttt<font color="green"><u>AAGAATTGTCCTTTGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTCTGGGAGGCCGAGGCGGGTGGATCACAAGGTCGGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGG<br>CGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGGGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTGTCCTTTG<br>TC</u></font>atcctttttgtgaatgccactttaatttagttagaagaaatttgttcgttgcagcaccaaagggttctaactattgcatagagtacctttcttgcttg<br>ctttttttgtctgttttttttttttttaactaagacaatctacttgacaaaacaaaccatcatgagaaggaggttttgacactttaagcttagaataaat<br>tgaagtgtgtctataaaaacatgaaatattctttttgaaagtaccatataaatgctagtgcctattgctaatgaacagaattgaatggtattaagagaaa<br>agttattaagcttcagtgatactccttcatattgtgtgtaaccaccacaggtattgctttctttttttaagtcaatgattttgag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	4209473	4209800	1001341	0	+	pAlu8-4372545; RIP_Alu_chr8_004_01	NA	NA	SINE	Alu	Ya5	tctctcttgtacttcataaatatatatacctactaaatgcccacaaaaatttaaaaaataagttattgtaaaaataagtagttaattaacattaaaaatg<br>ctttacatctcaaaggggcagaaaggattacaactttctttaagccaaggggaacattaaggtcctcttgataagactagggcccttaaaataaagagaa<br>atcttacctaagaaaacagctttcccctcttcagttcctgtttactgttatagcttccattattgccctagtccatacaagattcatttgtttttcatgt<br>tttttccaaagtaatctatttttagtaatacaatttcctctcttgctttctagaagactctacattgtcagttaaaacattttttaaa<font color="green"><u>AAGATAATCAAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGCGCGACAGAGCGAGACTCCTTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATAATCAAT</u></font>ataatacactgcctgttactaaaatcataaccaaatattgaacctaaatcaaagcacccg<br>acaaaaacgtgcaagggatttaatatgtttaaattttactcgaaaacatttatattctaatggaactcagatgatattttatgaaatatgttctctttca<br>attgtgaggacattttccatattcatcagttgtaatggcaagtttacaagaaaaagtttaaatactttaagtgtgtagacatatagtgaactaatataca<br>gcatatcatatttttattttgaatttggtagttttgctcacaataaatatttgcaccttgtctatatataaaaaaagagttttgttaatgcttaagtagt<br>ttggaatgtaattttactttcttaaaga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CSMD1:NM:033225:3/70	
0	chr8	11971716	11972025	1001342	0	+	pAlu8-11805240; RIP_Alu_chr8_011_01	NA	NA	SINE	Alu	Y	cttcacagagaagcagcaggcttgaaaataatgcccagattcttaacaccaatgccagaagaaacagaatggacctcattcatgaaaaattggtctgcct<br>gttgactccctgtaatatattctcagaagccttgttttttcacctaacctggacctcacgcagtggtaaagctgctacttggtgtggggcggtattagaa<br>aacatttacagaaaaacattataaatactgtcgcctgaacactggggaaaacaatagactaaacaaaagtcttcagaggaagtcctgggaatgagatgct<br>ttggggaatgtgggctttgaaaagcttcaacatatttctgagaatttgcaaaactgtgtatgtcaaggctgtgtgcatgtttagtaaa<font color="green"><u>AACCTGGGAAAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AACCTGGGAAAT</u></font>ttctaccttccctgcacaagcagaaagtgtaagccaaggcagagtcgtaatctgtctgtctgagtgttgaaagcaggg<br>cccaacacatacacaaagcccctctgcaagttccaaacacatatggaaatctttgtcaaattattagctgacctctaagctaatggaaaaaatattttaa<br>tcgacataggtgacaaaaaatagagaccaaaaagtttattcagaaaagatactgaacaaacaaataactacaatgaggagtacaacgtggggaggacgga<br>gaatcttatttctagagtggccacattatcatgtttaaaatgtctggtattcaaaaaaagtatgagacatgcaaaaagaaaaaacccaagaaagtatggc<br>acatggaaaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	12573088	12573401	1001343	0	-	pAlu8-12303806; RIP_Alu_chr8_012_01	NA	NA	SINE	Alu	Yb7	acttgttatctccacttggctgtctgtcttgcattgacctcatcttaccttgcctctcctgatttcctcttctgcctgggctcaccacgtcagattcaca<br>ccaccatccacccagcttccaaaacacctgggcctcctccttcattcctccctctttctcagtcaagttagtctactgtctcctctccatcctcactgcc<br>acagccttggtccagccaaccatcttgtctcacttggtgtattgcagcctcctacctggtctactcacctcccactctcctccagccagactgctcttgt<br>tctagcacaaagtggatcattactcccctgtctaaaaacatctactgtctccctttgtctacaggatagacacgacaaagagccttt<font color="green"><u>AAGATTTGGCTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGATTTGGCTCC</u></font>aacttacctctatgttagtcactttttataattatatgaacatctctcagctcctcaccctctcacgtctcga<br>tttttgcacatgctcttccctctgctgggaatgatcttccacacctctcctatcgacctggctagttcctaccattttctagtcttcaactgaggagtcc<br>tgtggtggagagggatttctcacaacctgatatagattgcacgcccacccacctccgggctttttcttttttctttcttttgttttttttgaaggagtct<br>tgctctgaccatgcaggctggagtgcagtggtgcgatcttggctcactgcaatctccaccacccgggttcaagcaattctcccacctcagccttctgagt<br>atctggaattacag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	31690798	31691136	1001344	0	-	pAlu8-31427348; RIP_Alu_chr8_031_01	NA	NA	SINE	Alu	Yb7	atactcatcaggattcaaaaggaaaaatggaggaaaaaaagtaaatgtgctttatccaccttaccattctaaaccctggctaattttatagcctaaaaat<br>ccacacttcattttaaactacatacatgaccaccaatacaaaaaaaatcttaataaaataaataaaattatcccaaaatgtcagttttcaaattacagta<br>caaacaaggcatcagaataaataaccttccacttgctgggtattacacaaaagcaacaaagaaaagaaaaaaatgaggaaaaaaataaactccttaatca<br>taaaagttagaacagatataatgttcacacttccaagcatacatagtctcccaaaggcaactgatattgtacagaaaaatcattat<font color="green"><u>AAAGAAACAGAGAA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAACAGAGAA</u></font>tagttggttcttcaagggcaaatttccaaagacactggcaaaaatat<br>tttctcaacatgtgtggcaccctgcaatgctaaaattgtatttttggtatactcaactatcctgtcaatagggcaaaggtctgatagaagcaaaaggaaa<br>taaattaaggagaaaatgaagtgaagagtgaggttaagtagcttaccattaacagttctcagaaaataccaacaaaaatacaccaccatggaaaagaagt<br>tacaataacagtagaatataccaatatgcaacacctcaccatgtgttaaaaattagaaggagtggccaggcgtggtggctcatacctgtaatcccagcac<br>tttgggaggccgaggccggcggatcacgaggtcaggaga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NRG1:NM:013962:1/5	
0	chr8	47500484	47500805	1001345	0	-	pAlu8-47071828; RIP_Alu_chr8_047_01	NA	NA	SINE	Alu	Yi6	aagcacactgaggcctacagtgaaaattcgaatatcccatgataaaaactacaaagaaagtatctgtgaaactgctttgtgaagtgtggatttacctcac<br>agagttaaaactttcttttaattcagaaggttggaaatactctttttgttgaatctgtgaagggacatttaaaagtgtaatgtggcctatagtgaaacac<br>caaatattccatggtcaaaacaagaaacaagctatttgtgaaactgctttgtgatgtgtggattctgctcacagagttacacctttcttttgagtcagga<br>ggttgaaaacactgttttcccagaatctacaaagggacatttaagagcaccctggggaatatagtgaaaaacaatatatcccacaataa<font color="green"><u>AAGCTAGAAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTTCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGCTAGAAAG</u></font>aagctgtctgtgataatgcttcagatgtgcagattcatctcacagagttaaacctttcttttaatta<br>accaaatgtgaaaacatgctctttgtagaatctgtgaagggatatttcaaagcccactgagggctatagtgaaaaactgaatatcctgtgataaaaactg<br>aaagaagctgtctgtgaaactacgttgttatatgtggattcagctcacaaagttaaatctttgtttttattcagcaggttggaaacactgtttttgtaga<br>atctgcaaagggacatttaaaagcagacattggcctacagtgaaacattgaatattccattataaaaactagaaagaagctatctgtgaaattgctttgt<br>gatatgttgattcagctcacag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	49081982	49082285	1001346	0	-	pAlu8-48642507; RIP_Alu_chr8_049_01	NA	NA	SINE	Alu	Y	aaaagatttttcacatcccttgtaggttgtattcctaggtatttttattctctttgtagcaattgtgaatgggagttcactcatgatttggctctctgtt<br>tgtctgttattagtgtataggaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttgtcagcttaagaagatttgggg<br>ctgagactatggggttttctaaatatacaatcatgtcatctgcaaacagagacaatttgacttcctcttttcctaattgaataccctttatttctttctc<br>ttgcctgattgccctggccagaacttccaatactatgttgaataggagtggtgagagagggcatctttgtcttgtgccgg<font color="green"><u>CTTTCAAAGGGAATGCTTTT<br></u></font><font color="red">GGCCGGGCATGGATCCCAGCACTTTGGGAGGCGGAGGCGGGCGGATCACGAGGTCAGAAGATCAAGACCATCTTGGCTAACACAGTGAAACCCTGTCTCT<br>ACTAAAAAAAAAAAAATACAAAAAATTAGCCAGGCATGGTGGCAGGCCCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCG<br>GGAGTTGGAGCTTGCAGTGAACCGAGATGGCGACACTGCACTCCACCCCAGCCTAGGGGACAGAGCGAGACTCCATCTCAAAATAAAAAAAAATAAAAAA<br>TAAA</font><font color="green"><u>AAGAATCCTTCA</u></font>ttcgcccattcagtatgatattggctgtgggtttgtcgtaaatagctcttattattttgagatacattccatcaatgcctagtt<br>tattgagagtttttagcatgaagggctgttgaattttgtcgaagccttttctgcatctattgagataatcatgtggtttttgtcattggttctgtttatg<br>tgatggattacatttattgatttgcatatgttgaagcagccttgcatcccagggatgaagccgacttgatcttggtggataagcttttttgatgtgctgc<br>tggattcggtttgccagtattttattgagtattttcgcatcaatgttcatcaggggtattgagcccacgtagccaaggcaatcgtaagcaaaagga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	89461335	89461631	1001347	0	-	pAlu8-89060843; RIP_Alu_chr8_089_01	NA	NA	SINE	Alu	Ya5	gtaggaagaggaatgagagatacctttagaccaaaaagtcagtcagtgatggaaatctgaaaccaaaagaaggtgatttgggagagggaggcagacagga<br>atgggtaccggtaaggtgagaaataatgtcacctttcatagtgagcggtttttttctccaaagtaattaatgagaatcttaattttttgaatgaattctt<br>tacttatgtaaaattatatcgaaatgctatgctatttatcagcctagtgatggataacatggcaaaaaggatttaagggctcaggatcatgaaaatttaa<br>atatagttgtttgaatatatgcctgtcttaaggtcaataacaggaggatacttgctgatttttttcacacaagttctgctttatattatt<font color="green"><u>AAAAAAAATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AAAAATTG</u></font>gacagtgacatttgacaattccataaaacatgcaacaatttagtggcatgtgaagtgctctaaaataagaatagacgcatagcaaaaacgtt<br>atattgcatgaaaaattatatatatgtaaactaaatataaattatattacattgtttcttggagttacttgaataattttcccattatttcttgagagga<br>atactgatacattaattaattaatgaatatgaaatataatccagtcttaataaatctagttacagtacaaatgcataataattctaataatcacctcttg<br>gtattaatatgactcctgtgcttacaggtcttctttggattgcacttttgaaacctgatgaagccccactttcctatggggtaatgaagtctaacatg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	92222046	92222356	1001348	0	-	pAlu8-91821562; RIP_Alu_chr8_092_01	NA	NA	SINE	Alu	Ya4	atgaggtcatatggattagagtgggccacaatccaaggactggtatccttctaagaagagaaaacaaagacatgtcctttaagccccagtttgtgatatt<br>ttgctatagcagcctcaggaaactaataaaacaagcatcactgtttcctgcactaactgaacaaccgacagtgttgccataaattgtccagtgtccacta<br>aaggccatacttcagatatgttattctctgaaagacagatacaaataaaagacattttatttcagatcatccttgttctcaaaggcttgttcattcaaaa<br>tccaattctaattccagcaataaataaaaatgtcagaaaaagtgaacacacgataaagaaaaggtagaagaacacccaatgattaaa<font color="green"><u>AATCACATATTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AATCACATATTGA</u></font>agaatattcatttaaggaaagtgcttaatatataatgttaaatgaaaatgacaaagcaagacacgtatttctttat<br>gcagtatacattgaatttttttaatgagaatataaaaatgagattcttgaagaaaacaataaagtgtagtctctggaaggtaaacttaaagacaccttac<br>attttactctttctatacttatttacttattttctacaatgaatgaattaccagaaaaatgctacttacaaaaggataaatgaagacaacatcttaaatc<br>ttaatacccattcattcaagaagcagaggacacttgcaaactaatacaataaataatttggtatgtctcagacaggaattaggtatcaaaaaattgtatg<br>tgagaaaactg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LRRC69:NM:001129890:5/8	
0	chr8	98664583	98664907	1001349	0	-	pAlu8-98264106; RIP_Alu_chr8_098_02	NA	NA	SINE	Alu	Yb7	cctgaatttctagattcatttattattttttgtcatgttcattttctcttcttggactaatagtcatcccacttttttttgttttttccttgcctaaatt<br>ctatgcattttaaaaaaatggatgaaccccagtctcacagttatgtagttgaaggaagtaggagtattttaatagtcttttaaagtaattgggggatatt<br>ctttgctattatgataaaaccaatggtagcttcttaaaagttagttgcaatataaaatctgaaaccacaataaacagagtaacaagctctgttacataaa<br>acccattggcctgtcttgtactttgaattagtcttttacctatgtgtgatttggtgacatcttgcactggttcatatgcatttaaa<font color="green"><u>AATTTATTATTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATTTATTATTTTT</u></font>tttgtagaaaggggtcttgtcatgttgcccaggctggtcttgaacttttgggctcaagcaa<br>tcctcccattttggccttctaaagtgctcaaattatggacatgagccatgataagcatttttagagtcaatttaggcattagaaagccttctctgaattt<br>gctagaattgaaatgctgtctaatgcaactttttgccataacaaaatatcctatatctgtgttgttctatatggcagccattaggcacatgtgattttga<br>caacttcaaatgtggccagcatgactaaggagctgaatttttaattttaattaatttaaatagccacatgtggttaatggctagcataatggatagtgca<br>gctctagaatgaggtgggttctcct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	106739711	106740014	1001350	0	+	pAlu8-106339227; RIP_Alu_chr8_106_03	NA	NA	SINE	Alu	Ye5	cccacagtggttcaaatctaaacaaaaaataatttattttgaaaatcactaagaggtaggagactcattcatgtttttttgtgtatcagccattattctt<br>ttcattgttgaccagtgcttccattgtatgactatgccatttttttatcccttttcctattggcgaatatttgggatattttcttcacatcaacagcaat<br>ggattcttcaaaagaggaaagcagtttttattgaaagagtctggaagcctctggtgagttatggcatcaaatcaggggacattttgactgaacgagttct<br>gccagaaaaggaaggacacaagtcaaaatcctttgcttttgtatttcagtgacctttgaatcttattgaccccagtcagtcttt<font color="green"><u>AGAAATCAAAGCAGAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AGAAATCAAAGCAGAC</u></font>tgcatcactagattttcctgtaccttcagtctatctgttatcttcttgactgtctaaccaaagtgatccaaagatgaatg<br>aatttaaagattttctactggtcttggtgtgtgaatatacatggacttcttcacttttcaggtctttatttctctttgtcttattaattgccttccacaa<br>agcaatagagctatcttaaaagtactttgaaatccctggatgaaaacagccaaagccctgaaaaatatcagcattattatatcagttaataggcaattga<br>agctatgaaaggaataaccagaaagacaaatgaatggccaagaggtaaaacaattatttaaaggagaaataatgggtaacagtaaccagggttctgagaa<br>cagg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ZFPM2:NM:012082:5/8	
0	chr8	118781985	118782300	1001351	0	-	pAlu8-118381506; RIP_Alu_chr8_118_02	NA	NA	SINE	Alu	Ya5	ttgctgtgggcttgctaatgcaggagagctggactggacaataacatgcaaaggagtgatagggagatagggcttggccggtagagcaggtgccacctaa<br>aaggagaacacgatgaaactgaacatcttctcaggtatttattggcatttgatttattcttctttgaatcgtctagttgagtcacttgttcattttttct<br>attttattttttgagatttatgggtgctctttgtatattttgatgttttgaaatgtcacatgtgtctgtgtgtgtgtgtgtatgttgtatgtgtgtgtgt<br>gtgtgtgtgtgtgaaagaggcagagagagagataatgatactatatatctctatatgaattgtattagtttgctcaggctgccat<font color="green"><u>AAGAAAGTTCCATAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGTTCCATAG</u></font>aatgggcattttattttttatttttttaagatggagtctcattctgctgcccaggctggactgcagtgg<br>caccatctcggcttactgcaaccttcgcctcctgggttcaagcgattctcccacctccacagtagctggcattagaggtgcctaccaccatgcttagcta<br>atttttgtgtttttagtagagacggggtttcaccatgttgttcaggctggtctggaacttgtgacctcaagtgatccacccattcggcttcccaaagtgc<br>tgggattataggcgtgagccactgcgaccagtctgagtgttttaaactcagaagtttatcttcttacggttctggaggctagaagtccaagatcagtgcg<br>tcagcaagtttggttt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	121750867	121751172	1001352	0	-	pAlu8-121350381; RIP_Alu_chr8_121_02	NA	NA	SINE	Alu	Yb7	catatttcgtttgtgtcctaaagcacataataggtgctcaacaaatgtctgacaatagactagaggaatgtatggataacaagaaagctagacctatact<br>ttctaggacatgatacatttttatgagttgaaaggaaccttagagaaaaatttatactaaagtcaaattgagaaggtattccaggctacaacagtgactt<br>agcatcaaaatgagacaatgaatgatgtcttgtcgttttctagcttcttgctactcaaagtgtattacagggacaccagcagcatcacatcacctgggga<br>tttgtaagaaatgctgagtttcagaccccactccaggcctgtggaatcagaatctgcattttaatatgattcatcccattacagttt<font color="green"><u>AACAAGCATTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AACAAGCATTTTC</u></font>attttgaatagatcactgagctttcaccaaactaatctctcatcctttagttgaatgtcctttttttgttattttctagag<br>atgaaattcaatttcttagtgaatccacatgtgtgaggaatttactaaggaggggatggtgctagtgaaattaattaaattcactcagtgccttggaaat<br>aaagcttgaacaaaggatcagaaaaagttcctttagtgcagatgggataactgttttctcatttagaatagcgcccactctggctcagatccaggcaaaa<br>tgtcaactgctccaactcatgaaaggtcaatgaattgcctcaaacattttatgaaatgctcatctcaaagctggagcccccatggagatggttgatggtt<br>gtatgc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SNTB1:NM:021021:2/7	
0	chr8	132237484	132237779	1001353	0	-	pAlu8-131839072; RIP_Alu_chr8_132_02	NA	NA	SINE	Alu	Ya4b	gcaggcaagaaaagagcttgtgcagggaaactcccgtttttaaaaccaccagatctcatgagactcattcactatcatgaagacagcacaggaaagacct<br>gcccccatgactcaatcacctcccactaggttcctcccatgacacatgggaattgtgggagtcacaatccaagatgaaaattgggtggggacacagccaa<br>aacatattagctagtgtgtcttggaaaagtggtaaaagactaggtctgcatgactttgaattatggatgtccttgttgtcaggtatttatattcattaac<br>aagcaggttagaaccatttacacaataaaaggcttccttccagaaagctcccttccatgaagctctgtccacattttgtctct<font color="green"><u>AAAAGAAAAGAAGGGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTCGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCATGCCACTGCGCTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>GAAAAGAAGGGAAG</u></font>gaaaacacgactgttttttggtcaaaagaagttaaagccaaaagacggtcattgatttggttgggtatgatcagtgaagtctggga<br>tttcaggggtccttgcgtggctggaactggttaaagaacttctataatccctgagaggaggtggacaggagtctaggtatgaggatggtgggtttcacag<br>cagacaagcgagcaggctaagcaaagacattagttgtactccataaaaaaaatcctgagcaggagttaagagacctggatcatttcaggctctaccactt<br>tgtagttacagagtcttgggaagatcattttccctctccggacttcatctttttcttctttcaaagaagcaattatacaaaaagatctccaagttcc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	138929744	138930055	1001354	0	+	pAlu8-138544858; RIP_Alu_chr8_138_02	NA	NA	SINE	Alu	Ya4b	gttcagggaactgagaattactttgtccctcacactctgctgagagctttacaggagctgacttaatacactttcctttaaatctcccaagataggcacc<br>acttaccttgttttacagatgaaaaactgagtccaaaaagctacgaattttgcctaaaattacataccaaaaaaaaaaatagaacaagcatttgcaatta<br>ggtccctttgacactaaaactcatgaactctccactgcttgatctttagaaaacaaacagatgtttgatttatggtaatatatttaatttaaatctctaa<br>aaatcactgtacttgtatttgctgtatattgagcatatgcttcctaaggtcatttctaccataagcagcacagactggcttgctctta<font color="green"><u>AAGAGAAGGATA<br></u></font><font color="red">GGCCGGGCGCGATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCAGGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAGAAGGATA</u></font>ttggggccgggcgtggtggctctggctcacgcctgtagtcccagcactttgggaggctgaggcgcgggggtcactt<br>gaggtcaggagttcgagaccagcctagccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggcatggtggtgggcatctgtaatcc<br>cagctacttgaggggctgaggcaggagaatcgcttgaatccaggaggtcgaggttgcggtgagccaagatcgcaccacagcactccagcctgtgcgaaag<br>agcaggactctgtcaaaaaaaaaaaggagagagggagagagagggccatcggggtgaggcaacatctctcgcagatcttcagctgtgactcttcaggaca<br>aatggccatggg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	144794758	144795077	1001355	0	-	pAlu8-144498249; RIP_Alu_chr8_144_01	NA	NA	SINE	Alu	Ya5	ctgaagcaagttctccagatctagctaagatggttgactaaggtggctactctaaaaagattttcagtgtggataaaaccgctttctattggaagaagat<br>ggcatctaggactttcgcagctagagagaagtcaatgcctggcttcaaagattgaaaaggacaggctgactctcgttaggggcgaatgcagctggtgacg<br>tgaagccaatggtcatttcccattccaaaaattctaggacccttaagaatgatgctaaatccactctgcctgtgttggaaatggaataacaaagcctgga<br>tgacagtgcatctgtttacagcatggtttatggagtattttaagctcactaatgagacctactgctcagaaaaaaagattcctttcaa<font color="green"><u>AACACTACTCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAGAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACACTACTCAC</u></font>tgacaatgctcctggtcacccaagagctctgatggagatgaacagggagactgatgttcttcttttgc<br>caacacaacgtgcattctgcagcccctggctgggagtcactccaactttcaagtcttattaagaaatatgtttcacaaggctgtaggtgccataatgatt<br>cctctgatggatctgggcaaagtcagccgaaaaccttctggaaaggagtcatcattatagatgccacgaagaacattcatgatttatgggaggaggtcaa<br>aacatcaacatttggtattttggaaaaacctgattccagccctcatgaatctttgaggggtttgagacttcagtggaggaagcaactatagatgtggtga<br>aaatagcaagagagctagat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ZNF623:NM:001082480:1/2	
0	chr8	39884488	39884803	1001356	0	+	pAlu8-39506177; RIP_Alu_chr8_039_01	NA	NA	SINE	Alu	Ya5	acaaaaaaaaagcaagagagagaaacagattttgtgtgcctcatgtcttgtcatgcttcttcagaaggtgttttgattatttgcaaaaccgagtctctta<br>tcaatcaaacagcaaaggtttttgctttttgaaatcttctaattatcactttggctaaatgaatgactattattttttcattggacctatgatcctattt<br>tgatcaagtatttgaaacctttaatgtatttgagaggcttctcacaattatatttcaaaatctaaaattaagtatttttgacctcaaactaactttgaga<br>tattccaaaaagctgctgaagcttccaaaagaaataataaacaggcttatttgatatgttcattatgtaaaaagattttcaaat<font color="green"><u>AAGAAATAATATTTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGAACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCAGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATAATATTTAA</u></font>ccttttcaaaattatatttgtattgtcatgttattagtatttgctccaaaattatatgagattcctaa<br>aaattggatttgttttgttatatgttattagtcataattatgagtattatgttaaattgttgtaggtcataaaaggagaaaatgacctagttttcttgtt<br>aattccatctttaaccacggccatttttagtcttgctcacaattaatttttttatgctgatcctttttttctgaaagctctttgcaaatcctaaagtgtt<br>gtgtcttcaagaaagctcatggaaaggactgcaacaagtactcttggctgggcacagtggctcatgcctgtaatcccaacactttgggaggcagaggtgg<br>gtggatcacctgaggt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	57176937	57177233	1001357	0	-	pAlu8-56737468; RIP_Alu_chr8_057_02	NA	NA	SINE	Alu	Sg1	taccattttccattatggccaaaatacaaaaatttgacaaatataattggtgaggcatggggaccatggggaaatgcctaggcactcttggatattgctg<br>gtggaagtacagactttagggaaaataatctgggaacatctattaaaattacaaaattgctggtgtgattccatcctgtgcagctgttctcttgagcagt<br>ggtcatttatctctgtcccccttctctgccacctaagtgcgtgctgccacccgatggaagatttgatggacatggacatgagcctcctgaggccctagaa<br>ctatcttttcggttgtgaactgaaggccaacaaagattatcactttaaggtggataatgatgaaaatgagcaccagttatctttaagaat<font color="green"><u>GGTCAGTTTA<br></u></font><font color="red">AGGCTGGGCGCGGTGGCTCATGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGCATCACGAGGTCAGGAGTTTGAGACCAGCCTGGCCAAGATG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCACATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGCAGAATCACTT<br>GAATTCGGGAGGTGGAGGTTGTGGTGAGCCGAGATCGTGCCATTGCACTCCAGCCTGGGCGACAAAGCGAAACTCTGTCTAAAAAAAAAAAAAGAAC</font><font color="green"><u>GGT<br>CAGTTTA</u></font>ggggctggtgcaaaggatgaattgcacattgttgaagcagaggccatgaattacgaaggcagcccaattaaagtaacactggcaactttgaaa<br>atgtctgtacagccaacggtttcccttgggggatttgaaataacataaccagtggtcttacagttgaagtgtggttcagggccagtgcatattagtggac<br>agcacttagtagctgtggtagaagatgcagagtcagaagatgaagaggaggaggatgtgaaactcttaagtatatctggaaagcggtctgctactggagg<br>tggtagcaaggttccacagaaaaaagtaaaacttgctgctgatgaagatgatgatgatgatgatgataatgatgatgatgaagatgatgatgatttt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	72713973	72714293	1001358	0	+	pAlu8-72274503; RIP_Alu_chr8_072_03	NA	NA	SINE	Alu	Ya5	tctttcactcctccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatcataacaataaaaactaaatctggaattatgctcagttaatga<br>cagctacttctgttcatgtagttttagatgtactttattgaattacttgtgttgttttttgtaatggacatatatccttttatctgaaattatgttagtc<br>ctctttgagaattttgacagaagtagggtgagttggataatgcctaataaacgaattttcctcatttccattcagcaggacctgtaatctctgttagcag<br>tggagctgctcagcaaaggttaagcttgatagtgaacaacctctttatgtacaaaaccgtatttggtaggcctcattgctggtaata<font color="green"><u>GTTTCACTATATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAATT</font><font color="green"><u>GTTTCACTATATC</u></font>ttgatggatatttaagccacattgattttttggtatgggctgtttggaaggaatgtccgaagtaac<br>tatagatgcttagccttctttttcaaagtttctagcacctatgtcccacacacattaggaactgaatgtttattctactgaactgaaataatagagtttt<br>tcacatatttgagacttacctgttaaagagagactttgtttttttttgttttacatcagacagaagtataagaaccatgggggaatgttgttggaaggta<br>gatttgactcaatataaaaaaaaaatttagccattcagaaatcaaacaagttgcttcagaggtgaaatagtctccactgcaacatgttcaagagaatctg<br>ggggcttatttaaaaggtcat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	83167367	83167672	1001359	0	+	pAlu8-82727897; RIP_Alu_chr8_083_01	NA	NA	SINE	Alu	Yb3a1	tttctcagctgtgaggaggtctaggcctcagcaattttggaaagtcactgctgtcaaagagtctatttgagattgtagagtaaggatagattctgttatt<br>tcttgcaaattgagaaaccctttgagagtttgtggtagtaggataatgaagtagataaacctgctattccagtttctgtagcagtagccactcgtaatcc<br>tataagtagggttattagttttatggccctgcactgatggacttgagctttgaggggcacagatatgctctgctttccaccaggttagaagttaggataa<br>tacatgttacactgttaacttttagcaaactttacttttgttgaaaactttgtaagtttgggatttcaattattctttgctatt<font color="green"><u>AATAAGACCCCATTCA<br></u></font><font color="red">GGCCAGGCATGGTGGCTCATGCCTGTAATCCCAGAACTTTCGGAGACCAAGGTGGGTGGATTGCAAGGTCAGGGGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCAGGCACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGTATGGCGT<br>GAACTCCAGAGGCGGAGGTTGCAGTGATCCGAGATTGCGCTGCTGCACTCCAGCCTGGGCGATAGAGTGAGACTCTGTCTCAAAATAAATAAATAAATAA<br>ATAAAA</font><font color="green"><u>AATAAGACC</u></font>gtccatattaacttagaattggtatagatggcaccttcctgattctgtaagtactttaaggtttgactgagtgaaaacagcttgc<br>acgtttgagcagacctcactggacagcctcactggaccttttccagctcctgcagtagctcattcactatcctgcttcagagacttcgtcttaccatttt<br>ctttccctgagacatttctctctctactgtacctttttgctttactcaggtattcaaaggattggatgaggcccaccacaatagggagtgcaatttcctt<br>tactcaatctactgattcaaatgttcatttcatctaaatactctcccacaggcacacatcacataaacatatgtgatatgcatgtatatatacatatat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	108189411	108189713	1001360	0	+	pAlu8-107788927; RIP_Alu_chr8_108_01	NA	NA	SINE	Alu	Yb7	aaaagaaccataattttatttggtaaatacaagctagggccaaaacttttatggaaaatgtaatgcttcagaaaacagcatacctgcaacttcacattat<br>gggagggtccctatgataaagagtagagactggctggaggagaaagcttccacaggaagatgacagtgacaactttcagatttgggaaagtaaaagacac<br>ctggaaaaaatggattggggacttcaagcaaataaaaaaaatcttcctttctttgcacatacttaagatttgaggaacaaagggcttcaggtcctatgct<br>agcataactagcatgcacttgacggggcatcagccaaatgcaggtggagccaatgaacaccagaaaaggactatgctgggt<font color="green"><u>AAGAATGCATGAACATTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGAATGCATGAACATTGG</u></font>aaaagcacagaggaagtgggggaaagacgtctccagattctgctgtggtagtctgactcatgcgcatcagggttgtgc<br>agtgtcaggcaaattttttgccagttccatacatcaaccattgaaatgatgcaccaccgaaaccaccaattaaaaaaaaaaactatcaataaaatattgt<br>acaattttttcccaggagtaacagaaattgggaggaagggttgaggaggaatgaatctctatcatcttgttgtccatgggaatgctgacaggaaaacaaa<br>tcagggaggaatggcctgacaaggagcccctaaacccaaggtgtcccagggttactgtctccctttgcctttccccttcatgagcagatttctctcccac<br>ctt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	126405999	126406297	1001361	0	-	pAlu8-126005510; RIP_Alu_chr8_126_02	NA	NA	SINE	Alu	Y	gttacccaagctggagtgcagtggctattcacaggcactatcatagtgtactgcagccttgaactcccggactcaagtgatcctcctgcctcagcctcct<br>gagtaactgagactataataagcatttaagtaagtagcttcctgtccccatctttaatgaggcataattaatatataattaactatgcatataaagtata<br>taatttgataatgtacacatctgttcaatcattaccacaatcaagagagtgaatatttgttgattgttcacaaagttgccttgtgcccttagtaatccct<br>atcctctgcactttcaggcttctactccccactccaacacaactgatctgttttctgatgccttacatcaatttgcatcata<font color="green"><u>AAGAATTTTATCAAAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGTCTAACATGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGAGCCAGACTCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAATTTTATCAAAATGG</u></font>gaatcacataggatatgctcttttttttttttttttttggtctggcaccttgctgcatgtatcaatagtcctcatttttttt<br>ttttttgctgagtagtattctgtggatatgacatacaatgtctattcatttatcagttacgggatattgggcttgtttccagtttgaactaatagaaata<br>aagctgctatgaacatttgtgtagtagaagtctttctgcgggcacatgcttccaatggtcttgaataaatatctcgaagtgggatgcctaggtcatatat<br>gtttaacttttaaagtggttgtatcagtttacatttccaccagcagtgtgaagagactcagattctgcctagacttgccaacacatggtatgatcagttt<br>	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NSMCE2:NM:173685:5/8	
0	chr9	4336672	4336969	1001362	0	+	pAlu9-4336570; RIP_Alu_chr9_004_01	NA	NA	SINE	Alu	Ya4	tcctttctctcttgatgcagcctagctttcaacagcactttctccctggggatacaatacatacaaagcttcatttgacagtcaaagcagagcgatgact<br>ttggtgttctagccagtgactgccctgccctgaagcattaaaactcattgattaaaaggatgaagagccatatggcatcttgatttaggaagaataaaaa<br>atacattaaataatttctaaagtattatatccattattcataagtgtggccattactttacatccagagccacaaaatgtcaatcaactgatagaaaaag<br>agcagaattgccagtctcagttgcacctttatggccatccttggtcagcttctctagtaggactaacaagcagtggcaacaagattt<font color="green"><u>AATAATGGATGGA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>TAATGGATGGA</u></font>atttcaggcaatagctgtgtcttagtccattttgtattgctataaagaaatatctaaggctaggtaatttataaggaaaagaggtttat<br>ttgactcacggttctgcaggctatacaagaagcctggtgctgtcatctgcttggcttcaggtgagggcctcaggccacttccactcatggcagaaggtaa<br>agagaagcaggcctgtgcagagatcacatgacaagaaagagacagaggaagtgtcagactcttcttaacaaccagctctcatgggaactaatagagcaag<br>aactcactcactacccctcctcggggagggcattaatctactcatgagggatctgccctcatgacctaaacacctctcattaggctccacctccaaca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	10488752	10489050	1001363	0	+	pAlu9-10488651; RIP_Alu_chr9_010_02	NA	NA	SINE	Alu	Ya5	agcaatatgaaacacagtatttttgtttgcataccaaaaaaattaactgttagctttattggcactaataattatcctatcatttgcttcatgtcaattg<br>gttataccacattaaaggaaggcttccttgcacctgggtcaaaacaggtcacatcaaatttctcttttatttcaaatatctcctcaaatctgtaaacaga<br>atgacaaagaaaacttacttttaagatatacgcatttttgtatgaaccaacattttcagtaatttgactataatagatatcttatagcctgagacacaaa<br>aaaaaggtaagaacaattggtgttgtatattataaatagcaattaaggtaaaattttcacaccaataaacttataagaaaaaaagactt<font color="green"><u>AAAACCTTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAACCTTCTTG</u></font>gaatatctattccctcagcaaaagttggggcaactttatatctcagttaatgttacatttgttaccaaagaaaattcaacaagattcaa<br>gtatttaagctgaactgtctgcccagctaccactagatttatccttctgtacacataccaagcttgaggtttttaaaatgagaaggtcctcattgttcaa<br>ctcccacttatgtgtgagaacatgcagtgtttggttttctgttcttgtgttagtttgcccagaacttaatgtataataaaaaagagaaagtccttactaa<br>actcgatagattattattactagggataaacaaagaccatatattcaacctgccaccatcttttttgtatctgcccaaaacatcttaaaatctcttacca<br>	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PTPRD:NM:130392:1/44	
0	chr9	13645423	13645745	1001364	0	+	pAlu9-13645322; RIP_Alu_chr9_013_02	NA	NA	SINE	Alu	Yg6	cagtaagtaaatatctcaactttgctggtaaccagaaaaaaaaagaaaagccactattaatatcacttttgtcttttatattggcaagaatagcaaaggt<br>tacaaaacacaaggaagtgaatactttgcactgttgatttgagtggaaatgtttaaaattttttcaaaagcaatttggcaatattaatacaaaattaaca<br>tgaaagcatcctttggtagcaaaccagagaaataactattcatgaatattttatatctgtatcattatattggtatctctatatctttttccctctctat<br>atgcactacagttttgtgatagtaaaacaatgtagttaattacctcaataagtgaagttatagaagaaattaaggtatacccataatataa<font color="green"><u>AACACTTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACACTTGG</u></font>taattctgggggggacaatttttttaactaagtatgccatagcaagattcccaagacatattgttcag<br>cgaaaataaaaaggtgtaattatttatttacaaattgaaattttaatacaaaaatatctgttcatgtataccaatatatagtaagggaaatagtagtaca<br>cattctgaattcctgacagaagatactataggaagggcagttggaattaaaagtgggagaatgattaaggagatttttctaattttacctcgttgactat<br>gtttggatgttttatcataaaattaaaaatgaattgatgagacttggacttctatccaagacggaatttcagcaaatggagttacattccagcctaaaac<br>aaacaaaaatggaaaaaatatct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	16379408	16379730	1001365	0	+	pAlu9-16379307; RIP_Alu_chr9_016_02	NA	NA	SINE	Alu	Ya5	tgggctcctcacctctctcttgcaagattcctaatttttaggcactcttacttggtttgatatagctaaaactctgatacctttcattgtccttcatgat<br>tttaccaacctccttggttctaacaattggagtttaagagttactatagaaaatgttctgtattttaatgtacaatatgattgctggccatttatataca<br>aggtatagacttcaaaggaacagagtaggagtgatcaaatgactgaattatccaagtatttcttccacaatcccttttttggtgtggggtcattgtcttg<br>gtgcatgtagacatctgcgcgatagagcaaccaggggagccgcaacactcagcccagcctaagcctttgtgtacaggatcaggtcct<font color="green"><u>AAGAGTGACAGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTGACAGCC</u></font>atctccaggtcatattcttccaaggaaaagtcagtggtaccatgaaggggctgggtaagcattt<br>ggaagctcacccagaagagggggcctcattggtccacgcctgtccttctgaaggcccacagttggacctggggccgccccctccgggatggcttcgtgtt<br>aattatgatgcaatcccctggccatgcagcctcagcaacaatttcgggagtcagggtccatgcgcaaggccattaacactaaacatgttttaatccataa<br>ttgtgtgagatttatttaatttaggggctttatttatagttcgattggaattgtaatgtattttcagccctccgcactgtgatctgtcaatttttatggc<br>gtcttttaattgtgttcttccag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	29614707	29615012	1001366	0	-	pAlu9-29614605; RIP_Alu_chr9_029_01	NA	NA	SINE	Alu	Ya5	cccagactaaaagacactgtggttagtgattgcagacaggaaacaatccatcaactgagggagaatgcagcactaaggacactaggcaaggaatatgata<br>caaaagtactttcctactaggataaaataagcaaacataaaattcattctgagcacttccttccttaagcaatattattaagggctgccaaaagcaaagt<br>ctcactactcagaaaattactgagaaaaaatgaggtaaggaaatatgaaagaactgagactaatggataaaagttaaggataatctagaaaaaagtgaaa<br>gccaatcttcatcatatatatacacaatttatgtttatgtatttatagagaactaacaaacttgcactgagcaaccttttttaaa<font color="green"><u>AATCTACCCAGGCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AATCTACCCAGGCTT</u></font>atggattcagccagatcacctcatcaagaactgattcctttctatgattttttttttgccgggaaaaatgtgagttttg<br>ttgtgtatataccattgttactttcaccgtgatatgcaagctttgactatagcatatcgttataccctatgtgtctgaccccaggagacttgggtgggga<br>agaggaagaaatattttaagcttgcagctaagccagaggaaatggatattagatttttcaattttgtgtgtttgagaatagttaataaaactaagaaatt<br>agatcagtctctttgggagcatttttttaaactatgaaatacaaagctatgggtatggataccgaaccaacatttctgaatcccacgaatttccaggttt<br>aaagtt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	41663269	41663573	1001367	0	-	pAlu9-41588821; pAlu9-40699651; pAlu9-40496918; pAlu9-40700328; pAlu9-40497593; RIP_Alu_chr9_041_02	NA	NA	SINE	Alu	Ya5	gggattacaggcgtgagccaccgcgcccggccaaaacacagatcttatagcaacaagaggaaagaactatgggccaaattttcttagctatgcttgaagt<br>aaactttgacaactaatcactctttattttatttaagaattcccaaccaggagtaaaagtccaaacctgacttataaggcatataatttaaaaaataata<br>aagtgaaataacttaatacaaataacaaaatgttgaaggtaggcatgttaaatccacactatcagattgggttttaaagagaaggagaggagacttcaag<br>catttagaaatcaataggaaaaagattgttctatttttataccataatgcaaaggaggcagagtgattttaagaacattgaagttaa<font color="green"><u>AAGCAATTAACTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGCAATTAACTTGG</u></font>ggtaaaataaaatagaggtaggtagataatcagatatatgtaaaaacaaacttcaaaaattattttaacatcataatttt<br>agataaattgaatcagtggcttattcttgaaggtatagtagcaaatgagatgactgttaagtaacaaacaactttttgtttgacatagttgaagttagta<br>ccatctgtgtgcaagagacaccgttcctatcacacagatagcatgggaaatacctgcctgcatgattcaattacctcacaccaggtccctcccacgacac<br>gtagaaattcaagatgagatttgagtgggtgtgagaaatctactcatccatccaaacccaaagaatggacttagaggcatgaagaaaagcgaaagtgaga<br>cttaata	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	78476842	78476843	1001368	0	-	pAlu9-61393723; RIP_Alu_chr9_079_01	NA	NA	SINE	Alu	Ya5	gacagaaaccctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaacccagaatttcatatccagtcaaactaagc<br>ttcataagtgaaggagaaataaaatactttacagacaaccaaatgctgagagattttgtcaccaccaggcctgccttacaagagctcctgaaggaagcac<br>taaacatggaaaggaacaaccagtaccagccgctgcaagatcatgccaaaatgtaaagaccatcgagactaggaagaaactgcatcaagtaacgagcaaa<br>atcaccagctaacatcataatgacaggatcaaattcacacataacaatattaacattaaatgtaaatggactaaatgctccaattaa<font color="green"><u>AAGACACAGACTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGACACAGACTGG</u></font>gcaaattggataaagagtcaagacccatcagtgtactgtattcaggaaacccaactcacatgcagagacacacataggcttaaa<br>atgaaaggatggaggaagatctaccaagccaatggaaaacaaaaaaaggcaggggttgcaatcctagtctctgataaaacagactttaaaccaacaaaga<br>tcaaaagagacaaagaagaccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacc<br>cagattcataaagcaagtcctgagtgacctacaaagagacttagactcccacacattaataattggagactttaacaccccactgtcaacattagacaga<br>tca	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PRUNE2:NM:015225:9/19	
0	chr9	74859351	74859616	1001369	0	+	pAlu9-69239549; RIP_Alu_chr9_072_01	NA	NA	SINE	Alu	Ya5a2	ctgatgtttcaggctgcaagctgtaagagagggaagtgattatcctgtgtacctaatggcagcttcacaatctctgtaaacagaaagatggtagaagact<br>atgcatatgctgtcccactgcaacacttactgtcacagagattgacacttccattctccacacctaggcattttgaaaccactataagaagaaatacagc<br>aagtgtatatttaataacatttattcttacttagtataatcctaagtattctattaataatatcctaagaactggtgattataatgaatattgagtaatg<br>tgcaaacaaactgagttaacatgggtgctcctaaagaaataccatttgtatggaggcacttgtttaagctgaacgagtatgtaactt<font color="green"><u>AAGACTTGATATT<br></u></font><font color="red">GGAGATCGAGACCATGCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTA<br>TTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAG<br>ACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTTGATATT</u></font>atgggaaaattcttcatattt<br>aattaatctaaagcataggtcacaaactcaagcacctattgagcaatgaaaaatacgaaaaataagtgaattgcacttggtgaagcactgtgaggagggg<br>aggtcatctgccgcacctaactcggctcagtaaaccgttggcaagcaggacaatgtcccaatgttgtcagcttttacaattataaaagagaacctggaaa<br>tgcatattttcatgtgaaatctgatttttaaatgttagcaatagtgaattatttttaaaagattatgagagcaaaccaaaatgtattggaggactgtgta<br>cagaactaatcctctaggtctgtggtctctggtacagacagaaaccagtttctccttctagagaga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	96332745	96333054	1001370	0	-	pAlu9-90591952; RIP_Alu_chr9_094_01	NA	NA	SINE	Alu	Yb7	ttaaaattgcaggaagaaatgactaagtattccttcttttcttgaggctttaagtaggaatccatttccttgcattttacagtttgtaaagactgctcga<br>attctttatttcatgcccccacccacctttcattttcttttctttttttattaagtttaagtccgggtacatgtgcaagatgtgcaggtttgttacatag<br>ttgaacgtgtgccatgatggtttgctgcccctatcaacccatcacctaggtattaagcccagcatgcattagctatttttcctaatgctcttcccagacc<br>tactccatcacccaacaggccccagtgtgtgttgttctgctccctgtgtccatgtgttctcattatttagctcccactcataagc<font color="green"><u>AAAAACATGGTGTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAACATGGTGTTTGG</u></font>ggttttccgttcctgcattagtttgttgaggataatggcttccagctccatccatgtccctgcaaaggacatg<br>atctctttcctttttatggctgcatagtattccatggtgtatatgtaccacattttctttatccagtctatcattgaggggcactagagttgataccatg<br>tgtttgcaattgtgagtagcaatagctaatatttttaaataatatataaattattatagtcatactggaaacctgtaaaaatgatcagtgaacttgaaga<br>catagcaatgttgaactaaacaaaacaaatcacagagaaaagtataaaggttaaaaaataaaaagagctctagaatagtttgctgtaatatcaagcagct<br>taatatttagta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	111470034	111470336	1001371	0	-	pAlu9-105887562; RIP_Alu_chr9_109_01	NA	NA	SINE	Alu	Ya5	agagacagacagactctatgtgccccagacaatggattttccttttatgtatcctgcactctgctttgcctttgcccagacacacaatctatacataatt<br>aatctcccaatacatatgattaagcttcagctgtgctctgactaaaagtctgagttatgctttgacaggcttctaacagagagcatgatattttccagtg<br>ggataaaacaagaatgtgttttgttcctttctctttgggatgagctaattgtaagccctcctgctagaaagaaacagcaaattaagttttcctctatatg<br>caaatgacagttttataaacagattagtagtgagtttccatcttttctctctagttgttggcagagggatatgtagctcaattacttt<font color="green"><u>AAAACCAAAGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAATCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAACCAAAGCC</u></font>atcattttcaaaggtattcccaataattccatgcatattacctcatttgtttatattttacaactaacctatcctgagctatagg<br>cttctggttatatttaccttattgttgttgttgctatttgtgtgagacagggtctcactccaatgcccaggctggagtgcagtggcaacatcttggctca<br>ctgcaacctctgcctcccagtgtcaagtgattctctcacctcagcctcctgagtaactgggattacaggtgtgtgccaccatgcccagcttatttttgta<br>ttttttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatacacctgccttgacctcccaaagtgctggga<br>tta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PALM2:NM:001037293:1/7	
0	chr9	41001834	41002140	1001372	0	-	pAlu9-40093744; RIP_Alu_chr9_040_02	NA	NA	SINE	Alu	Y	aagtgtggttaatatatgggtattcgtgcattttatgacattgtgtattaaaagatacatatttacaatactacattatttaactctctaagtagatttc<br>tatgtagtataatactgccattatgttttgtctttgacattgcatattgtcaattttattcagtttatttagtgcatactttatgtaaggtactctcata<br>ttcaaaaattcttctaataaaataaatggacaaatcaagaatgtatcaaagaatatgagttctgtcttgatcattggtatagtttggatatttgtgccct<br>ccaaatctcatgttgaaatgtgatccgcaatgttggaagtggggcctggtgggaggtatttgcatcatagggatgggttcctcat<font color="green"><u>GAAAAGCTTGGTGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGAGGATCGAGACCGTCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAGATACAAAAAAATTAGCCAGGCGCTGTGGCGGGTGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCGCTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>GAATAGCTTGGTGTC</u></font>ctccctgtggtaatgagtgggctctggttgtattagttcacaggaggtctgattggtaaaaagagtctggcacttcgt<br>tccctctctcgccacctgagaggccaactcccccttcaccatctgccatgattgtaagcttcctgaggcctcaccagaagcagatgctgatgccatgctt<br>tttgtacagtctgcagaactgtgagccaaaataaatctcttttccctataaaccactcagccttggccggccgcggtggctcacgcctgtaatcccagca<br>cttcgggaggccaagacgggtggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaaaaa<br>aattagc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	114976919	114977200	1001373	0	+	pAlu9-109390659; RIP_Alu_chr9_113_01	NA	NA	SINE	Alu	Ya5a2	ttcccattacctgctctgcagctgcttggtctgtggacactcgagtctttttcaagagctgtcgaagtttgtccaattcctcctggtatgacttgcgaat<br>ttcatctatctcctcctcggcctgagaacgctcttgagctgacttctttttcctttctgagaggttcttaggaacaagagaaccatcatcagctctagct<br>tgttaacagagaataaagagggatgatggcggtggcagttaattaccttgtggaatccttactccatttctgaaaactccattttttagttgaattttcc<br>cctaaatatttaacattcttggctactgggtgaggaaaatggtgacaggagaaggaaaacaagaagagctgtatctacccctctatt<font color="green"><u>AAGAGCTAGGGAA<br></u></font><font color="red">ATTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAG<br>CCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATC<br>CCGCCACTGCACTCCATCCTGGGCGACAGAGCGAGACTCCGCCTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGCTAGGGAA</u></font>catcc<br>taactttaataaaggtacaggaaatcagacattctcataccctgatagtaagaaaacgaatggatatactctctttggatagtaatcctgtgaaaagcct<br>ttaaaaacatacgtatccagaaattccacaaattgtaattaaggattcaataagtcatagtcataaagagtgtgttacaaggatggtcactgtagtagta<br>tctatagtaatgacaaactgaaaacagccaagaggttagaaggaattggttaaaaataaataaataaaatggaaaaaatcctggaaaaaaatgcaattgc<br>agaccaagatttaccctcttaaaaggcactgggccaaaacagctttacctaatgagatttactgaagcctcaggagcagttt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FKBP15:NM:015258:21/28	
0	chrX	40390129	40390442	1001374	0	-	pAluX-39349696; RIP_Alu_chrX_040_01	NA	NA	SINE	Alu	Yd8	atcagctcttttttggctataggatgccgtaaggatgacagagtaagccaagggaagttagggctaaaatagcaccttaagtgcccagttaaaggcactt<br>tgggtagctgggaatggggtaggcagccggatctgtcttcagatcttggcaatgtcacttactaagtagatcgagtaggaaatttttttgcccagtaagg<br>gacggagagggacagccagaagtggcttcctaacacaaattgactttagcagtcagtctacatgccagtagttatcagcaggcacagggtgggcactgga<br>aaggagcagtgcctgggaagcagatgatctgagtcctggatcagctgccgtggtgtgacactgggccagcttgtgctccccaatctcaaa<font color="green"><u>AATGAAAGGA<br></u></font><font color="red">CGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGT<br>CTCTACTAAAAATACAAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA<br>GGCGGAGCTTGCAGTGAGCGGAGATCGCGCCACTGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AATGAAAGGA</u></font>attggggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggccaaggtgggaggatggcttgagct<br>caggagttcaagaccaccctggataacatggcaaaaccccgtctctacaaaaaaatacaaaaattagctgggtgtggtggtgcatgcctgtagtcccagc<br>tactcaggaggctgaggtgagaggatcactggagcctgggaagtcgaggctgcagtgagccgtgatcacaccactgcattccagcctgggtgacagagca<br>agaccctgtcttaaaaaattgaactgtatcaggggtccccagacttttgggtatcacgagccggtaaacccaccacacctacaccatcttccccattttt<br>ttccactgcagcca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CXorf38:NM:144970:2/7	
0	chrX	47935293	47935582	1001375	0	-	pAluX-46876575; RIP_Alu_chrX_047_01	NA	NA	SINE	Alu	Sc	aggaaggaccatctggtctctgatctgttactggggccacttgcatggcttaggaatcgctttgactgttggcccctccctactgtgagctccttgaggg<br>ccttgtctgcacctggggcatccgggaagtcccagtcccagcccaggggatccctcggaggcccctgaattagtgaccctacaagtgcagattcaactct<br>ggtttagagggtaaagggatctgggagttgggttgccagtgtggagaccgaattcaaagaaggatcatgaaaggtattaattgttattattactacattt<br>aaacagtgtttacaagctcagagaggccttcccttagcctattttacatgtattgttcactatttcataagtgaggaagctgaataaa<font color="green"><u>AAGTAGCCTAAG<br></u></font><font color="red">GACTGGGCGTGGTGGCTCACGACTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCATGAGGTCAAGCGATCGAGATCATCCTGCCCACCATGG<br>TGAAACCTCGTCTCTACTAAAAATACAAAACTTAGCGGGGCGTGGTAGTGCCTGCCTGTAGTCCCAGATACTCTGGAGGCTAAGGAAGGAGAATCGCTTA<br>AACATGGGAGTTGGATGTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGCAAAAGAACGAGACTCCATCCAAAAAAAAAAAA</font><font color="green"><u>AAGTAGCTTA<br>AG</u></font>agtgttggtcagtgatacatcccaatgcaaccagaattgttatgggtaccacctcactgaattccacattcaatgttggtgcctcggtaggctggtat<br>gccagatctggtactgctttctttgctgcctggattaatttcagcaaaccatttctttccctctcccttccctgtatacatctccccacaccatcttgtt<br>cagcagtgttttgtcccctctgtatgtctttacatttactctcccagcagctgtctacgagcttatatgggatcccttgtattttacggaaactcttccc<br>tttgtagaccttgtgaattcttagaatgctatgctccaaatcttctgtataccaaactctcaattacatggagatatttgctgtttgcaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SSX5:NM:021015:6/9	
0	chrX	55696961	55697273	1001376	0	-	pAluX-54285500; RIP_Alu_chrX_055_01	NA	NA	SINE	Alu	Sc	aaagccatattgaatcataaatatgagagcatattcttacttctgattatacccaacaactaacaattttcagattattttctcatttctgcttttaaca<br>aatacataatgcatttctaataccagtttgtgtgaaatatcctgagcaccctaagcagattctagtaccagctctgacattattcgtgagattctggatg<br>aattccataaattctacacccatcttttgctgttattgaaaatagtaaatgcaaatcagatatttaaaatctgtttcaaagttgatttctgtatcctcat<br>gttctgttggatagaatacaaagatatgacttgtttttcataacaatcagtttcactccagttataatatctgagttgaaatttcatggttcct<font color="green"><u>AAGAAA<br></u></font><font color="red">ATGAGTGGGCAGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACTGAGGAGGGCAGATCAGAAGGTCAAGAGATCGAGACCATCCT<br>GGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCGCATGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGG<br>AGTATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAAATCGCACTATTGCACTACAGTCTGGCGACAGAGCAAGACTCTGTCAAAAAAAAAAAA<br>AAAAAAAAAAGGA</font><font color="green"><u>AAGAAA</u></font>gagaaaacgagtgggcaacttgcttgatgaaagtatcttttccacacatttttcaacttggcgactgttaatcagaagagc<br>ttctgaatttataggaagtattccatgtttatggaagaaattacctaaatgattttactctacactgctgaaccattccattagactatttacattgaaa<br>gatagttttcagttatttccaggagcccgttgaacaagcctcaatttcattcttaggaagcttatagtcttaaacgattatcttgttaaaatagttagca<br>aattacatgagaaaggaaaataataaaaaatgaaaataataaagagcaatagaataaatctaagggaaaagaggtacttactaaaagacagctatgaatc<br>attagtaaaagga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	88367388	88367687	1001377	0	-	pAluX-86516355; RIP_Alu_chrX_088_01	NA	NA	SINE	Alu	Ya5	ctctctttaatcctataaaaggcgaggaagctgcagaagaaaaagtttgaagctagcagagtttgattcttgagatttaaggaaagaagccgtctccgta<br>aggcaaaacaggaagggctgatgtgaaagctgcagcatattatccagaggatctagctaaaataattgatgaaggtggtgacactaaacaacagattttc<br>agtacagacaaaatagggttatattgatagaagatgctataaaggactttcatcgctagggaggagaagtcagtgtctggcttcaaatcttcaaaaggca<br>ggctgaatctcttgttatggcctaatgcagctagtgactttaagttgaagctgaatctaatttgccattctggaaatccttgggtcttt<font color="green"><u>AAGAATTATGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGAATTATGC</u></font>taaatctactaagcctgtgctctatacatggaacaatgaagcctgggtgaaagcccacctatttacagaatcgtgtattaaatatttta<br>aacccaattttatgatctatggctcagaaataagatttctttcaaaatattactacttattaactatgcacctggtcacccaagttctatgatggacgtg<br>tccatggagattaatgttgcttttatgcctgcaaacacaacatctattctttagctcatggattaaggagtaatttaagctttcaaatcttattatttaa<br>gagatatattttgtaaggctctagctgccatagatgttgattcctctgatggaccggggcaaagtacattgaaaaccttctgtaaagaattcacccttct<br>	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	90810109	90810407	1001378	0	+	pAluX-88959081; RIP_Alu_chrX_090_01	NA	NA	SINE	Alu	Ya5	gacaagaaaggttatattttgagcctaatattcaaatcagtcactcggcttttcacatatctcttgctaatgacgctgtttattttattagacaaattat<br>ataatgccataaaacaggggaccttctccaggtattttctcctatgggagactagctgataaagtatggtataaccataacattgtggtttcttccaaga<br>taaggatttccacagtgtttttcacataaagagtcctagagctaagtttcacttaataaaataagaggcaacttaaaatgatggttaaaaaaaagatact<br>cattacaacatgatgtagtgatgtagtggtggaaaataaatagaatgcaaagaaatgaaaaatagaaacttatatataagcttctta<font color="green"><u>AAGTGTTGGGACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGGGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGCGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGTGTTGGGACT</u></font>taggcaataccacacttgggctcagatatctgttgattgattaactgggtaatggcgtgttctcctggactttgtaaaaacattgtaa<br>atattgacatatatttgaaaatacattataagctatattaaattttagaatatgtaaggggcagcagtagtatctgaagtcaatatctttcactttttat<br>tttttttttctgaaggttcatcctatagttaatgctttggtaagtaaagaggatagggtactgggtcctgcaacttagctctgagttctcagctaaggta<br>agtagttagtgcttcatgcaaacagtggtatagaataacttcactccagttacttattagggaggatcgtcttaaactctgcctctcaacattataaat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	91616539	91616846	1001379	0	+	pAluX-89765511; RIP_Alu_chrX_091_01	NA	NA	SINE	Alu	Ya4b	ttgttatttgttttctgttcattttgtggccttctcttccttctttccttccttttttcttcttttagttaagatgattttctctggtgatacaatttag<br>ttttttttttaaattttttgtcagtcagttatctgttttttgatttaaggttaccatgaaacttgcaaatactatcttataacccattattttaagctaa<br>taataatttaacactgtataaacaaacaaacataaaaatgtagagaaaactcataaacactctacattttattaccctactttttaatcttttgttgttt<br>ttattgatatattgttatactgtctaggtcttgaaaagttgtagttattattttttattggttcctgttttaatatttctacttatgat<font color="green"><u>AAGAATAGTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAGACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGAATAGTTT</u></font>acacaccaaagttacagtgttataatattctgtattttttgtgtatttactattaccagtcagttttgtacctttgtatga<br>attcttgttgctcattaacattctattctttttaattgaggcactctctttagtatttcctgaaggacaggtctggtgttgttaaaatccttcagctttt<br>gttttttggctgaagtctttatttctccttcatgtttagaggatattttcaccagatatactattatagagtgaaagtattttttctccagcacttcttt<br>aaatatgtcatgccactctctcatgccctgtaaagtttccactgaaatgtgctgccagatgtattggtgctccattgtatgttatttgtttgttttctct<br>tgctgctc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PCDH11X:NM:032969:5/6	
0	chrX	134985664	134985979	1001380	0	+	pAluX-133102677; RIP_Alu_chrX_134_01	NA	NA	SINE	Alu	Ya5	tctttgcctggaaactaagatcagatcctcagtgggctgcgcaggggaagtcattccagagaattttatgttcaatcaacgtgtaacacctaacacgctc<br>ctacttgacacaggcacactctttcctaaatgcattccattccctcaactttccaaagttcccataaggagtcctactatgtgctaggaatccagcacat<br>gcatgataaaactccatcattcttttttcatcattttcaactggctactattaagtgcaccatatgggccctgagaatgaagcattgaaaaaggcaaatt<br>catggagtttacaatctagtggaagacacagataaggaaaacaataaataaacgtgccatttttctgacagcaatgagtgcattc<font color="green"><u>AAGAAAATAAAACAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAT<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAATAAAACAGGG</u></font>ggtaataggataagtagtgatagggcaggggagtgacagagtgtgagaagggctcctttaaccagga<br>tggcagagaagacctctctgtagggaagacgtttgcattcttttttcttttttttttttgagatggagtttcactcttgttgcccaggctggagtgcagt<br>gccgtgatctccgctcactacaatctttgtctcctgggttcaagcaattctcctgcctcccaaatagctgggattacaggcacccaccaccatgtctggc<br>taatttttgtatttttagtagagatggggtttcactatgttggccaggctggtcttgaactcctgacctcgtgttccctctcctcagcctcgcaaagtgc<br>tgagactacaggtgtgag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	138212577	138212886	1001381	0	+	pAluX-136329590; RIP_Alu_chrX_138_02	NA	NA	SINE	Alu	Ye5	aatggaagcagaggtttgagtgatgcaacaagaaatgtgggaggcctctagaagccagaataaccaaggaatggattctaccctagagcctccagaagga<br>acacagccctgtgaacaccttgattttagcccagtaagacccaatttggatgtctgacattcataattataacataataaatttctgttgttttaaacca<br>caaagattgtggttatttgttacagcaaaaataggaattcagtaatatatatacaacacatatgatatttaaaggtctttctaatcaaaaccaggcctcc<br>tttaacctacaggtagagagttttcccagagcagtgcctctccataactcttcctagggcccgtctaatcctgacactgcaggt<font color="green"><u>AGAATTCTAGGTGCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AGAATTCTAGGTGCAAG</u></font>gctacccaaaggctgccattttgagatgattctgcccccaccagtttctccaggccagaagctgattgtctgt<br>tgttttaggtgcagctcaaaacctccagttttgccttctgtaagagcactgacccaactctgcaaaccattgctagttagtaacaatcagaaaaggatat<br>gtgaatgcttattcttctccatgctattttctaacctggctgtattaacagctaatcagaaattaacgctatgagtaggcactcttctgacttaagaggg<br>agcaagtcagcgaaatatttaagtgaccatttcattgcccgcctccattccaacagggttaatgatcatgaggcctggaacttagtcgtcatcatttccc<br>attgggatttt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	144243695	144244005	1001382	0	+	pAluX-142293100; RIP_Alu_chrX_144_01	NA	NA	SINE	Alu	Sq	gcttgcagtgagccgagattgcgccactgcagtccgcagtccggcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaattcaagaa<br>acaacataagctggtgaacttgcagagaaaaaagaatatgcttttacattgttggtgggagtgtaaattagttcaaccatgtggaagacattgtggtgat<br>tcctcaaagacttagaggcagaaatatcatttgacccagcaatcccattactggatacatccccaaaagaatataaatcatcccattataaaaatacatg<br>cacgtgtatgttcattgcagcactattcacaatagaaaagacatagaatcaacccaaatgcccatcagtgatagactggata<font color="green"><u>AAGAAAATATGGTACATA<br></u></font><font color="red">GGTCCGGGCACGGTGGCTCATGCCCGTAATCCCAGCAATTTGGTAGGCCGAGGCAGGTGGATCACCTGAGGTCAGGAGCTCAAGACCAGCCTGGCCAACA<br>TGCCAAAATTCTGTCTTTACTAAAAATACAAAAAATTAGCGGGGCATGGTGGGGGATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGGGAATCA<br>CTTGAACCCGGGAGGTGGAGGTTGCAGTAAGCCGAGATTGTGCCACTGCACTCCAGCCTTGGCAACAAGAGCGAAACTCTGCCTCAAAAAAAAAAAAAAA<br>AGAAAGAAAGA</font><font color="green"><u>AAGAAAATGTGGTACATA</u></font>tactccatggaatactgtgcagccataaaagggaatgagataatgacctttgcagggacatggatggagct<br>ggaagccattatcctcagcaaactaaggcaggaacagaaaaccaaacactgcactttgtcacttataagtgggacctgaatgacaagaacacatggacac<br>atggggaggaacaacacacattggggcctgtcagaatgggttgagggagggaaagcaccaggaataatagctaatgaatgtgggcttagtttctgggtga<br>tgggttgatctgtgaagcaaaccaccatggcacacctttacgtatgtaacaaacctgcacatcctgcacatgtaccccagaactaaaaataaaagttgaa<br>gaaaaataaaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	149301807	149302130	1001383	0	-	pAluX-147322023; RIP_Alu_chrX_149_01	NA	NA	SINE	Alu	Y	aaaactgtgttaagagaacacataccatttacaactgctgcatagaaaatgcaatacttagatatttaatataatataatgtgtataggatctgcatcca<br>gaaagttacaaaatgcttttgtaagaaataaagactcctgtgcatgtatcctggaacttaaaataaaataaaatataaaaaatcaaagaggagcacaatg<br>agatttcctgtgacctattaaaatccataaaatttatcaaagaaatttacatacgaagtaaatcttgatagtagttccaatcacaataaattatacttgc<br>aactgacatttataagcaatttcttttctctctttaaaaaaactctatattttctttatgaaaatagtgattttttaaaactctactc<font color="green"><u>TAAAATGGGACA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAGAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TAAAATGGGACA</u></font>aaatatttgtaatctgaagtgtttcaaattttgtactctattgctgcagtcttatactacatca<br>acaagtatgaatacatttataagaatatatttaaaatattttcacttattgtatttcccttgaaaatattgacatttttgaattttaataaaaagaattc<br>agaaaaaaagagttgaacatcaaatagaaataataataaacaccttttttgtgctcataaaagaataaagacctaaataaaagaggagacatactatgtt<br>tactgcctagaagactcaacatagtaaagatgtcaattcttgaattgacctgtaggtttaatgcagttctcatcaaaatctcagcaaagttttttgtaga<br>cgtagacaaggttattctaaaata	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	78958873	78959166	1001384	0	-	pAluX-77113362; RIP_Alu_chrX_078_01	NA	NA	SINE	Alu	Ya5	gcactaaatatggaaaggaaggaccactaccagataatacaaaaatacactgcaacccacagatcagttttactatagagcaaccacacaagcaagccaa<br>cgtaataacctgctaaaagcacaatgaaaggatcaaatccacacatatcaatactaacattgaatgtaaatgggctaaacaccccaattaaaagacacag<br>atagacaaactggatttaaaaagtaagacccaatggtatgctgtcttcaagagacccatctcacaaataatgacacccacaggctcaaaataaagggatg<br>caggaaaatctactaagcaaatagaaaacagaaaataaggagggttgcagtcccaaattcagacaaaaccgacttcaaaccaacaaagataaaaaaaaa<font color="green"><u>A<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>A</u></font>aaaac<br>gaaagaagggtgttacataatggtaaaggtctcaattcaacaagacttaactattctaaatatgtatgcacccaacacaagagcaccaagatttataaac<br>caagtttttagatctctacaaagagacatagactccccaataatagtgggagatttcaacactccactgacagtattagacagatcatcaaggcagaaaa<br>ttaacaaagatattcaggacctaaactcaacattgaaccaaatggatctgatagatctttacagaactctctacccaaaaaacaacagaatatacattct<br>tctcattgctccatgacacatactcaaaaattgaccacataattgaacataaaacaatctaaaagaacacaaatcataccaaacacactctcag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	92027262	92027557	1001385	0	+	pAluX-90176234; RIP_Alu_chrX_091_02	NA	NA	SINE	Alu	Yg6	tcggcctcccaaagtgctgggattataggcatgagccaccgcgcttggccataattgagaagtttgaaccagaaaaataaaatgatcagacttgtattag<br>gttggtcaccattacttttaatggcaaaaaccgcgatcacttttacaccaacctagtattttatgaagctcactctgtttgcagtgtggaaagttgattt<br>gcagtggacaaaaagcagatatagtaaaactaatgagaaaattacaacagtagttcaggtaggagatgatagggaatttgtcttagatgttattaattga<br>aatgatacaaagtgggccaaatcgtagtttctttaaatccagggagttagtaatggaatataggagaaatacaaagagatacat<font color="green"><u>GAAATATCAATGTTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGATATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCTCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCTGGGAGGCGGAGCTTGCAGTGAGTCGAGATCACACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAA<br>TATCAATGTTCT</u></font>tggattagggaggtagctgatttatgtgtattattttataaattaaaatagaacaatacatagaacaatggtgacaagttttcatgaa<br>gcaaagattgtgactaatcttacactaagcaactgacacccataagaaataagaaaggaaacacaaaaaactttactaaatagaaaatgtgaatttaatt<br>gacaaacatgtcctaatgtaacagtagtttcaatgcatgtaaatggattatagtgattaatgaagcaaagcaaatatacagttttgaaaaaaagagaaag<br>aataaccagatgttcttttaaaggacacagaataatcagaaatagaggagaagaaaaagaaatactaagcagtatgaatcaaagaaagctaggagt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	119918306	119918603	1001386	0	-	pAluX-117985277; RIP_Alu_chrX_119_02	NA	NA	SINE	Alu	Sg	tttgaagtgaatttggcaggattcattaaacaccttccagtgtctgtcatttaccacctcaacactcagtgatgactgcatccatttcaactctgcacat<br>tcttttctaagtagctttaactacgttaactcagtgaaattcttatgtctcttgggaggttttcactactgcttagctatgaactatataacatttttat<br>gacactatctctactggcatgagccattactaggtggaaataagtgaactctgtgaccgccttgcagttcccatgctccagggtgcctccacatgggact<br>actatagtgttgctaataatcataaaattaaaagggcaggacttgtgtggacctaaagggtagccctggacactaaggcctc<font color="green"><u>AAAGAAAAGGTGGAGCTC<br></u></font><font color="red">GGCCGGGCACACTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTAGGTGGATCACAAGATCAGGAGATCGAGACCATCCTGGCCAACATGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAACTAGCCGGGCGTGGTGGCATGCACCTATAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTGG<br>AACCCAGGAGGCGGGGATTGCAGTCAGCTGAGATCATGCCACTGTACTCCAGCCTGGGCAATAGAGCAAGGCTCCGTCTGAAAAAATAAAAATAAAAA</font><font color="green"><u>AA<br>AGAAAAGGAAAAGCTCTGGATTC</u></font>tggattctggattctgagttgtcctagagcttaagggccttgatcattcattggacaaagagcatgtcaatctgaag<br>ttttcagcaaatgagcttagggctcactgagagcccctcgttgacccttccggtcccgccccctgtctcctgccaaccagaatctttcccgccttatcta<br>agtcctctcaggccagacttggtgggaggttcctaggattcgctccctgcccttcccaccttagggtgtcctctgagacagactcttatttcctcaataa<br>agagaaagactcttattccctcagcggccagctcctcgcctcccctcggccgtagccacctcagtggtcaccgtcttcaccgtggtcgcctcagcccgct<br>cgcca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	promoter:CT47A7:NM:001080140	
0	chrY	9072975	9073273	1001387	0	+	pAluY-8978451; RIP_Alu_chrY_009_01	NA	NA	SINE	Alu	Y	caagagacatgccccagattaatactttgtatccctcaatccagtgaaattgacacacagtatgtcatatgttcaccccttttcaacttgaatctatcca<br>catctcctgagataatacgtactcttaaaataaagacaaaaatgaggttatagttacacctaacataatacaaaaatgaggtcatatttacacgtaacat<br>aatagaactatccttcatacaatcaggaacacaccaatccccaacccgaacactattacgtaaagttacgtatactcaaatgatgatatgaagtcaatat<br>atcttatgtcacataataaaaggaaagaaaaaatgaagatattttcttactacatgtgtatatatgcacaaacttttttagcaa<font color="green"><u>AAGAAGGAGGAAATAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGAAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAGTGGC<br>GTGAACCAGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAAGGAGGAAATAC</u></font>ttaagacaattaaagtcgtcatttctgcagctggtcacgtgttttcaggcggtattgatgactggcttctactccccattgtgtg<br>ttttctttgccttcagtaaggtattcagcaggtcattttttttttcctggtttgtgacccaaaccttaattcctgaaggatctgaaccatttggagtcct<br>gccaggattgggctcttgtagtttcctattgaccttaatcgcaggtcatagtaatactaagacacatcctaatgtaccttctctattccattcatactct<br>tccttacctaaattgtggagcagtagactgatttcctccttgatagtttgggtcaatcacctcagtcaatactgtgccttccttcttagactgttgact	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	48039958	48039959	1001388	0	-	pAlu10-48355753;1104685007159; RIP_Alu_chr10_048_01	NA;NA	NA;NA	SINE	Alu	Ya5	gggatgcgggccggctgcagtgagcggccaccttgccaagacacagagagatggagcgtgaagccaacacagtgtaaggcaggactgagagaggagaaag<br>catggctagaactttgcctgtactgtagctcaagccacgctaaagccaaaccgttgccaaccaagaaggtttcattagtcaggtgcaatccactttgctt<br>aggcctgtttggattctgcttttctgcaacctgtgacaaaaggaatccaaatgacaacattttaaaaattttaattaaaaaatttttgtcaaagagaagc<br>aagcctgtatatatcaaaccatgtatacctcaagtggcttcgaaagtaaacctaaggcagagactgaagacactttggtgtagattttctta<font color="green"><u>AATTTTAT<br></u></font><font color="red">CACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTAC<br>TAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAG<br>CTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AATTTTAT</u></font>gccagtctttgctttatttaggtatagacacataagactaccataattcagatcgttagtctttgaataatcatgtggactgacttcc<br>ctgggaagtcggtgaagaattagaaagtacacaatttggaggaagaggggggaaaggagagataaataagaccttctgtggttcaagtgaggcagctcct<br>tcctgaggccccaacaatgcaaagctggtgatagcagagggaggggtccttctgcaggagggaacatccagggtctgtttcctcctgggaaaatcagagc<br>aagtttgagacttgttccctaagacccagagttagggggattttctcagatggaccagggtccatttgtatgaaaaggtaaccaggtccctgaaatcacc<br>acct	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr10	132035578	132035579	1001389	0	-	pAlu10-132075177;1104685055881; RIP_Alu_chr10_132_02	NA;NA	NA;NA	SINE	Alu	Yb7	agataataaaagaataatataatacactttgtgttcaaactgtcaaaaatgtagacagaatagaaaaagttattaaaagacacaaattaccaaactgact<br>tgagaagaaatggaaaatctgcatagtcccattcttatatttgttaaagaaattcaacttataatgagaattaccccattaaaaaaaacctcagtacgag<br>atgccttcattgatgaattctatcacttaaaggcaaataagacaaatattgccaaaaatatttgagaaaaaagaatatcatttatcaaaccattttgtga<br>agctagcggaactctgatatcaaaaccaaagatattagaagaaagacaaaatattcagataactatcacctgtgatacatgatgc<font color="green"><u>AAAATTCTTTAACAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAATTCTTTAACAG</u></font>aagattctacttctactcaaaatgaataaaagggtctagctttactcacctgcttgaatcaactaaaaaaaaaaaaaaa<br>acagacaaaacgtatgaaacaatggtatacaagacattgggtatcagacaacaaaaaacaataacccacagacaataagaaaatgaaacaagccctatga<br>ttgtcccgcttactgcttggagaaagttttcaggtctcagggaaaggtggttttcctgaattgaggagatgtagctgagagcctggggaaaccaaggcag<br>ctagaattcacagggcagagtatcatagaggaaagagcttcacaaagagagaactcaggagatcagcagagtctccctcaagtattcagttgaacactga<br>ccagtg	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr10	116996333	116996334	1001390	0	-	pAlu10-117137554; RIP_Alu_chr10_116_01	NA	NA	SINE	Alu	Yb7	gatgaatagtttgcaaatattttctccccttctggaggttgtcttttcattctgttgattgtccttttctttgcaaaagctttttattttatatgatccc<br>atttgtttacttttgcttttgttgcctgtgctgttgcggccttttgcagaaagtcttctccagacccatgtcttgaaggattattcctgttttctgttgt<br>tttattgttttgatccatttttagtttagaggggagggtctagtttcatactgctgcaaatgaatgtcaacttttcccagaactatttattaaagaggct<br>gctttttcagagcatttttttcattaatctttattcagtaatttttgtattcaatacagtctctcaaaatggatacagacttgtt<font color="green"><u>AAGAATGAGAGAGAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCTACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAATGAGAGAGAT</u></font>tcattatccattatccttttctttctcctggattttctatcttgaggtcactattttccaatcaacttattcgggaggggg<br>acaggtagagtgaaattcaaatacctctcagaaatatgattaaatctattgataaaaactatttttgaatgtctcactacactaacaagttctttccaac<br>taaaattccttttttttcctgttaaaccaggaaaaataaatatcacggtgtatagtgttaatatcaaaaggactctgaatgtagacttaactttaaattc<br>tgaatacaacatcttatagcctgtgtgagtttgggtttaaccatggtaaatcacagtgtcttcttctataaattaaatatactaatgtacactacacaga<br>tgta	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ATRNL1:NM:207303:10/29	
0	chr10	96753975	96753976	1001391	0	-	pAlu10-96895199; RIP_Alu_chr10_096_01	NA	NA	SINE	Alu	Yc1	tcaatgaatggataaagaaactctggtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgatggaatact<br>actcagccataaaaaggagtgaattaacagcatttgcagcaacctgatgagattggagactattattctaagtgaagtagctcaggaatggaaaaccaaa<br>cttcttatgttctcactgatatgtgggacctaagctgtgaggatgcaaaggcataagaatgatgaaatggactgtggggacttgggagaaagagtgggaa<br>gggggtgagggataaaagattacaaatatggtgcagtgtatattgctcaggtgatggatgcaccaaaatctcacaaatcaccactaaa<font color="green"><u>GAACTTATTCAT<br></u></font><font color="red">CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCC<br>GTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGG<br>AGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GA<br>CCTTATTCAT</u></font>gtaaccaaataccacttgtaccccaataactgatggaaaaaaataaaaataaagataatttgacatcttccattctaatttggatgccct<br>ttatatctttctcttgtctgattgctctagctatgacctacagtactatcttgaataacaatgatgacagtgggcatctttattgtgttccagatcttag<br>agaaaaggctttcagtttttccccattcaatatgatactagttgtgtgtctgttgtatatggattttatgttaaaatatgtgccttctatccccagtttt<br>ttgagggtttttttcatggagggatgttaaattgtatcaaatgctttttcagcatcaattgaaatgattatattgtttttaatgcttcattctgtgaa	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	89804958	89804959	1001392	0	+	pAlu10-89946192; RIP_Alu_chr10_089_01	NA	NA	SINE	Alu	Ya5	agctctgggtgaaatggaaaaaagttacctaatgtcattaagcctcagtttctcatctgtaaaatggggaaataatagacaataataaaaaaaaaaaggg<br>cctattgcataggcttgtgtgtagacgggatgaaggaatgcataccaaacatgtagctcagatcctggctcacagtaagaagtcgggaaatgtaagctac<br>ggctctattccttgttgtgtgctaggcacttttgtgtatgagatacaatttcatttcccctgcatccaatagagtgggttatatgatccccattttatag<br>atgaggagattgaagcatggggaggttaagcaaatttgttcaaggtccacagccatagatgatctggtataagttattccattt<font color="green"><u>AGAATGACTTGATACT<br></u></font><font color="red">AGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AGAATGACCTGATACT</u></font>tttagaatctttaggaaagttcctgtaggcccataggaaaaggagtttatagttacacctagttcatgactatattaattt<br>atgtcagaagggaattagaatcatcatcaaaagttagagttggaagtaactttattgagtatttggaaaaatgaattgcaacctcatgtctcctgatgtg<br>tagtttaaaacataacaaagcaacaacaaacaacaacaacaacaacaatccaacatactaccaaatttatgccaaaatcccaaatggaaaacaggtaatg<br>tggttctatgctggctggaggacaggcaggacagtttgagccctttcccccacctgttctaaaagggtgtcacaaagccccaaggcacactttaaaaatc<br>aca	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	122130594	122130595	1001393	0	-	pAlu10-122271816;1104685660173; RIP_Alu_chr10_122_01	NA;NA	NA;NA	SINE	Alu	Ya8	tttgacttacacaagaaaaatgtatttcaaatgccagtgaacaaaaaaaatacatctatgtatgtcacctttgagttcatttgtcaagaggagaaaaggg<br>gaaaaatgatgtgtcatattactgaaaagtatgttgactgaattccatttttcataaatcagatattttatattaaaaaggagactgctttgaggagaaa<br>atatgagtttattatccagataatttaaattgaattaatagtatttgaaatatttaaattattagatccaatctgaggtagaatgatttgaattagttat<br>acaacatggtgcatcgtctttttagtatttttgtcactttctgttctagaattgttcttactctcagcaagaccaattgctgctat<font color="green"><u>AAAATTTTGATGTT<br></u></font><font color="red">CGGTGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAACAAA<br>AAAAAAAAAACAAAAAAAAAAAAAACCAAAACCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTTTGATGTT</u></font>ttccgaactatctatccaaaaagatctagattgct<br>tttcccccacgtaaagcaagaaactaattttgctgactggaaactagaaattgccctgtaacgaattgcaactcgttagttgcaaatgggctttttcggt<br>ggcatagactcaacttcccaacttctgggcttgtttcagagccatttggccagaaagctagcaaggcaagccctcttcaccccacattcacccaggagca<br>ggatctcagcttcgtgtctggatagcttttgttgacttctccagacctgccttttcccttccaccactgtaagctgcatcagctggacgtccacttggtt<br>ccacctcaagaggcactgccaggaagcagagaaagggaggaaagtgaagct	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr10	67754672	67754673	1001394	0	-	pAlu10-67977053; RIP_Alu_chr10_067_01	NA	NA	SINE	Alu	Ya5	acccagcacatttttaatgtttctttttctttcaccctttaatgtacagaaaacagtcaatactaaacaaaaaccgataagcatgtagctgagggactac<br>agtcattactgattatcgttaagtgtatttgcactcctgcctttcgtgtgcctattcttattttaatgtttgcttttggtcccaaaagactcatggggat<br>ttctgtggtgatttctaaaattcttcctctgtgtagctccctcctctctgggacagtgcctcacaaatccagctatcccactcttgcaaatctgacctct<br>ctccacagctgaggaagactgccaggctctgtttgggtttacttctctgtgatttggtccagaaaatatctccaatgttttgttgt<font color="green"><u>AAAATTATGATGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAATTATGATGTC</u></font>tcagaagttgtaaaattatgacagggtatcttcatttggctgtgcttggttctaccttagttccttttgaatc<br>tccatatccagtttaagcatgatgataaactaattaaagcaaactgaaggccaaccggcatgcatcgggttaaatgatggcttctcagagcatcttgtca<br>tcatgaaactgaagagttccctgatcccccatgcaggacatggaacaggtttgtggctcacttgttcagttgccatcactgctcaaaccccttgcaggaa<br>ggggagcatgcagatgggcaggtgcagaggctggggccagtgctttgggctctggccctgtggtagtgtctaggggtgggtgcctgcaaccccagtgtta<br>caatgctgtctta	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CTNNA3:NM:001127384:12/18	
0	chr10	68006773	68006774	1001395	0	-	pAlu10-68229160;1104685136577; RIP_Alu_chr10_068_01	NA;NA	NA;NA	SINE	Alu	Yb7	tgcaaagaatttatgactaagttcccaaaagtaattgcaacaaaaacaaaaattgacaagaaggacctaattaacttaaagagcttttgcacaataaaag<br>aaactatcaatagaataaacagacaaccttccgaatgggagaaaatattagcaaactgtgcatctgacaaaggcctattatccagaatctgtaaggaact<br>taaatcagtaagcaaaaatatattaattgcatttaaaagtgggcaaaggacaagaagagacacttctcaaaaaaagacatacatgtggccaacaaatacg<br>tgaaaaaatgttcattatgactaatcactagagaaattaaatttcaaactatgagatactatctcacatcagtcagaatagctattattaaa<font color="green"><u>AAGTTAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTTTCAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTTAAG</u></font>aaacaacagatgctgtttaagctgcagagaaaagggaacgcttatacactgctggtaggaatataagtta<br>gttcagccactgtggaaagcagtgtggagatttctcaaagaacttgaaacagaactatcatttggcccaacaattccactattgggtatacacccaaagg<br>aaaataaatcattctaccaaaaagatgcatgcactcatatgttcatcacaatgctattcacaatagcaaagacatggcatcaaccaagatgcccattgac<br>agtggaccagataaagaaattgtggtacatatagaccacggaatactgcacagccataaaaaagaatgaaatcatgttctttgcagcaacatgaaatgta<br>gctggaggtcattatcctaagc	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:CTNNA3:NM:001127384:10/18	
0	chr10	72275427	72275428	1001396	0	-	pAlu10-72497815;1104685138101; RIP_Alu_chr10_072_01	NA;NA	NA;NA	SINE	Alu	Yg6	cttcttggttgtcaggttttgcaatgtttactgcgccataaatggctaagaagctatttgcagggtaaagagataaaaatggaatctggcttctaaattg<br>actttccttgaacaagagaagaaaagcagaaaaaacacattaaagagcccttttaaacaggtgttatcagggaagcaaagtggtggggaaatttcaagca<br>aatgagaaacagctaatgattatcttcaatgttactgttttcttatcccaaggaagttaactcccataccctactaagagtggggaaaaggtgcagggga<br>gtgttatagaacatccagcaccaaatccactacttgtgtttaggtactaacaacactcaccaagcacagactgcagaggaaaataactcataa<font color="green"><u>GAAGGTA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAG</font><font color="green"><u>GAAGGTA</u></font>acacacaaccaggtttctaggcgggaaaaaggtgggtgggcaggagaggggcttaatcctaagcaaaggtggaagattcag<br>aagcagatcactgagactgctcatcttctgcaccctgagaagtggcctcttcttccccatgttgatctggcactgagtcacttctaggaagctcaaagta<br>tacgatcccctgataccagttcaactccaagaggagagagatcctgtactacttgtgcagatatccccacagcctgatggcagtgcctggcacatagcaa<br>gcactcaaatggtcaccatgtaagtgctgttccaatttcacctaatctttactgaaaaggatagcacaaaatgaaagcaataaattcctgctctgggaac<br>tccaggtgacat	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:SGPL1:NM:003901:3/15	
0	chr10	72863554	72863555	1001397	0	-	pAlu10-73085955;1104685145945; RIP_Alu_chr10_072_02	NA;NA	NA;NA	SINE	Alu	Ya1	tggatatctgggaggaatgccttccaggcagagggagcggcctgtgcaaaggccctgaggcaagagcatgcctagtgcgcttgaggagcatgaggaggcc<br>agcgtggctggaaggggtgcacagcgggaagagttgcaggagatgagggcagagagatctcagggtccatcatggacactttgtaggccactgattgtga<br>ggaaacacgtgatatgaataaccagttttcaagaagcaccctggctgctgtgatgaggacacactgtagggggcatgggtgggagtggctagactggtgt<br>ccaggctcctgcagggatgcaggcagggatgatgagctccaggcaggggagcggtgtgggatctggcagattctgggcatgttt<font color="green"><u>CAAAGTAGAGCTGAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATGCAAAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAACAA<br>AAAACAAAAAA</font><font color="green"><u>CAAAGTAGAGCTGAGAGG</u></font>gggtttcctgctggtggggatctggctgtgcaagaatgaattgagcccaagcacctgggaggatggcattg<br>ccattagctaggacaggagaggctgcaggtggagctggctgagggacaagatcggaagttcatttgagacatggcgagtctggcatggctgttgacaacc<br>aagtagcaacagtgggtcagcagctggacatgctcagccaaggtccaggatgggctggaagcagaagtgtgggagccaccagcagggaggtggtgcttac<br>cgccaccagaggggcaagatcagcagggctcccaaacccctgagctgaggcaactggacagagaatcagtccgtctttgaaaattgtccaaagagcctga<br>aaatgcatatacc	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:CDH23:NM:022124:1/68	
0	chr10	29145305	29145306	1001398	0	+	pAlu10-29255537;1104685338171; RIP_Alu_chr10_029_02	NA;NA	NA;NA	SINE	Alu	Yc1	gcggggcccgccaagcccacgctcacccggaactccagctggctcgcaagcgcggcgcgcagccccggttcctgctcgcgcctctccctccacacctccc<br>ttgcaagctgagggagccggctctggccttggccagcccagaaaggggctcccatagtgcagcgctgggctgaagggctcctcaagtgccaccaaagtgg<br>gagcccaggcagaggaggcgccgagagctgtgaggactgccagcacgctgtcacctcgcaaaagtaaggaagatcgattatttttcacccattagctggg<br>caattcaaaaaaattctgttgcattccattttgggggagtatgcattggtaatagccttttgaagattgatttggcagtgtttattaa<font color="green"><u>AAGTAAAAATAC<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGTAAAAATAC</u></font>ctattttctttgcatcatcacttctgtatttctgtccaagagaattctttgcacatgtacaaagttatacaggttgaaagaggca<br>tgggtaaagattttcaatgcagcattgttcataattgcaaaaaattttcaatttaaatgtccatcattatggaaacaaattgtgatatttccaatactac<br>atagcattatgcagcagtaagagagaataaggtaagtggctgggcacggtggctcacgcctgtaatcccagcactttgggaggccgaagtgggcagatta<br>cttgaggtcaagagtttgagaacagcctggtcaacatggtgaaaccccatctctacaaaaacacaaaaaattagctggacatggtggtgtgtgcctgtaa<br>tcc	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr10	3559026	3559027	1001399	0	+	pAlu10-3669258;1104685348900; RIP_Alu_chr10_003_01	NA;NA	NA;NA	SINE	Alu	Yg6	ctgacatgaggcccttgggtctctgtgcctcagtgtcctcgagttccagttgagatgggtgcccatggctatggattgttgatatccttctggctctgaa<br>atttggatagtttcttctccaaagaactaagtgttactggaggctcttgaaagaaatctgcagcggcctgggatgttacacatccagccccagattaccc<br>caaggatgggcttgaacctcaccccatatccagcgtgaaatgacctgcaggcgtgtctcggggtctggatatcaaggcatccagtgactatggagcagga<br>acgaggccttcaagtcctgatggcgaatggccacttctgcacatcccctaaaaaccttatcttctaaagaccttcaacacattaaa<font color="green"><u>AATTCTGTGAACTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGATGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCATGGTGGCGCACGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AATTCTGTGAACTT</u></font>tactatttctaaaaatatcctaccagctccaccactaaatataacgtctcttccaacgatgagtcaaatgcattttgcatcaatg<br>gctctgcatacttgagaaacggagttgtttgtggtgaagatatttttccatggtgctgctccaacagaggtcatttctaagaaatttctaatttccctgg<br>agaaaaatgaatgcttcaaagtcaaagaagaaggattttttactccagagcaacttctaaatctttttcaaaactggctttttgcttttgagatcaaact<br>ttgctctgtccagtttcaaatatcttcctttttttctgtctctactccagcttttttaactgatgcaaactttgagtatcagggtaaaccactaacctca<br>t	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr11	105549792	105549793	1001400	0	+	pAlu11-106078653;1104685398698; RIP_Alu_chr11_105_02	NA;NA	NA;NA	SINE	Alu	Ya5	aaagaatgcaaacatttgtgtctcacctatgtgttatctggaagctccctaccagctctgagttttcctgcctttgctgtaagttgtccctccttcccag<br>acggaaccaatgtacttcttatgtatatggattgatatctcatgtctccctaaaatgtgcaaaaccaagctgtgccttcaccaccttggacacattgtca<br>ggacctcctgaggctatctcacgggcacatcctcaaccttggcaaaataaactttctaaattaactgagacctgtctcaaactttctaggttcagaggag<br>catgaggcagggaatccatacacttgtctcccatcccattcctctgtatgcagatgtttgaaatgcttcttccccaacgccata<font color="green"><u>AAGAAATAGCACTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAAATAGCACGTGA</u></font>acataaatttaatttcctcagcaaggccatttttatactttctgcagaaacggcacactcgtcagcagttttgccacaagagtac<br>actgaacaaaggagacagggtgatttataacctcacgtgtccaccctactgctgtgtccggtttccactggctggaacgggacctcacattctgtatttg<br>tcctgattggctagcaacttagaacgttttaaaagaggcaaaggcagaggagaactaaggaaggaggaagtaacttgtggaatgctgagaaaggtaaaaa<br>cgccttcaaataaggaagaggaacaggctatgacctaatgcctgcttggaccagtataggcatgccagggcaaatgtttaggctaaattgtgggagcta	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr11	121782860	121782861	1001401	0	+	pAlu11-122311562; RIP_Alu_chr11_121_01	NA	NA	SINE	Alu	Yd3a1	tcgtcatttctctcaccttcaatcaagcaggaaaatttgccctacactgtctattcttcttctctttccattcaaatctcctagtctgggatgacataat<br>gcctggtatttaggtgcatgctacagcctccgggctgtttttcctgtttccaacctttccctagattgatcctgcacgtatatgccacctttatcttctt<br>aaaatactgtttttttcctcaatatgcttccaaaacggaagaaaggaaacataagaaataagagaatatgttcatgactgagggacaggcaaatattttt<br>agacaaaagccaaaaagaaaaaaatgataaataaattgacctatattaaaatcaagaacttctgtccctcaaaagaagcattaa<font color="green"><u>AAGAATGAAGGGCCGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATAAAAAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGAAAGGCTGAGGCAGGAGAATGGCGTGAACCC<br>GGGAGGCGGAGCTTGCAGTGAGCCGAGACTTGCGCCACTGTACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGA<br>AGGGCCGGG</u></font>gccgggcgcggtcgctcacacctgtaatcctagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcaagaccatcctggc<br>taacacggtgaaaccccgtctctactaaaaatacaaaaaattaactgggcgtggtggcgggtgcctgtggtcccagctactcgggaggctgaggcaggag<br>aatggcatgaacccgggaggcggagcttgcagtgagccgagatcgagccactgtactccagcctgggcgacagagcgagactccatctcaaaaaaaaaaa<br>aaaaaaaaaagaatgaagggccgggtgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcaagcagatcacaaggtcgggag	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	38757652	38757653	1001402	0	+	pAlu11-38840229; RIP_Alu_chr11_038_01	NA	NA	SINE	Alu	Ya5	ggttttgaataagatattccttgcctgtttaactttgtccaatgcaatttttcttcgaaacgcttacaagtgaatagagcacttatacacacaggatccg<br>aatggttattatttggcatggagataatagagaaaatgattcttcagaaagaaaaatgaagcatatgcaaaaataaatcagtgatgtaagtaataagtgg<br>ccatgagagaaagaggaagaggaagagtcgttggtcttcattactggcagtttccaaatattgactgcagaccctcaggagagcttcctgcaatataaat<br>ctataagatatccctgtattcctggtttttgtttagttgttttcaaatgattttctgttaattataaccaaaataattttgacttag<font color="green"><u>AAAGTGGTTTATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTTTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAGTGGTTTATT</u></font>taacatgggaacacgccaactcaaagtgttgactatgtgttaacattttttgactagcatgcaaaatcaaggacaggagttacg<br>ggaatatgaatggcattttgtcaaagattttctctaatatgcctgcttcattttgagaaaatatgtatttggtagaacatcttgtcatcacctctaattg<br>atacttctataatgtggtagtgatgggaagcataatgtgactggagagtcgacagtccttctgtaggagtatgtcactttgcttttccagtgaataacac<br>tgactcaaagcaaagataatttgaaaaccagaaaaaaggatgggtggataaaattggagatggggcagaaacattagaagctcatggcttctaaaaaaaa<br>aaa	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	15976571	15976572	1001403	0	+	pAlu11-16059148;1104685628913; RIP_Alu_chr11_015_01	NA;NA	NA;NA	SINE	Alu	Ya4b	cagcctgggcaatagagcaagactccatctcaaaaaaataaaataaaataaataaaataaaataaaataaaaaataaaaagcatacaaattataaaggaa<br>taaataatgtcatctgttcatatataattgtttacataaaaaatcctaagggatttacaaaatactagaactaataagtgaattaacagtattgcaatga<br>acaataaaaaataccaaaatcaatcatatttctttatactagcaacaaacaattaaaaaataatattcaaatatatatttataatagcatcagataataa<br>aatacttgggaataaatttaactgaaaaaagtattcaacacatctacactaaaaacaaaacaacatttgtaacttaaagacc<font color="green"><u>TAAATAAATGGAGGAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATAA<br>ATAAATAAA</font><font color="green"><u>TAAATGGAGGAATA</u></font>atttcctgaatcagaagactcaatattgttacaatgtgattgttcccaaatttacctacagattcaaccaaattcca<br>ataaaaattcctcaaagttttttcatataaggtgacaaactgactttaaaatttatatgaaaaataaagcagtaggacaaactaaaacaaacttgaagaa<br>aattagaggattcaaactaccttaatgaaaactaaggctgttaaagtggaaaacgatagttttttcaacaaataccgccagaacaagttgatagacacat<br>tggaaaaaaatcctgcatcttgtatcacacattatatacaacaattagagatgaatcatgacttaaatcaagaaagaaaaaactataacactcctctaaa<br>tatac	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:SOX6:NM:033326:13/16	
0	chr11	48889702	48889703	1001404	0	-	pAlu11-48964719;1104685619728; RIP_Alu_chr11_048_01	NA;NA	NA;NA	SINE	Alu	Yb7	ggactgctttgaggacttcgttggaaacaggaatatcttcacataaaatatagacagaagcattctcagaaactactttgttatgtgtgcattcaactca<br>cagttttgaaccttccttttgatagagcagttttgaacctctcttcttgtagaatctgaaagtggatatttggactgctttgaggtcttcgttggaaacg<br>ggaatatcttcacatgaaactagacagaagcattctcagaaacttctttgcgatgtgtgcattcaactcacatagttgaacataccttttcatagaccgg<br>tttccaaacactctttttgtagaatctgcaggcggaaatttggactgctttgaggcctcctttgcgaacgggaatatcttcacat<font color="green"><u>AAAATCTAGACTGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>A<br>AAATCTAGACTGAAG</u></font>gcattctcggaaacttctttgttatgtgtgcattcaactcacagagttgaaccttccttttgatagagcagttttgaaatgctcc<br>ttttgtagaatctgcaagtggatatttggagcactttggggcttacggtagaaacgggaattcttcacataaaaactagacggaagcattctcagaaact<br>tctttgttatttgtgcattcatctcacggagttgaacctttctgttgatagagcagttttgatgcactgtttttgtacaatctgcaagtggatattttga<br>ctgctttgaggccttctttgaaaatgggaatttcttcctataaactctagacagaagcattctcaggaacttctttgttatgtgtgcattccactcacag<br>	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr11	60901789	60901790	1001405	0	-	pAlu11-61396087;1104685019270; RIP_Alu_chr11_060_02	NA;NA	NA;NA	SINE	Alu	Yx	tattcaacatcagctgggtgtcctacaattcgattcaattctgacactacatggagttagcatcagagcccacaggttaagtaaggctcagtcccacaag<br>aatgtccccacttcaaatgctaatcgcaagtctggctctctggtacttctgacccactggctatgaatcagagattcccacaaccctctccttgggttca<br>gtaatttgttaggatggctcatagaactcatgaaaacagtttacttactagattgctggtttattataaaaggaaagaactctagaatagccagatggaa<br>gacatgcacagggcaatgtatagaaaacagccaggaagcttccatgtcctccctggtgtagaccaaaagtaatattctaagtcccccaa<font color="green"><u>AAGACTGAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCGCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGACTGAATG</u></font>aaccctcctctcggccaaggggattccaaactaaacctgaaagactagttcaggtcatgattggaaggggtgtttggacatgcttcatt<br>atactgtcctccctttggaattcaggcacatctgaccagtgtgaaaggaaaataaatcttggatcgccaagtgagtgtgaacccagaaaatttgagacag<br>gtctcagttaatttagaaagtgtattttgccaggttgagaacacgtgcctgtaacaacacagcctcaggaggtcctgacaatatgtgctcaaggtggtca<br>gagcacagtttggttttatacattttagggagacatgagacatcaatcagtatgtgtaagatgtacattggtttggtccagaaaggtgggactactctaa<br>	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr11	65260065	65260066	1001406	0	-	pAlu11-65753620;1104685201932; RIP_Alu_chr11_065_01	NA;NA	NA;NA	SINE	Alu	Yc1	aaaagaagtcagaccatgacaggaaacagggggccaaacatgcctcactgtgccaccccttagaatttaggctaggcacaaaggcccttcaaaaattata<br>ataacaaagtacttccctttcccacataggaaagaaatagctcctctgttcaacctgaacacctagtcttacaaaaaactttttgttaaaaaggatcccc<br>agaggatcaattacaacccaaatggaagagcccctatcaggtattgttaagtaccttccctgctgttaaacttcagggaatcactagttgggtacacctg<br>tccaagattaaatctgtttcttatgaatccctgacggcataagaggaggacaccatgatttacacctgtgagctcctataagactta<font color="green"><u>AAGGTGTTGTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGGTGTTGTTTC</u></font>acaaacacaaagataaaaaacatgatgccatgggcatagatgcattaattttctcatcctccaaattataattttcctgttgacctc<br>ctacttaagtttatgtcttctagattccacataaagatgatgctggcacaaggtttcaacccatcccatcttatgacctgaaaaatgaaaatatcctgtt<br>ggaccccttagatcaggtatccagagattaccagaggctaggggcatgggagagtgggaaatgggaagatattgctcaaaaggtacaaagtttcagttag<br>acaggtatattagagttctctaaagggacagaactaataggatagatgtatatatgaaggggagtttattgaggagtaatgattcacatgatcacaaggt<br>	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr12	22015064	22015065	1001407	0	-	pAlu12-22024050;1104685706556; RIP_Alu_chr12_022_02	NA;NA	NA;NA	SINE	Alu	Ya5	tggttagagcaggggtgtgccggggctgtaagtggtagagtttggttggaatataaggaatcagtgaagatgggcaagctttgtgaagactttaaatgac<br>agagtgacaacatcagtgagtcatgggaggtttgtgtgtgtggtaaagctgtaattggagatgtattctggaaagattaacatgatatgtatgtgtaaaa<br>tggttcaggtgggagaggccaattagaagattgatacaataattaatgattgatataataactaataactatcgatacaataacattactaatacaataa<br>ctaatctaaaaggagaaaagaggcagaaaggaagagatggaggccagtcattgctgagtgtatcgtaaatgattgaatatttgtat<font color="green"><u>AAGAATGGAAGGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAATGGAAGGGA</u></font>acagagagacagtgagtgatgaattcaagactaactccaagcaaggctttaagtcagaggcaccagtgcaatacatagg<br>aaagttggaggtggaattagtttaggagcagggaaagagaagaaatagactatgggtagtttaaatttttattatgcctccaaggcactctaatattatg<br>aattttatataagaaaaaagtttagattttaccaaagtcctaatgatatgtagaaatttttcttgaccaatatcaatattctaggtttttcctactgtcc<br>ttcaaaataatgtctaaccctcactgtatttgtgaagcagacatattctaattacctgcctatttatctccactccataatgttctctatgctccttgct<br>cctggaa	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr12	59990415	59990416	1001408	0	+	pAlu12-61420894;1104685241273; RIP_Alu_chr12_059_01	NA;NA	NA;NA	SINE	Alu	Ya4	ctctattttatttcttaagagcaattcctagcatttcaattgttttctgcttaaaactgttttatatcacattaacacatgatctccattggaacaatca<br>atatcaatcaaatttaatttatgattcccataactgtagaatttctttttcccccacttttaacacatggctgaagttttaatttttttaaaatattttc<br>tctactttgtctatcagtatattacctaaaactatgttttttaaaagttcgttttttaagagagtctccaaaatatttcaaacctagatgaatatttttg<br>tgaaacaaaaggaaataaattaggaaaaggaagatggatttcaaaaggaaaacacaaaaagcatgctttccttctttttattttgatt<font color="green"><u>AAAAATTTTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAAATTT<br>TCTC</u></font>aatgaaaaattttcattacgtgtatcttgaacaaaaaagtatttcaaatattatttttagaatatttatattcataacacattttttctcccctgc<br>atgtttataaggatctaatggaacagatgaggcaaagaccaacaaatataaaattaatgactagagggacttgaaaaatacaaaactacagctagatagg<br>aataagttctagtgttctatagaactgtagggtaactatagttaatatgtaatttcaaatagctagagggcggatattgaatgaccccaacacaaggaaa<br>tgataaatgtttgagatgatggataagctaactaccttgatctgatcactatacattataagtattgaagcattgctacgtactccacaaat	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr12	84141870	84141871	1001409	0	+	pAlu12-85550686; RIP_Alu_chr12_084_01	NA	NA	SINE	Alu	Ya4	tatatctcatgcagtttatagaattgggaaatacctataaattatgagaggaaagtagcctatagtttagaagatttggggcaaatatataaatctatgc<br>ctacagaaaatgaaaattgccccttttgaaaacagagtagaaactaaaatcaaccaatggtcaggagaaaatatttgcaccagggataacagaaaaagaa<br>ttataaatagtcaaaaacaaaaaaggaaactagaatccagtagataattgaagaaaacaaaaaagatattttacaatgtacaaactaaaattattaaata<br>attataatgttccatttcactagcaaagatgtataaattaagaccataattagacagtattgttatcaaattatcagcagtt<font color="green"><u>TAAAAATATATGCTCTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATAA<br>ATAAAAAAAAATAAAAA</font><font color="green"><u>TAAAAATATATGCTCTCT</u></font>tactgttgaccaggactcagtaaaataagcaatctcataaagtatgtaattggtgagacctttta<br>aaaccatttgacaatatagattatatcaaattctttaaaatatttatactattagatattttattcttaattccatcttttaaaatggattaattattta<br>tgcagacagcaaacatatgaaaaaaagctcatcatcactggtcattaaagaaatgcaaatcaaaaccacagtgagataccatctcacaccagttagaatg<br>gccatcattgaaaaatcaggaaacaacatcctggagaggatgtggagaaataggaacacttttacactgttggtgggagtgtaaattagttcaaccattg<br>tggaagacagtgtggca	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LRRIQ1:NM:001079910:24/27	
0	chr12	86394955	86394956	1001410	0	-	pAlu12-87803763;1104685533884; RIP_Alu_chr12_086_02	NA;NA	NA;NA	SINE	Alu	Yc1	aaaagagagcaatatgtgtgatataaaatgtgacagtagcctgagggtgatgctgatattgctcctttcccatccggaacatgaactaatgacacacagg<br>ggctagaagctcagtcattcgagacaggcacactaaatagaaatgacacaagcaaatagttgaacaaaaatttcttgtaaagaaacgcattatcatctcc<br>aaatacttacagaaaaccaatattatgaaacagacctaagcttaaaaataataaaaaataaaacaggagaaataatattgaagaaatgcagttaatcagg<br>taaagttaaggaaagcttgaaatagaattaatatattcagaaagatgagagtatatgctagacagaaaatgcaaagaaatttgtagaatat<font color="green"><u>AAGAAACAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACAG</u></font>tattgaacaaatgcacctataagaatgaagaaaaaaatgaaaggaaaaaatgcaaggaggggaaagaataaagggaa<br>gaaaggaaaaaaaaggaaggaaggaggaagaaggaaagaagcagagatggagggatggaggaagaaagaaagaaaggaaaaaagagtgtttagttacatg<br>aaactaaaatcttaggtgttctcaaatcagcagttgatgttggatggagggagaagagcaaatgataccttctgtgtcctagtttgtgggtttataggta<br>taacctgcttctagattctaacaaaaaacattaaatattttgttagaaatatttatttacacagcaaaggtatattaggtggctaatatttggcaaactc<br>cattttaggtacta	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr12	96687534	96687535	1001411	0	-	pAlu12-98096334;1104685531076; RIP_Alu_chr12_096_02	NA;NA	NA;NA	SINE	Alu	Yh9	attcaggtacaccccacaggctagcagtttagtaccagtttctagatgacaggagatgagtagacaaggagctgagcaagctatgggtgaagtccggaat<br>ccaataaaaatgggtaagttccaaggaaacaggaagttcacaattgcgcagatttcttctaatgctctcctcccagggcctaatgctatgggaatctctg<br>ctgtcgatgtcgggtacagtatgaaatggaagacatacagactctgcctttgtggtacttctgtacaagcaggaaagaaaaaattctaaggcactgtgat<br>ttaaaaaaaaaaacaaactacaggggctatggagaccaaacgggtagacctagacttggctgcagggttagaggaagtgtctt<font color="green"><u>AAGAAAAGTATTGTTTA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGGT<br>GAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAAAAGTATTGTTTA</u></font>aactgagattgaaagtaggattaatgctggttcaggaaaaaagggaacagacactccaggaagagaatgttctggcgctcc<br>ccatatggataggtaagagttgtggctgggagcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcagatcacgaggtcaggagat<br>cgagaccatcctggctaacacagtgaaaccccatctctaataaaaatagaaaaaattagccggaagtggtggtgggcgcctgtagtcccagctactcggg<br>aggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagcagagagagcaccactgcactccagcctgggcgaaagagtgagactctg<br>tc	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr12	129990164	129990177	1001412	0	-	pAlu12-131163186;1104685140167; RIP_Alu_chr12_129_01	NA;NA	NA;NA	SINE	Alu	Yc2	ctgaacaatagagaaaaattattaaaagaaaaacagtagaatatcagggacctctgggacaataaacacagcctaacatttatgtcttcgatattctggt<br>agaagaggagagagtgtggggctaagacaatctttttaagtaataataaccgtaaactttgcaagttcaataaaaaacataaacctacatactcaaaagc<br>tgagcaaatcccaaacaaaaatccatgcccagagacatcataatcaaactgcggaaaactaaaggcaaaggaaaagtagcaaaagtaggcagagaaaaag<br>agcacattacctataggcagacactatttaaaataactgaagatttctcatcagaaaccatggaggcaagaaaaaaaacatttttcaaaaa<font color="green"><u>CTAAAATAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAACA</font><font color="green"><u>CTAAAATAA</u></font>aataactatcaacccagaagtctacatccagcaaaaatattcctcaggaagaccagacacggcggctcacacctgtaatcccagca<br>ctttgggaggccaaggcgggcagatcacaaggtccaggagattgagaccatcctggctaacatggtgaaaccccgtctctactgaaaatacaaaaaaatt<br>agccgggtgtggtggcaggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtaaacctggaaggcggagcttgcagtgaggggaga<br>tcatgccactgcactccagcctgggcaacagaccaagactctgtctcaaaaaaaaaaaaaatatatatatatatatatattcttcaggaagatgataaaa<br>tgaaa	UCSC;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr13	58294897	58294898	1001413	0	-	pAlu13-58333517;1104685359979; RIP_Alu_chr13_058_01	NA;NA	NA;NA	SINE	Alu	Yg6	ccgctctttgcaataaattttactgctgctcattctttgggtccgcactgcctttatgagctataacaccgtgaaggttggcagcctcacttctaaagcc<br>agcgagaccacaaacccaccaggagagacaaacaactctggacgtgccactttatgaactgtaacagtcagtgcaaaggtctgcagcttcactcctgagg<br>ccagcgagaccaggaacccaccggaagggacaaacaactccagacgcctcaccttaaaagctgtaacacttacagtgaagctctgcagcttcactcaaac<br>ccagcgagaccacgaacccaccagaaggaagaaactcggaacacgtccgaacatcacaaggaacaaactccagataccatcttt<font color="green"><u>AAGAACTGTAACACTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAACTGTAACACTC</u></font>actgcaaggtccgcaccaattctggacacaatagtacacttcccaacagtattttaaatttgttttagtattgccaatttga<br>taggcaaataaatgtcgtaatttaaaatgagaaatggggaaaacagctaacctaaactattacggaaagggaaatagcaagtgctccataaatgagtgag<br>agaaggagggtgactgaggatcagagatatttagcaattctgggtaaatctcaaaagattcatgaagttttgcactgataagagctggttagccttccat<br>ttttattccatattggtccagggatagaataaatagaacctcaaaagtccaaatgggaaaaattatatcccaattttattaactttataatagtattacc<br>aa	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr13	60685420	60685421	1001414	0	+	pAlu13-60724055; RIP_Alu_chr13_060_01	NA	NA	SINE	Alu	Ya4b	atagctgtgtctctgtcatgtgaggaaatcatgggaaggcggctgttggcaatgcagcaagagagccctcaccagaaccgaaccttgtggacaacctgag<br>cttgaacttccatccttcagaattatgagaaaatcaatttctgttgtttaagccagtctatgatatttttgttatggcaggttaaacttactaatacact<br>cctaggtttattaacatggatccaagttcactgtaacttaactttaatgctttgaaagcattgaaaataaacttattccttcaaaaactctattaaccac<br>caaaaacattaatatgcttcaaattcccatgaagtaaatgcattaaacttcaggaaaacatgaggcttattaagttagtgtgtaa<font color="green"><u>AATTTAATTATTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCCTCTCAGAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AATTTAATTATTTTT</u></font>attatagagtataaaacatactgtataaattttttttaaaagatgataactttacagtcaaatggtaggttctgagaggag<br>tttaaatagtactttgtgtacttaggtaaatggtctcctctggaaaaaacgatatcagagttgaaagaaaaaagtacatatactacagaaaaaattctac<br>agactaaaccataaattattattttaaaaaattactactagaggcattaattttatactccttatattaactcagtctttatgtttgaaatgagtcacaa<br>tgcagtgatagaatgacttttacctgccattctatgccaattatttggagttgttagatgggataatggatgcttttgtctcttttgctctaataatagt<br>aatt	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	66801472	66801473	1001415	0	-	pAlu13-66840092;1104685500433; RIP_Alu_chr13_066_01	NA;NA	NA;NA	SINE	Alu	Ye5	actccacagacatgtctgaaaagaaaaatgggcaggttaaggtgaggcaggtcaaagtgaggtcgcctggagtgaaaaaagtgatacgcaagtgatgatt<br>gtatccctagacctctcgtcaaatcagccagtcagtgacatgttctgcatttggccatgtactgtggaatatccaaataaatataggacacaggctttct<br>gctcaaagagcttaaagttcaagtcacatgccaacatatacagcattaaagtatgaacaataataacttaagagaaaaataggatgtaattcaaatggaa<br>tggaccaacttactgtaaaactcctgaaatgtttgagggctttctgcagaagattgaagttgatctggttcataaaggatgtta<font color="green"><u>AGAATACAGATAGATA<br></u></font><font color="red">TCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGA<br>GGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAATACAGATAGATA</u></font>aagaaaaggtgttagagaataccatggaaaaacaggccagaataagcaaagctgttacg<br>ttagcaatgagtatgccttgtctttagaagaaaggaggaatacggcctgatgaaatgtcatggaataatttgataaatgtttggctaagaaggagtagat<br>ggctcatggaaaatattgaaaaagtgcagatgtttggacttgatctgttagataataaggaaatactgaagaaaatacaatttcatgcagagctaataca<br>tattaatgtaattcccagctactgcctggccattgtgcaggatgttatctcgctaaaataatttcccctgctttatagttctgaaggaagaggaagtctc<br>ctggagttatattatctaggattac	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr13	77549689	77549690	1001416	0	+	pAlu13-77588325;1104685165797; RIP_Alu_chr13_077_02	NA;NA	NA;NA	SINE	Alu	Ya5	tcaagttttctaggaatagtgaaactagttaaaccaaatatgagagcccttttcaccaatgaggaatgagttcttttcatctactagtagtacttttcat<br>catttttcacctgctagaatggcaaaacaacaataataataatcatggcttggccattgtatagctaagtactctgttgataagaccataaattaattct<br>actttgtgataaatttgatagtatctagttaaatttaaaatgcaaaaagcatatgacctagtagttatatttcggctatctattctagagcaatacatgt<br>gatgttttcaagtaaaaggaagtatataaaagatgtttattgcagtcttggctttaaaaaaaatagagaaactttaattgccat<font color="green"><u>AAAAATGGGAATTGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAATGGGAATTGTT</u></font>aaacaagttttgacatattaatgctgcagaatgcactgcagcacttaaaaagagtaagataatagacagccaaaataaaattgct<br>agatcctatgttatttgtattttaaatttaatcagacattgtcacagacagtgtcaaattcatcacaaagtagaaccaagttataatcttaccagtagag<br>tatttacttatgtcatttatttctagaaagttctactagatgaattgttagaactacattccaattagcaccatgacatagagtaatacttttctataaa<br>tatgcaaaagaaaatattcacaaatataaaataagtgtaaatgtgtaaaaagaaaaataaacactaaattacaccatatggcctgatatgcatgaatag	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr13	79670344	79670345	1001417	0	+	pAlu13-79708980; RIP_Alu_chr13_079_02	NA	NA	SINE	Alu	Ya5	cttgaacccaggagatggaggttgcagtgagtcgagattgcaccactgcactccagcctgggtgacacagcgacactctgtcaaaaacaaaaacaaaaac<br>aaaaaatttataaagatgacatcttgccatcttgcccaggctggtctcaaagtcctgggctcaagcactcctcctgccttggcttcccaaagtgttggaa<br>ttacaggcatgagccacggtgccccactagcctgactttaatattttcatgaggcaatgcttcaatgctaacctccaatataatttcatgcatattttca<br>ggaaatacatgatgttttgctataaataagtcattggtgttatctgtttctactttgcatatagggatgaagagccagccattgtt<font color="green"><u>AGAAAGGCAATGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AG<br>AAAGGCAATGTG</u></font>actcagaggcaagacaaagataagatccttcgtctctggtattcagagcaggtcctcaatttatggaaatagtgacattgttccattt<br>tccccgcatcccagtgaaagtattcaagtgactgtttacacacaactggtgatgttcacagttgtagcacttttgccctcaatgtgttatatctatagga<br>attcataagttgaaagttagtaagtggagatgcttttgtattgaaatccgatttctattaaccaagcgaagaggaaactgaaggtctatttattctagtt<br>ttagacacacttctaaaaagtttggctatctattgtgctcacaacactaaaaattaacaaataagtagaaatagtgccttagagggaaatagtgcctt	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	21086495	21086496	1001418	0	+	pAlu13-21118494;1104685715564; RIP_Alu_chr13_021_03	NA;NA	NA;NA	SINE	Alu	Ya4b	accttcctccatgccccgcctcttcatcttctgcagggctcttagaggccatgcatgccagcaggcatagctagggtaggtctcttgttgacggagagct<br>gctgaggagaaacacacaatctacatttcactgactttcttgtgttaagagactgagatttttgtggttggttgtcacagcagctggcatggattacctt<br>gactaatacactggctatctattaatattccctatgtaaattctccaatgcagctctcaattatttactgtctatcattgccatcactttgaagaacatt<br>gtacagcaaaatgaaacccaatattatattattaaaagactgttgttgaggctttagctcagtaagccatattgcatgccctgat<font color="green"><u>AAGAATCAATAGGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGTTTTGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGAACATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAATCAATAGGGG</u></font>aagtttctcttagttctagtgataataaaagacccctcaccttgtacccagcctgctcttttggacactctgcatcttggttgt<br>gatcatgttttcctcagttctgactctgtggctcatgtctagtaattgtgtgggctttctgatctgcattattctagttttctacctttgttttcctgcg<br>acaccacaatttcttgctaaaaaataaaaacaattccttttttaggtgtttattcaaatgtctcaaatattttttggtaaagaagctgatataaagatat<br>tttaaaatatgtagacttttatcattttgttttatttatttatttttttgagacggagtcctgtgcttcttgcccaggctggagtgcaatggggggatct<br>c	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr13	40756211	40756212	1001419	0	-	pAlu13-40794835; RIP_Alu_chr13_040_01	NA	NA	SINE	Alu	Ya5a2	cattctgtcacccaagctagagtgcaatctctgcttactgcagcctctgcttcccaggttcaagtgattctcctgcctgagcctcccgagtagctgggat<br>tacaggcctggctaatttttgcatttttttttttttttcagtagagatggagttttgccatgttggccaggctggtctcaaactcctgacctcaggtgat<br>cctcccacctcagcctcccaaagtgctgggattacagtcatgagccaccgtgctaggcctaatcagctaacttttaatttttttgtagagatggtgtctc<br>cccatgttgcccaggctggtcttgaactcatgggctgtaaagttctaatggaggctacagataggaaagtgttgatagaattaaggta<font color="green"><u>AAGGTTTATAGA<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCC<br>GCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAGGTTTATAGA</u></font>aaagttagtgtgtttgaacacaatgtaatgtg<br>gttgcgtcttacctgattgtgttatggggatggacattgtacccaactggggaatgtttcccccacctagtgctgtaaaacaggaggcatgtcaatctgc<br>cctttaagcaatattatttgaacatgctaaacgggaacaaataagattgtcagaggccgggcgcggtggctcacgcctgtaatcccagcactttgggagg<br>ccgaggcgggtggatcacgaggtcaggagatcgagaccaaggtgaaaccccgtctctactaaaaatacaaaaagttagccgggcgtagtggcgggcgcct<br>gtggtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcg	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	41838089	41838090	1001420	0	+	pAlu13-41876724;1104685158428; RIP_Alu_chr13_041_03	NA;NA	NA;NA	SINE	Alu	Yb7	tttctcagtttgaacaatcttggcattcttaaaataaaactcttaattatatgcattatctctttattgtatgaataatacatgaatatttgctttttta<br>tttttggctactaaaatatttgccaatattaaatttttctcttggataaatattcaggaacaaaactataaggcagttatttctgtttgttgtcatgatc<br>gagttttgggatcagagctatgtaagtcttaaaaaaatgggaaagtttcagattttttctttgtctaaaacccataaatatcacagagattatctatgtc<br>ttgaatgtttgttgtaacttttctataaaattaatcaggccttatccactttcagggtgtaaatctttacctgtgttttcaatt<font color="green"><u>AAAAAAATAGTTTTTC<br></u></font><font color="red">GGGCCGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAAATAGTTTTTC</u></font>tatctcttcttgagcaaattctgttaattttaatttcctacaattattatagtcataagttttttacacag<br>tattcctttatgaaaaaatctgatctctatgtagggttataaactctctaaaaaattcccaatattatgcagttgtgctttctattctcacaggttagtt<br>tattttaacatctattcaatggtacatcttattcattctgatgcttttatttttttctaaataatttatttctgattattatttactcctttttaatttt<br>gtttttttagcttcttaagttgaatgcttttttgatttaattgaaatttttcttatgtgataacaatgttaaaagtaatggattttctattgaaagtgac<br>attggctatattt	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr13	86190965	86190966	1001421	0	-	pAlu13-86229585;1104685253903; RIP_Alu_chr13_086_01	NA;NA	NA;NA	SINE	Alu	Ya5a2	tatctgcaaatagttgtgccctgagcattacacataaaactaatccaaatctaaactcattataatccttgaaaaatatattctactgtatacattccat<br>attttaccataaacatttcctattgccagtcaccataaaaaggaaccccaaagaaatgtaaaggtgcatcttctatgcactattcacattaaaacagtca<br>agaaatatttttgattctacctcctaaatattttataaatacattaaatttcttccatacttagtatatttctttagttatggttttcattatttcatat<br>cagaaaaataaaaattttcattgcttctttttattcagcttccaaactaatacagacacaaatatacatttatacactaaaatt<font color="green"><u>AGAAATGTTCAGTTAA<br></u></font><font color="red">CAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA<br>ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCG<br>AGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATGTTCAGTTAA</u></font>aagtaa<br>cctttatttaaaattctgatagcaattgcttaatggctctgcataacctttgtaccaatctatacttctagtatttcttccaaagtgttatattttttat<br>tttttgtgctgttgttagctaataatagtaatacatagaaaaagtgttcatataccctccttttaatatttttttattgtcataagtaaatttcccagac<br>aatgttcaagtcatgatataaaagcaggtatatttgtcttgtttctgaatagagggttatctcttgaattcagtagataggagaaaatttgagatagaat<br>tttgggtatgtttacacaagcaaattagaggagattcaaaaaagtatttaatcagattaattcattaaaattattaaa	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr13	91059288	91059289	1001422	0	+	pAlu13-91097923;1104685252576; RIP_Alu_chr13_091_02	NA;NA	NA;NA	SINE	Alu	Yg6	aaaagcagattgtatcatcttaaatacctacagctatctagggctgttcaggggactttgtggggtgagccaagagaaaatgttataattaaatagatat<br>gaggtaaaagagaaccaatatttgctcatttaaattatatttagttttgtgtaataagatttagaaagttccaaactgggatgatctgagctggtttcaa<br>tggtatttgctgttaatgattggacatcagttctgtgtatttgctttcccctttgatcatagggaaggtaaatttgtttatttagaatttgtttatttag<br>aattttgttagactaattgaatcagactattaataaaaagtcaaattcagtgtgacaacattgtaggtgtgtgccatcaaggcataa<font color="green"><u>AATTTAGATTTGA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAG</font><font color="green"><u>AATTTAGATTTGA</u></font>ccagcaatctctaatgacacaggagttggtgatagtgtccttgtcagggaaggaaaatcaatctttcaggcatatt<br>aagtgaggtaaatattttgttgaagaggttctatcactgcaaattccagttaacagcaccagctctctgaaattaacaggccatgtaattctgaatctaa<br>taagattcgaatgctgtatcatattaggtgccagtagctaaagctctgagagccgggagtggtgggaagatgtaaacatgatcagttagcttctttttga<br>cagcaccttggaatgaactgacacaggcaacaaatgggatagaactgtgaaatagccaaaaacaatacaagaggctgagataaaaacagttcatttggca<br>acgtactgatt	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:GPC5:NM:004466:2/8	
0	chr13	92626420	92626421	1001423	0	-	pAlu13-92665044;1104685252182; RIP_Alu_chr13_092_01	NA;NA	NA;NA	SINE	Alu	Ya5	ttttgcatcctgaaactttactaaatttgtttatcaaatctaggagcatttgggcagagattatggggttttctaggtataaaatcatactatctgcaaa<br>catatagtttaactttctatcttactattatgatgtcttttatttctttctcttgccttttcctctagctaggacttacagtactatgttgaataggaat<br>ggtgagagtgggctttcttgtcttgttctggctctcaagggaaatgcttccagctttttcccattctgtatgatgttggctgtgggcttgtcatagatgg<br>ctcttactattttgagaaatgtttcttcaagacctactttgtagagcctctagctttttaacatgaagctgtgctgaattttatcaaa<font color="green"><u>AACCTTTTCTGC<br></u></font><font color="red">GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAATGGTGAAACCCC<br>GTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGG<br>GAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACCTTTTCT<br>GC</u></font>atgtattgagatgatcatggggtttttgtttttagttctgcttatatgatgaatcacatttattgatctgtgtgtgttgaaccaactttgcatccaag<br>gaataaagcccacttgattatggtgaattaagttttttacatgtggttggatttgggttgctagtattttgttgaggatttttgcatctgtgttcatcaa<br>ggatattggcctgaagttttattttgtgtgtttgtgtgtctcttccagattttgctatcaggatgatgctgccctcataaaatgagttaaagaggagctc<br>ttcctcatctatttcttggaatagtttcagtaggaatgatatcagcttttctttatttacctgtagaaattggctgtgaatccatttggt	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr13	98880629	99254797	1001424	0	-	pAlu13-98919250;1104685250318; RIP_Alu_chr13_098_02	NA;NA	NA;NA	SINE	Alu	Yc1	atggggggtgccaggggctgggggaggggaaatggggagtcagtgtttcgtnnnnnnnnnnnnnnnnnnnnaaaatcaatggctctcacatccgttagga<br>tggctattgtcaaaacaaaatcacaagtgttggtgaggaggggcagaaatcagaacccctgtgcgctgttcgtgcgaatgtaaaacagtgcggcctctat<br>ggaaaacactatggtggctcctcagaaaattaagtctagaatcaccttaggacctggcaattccacttctgggtatgtatctaaaagaattgaaagcagg<br>gacttgaagagagatttacacaatcatgttcacggcagcattattcaccttagctgaaaggtggacgcaacccaagtgttcatc<font color="green"><u>AACAGATGGATGGATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AACAGATGGATGGATA</u></font>aagaaaacgtgatatatgcttacatcagaatatgattcggccttcaaaaagagggaaatcctgacatattctacaacag<br>gatgacccttgaggatgttatgccaagtgaaataagccaatcatgaaaggataaacactatatgaatcctcttgtatgaggtccctagagtcatcaaatt<br>cttagaaagtagaatggggggtgccaggggctgggggaggggaaatggggagtcagtgtttcgtgggtacagagtttctgtttgggaggaagataaagtt<br>ctggagatggatggtggtgatggttacacaacaatgtgaatgtatttaatgctatgtaatcatgtttaaatggtaaattttacattatatgtattttacc<br>acaat	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:CLYBL:NM:206808:2/9	
0	chr13	107467032	107467033	1001425	0	+	pAlu13-107505668; RIP_Alu_chr13_107_01	NA	NA	SINE	Alu	Ya4	ttccttggtacacattgactagtaacagtgtcctataggaattaacacactttatttcccataattatattttactttatatcttgctatttaattatac<br>tgcataagtgcttttccgtatgtttgttaaaacttgtggaatagggcattttacacttaaaaaatagccaaacatttgttttgcagctcatacctttcct<br>tcagcacatttcacattatatgattattgtttcatcaaatcattcatatcttttactatttgagtgcaaaattaactctcattacaaaaagaatagggag<br>aagaactaccttggatttttatttcagtaacctggctttccttctgagcaggcaaaacataattaaaggtcaaacctggttt<font color="green"><u>AAAGTATGTTCTAATCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGAGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAGTATGTTCTAATCTG</u></font>atcgttaggcagtttgtctccagtggatgagcattcttgcactctgattgtttcatgtaggtggtagctggttgcaag<br>aaaggaggtgggtggctgatatgacgggtgggttcagattttatgacacttcctcatttccaggtagcattcttttcctacatgttgttaactaagtata<br>atcctcctcctgcctcctgggtgtggcttgtgcaggagtcattcttgacagttatctatgtttggtgccactcgtgagctgcctcctttcaatttggaga<br>atgctccaggtgtgctctttggcttccctggtgttgcaggaagtcagggaccccgaatggagggaccgggtagagctgtggcagaggaacataaattgtg<br>aaga	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	112041800	112041801	1001426	0	+	pAlu13-112080437;1104685140405; RIP_Alu_chr13_112_02	NA;NA	NA;NA	SINE	Alu	Ya4	tattccatctgttatggtagtctgtgatcagtgacctttgatgttactattgtaattgttttaaggtgccacaaacagtgcccatataagacagtgaact<br>tcacggagaaacattgtatgttctgactattccatcaaccaatcgtctccccacctccctccttctcttcagtcctctctattccctgagacacaacaat<br>attgaaattaggccagttaagaaccttacaatggcctctaagtgttccagtaaaagaaagagtcgcacatatctcactttaatcaaaagctagaaatgat<br>tagctgaaggaggaaggcatgtcaattgctgagatgccaaaacctaggcatcttgcaccaaatagccaagttgcaaatgcaaagaaaaaa<font color="green"><u>TTATTGAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAT</font><font color="green"><u>TTATTGAACAG</u></font>gaattaaaagtgctactccagtgagcacacaaatgatgagaaagtgaagcagccttattgctgatgtgaa<br>gaaagtatgagtggtctggacaggagatgaaaccagcacaatattcccttaagccacagcctaatccagagcaaccccccaactctcttcagtgaagaga<br>gttgtggagactgagagaggtgaggaagctgcagaagaaaagttggaagctagcaggagtttagttcatgaggttgaaagaaagaagccgtctccataac<br>ataaaagtgcaaggtgaagcagcaagtgctgatggagaagctgcagcaagttctccagaagacccagctgaggtcactgatgcaggtggccacaataaca<br>acagattttcaacgtagaag	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr13	112568969	112568970	1001427	0	-	pAlu13-112607592;1104685140540; RIP_Alu_chr13_112_03	NA;NA	NA;NA	SINE	Alu	Ya5	gcccaactcggaagaaaatctcataaaagatacaaaagaatcaacaggtagctctgtttgatgacgttcatggcctggtggcattcaggaattattcaat<br>taaaataaatgaagacaaagaataagttctagaaaacttaaagcttttaaaacagtgaaataatatttgaattggttctcaagatagacctggtaaaaac<br>tgatttaagtgatgacgaaggataacagcagtgtttagtaaagaggaatgaaaacgactaaagcaggtaaataatggtgcacaggacacatagcaggact<br>tttgtgtttgaacccagcagtctgagggacaaacacacagggagagagaggtcaggctaaacaaggaacgaagccgatttctgttt<font color="green"><u>AGAAGTCACCCAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>GAAGTCACCCAGA</u></font>aggggctgctgaagagggactttctccgaggtcagcgctggtgtctgcttgtacggctagttaaatacctgaggcatttaagcaggg<br>atggtctctgacatctaccgaatgcctggtgtggctctctcaggaagcacagggccccaccgggcctcccacacatgcctgtgctgcctttaatttaaaa<br>tcgagggaagctcccatgaatccagtcaattcggaaaacatccctggctcaatgggccaccctgacatggcaaccgagggaacacagcaaggatgtgcgt<br>caggaggcgcacacacccttctaacacagagctagctctggggtgtgtggggcagcagcggctaacagcgtttctaccgacaaagcacacaggaattca	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:ATP11A:NM:015205:25/30	
0	chr13	89745657	89745658	1001428	0	-	pAlu13-89784280;1104685252837; RIP_Alu_chr13_089_04	NA;NA	NA;NA	SINE	Alu	Yb7	tatacaccaagttttcttgagataagaataaattgaatagaaccatgataacctatcatttatattcctctatttacaacctaaatattctatgctacat<br>ttggtagttacacattattcccttaccaatactcttcactccactacattttagtagttctccaaaacaaactcaagtgtaataataagtttgttatttg<br>tactttacagttcaatagctgcagaatcaaataggaatgatttcttgttttcttaatgtagattttaagaatatacataaatatttttgttaaatttaag<br>aggatcatttatttgaattgcataaagaaaaatacaatttaaaagtaaattttcttgaactaaatgatcagtgttttttcaagcatg<font color="green"><u>TAATGAAACTGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGTCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCATAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>TAATGAAACTGCA</u></font>cctctgtccttattttatgattaatacataagttagttttaaatatttaaacaaaatatacacttgcttgtttacgga<br>ctaaacattcagtagctttttcttaagccgaggatgttttgcaagtaacacagtaaaatgtattaaagaattcaaatttcagattgtggaagaagcttca<br>tttgaattcaatgaaaaaatttttgaatctgtaaagcagatcattctcttaaattttctttctgacaaaatagaagaaaatcgcttatgttaaagcaaaa<br>ttgatgctttaaacctagaagttttaaatataaaatagtttcataatttaacatttgtaaatacttaggggtatgctgaaagtaatttagcatgaaaaca<br>tcaacagaa	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr14	39382714	39382715	1001429	0	-	pAlu14-38302987;1104685636736; RIP_Alu_chr14_039_02	NA;NA	NA;NA	SINE	Alu	Ya4	ctaaagggcacattgcattaagcacatgatttacagctgtgatggtttagcatttgctctgctacttgagaataatggagagcaggttcttttaactaaa<br>gatacaatcgatcctgggagagcaaggagcaaggagtcagcaagtctagacacattccagagccatgagccctggattctatacaatccatgaggggttt<br>tatggcctgggctcagattatggtgtatcagggtattcttccaccctttagcacagagcttggcgctccaaaggccacaaggggttttagaccctggacc<br>ccagacattttccaggactcttttacattatgtcagacatgcaagccctgcctcagcttctcccaacactcagcttttcccaaaa<font color="green"><u>GAGTTGATAAGAATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>GAGTTGCTAAGAATC</u></font>tcttttctagatcattttcaatgagtttgtattggtagaaaatactagtatctagatttattctgtattccagttg<br>tccatgaagaagacaaatgacacctggctgtaaaacttaacaagatatgttgtccattaagtgaaaagtgcccagcttgcaggcatgagatacaagaata<br>aagcttcttcaacaagattacttcagcacagcatgtgtcaaataagctaaaccactctattacctctcagaaattatagctgcattatcaatatccaaag<br>aacttgtctacaatttacatttccagaactgggcatacaatagagataatttcaaacaaagatgtctttattttccctgggatagacatgaagatgaagt<br>agaaaagat	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr14	37429395	37429396	1001430	0	+	pAlu14-36349682;1104685636232; RIP_Alu_chr14_037_01	NA;NA	NA;NA	SINE	Alu	Yi6	tcttgtttgggaggagcaggagatgaggtcaggaaggtgggagatcacactgaatataattattcaatgccaggctgaggattgtcaatctatttttctc<br>cctataataacgttagggtaaacaaaataaaattatttcaagaaacatatacaatgaaataataaaacataaatgaaaactaccagacaaggggaaatac<br>aaattaaaataagaagacaagaacagatgacattgctaaggaaaaactatttataagcctcctagtggccaaagcaaaaaggaacataagattgataaaa<br>ttattactgtccatgagaaaaaaactaattctatgagaaaagtgacaccaaatttaaaagaaatttcttatgtgggttt<font color="green"><u>AATAATGTATAGAAAATTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAGAAAAAAAAAAAAGA</font><font color="green"><u>AATAATGTATAGAAAATTCTTT</u></font>taatcatatagatttatttaaatgtccttttataaaataagagagaaaatactgtgtatag<br>tggtgctttctaagtagaatgtgcatacagtcacctgggatctcattaaaatacaaatcctcttttgattactatagccttatagtatgtatcaagttgg<br>gtaatgtgatgtctccagctttgttctttttgcttaggattgctttggcaattcaagctcttttttagttccatatgaattttaaagtagtgatacggtt<br>tggctgtgtacccacccaaatctcatcttgagttgtagctcccataatccgcatgttttgtgggagggacccagtgggtgataattgaatcatgggggca<br>gtttcccccatactgttc	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr14	55507679	55507680	1001431	0	-	pAlu14-54427953;1104685122315; RIP_Alu_chr14_055_01	NA;NA	NA;NA	SINE	Alu	Ya5a2	aaaagcattagatttggatacagacagatttgttcagatccccaactctgcccttaactaaccgttttacctcagaaaagtaactaaagccctctgagcc<br>ccagtttttaaaatcaatgcattcatttaaaaaatacttattggtgaacaaagagacttagttcttgtagctctgcagctcaccctctgggttggagtgg<br>agggatgagggagttgctcaatctgggtgctggtccagtgagtggtgggcagtcagagggaggtacagaggagagaactgaaagactttgagtaactgga<br>ggctggaggtgcaatggagaatggtcccaaatgaggctggagaaggaagcagaggttggattatgaaggctttttaagctttgttc<font color="green"><u>AAGAATTTGGACTT<br></u></font><font color="red">CAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA<br>ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCG<br>AGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTTGGACTT</u></font>tatttgaagggaaa<br>tgaagagcaatcacagggtcttaatcagaagaatgtgacccagtttgcatcctacaaggatctctctggctgctgtgtggggaatggattggatgagaat<br>gggtgggagggtaagaccaggagcagcaatgccagctagcagaaggtggttgcaatagtgcatgaaagatcatgtggcctggaccagggacaaggcagcc<br>aggcaccaggaaagtgggtggactccagggatgtttagaggttgggatcaacagggctggatgatgctgatgggcggagtggggagaggcaagaatcatg<br>agcaggactcaagtttgggcaacagaatggacagtgatgctattaactgagacagacacacaggacacaagg	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr14	59645253	59645254	1001432	0	-	pAlu14-58565528;1104685123410; RIP_Alu_chr14_059_01	NA;NA	NA;NA	SINE	Alu	Ya5	catttttgctgtgtcctcagatggcacagagagggacaaatcaagctctctggtacctcttctcataaggggactagtcccatcataccaaggacccacc<br>ttcatgacctaattacctcccaaaggcctcatctcaaaataccatcacattggggtttaagactgtaatatatgaattctggagagacacaaatattcag<br>tccataacatgctgaacatttctacctggacactaacctaagaaaagaaagctgcaatctacggagacggagaaagaaaagtcaaacttgaaaaggcaag<br>taaaaggggttatcaaacaattttgtgaacaattatgtctgttaaaaaaactattttctacttttcttctgtaataagttggttttt<font color="green"><u>AAAAAATCAATAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAAATCAATAT</u></font>tacttctactattgttgctatcataaaattagaaataaattttgtatttgtcttaaattcattcaatctgtatataatatttata<br>tgtataaattttaatttcttctttccccccacaggaaagttccatctccttacacaggttttagccaggctatcttaaaaactcaaagctccttatttaa<br>agtgaaacacaaaattgaaaagttccttatctcaaaaagggttttttaaaaaaactctttagtaagttttaactattgctttagtatgttttacagagat<br>taatcctaaaagaataattatcaaaataacctgtcacccaatggtttgatgatttttaatccatggattcatttttttgtaacactaaaaggaaagctct<br>ct	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:C14orf135:NM:022495:1/10	
0	chr14	94094375	94094376	1001433	0	-	pAlu14-93014647; Ya5-MLS68; RIP_Alu_chr14_094_01	GTCATAAGCTGAACACCAGGTTTG	AGCACAGGCTCCACTTATGCTG	SINE	Alu	Ya5	atttaaggaagcagggataagttgcctgaccaggaaggccagggtggatgtggggaagcagagggcttgactgcctctctgcccctaggaaataccactg<br>ggccagatggggcagctgctgtgacaccactgatgtccccggcagggagccgctttttccagcatcccagaaactgcctgaactgtgctgtaggcatgaa<br>tcccactccctgacaccctcctctgctccactgcatcctaaattgcaacccagccctttctcaatggctgtcttggtctcccattccagcacaggctcca<br>cttatgctgccctcctgctaactgctcccaatccccttcccattccctggattccaaatggagccaggaaattaatctgccctt<font color="green"><u>AAAAAGGCTGTCCTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAAGGCTGTCCTTG</u></font>ttttgaatttgattggcaatgcaataatggtcatcatgaaaaatatgggaaagtaaaaaaaacctggagaagaaaataaaatcatt<br>tgcaaacctggtgttcagcttatgactagatataattggtttccttccagtcttgtaagaaatgggtatgtgctcatacagaacagcaacaacaaagctc<br>ttccagtcttggtttggatggaggtaggaagactatagatgctacagtccaaagagagctccatgcaaaaattccagagtaggtggtcaagaacaggtct<br>cctgattcttaaatgctttactcatgtgaaagaggactgaaaggtgttgagaggtggagactgagaaggaattacaaagaggaaggagagaagtgctt	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	58	NA	224	NA	intergenic
0	chr14	59811154	59811155	1001434	0	+	pAlu14-58731441; RIP_Alu_chr14_059_02	NA	NA	SINE	Alu	Yi6	cccttagattaagtgacttggaggaacttgatttagtaaaatggccagacagccttttggagcatcaacattttttttaagaagtttaactgtaaagaga<br>agagaggcacatgggtagctcgaggggaataagtcacatgaaaagttatttttaatgggtaacatgggtgacacttgtggctttaaaagtcacactccaa<br>ctgagaaatgttgataaaaaggagaaaaaggaaaatagtgtaacattcctgaaaaaactgtcatttaagactcctttgaaacatgggcaccaaagctagt<br>ctagtagaggatttattatcagtgagaggacagagtcctattacagcagaaaagtaggaggagagggttatgaaag<font color="green"><u>AATTCATTGAAATGGTTCACTCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>GGAAAA</font><font color="green"><u>AATTCATTGAAATGGTTCACTCAT</u></font>ttattgatcttttttttctgtagtatccaatctgccattcattgtctctattgcaattttcagttcagta<br>aattgcttctcatttccatgaaactattttcagagtacctcttttttaattgacagtctgcaattgttttattcattcaatgtcatttcatatcttggtt<br>agtttctaattttgagctaatgaatactgagtctccctctttttaacttctgaattaaaaaaaaagtcatcttatttttctctgttcatttttacacttt<br>atttagcctaagtatctgaaattggctttgctagaaattacaattagttcactgttgttttctttcagtcccagacaaaaaagaaaaattttagatttct<br>ttcttt	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PPM1A:NM:021003:1/6	
0	chr15	24423617	24423618	1001435	0	-	pAlu15-24290570; RIP_Alu_chr15_024_01	NA	NA	SINE	Alu	Yc1	cacaacatcctcaccaggagtagattccatctcaagaaaccactctttgctcatccataggaagcaactcctcattcattcaagtttaatcatgagattc<br>cagaaattcagggaaatcttcaagtttcacttctagttctgttgctattcccaccacatctgcaatgacttgaacccctcaaagtcatccatgagggctg<br>gaatccacatcttccaaactcctcttggtgttgatattttgacctcctcctataaatcatgaatgttcttactgacatctagaatgacatctagtccttt<br>ccagaatgttttcagtttactttgcccagatccgtaaaaacaatcactgtctatggcagctacagccttgtgaaatgtatttcttaaat<font color="green"><u>AATAAAACTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATAA<br>ATAAATAAATAAATAAATA</font><font color="green"><u>AATAAAACTTG</u></font>aaagtcagtttctccttgatctatgggctgtagaatggatgttgtgttagcagacatgaaaacaacattc<br>atctctttgtacatatccattagagctcttgagtgaccaggtacattgaaaatgagcagtaacattttgaaaggaatgttttttctgagcagaaggtctc<br>aactgtgggttaaaaatattcagttttgtaaacgtgttgacacccaggttttattgttggattttttgagcataggcggagtagattagcagaattctta<br>agggccctgggattttcaaaatggtgggtgagcattggcttcaacttaaagtcagcagctgcaattagcccctagcaagagagtcagcctgtcatttgaa<br>gctccgaagccagacaatg	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GABRB3:NM:021912:3/9	
0	chr15	42289307	42289308	1001436	0	-	pAlu15-42081141; RIP_Alu_chr15_042_01	NA	NA	SINE	Alu	Yb7	aaacttgttccctagaattcaaggaagagccaggcgtatttagaataacataaaaacttaattcgaaaactcacattttgtgattaccagattagggaaa<br>tggaatggtgtttggaaggagaattgcactagttatagaggaaaatgaccttctgtgagagttggatgccctgtggttgctcttagattaatttgcctcc<br>ttacttgtcactgatcacacctacttcttgttgcagaaaaactgttcctttccatagctatagtcttaacctgttgtctaaataatgtagctaaatcagc<br>tgagcacatgggaatcagagactaaaagaagcacattaggcattcaataaatatttgctgaatgaatgaaatgctcagtaagcattaa<font color="green"><u>AAGATGATGATA<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT<br>AGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGA<br>TTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATGATGATA</u></font>atgacaat<br>ggttaggatgaagaagaaaaggaaaggggacagaggaaggcatgaatagctgtaactctaaggcaattggctcaccaattacactgctgaagcgataaca<br>taacaatcacagttttcaggtactcggatgctggttctccagtttgtgtatcatctcagatttttggtttagattttcccttaaactgactcccttttag<br>tcctccatttaatgtctattaatccacagagaaaatgaaggaacaagagattaatagtagctaaaactttccaatgttttctttgtgcaaaggcttatct<br>cattttactctcacagtctctcatagagagggactattattatacctgttttacaaataaggaaactgagccttcgcagc	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	58444536	58444537	1001437	0	-	pAlu15-58236395; RIP_Alu_chr15_058_01	NA	NA	SINE	Alu	Ya5	actgtttctttcattaaacaaagttattaatcagtcaggagagagacttttcacattctgaatttacaaactgtgctttcttaagttaaatggcatgtta<br>ggagtatttctgatatgaaattggaaacttgcagacaccagaaggcattgcttatctttgtaaatacacatgttccaattaaaataggtactaaaatatt<br>ttggtggcacctcaaaactcccaatttagatttaatttagattaaaacacttactctttttaataaagttataaaattaattattaaaattgcctattga<br>agattaaaggcagtggaacgtttattttccttacaaaacaattttgtcttcaataagtgtgattgtgttaatcaattatgc<font color="green"><u>TATTAAAAATACAACTGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAATTCCACTGCCA</font><font color="green"><u>TATTAAA</u></font>gtcatgacagtttttataattatagaaattatacctagctgcttatatagccataatcctgcaataagtataaata<br>attatctctattaattcagtttgcagttactctctattaaatcccgagttaaatggcaatttggggaccttcatttaaaatcctactaaatctctgttgt<br>tccatctgactgccaaagccccacatatgcacctcctactgttgattccagaaaccaatttatgaataaaatagtttttaaaccacaagtatttaaaagg<br>tccatttaagcttgaggtttgaggctctcaagaaaaaaggaaagagagtgtacacattgggtagaggatgctgacgaaagagatagaacaaatcttggtg<br>tctgg	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ANXA2:NM:001002857:4/14	
0	chr15	33883614	33883615	1001438	0	-	pAlu15-33675447;1104685379493; RIP_Alu_chr15_033_01	NA;NA	NA;NA	SINE	Alu	Ya5	ctaagagttttagttattgtagcattataagtttcaatatctaggaaagcacaaatctcctgatgacttttctacttttgaatttccctgacttatttat<br>gtatatttattcttcaaaaatgtcttttacatcagcttgtctagttgccaagaaaccatttggatgccattaaatgtatcgattattttagtaacaattg<br>atacctgcagtactgagtctatgtaatattgaaaaattcctttctagttatagcatcttagcatttccacttagtaacatgtcgtttcctttatatcaat<br>cttacatatttattgttttatttactgctaggtatcttaccattttgttgcctttttaaattgaaaagttttgaaatgttcattaaa<font color="green"><u>AATACTGAAACTG<br></u></font><font color="red">CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATA<br>CTGAAACTG</u></font>acatataaatacagaaatcacattttgagacagaaaagagattacaaataaacaacacttaatcacacaaacaaaaatcagacttctcatt<br>tgcaacgtctgaagttacaaaatgctagaagtcaaaaagagattactgatggaaaaaaatagtcatatatcaggaaggaaaatcattttagactaaaaaa<br>aaaccagagaggaatcacagagtcactctgtgtcaaaaataaataaataaataaggactaaccgaatataaatgagccaaaaatcagacttcataatgat<br>gaacgatgaagaggagaagggagcatgacatacatgtcaaatgatagatagatagacatagacactgaaagataacagaaatatgttatatgaatg	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr15	37478898	37478899	1001439	0	+	pAlu15-37270743;1104685378596; RIP_Alu_chr15_037_03	NA;NA	NA;NA	SINE	Alu	Yc1	aagctgtaccttgtgctagatagggaatcatacccttcccaaatttgcctgggaaaaagcagagactccaagcaaggcgtgaggtcccaggctgctgagc<br>taagcctactattctcatgatcagggcagctcaggtttctctgcagtggggaatagcaaactctctgaaatatctaatatcaaaaccgtatgcctttaag<br>gtgaatagtcatggacacattctcctttgggagaaaaaagaaaaaagttctactaaaactaaagtcccagctgatttccgacacactcagcaatgaacaa<br>attgttaccaggccagccttccaggctagaggttctgacttcactccctcaggaccctcctcccaagtggaaactaacttatttt<font color="green"><u>TAAATGTCTGTGTTC<br></u></font><font color="red">GGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGT<br>GGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACT<br>GCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATAAAAATAAAAATAAAAAAAATAAAAAAAAAAAAAAAA</font><font color="green"><u>TAAATGTCT<br>GTGTTC</u></font>cctgtcaatgcaggcagacattttaaggagactttagacactatgcattgttacatgaataaccacatctgcatgcaaagcagtaagagatact<br>aactccaatagaccaaatgtgtgcttttccccattgctttcaactccaagaatctgaacaaacagaaaaggtcattctgatcttttttcttcaaagatta<br>acaataggaaaacaggaatagtatattttcttatgataaaagcagaagcttgttggcaacttcttttgaattcttactaccaaccacagtactggtgtta<br>aattaaaaaattactcatgacacttgtgtcaaagaacacaatttcaacaaattgagttttaaagatctaattggcttttactagtgattca	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr15	79822721	79822722	1001440	0	-	pAlu15-79611584; RIP_Alu_chr15_079_02	NA	NA	SINE	Alu	Ya5	ccaatttcgaaaacgttaaaacatgagaaaatgggcctcttaagatgaaaaagttataagacgttaaggaggaaatcaaatacacattaataagtgatta<br>tgaaaatgagactattacatatgaaaacctatgggaagagtaccaaatttccacgagaaaaaacaaaaccctaaatgttctggttttttactaagacaaa<br>aaaaaataagccctctaggaaagtgaaagaacaagaaaacagacatgaggaaagacaataataatgaatggagacaaaattagaaataaacaaatctgga<br>aaaggataacacatgtcctaggaagagattatataaaacagaattaactcctccagaatattaaaaaatatggacatctgcccagttagaaaa<font color="green"><u>TAAGCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAGAAGGAAAGAAGT</font><font color="green"><u>TAAGCTT</u></font>aactttgaagccaatttctatcaaagagtacaaccagaggaaacctatggctaaggagattcataacattc<br>gtacatatatatatatatatatatttttttttcacgttctgaattcaatatcactttattggtaaaagaatattgtgcctgaacaggaattaacctacca<br>atggaagttagattattaggaatctattaataaatatataagaatagataacataagaaaaacaataatagataatgtaagaagaatgtcattgcaagac<br>attttcaaaatgtatttaacatccatggatgcacctagaggacattatgctaagtgaaataagtcaatcacaaaaagacaaatactgtatgattccactt<br>atatgaggtatttagagcagtg	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	76723727	76723728	1001441	0	+	pAlu15-76512598;1104685618267; RIP_Alu_chr15_076_01	NA;NA	NA;NA	SINE	Alu	Ya5	acgatgtcaggagatcgagaccatcctggctaacacggtgaaacctcgtctctactaaaaatacaaaaaaaaaaaaaaaaaaaattagctgggcatggtg<br>gcgggtacctgtagttccagctacttgggaggctgaggcaggagaatggtgtgaacccaggaggcagagcttgcagtgagcggagattgcaccactgcac<br>tccagcctgggtgacagagcgagactctgtctcaaaaaaaaaaaagattctattcacaatagtaacaaaaaccttagaatatatctagcaaaatatacgt<br>aaggcctttcatgaagagtgttgctatggtctgaatctgtcttccaaaacacatttgttaaaatttaattgccaagataatatt<font color="green"><u>AAGAGGTAGGGCCTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAGGTAGGGCCTTT</u></font>aaggagtgattaagtcataatggcaagtcctcatagatgacattagtgtcttataaaagggcttgtgtggggggtttatc<br>tgttccttctgctgcatgagaacatagcatttgtcccctccagaggagccagcattcaaggcaccatcttggaagcagataccaggccctcactagacac<br>tgtacctgctggtgccttgatcttggacttcccaacctccagaactgagaaaataaacttctgttgtttgtaaattacccagtctctggtattttgttat<br>agcactacaaaaggcctaagacaaatacaaaaatactcaggaagagctgactaaattgaaatatagaccatatatattatgaatgggaggactcaatact<br>ataa	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr15	98628514	98628515	1001442	0	-	pAlu15-98403706;1104685149308; RIP_Alu_chr15_098_01	NA;NA	NA;NA	SINE	Alu	Yc1	gtggaagcaacccaaagtgtccacagatggatgagtaggtaaataaatatagcgtataggtataatggaatattattcagccttaaaaaggaaaacaatt<br>ctgacacatgctgtaacatagatgagccgtgaagacattatgctacgtgaaataagccagtcaccaaagaacaaatactgtgattccacttacgtagggt<br>agtgaattcacagagacggaaagtcgaatagcgctggccagatggctgagagggaggagggaatgaagagttgtctaatgggtacagagtttcagcttta<br>caagatgaagaaagttttggggataggtagtagtgatagtgtataacagtgtgaatatatttaatgccacttaattgtaagcttaaa<font color="green"><u>AATGTTTAAAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AATG<br>TTTAAAATGG</u></font>gtaaaattttatgttatgcatattttaccacaatttttaaaaacatcctacatatcacctgccttttcagtatccataagctcatcaagg<br>taggactatgtctacaccatcaacattttgtcagtgcctggtacgcatgcaggagatgatccagaaatatttgtgtagtcagtgaatgcataaatgaatg<br>actgatgccatataccagcatcctttgcgaaggattcagtgctgaagtcacagaaacaaacactggctttacttttttaattcctaggcaaatttgcttc<br>tggagagccttttgtattctaagcacatcccacggatatggtgtattaaactctgtttgaaagtgtttatgcataaatataataatacacttacact	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:ADAMTS17:NM:139057:4/22	
0	chr15	98630341	98630342	1001443	0	+	pAlu15-98405546;1104685149304; RIP_Alu_chr15_098_02	NA;NA	NA;NA	SINE	Alu	Ya5	tagaatggatttctctatctctgcaaaaaagtcattgggattttgatagaaattgcattgaatctgtaaactgctttggataacattgatatcttaacaa<br>taagccttccactccatgaacatgatggctttccatttatgtcttctttaatttccttcattgatgttttacagctttccatgtaaaactctatccctta<br>tttggttaattcctaagtattttattctttttgatgctgctgaagacagaactgttttcttaattgtcttttcagattattgttagcatatagaaatgca<br>actgatttttgtggttggtttagtacgtggctactttgcaaagaatttattagcattctctctgtctctctctctgtgtgtgt<font color="green"><u>AAGATTTAGGGTTTTCT<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTATAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGATTCAGGGTTTTCT</u></font>acatgtaataaatatgtcatctgtgaacagagatcattttactacttcttttcttatttggaggccttcaatttctttttct<br>tgcctaactgctctagctagaacttccagtgttatgttgaacagaagtagcaaaagcaggcactcttgccttgttccagattttaaagaaaaagctttca<br>gtctttcaccacggagtgtattattagctgtgagtttttcatatatgacctttataatgttgaggtagtttccttctattcctagtctattgagtgcttt<br>tatcatgaaaggctgctcaattttatcaaattcttttcctgtataaattgggatgatcattttctcttttcattttgttaatcaagtatatcactttttt<br>t	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:ADAMTS17:NM:139057:4/22	
0	chr16	22753519	22753520	1001444	0	+	pAlu16-22773455;1104685117330; RIP_Alu_chr16_022_01	NA;NA	NA;NA	SINE	Alu	Ya5	tagacaaatcatgtgtatacttaatataccattttatactgctattcatatcagtacatatagtagatataatatgctttatattccattttataacttg<br>caattttatttaacaatgtgatgcagatatctctccatgccaataagtatatctacagaatcattttaaatgctcagaattattttaaatagcatctagt<br>tggatagatatactattatttatacaatcattaaccaaatcgcctactgatagacatttagattgctcccactttttgctctttaacaatgaaaggacag<br>cagcaagtatcgtacccaatgattttcctcagaataaatttatttcagaggaattttggggtttgtgggtaaccatgcttt<font color="green"><u>AAAAAGTATCCATTTTTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGTGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAAA<br>GTATCCATTTTTTG</u></font>atacaaattaccaagttttccccacccctatggcaatagagctgaagcatttatacttccctagcacagtctgaaaggactttttt<br>ccacatccttgtcaacattgactattagcaacctatttatttgctctttgtcaatctaatgcatgaaaactatctccttttaatttgaattttggggtat<br>ttaaaaatatttattagccatttgcattcattttctgaaatttttggttaattttttccctgttggagatatttctttccatttttaaaagaggatgttt<br>aatgattaatgctgcttatactggattgactttatcttttagtgttttattacttcagatgtttctagtgagctgaatttggcttggttctacat	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:HS3ST2:NM:006043:1/2	
0	chr16	71632812	71632813	1001445	0	+	pAlu16-72810817;1104685106508; RIP_Alu_chr16_071_02	NA;NA	NA;NA	SINE	Alu	Ya5	ggccacctttccaaagagtgggcttttttgattcacctttgcttctcccattcactgttgagtccccatttgaaggggattcacaagcagtgctctggtc<br>ctcagccagaccctgccctgttttattctgtaattatttcctaccttcaaacaaacaatgaggaagaccacacctccctccagttacacatctgggagtc<br>cgcaccaggatttcctctgtcacccaatttttccactgtctggacaatttttatagtttcaccagcaagggcaaaatatattgacagtcctttcccacaa<br>ggtgtaaaagttctctgctttccccaaatatacctctggatttcctatctgttgaaggaaaaaccagcttcgactgcctccgtt<font color="green"><u>AAAAAAGGGTGTGCAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAAA<br>AGGGTGTGCAGGGC</u></font>ggctgaggtgaccctactaccgtcatttctgccattctttacttgaacaacattttttaagtgggcaaaatactatcttatgaaaa<br>acaaaccaacaggggcccaggtaacacacattcatatagtcagttacacagactgaaagtcttcatcaatgcccatctcaattacgttatcaaataacat<br>aaggggacactattcaagattccatcagaacagagatggcatttaaaagcagtcgcttgagtagtgacaccaacctcctgccgcacacactgaaatccat<br>gagcctcttctaaagtgtccaaaagttgacctgacactttaacgctgatgcagatactccacaaaaaaaagcggagctgttaaaagggaagcagaaac	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:ZFHX3:NM:006885:1/10	
0	chr16	82223876	82223877	1001446	0	+	pAlu16-83405281;1104685107429; RIP_Alu_chr16_082_01	NA;NA	NA;NA	SINE	Alu	Yb7	tcagtgtcctcacttacagaatagggattttggtaatgaaggccaccagctccgtgcatgacaaggtgctgaatgctttctgtttattatcacgccgaat<br>ccttatgatttctttgtgaggtgcattctactagaccctccagttctcagataaggaagctgaaggttagagagctaaggtaatgcacccaggttacagc<br>aggttatcctcaagttccccacggagtagtgacattttgtcaccattgatgctatattactgataatgatcaatagataggttactggaaaggggtccag<br>atccagatcccaagagagtgttcttggatctcatgcaagaaagaattcagggcgagtccatagagtaaagtgaaagcaagtttatt<font color="green"><u>AAGAAAGTAAAGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>TAAATAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGTAAAGGA</u></font>ataaaagaatggctgctctataggcagagcaacagcatgagctgctagttggccatttttatggtta<br>tctcttgattatatgctaaacaaaaggtggattattcttgggttttccgggaaaggggtgggcagttcccagaactgagagtttctcccccttttagacc<br>atataggtaacttcctgatgttaccatggcatttgtaaactgtcatggcactggtgggagtgtcttttgacatgctaatgtattataattagcatataat<br>gagcagtgaaaatgaccagaggtcactcttgttgccgtcttggttttggtaggttttggccagcttctttactgcaacctgttttatcagcaaggtcttc<br>ctgatctaaatcttgtgct	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:CDH13:NM:001257:8/14	
0	chr17	27917973	27917974	1001447	0	-	pAlu17-30742559;1104685008941; RIP_Alu_chr17_027_03	NA;NA	NA;NA	SINE	Alu	Yg6	atagccatgaacaggataaacaaggttcctgtcctcaggatgcttagacaaatgctctaattcagctcttcttttttcatttcctgctcaatttattgac<br>ttctgccaccccttcatttgttgccctttcccagcatcctctaccttcagccagaaacccctgttttctcagtagctttgtcctgttaatatcccagaag<br>cctacagccgcatcatctgctcctttttgatttcctccattctgtgaacatggatggagcacgggctgccctcagtcccagctctgccgctccccacctt<br>ggatgcagaggctcccattcctctgttggaaagatcacacagatgtgtctcagaggcttggtacacagtgcctgcctgatttggttaaa<font color="green"><u>AAGAAGCTTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTGACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGACATGGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAAGCTTAA</u></font>aagagaaagaccaaagagggaagcttttacaagttgctttttaaagctttggaagtttgtgtttgaggcttcaaacagataactaatt<br>aagttttagcactccctgtgattcggacaacaaccgtaactactgtcatgttactactattaattgattctatttggttccaatgacacgagtcaaaaaa<br>tgttttcccaactgtggttggactcagttgactttccaatcatatcactcccctccttcagtggctactcaagatcaggtctgaggtcactcccacagcc<br>tacacgatgtggccccacctcctcactctgcattttcctgcacttacctgcaggctcacctgcaggccacaccagctttccttggcttcctcaaggaaag<br>c	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:MYO1D:NM:015194:21/22	
0	chr17	63606371	63606623	1001448	0	+	pAlu17-63077263; RIP_Alu_chr17_063_04	NA	NA	SINE	Alu	Y	ggggtttcaccatgttggccaggctggtctcaaactcctgacctcaaatgatccgcccgcctcggcctcccaaagtgttgggtttacaggcgtaagccag<br>cgtgcccagcctatctgtggtatttttagtgtgatgtctagaacttcatatacttttttggattactttaattgtagggctgtatccaaactgatcaaat<br>gctctcggaggtaactatttggagaagtgacttcactgattgattaaaataaatgactggcatggaataagnnnnnnnnnnnnnnnnnnnnactggcatg<br>gaataaggattaaaatatattaatctgaaacatttaaaattgcattaatgttataacagcctaaagcaaaactaatgaatcacataaaa<font color="green"><u>AATCCCCCACG<br></u></font><font color="red">TGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGCCGGGCGGATCATGAGGTCAGGAGATTGGGACCATCCTGGCTAACACG<br>ATGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGCCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTG<br>TGAACCCGGCAGGTGGAGCTTGTAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACGGAACGAGACTCCGTCTCAAAAAAA</font><font color="green"><u>AATCCCCCACG<br></u></font>ctgttgtccttactagtttactttgtgctagacacttttgcatgtatatgcatacaacttttattctgtttttaaactttgcattacatatacattcttc<br>catattatatgatcttcattaaaatagttaaatggctgcataaaaaaccatgtggttcctggaccattatgctgttccctcattccccttttgtttttaa<br>tggaatagagcaaagaacatcttctgtattattgtcaagaatagtgagaggtgacagcgtgctggcagtcctcacagccctcgcttgctctcggcgcctc<br>ctctccctgggctcccactttggcggcacttgaggagcccttcagcccaccactgcactgtgggagcccctttctgggctggccaaggc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	63599913	63600215	1001449	0	+	pAlu17-63105691; RIP_Alu_chr17_063_05	NA	NA	SINE	Alu	Y	tgagccaagttccactttcagaaatgctatgggcaaagcttcatgatgtttatgaattcatacataaagactataaatttcagccaggggcaatggctca<br>tgctgataacagctactcgggaggctgaggaaggacaatcgtttgaggctaggaattagagaccagcctgggtaacacagctagattccccgctgtcttc<br>ccctctaaaaataaatacataaataaattagtgtggtggcatgcacctgtaatcctagctactaggaagcctgaggcagggaggatggtttgaacccagg<br>agatcgaggctgcagtgagctatgattatgcaattgcaccccagccttggcaatagagaaagaccccactctctatttttttaaaaaaagg<font color="green"><u>CTGTAAATT<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACAAGGTCAGGAGTTCAAGACCATCCTGGCTAACATGG<br>TGAAACCCTGTCTCTATTAAAAATACAAAAAATTAGCCAGGTGTGGAGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGA<br>GAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGAGGGCGCCTGTGTACTCCAGCCTGGGCAAGAGTGAGTGAGACTCCATCTTAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>CTGTAAATT</u></font>tctgaatgagttcttaagatgaaatacatcttacttgtgcccacttccttttcttagaaattaactccaaaggccagtcacggtgg<br>ctcatgcctgtaatcctagcactttaggaggccaaggtgggtggatcacctgaggtcaagagagtgagaccagcctggccaacatagtgaaaccccatct<br>ctactaaaaatacaaaaattagcctggcgtggtggtgtgtgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaagca<br>gatcttacagtgagccgagatcatgccactgcactccagcctgggcaaccgagcaagaccccatctcaagaaaaaaaaaaaaaagaaagaaattaactcc<br>aaaat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	14468380	14468381	1001450	0	+	pAlu17-14470710;1104685551722; RIP_Alu_chr17_014_04	NA;NA	NA;NA	SINE	Alu	Ya5	gtgatcgtgggtgtgagtgagctgagaaagctcagtttcctttgctcgtcatggcctcttcttttgagcctctcacagcacaacatgataacaacatgac<br>aggaatatgagataaggagtttgtggaacaaagacacaagctacaagtcacattggattttcaggctaagaacctttattatgcagacaacaaatattcc<br>ataatgtggcctatactacgtaagtacaaatacaggtgaagcatctttgtatggtacacacttcaatttgatcactctgtctaccctgtgtacaaatgga<br>atgcactggacttttatttgtcttactgatattggcccattattattcagtctcctgttgtagcaattgtcactatcttcctctt<font color="green"><u>AAAGCTTCCATTTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAGCTTCCATTTGC</u></font>ttgtgctgaccgtttcctatcttctctccaattgctaaagctcttatattctttgttgagcaggtgatcaacttaggtgacaaa<br>ttcacacttctcaccagctcccttaaaactactgacagcaactgatgtctatggagtgacttactgtatctgtcaagagctctgctaggcacttaacata<br>cattatgtcatttaatcaaaacaatgccttactttaactattattattgttcctgttgcatagacaaaagcccgagactcagtaatactctgtgacttgc<br>ccaaggtcacagagctaggcagggatggacctgggttcaatgacaggctgtatgacttcaagtcttatactttttgatttgagacactgccttagaacac<br>t	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr18	52857192	52857193	1001451	0	+	pAlu18-54491185;1104685560273; RIP_Alu_chr18_052_01	NA;ATCCATCCCTGATTTCATTCC	NA;TTCTCATCGGAATCTACCAGAA	SINE	Alu	Yb7	atccatagtgtacacacgcccgcagcccctccttctgatggtttaacttggagcaatcctcaatggttgtgcatagccagatacacgcactgtgcacaca<br>ggcactgggttctgggtcacctccctggcatcccaggcctctgtctgcttccttcagtgcttccttcttcagccgtccctccctggatcccagccacctg<br>agctccatccatccctgatttcattccttttttttcctcttccagctctagtccacagccttcctccccaggacatgtgattcaagcctgaagcatacaa<br>tgggagcacaaaggaggaggggacagagaaaagaaatgagcatcagccttgggaatgtctcctctgactgtagagtcaggagacatt<font color="green"><u>AAGATGAACATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGATGAACATTC</u></font>actggaacatatacattctggtagattccgatgagaattaagcccattcattcatctggtaaatatctagtgaacatctac<br>catgcatcaggcagagaactaggtgctgggattgtagtggggaaggcaacagttgtgacacctgcccttatgggctcacagtctagtgggctggggtggg<br>gactaagccagccacaaattgtaacatgagcagtgatggaaacaagggcagctgagacccaatagcccagggaaggagtgggcaaggtcaacccggggtc<br>tctgaaggaagataaggagctggatgttggtggagcagttggaagcgggaagagcttctagagaagaaaatagcacgtgtgaggtccctgaggcagaagg<br>gagagt	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;60	NA;550	NA;231	NA;NA	intergenic
0	chr18	60324777	60324778	1001452	0	-	pAlu18-61958756;1104685562324; RIP_Alu_chr18_060_02	NA;NA	NA;NA	SINE	Alu	Yh9	attttgctaagtgaaataaaccagacacagaaggacaaatcctacataataccaattatatggtaaatatagtcaaactcataaaattatggaggcgatg<br>gataggcttatggcgtaaattgaagtaaggacttcacaaccgtatttttctccaaacttaccaaattatatagatataacatatacaagtttttgtatct<br>caaaaaattatataaaaattttaaatttgataaatcattttaagattagaagcaatatctgtcaaaaagattatgtattaatatcttcatggtcatcatt<br>ttgtagttgtacgattttgagtgatttttgtctgcaatgctctgcttctgaattataaagacatctatttattatatgaagattaa<font color="green"><u>AAGCAATTCCTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGTGG<br>TGAAACCCCGCCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTTCGTCTCAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGCAATTCCTTTTG</u></font>gtaaaaatttttaaaaagtgcatagttaaattatactgaaacaaacatattagaagtaataaaaatggaaaaatgtata<br>gacttgaatttgcacaaaataaaaaatgataaggcaaatataaaaatggaaaaaattgtaagtacagtggaaataatgtctttaaaatgcagaaatgcag<br>aaacccaatatacatatgaaaaattctccattgccactaaaatgaaagaaatgcaattcagaccatgtcatttctctccttgaaatctgcgtcgttcttt<br>tttttcaataaaaattgaagtccttatgtattagtccattcttgcactgctatgaagatatgcctgagactgagtactttccgaagaaatgaggtgtagt<br>tggctca	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr18	72082928	72082929	1001453	0	-	pAlu18-73716907;1104685089338; RIP_Alu_chr18_072_01	NA;NA	NA;NA	SINE	Alu	Yi6	tgtaccttgttagtatggtggattactatcttagtacatttgggctgctataacaaaataccataaatgtgtcccttataaacaacagaaatttatttgt<br>cacagttctgaaggctgggaagtccaaaatcaaggcactggcagaattagtgactggtgagggcccactttctggttcatagaaagcatcttctcactgt<br>gtcctcacatggtagaagggatgagggagttctctggaatctctagtatcattcacaagggctgtaccctcatgacctaataactttcaaaggcccatct<br>ccaaataccatcactttgagggctctgctttcatgacttaataacttctaaaggcacacctccaaataccatcactttgagtgtt<font color="green"><u>AAGATTTAGCTTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGATTTAGCTTATG</u></font>atttttgagggagatataaacattcagtctataacaattatattgattgattttcaaatattaaactagaataa<br>acttctggaactaaactcctggaactcctggaataaacttctcatgatcattacacacagacatattttagattttttttttttactgaatgctatttga<br>taatattttcttaaagatctttacatttatattcatgagtgctattggtctatagttttctttttttgcactgtctctgattttagtatcaaggcactac<br>tgacttcacaaaatgaagtgggaagggtttctttctcttctatcttctggaagaaattgtgtactattggtgttaattttttaaatgattggtagatttt<br>gctagtaaaat	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr18	63289851	63289852	1001454	0	-	pAlu18-64923829; RIP_Alu_chr18_063_01	NA	NA	SINE	Alu	Ya5	acacggtattaaaatttaggaatgtctgactcctaaggcccacagttgggcctatttgtagtgtgacttgggacaagtcacttaaccattctgagccata<br>gtttcctcatctgtaaaatggcaatactaatatctaccttgcatttttattctaaatatggctgatacaaagaacacattaaatagtgcttttccatgtg<br>ttggaaaaattatttacaatttatttcaatgaagttcactaataaattatttctttttcaatatatatattcacttttatatatagtttaataaggcaat<br>agctattaatatacacattgaaataatttcaccaatactagtttttttacaatgacaggttttcttacaatgacagattttctt<font color="green"><u>AAAATGACAGGATTCC<br></u></font><font color="red">GGCCGGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAATGACAGGATTCC</u></font>tatacatatatttggagaaattattgagcaaggccaatctaaattacttagaaagttaaaaaataaaatatg<br>taaattaagcttaataatattactctgaaatacagaatacttaaaactttgaaaaatttagtgtttattctatgaccaagtcactttctcacatccaatg<br>aacctattctctctctctcttccataaaaatttctctggtactttcattagtccttttcggaacttttaaaaatttagtgtagctagtattctagttctc<br>aatcaaatgcatgttacacatcaagctaccataatgtactggtttttttttttttattgtgttttgtttgtctaaggcaggtcttcaaaagcatgataat<br>tttcatcaagga	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	34766545	34766546	1001455	0	+	pAlu18-36400538;1104685178894; RIP_Alu_chr18_034_01	NA;NA	NA;NA	SINE	Alu	Ya5	tttgagccctgtaatctttttacaaagatcgacccatgtgattcttatgagtgccccagatgagagccaaggccctaaaggaaaagatggctaacatgac<br>tggattctccaaaaaagtatattgtcattgacattattcatcacatggctacacaaaagtcaatgtcaaaattatttttagaattcggggctagaatata<br>aaataatatgtacagtttagctattacctatctactagacataattaaacattatacacttgaaaaatatataccaatacttttttaaaatgtgcttctt<br>tggtgttcagattataagtgattttcaatttattttaacaattataagtgattgttcaactatttacctcagtttcaagaaatctc<font color="green"><u>AAAAGCAAATTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAGCAAATTTGA</u></font>aactcaagtcatggcaactagatagacaagttttaattcatattttgtcttccccttatcattgaagcagatttttaaaaat<br>tatacattattatttcaagtatacattttagtataaatttctttactgccatagtgtaaaacataaaagaaaagaacagaagagaaggtgtaggggcaat<br>gaataaagggaaaaaattatgtctcaaaaaggggaggatgaaaacaaggggaaagaaaggaaatgagacggcaagaaggaaagcatagcaggctcattca<br>agaggaactcctctgaacctgctgctatcatacattcagaaacacctgtgtttggaaatgaccaagtcattttcagcccaagtgaggggtgcttcaagaa<br>tgag	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr18	1225791	1225792	1001456	0	+	pAlu18-1225790;1104685493412; RIP_Alu_chr18_001_01	NA;NA	NA;NA	SINE	Alu	Yc2	ttttgttcattcttattcttctgcttctttgtactaaattagtgttttctagattatatatgttacaaacctaatgatatattgttataattattacttt<br>gtacaactttatgtcctttaaagaagctgagaaaagaaagaagagcaattaaatatttatgccttgttatattaacctttttagttctcttcatttgttc<br>cagtgaattccaggtactattggtatcatttaattattccaatactgttttgctctaattcaccttatttgtgatattttctaatatatcacatttctat<br>gtgttacaggcccaataatacagttatatacatattattcatatgattgcttttaagtcagttaagaaatttgcaaatatagtttttaaa<font color="green"><u>AATAATTACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGAAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AATAATTACA</u></font>taaacaagtacttttactggcactctattttatcatgtggacttgaactatggtctgagttcactttcatttagaa<br>ctttaatgtttgttacaaggaatatctgcttacaacaaattctgtccatttttgtttatttgaagatgcttttatttcactgtcattttttaaagttagt<br>tttcttggatatatgattatttctcgacagggtttttttttcctttcaatttattactttactttgaatttgactttccactgcctctgtcctccattgt<br>ttctaatgagaagtcagctgcaaatatttcaaagcaaatattaaatattaatattaaatattacagtttacttgaagtgatgggttgtttttctcttgct<br>gttctcagaatttt	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr19	62117342	62117343	1001457	0	+	pAlu19-62101553;1104685154230; RIP_Alu_chr19_062_01	NA;NA	NA;NA	SINE	Alu	Y	cccgtagtcccagctattcaggaggctgaggtgggacaatcgcctgagcctgagaagtcgaggctgcagtgagctgagatccttgcaccactacactcca<br>gcctgggtgacaggcagagtgagacctgtatcaaaaaaaataaaaataaaaaaaaggaaattcatggagaactttggactctccccagacttagctacta<br>atagcctaccaaagaccagcagccttaccaataacacagtcaattaacacatattttgtatgttacatgtattatatactatactcctgaagtaaagtaa<br>gctagagaaaagaaaatgttattaagataatcataatgaagaaaaaatatgttcactcttcactaagtggaagcagatcatcttaa<font color="green"><u>AAGTCTTCATCCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCGCTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCTGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGTCTTCATCCTCG</u></font>gtcatcttccattaagtaggcagcggagaaggaggaagaggaggggttggtcttgctatggcaggggtgtcagaggcaaagaaa<br>acctgtatataagcggactcgcacatttcaaacctgtgttgtttgagggtcaactgtatagtatataatgcaatataatatgtaatataggccaggtgtg<br>gtggctcacgcctgtaatcccattacattgggaggccgatgtcgggcagattactgaggtcaggagttcgagaccagcctgaccaacatggagaaaaacc<br>gtnnnnnnnnnnnnnnnnnnnncagtggctcatacctgtcactccagcactttgggaggccaaagtaggtggatcactggagcccaggagcttgagacca<br>ac	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr19	20537828	20537829	1001458	0	-	pAlu19-20522022;1104685514400; RIP_Alu_chr19_020_02	NA;NA	NA;NA	SINE	Alu	Y	ggttgcagtgagccaagatcatgccattgaactccagcctgggccacagggtgattccgtctcaaaaaaaaaaaaaaaaagtaagcacttccttcttatg<br>taaacactgtgtttgagtaatttccctggatttttctaacacttagtttcaaaaaccaagtaaataactctgacatggaaatcaaagcttgaacctagtg<br>actccaagctaaggctgatattaagcctgcaacaggatgttactaaagactcagtttttttctggggagcctcccctgcacatgtcccagcctgctcacc<br>ccagccatagaaggaggctttatcctgagagaagctacagagccctggaaagctggggccccacaggcagatgcagctgaggtt<font color="green"><u>AAGATGAAAGGAAACT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATGCAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAAGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGATGAAAGGAAACT</u></font>tagagggtcttattgatgatgaagttgttatgttttgtggcactttctacactttgtaaaataaaaaatattaatttatgtta<br>aaaaaatgaattccaaaaaaaattgcaacagcagaaaataccaactaatttaagatctttatggcttgcaaagatgtaagcagaaaagggctttcttttt<br>agggaggagcaaacaagattagaaaggaggtgggaggtgaatggcaaacggagagtgaaaaagtcatattttagatcagaggatgtcttaccctgaaatc<br>agcatgttcttaggagggacataaaatagggttgtatgctgactcagactgagggtagctcaaagttcaggagcctgagggagggagataagcttaagaa<br>g	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:ZNF737:NM:001159293:1/4	
0	chr1	87715307	87715308	1001459	0	-	pAlu1-87235024; RIP_Alu_chr1_087_02	NA	NA	SINE	Alu	Y	ttaaaatttgcattttaaaaagtatttaaaatataaacttttatatcaagaaataagagaaacaaagcaaagtcaaatatacatatacataaaaacttca<br>aaatttatggctgagtttagatataccacaatccacctagaagataggtatttataccagggctctatttctgtgtgactcaaaggcaccaaaagggcat<br>tataaatattaataaaaacctcgaaagctaaaccacatttttatggagttagaagcacaaactgaaagaattaatttgagaaggagacggtggtattttt<br>ctatggttgttttgttttgcttttactgagaaatccagtagttccaattctgtcacaaaaaggaaaattgtatagcttgttgtttt<font color="green"><u>GAAAATGGGTGATG<br></u></font><font color="red">TGGCCGGGTGCGGTGGCTCACGCCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAACAT<br>GGTGAAACCCCGTCTCCACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCCGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAATGGGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAGAAAAAAAAAAAGAAA<br>AGAAAA</font><font color="green"><u>GAAAATGGGTGATG</u></font>cttgggccagatgcggtggctcacgcctgtaatcccaacactttgggaggccaaggcaggcagatcacgaggtcaggagc<br>tcgagaccagcctggccaacatagtgaaaccccgtctccactaaaaatacaataaattagccaggcgtggtggcgggtgcctgtaatcccagctactcgg<br>gaggctgaggcaggagaatcgcctgaacctgggaggcagaggttgcagtgagccaagactgtgacactgcactccaacccgggcaatagtgcgagactct<br>gtctcaaaaaaaaaaagaaaaaagaaagaaaagaaaacggccaatgcatgattgtgtcaggccacacacaaacatgcagaggatcaagaatattgttttc<br>agcaca	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	104855606	104855607	1001460	0	+	pAlu1-104211118; RIP_Alu_chr1_104_01	NA	NA	SINE	Alu	Ya5	atattagtaaagaataaatgataaatgaccaatgattccaccttataaaatttaaaaaaatagaacaaatgcagtccgaagcaaaaagaaagtaattcag<br>aacagaaattaataaaattgaaaacagcaaaacaatatggaaaaattaaaaaaatgctcacttttggtatgataaataaaactgacaaacctgtatcagg<br>tacaagaaaaaaaaaaaggaatgtaaacacacatttccaatatcagaatgagaaaagagaaattactacagatattacagatgttaagtggataatgaga<br>aatattatggacaattctttgccaaaattattcaacttacatataatttaaaaattctacacaaattaccaaattcattttttagtgat<font color="green"><u>AAGAATAGCCC<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCCCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAGCCC</u></font>gtattttcaactgtgtcaccttcagaaatgtatccaaactcgccatgattcacttactatgatacaggaat<br>attaatagttcatacactagaagattgtatgagggttaaaggaattaacacatggaaagtccttcaaatagtatctatcacataatatgagtcatgtatg<br>tgtgtcaccattattaatttccttgattttaacttttttttttgtttgtttttggcttttagggttttttctttcagctaagctgtcctttttaaaatgt<br>gtgaagtgtttaattcaacaatttcattatttcaataaattgtagtttaattatttgatataattttccaaaacattgaagtcatatatatgaattaaga<br>caatccaccagagcatat	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	1574335	1637541	1001461	0	-	pAlu1-1516710; RIP_Alu_chr1_001_01	NA	NA	SINE	Alu	Ya3	ggggtttcaccatgttggccaggatggccttgaactcctgacctcaggtgatccgcccgcctcagcctcccaaagtgctaggattacaggcataagcctc<br>cgtgcccggcttcatgtgaaatttttgaagtgaggtttctttgcatgacactttatttctcattagggaagcatgctagagtgaaagaaaaagaaagaga<br>gcacgaacgtcggaaacggcatcgagaagaacaggataaagctcgccgggaatgggaaagacagaagagaagggagatggcaagggagcattccaggaga<br>gaaaggtgagtcggctgggtcagttgaggactttataaaagggctgtggtagtgtgtcccatcctagaaatgaagaagaatttggcaat<font color="green"><u>AGAAGTCACAT<br></u></font><font color="red">CTGAGCCAGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCATGAGGTGAGGAGATGGAGACCATCCTGGCTGACA<br>TGGTGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCTGGGCATGGTGGCGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGAAGGTGGAGCTTGCATTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAGA</font><font color="green"><u>AG<br>AAGTCACAT</u></font>gtagaagtcacatttggtgcagaagtggtagacatggaaacagcacagtgaacgctggacgaggctgaccaagagaactgtcctgagggag<br>tgagttttcactgcatctggaagtaagaacgggtgtgatttgattgagggaagacaatgaagggatcagaaatctgcatgtccggccgggcgcggtggct<br>catgcctgtaatcctagcactttaggaggctgaggtggttggatcccttgagcctggaggtcaaggctgcagtaagctatgaccatgctattgcactcca<br>gcctggttgacagagtgagactgtctcaaaaaaaggagaagggagatcctaaaaaccttgaaacagtctggaattcgggaccctggactcccaggactcc<br>tggccattagt	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CDC2L2:NM:033529:5/20	
0	chr1	227026554	227026555	1001462	0	-	pAlu1-225332040;1104685074864; RIP_Alu_chr1_225_02	NA;NA	NA;NA	SINE	Alu	Y	agcagacctaccctaaaagagtggccaaaggttgttctctacgtagaaagaaaacaataaaagaagcaagtttgaaacatcaggaaggatgaaagaagac<br>agtaagcaaaaaaaaaaaatgggtaaatacaataaactttcttctcctcttgagatttctaaataatgtttgacgttgaaactaaaactataacattgtt<br>tggtgtgactcttaatgtatatagaggaatacttgagacaagtatgttctaaatggcagatgcaagggatgtaaaggcaggtaagattttttttgcttca<br>cacaaattggcaaaatatgactgtaagactatatatagactacaataagtcatatatagaaaatgtaatacttagagcaaccattaaa<font color="green"><u>AACTATACAAAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAGAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AACTATACAAAG</u></font>aaatatattcaaaaacacgatagataaaccaaaataaaatttttaaaaatgtttgttacccacaataaggcaggaaagag<br>caaacagggaaaagaaaagcagagagaacaaacagaaaacaaaaacataaaacaacagacttaagtcctaacatatcaataattactttaaacacaaatg<br>atctaaatacaccaattataagacagagattggcaaattagaaaccatgacctaaatacagcttgcctaaagacattcacttctaatacaataatataag<br>caggttgaaagtaaaataatagaaaaagatatactacacaaacattgaccccaaaaaacaaaaagcaggactgacaacattaatatcagataaaacagac<br>tacagagc	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr1	232137188	232137189	1001463	0	+	pAlu1-230445829;1104685320621; RIP_Alu_chr1_230_03	NA;NA	NA;NA	SINE	Alu	Ya5	aagcaaataatttccctgataataactagtcagctagatgggttatactattgagttacatgtgcatttatcttgttttacaaattaccattagacaaga<br>aaaaaatcaattattacagagatattttaatgagctgtcttaaaaatacacttcttgttgaagtaaaatatccaaaatgaaatgaatgttaattataagt<br>gtacagcttgatgaattattacaaaatgaatatacctttctttactgcatctagagcaagaaacagaatattactggcatgtaagtgattttttcagata<br>ccactatacaggagatcttattaattttaaaataatcaaaaaagccactggctttccctctgaagcaaaggtagctccctatgcagat<font color="green"><u>AAACAATGTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAACAATGTTTC</u></font>aatgaaaatctaagtggatcctgtcttttacaaagaagctgtgtctagcctggtattctgccaggatgatcaagatagcttacatac<br>attctaatcagtgtatcatgtgaaaaatgggatcttatcatgcttcttggaagctttaggttttctttgtaattttaatatccctttgcaagagctgact<br>tccaggcaagatctctgtgctgaaattcccatatgttatgtatgtttacttgcttttccactagataccttaacatttcagtcatgattattttaaagtt<br>tcattctggtgaaaccaggttgtctctgcatctggttctattgatggctttatttcttcacaatgagctgggttttccttgccctttttttttttttttt<br>t	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:SLC35F3:NM:173508:2/8	
0	chr1	225668901	225668902	1001464	0	+	pAlu1-223987819;1104685057095; RIP_Alu_chr1_223_01	NA;NA	NA;NA	SINE	Alu	Ya5	cttcttatgtgggtgctgcccatgactccccaaaacaattacaacagtaacattggagatcactgatcacagatcagtataacagaaataataatgatga<br>aaaagtttgaaatattgtgagaattacagaaacgtgacacagagaccatgaaatgagcacatgctgttagaaaaatgtcaaagataggctggggcatggt<br>ggctcatacctgtcaccccagcactttgggaggccaaggtgagagaatcacttgagcccaggagttcaagacagtctgggcaacatagtgacagcctcat<br>ctcttaaaaaaaaaaaaaaaagttaaaccaggtatgcctttaattgcagagcattcccaatcactcagcccaccactgctccttt<font color="green"><u>AAGAAGGCTCTTTGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAAGGCTCTTTGTG</u></font>gatgttctgtggttctagccctgcacattcccagtttcctcttgcatgattctaccttccaccgaaacagagcaagatctgc<br>ttaagatcctataaaaatgactttggcatgtgccctttgcctgggaacagctttttcagttgctgctgctgctgtgtaatatgttaggttacatggacta<br>ccattttttgttaaagagaatgacttccaagttcagtaggtgcttcttgaaaatatagttccccgtgatgcaataataattgattctgttatttcctatt<br>cttgttcttatgtatgtgacatatgacatgtaactgagacacagttcctatatttaatatttgttgtttgttccacaatcttttcatagatgggattagg<br>ttg	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr1	93270815	93270816	1001465	0	-	pAlu1-92835741;1104685457968; RIP_Alu_chr1_093_02	NA;NA	NA;NA	SINE	Alu	Ya5	aacggggcatgcatctgatccagatgtgcatcaggtaaaccaagagaggtctgatacaaagctcttcaacctcctaaccctctctaagaagcacagcaga<br>gcatcagaataaatggatagaaaggtagtttgtaaattaaaattgcaaatgctcaacgataataaatattgctttttatctacatgtcatttaatggcct<br>taataaaggtaatctatacagattgcctaagagaaatatttaaataacaagttatttataatacttactatttaaccagaaaaatacgttaatcagattc<br>atgaaggtaaagcacagaacaactctaagttattttataactatgatagtaatacaagctcaaaaatatttaccgaatgtagaatt<font color="green"><u>AGAAAAAGGAATCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAGAAAA</font><font color="green"><u>AGAAAAAGGAATCT</u></font>aattttgaagaaaacactttaagctgtggtgatgggctgctagacactatcaaatgcagt<br>aaattctaccatccattgttctattagtaagaaatgcctgttatctgaacatttccctttttaatccggtaccatataattatcataggatttcatatat<br>tatttcattattataggatttcaattctgtgttcatggggcaaatctggagagccatatgaagaccctgggactcatgtagtaatccaaaatttttgaat<br>ggtgacattacattctattttatttcaatgatattatcacatttcagtgctttgaagactcagtttctagaatatcttatttataatgtacacatggtat<br>ttgattaccaacatatcctattctct	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr1	161027947	161027948	1001466	0	-	pAlu1-159457341;1104685472339; RIP_Alu_chr1_159_01	NA;NA	NA;NA	SINE	Alu	Ya5	agttctctttcaagacttaagctgattccaggcaaatatgttaatagttaaaacccaaaaagagcctggaaccatcagtaatctattagcaccaacaaca<br>aagcatcaaaaatatttatttgtcctcacatgagaacagtaggcatttaatatacaattgcacatgtcacaatatatgtaaaagaaacagacaaaatcaa<br>ttctgacttactcagtaccttccacataagaagcaccaatcaacggttaaagtcacttgagagggtatgctaaaaagttgccaaatgcagacacctacca<br>agctagcttagttaatatgcatgtggttaaataattgaaagtggatcaatcttaaatgtttaacatgtcctctgtcttaatcattt<font color="green"><u>AAAAATGCCAAATG<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCCGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAATGCCAAATG</u></font>caactagtagaaaaatggtttgattggcttcatcctccacacatttttcacagaagtgcaaatgacaggtaaaacaagcaac<br>agaagaggctgagagactaaacgagcaaccctggaattattatgagctggttattctgcaccccaaccatgccttcataggaaaagattaattttctctg<br>ggtttctgaagagtatgttagctctctagcactgagctaaatgaaacgggattgttttctctccaccgtcctaatgttcatgggtgttcaaatttgtagg<br>caaaaggcttgtacagacaaaacacctggagtataagacatgatcacgtggtcaggagcaaaatattgggcactgacgataaatacgaacagtaggcaaa<br>gatg	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:HSD17B7:NM:016371:1/9	
0	chr1	176664234	176664235	1001467	0	-	pAlu1-174978468;1104685261669; RIP_Alu_chr1_175_01	NA;NA	NA;NA	SINE	Alu	Yc1	agtaagtagtctatcatactttcttctccaaaggcaggcagactgcctgtaactggtttggctggggcaagtgtgtagttttgattagaattttgtaata<br>tcttaaactgggcctggtgccacagctcatgcctataatcccagcactttaggaggctaaggcaggaggattacttgagcccaggagttcaaggttacag<br>tgagctatgatggcaccactgcacgctagcctgagcaacagagcaagaccttgtctcttaaaaatatatatatattcaatatatatgtagaatatatata<br>tagagagaacatcaataagttctgaattaagatcttttatttaaagctatcacagatgaactctaaatggatcatagacttatatataa<font color="green"><u>AAGCTAAAATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGCTAAAATC</u></font>ataaaacttctaaaagaaaacataagtgaaaatctcttgggacataaaaaattcctctgcaaacattgcttatcaggatgtaaaatggc<br>acagcctctttggaaaagtttggtagtttcttacaaacctaaacatgtacataccatagaacccagcaattatactcttgggcatttaccccatagaagg<br>gaaaacacgttcacaaaaacctgtatctaactgttcacagcagctttattcatattaatgatagcaaaaactggaaacaacccaaacgtctttcaatggc<br>tgaatggttaaacaaaccgtagtacatccatacaatgaaatactactcagcaaccgaagaaacaaactactgatacatgtaacaatttggatggacctca<br>	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:RASAL2:NM:170692:5/18	
0	chr1	189847405	189847406	1001468	0	+	pAlu1-188047238;1104685258146; RIP_Alu_chr1_188_01	NA;NA	NA;NA	SINE	Alu	Ya5	gcagataggctagaggcatgttttgctgtacaaaagatgttttaagataaatatccagtaataatagtagttatcttctataattaatgtttaaatatgg<br>taataatattttcaccttatagaaataaaaatttttctattatttacaaactgtaaacaagtgacttctattttgaatatttactagttcatacattttg<br>tacttcttccttgtatttatataaaatttatagtgtcagatataatgaaaaatacaattgcaaattgttagagaaaagtatagcattttaaagattaaaa<br>attatatataaaatcatgtagaagttttataactctttgcttatgtaaaatttactggaatcattctaatattctctagaataaatt<font color="green"><u>TAAAATAAAAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAA<br>AATAAAATAAAA</font><font color="green"><u>TAAAATAAAAGTA</u></font>aaatttatgctaaataattaactatttaatgattaacgtaaaaatggatgaatggttaggttaggttacatatat<br>cagactcttctccagagtacagtagttcagtttgacttcaatttaccccattttgtgtgaagctcttttccagaatattttgataaagaagaacaagtga<br>aaattaaataaagcaaacaaacaggaatggaacacatatgtatataacatgtatgtctgtatgtatcattatatttatgtttctatgcatatatgcaaat<br>gtgtgtatgtacttgtgtgtgtgtgtgtataagtatttacttctccaaattcagtgagaaacactaatctatcaatactgaaaaactagtgaatctcaag<br>catgataaaaaa	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr1	206758116	206758117	1001469	0	-	pAlu1-205334897;1104685478513; RIP_Alu_chr1_205_01	NA;NA	NA;NA	SINE	Alu	Ya4	ttgagggtatgaaaatccaatctgtctggagtggtgtggggagtttatacactatggatctctttatataattgggagcaatgtggcctggatggctaga<br>gtgatgggtaagagcaccttccccaactcaggactggcagcaggaaagtaaaaaccctgatgagctttcatctttgtcccctctaaggcaaacaaaatgg<br>aaaactcatgccctgtgtatttcaaattctcaacctgatacatcaaccatagttatagatattagttatagcaataaccctgctggttccacagaattaa<br>gaaagtcagcagaaaacttctgcagttccttaagagaggcaaggtagaatttgccttagcagaaaaactaaatcagacttgcaaataa<font color="green"><u>AAGTAAAATCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGCGACCATCCCAGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGTAAAATCTG</u></font>taagaccacattttttaaaacatttgtttattcattcattcattcatttatttacccattgacatagtttggctgtgccccca<br>cccaaatctcatcttgacttttactcccataattcccacatgttgtaggagggacctggtgggagataatttgaatcatgggggtggtttcccacatact<br>gttcttgtggtagtgaataagtctcacaagatctgatggttttatcaggggtttccactttggcatcttcctcattttctcttgcagccaccatgtaaga<br>agtgcctttcacttcctgccatgattctaaggcctccccagccatgtggaactgtatgtccaattaaacctatttttcttcccagtctcaggtatgtctt<br>tatca	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr1	47314823	47315119	1001470	0	+	pAlu1-46743171; RIP_Alu_chr1_047_01	NA	NA	SINE	Alu	Y	ttcttctcacttttcttcatagttcatctaattaaagttttgtcaattttgttaatcttctcaaagaaataactttttgtttgttaatttttttctattg<br>tttttcctgcttttattttatttacctcagctctaatctttatcatttccttccttcagtagctttgggtttcatttgcccttctttttccagttcatta<br>aagtgtacagttaggttattgatttaaggaatttattttttaatgaagacatttaagctataaaaatctcattaagcactgcttttgctgaatcccataa<br>cattgggtaagttgttttcattttcatttgcctcaaaatattttctaatgtcttttatgatttattccttgtccctttggttgttt<font color="green"><u>AAGAATGTCTTGTT<br></u></font><font color="red">GGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGAGCGGTGGCGGGCTCCTGTAGTCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAGGCGGACCTTGCAGTGAGCCGAGATCGCGCCCCTGCACTCCAGCCTGGGCGACAGAGCCAGACGCTGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAGA<br>ATGTCTTGTT</u></font>taatattcatgttttgtgaattttcccgttttacttctgatattgatttctagttttattctatggagaggtatttttgtatgatttcaa<br>tctttttaaatttattgagactttttttgtgacttaccatatgatctatgctaaagaatgacccatgtgtacttgagaagaacatgtaatctgctgttgt<br>taggtggagcttttagaacatgtctgtttggcataattatagtgttgttcaagttctctatttccttattaattttttgtatcattgttctgtccattat<br>tgaaagggatgtagtgaattctccaattataattttagaactgtctatttctcccttcaatgctgtcagcttttgcctcatatactgtggggttct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CYP4Z1:NM:178134:2/12	
0	chr1	80071693	80071694	1001471	0	-	pAlu1-79690157;1104685761267; RIP_Alu_chr1_080_02	NA;NA	NA;NA	SINE	Alu	Yb9	gaaagtgaggtatagaaacagccagattggttacagcttggcgtttgccttatttgaacataatttgaacagttggccactttgattggcccaaactctg<br>tgatcagcacaagagtagctacagcctgcttacatgtccatttaggttatagttcatgatctacagagaaacctttaggtcaaacttaaaatatgtaaga<br>aggcagcttcagactaaacaatttaacagcttcaaagccataacttttggaattatattttctactagatagaaatctaaaaattaacatgcaacttcac<br>aatatctggcttctaatctattagataagcagcaaaaccaagcacaggtacattctcctagagaattaaacaatcattccatgtgcttataa<font color="green"><u>AACAATGC<br></u></font><font color="red">GGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAGAAAATTAGCCGGGCGC<br>GGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACT<br>GCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAACAAAAAAAAAAACAAAAAAAAAA</font><font color="green"><u>AACAATGC</u></font>atcagtatgaaa<br>tttaaagtatatgccattcctttttgcttatttctaagaattgtataattttttatgaaataaagaataacagtaaaaaagtagacaccccactattaag<br>aacaatggttgaaacagacattatttaataatgttttaggggaatgtgattcacttctggaaaaactataacagaactccagatggtggagatagaataa<br>cacgaaaaatattattaattgcagaaagaggcaaaattccttgaaatttatgcataaatcctgatactagaaaatattcattcatatactaacaggagta<br>tatatagaaagaataaaagttgctaaatgagaccaggacagtgattatcattagctacatggggctgagtattcctaggg	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr20	53195258	53195259	1001472	0	+	pAlu20-54400272;1104685525155; RIP_Alu_chr20_053_02	NA;NA	NA;NA	SINE	Alu	Ya5	acctttctcattgatcttcaactaggtttacttgcccccttatttgcctattttctgttcccaaatctgtcagttcaaggcaaaaccatgacctcaccct<br>aacaattgcattctgggcatgttagttgtataatcacattgccctgtcacgctggcatctttaatcattttaaaggtagtcttgacttggccatattctt<br>gtttaactactttaagcaaattaattagctttgtggggcccccaatgccattaattcatggtctataaaacctcagacctaattgaactttttaatattg<br>tgtctttactacctgatataagtgtcttttaaattattagaattcctacagttaatgccttattaaatagctacatatatatggaagtat<font color="green"><u>GAAAAATTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>GAAAAATTTC</u></font>caagattgcaaagtaatcaaaacccagattaaatcaaggatgattttatatctgttttattatatgtttaaaaattaccaaga<br>agtttgagtatgtaatgagaagtagtaggaatgcctcatatttctagctggcaaagaatacatgtggtgttaggtatctgagagtttatcagttaatttc<br>cattaactaaagtatatgaacaatgaaatactatcttaaagctacaataaaatgtcatttcaaaacttgtaagataactgaaatcaaagggacagataat<br>gacaagtgttggcaaagatgtggagaaattggtatcctaatacacagctggtgggaatgcaaagtggtatgtcactttggaaaacaatctggtagttctc<br>agccatt	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr21	31706107	31706108	1001473	0	-	pAlu21-31704668;1104685580334; RIP_Alu_chr21_031_02	NA;NA	NA;NA	SINE	Alu	Yb7	tctcatcatctaccctctttgcaccccgccatcctttcaagtcttcgttgtctatcgttccacactctacagccatgagtacacattatttagctccgac<br>ttagaagtgagcacttgcaatacttgtctttctgtgtctgacttaagataacggcgtccagttccatctaggttgctgcagaagacatgatttcattcat<br>ttgcacaactgaatactattccattgtgtatatatgtcacatttcctttatccagtcatctgttgatagacaccgaggtggattctgtatctttgctact<br>gtgaatcctgctgcaataaatataaaatgcaggtgtctttctgatataacgatttcttttcctttgggtagccgtcttgtttcttt<font color="green"><u>AAAAGAGCTGACGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCTCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>A<br>AAAGAGCTGACGA</u></font>aatgcactttctagtgctgtccgattgcccattacatacgttcttacacttgatacccagcagtcggcaaaccatagcccgcctgca<br>ggccagatcccgcctgtcatctgtttttgtaaataacatttattggggctgggcatggtagctcatgcctgtaatcccagccctttgggaggccaagacg<br>gatggatcacttgaggccaggagtttgagactagcctagccaacatggtgaaacctcatctctattaaaaatacaaaaattagctgggcatggtggcagg<br>cacctgtaatcccagctattgaggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagtgagccgagatggcgccattgcactcca	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:TIAM1:NM:003253:2/29	
0	chr21	43258980	43258981	1001474	0	+	pAlu21-43280486; RIP_Alu_chr21_043_01	NA	NA	SINE	Alu	Yb7	nnnnnnnnnnnnnnnnngtttcaactgttcattgacctcattgagaaattacatatttgggctgggcgcagtggctcatgcctgtaatccctacattttg<br>ggaggccaaggtaggaggatcccctgaacccaggagttcaagaccaacctgggcaacatgatgaaatcgtgtctctacaaaaaaatacaaaaattagctg<br>ggcatggtggcacacatctgcagtcccagctactcttgaggctaaggtgggagggtcacctgaatgcagggaggatgaggctgcagtgagcagagatcct<br>gccactgcactgcagtctgggcaacaaagtgagaccctgtctcaaaaaagaaaaaaaaatctaatttcaattaaaataaaattaaa<font color="green"><u>AAGAAGGCCAGTTT<br></u></font><font color="red">TGCCGGGCGCGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTTGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGACTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGTTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGGCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAAGGCCAGTTT</u></font>cgatggctcatgcctgtaatcccagcactttgggaagctgaggcaggtggattatttgaggtcaggagttcaagaccag<br>cctggtcaacatggtgaaaccccatctctacaaaaaatgcaaaaattagcccattggtagtggcatatgcctgtaatcccaggtactcgggaggctgagg<br>caggagaatcatttgagcctgggaggcagaggttgcagtgagctgagatnnnnnnnnnnnnnnnnnnnngtttcaactgttcattgacctcattgagaaa<br>ttacatatttgggctgggcgcagtggctcatgcctgtaatccctacattttgggaggccaaggtaggaggatcccctgaacccaggagttcaagaccaac<br>ctgggca	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	202339706	202339707	1001475	0	+	pAlu2-202595483;1104685654788; RIP_Alu_chr2_202_02	NA;NA	NA;NA	SINE	Alu	Ya5	cagaaatagttcattaagaacccctaggctgggcgtggtggctcatccctgtaatcccagaactttgggaggtcgaggcgggtggatcacctgaggtcag<br>gagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaataccaaaaaaattagctgggcatggtggtgagcacctgtaatcccagct<br>actcgggaggctgaggcaggaaaattgcttgaacctgggaggcagaggttgtggtgagctgagattgcaccattgcattccagcctgggcgacaagagca<br>aaactcagtttcaaaaaaaataaaataaaaaaaagcaaagacttggaaccaacctacatgtccaacaaggatagactggattaagaa<font color="green"><u>AATGTGGCACATA<br></u></font><font color="red">GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AATGTGGCACATA</u></font>tacaccatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaactggaaaccat<br>cgttctcagcaaactatcgcaaggagaaaaaaacaaacaccgcatgttctcactcataggtgggaattgaaaaatgagaacacatggacacagtaagggg<br>aacatcacacactggggcctgttgtggggtggagggagcggggagggatagcattaggagatatacctaatgctaaatgatgagttaatgggtgcagcat<br>accaacatggcacatgtatacataagtaacaaacctacacgttgtgcacatgtaccctaaaacttaaagcataataataataaaatttaaaaaaaaaaga<br>aagaaaa	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:ALS2:NM:020919:3/34	
0	chr2	64953551	64953552	1001476	0	-	pAlu2-65057746;1104685777294; RIP_Alu_chr2_065_02	NA;NA	NA;NA	SINE	Alu	Yb7	gcttttagtttgtttatgtgggttgtacctctcaatagttaccagtttgtagattaaaactgaaccggcctggccaacatggggaaaccccatctctact<br>aaaaattttaaaaattagccgccctgtggtcccagctactactcgggaggccgaggcaggaaaatggcttgaatctgggaggcagaggttgcacagagcc<br>aaaatcgcgccactgcactccagcctgggtgacagagcgagactctctgtctctcaaaacaaaactggccaggcgcggtggctcaagcctgtaatcccag<br>cactttgggaggccgaggcgggcagatcaggagtttgagaccaacctggccaatatggtgaaaacccgtctctactaaaaatataaa<font color="green"><u>AATTAGCCAGGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGGGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AATTAGCCAGGTG</u></font>tagtgtcgcatgcctgtagtcccagctacttgcgtggctgaggcagaagaatcacttgaacttgggaggcggaggttgcagt<br>gagccgggatcgggccactgcactccagcctgggcaacagagcaagactccgtctcaaaaataaataaataaaataaaataaaataaactgaagcagtca<br>cggtggcccatgcctacaatctcagctacttgggaggctgagacaggaggatgcttgagcccgggagttcgaggtcagcctgggtaacacagcacagacc<br>cctgtctcaaaaaaaaaaaaaaaagaaacgtttaaaaagtgtaaaataaaatagaaaccgacggccgggtgtggtggttcatgcctatcatcccagcact<br>ttggg	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr2	39168844	39168845	1001477	0	-	pAlu2-39273037;1104685771010; RIP_Alu_chr2_039_02	NA;NA	NA;NA	SINE	Alu	Ya4b	gacaaatactatatgatttcacttctgagatacctagaatagttcaattcatagagacagaaagtagaatggtaggttccagagcctgcagggaggagga<br>attggggagttattgtttaacaggtgcagagttccaggccgagatgatgaaaaagttctggagatggataatggtgatggttgcacaacaatgtcactga<br>attatgcatgtagaaatggttaaatggtaaattttgtgttgtgtgtattttaccacagttgaaaaaaaaagtcacttccttcgctccatctcaggcatac<br>taaagtagaatttctagtggtcgggcccagaatcctgcgtttaaaaaaaaagaaaaaagcttttcagtttattgttatgcatggttt<font color="green"><u>AAGAACCACTGAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAACCACTGAT</u></font>atgtgggattatctaatggaaagtggggtaaactggattttgttggtattatctttaaagagaaatttatccgattgatgaat<br>taaagtataatcttcatctagatttttatgtttaattcagctgttaatatttacacattacttcatgtggtaatgtgaataatgactactaataattatt<br>tagcattctaccacattttaaagcactttcggctgggtgcagtggcctgtgatcccagcactttgggaagccgaggcaggaggattacttgagcccagga<br>gttcaagaccagcctgggcaatgtggctaagccccatctctaaaaaaattttaaaaattagctgggcatggtggtacacacctgtagtcccagttacgct<br>agag	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:SOS1:NM:005633:1/23	
0	chr2	31805715	31805716	1001478	0	+	pAlu2-31909920;1104685768855; RIP_Alu_chr2_031_01	NA;NA	NA;NA	SINE	Alu	Ya5	aatatcttgcatttattcactgatgtttgagatttatttctctgctaatcatttgcttctgttaaaaacacccgactaagaaaacacccatgaaagatct<br>gcaatccttgacagttcaatgagaacaaatatgtgtttagtctgtctttctgatcaacattttgaaaagtttttcatgtgggaaaagagaaaagagtggt<br>aagacaaagggtatatgagggcatgacaccaaatatatataattagaaagatggagaaggcacaagaaagagacactagggcaaaagactaattttccct<br>gttttaaaggtggaagatgatacaaaaagacttatggtatgattccacttatatgaggtacttatagtagtcaaaaccatagagacaaa<font color="green"><u>AAGTAGAATGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGTAGAATGG</u></font>tgattgccaggggttaaggggagaatggaatggggagttagtgtttaatggaaatgctttcagttttgcaagatgaaag<br>agttctggtgatagatggtggtgatgactgcataacaatatggatgtatttaccaccatacgtatacaagctttaaaatggtgtagtcaattatatgttc<br>tcagaaccacaattaaaacatctctgtggcccctaatatgatgaaattggtcaccacattaaccaatattttcaactttgcaaagcacaccaagagacat<br>ttttctggtaatctattaaagcttaacactgattttcaatgaacaccattaaaatccagagctcatcagggtttcaatgattttctagtacaacatgtag<br>taagcattta	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr2	21650333	21650334	1001479	0	+	pAlu2-21754538;1104685452461; RIP_Alu_chr2_021_02	NA;NA	NA;NA	SINE	Alu	Yd8	actgcattataaacctgaattgaatgagaagtgactaaatgggaagaaatttacctgaaagcaacttgatatcagttttctgctactgagaagaatggaa<br>gcttaatgatagaaattatatttgactatagaaaaataagttacatttttgcatgtatcagtttgtggttacatttgaatccattatatagtcccagcaa<br>tttttcttttatggtttcaatttctgatgattttcttttttaatctactagcacttatttgtatgttctacctttgtttctggaaccattcgtcattcaa<br>ctatttcatcaatagtttttaaaacaatgtgggaaacagtgcaggaaagtcaagaggcagagaagcacttactcactgtagtt<font color="green"><u>AAAAGAATAGCATTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG<br>CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAAGAATAGCATTCCT</u></font>ttc<br>cttagtcctttctttctgtctttgcttgctgaaatatcctcccctttcaacctaatcaaattgtattgagtaagacttcatttagattttaccacttcaa<br>ttccaatttcctggctactcaagcccacgatgtgatcccttcctctaaactcttaaagtatgtgcagtctctaccttcaagttaagaactgaattataat<br>agcccatctttgttgtctgctgttttcttcaaaataatttcttttctaattttgtcagttagactctccaattcaagtgagctccctaagatcttctttg<br>aacacaaggtcttacatttagattcaaagtaacattttgatttagaattaaagttgagtgggtttacataacctgggtgg	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr2	642673	642674	1001480	0	+	pAlu2-642672;1104685353303; RIP_Alu_chr2_000_01	NA;NA	NA;NA	SINE	Alu	Ya5	ctgggccatacctgggcctgtggggccacctatgagtgcttcccttcacttcacccagaccgcagtgcaggaattgccaagaatccgtgagcggccgtgg<br>tatccgtcagagcatgggctgctcctgtcctcaggagtctcttggcagatccagggcctttgcactcagggtcactttcaggtcacactgggctgggctt<br>gactctgcagaccaatctggaaaccccttatgtgtgacatcagcttttcttacctgtcaatatggcatatgtttccattaagccatctttacatctttta<br>aaaaaattttgtaattttattcataaaaatcttgtacatattttagattagtttcttggaaacttacaattttggttgatattgtaaaag<font color="green"><u>ACATCTTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGACGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAGC</font><font color="green"><u>ACATCTTTTA</u></font>taaaatgcatttctagctgtctattttgttataaaaacaaattgatgtacattgatctttatatcgagtgatc<br>tcccccaactctcttgttagtatttatcatctatctatatcttattttggggtttctctgtagaaaatatcatctacgattaagaacacatttttttctt<br>ctttctttcaaattcttacaacttttgtttgttttgtttatcttactctaggatagtgtttttattttcataagatttcttcttttcttctgagaatgtc<br>cttattcaacctttattctcaagagttgaattgatggacatggtttctgagcagctggaggcttcctgtctctgttgctggtgagaatttgcctttcacc<br>tagtcgctgttcctttg	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr2	84582267	84582268	1001481	0	+	pAlu2-84686466;1104685781634; RIP_Alu_chr2_084_02	NA;NA	NA;NA	SINE	Alu	Yg6	gaagggatgttgaattttatcaaatgctttttcagcatcaattgaaatgatcatatggttgtgtcctttcttctgttgatatggtgtatcacattgattc<br>atttgcatatgttgggtcatccgtacatcccaaggataagtcccacttggttgtaatgaatgatctttctaatgtattgttgaatttagtttgctagtat<br>tttactgaggatttcttacatcaaaatttatcagcaatattagcctgtagttttctttttttaaaatgggtctttctctggttttggtatcagtgtaata<br>ctggccttgcagaatgggtttggaagtattccgtcctttcctagtttttggaatagtttgagtaggattgggattagttcttctttaa<font color="green"><u>AAGTTTGGTAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGTTTGGTAAAG</u></font>gttcagcagtgaagccttcaggtcctgggtttttctttactgggagacttcttattatgactttgatctcattacttgttattg<br>gtctgttcaggttttggatttctttctggttcaatcttggtaggttgtaagtgtctagaaatttgttcatttttctacattttccaatttattggcatgt<br>aattggtcatagcagccactaatgatcctttgaatttctgcagtatcagttgtaatgtcacctttttttatttctgatcttacttattgggatcttctct<br>cttttttcttcattactctggctaaaatttgtcacttttgtttaacttttcaaaaaaccaactttttgtttcattggtcttttctattgtcttcttcgtt<br>acaa	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr2	65187307	65187308	1001482	0	+	pAlu2-65291512;1104685777384; RIP_Alu_chr2_065_03	NA;NA	NA;NA	SINE	Alu	Yd2	cgtttttgtagaagatatacatgattttgtattttgtcctttttgatttactttcaaaaatatgctaaagtgaaaaccacgtcacaatttagattaaaat<br>tatttacatgtaaacaagacataaaacttattttttttgttttaattgcactgccaaagaagagaggatataaaacttctataagcgattatctttgtga<br>atattcaactattacgtaggtttacataatgatatgcattacttaaaacattgtttgggttttagcaaattaccatattatacttattgttatacttatt<br>gtctttaattatatatgaggaaaataattttttaaaaatcccaagtgccagtcagcagcaaaatagaagtcagagaaggaaacaaa<font color="green"><u>AATCTTCTAAACAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAAGGTGAAACCCCGTC<br>TCTACTAAAAATACGAAAAGTTAGCCGGGCGTAGTGGCGGGCGCCTGTTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAG<br>GCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATCTT<br>CTAAACAAG</u></font>gtaaatcagaagaggggactgaagcatagaatgaactagacatcctttccagtttgagattttaaaatttttaaaaagatcgctattgtag<br>aatattatccttaataaatgattgatacctaataccaacaatttgtacttggcagttcagctggctgactttactactattgataaggttccttcttaat<br>taaaccaaatattcttctttctttttttgagacagagtcttgctctgttgctcaagctaatttttgtacttttagtagagacgggatttagccatgttgg<br>tcgggctggtctccaactcctgatctcaagtgatccacccgccttggcctcccaaagtgctgggactacaggtgtgagccaccatgcctggcccc	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:RAB1A:NM:004161:1/6	
0	chr2	63632740	63632741	1001483	0	-	pAlu2-63736931;1104685776976; RIP_Alu_chr2_063_01	NA;NA	NA;NA	SINE	Alu	Yb7	acagtgtctagctattttttaagttgaattacttctttattactttttaaaatgcagatatcttttaaacacttgttacttagtatgagaataaatcttt<br>aaaaattggcattttattactgctttctggaatctttaaaattaaataatttttatgcattagagtaggtgtatatatatctctgggaataactggaata<br>aacaacataaaagagaaagaatagagaaaatttattttttataagtcttcattctgctcagtttaacagtgcccaaatacagagtaaatattgatactag<br>tgaaataacttttcacaactttttttgggtactataatagaatacttggattttaaatagaatatagaatataaaatattgtttta<font color="green"><u>AAGAAAGCAGGGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGCAGGGCC</u></font>aagtgtggtggctcacacctgaaaatccagaaccttaggaagctgaggtaggaagatcacttgagccc<br>aggagttgagaccagcctgggcaacatagtgagaccctctctcttaaaaaaaaaaaaaaagaaaatgaaagcaaaacagaatattcatatttaggtttat<br>actaggataagaagatttaagaaggaaagactgtgatggggataggttagaaaaggacaatgacaaatctggcacattataaaaaaatcacccttttcaa<br>atgggtgccttttatgtaacaaataattcacatacgtgtctttggttttagaaaacaaaagcattatgccagcattttgcttttaacatattttgagtct<br>tatttgccttaatattat	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:C2orf86:NM:015910:1/18	
0	chr2	11343827	11343828	1001484	0	-	pAlu2-11431276;1104685092216; RIP_Alu_chr2_011_01	NA;NA	NA;NA	SINE	Alu	Ya5	aaaattgtgaaaaaaatcagaggtctacagatgaaggcagaagactatgatgttgtaaaagttattggaagaggtgcttttggtgaagtgcagttggtaa<br>gaaagtgttttgttcttattgttctctatgacatcatggttttgtgaagcattatcaatagcagctgagtagatctaatttctatgcccacccatgccag<br>aaggtggctttgtgatcttggtcagtgtcctcatctataaaaggaagcctttgttgtctactctgggtctcttccagctctgaaacacattgtagaaaat<br>aaggccaatatagcttcacatgtgatctgcctagcagttactattccaccagaactgttgtatttttatttagaatgttcagatt<font color="green"><u>AAAAACATCTGCTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAAACATCTGCTTA</u></font>aggaactgagatttatttagatgtataagaaacctaacagataaattttaataactgaaattaaatctgaa<br>atttattttcgcaggccatactggtaccaattggaattataagaaatgttgacaataactattacctttatattattggctttggaactcttcctaatct<br>cgtattcctgttttcatcacctgagtatatgaaactcctctattattgtccttatagttaaattagagtcaaattctcttcttcacactacagcgtttac<br>ccctcttgatggagcactaagaaaagtagtgatcattataagccagcatggattttgttaagaacaagtcatgatagacttttttttcctttcattgctt<br>ctttctttgggttt	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:ROCK2:NM:004850:3/33	
0	chr2	181970446	181970447	1001485	0	+	pAlu2-182226223;1104685649812; RIP_Alu_chr2_182_03	NA;NA	NA;NA	SINE	Alu	Yc1	tacattgagcgtataacttgatataaacaacaacaaatattattttgtctgacaaagtctaggttctcaggctgaaacagggagcaaggcacacagatga<br>ctcttttcatggggagtacattatggcggggaagacctagaagcaataaataaacaaacaattaagaaaaaaatattccagaaagacatgatatggaaat<br>aagagttggctgggcaactactttcctggaagatcttttacaagtctactctctgaggaagctagaagagcataattctcatcaagaggtagcaaatccc<br>tatcatgcctccttttgcctgctggaactttagagggagaaagaggaacaggcatgactgaagacaataagtaaaagagccaac<font color="green"><u>AAGAAGGAATACAGAG<br></u></font><font color="red">TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGG<br>CGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAG<br>GAATACAGAG</u></font>ccaaacgtggccagatgaacatgtgcccacgggaatatgtgggcatactgagtggccagcgccaccacagaggctctaagcctatcaagc<br>taaagtcacgtacctcaagccctcttctttacagatggcatctaaagaatgacaagactcacccaattcatatttagagattttgaaccagagctggaag<br>ttagacttcctggtgtatttcatttacatatctaccaagaattgccttcatctgagttacttgcaatgtgggcactaataaatatgattactgagcaaga<br>atcaaggaatgataccatggggtttacagtacccacaaaattagatatccactaaatgtactatgtggcagataatagatcagtgtgtcagtac	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr2	178026976	178026977	1001486	0	-	pAlu2-178282738;1104685648842; RIP_Alu_chr2_178_01	NA;NA	NA;NA	SINE	Alu	Yb7	ctggagatgaaaaatataatgtctgagattaaaaatatatttaatgggattaagagcagaaaagacatagcaaaataaaacagtagtgaacttcaagaca<br>tagcaacaggaactaaaagaaaaaaatgagaagagtagcagtgagctgtggaacttcaaagagcctaataagtgagtaaatagagtccctaaaggtcagc<br>ggggaggggggtttattggatagttgaagaaataatggacaaagtttttcaaaatttgatgaaaactataaagccacaaatcaaaaaagcttaacgaatc<br>ctcaacaaaagaaacacagagaaaaactacaccaaggtccatgacaatcaaattgctcaaaccagtgataacaagaaaatcttaa<font color="green"><u>AAGTAGCCAGAGGGG<br></u></font><font color="red">CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTAGCCAGAGGGG</u></font>gctgggcacagtggctcacgcctataatcccagcactttgggaggccgaggtgggcggat<br>cacctgagatcgggagttcgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccgggcatggtggctcaagcttgta<br>atcccagctacttgggaggctgaggtaggagaatcacttgaacccgggaggcagaggttgtggtgaaccactgcactccagcctgctgagcgacagagta<br>agactctgtctccaaaaaaaaaaaaaaaaaaaaaaattactactgattttcttagacatgataatggtattatagttatgaagaagaacactattcttct<br>gtctttaggagatggtgctgatgta	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:AGPS:NM:003659:8/20	
0	chr2	178059713	178059714	1001487	0	-	pAlu2-178315479;1104685648848; RIP_Alu_chr2_178_02	NA;NA	NA;NA	SINE	Alu	Yb7	gacatcgttatttccaaactaacaattttatttatctcttttagagaataataacacgttatatctaacactgatatgctgattaaaaaacattattttc<br>ctcctcttcataggctacagcaggaaatgtattttctgagaacgtcttaaaaatcatttacccatctactgaataaaggaggagattatactggactgcc<br>acttatgagaaagaatcacattaatcttccactaaatcctcctttctagtttctcacaaggcagtgaagtattgaaagaggatacttcctcacatggaca<br>aagatcggatgagagactttagtagaatccttctaatgctagtataaggttgcttaatttatttccttcagtaagaatagtaataaaa<font color="green"><u>ATATACATATAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGAGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAATATATAT</font><font color="green"><u>ATATACATATAG</u></font>cccactttgctatttgtgaacagtcatgtatgttctttcccaaaagatatttatcca<br>aaattacagtttcccatttcaaaagcaacttgaatctgaaaatattgcaaagatggaagtgctataaaatgacagtgaagaattacaagcaaccaattca<br>ttattcaatcaagaatttggcacaatcataagccatgtaccatctactttaatggatcttaattcccctgctatcaactgaaattccaaatcccaaattg<br>aacaatgactagttccaaaacctgattttttcaatttttctgcctgaaaacactattacaaaggaaggcagcaaatactgtaccactcttgacatatgag<br>acttgtatgttctacaaactaatatacaact	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:AGPS:NM:003659:11/20	
0	chr2	154460862	154460863	1001488	0	-	pAlu2-154716616; RIP_Alu_chr2_154_01	NA	NA	SINE	Alu	Ya5	tatgtatatacaatttacatcttcatatatatttaatatttatatattcagattaaatgaaagatatatttattcataatttacatattgatatatacct<br>attaaatatataaaatacaggagaatgagaacaaatgtaaaaccaactttagagttttaaaataaatcacacaaacaacattatattatagtcagaaaat<br>taagcaatgtaaagttaaataataaaatggtaatcaaaaaataagtgaaagtagtcaggacttaaagaaaaaagacaaaaggttatcagtctttaaagat<br>tagcaatataagtggtttttccttatacaattagttttctaaatcgaaagtggcaagttttttttaatttaggaaaaaacat<font color="green"><u>AAAAATATAAAATCATCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>TAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAATATA</u></font>atatataaaatcatccttaattccagaaacaactatcctgttcttactcgcagactattatttaaataattatatcatacaaactatttta<br>tgattatattctctttttacttaattgtgaatttcttgtgtgacaatatctttttttatcattacactgcaagatcactgattaatatcctgttgctatg<br>gcatgccatcatttacttattttctgaatataaattatcatcaaatatttgtggcaaaaagaagttactgtgaaggtccttgtgcatatatcttctgcca<br>cagcgtgattgtttccttaggataaaatgcccagaactgggatttctgggtcaagtagcatgagactgttaaaacttgttaaaccatattt	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GALNT13:NM:052917:1/13	
0	chr3	4180146	4180147	1001489	0	+	pAlu3-4197006; RIP_Alu_chr3_004_01	NA	NA	SINE	Alu	Ya5	atcaaaaatgtacaaatgtctgatgtaaagtcattgggtgttgaactaagcagcagcctgaaaaaaaaaatcactgtctactgctacacctaggaaatgt<br>agcctccactcttctcccggtagactgctagggtttccgggtcactgcactttgcctattgaagagaagagaaacaaaaacactccaacaaccaattatc<br>tctccttgtttttattgtaccaaagcagacttaatctccttgcccctttttaaccttccttttcatgcagatgagagagagagagagacagagagagaga<br>gaaaggaaggaaggaaggaagggagggagggagggagggagggagggagggagggaggatgggaatttataaagactttataaagatgt<font color="green"><u>AAGAAAATCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAAAATCTC</u></font>tccaatgtatctctcaaagacctattacaggatctttcttctatctctttgttgatattctggttttcttgtactgacatcca<br>ggatactgtccttggacccactttctcagacatttctgtaaaggaacagtcttccagctcctttgtatgagaggaaattgaagcctatgaaaggtaagtg<br>ccatgctcaaggtctagagtgagtggggcagagttaaaacaacatctgggtttcctaactgccactccctgttctttcaattttaccagtccacatcata<br>aagggagatcaagatgtattgttaggtttgaacctgtttcttaatttccaacatcagtcttctaatagacagccatcatcttatatttttctatgaatta<br>ccttgg	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	31856403	31856404	1001490	0	+	pAlu3-31728001;1104685213628; RIP_Alu_chr3_031_02	NA;NA	NA;NA	SINE	Alu	Yb7	gatagaaaaaaagaaaaaaaacttgaggaggctttccaattttaggtaggtggccagagaacgcttcatgagaaggtaacatttgattaaagatgtcaac<br>gaagtaaaggagtgagccaggctatctgggtaagagcattctacatagaatctcaacagagcacaaaggccctggggtgagagttcacttggtgtgtttg<br>agcaagatggacagtgtggcagaggtggaagtgagcaaagcatagagcaatatggagttgaggtcaacaggttagggatgggagagactagttcctgaat<br>tagaaattacagacaacagccaggcaagccagatgcctggtaccacctaaggctcatgcagacacagagaatgacaagcaaatt<font color="green"><u>AGAAGAATGGGTTTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AGAAGAATGGGTTTCA</u></font>ataagctttctcctcagggtcatagtcaggtattaaattgttatttgcatacaatttacttaggtctacatg<br>gaatggatcatttcaactggataattttcatcataaaattatattactactgccctgaagatgggcttttcatgatttattctatgctctatttcttctc<br>acgtctcattgtaatcgacccagaagatactttatgccagtaatgaatcatagaacaaaaggcgagtgcgtgctgaggaattctataaatgatcactctg<br>gaacatggggacaagggctcctattttatatttaaacatctgtctcctaccagtgggtcaaaccagccatgggatgggaagtccaatgtcattctgagaa<br>catttcaagaag	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:OSBPL10:NM:017784:4/13	
0	chr3	48347331	48347332	1001491	0	+	pAlu3-48191559;1104685209522; RIP_Alu_chr3_048_01	NA;NA	NA;NA	SINE	Alu	Yb7	tgaacccaagaggcagaggttgcagtaagccgagatcgcgccactgcactctagcttgggagacagagcaaaactgtctttttgtttttcagttgcaaga<br>tttaatagagtggaaacagagctcccatatgatgggaagagacccaaagggggttgccactccctgcttgaatgcctgggtttatatcccgatcattgtc<br>cctcccctgtgttctcaggcgatatatgatttgactatttctttacctcctgcttttagcctattttgtattttagtgagccctctttactacctgattg<br>gtcgggcttgagctgagttacaagcccctgtttaaacgtgggtgcgttcaccttccctagctaggcttacaaattcttagtcagcct<font color="green"><u>AAGAAATCCAGCT<br></u></font><font color="red">CAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAATAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAGAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATCCAGCT</u></font>agtcctgtctctcagtccccgctctcaacaggaaaacccaagtgctgttggggggattggctgacaactgctc<br>taactgcttcctgctcaactggggcatagtaggggtcgtgcagttgagatttcctagggaggggtgccttcgatgtcatcaatatcacagcatgggctag<br>caggccggtccaaggatccctggtagatcttagtcagggactgcatctggggctccatttgaagaacatttgtagttttacagctttgattctggaagag<br>acaaacttaacaaggaggttaaagatacagggattgaaatgtatggtctgaagttcaggggcatatgggtgtggggctgaaagtggggtttcctttagaa<br>aaactcctataaga	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr3	19010457	19010458	1001492	0	+	pAlu3-18886026;1104685216610; RIP_Alu_chr3_019_01	NA;NA	NA;NA	SINE	Alu	Yb7	tattatctcatttaattaacaccacaactgtatgaagtaggtacttttatgcttgagaagactgaggtccgtagaaattaaggtatttgtcttgatgtca<br>ccagaccagcatatgaaggggtcaagatataatctaggcagtctaactccagatttctccctatgaactcttgttaaggtggcatcaagaagcaacacac<br>tgttgaatttactctactaatccacaataaatcaacttctgtcagtctctaatatgaaatcaaatgataaatgaatatgtgtcacattggaagtaaagat<br>tatccagtgatcaatccaactcttaccattgacaagagggaggcccaaagcagatgagttcaaatgtgttagtgcttagtaagcttaaaaccaag<font color="green"><u>GTCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCNNNNNNNNNNNNNNNNN<br>NNNN</font><font color="green"><u>GTCAT</u></font>tgtaatatatgcaaatgtagtgagtatcccaaactgcacatcacatagcaaacactcaaaaaatgatgtgtgtgcatcttccagggaaatt<br>tgatacagcgaccaaaaaggaagatttggaagagatgttggggcctgatcatttggtgatgaaaagcaaatgaaaaatactgcctggaggccaggttcag<br>tggcttatgcctgtaattccagcactttggaaggccaaagtgggtggatcacctgagcttaggagttcaagactagcctgggcaacatggtgaaaccccg<br>tctctactaaaaatgcaaaaaattagccaggtgtgatggagtgcacctgtggtcccagctacttgagaggctaagatgggaggattgcttgagcctggaa<br>ggtg	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr3	87603172	87603173	1001493	0	+	pAlu3-87400471;1104685028053; RIP_Alu_chr3_087_01	NA;NA	NA;NA	SINE	Alu	Ya5a2	caaaataacttggaagaataaaatgtggcataaaatcttaacatagctgagagttttaagttattctgtagaggagggtgaggaaaaaaaacagttttgg<br>aaaattaccataaaacattgaaagtaaaataaggaatgtttttgatatagcttcaaggaataatcacatgtttttacttacagtaagatttcataaattc<br>ttatttcattacaatactgtattttattaaaaaaactgaacaccacacaaatatctgtaacttaaaaaatattcgttgttacccgagctttagtactata<br>atatttagcaaaaaaaaaaaaatgactatagctgatgactttatgtcattagctacccctgaagttgctgaaaaaatgaagtgtt<font color="green"><u>AAGAGATAAAGTTGG<br></u></font><font color="red">TTGGGAAGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCT<br>GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGATAAAGTTGG</u></font>aatttggtagaagactcca<br>ggaataaaggtattttttttgtggcggggaggggatatctgtcagatctctatagtgcagagaattttacagaggtgacctgacactcttttccatcaaa<br>gcaatgagtggcaaactctctcagctggatatctggactttgtgagtctttatcttcaccaatataaaatctatcatgtagtcaaattatgatattattt<br>taatattttagtgccagaagactgatgcatatttacaaactaagtcagctggctgaattacacaacagaattttataattttaaaagaaagaaaggaaaa<br>ggcactataggcaataaaacactatgaagttgtggtcaaaataattaagtcacttgtactgtgttc	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr3	77068574	77068575	1001494	0	+	pAlu3-76791503; RIP_Alu_chr3_077_01	NA	NA	SINE	Alu	Yc1	ttagaaaaacaatgcatgcatcttaaaataaagaaaagccaataaaannnnnnnnnnnnnnnnnnnnatgttaattccaagtgaaattgaaaataatttt<br>aaatgtgtaaagattttgtatgcagcaacttcaaggcagtaaatgaaaatgtaagggtggacagcgttgctcctccaagtcacggaaggtgtgacctgaa<br>ggatttatgaggtattaaaagcaaggactgataaattaattatttgtgggagccaacacattacaattaccactaacatgttaaccttagtagggtttct<br>ttataaatacacatgtctactatatataaatgtttccagatatgtaattgggatcattcttataacactgattgagaaactggttct<font color="green"><u>AAGAATTCATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCTGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAGAAAAGA<br>AAAAAAA</font><font color="green"><u>AAGAATTCATTTT</u></font>attcacaacagcagtggatatttttagactacagagtaattgcattttgagtctttaactcaattttactttattacatt<br>ctgcctttaaccttagttcctttttttaattgaaacacctagttaaatatatacattcttatgaagacatttgtttctgaactggttgttggaaacatta<br>ttcctagaaaattacttaggatgtcacagagtattaaaatgaagactagcgtctaaattaactagcacattttatgtagtgttcattgattctacaaact<br>ggtactcattattgacctacctacccctccttatcctcaacctactcacattaattgagtctccattttcttgcttgtacttagtaaacaccacaagtga<br>aggtggg	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	170957016	170957017	1001495	0	+	pAlu3-170876349;1104685600305; RIP_Alu_chr3_170_01	NA;NA	NA;NA	SINE	Alu	Yb7	ccaaataatgacctaaattttaattttgtaactgaaaaacattagaaagcactattaattacagatatctacttagcatttgcctctgtgctggtgaaat<br>catagttacaattagctggtctgttctctgccccaacagcactccatcatgcattcaacaaacaattattgagcacctgttatgtactaggcacctggga<br>tctgtcaatgaactcaatgacttgggttctgcccctatccttataacccagtgaagaacacagataagcaaataatttattgcaaattaggaaaacatgt<br>tataaaggtaatcaacagaagatcataagaggaggggtaacctgcttcaaaagggggtcagagaggattctgaggaggtgatatctaagtt<font color="green"><u>AAGACTTGA<br></u></font><font color="red">GGCCGGGCGCGTTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAGAA<br>AAAAAA</font><font color="green"><u>AAGACTTGAG</u></font>ggaggagagaaggggccaggaactacaagtgcaatttaagcagagaacccaggatgagagtttggtacaaaggaggctggtgtg<br>gctgaagcacagtgcaagaaaagaagagggtgtattagtttgttttcacactgctggtaaagacatacccgagactgggaagaaaaagggattttattgg<br>acttacagttccacctggctgtggatgactcagaatcatggtgggaggcaaaagtcacttcttacatggcggcagcaagagaaaatgagagaagaagcaa<br>aagtggaaacccctgataaacccatcagatctcgtgagacttattcactatcacgagaatagcatgggaaagactggcccacatgattcaattacctccc<br>cctgggt	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr3	142801299	142801300	1001496	0	-	pAlu3-142600205;1104685606879; RIP_Alu_chr3_142_01	NA;NA	NA;NA	SINE	Alu	Yb7	tgtttttagtcttttcacactgcagctttgggaaaacttcattccctgatttgtgtttgtcttggccttcctggtgtgcagttactgctgtagaaaaata<br>ttaatagcttcatttcatataaacgtaagtaacttccacacacttatgtagaggactaaaaatgtatctggtatttaagtaatctgaaacagttctgcaa<br>gtgactgtgttttgtattactgtgaagatataaaaatgtagttaattacaatttaaagagtgttctacataacttaatttctacattccctcccttactc<br>ttcgagggtttcctttcaataagcaatttttccatgctcttaatgtattcctttttagtaggaatccagaagtattagactgaat<font color="green"><u>GAAAACGCACTTGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAACGCACTTGCC</u></font>atctctggctatggttcacaaattgaaatgcctcctttatcacataaggaggtcat<br>gtatatctgtggcaacagggagtttccttattcactctttatttgctgctgtttaagttgacaacctcccttcccaataaaaattcacttatacctcctg<br>tctttgtagttctggtattcactttactatgtaatagaagtagcatgttgctgccagaatacaacattgcttttggcaaattaaagtgcatgtcattttt<br>taatacactagaaaggggaaacaaattaaagtacacaagtctaaatttaaaacttttgtacttttctatgcagatctgtgcacgtgagagggtgtcctgt<br>ttgtctagtgattgttagagttggaacac	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:RASA2:NM:006506:19/24	
0	chr3	125889213	125889214	1001497	0	-	pAlu3-125688109; RIP_Alu_chr3_125_01	NA	NA	SINE	Alu	Ya5	ggattacaggtatgagccaccacacacagcctcctctgctcatttctaaatgagcataagacaagctgtaattttaaaaaatgtaaatgcaacataatcc<br>caagcagcgatagacttgtctctttcaactagttccttactcccaagtattttcgttatcatttagttctaagtgtttttcttcaactatgatttttttc<br>ttttacccagttgtaatgagtatgtttttacatttccaaagatgtgagatttttaaaaaggatatttttgttgatgatttctaacttaattgcattgtgc<br>ttggaggacttggtctgtatgatactgattccttgttttttgttgaggtttgctttgtaagtagcacacatggtcaatttttgt<font color="green"><u>AAAAAAATTCCATATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAAAATTCCATATGG</u></font>gttttccaaaaaatgtataatcattaatttgggggtacaggtctctatatgtgtccatgtgtcaagtacattgattgttt<br>tatggatatttctagtccaaatatccccctttacccctcaatattttggttagagaacatttagtgtgctgtcaaaaataaaaaggatgaaaatatggct<br>tttaacagaataatgaaagcatctatcacccatctcacaagatagttggttgcaaaggaccaaaatgggggtgcgttgctgtgtatgcactggtctccag<br>ctgctcctggcagcctaggagtcagttaggaagggactggaggtggggggccgaggaggatgcagtggtggagttacagcttcttctttataaatcacat<br>ttcc	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:KALRN:NM:007064:18/27	
0	chr3	121908165	121908166	1001498	0	-	pAlu3-121706690;1104685103313; RIP_Alu_chr3_121_01	NA;NA	NA;NA	SINE	Alu	Yb7	aggtgatatcctaaattctagtgggcatcaaagtttttcctcttttgtctatatcttgctgtaataattaattccctgattttcctttctatctaggatt<br>ttaattgattctcttcagttgtattttattgtatttctgggcctcgttacattttgttatttttctcaatctatcaaaatccgtgcatgtactttctact<br>atccatacttctttactatttaatgtctcacccactctcttatagtggcatatttcttttgctctaataactaaatctcttacaggtaggaagcttacat<br>aactaatcattattcaaagaactagaaaattagacatttgaatagattagtctcagatgatctacaggacactattttgtcagcta<font color="green"><u>AAGAATAGCAATTG<br></u></font><font color="red">GGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGC<br>GCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCA<br>GTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAGCAATTG</u></font>tatcaaatcagtactattttagtagatt<br>ttcattacctaatattacttttagtgagtataagtaatatatgtatgtactggtatctatggcagtactgtgtacagtgaagaaacaacataactttttg<br>agtgaataatttcatatgtacttgaagtagttttgattctcttgattaataaagtggttctacaggtaggaacaggcatggagtaggcactcaggaagtg<br>ttgaatgaagtaaagatctgctaaaagtttaatgggatttcgtcagcccttgtaaaataaagagttataaaactgacagagaaaggtttatggctattta<br>taaatatttgtagagaaaattttaaaataattgtctctgagttgttagtcatactaga	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:RABL3:NM:173825:3/8	
0	chr3	112470169	112470170	1001499	0	+	pAlu3-112268707; RIP_Alu_chr3_112_01	NA	NA	SINE	Alu	Yc1	agtgttttagtaccatccgcttggtattgccctcatgatagtgagtgagttctcatgagatctggttgtttaaaagtgtgtggcacttcccctgtctcgc<br>ttgctcctgctgccaccatgtgaaactcctgcatcccccttcgccttatgccatgattgtaagctttctgaggccacaccaggagcagatgccaccatta<br>tacttcctgtactgcttgtagaaccttgagccgattaaacctcttttcttataaattacccagtctcagatatttctttatagcaatgcaagaatggccc<br>aataaaatcagcaaatatgatgtaagcagagacttaataagcacttatgtattgaagtgtgtcctcttcaaaggcagctgcctcaatgt<font color="green"><u>AAGAAATGTGG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCTTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATGTGG</u></font>aaaagtcatgtggaagagaaccaatgtgccccagttggcagatctagttatgtaagccatcttggaccatccacc<br>tagtcatgctgccatgagtgatcttaggtaagatgggctgaagaactgatcagtccagccaaaactggagaattatgagccaacaaatttttgttttaag<br>tcactaaatttcagaatagtttgttaagcaccaacaaataactgactcacaggtatgaaaactcattgagaacagggcttatgtcccatatgtttagatt<br>aataacctcctggctatttcagttactctgcagaaatgaaggcagagctacagttacctggcaaagatgggaccacttaacacaaagtcaggcattgtct<br>atgagggagggata	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	111753720	111753721	1001500	0	+	pAlu3-111552258; RIP_Alu_chr3_111_02	NA	NA	SINE	Alu	Ya5	tttaaagcctagttggggatccacaatagacaaaataattaacgaatacaaacaaatgcattaaaaggtacttaataaaatgtccttggaagtaggtggc<br>aatgccttaatagttgtcaggcccaagggccccttccattcttgtcaaggggagtgctagccttctctccttgcatagcacacaaaaaaatgtccttggg<br>aagagataattctcaccaagaaaagagagagtattttctatatttgaggaatatccaatactattaaattctttataactaagtcaaattggaaaacatg<br>tagttattggcaggaagaaatgcttaaggatagagtcatttgatgactcttgaaagaaacagaatggcaaaggaaaaaaaggacctatt<font color="green"><u>AAAATTATTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTATTTA</u></font>aatttccaaaattcaatgacaatacaaatgtttagacaagttacacctgtgcttgattttaggttca<br>tattttatatgtcaaacaggtgtaataatgtcttgttaaatgtagcaaagttaataataaattgcgttcactgtgaacaaataaataggcagtgacttta<br>ataactactataaaaatagcttaggaagtagtgggttggaaaaaaaattataagttaatacagtattagagtaacattaacagaatctttcagagtgtga<br>gaaaatgtgttcacaggtggttatcagtggttaagctaatcaagaaagaaactcagtagaacttttagtccaaggacattcccttatcaagatttttatt<br>taggagctctcacataagtcat	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	101893249	101893250	1001501	0	-	pAlu3-101691772; RIP_Alu_chr3_101_01	NA	NA	SINE	Alu	Yg6	aaagactttcctcctcaatgacattttaccatagccagaaacagccaacatgacaccagcttcacactgtagttaccgttcttagcaacttaatgggata<br>gtcatcaaaattgcagtttcttcatgaaatacagaatagctcatcctgatattgaacaaagatgttatctactgtgaaagatatgcacaagcaagttcct<br>tgcactcagagtactgatgttctagttgaggagatgagaagagtatgcataaaaagttaattttatagggtaaaaagaagagaggacaaaaacatttaca<br>aaacaatatttttatttgataatgagtcatatttattcacttagttgatagttaataaggctagaatgaaagtcatcaccacaa<font color="green"><u>AAGAATAAAGCCCATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAAAAATACAAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAG<br>AATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAATAAAGCCCATC</u></font>aataaataaactatgtagattgtatcaatgtcattttgataatgtattaaagtaacataagatatgatcatg<br>ggaacagttgagtaaagtgtacatgggaattctccatactatttgcaacatcttatggatctaaaattgtttcaaaataatttatgtttaaaaagggatg<br>acataagaatggggaagggtggagccaagatggccgaataggaacagctccagtctacagctcccagcctgagtgatgcagaagatgggtgatttctgca<br>tttccaactgaggtaccgggttcatctcactggggagtgccagacagtgggtgcaagacagtgggtacagagcaccatgtgtgagctgaagcagggcgag<br>gcattgcctcac	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GPR128:NM:032787:15/16	
0	chr3	167845008	167845009	1001502	0	+	pAlu3-167764341; RIP_Alu_chr3_167_02	NA	NA	SINE	Alu	Ya5	atgttgctaatataaataaattttcaggaagttgaaataaatgaagttattgcaactttattttttgagcaatacttttctgaaatagtatccatgttaa<br>agcaaagtgttgattacaataatcatgttaatatcaataatcaattagtaaatccatgctaatgtggatactaagttgtttgactgtagatgcttttcat<br>tttcatgatccagtggtttagatgttgaattacattcccagcaataattcagtaggagatatatgtcccagccttactgtacctcagactgtttcaactt<br>tttgttagtgaccttggcttgcatagcagtctccatgtggatgttgagcatggtttatttggttggtattcagcattttctactttccttt<font color="green"><u>AAAAAGGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATTAAA<br>ATTAAAAAAATAAATAAATAAAAAATAAATAAA</font><font color="green"><u>AAAAAGGGGG</u></font>gagagaggcactacatttcacatgagactctacaatgactatatctttctctctctc<br>ttcacttgtctctgaggcctgagtcacagtcagctcctgttcattggttaaggtcactggaaattgaactgtaggtgaccactctacatgtttcaccaga<br>tttatgtcatagaatgagctactctattagcatcctactttcagaatattcagatgatgattgacgtttccaaatgctctcctccctctcccacatgcat<br>acagaaaaacaaattcagaaatcacatattaagaattaactcagcatttattgttctggtggcaacacatgatacgtgcgaggtcgggtcggggagctag<br>agattcagtaattctatataaccaggcttcctat	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	104936087	104936088	1001503	0	-	pAlu3-104734610;1104685641326; RIP_Alu_chr3_104_01	NA;NA	NA;NA	SINE	Alu	Ya3	ctgccactcactgcattcttttctacttatctgacctttggcatggtttctttcttgttccttagtaaaatttccaatattttctattacttaagaatac<br>atgttgttgggaaaaattttccaagttccaatattatcagttatcaacaagtggacatttttaaatgtcaccatcttatttttaaataaatacattttct<br>ttggaaagacatacaatccatttgtcacaattaagaaattaataaaaattattttttaaaaattactaactaaaaattaaccttaattctagaaactaag<br>ctatcttaagagttcaattatagtaaactaagaaatagttatcctcaatgatgggaattttatacttcccttaatcaaatgttt<font color="green"><u>AAAAAGAATTTTACTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACGAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>AGAATTTTACTC</u></font>aaatttcaatcatttgactcctaaattaataagactataaaattctaaagttgaaagagatcttcaaaagaagagactatataaatca<br>ttaattgaaggggttgaaatttgagactcaatgaagaaaaaagatttttcaagactccgaatctagtgaatggccagagctgaaacacaaaaatagttca<br>tcaaacttttcattttaaattttaattagtcatcacaccactctcctctaaggtagtaccaaataatagagtgcaatagtctgttataaacaccaacatc<br>agttgtttcagtcaactggtggattcacttactctttttgtaaattgtattacagcataaaaataaccagtaatgtgcaggattcttaagggaatg	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr3	101659957	101659958	1001504	0	+	pAlu3-101458495;1104685642042; RIP_Alu_chr3_101_02	NA;NA	NA;NA	SINE	Alu	Ya5	tctcccttgacaagggattatgaggtttacaattcaagatgagatttgggtggggacacaggcaaaccatatcattccatccctggcccctcccagatct<br>catctcctcacatttcaaaacacaattatgctttcccagtagtcaaagtcttaattcattccagcattaaacccaaaagtccaagtccaaagtttcatct<br>gagacaaggtgagtcccttctacctatgagctggtaaaatcaaaagcaagttagttatttccaagacacagtgggggtacaggcattgggtaaatgctcc<br>cattccaaatgggagaaattggccaaaacaaaggggctacaggtcccatacaagtccaaaattcagtggggcagtcattaaatct<font color="green"><u>AAAAACCCCAAAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AACCCCAAAACA</u></font>atctcctttgactccatgtcttacattcagggcacactgatgcaaagggtaggctcccatggccttgggcagctccatccctgtggct<br>ttgtagcccctctgcccagccctccatataccagctgctttcatggctagtgttgagtatctgcagcttttccaggtgcacagtgcaagctgtcagtgta<br>tctaccattctggggtctggaggatggtaggccctcttctcacagctccactaggcagtgccccagtagggattctctgtgggggctccaaccccacatt<br>tcccttctgcactgccctagcagagattctccatgagggctctgtccctgcagcacacctctgcctgcacatccaggtgtttccatacatcttctga	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr3	189381293	189381294	1001505	0	+	pAlu3-189300625;1104685595629; RIP_Alu_chr3_189_02	NA;NA	NA;NA	SINE	Alu	Yj	ccctgatggcccaagggcccttcccctttgtttctgtctggggaatgttctgtctcctctttcttgaacctccttatattccctcaagaagacttaaggc<br>aaaaacaaacctgaacttactatgtgtggtatttttgtgttataagtgtaggacctagtcatagtaacacatttcaaaaatatggaaccgtataaagaaa<br>atgagcatcactcataaatcactatttagacacaagcattgtttacgtttctaatattctttctttagtggtgcttttcatgattttatgtgcatttgca<br>ttttactgactaaatattactatacaaacattttcatatcttgccacttcccctaacaatacagcccaagcagcttctcatggcatt<font color="green"><u>AAGAATTGTTTGT<br></u></font><font color="red">GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTGTTTGT</u></font>acatgtaattttgaatggctgtatgctgtttcatcttaagaatataccataattctaatttttcatc<br>attataaatagcactgtgacgaacatccttcttaacaaaattctttgtctgcacctatgattattttctaaggtagattattagaatttgaaatgccttg<br>cacaaaggacagtaactttttcacccttagtttcagagagaacatgttgtctctggagaaacacagaaacatgaaaaagcataaagaagaaaataggcct<br>ggcacggtggctcatgcctgtaatctcagcacttttggaggccgaggtgggcggatcacgaggtcagggattcgagaccagcctggccaatatggtgaaa<br>ccccgtctctactaaaaata	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	downstream:FLJ42393:NR:024413	
0	chr3	156523370	156523371	1001506	0	-	pAlu3-156322276;1104685603528; RIP_Alu_chr3_156_02	NA;NA	NA;NA	SINE	Alu	Yb7	agagggtgttagacaccaaatagtcaccttgtcaaggacagttgtgctggatctaatgcagcaaatcccaccaagtctttagaaggctagatgtcagact<br>tgctgtggacaaatcatcttttcacagatttcaaaaaagagtgccttattagtgtatttaacaaatcagagtaattttaaattgtttttctaattaaaaa<br>taaatgtttactataggaaaataaagtaccttaaaatatgaagaaaatttaattccacctataaccaagctgaatttatattgtgtttaaccgtatggac<br>ctactagacaacaaaactcacaatttcatatgatttaacgtactattttggtatctgtctctttttcctatgcgtatacagtgat<font color="green"><u>AAGAATTTGCTTTTC<br></u></font><font color="red">GGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACT<br>GCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTTGCTTTTC</u></font>atttaatactatagagagattgtgaat<br>taaatatttatgtatgaatatattacttactagtttgtgttattcaaagttctcaaaattgtatttaaaattgcttagtcttttttacctgtaatttttt<br>tagctgctcaacagcaacaaaaaggcaacattaaatcggagtgaccactcttgtgttaagcattaagtataacagaaaattaaaaaattccttgatttca<br>aggcatttataatctcattgggaaaaggagattagtgttgcctgaatgagtaaaagtgaaacacccacaattccagtataaagtggtcttatattcagtt<br>acagattctaagtgctacagaagctcagagaagaaagaaatcaagattatctgaaatt	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	132938650	132938651	1001507	0	-	pAlu4-133112388; RIP_Alu_chr4_133_03	NA	NA	SINE	Alu	Ya5	acaggggtaaaaggtcacacacaatactgtagaacaatccaaaatattaatttattcctaaagtttttaaaatattagaataaatacagagcattttgtt<br><font color="green"><u>AAAACAATATGGTAAACCT</u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAG<br>ACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGC<br>TGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTC<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACAATATGGTAAACCT</u></font>aaatgtaaaaaaaaattaaattgagttaggaatttcaaaaagacatttcatgtgccttttca<br>actttcaatttcgtatgaaagttgaaaaaacttgaaatcagtaagtgtgcatgtatatgtaaaacaaaattactgcatataaaaacttttttgaggcatc<br>tagaaaatatttagcagtgtgccataatttagaggcacttaaaaatgctttttagtgatacataaaaaattaattaatgacacagtctatgaaaaacaaa<br>tagagcagcttgaaataattcacatatttttcatgtaaaacttttaggagaagtccagtgatgtcacgatagctctacgatgttgatttattttgttgct<br>tttatatgcttattttata	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	26047729	26047730	1001508	0	-	pAlu4-26126966;1104685316795; RIP_Alu_chr4_026_01	NA;NA	NA;NA	SINE	Alu	Ya5	tcaatgtgaggtccagaaacatgaggtctaacctgacgttagaaatgactactggctctatttatagatgaagatccattacctttaagatgaaaaaaac<br>gctttaagacaggggtgtcttatctttaggcttccctggaccacactggaagaactgtcttgggccatacacaaaatacattaatgctaatgatagctca<br>aaaaaaaatttaaaaatcgcaaaaaaaatctcacgttttaagaaagttggcaaatttgcattgggccacattcaaagccatcctggaccgcgggttggac<br>aagcttgctttaaggggtccatgatcactctccctagctttgtgtaatctagcgcatattcaagtgtaagacttggccaggggaact<font color="green"><u>AAGAATGTTAGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAATGTTAGCA</u></font>aagaggtcatattttttccccagacttttccttgtatcatctaaatataaatatctgaccaccacaataagaactcag<br>tcatgaaggtttaacgagcagaagaaaaccagaagccctgatttttgagttgtgtgatgaggaagaataaagggaaggacagccttgcagggaggaaaaa<br>gttctagaagagaagaaaagctgccagagccagctccaggccactgcaggaataacctagtcacactccttacccctttatatgatgatggtgggagtgt<br>ttctagatagttgaaatgtaagtaattatgagcatcctgactctgcccagcaccagtagacattatcaaacaggtaaagaagcaagaaattgactgacct<br>acatgctca	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	43094745	43094746	1001509	0	+	pAlu4-43249909; RIP_Alu_chr4_043_01	NA	NA	SINE	Alu	Yb7	aagttatatggtcaccatattcatgggaacctacattctctgattcgtacccacatgtccattctcattttttgctaccccttcctctctctctgtgctt<br>catctacacttgattttattttccttttatttttatgtctgtgacataatccatctattactgagtctctttttccatatattttccttatcatccctcc<br>tctctttctagttaagcccttttcattctccaaatcttagttctgaagtcagttcctgagtcaaacttttcatgaccctacagacaagatcagaatctgc<br>tatatgcttatatagtgctcagtagttaccacaatctgcagttatcgtatgtgtgctcctttttggctgatgccttttccttagtt<font color="green"><u>GAAATTTAAGCTAC<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAATTTTAAGCTAC</u></font>ctgaaaattagggcatatctttctttttctttaaccttccattttaccccaaggc<br>ctgacacataataacaagcatttaataattttaaatgcatttttttcttatgcagaaaaaggtttgaaccataaataaccatagtaagtgtgacactcag<br>ataacctgtgaagagatagctttaatctcaatcaaaggatttgtttatctctttcatctcctggaatatatgactcaaaggtcacccttgaatgatggtg<br>gaaagtgtcggctctgtctagacagggattgttctgcatgtcttctcacaaacgaagacaattaaggatgggtaagaatgatttattccaatctttctta<br>actatgtgggctgatgaaattgtacgtgttt	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	138518456	138518457	1001510	0	+	pAlu4-138692211; RIP_Alu_chr4_138_02	NA	NA	SINE	Alu	Ye5	tgttggttgagcagaagaatcaactaaactaagtaccttctggtataaaaagattctaaaatgtataattacacaaacataatacaagtttgtttctttt<br>tcatgtcaatagtaatgggtgataccaccctccatgcacttattcaggaccttaagttaacagaagttctgtgattttttaacacatggctgtaaatggg<br>tttatcttcattccaaagggtagaaaagcattctgtactctagcagtcaagaatatgctactctcaaatctctgactatggggagtaaaattgactatgg<br>tctcagctgctgtgctttgaaaatcaacactgcaattatgccacacttcccacaggctgctcccaactggtgactgggcatgtc<font color="green"><u>AAGAATAATGTTACCA<br></u></font><font color="red">GGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAAGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>AATAATGTTACCA</u></font>aaatgccaagggtttggtctaggtcctgtggctcatcacacataaagccaatcaaaagagacaatgagtattgccacggaagaaggc<br>tttatttggatgctgtagccaaggagttgagaggtaagtctcaattctatctcccccactgacttaaattaggggttcatatagcagtgaagaaatctaa<br>cgatatgtggaaaaataggaattagggagaggtaaggaagcggagttggtcaacaggcagcaaatggtcagtgaggcagtcataatggacgaggggtctg<br>gtgtttcattgtccagatgtagtgatctggtaaatttcagttccttggtactatctgggaggcctgatgatcaatttcctgagaaaggaactttgat	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	181740031	181740032	1001511	0	-	pAlu4-182087477;1104685740288; RIP_Alu_chr4_181_03	NA;NA	NA;NA	SINE	Alu	Ya5	tacttatgtgtgcagggacgtcaataattcatatttttgacatccagacattatatgacccactgaatattcttaattagttggggaaggaagcatctgt<br>atggattcacaaattgttttaaacatgcttttaaatattttaaattagagcttccaattaaaattgtacatgtcacattgtctcatttaattccactgtt<br>ctttttaggaagcacagcctcagctgaacaagcctcactgatgtgagctgagctcaattagtttctgatgttctgccaaattgcctcattacctgtcata<br>caaacaccactgacacttttaaagtggagccctttgcatccatattattgtctttagaacaaaaataattattctcattagagtagtaaa<font color="green"><u>AATAAGCATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AATAAGCATT</u></font>ttgctaataaacagtaaaccaatatatttgtaatataaataatacaataaagcaatgatgagacataaatcaagtgt<br>gtgcttacacatatacgtatgtgcccctgtggggacacacgagcacacaatgttttaaaattatatagactgtgggtccttcatgcagtccctggaggtt<br>tgttattacaattactttgaccactgggttttccatattaactgacaatgtattgatgataagagaaactaggagttttccattctgtctatatttgaat<br>ttaaaatgtacttcacccttggatcataaaaccattatgaattcctcattgtacagaaggcttaaagtggcttaaaatacacttacactacattctagaa<br>gagaaagtataag	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	180493964	180493965	1001512	0	-	pAlu4-180841405;1104685739857; RIP_Alu_chr4_180_01	NA;NA	NA;NA	SINE	Alu	Yi6	aacagaatagtctatatggattaatgaacaattaatttatttgtactactttctacttattaaaagatggacacaataattctgcagtattagaaaattt<br>cccaagttctttcttctcacttacattgctggacttctacttatacatattttcttcactgcataaaaaccttgtaaagttcaccaaaggctgtagaaat<br>tcctctgcagtgcagacaatgcaaacaaaatccacataaagattcccactacagggtaaactctcaaaaatattttctggcactacttgacagcattgga<br>aacaccaggccacttttgaatgcaataaatagactctaacatgcaacgcatatacctggacacattctggagacatttaggcaat<font color="green"><u>AAGAAATTTGATTTA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCTAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAAATTTGATTTA</u></font>atggagtaaaaggcagaagaggtcaatggaactagctgaccaatattaatcacagacttgttaaaactgttatcaagaaacaaa<br>tacaagtaataatttatagaaagaggattagacacatgagctgtatgtaccagatgtcagcatgctattctcaaattttctaaattcaacaaatgcttcc<br>tagagtgaatttattcttctaaatttagcagcttatgaagggaatttttaataagcaagaaatacctgtaatctgtttaagttgtctatattaattaaga<br>aaattggctgcaaagcacacttaaagcctattcttcacgatacacaaaacaactttacctacatagtttatctttgaaaaacgagtttattttcccatac<br>c	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	175770881	175770882	1001513	0	-	pAlu4-176118742;1104685738339; RIP_Alu_chr4_175_01	NA;NA	NA;NA	SINE	Alu	Yc1	agagaattctgtacaaacagactttgttaaaataattcttatctttcattagcctccccacataatttagttacttttccagaattgctgctctttgtta<br>aacctgataatatggtttagatgtttttttccactccaagtctcatgatgtaatgtgatcctcagtgtgggaggtggggtttggtgggaggtgtttgagt<br>ggatccctcatgaatggtgatatgggttggctgtgtctacccccagatctcatcttgaattgtagctcccataattcccttgtgttgtggaagggaccaa<br>gtgggagatatttgaatcatgggggcagtttctcccatactgttctcatggtattgaataagtctcacaagatctgatggttttat<font color="green"><u>AAGGGGAAACTCCT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATAAAAAAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGGGGAAACTCCT</u></font>ttctcttggctctcattctcttctgctgtctgccaccatgtgagatgtgcctttcaccttctgtcatgat<br>agtaaggcctcaccagccatgtggaactgtgagtccattaaacctctttcttttgtaaaatgcccagtcttgggtatgtctttatcagcagtgtgaaaac<br>ggactggtaatagactggtaatgtacagtaatggactggtaccagtagagtggggcactgctgaaaagataccaaaaaatgtggaattgactttgaaacg<br>gggtaataggcaggggttggaacagtctggagggctcataagaagataggaaaatgtgggaaagtttggaatttcctagagacatgttgaatagcttcac<br>ccaaaatgctgataat	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	175023283	175023284	1001514	0	+	pAlu4-175371158;1104685738113; RIP_Alu_chr4_175_02	NA;NA	NA;NA	SINE	Alu	Ya8	gttagtgacagtcctgtccatcactgtttctgatattctgaaatttgtgatggcttagaaatgaaactaaaagcatttaaaaattttgagtagaaagtga<br>aattttcagacttaagggactttgaagtgaaaaaaaagttgaggcatagagctttaagagtcaatttccatcttcgttagcttttttttctttacttaaa<br>aatatcatcttaaaaaaaaaacactgagccctttatcacaatttttctccatactttcctcttctggtttatggacttctgcataggaattagtaaaatt<br>tgtaggcaaaactttagtttcatatgggacccatttaattgtgtaccttaaatccattggaaagctagaataagctttcatcttaagaaa<font color="green"><u>GTTCTTTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAG</font><font color="green"><u>GTTCTTTCTG</u></font>aagataatgggaggcttctgtttatggaccaacaatttgaggaatgtagtgatcacatgtatacaaataaatggctcaaaa<br>aaggtcctcaataaatcataattatcacttattattgagtctagaatgataaaagaattaacaaaatatgttttataggcatttatttaatttaaataat<br>gctttatctaaaagtctgaaattttgaatgatataagggaaattaaaataattgccttctattttcaattaactaccactataaccaaaccataaaaatg<br>tttatttttttgaaatacgaattttggtaacatcctgtatgtctcaatgtagcctattgattaaataaattatataggtatttatatcatataaagtatg<br>ttgtcatta	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	167558250	167558251	1001515	0	-	pAlu4-167804973; RIP_Alu_chr4_167_04	NA	NA	SINE	Alu	Ya5	gatataatagattttataaaaagtttcatccaacagctgcagaatacactcttctcctcagtacataaattattctcaaggataaatgacatgttaggca<br>acaaaacaagtcctgaaatactcaaaaagtttgaaataatatcagtcatattctcgatcataagggaatacaattaaaaatgagtaaaaataggaatttt<br>gggaattatacaaatacatggaagttaaataatatgctcctgaagaaacactggatcaaagaagaaattaagaaaaaaatttaaaaattacttgaatcaa<br>atgataatagaaacacaacatacaaaaacctataggatacagtgaaagcagtactaagaggagagtttacagctataaactcctgcattg<font color="green"><u>AAAAAGTAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGAAAAA</u></font>agtagaaaaatgtcaggtaaacaacctaataataccttttaaagaactgaaaaagcaacagcaagccaaacctca<br>aattagtagaagaaagacataataaagatcagagcagaaataaatgaaatggagatgaagaaaacaatataaagttcactgaaacataaagttgtcttaa<br>aataaacaatttaaaaaatcaacaaatctttggccagactaatgaagaaaaaaagagagaagaccccaaaacttacatcagggatgaaaaaggagttatt<br>acaaccaatacaacagaaattcaaaggatccctagaggctactatgagcaactatgtatcaataaactggaaagcctagaatacatggacacattcttag<br>acacatacaacttag	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	164977214	164977215	1001516	0	+	pAlu4-165223948; RIP_Alu_chr4_165_01	NA	NA	SINE	Alu	Yd8	cagagtaactggagaaaaatttgaggaggtctaattttaagtgaccaagttgaagcagaagccattctaatgtgaattttaataattgctcgtatataat<br>acaggactgaattagagaaatagaaatgcattttttgtgaaaattaaaaacatcatatgtataaatataaggcaattatcatatttgtataatcataaga<br>aagttaagtgcctaacataaataaggacacaccactaatttttggtggattcagaatcannnnnnnnnnnnnnnnnnnntgccttggcctcccaagtgct<br>ggggattacaggcgtgagccaccgcgcccggctaatttatttttttgatacacatttactctacgttatatttcagggcttgttaaaaga<font color="green"><u>ATGCCTCCTA<br></u></font><font color="red">ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GTGTGAACCCGGAAGGCGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCAGCCTGGGCGACAAAACGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAGG</font><font color="green"><u>ATGCCTCCTA</u></font>gtctctctgctgtgaggaagaaagttctacctttagaataaagtagacaaaataaggaaacagagggtccat<br>ctggccaaagctgagtaatagaagctgtagtcatcagcagaggtaagtgtgacccccaataaacagtgataccaagtgcgccgccattggcagcaaagag<br>cactgagtctgcttgatgacaggactacaatagaagaattattcctgatctcatgtgagttagcccattagccccctggaagcctcacagagtaactgga<br>gaaaaatttgaggaggtctaattttaagtgaccaagttgaagcagaagccattctaatgtgaattttaataattgctcgtatataatacaggactgaatt<br>agagaaatagaaatgcat	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	151231090	151231091	1001517	0	+	pAlu4-151477829; RIP_Alu_chr4_151_03	NA	NA	SINE	Alu	Sp	ataatgataaaaacaaaacaaaacaaaacaaaaaaacgcacaatgaaaattcccatagtgagctcctgtagattttgggaggccgaggcaggcggatcac<br>ctgaggttgggagtttgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaaattagctgagcgtggtggcgcacgactgtaat<br>cccagctactcgggaggctgaggcaggagaatctcttgaacctgggaggcagaggttgtggtgatccaagatcgcgccattacactccactccagcctgg<br>gcaacaagatcaaaactccatctcaaaataatgataaaaacaaaacaaaacaaaac<font color="green"><u>AAAAAAACGCACAATGAAAATTCCCATAGTGAGCTCCTGTAGAT<br></u></font><font color="red">TTTGGGAGGCCGAGGCAGGCGGATCACCTGAGGTTGGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAAATTAG<br>CTGAGCGTGGTGGCGCACGACTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCTCTTGAACCTGGGAGGCAGAGGTTGTGGTGATCCAAGATC<br>GCGCCATTACACTCCACTCCAGCCTGGGCAACAAGATCAAAACTCCATCTCAAAATAATGATAAAAACAAAACAAAACAAAAC</font><font color="green"><u>AAAAAAACGCACAATGA<br>AAATTCCCATAGTGAGCTCCTGTAGAT</u></font>tttgggatattcttggccccatgtatgaggagcaaaaaaaccagatcacagatctgatctgctggttccatcc<br>tacccaggagattagatacgatttcttcctcagtgggtaagctacaaagctttttggttactgggtgggttttcgtttttacatttagctaatttatttg<br>gccttaagttaaactcctcccagatttcaatgctaaaacatggatttgtggacatacctatttcttcatagatattcgtagggtcaaagcagattttgta<br>cccccttctcggtagaaggtatcacagaccatacaactggatgtgactttaggagatgatttggttcagtcacttgcctgcag	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DCLK2:NM:001040260:1/16	
0	chr4	104964066	104964067	1001518	0	-	pAlu4-105137815;1104685673325; RIP_Alu_chr4_105_01	NA;NA	NA;NA	SINE	Alu	Ya5	gaggtcgggagttcaagaccaacctggccaatgtggtgaaaccccatctctactaaaaatacaaatacctgagcgtggtggtgcatgcctgtaatcccag<br>ctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgtggggagccgagatcgtgccattgcactccagcctgggcaacgagga<br>agacaccatctcaaaaaaaaacaaaaagaaaaagaattagtagcatctctttgcttaacctgtctgagatcagttggacagagaccaatcaaatatggcc<br>atgtctctattaaaccttggctcagccaggttattctgcagggctcttatactaccgccttaccctgtgtatgaaggatgctgct<font color="green"><u>AAAAAAAATCACCTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA</font><font color="green"><u>AAAAAAAATCA<br>CCTA</u></font>tggtgctgtgtctatgttttgtggaaataatatggctcaagaagactcaatctagccatctctttcaagctgcccaactcatactgtcctgccaaa<br>tttactctcatgtagctgcatgccagttggtacagagtggccaatgaggagtctgcacgtacactcccaacggtgattatgagtaacatgtgtctgctcc<br>tagcttaaattatgatcattaacataatgtactccttagtaagacaaggcccacagaaaagagaatcagaacataattcagaaattttttgtctcttttc<br>tatttttgtttccacacttcccttagggactaaagaataaattaacagtttcttcattcatttttctgtatagatttccccataatatt	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	66789212	66789213	1001519	0	+	pAlu4-67044377;1104685186329; RIP_Alu_chr4_066_02	NA;NA	NA;NA	SINE	Alu	Ya4b	tttttgcactagctgaaactttctgcctgaaaccctcttcacccatattatttcatgacttatcccttctagactctgagttattggtgaaaatgtcatg<br>tcctccaaaggactacttgctgcctaatagttcctaatttctttattagtctattcatttattttgtggcttcctccacaagaatataagctccacaaga<br>gcaggggattttgtcttattcgtatcattctatcttcaaagagggtaagagtacttgacacattattggcactcagtaagcaattattgaatatgcaaca<br>tgcaatgataggagtgccccaattagtatagaaaatcatagatacgtctttgtaggaaaagacacttgcagaatttcaagtt<font color="green"><u>AGAAAGATTAAGATTTGC<br></u></font><font color="red">GGCCGGGCGCCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AGAAAGATTAAGATTTGC</u></font>tcaggtgtcctttatgtgtgggctgaaaaaaaaaaagttattatcctgaaaagaataacacggtatgagggagttcacctt<br>acatggataaagaaggctgtgttgatgacctcaaaggaaaaggcaacacaagaaactaaatgtttataaggtaatgtcacttcttagtaaagcttgtgtt<br>taagactggaagacggaagacactctttacgtggtgttccagcaatcttgcttgataaaaatgtcttggtataagatcatgaagaaaaagtaagtgtaat<br>tattaggatgaaggggagagaactttgctttctaaccagggacctcagccagctggagaacacttgctacacttgactagcaatcactgaactgtgtata<br>a	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	79378540	79378541	1001520	0	+	pAlu4-79552295;1104685667515; RIP_Alu_chr4_079_01	NA;NA	NA;NA	SINE	Alu	Ya5	caacttaaccatgatcatgcaattaataaactgctgcccagagattttacctgaagtctgactgatgccaaagctactgacattaacttcaacatgcatg<br>aaccatcgaatggattgaaagtcagaactgacttattgaaaaagattttctaaaaatatcatttgggtctgccactgattgtattattgtgctactattg<br>ggctccctaggaacataagcaagtctttgactcaataaatctccttgtatttgaccaagtctatgattggtatttcctcccttcccttctgttaaaaatt<br>ttcagttttcttctgactacacatctattctgttagaataatactttttctagttgctgactcttttctttttaaagtgaatctattttt<font color="green"><u>TAAAAAAGCT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>T<br>AAAAAAGCT</u></font>taagctttaaatttgaacttctgaaactcccaggacaagaccaattattgtattcataaagcattctgtcaatttaaaaagtttatttttc<br>tagtttttggcttcctccaataattaatcttgagtctttatgccatctaatgctaataaggttctgtttgtaccagacactgaagtgaaggtatgccttt<br>aagagtattccttcatttctgcatgagtgtattcctgagaagctgggagtactttaagtattggcaaatttgataagatttttattgtatattatggagc<br>tttatgtttatagggtaaatattcctaaaaaaatcattatttggcttgctaagcaagtcatgtcagaatctgagctggtggcaaaaacgccatgaaaaa	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:FRAS1:NM:025074:3/74	
0	chr4	82849173	82849266	1001521	0	+	pAlu4-83022928;1104685668257; RIP_Alu_chr4_082_02	NA;NA	NA;NA	SINE	Alu	Ya5	tttattgcagcacaattcataattcataattgcaaagacaagtaaccaacctaagtgcctgcccatcaaccaatgagtggataaagaaaatgtggtatat<br>atagatgtggaatactactctgccataaaaaagaataaaataatatattttgcagaaacttgcatggagttggaggccattattctaagtgaagcaactc<br>aggaatggaaaaccaaacaccgcatgttctcacttgtaagtgggaactgaactatgggtatgcaaaggcatacagaatggtataatggactttggagact<br>cagaaggggggaaggtgggaaatggtagtagagaaaaaactacatattgggtacaatgtatactacttgtctgaccagtacactaaaat<font color="green"><u>ATCAGACTTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCTGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>ATCAGACTTCA</u></font>ctactatacaattcatccatgtaaccaaaaaccacttatccccaagagctattgaacttgaaaaaaaaattatctgttttt<br>tcattctccagctgaatggataagacactaagaatataaaagagggtagaactgtaagatggaaggaagttgggtctctgaatggaacatctcctcatcc<br>ctcccatctgaacaagaaaattaatttttattgtatcaagctactgaaatgcaggtttttttcatacagtagttagcctgcctggctagtgagtattatt<br>attaccattcaaaagcagaagttttaagaatgtaaggaatggaatttaaattataaatatatgtttaagtttcattctagtgaaaataagatacttgaaa<br>atgccaat	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	83559717	83559718	1001522	0	+	pAlu4-83733473; RIP_Alu_chr4_083_01	NA	NA	SINE	Alu	Ya5	attaatagaaatgttattacataatgagagcaatatatttgacaaataaagccattcaaaacacattgtctatggagagaagaaatttaaagggtttcct<br>ggtgatgaaatattgaaattattctataataccacttaacccccactgctcccaccctcctgtcattcctctgcttgcagggtctatgaaaaacatatat<br>gccccagatgtttcatggttcaagggcaatctaaatagtgagtcaatttcataggccatgtctttcatgggaagagtagttgctccagattatccaggct<br>caaattccattaaaggaacaagaatggatcaattgtaatataatcctactttgctacaatagagctcaacactcagaaaccaagtgtatt<font color="green"><u>AAAGATTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGATTACTG</u></font>gaccagtcttaatgcttaaagtcaagtatgcctgataggagttttatagtttaatagactgcagaatgta<br>atcagcattggtgcattcaattagctgacttcctcattttaaaatcaggggattaaagctaaagctgggcatggtgacacatgctggtaatcccagcact<br>ttgggaggcctaaacggtaggatcactggagcccaggagttcgagaccagcctgggcaacatagtgagtccctgtctctaagatgataaaccaaaaaaaa<br>aaaaaaaaaaaaaaaaaaaggttaacttgggcgatatggcaagacctcatttctactaaaaatcaaaaaaaaaaaaaaattagctaggtatgatggcaca<br>tgcctgtggccccagctaca	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	56066719	56066720	1001523	0	+	pAlu4-56221885;1104685021301; RIP_Alu_chr4_056_01	NA;NA	NA;NA	SINE	Alu	Ye5	ggctcacacctgtaatcccagcgctttgggaggcggaggcaggcagatcgttagagctcaggagttcaagaccagcctgggcaacatggcaaaacccctt<br>atctactaaaaatacaaaaattagctgggtgttgtggcacgtgcctatggtctcagctacttgggaagctgaggcaggaggatcaactaagccctggaag<br>tccaggctgcaatgagctgtgactgcaccactgcactccaggctgggtgacagaacaagaccttgtctcaaaataaaaaataaaaaataaaattaactgg<br>atgtaatttccagttttatacatagctgctaaacatgtttcttaaactttatacttggaaatcattcaaacatgcagaaaagtt<font color="green"><u>AAGAATAGTTCAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGGCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAATAGTTCAAAGAG</u></font>gcttctacatatcctttatcctgatttgaccaactgtcaacaacaatcctgttgaccaactgtcaacattttgcat<br>tattgtccatatcatacataaacatattttttgaaccatttgaaagtaaaatgcacatatcatacctttttacctctaaatacttcaactatacctccta<br>acaacaaggatattctcttaaatatctacagtatagttaccaacttcaggaaacttaacagttatacagtatcttaatgtaatgcctattttctctcttt<br>ttttgttttagttgagcaaaaactgccctccaagactttttccctcttccaatactgaatccaatccagggtcatgtactgcatttagctgtcatgtcta<br>cccagact	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:CLOCK:NM:004898:2/23	
0	chr4	100595831	100595832	1001524	0	-	pAlu4-100769574;1104685672398; RIP_Alu_chr4_100_03	NA;NA	NA;NA	SINE	Alu	Ya5	tctagttgtctgtctgataaatgacattggctagtattccttcataacatctctcatctctagtggagaaattgataaggaaatatgagaagaccaaaac<br>tagaggagcagttcagcttatagaaatgctaagggaattcaaagggacttgaaaaacagataagctttaaaatatgaaaaatgctactttttaatcaaaa<br>gtgacattacaattttagagactaaaacatgatgttcaagaaaatgtctttcattgaaagaatacaaaaatgtagactggtagttcttcatagagtatgt<br>ttttgctgagaacaaattagcctagattttatctttactcttctttttggaaagtagagttatttggggacaaaagattattgatat<font color="green"><u>AAAAGTTGATTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGGGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AGTTGATTAA</u></font>acatgtattatattgtaaacttcttggaacagaaactacatcataaccattttaatactgccaacttaaataacaaacagaagaaaaggc<br>tctccaaaagaaaatgatgtttattcaggaatagggtattgcaatgggaatatgtgtgccacagtgtactatgtgcacattcagggagatgaagaaagac<br>aaaggttttgaaaggaaaaatgaggcgggatgtggccaagaaagccaactagaagcagctagtgtgcatggctttcatggagaaaaagagaaggggcaag<br>taaatacaacaccttcaactgaaacatccaggtacccgcattgggactaattaaggaaacaatttgacccatgaagaatggagaaaagcaaggcagg	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	102260771	102260772	1001525	0	-	pAlu4-102434515; RIP_Alu_chr4_102_01	NA	NA	SINE	Alu	Yb7	tgatttttgcatagtttccttagatatttgtggtatactgaagaaacaagaaacttaagacccgattcatgtttaaattagagacagccacatatgtaaa<br>ttttcaaaatattcaaagactttatggatgttatgatttaagtcagtttaagatactgtgacacctatttgttttatagaggtaaacaaaaatgattcat<br>ctcactgtggcatataaaaaaacttttatatagtgtcttcaattgaacattagtcctgacatgtaaatttaagataatctaatctaagttctcagatttt<br>tagatttgtacttcttttggacaaagaaaacaatctcatgccttttcttaatgtaatttgaaatttcaaagtgaaaacatcattataa<font color="green"><u>AAGTAAATGTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAAGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGTAAATGTAA</u></font>agtatttataatttaacaattatttttagaaaaattatatatgctactgcctctgttgagtaatgtgatggatgg<br>aaatgggcaataaaatgatttgcccatatcagacatcaacgggagacctaaggcctaaacccgtaggagtttccagtacagagagggaaatccactgatg<br>tcaggaagctgatgcttttcagtaccattgtttatatctacatcttctcaagtatgcccttcttgaagccatatttttatttttgttattatcccagtat<br>aatgcagcacaagtgaaacgtcaaccagtcttcagtgtttattcatcttttaatacagaatatttagtaaatatttcatgtttcagtgttttattcattg<br>tttggatatttaa	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PPP3CA:NM:001130691:2/13	
0	chr5	103492326	103492327	1001526	0	+	pAlu5-103495288; RIP_Alu_chr5_103_03	NA	NA	SINE	Alu	Yb7	acattatttaaatgcttttcttcaccttttaattagagaagacttcgaatgctggtttgggaagaagtgaaaaaggaggatttcttgcggtactgcctta<br>acttgtgcatcctagtcagtaaaatgagctttgtagataaatgggtccattcattatgggaaacagcttaacaaatatcagtagctattgaaacatgtat<br>ctttgaggacaatcttgtcccaaccctcttacgcaataccactttcaatcatatagagttctggaaattcaatattatctatcttattatatttacagtg<br>gtattttgacttcccctatagactggaaattggcttcctggcagctcacgagcacccttgacatttaaaagagatttagtt<font color="green"><u>AAGAAATAATATATTTTGC<br></u></font><font color="red">GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGGTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTACAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAAATAATATATTTTGC</u></font>ttggcttatttgcatttaagggcttggtggtggggacaatgcaagtctggaatttaaaagagcctacagcaggaaa<br>tatcactttaaaagctatcgtaatattgatagttaaaaccatgttaattgatgtcttcttggtaaggaaagaaaaatatagagaatcatgagcttaaaag<br>cacttgagcacttgggaacaccaagatttaaagatggaataaggaagagcaattggggaataaaacagaaaaaaaaacccaaaaaacaaaaaagtagtca<br>gaattgtagaagagattagaaacattgtgaatggaatgacaggaaaagatgaaagtttcaataaggtgatggtgaatagtgtgggaaagcgaaaagaaat<br>acttg	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	61892876	61892877	1001527	0	+	pAlu5-61827643;1104685480632; RIP_Alu_chr5_061_03	NA;NA	NA;NA	SINE	Alu	Yb7	atgggctacatacatgttttgaataagtctgcttagctgtcaggattaattagagtcagtttctggttttgctcaaattatccatttccagctcatgact<br>taaccccagttcaggtattccagttctgtggtttactataattgaattttaaccatgacttatgaggctttagcctttaaaagtatttacccacaagtaa<br>aacatattttaggtattttgagatgcctcctcctcttgtttcagatggaccagcttttgggaaatatgattgaaatgtgggttgatcgaatggacaacat<br>tacccagcctgaaagaagaaaactttcagctttggctttgctctctcttctgccatctgataataggtgaggaaatgttttctt<font color="green"><u>AAAATTTGTTTCTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAATTTGTTTCTTTC</u></font>aagcatcaaaatgtaaacactatttttggccatcagtattgctgtgtgttgctgggcagtggtacttttatata<br>tatggatgtgaattttgttagctgataatgatgtggtaaatgttggtctggatccagaaagcagtgagtgggataggtactgttggattgtgggggctgt<br>agtttattttggttgtattcattttacaaatttatttcattcttgtctgaatttccattttttataattacgttttattagactaatcttcagtcctctg<br>tttacatagatatattaaatatctaacatttcaaagtcaatagcacttcataaagtatgttataaagtgtgttaattcaacagtattattagttttgttt<br>tctttttatt	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:IPO11:NM:016338:27/30	
0	chr5	55963738	55963739	1001528	0	+	pAlu5-55898505; RIP_Alu_chr5_055_01	NA	NA	SINE	Alu	Ya5	gaagtcaactgctcagaggtatttcaaatacccagaaatgtccttatacaccacagtgttcaatcaacttccccaaagtcccaacagtcgtttagaatat<br>gacttcacccaggactgctgggttgcacaactccaggtatactgtttgtattatattctatgtgaaggtctcccctggagtagtacagcattgccccagg<br>ctgttttcctacatttatacgagagtaaaaatgaagaggagaactctctggctacctaaaaaaccttgtgttgatctcacctcagggctaatgctggagt<br>ctcttttggctttagtgccaaggctctacttgttgattcacttatcaaaatatatttgaatatattttccaggcagaaagcctttt<font color="green"><u>AAAAGATACAGAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGTCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAG<br>ATACAGAGA</u></font>cacaaagcttctctaagacaaactctgaaccagggcaacagagaaaccctctgctcccaccaccaggctatctagttgaaacaggagttat<br>gactggataagtgtcaagaacataaacggaaactgtctctgaagcacagggcataaagcagccttaaagctgaagatggagtagaagcattgaaaaaaat<br>cctccagtaatccaacctccaccccaagggcaaggtaaaattagatgaattgaactcaatgacacactgagggcaaccatggcaacagcaaaagccaaac<br>acaattcagctcctgattagactgattcaacatcaccccctccttcctgattaatagcccagcagaagggacgtgtccatttctaggcataagga	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	39328738	39328739	1001529	0	-	pAlu5-39293110;1104685203214; RIP_Alu_chr5_039_01	NA;NA	NA;NA	SINE	Alu	Yb7	gctatctatatctcttaaatggggaacttaatgtatttaccttcaaggttattattgataggtgaggacttatccctgtctttttattgattgttttctg<br>gttattctgaatatcttttgtttcttttttccttcctagttgtttatctttgcagttgaatggctttctgtagtaatctgggcatgtaagaccccctggc<br>cttccaaccaccacagatgcctttctgcttccccctgaactccagcactctccctttaacatttcagttaaatcttgtttattcattacattgttccttt<br>cttgtcctgactattcttttttattcagtatgttatatgattccattttatttccagtattgatatattactcatgtctcttttaaaaa<font color="green"><u>ATATTTTTTAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAATAT</font><font color="green"><u>ATATTTTTTAC</u></font>tctataacatatgattcacaatatacatccttaatttatcatagtctgccttcaaatgat<br>attatgctgccttatgtatagtgtaaaacaaatacactatatttccaaatcctccctcccatttttaatgctatttttatcatattgtatcatgagttta<br>tagtgtatgtatattttacatacatatttttaaatttttacatacactataaactcatactacaatgcgacaacatttgctgtagataatatatgttaga<br>gcaattaaaactagaaaggtatatttttgccttcattttagttatgctcagagctcatgattactttatgtaggtccaaattttagttctttgtggtaat<br>tcttctgcctgaaaaatttcctttggcat	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:C9:NM:001737:9/11	
0	chr5	45641876	45641877	1001530	0	-	pAlu5-45606247;1104685204628; RIP_Alu_chr5_045_01	NA;NA	NA;NA	SINE	Alu	Ya4	gtgaaatcatattctctttttttcctatttttaattattttttctttttttgttttacatcagcttagacatgatatacatatatatgcacccctacccc<br>acacacaatctgttctgtaccaggtggagtttctgtatacactcactttgttatactgtctaaaacaaaaatcgtttgttctttttctatttttcactag<br>gtttaatgcaaaggaaaatgttttaaggtataaaagtgagagaaattttctggcaatggttgcttaagtagtataagagtcatggtgttcttgatggtgg<br>aaccataaactgaaagagttggctgacttaacatttccaaccctgcctggggaatatttgacaaagtttgaggtgaaagtttgtgtt<font color="green"><u>AAAAAATTAAAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAAATTAAAGG</u></font>atgtgaagctaatatttcccatcaagtatgcttacctttgaattttaattttgcttataagtttcattattcacacacaagt<br>cagaaatgttaatttagctctttctttagatgtattaatttctctcacaaaatgtcttttcaaacttattttttaatcttcacaggtgagttaattttct<br>ttaatttgtaatcatttttaaacaatattaccagagtgatacatctactctttaaaattgtaaatataattatgctaagagaaaaatgaaagtcctcatt<br>cagatgaggactgactccaatagtttcattcaccagataacaactgttaattgatttatctacattcttccagtctctttggctatgtactcatgtacaa<br>tgtac	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:HCN1:NM:021072:2/8	
0	chr5	170133918	170133919	1001531	0	+	pAlu5-170136882;1104685440859; RIP_Alu_chr5_170_02	NA;NA	NA;NA	SINE	Alu	Ya5	ggcactggaatacagcagggagaaaagagataaagaccctgcccatgtgaagcttgtgcactacggggaggagaccaatcaataataaacataacaaatg<br>actcgactgtggaggctgctagaaggagatgaggcagggaaaaatgagaagagcagggtatgggggacagaatggctgtgatggcgaatattggaatatg<br>aaatgtgactgacctgtagaggcagttagggaaatgctgattttgcaaatgagatcctgtcatttccaacatggatggaactgggggacatgttagatga<br>aataacccaggcacagaaaagctcacttcccaggttctcattcatttgtgggagctaaaaattaaaacaatttaattcacggggat<font color="green"><u>AGAAAAGTAGAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AGAAAAGTAGAATG</u></font>atggttaacagaggccgggaagggtagtggggttggggggatgtagggatgattaacaggtacaaaatatgcaatg<br>aaagcaatgcaatgaatatgatctgttattgatagcagaacaaggtgactacagacagcaataatttgttgtacattttcacataactgagggagtacaa<br>ttggaatgtttgtaccacaaggacatgatgaatgcttgaggttatggagaccccatttaccctaatataattattacacattgcatgtctgtatcaaaat<br>atctcatgtatcccatcaatatatatatacctactatgtgccataattttttaaataagccatgctgaaaagggctcaatgaagtgacaaacagaatgaa<br>ttattttccc	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr5	162164530	162164531	1001532	0	-	pAlu5-162167486;1104685442930; RIP_Alu_chr5_162_01	NA;NA	NA;NA	SINE	Alu	Yc1	gaaagaggaaaaaatacagaaatagggaaaacaaatttcaaagacagagatattgaacagcatacctatcttaaatctggtgctggaagaaaggttgtga<br>atatatttttaaaagtagtacaacttacttaacaatgatcctgggtttccatgagttgtattttccatactacccaaaataagcatctctgataagcaag<br>acttagtgctttagttaacattacatgtttaaaataaaaaaaaaaaaataagaaatatacttgttttaagttaaataagtttttctctacaattctcatt<br>cttttgctttatataatcatgataattattgctgatctctctgttgctatcaaataccacccctggaaagtttaggattgttcctt<font color="green"><u>AAAATGTACAGTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAATGTAC</u></font>ataaaatctgagaaaatctactttggttagaatacacatgtgaggaatgggctaagtgagtaagctgtagcaagaagagatggtttcctg<br>gaaatagaagcagaggaagcttttgtgattaaacataaatcctttgagtattctattagttagggggccattttttgtaaataatgctctcttttgaaga<br>tgcaaagccaataaaacttttttttatttttttttattatactttaagttttagggtacatgtgcacaacgtgcaggttagttacatatgtatacatgtg<br>ccatgttggtgtgctgcacccattaactagtcatttaacattaggtatatctcctaatgctatccctccccccaccccccaccccacaacaggccc	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr5	155223203	155223204	1001533	0	+	pAlu5-155226167; RIP_Alu_chr5_155_01	NA	NA	SINE	Alu	Ya5	taatggccgcccctgcagcctggcttcccacctggctgcagtttgaggcagcaggttctcattatgctttattcttttttcaagaatgtgttcttgaaat<br>tgaattagatttgcttccttcatagcatgtgttgacttttaaatgacttcctggtgggttttcctcaagatcttcaaccacgatgcagaggttctcaggg<br>taaaatgaagtatccaacccaatgagaaaacaatgtattatttccttaccttcaggtttaactggaagatgctgcattttgagcagtcatgatctttatt<br>tccccaaatgcttttgctttccctgctgggatggcctaagtcaattaccgtcctctgcctgaagtattattagtcttcattcccagaac<font color="green"><u>AAAGAAAATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAGAAAATTC</u></font>ataccatcatccaggaaaattgccaatcttcttgaaacggttgcattttccatgggtactgaaatgtactctccatgggagat<br>ttggagatgaaggtcaggattccctatagatgtatcccagggatgttgctcagaaagatatctctttcctttaagtacttgagaaggaatctgaattggt<br>aatgtttctattgtttttcatttgtttattcattcattaatacattcaacagatatatattgaccatctgctgtgtgccacgcacataatagaaaaaaca<br>gacaaggaccctactgtcatggaaactgcatttcagtaggggggacagacaaataaacaatcaaataggaagtacattagatagtggtaactgctaagga<br>gaggag	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	148076974	148076975	1001534	0	+	pAlu5-148079938;1104685235457; RIP_Alu_chr5_148_01	NA;NA	NA;NA	SINE	Alu	Yb7	gcactcaatactaacctgtgaaaacagccgccctgggctgtaccctgcagagccacaggggtggagccgtccaaggccttgggagcccatcccttgcatc<br>tgtgtgccctgaatacgacacatggagtcaaaggggatttttatggagctttaaaatttagtgacttgcctgctggatttcagacttgcatggggcctgt<br>agctcctttgttttggccaatttctttcatttgaaatgggagcatttacccaacgcctgtacccctattgtattttggaagaaactaacttacttttgat<br>tttacaggctcataggtgggagggacttactttgtctcagatgagactttggactgtggacttctgagttaatgctgaaattagtt<font color="green"><u>AAGACTGGCAACTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGACTGGCAACTG</u></font>ttgaaaagggttaattgtattttgcaacgtgagaaggacatgagatttgggagaagcaaggggtagaattatat<br>tgtttggatttgtgtccctgcacaaatctcatgtcatactgaaggaaggacctggtaagaggtaacgggatcatgagggcgatttcccccttgctgttct<br>tgtgatagtgagttctcaggagatctgatggtttaaaagtatgtgacacttcctccttcactctctgtctctcctgctctgccatgtgaagaaggtgctt<br>gctttcccttcaccttctgcctctcctgctctgccatgtgaagaaggtgcttgcttccccttcaccttctgccatgattgtaaatttcccaaggcctccc<br>agtcatgcttcc	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr5	146349820	146349821	1001535	0	+	pAlu5-146352784;1104685235827; RIP_Alu_chr5_146_01	NA;NA	NA;NA	SINE	Alu	Yb7	aggtttttctctaagatctagaacaacacaagaatacccacgtttaccactttatttgacatagtactgaatattctagccaaagcaagtaggcaagaga<br>aagaaacaaagggcacccaaattttaaaaagtggaagtcatattgtccctgtttgcagatgacatgaccatatacatagaaaatcctaaagactccacta<br>aaaaactattagaattaataactgagtatagtaaagttgcaggatacaaaatcaacacaaaaatcagtagcatttctatatgctaataatgaactatctg<br>aaaaagaaatcaagaaagcaattctattacaatagctacagaaatgctagacataataaccaaggaggtgaaatatctctacaattaa<font color="green"><u>AACCATAAAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AACCATAAAACA</u></font>ttaatgaaagaagctgaaaaagacaaataaatgaaaagacatcctgtgttcatggattggaagtattaatattgttaaaatg<br>tccatattatccaaagtaatcttcaaattcagtgcaatttctgtcaaaataccaatgatattcttctcataaatagaaaaacaatcttaaaattcatgtg<br>gaagtgcaaaagaccctgaattaccaaataaattttgagcaaaagcaacaaagctgcaagcattacactacctgacttcaaaatatactataaagctata<br>gtaaccaaaacagcatggtacttatagaaaaacagaccaatggaacaaaatagaaagcccagaaagaaatccatgcacttttaaccaactgttttttgcc<br>aaaggt	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:PPP2R2B:NM:181677:3/11	
0	chr5	18605922	18605923	1001536	0	-	pAlu5-18569744;1104685545587; RIP_Alu_chr5_018_02	NA;NA	NA;NA	SINE	Alu	Yb10	ttcttggtgcttttgtcaaaaataagttggcgatagacaggtggattaatttctgagctctctattctgttctgttggtctatgtgtctgtttttatgca<br>agcactgtggtgttctggttactaaagctttgtggtgtatttagaggtatggtagtgtaatacctccagcttttttcttttagcttaggattgaagctaa<br>gaaaaaatacgttaaaaccaaataaatctcagcaaactaattctctggcattatttaattcttcttaaaactgctcatttgcatattcctccccaaaaag<br>atatgcccaaaggacacaattgtttaccaacttgatgtggattccacattatcacttttctctctttctgcggaggtttttcatatcaatt<font color="green"><u>AATAGTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AATAGTTTC</u></font>acatggaaggggaaaaaattaaaaatattcatattctattagcattcactgaatggttagaatggtattagtccgttctcacact<br>tctatgaagagatacctgagactgggtaattcataaagaaaagaggtttaattgacccacagttcctcatgactggggaggcctcaggaaacttaaaatc<br>atggaggaaggcacctcttcacagggtgacaggagaaagaatgagagatgagagaaggggaaagccctttacaaaaccatcgtatctcatgagaactcac<br>tattatgagaacagcacgagggtaactgcccccatgattccattatttcccactgggttcttcccatgacacatggggaatatgggaaatataattcaag<br>atgaga	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr5	86408452	86408453	1001537	0	+	pAlu5-86411408;1104685646902; RIP_Alu_chr5_086_01	NA;NA	NA;NA	SINE	Alu	Ya5a2	aacgcatttatttaggaatgctttccaggaaaaggcatttttgtcataggagaaaaatctatgggtcataacataggacatgacagtttcatgcgggcta<br>ttgcccctgaaggccttccaggaccttctacatgaaggggttattgcccccggaaggccttcaggggcaatatgttccaggacaacatgaaggtcccgga<br>aggccttcaggggcaatatgtcccaggacaacaggtagaagtggtaaacagtggtattttccaccagcataggcccaggccaagatgtgtgtttgtgtct<br>acatttttagcaaaatagttttaaaataaaagaaaattaaaaatagaaaaggtacgtggaatagggatgtcaagatacaaaggatata<font color="green"><u>AAGAAAATATTT<br></u></font><font color="red">CCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAA<br>AATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTG<br>CAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAGAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAATATTT</u></font>tt<br>ctacagctgcacaatgtatttgtgtttaagtgttattatgaaatagtcaaaaggtttaaaaccatttaaaagtttataaactaaaaaagttacagtaagc<br>taaggttattaaagaaagaaaactttttaaataaatttagagttacctaaacgtacattgtttataaagtttacagtagcgtacaataatgtcctaggcc<br>ttcacattcactcactcactcacaccattcactcactactcactcagggagtgactcatccagagcaacttgcagtcctgcaagctctgttcatggtaag<br>tgccctaaacaggtggaccactttaaaaaccttttgtatcatatttttactatgccttttctatgtttagatacacaaatactatt	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr5	6337536	6337537	1001538	0	-	pAlu5-6317258; RIP_Alu_chr5_006_02	NA	NA	SINE	Alu	Ya5	tatgcagaatgagcaaagacttggaaccaacccaaatgtctatcaataatagagtggataaagaaaatgtggcacatatacaccatggagtactatgcag<br>ccataaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccaccattctcagcaaactatcacaagaacagaaaaccaaacactg<br>catgttctcactcataagtgggggttgaaaaattcttatataacactttaatacctttcattcatgtaagtttatttgatcctcacaaccttattatgtg<br>agctagtcagttattcttagtcccatttaagaaatttagcaaccaaacttcagaaaggttaagtggttttctgtttgtttcctt<font color="green"><u>AAAAACGTTTGAATAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGACGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACGTTTGAATAC</u></font>ataatttcaaccttgtcttctgttttaatattaagttatagttatttaaaatctgtgtcaaacatctg<br>tgcctccttgagtttctttctatgtatgtttctgttggtcttcttttgtgagcttttatttaagtgtttttctgttttaaattgtatccggatatggtat<br>tgccaatttgtatggaagaatattattgcttttctccagtgtagatttacacctattttgcaagatgcctggctacacaaacaatgtgagattacttctg<br>tctaatttcaaggcttcagatcattttaaattgaactgaaatactgtgagattctacgttatattgactcttatttttagggtgcagcttttgggattca<br>aatccaagagaaagac	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	16769627	16769628	1001539	0	+	pAlu5-16749365;1104685152404; RIP_Alu_chr5_016_01	NA;NA	NA;NA	SINE	Alu	Yg6	tggatggaagagaaagtttgcatcctggagacaggacgaaatctatgtagttttaatgtatactttggataatttaatcctaccaaaaataagtagaaat<br>acttatttccacacaatctgaaaaatactatttcagaatgcctagatgattaataatgattaataacagggcacactaaaccctctacaaaaatcactta<br>caggcaatccttacctcctgcagcttatttagataaaggacaacagaggtgctgacaaacagggacaccaagagcagggagggtgcttcccaatgaagac<br>agaaatgcatttatttatgtatcaatgaatccaattgccctgaacattaccgagccttccataatttcatgaacagtgcatgacaat<font color="green"><u>AAGAAGTATGACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACAAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>AAGTATGACAG</u></font>gtggatttggaaacagccatttgcctatggtaaggggacattcaatctgtgcttatttaatgaaagaaaatacagtgagtttattatcc<br>atggaccattaaagttataatgtttttcagcatttgagaaactcgcaaaaaccaaccaaggcatcctgagaagagcccaggaagacgtggctgggggtgg<br>taggaatccagcttgtcacacaggagccatgggtttttccagagccggccaagattttagggaaaagccattttgtagataacgagactggaaattagga<br>aggcaaaatgacttgttcaaaccggttattttttttatttttttgagatgaagtctcactcttgtcacccaggctggagtgcagtggtgtgatcttgg	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:MYO10:NM:012334:19/41	
0	chr5	4048200	4048201	1001540	0	+	pAlu5-4027937;1104685056779; RIP_Alu_chr5_004_01	NA;NA	NA;NA	SINE	Alu	Ya5	actagtaacattttgccaactcaaacatcaaacccagacttgcttctttcacaaaagccactagaacttcctcaggaaatagttctcatagaagactcat<br>tgtgcaatgagctatggaaaactcctcagtcttgcaagcagaaagagtcctttggttttgtggggacaaggatgaggctgattgcaggacaaaagcaaaa<br>gagagaaagaagcaaggtagtaactgctcacctgcagccctcagcctgcctgggcaccttccctccagagttcatgaactccaccagctgcaggcaagga<br>tcaggctgaccctggatgtatgtgcccagcaatggcttttccacttataaaactccagccaggtcatgagtgccgcctcacct<font color="green"><u>AGAAAACGACAGAAATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGCCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATAGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AGAAAACGACAGAAATC</u></font>cactgcacacatggttccagaaaacaacagaaatccactgcacacacggtcccagaagtgtgggttgagggtgggt<br>ttgtaatgagctctttgtttcctgtgggtcaccctgccaggcccggtcaggatggggtctttcaccttcagctcaaccttggaccttcatccggctcctt<br>ggtgtccccttccccagggaagtgcctggctgaccacgtgccctcggatgaggcccacaggtttgttatggacccattctattctaaccacatcagcagc<br>aaccgagccttagcaatctcatttccaatttgggatgacagagagatctaagttcttgagcagcatggaatcagccagggacactgacctacacacgttt<br>atcagca	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr6	32578047	32616602	1001541	0	-	pAlu6-32517693; RIP_Alu_chr6_032_03	NA	NA	SINE	Alu	Sg	ccccaatttgatatccagctttaacacaatttctctctaattccagcaagatttgtaatagttgtagacaaagttattctaaaacgtataggagaagcag<br>gggaactagtataggtaaaacaaatttcataggaaaaaagagatggagaaataactgtaaccaaatttcagaagttttatagctatagtaatcaatactg<br>attgacattagtgcagggatagacatagattagtggagcagtataaagaatccagaaatacacctatgccaactcattttgacagagatacaaaataatt<br>caatggaggtaatatagtctacagtcttttcaaacaatgatccaggagaaagtggaaatccatagacaaaaacaaaaccaagcaaaaacaaatag<font color="green"><u>AAGCA<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACGACGAGGTCAGGAGTTCGAGATCAGTCTGACCAACA<br>TGGTGAAACCCCCATCTCTACTAAAAATACAAAAAAATTAGCCAGGCGTGGTGGCACGCCTATAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCG<br>CTTGACCCCAGGAGGTGGAGGTTGCAGTGAGCCACGATCATGCCACTGCATTCCAGTCTGGGCGACAGAGCAAGACTGTCTCAAAAAAAAAAAAAAAAAA<br>GGAAGCAAAGGGAAAAAG</font><font color="green"><u>AAGCA</u></font>aaaaagaaacaacaaattctcacaccttatgaaaacatttaccccaattaaatcatgtctacatgtaaaacatttag<br>aagaaaacatatgagaaaatcctcaggagctagggcccagtgtctgagttttgagttcttagacatgacaccaaaagcactatgtgtaaaaaacaaaaaa<br>caaacaaaatcaataaatagggctttatcaaaatttaaaacttttgttctgtaaggtatcctgctaagaaatgaaaagtaaactagagatatggagaaaa<br>tatttaaaaccacatatattaccaagaataaattatctagaatctataatcaactataaaagctctactataaaatctatagtagactgcagactataaa<br>atttaattacataatggg	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	170342694	170342695	1001542	0	-	pAlu6-170176227;1104685292281; RIP_Alu_chr6_170_02	TGCCAGTGACAATGGGACGTTTGAC;NA	GTTGTAATTCTAACGCCTCTC;NA	SINE	Alu	Yc1	agatgtctgaagaaagggagctggtggctgggttctctgggctcttggctccacacttcacctgagttctctttgtttctccagaagctgatggaactgc<br>cgccatttcccaaagtaaaggaggtgagctctggggtgggtgaggtttcatcggtagcccggcctccgtggatcgctgcatgagccgggaaggtaagccg<br>agcggtaggacgtccgacggtgagtgaagatgctggttctgtgaagggaacggtgggcacctttaatctcagtgtccgagtcctgcctgccagtgacaat<br>gggacgtttgacaaggtctcttagactttatggaagcatcatgtgatcagaattctgtgtgaggggacgggcatccctggcttaa<font color="green"><u>GAATATTTTATTGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAGG</font><font color="green"><u>GAATATTTTATTGTTG</u></font>gatgcaaatgaaagaacaaagagaggcgttagaattacaacattttctagaaaacggtaccc<br>gattctgccagcacttactgagcactgggcggcctctaagcatgggcgataccgcagggactgaagcctgagggcacacacggacagagtctgtgtgtgt<br>ggcgtctgcacagcgtgctgtggagcacaggaggaggatggggggctggcaaagcgttccctggggcgatgctcaggtgagcagctggtgcctccattga<br>aggggtgattcacttttttccccttgcttgccagaagtcgagtaataataattatattttctaaacttctgaaaagttgcagacacatcataaacatcct<br>tagatacacaaggattattggga	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;NA	491;NA	169;NA	NA;NA	intergenic
0	chr6	133201814	133201815	1001543	0	-	pAlu6-133095237; RIP_Alu_chr6_133_02	NA	NA	SINE	Alu	Ya4	aaggtgtttgaattcccaccaattaacttttagcaaggtaaacagatgctaaacatatatctttaataggcccaataaatactattatcaattaatagaa<br>cccaatcaaaacaacagtaagcaaaacattacactgagaacaaaagtgctaatttactgatatgctagtttaggtcagtgctcattttccagtgtattaa<br>tttttttcatttattcattcaactaatgcttgcattttcaatatgcaaagccctttgctaggtacaacactaagttaagacattacaataatttcttctt<br>tatgttcgatccatgagcattgtgcatacttgcaaatacaactgcaagattaatgcacacttatttaaaaaactatgccatggttt<font color="green"><u>AAAGACTGTATTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAGACTGTATTGA</u></font>tttcctgagtaaccagcccgctctcttcatcatagatgaatgctaacttttctcccaaaagttcctctaccattgcagagttggta<br>tataaattgcttcccaaatgttgcgatatcgcaggtttatttttttttccttctgtttattttgggtttctctggctatctaagtgtcctctcatttatc<br>ctacacagatgacttcctctttcgagctctttcttgatacaggtgaaccagtggtggcccatttgtcaatcctattttacaaataaatatcatgcaataa<br>tcacagcacttgctaaataaatgtaacaatgaaagagattttgggtctggagggtgtactgccaaggaaatagaaaaagtgagttattatcatcaccttt<br>	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	120609962	120609963	1001544	0	-	pAlu6-120503383;1104685230552; RIP_Alu_chr6_120_02	GAAGCCACTTAGGCCATTATC;NA	ATGATATTGGCCATACCATC;NA	SINE	Alu	Yb7	aaacacagcctcatccaagaaaatttatgagcttaatacatataattggagttaggtaggttatccagagatctctacaaatcaagctatcaggaattct<br>ttagttagccatggcaatcatttggaagaaggctatttacaagtattgcttggtcatagaatatgtacattagacattttttttttttttgctggccact<br>tccaaattccctcactctccccattgagattgtaatcaaccaaattttgtaagttactatttcctactaacaatttaagatatatggcaggaggtgagta<br>gtatgagataaggtccaagaggaaacatagccagaataatatgaagccacttaggccattatcaagacaatgacatttactttg<font color="green"><u>AAAGAAATTGAGAGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAGAAATTGAGAGTC</u></font>aatacaggggctttactgaagagtgacatgatgtgatttatttatttaaagcagcatattggccaccgtgttaagagtaga<br>tgtcaggttgatatcacttttcttcctacttcacaaagtgagactagtcaactaattcaataatccagataatgacttgaattgacatgatagcatggta<br>gatattgagaagtgatagaactttgaatatattttgatggtatggccaatatcattaattaatgattaattaattaatggattagctctatggtgtatga<br>atgagatctgtattttgagaaaaacagagtcaatgaagcccatgagtattttgtgctaagaagacagaacgatggagtggccatcaattgctgaggaagg<br>ttg	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;NA	614;NA	311;NA	NA;NA	intergenic
0	chr6	104879358	104879359	1001545	0	+	pAlu6-104772799;1104685081877; RIP_Alu_chr6_104_01	TATCATCCTACGCCAATGAAAGATC;NA	GAAACATGTTCATTATCCGC;NA	SINE	Alu	Ya5	caaatcaaacaccctgcctatacatatactgtcttctggattttctaactgatgagccagtagctgaaactgacatacagatcttacagtgtagatatct<br>gtattacgcaatgaaggacagaggtagagagaagtggggaaaacaaaaaaagcatcagagagacctgtattcctgacatcacaaacctcaagtcctcagg<br>tggaggttataaaggcaggacccaaatgcctgtcagctgcaacacatacagcaacccaactgtgcaggctggaaaacagcagtgtcacagtagacactgc<br>agtgagaggcagcccagtagagcacactgcaccagaccagcggctctcagcaggtctctgagtagcatggaatatcatcctacgccaat<font color="green"><u>GAAAGATCATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>GAAA</font><font color="green"><u>GAAAGATCATGG</u></font>gacattggctttgtggttgtagtgaggggatgccatactaggaggcagataacagtttatgcgacaaggaaagcagtgagaacc<br>gcatgattttcagtggatgccagcacggaggactggccatgctcctggcccaaatatatgaatgtccatgtcagagacaccacatgcacaaataccagaa<br>ccagatatcctccctgccatccagaggctgtttctacatccagaactaattccagggagaaagaagggagacgaaattctgaattaatatgcggataatg<br>aacatgtttctttttggccatcaggcaaaatagaggtacaaaatagagaatacagttgttataaatgaataaagtttcagcaggtacctttgagtacatg<br>acctg	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;NA	637;NA	333;NA	NA;NA	intergenic
0	chr6	97124403	97124404	1001546	0	-	pAlu6-97017829; RIP_Alu_chr6_097_01	NA	NA	SINE	Alu	Yb7	taagcaaaaactgaaggaatttgtcaccactcacctggccttaccagaaatgcttaagtgattttcacttacatctggaagtgaaaatcactgtcatgaa<br>aacacaccaaaagtataaagctcattggtagagcagatatatgaggagaaagagaaaagaatcaaaccttgtcactacagaaaaccaccaaaccacaatg<br>attaactataagagaaaaagaaaggaacaaaagatatacaagacaacaggaaaacaacaaaatggtggatgttaagtcctcacttatcaataataacctt<br>ggctgtaaacagactaaattcccaactgaaaagatatagactagctgaatgaattaaaaaaaaaaaagacctaagtatatgctgcctaa<font color="green"><u>AAGAAACTCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAAACTCAC</u></font>ttcacctaaaaagacacatatagaataaaaataagggatggaaaaaaaatccatacaaatggaaaccaaaagcaaggg<br>agaatagctatacttatatcaggtaaagcagactttaaacaaaaagagacaaggttattttcacttcagcaagaagatgtaacaattgtaaacatacaca<br>catccaataccacaacatccagatttataaagcaaataattaaacccaaaggagaaatagatttcagtacaattatagctggggacttcaacacccctca<br>gcattggacagatcattcaggcagaaaattaacaaagaaacatttaatttaaactgcactttagaccaaatgaacctaccagacatttacagaacatttc<br>attcaacagct	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FHL5:NM:020482:2/7	
0	chr6	74398470	74398471	1001547	0	+	pAlu6-74291907; RIP_Alu_chr6_074_03	NA	NA	SINE	Alu	Yb7	ctttggccaaaaggcactgacacaaggaagcttttcctgtctgccccaggctggctgaggactgccaccttctctgttccaaagatgtcctgtaccttac<br>agcactgcattatgcaggctatattgtattgaaattctgtccatccatgtctgtctccctctggagaccttgggccccacaggaaccatgttttattttt<br>ttcctcttattcatttttaagtcctcagctgacaaagaacctaggtcatagtaaagtttcaaaaaaaaatgtttaaagaatgaatgagtagatgctgcac<br>atttcttgggtccaagatttaaagatgcagcttcacgtaacacatcattttacaacactgtcaactataacgtcatgtgcttt<font color="green"><u>AAGAATGCAGTCTGGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCTTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGCAGTCTGGTTG</u></font>gtacaaggtgactcatgcctgtaatcccagcattttgggagtcttaggcaggaagactcctt<br>aagcccagcagtttgagaccagcttgatcatcatagcgagactccgtctctacaaaaaataattagctaggcatggtggtgtgcacctgtagtcccagct<br>actcgagaggctgaggtgggaagactgcttgaacctgtagggttgaggctgcactgagctgtgatggtgccactgtactccagcctgggcactgagctag<br>actcaaaaaaaaaaaaaaaaaaaaaaggaatgcaatctgggcttctcctcctaactctcttgcctctgaatattcctttttccgaagtgtgtcgagaaac<br>aacctaagtttggagagatta	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SLC17A5:NM:012434:6/11	
0	chr6	68370790	68370791	1001548	0	-	pAlu6-68264208;1104685199362; RIP_Alu_chr6_068_02	NA;NA	NA;NA	SINE	Alu	Ya5	agccccaaagaaatgctctgttttaagtactagaggcttttgagacaagattcagtttgcaacaatttacctgtttaattttttgcctggtggagtggag<br>aaaagatataactaactatctttgtacaatttaaaggggaaaaaagtcccattacattattttaatgagataatcttgaataagcccctcctaccagttg<br>agaatcactgaccgaatagataaaaattaaggtcattttttagatctcatgatttaattttattagagcaaataagacaggacagcactttttcttagtg<br>aaagttagtacagaaattcaaaatagaaatatataaacactttcttatctattttagattgataaatgtgtatttaaactt<font color="green"><u>AAATGTATATACCAAATCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGTCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAATGTATATACCAAATCA</u></font>aattctagaagtcagttccataaaaaaacaaaataaatatgcatgcataaaattgcacagcttgctaaattatccctatt<br>taatatcttccacttatgtctgaacaaccaactcataagctatattttcagtagcttttgaagtttaattgaacataagatctaaacacattttaagctt<br>ttttattgtttaagaataagttctatatggcttgacaggattaaaacaataaactccaatcattctctgaaccagtttggttcagagaatgggtaatttc<br>tgattgagtttcctttagatgatcaacataatctttcataaatgtcatatgatgaattgttaataaaaaagttacaatgttaacacaattctagaaagaa<br>t	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr6	91182587	91182588	1001549	0	-	pAlu6-91076011; RIP_Alu_chr6_091_02	NA	NA	SINE	Alu	Yb7	caagtgttcctaagatagacatgtaaccagcaaagcatcactgcccagagtgcttgaagagctcctacaaataaataggataaagtaaaccccaaagaga<br>aaccaagcaaataattcacagaagatgaaaacctgaatggctaaaaaacatttaaagagatgctcaccttcaatactaatcacagaaatgcaaagtaaaa<br>cagtggcaaaatgttcatcatacattactaagtattgggaaggttgtgagggaattagaattctcattcagtcctgatagaagggtaaccattttggaga<br>gcaatttagtagcacccagaaagttgaagtttgtacaccatacacagattagaaatactaagatacaagtgcacaagaataactacac<font color="green"><u>AATAATATTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTCGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAATA<br>AAAAATAAAATAAATAATAATAATAATAATAATAAT</font><font color="green"><u>AATAATATTTTAG</u></font>gacatattgtcatagaaaaatagtgaagcaacctaaatattcatcaactgg<br>ggattgaaacataattatgatacattcctagatggaaactatgtagtggtttacatgtgaatgagctagttctacaagcatcaaaataggataagtcttg<br>gaaacacaatattgaataaaaacagcaaaatactatttatttaaacattttaactaccccaaacagcactacaggcaatattgtttgtggatccatacat<br>ataccataaaattcaaaggcatgaaaaagaaataagaaccaacttcaagagaatagttagctctggggtggaacaaagagaagattccaattctatctgt<br>aattttttcatacctttaaaaaatcctacagggcatg	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	163110370	163110371	1001550	0	+	pAlu6-163023807;1104685087549; RIP_Alu_chr6_163_04	GGACAGACTAAACTTGTAATCTGC;NA	AGCTAAGGTAAAGATCGCTGCTCAC;NA	SINE	Alu	Yb7	ttgtatagcactctgtgcttaaccctgttgattaacttcctgtgtcttacaattgcccatttttctgtcttaatccaactctatattgcaaactgagggc<br>tcccttttcccaccatggtaaatgtggaggcagcttcctggaagaggccttgaggtcacatcacaaacagtaaaacagcatatgggggagaatctcctcg<br>gaagaggacagactaaacttgtaatctgcacaccttttatttaaaccctctcagtatattaaagtcctccaagaaagacagttgtcatagggagtggtct<br>agacatagccaacttttcctccatgaaaagaataagcctttattttgttcagccactgggagtttcgaggtggttttttactgctct<font color="green"><u>AAAACCTAACTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCTGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAACCTAACTTA</u></font>tcctaataccggggacaaacgttatttactctggtgacaaacattatttctattttacaagtgaggataaactgttagggag<br>gttaaattacttgttcaaagctcatacgtgttgtagcaaggactaagtagtcttaggcatagggctcagctttttaaacctaccttgatggtttttgtgc<br>ctcgtctatagggatagtattttctactccaaagtatatgccatgatgatccagaggatattgatcatgcactggtaagaagaatgtctctgtataaaca<br>aatgttggtataatataaacattgataaattgtgagcagcgatctttaccttagctctgaatgtctaaatttcacttggaatttttcagtagatttatat<br>gaact	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;NA	853;NA	547;NA	NA;NA	intron:PACRG:NM:001080378:2/6
0	chr6	131217170	131217171	1001551	0	+	pAlu6-131110606;1104685228287; RIP_Alu_chr6_131_01	CTCAAACTTCGTTTCTCAAG;NA	TTGGTGACACTCTAAGCGTTACCAG;NA	SINE	Alu	Yb7	cttcccagatctgacagtcaccagcaaaggaaattttttaagagtgagctgcagccagtggggggtggagatgccaaaatgactttgagacactgaggtc<br>attcctagtcatccttcagattttaaactcaaacttcgtttctcaagtaaactggtttctaaaggaaattggttaaatttatgatagttcaagtctccta<br>ttttgttctctcatagcattttatttccttcagagggctgatcacatttacattttgttcatttgttaatattcacacctaccttcctggagcacatcct<br>ctctgccaaggagggggaccatgtttgctttgtctatcacggaatcctcaatacccagccctaccctagcacatttaggcactcatt<font color="green"><u>AAATACTTTTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAATACTTTTTGA</u></font>atgcatgaatgaatctttccaaatttatctagtttgttcaccttatatgtaagtttatactttaacttcctaaatctgtttaa<br>caaggcttctcataaaagttagcctctgagatgggcaaacttcaaaagttgtgtgtgtgtctgtgtgtgtccattgtaaaaatgaacataaggtgctagg<br>aataagtgatacaatgaattcatttaaaaacttattaaaatgccacaagtgaaggtggagctactggtaacgcttagagtgtcaccaattttttgctagt<br>attcctgattaagaagcaactgattcataaaatttagagaaaaaaacatccagtgctattaccttatgtttgtataacactcacttttctcattcattat<br>ctta	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;NA	857;NA	553;NA	NA;NA	intron:EPB41L2:NM:001135554:14/15
0	chr6	78420991	78420992	1001552	0	+	pAlu6-78314427;1104685406879; RIP_Alu_chr6_078_01	NA;NA	NA;NA	SINE	Alu	Yd2	gggccagttttccaatctctgatttacagcatctctgagatttcttactgaacagggagtgttatagataggaatgattgatggctaaaagctccataaa<br>ggcagagatagacttgttttgttgactgttatatccctgtgtctaccacagtgcctgacaggttggggataattaaatatatctgttgaataaaagagta<br>aggaatggaatatttgatggaaaattacctaagttaggttaaatggttctatattcagattttcaggttctctgacatgcactgtatggtactgccattt<br>tggttagagcaaattcagtagaccttccttatctgtgggttctttatccatagattcaaaccaaccacagattgaatatgtttaaaa<font color="green"><u>AATTGAAAACAAT<br></u></font><font color="red">GGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATTCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCGTCTCTA<br>CTAAAAATGCAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGA<br>CGTTGCAGTGAGCCGAGATCCCGCCACTGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATT<br>GAAAACAAT</u></font>aatacaacactaaaaaaaaaatgaataaaagtactactactgtttattttttatgttcattattataacccttgcattttggaaatacagc<br>aagatatattgaaatgcaatattttttcgttgataatcaaattgaatttagatgcatctggttgatggaatattgtatatacaacttctctctgctgtcc<br>ttgtcctttacattgggattttgtagaatgagtcaaattcacattttaatcctctgttcttcagacagtaagtttttgagtaccttaccatctctatgtg<br>tttaaaacagggtggctagaaaagaagctctttttctttttatttttttgttttgttttagtttttatttttattttttattatattttaagttct	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr6	161126180	161126181	1001553	0	+	pAlu6-153704791; RIP_Alu_chr6_153_01	NA	NA	SINE	Alu	Sx	aactttggaaggtgtcatccccagaccaacaccatagctttttagttttttaattttttattttttaaaaaagagaccagtcttacaggcagagaggttt<br>tggttgatctggtaaatggatggatcccactgccatatgttcactgttgcaggttttttttttttttttttttttataccataaagtgggtcctttaggt<br>ttaggcactattctatgggatttcatattcataaatcagatcctctatgagcccttgaatagtgcactgtctcgaaagttgcaggcttggaaattattcc<br>atacatgaagtaggtatcaatttctataagaaggaattattgctgtatgtatcaaaaacatttctaccatcaagacgatgaatgttaaaaa<font color="green"><u>TAACAATGA<br></u></font><font color="red">GGCTGGGCACCATGGCTCATGCCTGTAATCCCAGCATGTTGGGAGGCCAACGCAGGCAGATCACTTGAAGTCAGGAGTTTGAGACCATCCTGGCTAACAT<br>GGTGAAACCCCATCTCTACTAAAAATCCAAAAAATTAGCTGGGCATGGTGGCGCATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGC<br>TTGAACCTGGGAGGCGGAGATTGCAGTGAGCTGAGGTCACGCTGTTGCACTCCAACCTGGGCGACAGGGCAAGACTTCATCTCAAAAAAATAAAATAAAG<br></font><font color="green"><u>TAACAATGAG</u></font>gatctattatgtattgtaaacatttctttcttttgctcatgaacacttctttaaaatccactgacagagcattaacatgaatactaaaat<br>tcatgtttggattattgaaaccaacaaaacatctcactggtaaattaactgatgtacaaaatcattctgactgtgtcaaccatggaactttaaaacgtct<br>taacacataaaaagatatgttacttttatactttatactttattatgaatatttaaaagccatatacagaaagaaacacatgcatatgtaatcatacata<br>gaaagacttgacagcacacatgtccactgcgggtttcttatgaaaaatgccaccttggctaaatgtcaatgcatttatatatcaagtgattttgtaagca<br>a	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	83331466	83331467	1001554	0	+	pAlu6-83224902; RIP_Alu_chr6_083_01	NA	NA	SINE	Alu	Yd3a1	cagacttctgtctagaaactgacaagcagattctaaaatacacatgttattgtaagggactcaaaatagccaaaatagtcttgataaaagaaaacatatt<br>agtataattcacacccccgtgctccaaaccttacggcaaagcatcagtaatcaagacaacacaatactgatgaaggtaaaatatatagattgatggaaga<br>gaattgagagtccatatataaaactatgtatctatagtcaatggattgttaaagtggtgccatgtgcaattcaatgaggaagagacagtctttgaacaca<br>ctggatcaacaacgtacacgtgggtcgccacttgcaaaatagtaaattggaacccttaccccaaagcatacaaaaatattaactca<font color="green"><u>AATGAATTAAAGAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAAGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTATTAAAAATAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGAGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA<br>GGCGGAGCTTGCAGTGAGCCGAGACTGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATGAATTAAAG<br>AC</u></font>atacatgcaagagctaggataaaccatatgcgaaaatcttcaggattttggatctagcaaagaaatagctgtaacaccaaaaacatgagcaacaaaat<br>aaaaattagatatttaaaatttcttaaaaattaaagacattggtgtttcaaaggacagccaagcaagtcaaaaagcagctcaaaaattatgataaaatat<br>ttgagaaacaaatatctatatgtctgcatatatatgtatcttgaatatagaaaaattgttttaactcagtaacaaaaatcccaactcaaaactgataaat<br>gataggaatagatgtgtatcccaagaagatacacgaatggtcaataatcccataaaaagatactcaacagcatcactcatcaggcaac	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	13629245	13629246	1001555	0	+	pAlu6-13583805;1104685173713; RIP_Alu_chr6_013_01	NA;NA	NA;NA	SINE	Alu	Yb7	tcatcagggaaatggtaacatcacctattggatactagatgatagtaaggaatcattaattttttgtagatctaacaaagatgtggttgctttcttaaaa<br>ttccttatctcttagagatacatacagaagtatttacctttgaaattatataaagcctgggatttgttttaaaatgacatattagcggtaggagtagagg<br>ttggaaaggagatatagatgaaactagatcatccatctatcaataactattgaaggccaggcactgtggcttacatctctaatcctatcactttgggagg<br>ccgaggtgggaggatcacttgagcccaggagttcgagaccagcctggtcaacaaagtgatatccaatctctaaaaaatatatatataaaa<font color="green"><u>AATTAGCTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTGCTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATTAGCTGGG</u></font>gcatggtggctcacacctgtagtcccagctacttgggaggctgagctgggaggattgcttgagcc<br>ctgggaagtcaaggctgcagtgagctgtgattgcaccactgcactctagcctgggcaacagaatgagaacctgtctcaaaaaaacaaaacaaaacaaaac<br>aaaaaaaaacaatgaatttctatgtgcaccagaagactaaggccacctttccttgcctaacacagccatggcttatggtcccaagaagcatctaaagcag<br>gtagcagctccaaagcattggatgctggataaattgaccagtgtgtttgctcttcgtccatccaccagtccccacaagttgagagagtgtctccccctca<br>tcactttcctaaggaacagacttaa	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr6	13826457	13826458	1001556	0	-	pAlu6-13781007; RIP_Alu_chr6_013_02	NA	NA	SINE	Alu	Yd8	ttcagtatacaggagacgatgtaagttacaggcaaattcattttattatccaaatttttatataacatcatgttatataagagacttgggcctctgtgga<br>ttttgttttccacagttcttgaaaccaatgccctatggatggatacggaggcgacaactgttaatcatctcaccactctgcattagtccagtctcacatt<br>gctaataaagacatttctgagactgggtaatttataaacgaaagaggtttgactcacagttcagcatggctgaggcggcctcaggaaacttacaaccacg<br>gtggaaacggacacaagcacatccttcctcacaagacagcagcaaagaaaagtgcagaaaaaaaacaggcagataaagaccgttgtaaaa<font color="green"><u>CCACCAGATC<br></u></font><font color="red">AGGCCGGGCGCGGTCGTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTTGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG<br>TGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAC</font><font color="green"><u>CCACCA<br>GATC</u></font>tggtgagacctcactatcatgagaacagcatgaaggtaggtaaccccatgactcaattacctcccactgggtctctcccacgacacatggggatca<br>tcacaactgtaattcaagatgagatttgggtggggacaccaccaaactgtccaaaactggtgggttcttgttcccactgacttcaagaaaaaccacagac<br>cctcctggtgactgttaagtttttaaaggtggtgtgtgtctggagtttcttgcttctgatggtcagacatatgcagtctctcctttactggtgggtttgt<br>ggtctcactggcttcaggagtgaagctgcagactttcgtgacaagcgttatagcttttagaggtggcgcattgaattattccttcttctcctcc	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	20995894	20995895	1001557	0	-	pAlu6-20950446;1104685176015; RIP_Alu_chr6_020_02	NA;NA	NA;NA	SINE	Alu	Ya5	cgggtgcagcaaaccaacatggcacacgtatacatgagtaacaaacctgcacattgtgcacatgtaccctagaacttaaagtataatttaaaaaaaaaga<br>aattatgttccaccaaaaaaaattttttttttaaagattagccaggcatggtggtccacggctatttgggaggctgaggcaggaggatcacttgagctca<br>ggagttcaaggctgcagtgagctatgatcataccactctactctggcctgtgtgacagaaacagaccctgtctcttaaaacaacaactacaaaaaaagaa<br>aaaaaggaaagatcttaagcgagtgagttctgacaatcatctactgtgtagctcaaactactctaaagatataaaatactttcctctagaaa<font color="green"><u>GTAATCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTACAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCACAAAAAAAAAAAAAAAAA<br>AAAAAAGAAG</font><font color="green"><u>GTAATCCT</u></font>atgcacctcatcagacaatctctccctaccctcgtgcctacaagtattcagttttttttctaccacagattatttccagaga<br>ttcttgtgaatgaaatcatatcttgcactttttttgtgtaatgcttcttttactcagcataatattgttaaattcctgttattgcttaaattggtagttc<br>gttccttttagtcactaaataatagttcattttgtggataaattccattttgtccattcttctacagataaacacatgggctgtttctaatttttggtgg<br>ttacgactaaaatagctataaacatgcttatacaagcttttttgtgactaattttgacaaatttctcttagtaaatgagtagaattgctggattacagga<br>taagtgcatg	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:CDKAL1:NM:017774:9/16	
0	chr6	24086337	24086338	1001558	0	+	pAlu6-24040896;1104685177041; RIP_Alu_chr6_024_01	CTCTGTGAACCAAGTCCAGGGCATG;NA	ACAATTGCGAGAACATGCAGGCAGG;NA	SINE	Alu	Yb7	ctagggaatgctgacctgtctgaatgtctcttttctttctcttgatcatctatctttagactcaggaggaccaaaagtaactgaataaacattatcttgt<br>ccttggccttcaccaagcaaaattgtttatatctgagaccatttccctttagagtctgagatcattattttaaagtagattgtcaaatgctccacagttg<br>atctcagttcagctctgccatttgctgctctgtgaaccaagtccagggcatgacattaagactgtgactatataacatgagaaaaatgttttaagacaga<br>ataaaacatcacatacagtttctggcagtgaatcttaacaattgaaatatcgttgtccaaggaaacacttcaagatactgttacag<font color="green"><u>AAAAATGACAACCA<br></u></font><font color="red">GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAATGACAACCA</u></font>tgcctaccccataggcagttgtgagaatttaatgagatgatggatgtgaatgagcacagtgcaataacatgcacagatttt<br>caataaatggtttgaatcacaatgtaatgaaatgtatttaatccaattcagtatgtgcatttcaggaaatagtgtggctacctgcctgcatgttctcgca<br>attgtgcactgcctaatttttatctttctccatgtttatactccatcctacaatctgggtcagtcttatatataattaggaaaagaagatgcctgtataa<br>tgttgcctgatgcatacaaaacaaagtccccaattctgaaacctctcctttttaatgtgatgtagtaaaatttaaatgttagtatccacatcttaagaga<br>gcatt	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;NA	678;NA	371;NA	NA;NA	intergenic
0	chr6	19245086	19245087	1001559	0	-	pAlu6-19199633;1104685175519; RIP_Alu_chr6_019_01	NA;NA	NA;NA	SINE	Alu	Yb7	tatttatagatctaatgaatcaatgcatggtttcaatgacctaatgaatttcttatatccacaaataagacactctcttacttcaaaccatcaaatcagt<br>atttctcagaactgttttatacatttttattgaaacagattctccattagaaaaaagtgatgtcccctccctcagtgattttgagactcgcacttagctc<br>cacagtaaagaccttgtacacacagttgatttctctgtgtgtgcatgtgtgtatgcatgctgtctgtatgcaagtgtgtatacattttcaaaatataaac<br>tacaggcaaaaagtacaatgatcacagatgtacagtatggtaaatttttatatagtgagtatatccatgtaaccagcgctcaaataaa<font color="green"><u>GAAACAGAAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAG</font><font color="green"><u>GAAACAGAAACAG</u></font>gcacacagaaactccctcatactcccttgcagtcattaagtttccaaagacaaccatcatcttgacttctaatcata<br>ttaattatgtttttctgcttttaagctatatgtagatgaaatactaaaatatgtacatttttgtgcacggtccaacatttcatttacaagattcatccat<br>gttgttgtatgcagttgtagtttgttcatgttcattgatgtacagaatttcattgtatcaagattccatagttgctttgtccattctatagtggatgaac<br>gttttgattgtctccagtttggggctatatgggtaatgctgctatgaacatttatgttctttttgtgaacacattcatgtgtttcaatagggcatatatt<br>taagagtggaa	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr6	44003466	44003467	1001560	0	-	pAlu6-43896890;1104685507043; RIP_Alu_chr6_044_02	GAGTTCACCTTAGACTAAGAGAAGG;NA	AACCCAACTGCTGGCTATATGACC;NA	SINE	Alu	Ya5	agggcaaatctatatccttgtcctttctttgcagagataataaagttaatgggattatttcctgtgtacaagaatagggctgctaagaaaacattgtcaa<br>gtaaatgctgtttgcaaaggctaaactgaaaggccaaatcttccaccaggaggaagtaaagggtgtgtctacacgggctcacggggagcagtgccaccag<br>tgacttgatttgcctgagactgacttcccctctgcttcaccgggctctgattcatgcagatggctagagggcagggttgccaggcccatttccctggtct<br>ccaaggtaccaggtgagctggctagttggttagtctttggaaaaacagagttcaccttagactaagagaaggccccagctgaacttt<font color="green"><u>AAAGATTGTCTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCCGGGCGACAGAGAGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAGATTGTCTGG</u></font>ataactttcctccttgtaaatggagaaactgaggatgcggagggggagctggtctcaggtcacatgaccagttgtagcaaggc<br>ctggtggggaagtagagacacagagatggaaaataacttgcctgggtcatatagccagcagttgggttgtaggggggaagctgaggcccagagaggagaa<br>atggcttgccaggctcctacagcctcccagtggcaaagtttgggatggaaccaggtcttcaactcctaggagacagcttgctctgtcatcagcccaagct<br>cccatcctcccctactacagagacggctcagggaatcactcaggtgtattcctgtttgccgagtctcaatcatccctgactgtgtcgccacacctcgagc<br>ccag	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;NA	521;NA	217;NA	NA;NA	intron:LOC100132354:NR:024478:1/2
0	chr6	45368457	45368458	1001561	0	+	pAlu6-45261894;1104685506661; RIP_Alu_chr6_045_01	NA;NA	NA;NA	SINE	Alu	Ye5	gcataaatctcacaggacctataaaacaaaaatacaattttaaaaaacaaaaacaaaaatacaatttaaaaaacaaaaacaaaatctaatgtatacaggc<br>aacgaataccatggtgaataaaatggtacctcacatctcaatactaatattgaatgtaaatggcctaaatgttccacttagaagatacagaaatgcagaa<br>tggatacgtatccaccaaccaattatctgctgccttcaggagactcacctagctaacatataaagactcacacaaacttaaggcagaggggtggaaaaag<br>acattttatgcaaaaggacaccaaaagcaagcaggagtagctattcttataccagacaaaagaaactttaaagcaacagcagttaaaa<font color="green"><u>AAGACAAGGAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACAAGGAGGG</u></font>gacattatataatgataaaaggccttgtccaacaggaaaatatcacaatcctaaaaatacatgcacct<br>gacactggagttcccaaatttataaaacaattactaacagacctaagaaatgagatagacagcaacacaataatagtgggggacttcaatactccactga<br>cagcagtagataggtcattaagacagaaagtcaacaaagaaacaatggatttaaactataccttggaacaaatgaacttagcagatatatacagaacatt<br>ccatccaacaaccacagaatatacattctattcaacaaggtgtggaactttctccaagacagaccacacaatggggcacaaaatgagcctcaataaattt<br>aagaaaactgaaattatatc	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:SUPT3H:NM:181356:4/13	
0	chr6	52037632	52037633	1001562	0	+	pAlu6-51931068;1104685505154; RIP_Alu_chr6_052_02	NA;NA	NA;NA	SINE	Alu	Yb9	agcagacagatgcccacaagagagaaaaattcatatttaaatgcatcccattgtgccctactctccgaccttgtctaatgctgttgttttgagcatagca<br>gagcacactctaacgctcctgtcttcttagccagtggacgtgcaactgacccattgaatgaaggcgggcagtttgggggtttcttccagtagctataaca<br>atatcttgagggcagttatgctttctagaccatggtctcttctggacgccactggccatacagctggctggagctagaagtgcaatgtcactaagcacct<br>gaataaagctaagagccttcctgaaaggagagccttgacaatggtatcatggacccagggctcactgagtaagccagtcaaatagatg<font color="green"><u>AGAAAGAATTCA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGAAAGAATTCA</u></font>aacacttttatttctactcgccagcccatcatgattaaagatattcagagtttattgaacagccctggtggcttccttacct<br>ggctgaggggtggtgagcctcacatcttttcctggagcccgagtggtgcactcaatcttcctgggagacacgtgtctaatatcacatggaatgcctaaag<br>cgaattaaagaaatttatgtatgtgtgtgtgtgtaggtatacatatatatgtatatgtgtgtgggtatatgtataattatatatatatatatatatatat<br>atatatatatatagagagagagagagagagagagagagagacagagagagagagaggcagtcgggagatgtgatggcaagaccagactgaagtagacagg<br>ctccta	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:PKHD1:NM:170724:13/61	
0	chr7	45742353	45742656	1001563	0	-	pAlu7-45482912; RIP_Alu_chr7_045_01	NA	NA	SINE	Alu	Ya5	tcttgccgtttatttatgacagaacacacgcaggacttgaaagatgttactaataatgtccactacgagaactatggaatcagaaaactggcagctgtga<br>cttatcatggagttgataacaagaagaataaagggcagctcactaagtaagtatatatttttttctccaaaaaaaggtattctttctgtagtcagtaatc<br>atattgtttcattttcattaaatttctcctggctactcagtagaaaatttggataacattctctatgcataacagcataaatttatattgttatgctttg<br>ttaatagtagaagcttttttgaatgaaccattttgataagagttttcacttacagattgtgtggaaacaaaggacaggcttt<font color="green"><u>AAGAAAAGGAATATTTAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAAAAGGAATATTTAG</u></font>atgaatttattcttggttaccttctctattcctattccagggagtaaattagctggagtttcagtttcttcttttggt<br>tgttagactggtgtaagtgactacgaagtgtgtagctttgccctattgagcttatatctcaagctgtggtggtttcatgttggagtcaaaaaaagagatg<br>tgtgaggaagctggtaaccatgtctgtgccctacttttaaaaaatttgtcattattgaagatcacaattacatcatatgtcacttagcaatggggataca<br>ttctgggaaatgtgtcattgggctatttcatcattctgtaaacatgattgagtgtacctacataaacctagatggtagagccttctgcacacctaggtta<br>tgtg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SEPT13:NR:024271:9/13	
0	chr7	46068704	46068705	1001564	0	-	pAlu7-45808944;1104685593638; RIP_Alu_chr7_045_02	NA;NA	NA;NA	SINE	Alu	Ya5	atacataacttttacaatacaatggaacaactgcacatcaatttggcactttcaaatgcgaaaataagaaaataaacatttaggtagatgagtggccagt<br>tatcagaatcaaagatacatgaatgttcatgcatgctacattgaaacttcattgactcttggtttaataagaattcatgggaactattctggagaaaaac<br>tattgtctttacttgagaaaagattagaaacttttgaagtagaacttgaagcagatgttgttgtgtggtaagcagtgtctaagatagcttccagtgatcc<br>ccttcctttgagggtgggccagatttggtgacctgctttaaaccaatggcccatgtgatgagtggtcactcccaaaaagaggttat<font color="green"><u>AAAAAAACAGACTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AAAACCAGACTT</u></font>tcagttttgggttgtctttcttgctctctcttggatcactagctctggggaagccagctgccatgctgtgagggaatcctgtgcaaag<br>gcaccatgtgggtgaccctagaagcgcatcttctgaggctgccaacaagtacatgagtgagcttggaagcaggtcctctcccagttgagccttaagatgc<br>ctcccctcccacccagccaacaacttgactgcagccccttgacagacttgagccagaaccacttagaacacagaaactgtgagataattaaatttttttt<br>taactgttaggttttggagtaatttgttacacagtcatagcttactaacactgattaccagcacaatcacagacaaattcagaaagttatcactgatg	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr7	57790392	57790691	1001565	0	-	pAlu7-57526665; RIP_Alu_chr7_057_02	NA	NA	SINE	Alu	Yb7	ggcagatatagacttctcagggacacctgggcactgcccctgcctttacacatttgtcaggtatattggctcatgggttcattctctttatcagagaaag<br>attacaggtttctcgtatagacaccaaaagatcaggtgatatattattgaaagttcactgcctattatagtctgagtaatataaaaaaataatggcatat<br>ggatggtctgaaggcaatattagtttcttctactaggtagggaaggaggtgtctttctctttttgtgaatttgggcctttgttgtaaattgggagttgac<br>atatttctgaaacataagggaaaaccacatccaaccagaacctaaccttttaatccatccaagagtttacttaattcacccaatt<font color="green"><u>AAAATATGGATTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br></font><font color="green"><u>AAAATATGGATTCTC</u></font>tgcaatacctgttcataatctctttagtccatattttctccattatgtccaactcccaccattcagctgttgatttatggtgaga<br>gctatttttaagattgtagaattaattactgaaaataactctacagactcataaaattcatattcacctctgcattccagtgatcagaaaaaatatgggg<br>cgtatttccaaatataactccttcactgtctcttttcaaagggcataacagagtgacagaattgaaggaagagggcagataatttaaaaatattatatag<br>gggggcacctcttgaaaaggaagcctaatatcctacaggaaggctctggccctaggttttcatctgtaaatcatagttactctaactcttgtagttacta<br>	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	64290564	64290866	1001566	0	+	pAlu7-64051017; RIP_Alu_chr7_064_01	NA	NA	SINE	Alu	Yb7	ctgatactctagtaatccactaaaaagttgagggtgtcctgggctcccctgggagtgccgtgggcttgggctggacaggtcgtggggagaatgctgggta<br>ggtgggtgcagctgcagccacaggggagccagagtgtgcagcatgtgtccagcgtgagcctcccgagcttccacctgggtcacatagtctttgtgcccct<br>gggaagcctctagaagccacacagaggcccatagcaactctcatgccctggagtgtctcaccagccactccagtgatgggccctccagtggctctgggac<br>ccaaacagggatgattcacaaagtccctaccgagcacaggccttcacagttcaacaagaaaatcctactgttgactggattttt<font color="green"><u>AAAAATCAGTGGAGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAATCAGTGGAGGAG</u></font>gatcacactagaaatgatagatactgcaagaaacaaagcttgagtgaaagcttgttaccgtaatgaatggactcacacat<br>atcactgctttgcagtgatagcatcagccaaaagggctgcgaacatgaatcattaacaagttgaaatatgtcaaagatggctgtgtggtgtgaagaagct<br>gcatcagctgcacaggctaagcctaaatgatattccaaatggcagagtgtccacctgaataccatcactgtaatcagtaacaataaaagatagggaaaac<br>tgaattatttttaaggttgaaatgattttagcatgacagtttgttctcttgccaccgtacattgaatcatatacttgatgtttattgtgtgcctgtgatg<br>tgcc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:INTS4L1:NR:027393:9/14	
0	chr7	71722281	71722585	1001567	0	+	pAlu7-71482659; RIP_Alu_chr7_071_01	NA	NA	SINE	Alu	Yb7	ttgctgacgtcacagcccgaatttccaccacatttcatactaactccccctaaatttgcatatgcaaaccacgagcaaggatgatcaaacagacaactgc<br>gcatgtccgaggactttccagatctcccctttccttccaccaatcacttactaatctgagaatccatcccctaataaaatcactgccttaaaacctgcac<br>aggaagacaaatttgagctggacttagtgtctctttattagtcgacttgcaataaaaaagctttcttttcccccctcaaaaaccctatgtcaattagtat<br>tggcttccagagcatcaggcagtgagccccttttgctcagtaacagagcttaaggtgaataaaaaaggaaaataatgatatggttc<font color="green"><u>AAGAAATCATTACG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAAATCATTACG</u></font>aaagcatggctgaaaaactgctagccttaccaagtgcataaaaaacatgaaaattatttattgataagcattagtcataaa<br>agtgtactctatctcaatttaaatactgcttatgtgtggattacacaaacaaccatgtatgcagtagctacttcaaaggactttctttttaatatttaaa<br>aagttagttcactgaatcagagttgttagataagatcttgtcttcgtgagaacagcttttgaaaatattttaatattttattactcagcaaaaatagcca<br>tgaaacactgaggggagatttagtttgggaatggaatgagagaatgcctgctgcggttcattatcatgactccacccattccttacaactctatgatgct<br>ttatg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TYW1B:NM:001145441:10/12	
0	chr7	76314152	76314469	1001568	0	-	pAlu7-76074821; RIP_Alu_chr7_076_02	NA	NA	SINE	Alu	Ya5	cagaaacattaaaagtgaacttcgcaatttccttaaaaaatagttgagactgtggagaaacaaaaattagttggaacttagtgaactgaagaactgaact<br>tcagtgaactgaagaaacaaattccactctgggtagatcgacttcctaatgtcacaagtcaatttagaaattatgtacaagataaatctcttttctctca<br>ttgcaccaatgtatttatcttaatcacaagcatcagtggagacagagactgaaaaataaattgttcactgtctccaagacaaaccccaaataggaaactt<br>gatattctgccgaaagtctatctctggaatatgctttggaaaagccatggtataattatatgtagtattatagagattcttgtgtgtat<font color="green"><u>AAATATTTTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATATTTTCA</u></font>aaagcctttgaaattgtttgtaaatccaaagtttataaatgacttatgaaatccacaaatttgctaaatat<br>gtttctgcatttttgtattatgctctctgatttttctttctatgtggtgtaagtcaaagaaaatgatatacaatatggctagatgggactaaaatctcca<br>aacaaaagaagcatctgtttttctaatttagtttttgaatttatgttggtttcacaattggttacactgcaaacaatgtggttcaaatgacaatgacact<br>gattacaattctactttgcactaagagtgctttttattcaagattgtcaactcccataactaacaataactaagcctttcagcacctctgtaccttgggt<br>attgttttacccaatgtg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	98035734	98035735	1001569	0	-	pAlu7-97795382; RIP_Alu_chr7_097_01	NA	NA	SINE	Alu	Ya5	gcaaatatttcaaaaccttacactgcatcaagatgggacatttcttaaaaattgcttccccaggacaagaagtagtggcccacacctgtaatcccagcac<br>tttgggaggccaaggcaggaggattgcttgaagccaggggttcaagaccagcctgggcaacatagagagaccccatctctaaagaaacaaaaattagcca<br>agtgtggtgacacattacctgtaatcctagctactcaggaggctgaagtgggaggatcgcttgagcccaggagtttgaggctgcagtgattcctgatcat<br>gctactgcactccagcctgggcaacagagcaagaccctgtctcaaaaacaaaacaaacaaacaaaaagcttcctcagacaacatagaaaca<font color="green"><u>GAAAAATAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>GGAAACCCCGTCTCTACTTAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAGAGGCG</font><font color="green"><u>GAAAAATAAGG</u></font>gggcctctcactactcttttcagatgtatcttccagactgcggctcccattgtcaggggagtcattttgtttctgta<br>atgcatgtgtcatcttttacttctagatagcgttttggggtagggaaaggagttgggcagaaataaagatgtctaggcgccttttgttctgtgcagacac<br>atgcctgagaacttttcagtgccaaataaaaggagagtctttctggtcacaagaggagtctaataatttagttaagcctacaaagcaagttccttatccg<br>actgtcttttatgataattgctgcagtgtctggccctgatgggagagaaactacagcccagacccaatgtcctaatgacctggggatggcgggcttcaca<br>gagaaaaagacaaa	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	154013214	154013215	1001570	0	-	pAlu7-153697150;1104685097439; RIP_Alu_chr7_153_01	NA;NA	NA;NA	SINE	Alu	Yb7	gtccagtgggtgacactgactgtggccatctcattccttgtcgaggccatcattatgggctgagatacagtggatcacttactcgcagaatatatttttt<br>ggtttgagtaaaaaatagtatcggctgggcgtggtggctcatgcctgtaatttcagcactttgggaggccaaggtgagcggatcacctgaggtcgggagt<br>tcgagaccagcctgaccaacatggagaaaccccgtctctactaaacatacaaaattagccgggtgtggtggcacatgcctgtaatcccagctactcgaga<br>ggctgaggcaggagaatcgtttgaacctgggaggtggaggtttcagtgagccacgactgagccattgcactccagcctgggcaac<font color="green"><u>AAGAGTTAAACTCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTTAAACTCCA</u></font>tatcaaacaacagcaacaaaaaaatagtatctaccttattagtaaacaaaggcatattttttagctt<br>agctcttctacttcaaatgcaaacataacacggacctacccgctgctgagaacgcattaaatgttacaatactgagaggttctaaaaagacactagaaat<br>tatgtgtaaggctgtaggagatgtaaaagcataaaaaaataagtttcagaagaccaggttgtaatttttgaataataaaaaatagatttcgatgtacagg<br>ttggtttcgcatcatctctaccccaaggtgctttcttgggattgaaacggctagagatgctcccctgggccattctgccaaacaagtgaccatccctgct<br>atcactgcagggtcatct	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:DPP6:NM:001039350:5/26	
0	chr7	154489153	154489154	1001571	0	-	pAlu7-154173091; RIP_Alu_chr7_154_02	NA	NA	SINE	Alu	Y	aagacaagacaagcaagaaaagaagtctcaagtttgttagagtcctctgtaaaatacgtgtgctccaagatgtgagaaataattttgtctttgaagaatc<br>ggaccccaacaacgtcattgatgatgttagggcttcagtggcctggagtgtaacagggtattcctttcattataaaaatatacgtattgcatctggtacc<br>tcccccgctggaaaggaaacctaatacttggtcagcactttgaatgccagaggcagctgctctgattcacatcctggtgatgtggaaaggctgccaggtt<br>cggttggggctaagagcaggaaatggctctagcagaagtcctggctgcagtgaaagcagcccaactgcttgggctttatgatttgca<font color="green"><u>AAGCTTATGTTAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGCTTATGTTAC</u></font>taggagtacctgtaatgggaaaaaactccatgaggattttatgataaacaccagcaaaagagtcacagtatagaccctga<br>gggttctggaggaaagtcactccgtctacaacaggaaacattacactgttggaaaagcagtttgtgtgagccagggctctggcagaaatagagcatctga<br>gcatgagacattaagtgacactggaacaaaatataaccatcaagatgtggaattttgcagacccacctacaagattgggtgggctcagcagcaaaacagc<br>ataaaacagaagtggtgcagagcagagctggagggtgcaagccagctccacaagaggtggcccagaccaccctgctgtctgtcatcactgtacaagcacc<br>tacccct	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	64274258	64274554	1001572	0	-	pAlu7-64545854; RIP_Alu_chr7_064_02	NA	NA	SINE	Alu	Ya4	tgaagatatgtcggccaggcatgtcacgcctgtaatcccagcactttgagaggccaaggcaggaggatcacttgagcccaggagttcaacaccagcctgg<br>gcaacatagtgagaccccatctctataaaaaaagttaattaaaaataaataaataatatgtcacagattccccatgggtacagagcagagaaaaggaatc<br>tactatactatattttaaaaaagactgatcctcagcatctgcacatgtataattgggtccagacttagctacctattaggtttgtacttagtactaaaga<br>cacaaagatgaacaaaagcaagactatcccccaggcttacaaataagaacagttaattgcattacagagtgatgactgttgccatg<font color="green"><u>GAAAAGCACAGGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGAGGATCACGAGGTCAGGAGATGGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATCGCCCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>GAA<br>AAGCACAGGGA</u></font>atgtaagaaaatgcatatgaagaaatatagcccaatcaatgggatcagaggtggctttctgtaatacgtgatccctaaaaacaataact<br>aaaagagctgctaagccaaaagaaagaaaaaggcctttctagaagaaaagctgcatgcacaaagtcccaaaaaggagagagaagatggataaattagaag<br>actagaagtatgtgaggcactacactagagtgaacagccagcgaaataaggctccatttcattcccagcaatgcacccctaaaacccaaattttcccaga<br>attgtataaatgtgataaaattagaaagctgtcatacctgatacctggttatggtatactcactttttaaacttaagttaatttgattacatcttaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:INTS4L1:NR:027393:4/14	
0	chr7	128944414	128944415	1001573	0	+	pAlu7-128696390; RIP_Alu_chr7_128_01	NA	NA	SINE	Alu	Sx	ctgacctcgtgatccgcccacctcagcctcccaaagtgctgcgattacaggcgtgagccaccgcgcccagccagtgccacatacttttaaacaactagat<br>ctggaaagaactcactatctcgagaacagcaccaatccatgcaggatccatccccatgacccaaacacctccaccaggccgcacctccaacactggggat<br>tacaattccacatgagatttgggcagggacaaatataagcagtgataggtacgtccacatacaggtcatgagggctacctggaggaggcaacagctgaag<br>tgaaggccttgctgtgaagctatgggggctttttatgaggaaggctctatgcaagggtgaggatggatatggggcttgatggtt<font color="green"><u>AGAAAGTGGGAGAGAA<br></u></font><font color="red">GGCCAGGTGCAGTGGCTCACACCTGTATTCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAAGTCAGGAGTTCCAGACCAGCCTGGCTAACAT<br>GGTGAAACCCCATCTCTACTAAAAATAAAAAAATTAGCCAGGCATGGTGGCGTACACCTGTAATCCCAGCTACTCAGGAGGCCGAGGCAGAAGAATTGCT<br>TGTACCTGGGAGGTAGATGTTGCAGTGAGCCAAGATTGTGCCATTGCACTCCAGCCTGGGCGACAGGAGGAGACTCCGTCTCCAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AGAAAGTGGGAGAGAAGG</u></font>gggaacggtgactgcaggaatagaaaaaatgtccacagaggaggaaggaggacatggcagtcacatgtggatggggaa<br>ttttccattacaaatctgatgatagaatccaaagagacagtgacaagtgtcagcgagggtgggaaaaattgcaaccctcatgcgttgctggtggggatat<br>aaaatggagccgctgtggaagacagtttggcagccactcagaacgtaagtagagttaccatacagctcagcaattctactcccaggtacacgcccagaga<br>actgaacacacggtcacacaacatcttgtacataagccaagtacagcggtgctcgcctatagtcccagctactcaggaggctgaggccagagggtatctt<br>gaaccc	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	25228578	25228579	1001574	0	-	pAlu8-24993188; RIP_Alu_chr8_025_01	NA	NA	SINE	Alu	Ya5	agtgcttgagctcctactctgcagcaggcgtgtgctgggtgtctgggtggcgatggtgagccactcaccagccttgccccaactcaggttacagtctggt<br>gccagagagaagcaccagtcaaataatctgcacaagtaaacccaccattagcaatggaggaatgtgccaggctctgtgaatgcacaataccaggtcctga<br>cctcgtctgcagggtatgggaatctttcctttcagctgttagcacagtcagggagagtggcctgtgcaaaggcccagaggtaggagacaacctgactgac<br>atcctcacagtgagggggtgtctggtgtgagatgaggctgtagagacagatataagtcagatccccctgaggccggtgggcaaatt<font color="green"><u>AAGAATTTTTATAT<br></u></font><font color="red">GGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCT<br>CTACTAAAAATACAAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGG<br>CGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAATTTTTATAT</u></font>ttaccctcaacataaatgaaagtcagtaagatgttttcagcgagggaggagcgggatgagatcaggtgtgcttacagaatagaac<br>attcaggatgcagtaaggagaagagaaaatgagcaaagaaagaacagaaacatgaaaaccaggtaggaagctacggcagttgtccagggaagaggtcatc<br>gtagctccaatttgggtagtgacaatgcagatggagagaagggagagagagacttgagagtcctttcaaaggtaatgctgacaggtcttatctactaatt<br>tatgtgagttataaaggaaaaggagatatcaagggtgactttctggcttcttgcttgtgcagtggatggataggtgggtggatggatgggtgggtgggtg<br>g	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DOCK5:NM:024940:13/52	
0	chr8	16147194	16147195	1001575	0	-	pAlu8-15877999;1104685163697; RIP_Alu_chr8_016_01	NA;NA	NA;NA	SINE	Alu	Ya5a2	aatcttctctgctttcttttcttagtttattctcttacatttcaatatttttaataaaaataaattttatttacaaaggtaaaggataattactggtgaa<br>aattcatcctacaaataaaagaagaaagaagaaagttaagatttattttaaacctacaatgcaaggcaaatattataagcatttgggtcaacataatttc<br>agatattagctacatatccatctacctgtatctctacctacgtatctacaaaaatcgtaatggttatgaaccctcttttaaagtaacaactaggcttttt<br>tcactaactatatgccaagaaaatgttacatgccaataagtgtacgcatacatacaacacatgtacatatgcttatatattttt<font color="green"><u>AAGAATCCATAATATG<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT<br>AGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGA<br>TCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAGAATCCATAATATG</u></font>tatacacacatatatgtaaggata<br>tatatgaacacagagacatatattgcctttttaatgactggatattttatttttattatgttaactaaaatatgtaataattatgtaataatgtatataa<br>tagagtttaataataaatcatctctatgcccaaaacactcctaaaaaataaattactatttatgatgccccaaattgggaatcaaccaaaatgttcttca<br>gcaggtgaatggataaacaaactgtggtcactcatacaatggaatattatttcgtgataaaaaccaatgagctatcaagtcacaaaaagacatgggggaa<br>ctgtaaatgcatattgctaagtaagaaaagccaatctgtctacacactgtattgttttaa	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr8	6032386	6032387	1001576	0	+	pAlu8-6195558;1104685046690; RIP_Alu_chr8_006_01	NA;NA	NA;NA	SINE	Alu	Y	caatatttgtgaagagacatttcatttaattacattagacaaggagatggtctcgacttggaaatgctcaggaaataaacttttcaatgtaatttcccac<br>tggagagtatacacataataaagtcattgacttcagctagcactaatcagtattaatgccttcaatcattgccatcaatagctatcttggagaatcacaa<br>aatttaactgccttcctacagtggaggcataaacggatacgggtccccttgtaggaagaggaccaggagctgcaccaatggctgtgtttcctcctcgatg<br>accttcccatgaatgaatgtgtcccccttggatactgccatccactcaccagccgtccattagttcttcagaagtattgatc<font color="green"><u>AATATGCAACACTTAAGG<br></u></font><font color="red">CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AATATGCAACACTTAAGG</u></font>tttcaaacaacacttaaatgcaatttttgaaggtatctcaaggtgggccttggtaaatggtaacttttcaaaggttgcctga<br>agccataacaacagggggagcacagcatgctgcctttccctgtcaaaggacatgagccttattatctcagcaatatcccaaagcacctcacaagtctggg<br>aaaaaaatttcaaaacagcaagcaattttcagccccaaactgcacaaattaaagcatttctctctgctctgaacttattcagtctcagtacagatatgtt<br>aaatgaactgacataagaagtaaaatgaaaattaaattaaatttgccttttccctgcagggaacactacccataaataaaatgctgcgaacccaaccgtt<br>	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr8	75537902	75537903	1001577	0	+	pAlu8-75098532;1104685425738; RIP_Alu_chr8_075_01	NA;NA	NA;NA	SINE	Alu	Ya3	tttgacacagaaaccactaagaagagggtaaaacaaaaattgggaatgagaatcctagaattttttttatacttgaatgatttcaaaagatatgccagca<br>tttaaacaagcctttaagaatctagtagattagaaagcatttgagtgatgaagtgacaaggacgtaagttgaaatcaatacaaatacaaaacctgatgaa<br>ttgtttcattcagaagagatcaaattattaaaagatcaagtgcaaagggaaaagtttatagatattaatgtgttctgataaactaagaaccagacagtac<br>atgaaagcttagctttagggtggatgacattgcaagtgatatgtaattaaggcaataagttacggcaaatgagtaaataacatttct<font color="green"><u>AAGATTGATCCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATGCAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAGA</font><font color="green"><u>AAGATTGATCCTC</u></font>agttgtgggctgaaacaaattgatgtagcacagtaagcatgacttcaagaatattttaggataggtgtggtggcttatgc<br>ctataatcccagcactttgggaggccaaggtagaaggattgcttgagcctaggaatttgagaccagccttaggaacatagggagaccccatatttattaa<br>aaaaataaaaaaataaattagcgggatgtggtattgtgcacttgtggtcccagctactcagaagggtgatatatgaggattgctgcttgagcccgggagt<br>tctaggctgcggtgagctatgattacaccactgcactccagcttgggtgacagagcgagaccctgtctcaaaaaaaaaacaaaaatagtattttaacaga<br>ggtgcta	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr8	124749365	124749366	1001578	0	+	pAlu8-124348981;1104685370895; RIP_Alu_chr8_124_01	NA;NA	NA;NA	SINE	Alu	Ya5	agaatttgttaccaaaacaccaggagttttgtctaagttctgttgcttgacacccagaaagccaatcactgagaagacgactgttgccagggaagaaggc<br>tttaatcgggtgctgcagctgaggaggtgggagatagagtcttgagtccatctactcaagcacctaaaatcaggggtttgtatagcacggcagaaatgta<br>accatgtatgggaaaacagaaattaggaaggagtgaggaagaggagttggtcaacaggaagcaggtggtcagatagggaatcatgatgggtgagggtctg<br>gtgtctctttgcccagatgtgatggtcttataatttcagctcctcgatattatcttgggagagggggtgatgactgggttcctgag<font color="green"><u>AAAAGAACTCAGGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAGAACTCAGGT</u></font>aagacaactgtaactttctcaaattttaagacttcgggatcaatttttatgtttattcaaaagaaaccataaacat<br>cagttctagggagacaattgggctggtttcaaattgctgtgtgtgttgtgactggaaggatgcataagacatggttcttggcctcacagagctcctggtc<br>tcattagggatatggatatagagaatgacaaagaaaaatacggtaagtgctgtgatgggattgtgtgaaacgaacacacagaaggggtgacactaactgc<br>acaggagagggggcaggcaagtcttgccttctaagagatggtgaggcttgagctgccactgaaaggaaatgtggaagtcaagggataaatttggctggag<br>aaagggagga	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr8	125959152	125959153	1001579	0	-	pAlu8-125558756;1104685371220; RIP_Alu_chr8_125_01	NA;NA	NA;NA	SINE	Alu	Ya5a2	ttgatcagtctggctaaccttttactcttctacctttttctaggcattaagaagcatacattagagatttgtcagtctcattttctttcttctcatcctg<br>ctagcagggccttagagacaataacagcaatcacacttatgcagctttcaccatcaaccatgccctggaccagctgctctacgtgtagtatctcatttaa<br>ttctccccaataaggtagctaagtatgattatgatcccattttatggctgaggaaaccaagattcgggaagctcaagtggttttcccaaagtcacagaac<br>tggtgagacatggagctgctgtgatccgtgtacatttcattgcttcctttcctcttaaatgattctctcaagctatgaaatgtctat<font color="green"><u>AAGATCAGAAGAA<br></u></font><font color="red">CAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA<br>ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCGGGGAGGCGGAGCTTGCAGTGAGCCG<br>AGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAGAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATCAGAAGAA</u></font>atggaaggagaagca<br>agaggctgaataatcctcaaaagaagataattaactcttagatggatgagaactatctgcatgtttttatactttttaaactctctctggaagcatctca<br>ccaagagtgtcattagagtttattcattatggagtcttctaattcattagatttcagttcatttttgctgacatagatttcacatccccagtgtttaaaa<br>caccaggcgaggatccagaagtgagaatgctgtggacataaagatgaacactttaaatatcagtctgtacagaactcccacatggtggggggccaagact<br>attcatatcccaccactagacaaagaaatcctagtggggccaggatagtgctctgagagcacaccgcagaaa	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr8	139395162	139395163	1001580	0	+	pAlu8-139010376;1104685071563; RIP_Alu_chr8_139_01	NA;NA	NA;NA	SINE	Alu	Y	ggccaggctggtctcgaactcctgacctcaggcaatccacctgccttggcctcccaaagtgctgggattacaggcgtgagccaccgtgcctggcctaaaa<br>catattctaaacacagaattaagcaaagagtttttagacttggtacagagaacatgaaccataaaagaaaaacataataaattttgtttgtttgtttgct<br>tgtttgtttattttgagagatgaggtcttgctatgtcgcccaggctggcatcaaactcctggtctcaagtgatcctcccacttcggctccccaaagtgct<br>gggattacaggtgtgaggcactgtaccccgcagataaattttagttcattaaaactaaacacttttgtgctatgaaagacactgtt<font color="green"><u>AAGATACAAGCTAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCGTGCCTGTAATCCTAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG<br>TGAAACCCCGTTTCTACTAAAAATACAAAAAATTAGCCGGGCGTGTTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGATACAAGCTAC</u></font>aatgtgggaaaaaatagttgcaaatcacatgcagtggacctcagtatctgtgtattctgtatttgggaatttgtttactcaaaaaaa<br>tttgttttagccccaaatgcaacactcacagcacctttgtggtcattcacagacatgaacacagtggtaaaaagtttgaatcttctgacactcgggtgcc<br>caactgaggttaagcaatactaaaaacaagtatcccttttgcaatttatttagtctcacatatttgtgtactctttgctttttgttggtgttccactgtt<br>tgagatggaccccaggcatagtactaaagggctgtctagtgttcctaagggcaggaatgctgtgatgtgccccatggagaaaggatgtgtgttagatga	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:FAM135B:NM:015912:2/20	
0	chr9	2341304	2341305	1001581	0	+	pAlu9-2341303;1104685690672; RIP_Alu_chr9_002_01	NA;NA	NA;NA	SINE	Alu	Y	gttttaggcttcagaattattagaaacattttttcttatgggtcctacatatttttattaatgtaattcttttttacattttatttatttataaaattat<br>ttatgtaattttattaatgtaatgtagtcttggttgctatattgatgtggtcttttcttacattatatcatctatgtggttattgcttatatgtacatat<br>gtatgggtgtgtatgaaagctaatgtttttatctattatttctatacccctaatacctttctgaattctcttactgattgtaatagcttttcagttagtt<br>ttcttgttttccaagtatgtagtcatagcctctgtaaataatagtattttttcctttctcttttctaactcttttcataactct<font color="green"><u>AAGAATTATGATTTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCTCTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAATTATGATTTCT</u></font>ttctcttccccaattttgttggctatgacttactagtacatgtcaagttctatttctgactataatgggactattttagtgcttc<br>ccattaaacataatgctagttttggggttatgactgaattacttgattttgctatagatttgatttgtctaacattattttgttgcaatttaaaaaaatt<br>aagaatgaatattgtattttgtctggtgacgtcatttaatacatttccccccatgcttatataatctcaaacacagggggtttgtcattgacttatagaa<br>attgttttgtgttatatacacctacgtttatcttattgctcattatataatacttcgtggaattttttttttccaaattagatttagctcattgtttta	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr9	103249818	103249819	1001582	0	+	pAlu9-97667445;1104685433208; RIP_Alu_chr9_101_01	NA;NA	NA;NA	SINE	Alu	Yb9	attactttactaaacgtataaatccaatttataccacaagttttggtaactctggttttgccatttcttcacttttattatatttactggaaacttaaaa<br>gtatggaagtagcctgtgtgtcccttggcctttgaaaggccctgtctttcacttatcttgattgtttatatacatatgtatcttatatatgaatcacaca<br>cacacttactatatatatatatatatatatatatgcacacaaatatctttattccacagcaaaggaaaataaacttggccttaagttccctaatgattta<br>gcaaacaatcactgcaaagaaatattaggggaggattgcttgaagaagatgcagtccatctagtttgaatgatctcagaggtatc<font color="green"><u>AAGAATGAGAACCTT<br></u></font><font color="red">TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAACCCCGTCTCTAC<br>TAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAG<br>CTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>AATGAGAACCTT</u></font>atatgcttgtgcctacacctttcctactggaatcattttggaggaatagcacttgtgtgcttttggtatgaaatattaggggaggatt<br>gcttgaagaagatgcagtccatctagtttgaatgatctcagaggtatcaagaatgagaaccttatatgcttgtgcctacacctttcctactggaatcatt<br>ttggaggaatagcacttgcgtgcttttggtatgacaccatctgatttgtctgaaggtcatgatcagaaaaaagtctgttcaacttacccttgggctgttg<br>tccagtaatctcttcataggctatgctctttatgaagtgctcagagatccccgtctgattagaaaattaagaatagttgtgctattcttaacactgt	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr9	102742721	102742722	1001583	0	-	pAlu9-97160342;1104685433313; RIP_Alu_chr9_100_01	NA;NA	NA;NA	SINE	Alu	Yd2	agaataaatgaatttatactttaaaagagaaaggaaaggaaaaataaattttccatcttttcttcatttatgcaagctttgattggatttcaaaggcctc<br>cacttaaaaaaatcattgactccctgggtttaagggattattgtctgtggaatttttaattactttttgaagcaaaaagataattggattgaggatttga<br>ccaataaaagagaaactgatttgatttttaatttttgggattttaattaaaatctatagtccctatctagttagtatctgatacattttggctcaaaggg<br>tcactcttcctcccatgtataaagtcagtcacatgagcacatatacctctttagacttttctatactatatagtaaatatgtccatta<font color="green"><u>AATGAAGAAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGGTGAAACCCCGTCTCTACT<br>AAAAATACAAAAAATTACCCGGGCCCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGC<br>TTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AATGAAGAAATA</u></font>aatacatgacagcttaaggtttggaagctgtgagtggcagtgtttaaatgtctggactctcaagtcaaatgtcataattcac<br>atgccatgctcatttcaatcactctttgtcactgtcaaatagattttactgtgcagggccctaaactatatgggcactacagggacaaaaagataccagt<br>ctacataaaaccacactgttgtctttccaagtgtacctgtatctatccttctatagcctgcctaattctttatttaaattttaccattatttatatttat<br>gtaaatattatttatattcctgttttaagcctcttcagatacttaacaaacacacaccaaaccaaccaacctacaaggtatttatgtttctcaagatttt<br>aaagac	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr9	95411207	95411208	1001584	0	-	pAlu9-89670507; RIP_Alu_chr9_093_02	NA	NA	SINE	Alu	Yc1	cagacaaacaacagttcagaaaatttgtcaccagtaaatctgccttgcaagaaatgttaaaagaacttcagagagaaggaaaatgatatagatcagaaat<br>tagaatctgtagaaagaaagggagagtattagggaagtaacaagtgaggataaaataaaaacttttttcttattcttgatctagcagacaagtttgttca<br>ccaataataatagcaacaatgtacttcatgactacttcatgactacagtttatgagtaagtgaataacaataatatttcaaggtatgggagggaacaatt<br>aggaatactatttcttgctctacccatagagtgctaagtatttgaaagaggacttggattagtcataaacgtatatcgcacattttaa<font color="green"><u>AACAACCACTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AACCACCCACTAA</u></font>aaaaaaagttttttaaaaaagcgttattgatatgctgagaggagaaaaaaatgggatcacatcgaatgctcaattaaagcc<br>agagaaggcataaaaaagattagacaaaaagaaaaaaacaaaacaaataacaggagcaataaacaggaaacagtaacaaatacggtatatattaatccaa<br>ctacacaaataaccactttaaatatcaatggtcctaaatataacaactaaaaagcagacactgttagagtggattaaaaaacaaataaataaaatttaaa<br>aaaacaaggaccaactatgttgtctaacagaaaccaacttaaaatataaagacacagattaaaagtaaaaggatgaaacaacactatgcccacaaattca<br>atagcct	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PHF2:NM:005392:1/22	
0	chr9	96354079	96354080	1001585	0	+	pAlu9-90613390;1104685436380; RIP_Alu_chr9_094_02	NA;NA	NA;NA	SINE	Alu	Ya5	tattaaacctataaataaagggctatatgaggttaaacgtattcaaatttctatatggtttaaaacattgaggaaatgtattgacaaacaaacttaagaa<br>actgcaaccaatctactctggacaaaaatttagatactatctcttcaaaataagctatctagtggtatttacacacattcttccatatatcaacagtatt<br>tcacatgctcataaccttaaaaataactgaaaagtgtcagaattataggccttacacatttctgtgggcttgaaaaatgatacaatatagattgtcttta<br>aggcagctaagaaaatgcataaacttctagagtaatcagtttaaaaaaaaaaagagttcataccaaaggtagtaatactacgatt<font color="green"><u>AAAAGAGAGCTCAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAGAGAGCTCAAC</u></font>actgcaggttcttaaaggcaaaagttaataaagccttgtttttggtagtgaatctctgccttgcaaaattatacacatgatt<br>ctccccccttcatttgcctcttgcaaaaatgtggtgatgaaccaggtttgctcatgcagatgatgatactccttcaaaatggttgcagagaaataaaatg<br>aagggaatatggttcacttaataatctcataaattagaacttattaccccagtgactcttacatagctccagacaaatatttgagagagatgaaatggcc<br>ttttgctaccaatatcttatgtgatgcttcactttttggttccttggataactacttacaactcattagcccatttatgccagaggttgcaattttttga<br>att	Other;Venter	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chrX	2741992	2741993	1001586	0	-	pAluX-2262053; RIP_Alu_chrX_002_01	NA	NA	SINE	Alu	Yc1	aaaaaaaagtctattaaacaaagtaaaagaaaaccaagatccaactctatgttgttacaagagacgcttgctatatatttagagcaagaatatttagcag<br>aaggaagattagaacagaaaaaaatacagcagaaatgaagttgcacatcttaaatatatacaatgtttgtttattatgctttaaaaaaatctagaagaat<br>gaaaaatctatttaaaaaaaaagaaaaccaagatccaactatgtgctgtctatatgacatttgccttactttcagcagaaggaaatagattagaaaaaat<br>aaattatgcaaaaatgaagctgtgcatcttaaatatatacaatgtttatttgtcaattataccttaataaagctggaaaaattaaaaat<font color="green"><u>AGAAAATATTT<br></u></font><font color="red">GGGCCAGGCGCGGTGGCTCACACCTGTAGTCCCAACACTTTGGGAGGCCAAGGCAGGCAGATCACAAGGTCAGGGGATCGAGACCATCCTGGCTAACACA<br>GTGAAATGCTGTCTCTACTAAAAATACAAAAAATCAGCCAGGCATGGTAGTGGGTGTCTGTAGTCCCAGCTACACAGGAGGCTGAGGTAGGAGAATGGCG<br>TAAACCCGGGAGGCAGAGCTGGCAGTGAGCCGAGATCCAGCCACTGCACTCTAGCCTGGGCAACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAGA<br>AAGAA</font><font color="green"><u>AGAAAATATTT</u></font>aaaaattgttaaaatcatatctggaaataaatattagttttcaaaacattgtttttttacattttgccatttgttaaggatttt<br>gatgatcttaaatgaattgagtaactttctttttggttaaaactaatatttgtaggaaattcttttttagaatatggccttgttggtctttataacttct<br>gaagtgatgttgtcatttgctccactttataaaataaaagcaaagtatgattcttaaaagtccacatcaagtgacagacatctgcttctatctgtgcagc<br>tctgttactacaactctttctctacaaagtgtgcaagcttcagtgtatggcctcagcatgtacacagttccacaggttgtgcactgcatcacatcaccgt<br>ggata	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:XG:NM:175569:9/10	
0	chrX	2996938	2996949	1001587	0	+	pAluX-2517000; RIP_Alu_chrX_002_02	NA	NA	SINE	Alu	Y	gcaacctccaactcccgggctaaagcgatcctccagactcagtttccagagtagctgggaccccaggtgcttatcaccagcctagctaattttgtatttt<br>tattttttgtagagataggttctcattatgttgcccaggctggtcttgaactcctgggctcaaggaatcctcctgcctctgcctcccaaagtgctgggat<br>tacaggtgtgagccaccattgtgcccagccatatatatgattttaaaatatggtaaaaatggggtgacaaaaaaattcaactaactttgcatagatgaaa<br>agcatttctataactttggggatttggcccacagtcctgagcatgtagcttttgcctgcaaaacattcttaatcttcaaggagatgttt<font color="green"><u>GAAAAATTGTA<br></u></font><font color="red">GGCCGGGTGCGGTGGCTCATGCCTATAATCTCTGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCATGGTGGTGGGTACCTGTAGTCCCAGCTACTTGGGAGGCCGAGGCAAGAGAATGGC<br>ATGAACCTGGGAGGCAGAGCTGGCAGTGAACCAAGATCGCATGACTGTGCTCCAGTCTGGCTGACAGAGCGAGACTCCATCTCAAAAAAAA</font><font color="green"><u>GAAAAATTG<br>TA</u></font>atcatctgtggctatcattgtctcagagtatttacaaaggactctgagagacaatagggatgaactcctgtttgtgtttttcctctcagaggagatat<br>ttgaagtgagttttgaaataagtatagagacgagatagggattgaatcaataatcccatgtccaatattcattacctgataactgagtagggatatgctg<br>agaaaagtgtcatgtgtttccttaagaaaatatgacctcagccaggactgagcaaaactatgaactggacgcagtggtcctcaaattccatgtttctttc<br>ttttcctcaattcagttctttcctcagcttccacttttcctttacttggtaattccttattatattaccttttgcttgtctttcctttctc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ARSF:NM:004042:2/11	
0	chrX	2506937	2506938	1001588	0	-	pAluX-2026967; RIP_Alu_chrX_002_03	NA	NA	SINE	Alu	Sx	acacatctgtaatcccagctactcaggaagctgaggcagaaaaatcgcttgaaccctggaggtgggggttgcagtgagccgagatcgcgccactgcaccc<br>agcctgggcgacggagtgagacgccatctcaaaaaagaaaaaaaagaacaggctgcctcagaagtggtcagaggtgtttgtttgccttgttgtgtgcact<br>tccccaagggaagtgtagcggggaggagagacgaatacgcacgtgtttgggtcataggactttacactggataagagtattgacataccttccaaattta<br>tatcactgaaaaaaaaaaga<font color="green"><u>TTCTTTAGCAGAAGTAAACATTTTGGAATTCAAGATAAGTGACATGGGGGAAAAAGAATTGGGTTGAAAATCTCACTCTA<br></u></font><font color="red">GGCTGGGCGTGGTGGCACATGCCTGTAATCCCAGCACTTTGGGAGGCCGATGCGGGCGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCCGGCCACCAT<br>GGCGAAACCCCGTCTCTACTAAAAATACAAAATTTGCTGGACATGGTGACACATGCCTGTAGTCCCAGCTACTTGGGAAGCTGAGGCAGGAGAATTACTT<br>GAACCTGGGAGGCAGAGGTTGCGGTGAGCCGAGATCGCGCCATTGCACTCCAGCCTGGGTGACAGAGTAAGACTCTGTCTCAAAAAAAAAAAAAAAAGAA<br>AAGAAAACAAGG</font><font color="green"><u>TTCTTTAGCAGAAGTAAACATTTTGGAATTCAAGATAAGTGAC</u></font>gttttcaaagctgttctcagttaatgttgttttcaaagcctgagg<br>ttgtggcttaggttattgagacgcttcttaaccattcttctcctccttcaccctaaaattaagatccttttatatctcctcttctcaggctgtgttccac<br>agatgttcatattggaacttgcctgcattgcagatgtctgtaaaaaaaaagcggggggagcggagaggcaggctgaaaggtagtagagaattccaaggtg<br>ccgacagagaaggaaagaccagcctgggtcttacatattagctctgtgatactccaagctccacagtgttaagct	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	148862496	148862792	1001589	0	-	pAluX-146513150; RIP_Alu_chrX_148_01	NA	NA	SINE	Alu	Sp	ctcctacatcgcacatccgcacgaccctgtgagagtcagggcagaaaaggaaagctaaaaggcggacaaatgagtgcaagagagcaaaaaagggaaccct<br>ccctaatctaatgggcagggcactggacgcatgcgagcacctcctccttgggggagaggtcacagccttcagatggaggggcagtgggacactccatgat<br>ctctggggttacttacaatttggagtgcttaggtgaatactgagtccaaaacagccctgcaaagacacagaagaacaagcccctgtgcggacgaggtctc<br>tgaaatacaaaaagccaacatggggttagaggcagaattcagaaagagctcctacaactccataccaacaaggcaaatgactcaat<font color="green"><u>AGAAAAATGGGCAA<br></u></font><font color="red">GCCAGGCACGGTGGCTTACGCCTGTAACCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTGAGGTCGAAGTTCGAGACCAGTCCAACCAACAAGG<br>AGAAACCCCATCTCTACTAAAAATACAAACTTAGCCAGGCATGGTGGCGCATACCTGTAATCCCAGCACTCAGGAGGCTGAGGAAGGAGAATCGCTTGAG<br>CCCAGAAGGCAGAGGTAGTGGTGAGCCGAGATTGCACCAGCCTGGGCAACAAGAGCAAAACTCCGTCTAAAAAAAAATGAAAAAGAAAGAAAGAAAA</font><font color="green"><u>AGA<br>AAAATGGGCAA</u></font>aagccatttcctagacgaggaaagcaggctgaccaaaaagcatctgaagggaaaccatgaatcagggtcaaagcggtcccagactggcc<br>gtgccccggaacactaggcaggatcaaacgtgaaccatctccagagaagggcaacttcctcctgggcctcagagtcaaaaaagcacagcgaggagaggtg<br>gctgcactctggaaagtgtcagtggggaggcaaaggaagaggaaggcggtgacaggctcagaaaacaggaggagttgcacggaaattagtctgagcaaaa<br>agaatgcttctctaggggagcatgtgggcagaagagaaggactgcacagccggggatgctgagcacggagaggcaaggtgatggcaaattcgcaagg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LOC100272228:NR:027456:4/12	
0	chrX	91027980	91027981	1001590	0	+	pAluX-89177051; RIP_Alu_chrX_090_02	NA	NA	SINE	Alu	Y	gagatttaacagtatttaaatttgggccatagatgaaaatgaattctacttttgactagtaactattcttgatccatcctttgcttttgtttgagagaat<br>attatctctatttgagaacaacatggaaggcattgaaactagttttccacaaaggccagaggacaaaaatatttatttccttagttgattccttatcagt<br>tgacctggtcgcacctttaatttaattgatattattattacgtttgccttgcaagttctcagatatctccaaccttttgtgttgtcattcatcgactacg<br>ggaatattctcaatgaaatgtccttgatggtctctctggttcttattctagtcatgaaaaggaaaagacaaaaagatagcaaatcttaa<font color="green"><u>AACTAGTCATC<br></u></font><font color="red">GGCCGGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGAGGCTGTCTCAAAAAAAAAAAAAAAACAA<br>AAAAA</font><font color="green"><u>AACTAGTCATC</u></font>atagataaataaaaggaacttttagtgaactttgtccattaaattataagtagcttacctgatgagctacagtgtactgtatac<br>tttctcccctgcaagcactcaaagaaatattatttgatcaaaatctatagtgcataaattaaacaaaaaatactgaaatatattctcattttattttaat<br>tatgaaagtttatttttaatgatatgatatttaagctattatatttctcacttttttattttcaatgatttaaatgtaaaaattataaaacaattttaat<br>ctcattcattaattcatctttcatgtataagtctgttttctctgttgaccaccctgtccacattatgaatgaaaatatgtatatacttggccgggcgtgg<br>tggct	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PCDH11X:NM:032969:2/6	
0	chrX	89307171	89307172	1001591	0	-	pAluX-87456226; RIP_Alu_chrX_089_01	NA	NA	SINE	Alu	Y	agtttgaaattttacatttatgtctttaatccatcttgagttgattatgtgtatggtgtaaggaagtggtttagctttaatcttctacatatagctagcc<br>atttatcccagtaccatttactgaacagggagtctttttcccattgcttgtttttgtcagctttgtcaaagatcagatggtcatagaagggtgatcttat<br>tttggagctctttattctgttccattggcctatatgcctgtttttgaaccagaaccatgctgttttggttactgtagcctcgtagtatagtctgaagttg<br>ggtaacatgaagcctccagctttgctacttttgcttaggattgccttggctatttgggttcttttttggttccacatgaattttaa<font color="green"><u>AATAGCTTTTTCCA<br></u></font><font color="red">GGCCGGGCGCGGTGACTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGGCCATCCTGGCTAACACGG<br>TGAAACCCTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATAGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AATAGCTTTTTCCAG</u></font>gttctgtgaagaatgtctttggtagtttgataggaatagcactgaatatgtaaattgcattgggcagtaaagccattttattgg<br>tattgattctttctatccatgagcatgagatatttttccatttgttttgtgtctcctctgatttctttgaacagtgttttgtaattctcatcgtagatac<br>cattcattttcctcgttagctgtatttgtaggcattttttgtgtgtgtggcaattgtgaatgggattgcctttctgatttggctctcagtttcactattg<br>ttggtgaatagaaatgctagtaatttttatacattgaatttgtatacagcaactttgctaaacttgtttatcagctgaaagagcttttggcccaagactg<br>tg	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	89451792	89451793	1001592	0	+	pAluX-87600864; RIP_Alu_chrX_089_02	NA	NA	SINE	Alu	Y	cctatcctcagagatccactaggcaatgccccaagtggggactctgtgtaggggctcccactccacatctcccctctgcactgccctagtagaggttctc<br>tatgagggccctttctctacagcagacttctgtctggacagtcaggtgtttccttacatcttctgaaatctaggcagacattcccaagcctcaacttgac<br>ttctgcacacccaaaggcccaacaccatgtggaaaccaccaacacttggggcttgcactctctgaaacaatggtacaaactgtatcttggccccttttag<br>ccacagctggagctggaatggctgggatgcaggataccatgtcctgaggctgcatagagcaactgggccctggccctggctcacaa<font color="green"><u>AATTATTTTTTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGTTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACGTGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCAGGCGCCTGTAGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAATAAAATAAA<br>AAAAAATAAAAAAATAAATAAATAA</font><font color="green"><u>AATTATTTTTTCCT</u></font>cctaggcctccatgcttgtgatgggacaacctatcatgaaggtctctgaaattccctggag<br>acattcttccccactgtcttagctattaacattccactcctgtttacttatgcaaatttctgcagctggcttgaatttctctccaccaaatttttttttt<br>ttttcttttttaccacatggtcaggctgcaaattttccaatcttttatgctctactttccttttcaatattagttctagtttcagacaatctgttttttc<br>atacatacaagcatacaccttcagaaatagccaggtcacatcttgaatgctttgctgattagaaatttcttccacacgataccttaaatcatctcactga<br>agttcaaaattccacagatctctag	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	90169890	90169891	1001593	0	-	pAluX-88318951; RIP_Alu_chrX_090_03	NA	NA	SINE	Alu	Yc2	ttcttgcccttgccccaacatgtgtctggcaacatggcctccccaacatatccccatgtgtagaacatcatggcgcactgcatttgcataataaaaggct<br>agggcggaagggccagctttttcatgggctatgtgaatgacatgcctggtcaaaccaatcccctgagccctatgcaaatcagacaccacctcctccagcc<br>tactcatataagtagccacttttctgttgcacatggggtctcctctcttggctttgggaacccctccctctgtctgtacaggggagcttcttccttcttt<br>cttctcccttctttcttgcctattaaactctccactccttaaaatcactccacaggtgtccatgtcattttacccaattcccacgaaac<font color="green"><u>AAGAGCCCTGG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAGCCCTGG</u></font>tgttcctccactcatcggagctgtatcaatagcaacgtaccaaagagttggatggattaaacaagataaatttatttc<br>tcacagttctagagggatagaagtataagatcaaggaatctacaagtttactttttactaagtcctcactccttggctgacaatggctgtcatacttgct<br>gtgtcnnnnnnnnnnnnnnnnnnnnccacctttgatatgcaaatgctggccattagaaactgggtctgcccaaacatggcaattcctgccgccttcttgc<br>ccttgccccaacatgtgtctggcaacacggcctccccaacatatccccatgtgtagaacatcatggcgcactgcatttgcataataaaaggctagggtgg<br>gagggccagtt	Other	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	81469595	81469596	1001594	0	+	PV92; RIP_Alu_chr16_081_03	AACTGGGAAAATTTGAAGAAAAGT	TGAGTTCTCAACTCCTGTGTGTTAG	SINE	Alu	Ya5	ggctgtggaatcagcctcagaagccagattgtctgagccccaaggaaacgtcaaacccctctccctctccagtagcattccccagtctgtgtcacttaga<br>cgaaaaggatctcagggtgggtggcaatgctccttcactgaaatctgcagttatctctacccaaggcttacagtaaattttttgcaaattagaaagccct<br>ttgctctctcagtaaaccctggctttcaagatttttgttttagtaaagtctttagactaaatgttgaatctttcactctctttgctcctaatcatctcta<br>agacagcaaatgcctctagcaaaaaagaggagacgtcaactgggaaaatttgaagagaaagtcacacagatacatttcagtaaggttgtctctgttactt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>gaggcttacaagaaggaaagaattccctctctaaacacactctaaacacacaggagttgagaacggggagatttattcca<br>gaaccccttctgtgcgttggggcttctggtagcttgcctttcttggtaacgattttctcagagactgggtagattcgagtggagcctggggcatggttgt<br>tggtccaatggcgggggttggggagacacaagcagttggcagggaacttacaaatctccaggaggttattgagaataaaaattcagatattgccatcttt<br>tccatttcaaagcaccaagagtctgtcatcagcaattgtgcctttctaggtgtcacctgaatatctaacattgaggcattgaaagatagatcaggactga<br>ttttactgagcattttcaaa	Other	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Batzer MA, Arcot SS, Phinney JW, Alegria-Hartman M, Kass DH, Milligan SM,Kimpton C, Gill P, Hochmeister M, Ioannou PA, Herrera RJ, Boudreau DA, ScheerWD, Keats BJ, Deininger PL, Stoneking M. Genetic variation of recent Alu insertions in human populations. J Mol Evol. 1996 Jan;42(1):22-9.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8576959">PMID:8576959</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	precise insertion position unknown TSD unavailable	55	437	122	NA	intron:CDH13:NM:001257:2/14
0	chr6	104848925	104849231	1001595	0	-	Yb8AC1371; RIP_Alu_chr6_104_02	GCTGGAGGCTGAGAAATCAC	TAGTCTGGATGGGCTCCACT	SINE	Alu	Yb8	tctgtggggatcacagaaagaataatgaaggagtgaagtttggtaatgaatgaatgaatttggtaatgaagaacaattgcatgttctttgtttccctgta<br>tctacatccaagcaatgtgacttcacatctgttctataaagaggtgatctatttccccaccccttggatctggcctagccttatgatttgactaatggag<br>taatagaaaatggaatgtaagatgagacttgagaagttccctcacattgaggcttattattttgctttttggaactcctggggctagcctgctggaggct<br>gagaaatcacatggggagaggtcttatcattcctagatgtcccagctgataccatcatagcccagccagctgacctttaaggtttg<font color="green"><u>AAAGAATCCAGATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTTAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAGAATCCAGATA</u></font>aactcagtggagcccatccagactagaactgactaggagaacccagctcaattttctcatctgcagaatcatgagctaa<br>ggaaatggttgttgttttgaaccactcattttggaggttgtttcttatatatcaaaagcaaattaatgaacacttaacatcttagttaattggagctcag<br>gactgttttgtggagaatgggtaagagtgatgtataagtgtttcagggctgtaacaaagctccacgagctggggggcttaaataaaagaagtcatctcac<br>agttctggaggctaaaaatctgaagtcaagatgttggcagggttggttccttctgacagctgtgagggaagaaatggtttcaggcctctctccttggctt<br>gtagatg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	456	135	NA	intergenic
0	chr1	183639730	183640057	1001596	0	+	Yb8AC992; RIP_Alu_chr1_182_02	GTAATGACACAGAAGCGGGG	CTCTGGCCACTCCTTCTCAC	SINE	Alu	Yb8	tatcagacatctaagagatgaatctggagtttaggggagaggggcagggtggggctatagatttgggagtcattagcttatatacctggtatttaaaatg<br>tggagaccagatgagataatctagggagtgagtataaagaaaagtggtccaaagactaagctccttcgtaatgacacagaagcggggaagggaagtgctg<br>gcaagggaagggcatcgtccctttaaatgatatggaatgggggaagggcgtggtccctggctagggctctatcccctggcctgtgcctgcggacctcggc<br>gaggacaggcatttttgttttcctgcccaaatgttgcatttcccaagaccaccctggcctgccaggcccccattctgtgcctataaaaac<font color="green"><u>CCCAAGATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAACAAAACAAAAAAAAA</font><font color="green"><u>CCCAAGATTC</u></font>tagcaggcaaacacacaagcggctggaagtcgagaggatgccgggagcacaccgcaggcact<br>ggcacgccagcaggctatcgaccagcagaatgatgtggagtttggcagggcagtcggaggagagcctgggctgctaagcagacccagggctttctggaaa<br>tgttataaaacaagtgaagtttgtggtatataaattatccctcgagttaacagcctcggccgtttacaaaaaaaccacacacacacacacacacacacac<br>acacacgacggaaaaaggaggcaaagagatggggagtaactagtgaaggatctgtgagaaggagtggccagagtaaaaggaataaaacaggaaattgtgg<br>ggtcctggcaaacaactcagtataattc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	906	568	NA	intergenic
0	chr5	173539714	173540019	1001597	0	+	Yb8AC1286; RIP_Alu_chr5_173_01	TGATTTTGTGCAGAGCCTTG	TATGGCCTCATTCCTTTTGC	SINE	Alu	Yb8	gagtttgcaacaattgctttagggcttaaattgcaagaacaataatagatgcattttgaaacaggcatcgtaaatgggcatagctggcaaaatacagcag<br>ctccttgggaggtcaaagccatatcgactggcaaccttttgatcaggaaaaaaccctagtgcaaattggtgacgatttccaaccagataagcagcaaccc<br>ctgtggcctggaccatccatgaccttgagctcccgggaacagcactctgtgggctgtcagagcaaatatgaacaccgtacaaaaacaggggagaggactg<br>aggtgtcaggggaagtcgcctcggtcatctgttcagttctgtttatggtccaagtgattttgtgcagagccttgcaaagaagattt<font color="green"><u>AAAAGAACTCGATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGGGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCGGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAGAACTCGATG</u></font>aaaacgtttttgcaccataaaacacctttcctgtcggagtggcaaaaggaatgaggccataaaaatgctgttccagccag<br>gtctgcaggtgaatttcagtccctgaataaacattctctctttcatcagggacaatggtgagaaaaatacaaaacaaaacaaaacaaaacctctttaaag<br>agctgtgaatgtactaggtgctcatctcttccttacaaccctgcggttgtgggggatctgattcccattttgcagatgaataaactgaggctgagggagg<br>ggaagtctcttgttcaagatcacacagctgggacgtagcaaaaccaggatggaactttaccagttactgggagggatggagcctttgacttgcccactgg<br>tcccca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	427	107	NA	intergenic
0	chr6	12725322	12725635	1001598	0	+	Yb8AC1368; RIP_Alu_chr6_012_04	TCAGACATGCAAAGCTTCAAA	TTTGGGTGCCCTATTTCTTG	SINE	Alu	Yb8	gtaggacacaatacaaatagaataactagacaggatttttggaaattaaaagtattaaagccaaaataaaacattcaattaaaatgttgaaaaattaaac<br>taatctcccagaagtgggaataaacagagatgagaagaataaaaagaaaggaaagaaaaaatttatacgtagggatgtaaagaccgttttaacatcagca<br>ctggaagttagaagcaagagatcggtgtcctcaaaactttgagtaaaagtatccacccggccaaatgattaaccaagtatgaggacaaaataaagaaaat<br>gtcagacatgcaaagcttcaaaacattgatcttccatcagtccttacttaggaagccaataacaaagagaagaaacaaaaacaagcaaaacaagag<font color="green"><u>AAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCTGGCCAATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAC</font><font color="green"><u>AAGA</u></font>gaagaaggaggtaaacacaggattcaagaaatagggcacccaaaacaggaaggaagaggtgcagaaaagtcttagaaagatg<br>gcaaagagatgtctcagtataagagttatgtacaggcccacagacaaacaaatacatattgaaaaattaaacagaagtcaacaagagtggttgtcttcag<br>agaaaaggaaagtggagctccttatcaaaatagactttactatatgaaaaatttttattgagaagtgtttaacataattagtgggtaatacggcaaaact<br>acaaggtcagagaaaactgagcagagaggtgaaggataacagacgacatattgccctgtaatcccagcactttgggaggccgaggcaggcggatcacgag<br>gtcaggagtttgag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	461	145	NA	intergenic
0	chr9	18498901	18499229	1001599	0	+	Yb8AC1480; RIP_Alu_chr9_018_02	AGCTGAGCACATATCCCAGAA	>	SINE	Alu	Yb8	atcttttaagttgtcaagcacctaagaagctatttgttttcttgataatttttatttgcaatctagatctttcactattaacagaaattcctgggttaca<br>gcctcatgtttcaaaaagctagctttcagctatcaaagttcatggagacacctagcattcattaaactttcagttatagtcatgtataaaaattttaatt<br>ttcattaaaatacataactctaagcagtaagaaatattaaataagtacttataaaagcaaaatataatattaataaaatacattctaacatttttctcat<br>tactacttgactgtaattaggtcattgcttaaatatggccctaaatcagtccttaggctggatttagaatgtattttgactcttataattt<font color="green"><u>AGAAATAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATAGA</u></font>tatgttctgggatatgtgctcagctttaagacttcgaatcagtttgatttttaaagttttca<br>agttttttccctcaacaactggttctatctattctagtaccagcaagaatttattagtttactccccttacttccttacgctaatggtaactctaattgg<br>tgtagcaattattcattgccacagtaatgctgcataaaaaccactaatcctcagtggaatatcagataaggaattattgcttggctaggcagctctgatg<br>gactttgatggtcttgatcacatatctagggttggctggatgttggctgatctagactggcttcatctggttcaacttgggaaacccaattctgctccac<br>aagttccttatcctccagcaggctagcct	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	426	113	NA	intron:ADAMTSL1:NM:001040272:2/29
0	chr18	68277657	68277990	1001600	0	+	Yb8AC704; RIP_Alu_chr18_068_02	AAACAGTGCCAGGATATGAACAC	CACTCTTCGATCAGTTATCATTGC	SINE	Alu	Yb8	gggcaagcatgtcaagacataattgagattttatttaaaaaatatattttttttcctagaaaactcatgtacatgcaaaatcttgcatcctaacttaaag<br>gtttacaaagtccctaaactccatatgtagagacttacggaatcataaaaaccatgataagatacctttggtctccttgtgtgaggcattatttaaaaga<br>acctccagaacctacacacacacacacacacacacacacatgcacaaacacacattctatgtgtacatatacatagtatatgcattcaaaaatatatatg<br>tgatatgtgcaaaattgcatacacacatatgcactcttcgatcagttatcattgctaaagattagtcagtgactaccatcagctc<font color="green"><u>AAGAATTTCCTTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGTCCAGCCTGGGCGACAGAGC<br>GAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTTCCTTTTC</u></font>actattctattagtgcgtaacaaacagtagatagcttactttatgtgttca<br>tatcctggcactgtttttgacattctacatagatgaagagtaaacctataatacatctgcatgttgcgtattgttttcccctgtaaacatatagaaaact<br>caggaacaaagattttcagtgatgtttcctgtccaaggtcacctggttagaatatgacagttgagttcatagcatagactcactgtgacccagtgtcttt<br>tcttctccatcacactagtatttttagttagagaaaactaatggaatgaacttttctattgcttcagttctccgcagatcctatgaagtaggtttgggat<br>agggagcaggtatctataggattttctacctacc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	485	136	NA	intergenic
0	chr4	36683703	36684007	1001601	0	+	Yb8NBC469; RIP_Alu_chr4_036_03	TGCGTGTGACACATGGAGT	TTCTCAACAGTTCCCCAAGG	SINE	Alu	Yb8	aagagttatagaaatgcctggatgcccagacaaaagtttgctgcagggatggggccctcatggagaacctctgctagggcagtgtggaagggaaatgtgg<br>ggttggagtcccaacacagagtcgctactggggcactgcctagcagagcttgagaagagggccaccatcctccagacctcagaatggtagatccaccgac<br>agcttgcactgtgcacctggaaaagctacagacactcaacaccagcccgtgaaagcagctgggagggaggctgtaccctgcaaagccacaggggtggagc<br>tgcccaagaccatggcagcacacttcttgcatcagcgtgacctgcgtgtgacacatggagtcaaaggagatcatttggagtttt<font color="green"><u>AAGATTTGACTGCCCC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGATTCCGTCTCAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGATTTGACTGCCCC</u></font>acaggatttcagacttgcatggggcctgtagcccttttgttttggccaatgtctcccattttggatggctgtatttacc<br>caatggctgtacccccattgtatctaggaggtaactaacttgcttttgattttataggctcataggtggaagtgatttgctttgtcttggatgagatttt<br>ggactgtggacttttgagttaatgctgaaatgagttaagaccttggggaactgttgagaaggcatgattggttttgaaatgtgagaacatgatatttgag<br>agggaccaggctggaatgatatggtttgtctgtgtctccactcaaatctcatcttgaattcccatgttttgtgggagggacttggagggaggtaatttaa<br>tcatg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	51	618	297	NA	intergenic
0	chr14	59523925	59523926	1001602	0	-	Yb7AD136; pAlu14-58444197;1104685123357; RIP_Alu_chr14_059_03	CTTTTGGCAACCAGTTACAT;NA	GGAAATGGAAGGGAAATCTA;NA	SINE	Alu	Yb7	gtctctttgtaaaagtattccaaataataaatgaaataatgatagaataagaatatcaccattttgtaatccccaactgcattaagtaataatggctttt<br>ggcatcacacaagtgagacaataagatatcacgtgtctcctacagtcttgtcaaacattagttttgccagaaaaatggaacctgggtctgatcctatctg<br>tggatccacttgccaatttgcaggaaatatagaagatgggaggcatatagcgatgtatcttaagtaagcaaatcccaggctgctggaaactctttgggtc<br>gaatggctcaagtatttctagagataaactatgggaaatggaagggaaatctatcaattaaaagagatttaaaagacagagtac<font color="green"><u>AAAGAAGTTAAGGTTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAGTTAAGGTTG</u></font>atctctgggtggtgagaatgttttgttgttggcctacattttctgtttttatacaatgcatataaacttc<br>ctctgtaatgataacaagttgttacaaataatgtaactggttgccaaaagcaacaaaagaaacgcagttacattttttaaaaatggcaaaaccaaactat<br>tgtgctagggatgtacatttgggtgacagaactatcaggaaaaaatccaggaagacgattactgcagaggttaggataatgatttcttgtggagagagga<br>aggcatggggcacatagaagaggcttttgccctaggtggcaaaattttctttcttgatctgggtgctgattacaagcattttcaccttacaacaatgtac<br>taagccatatatat	Other;Venter	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	60;NA	NA;NA	NA;NA	NA;NA	intergenic
0	chr5	35945007	35945008	1001603	0	-	MIVI-2; RIP_Alu_chr5_035_01	NA	NA	SINE	Alu	Ya5	tttaccatactcagctagttgcactccagtgaactgattataataaaatatatttaactttgaaatgagatcataatttaattttggagaacagatttac<br>aaggcctttcaggatgttttagtgccttcacactcatcctcattcatcttcacactttgctatgtggaaatgccatttaaaggtagtttttggtaaaggg<br>aatgtcaaataacagaatttactctgatttattctttagtgtgctttgagattaacttacatttctaaactgcactgaatttgaaaacaaaatcaaccgc<br>ccatctccattaacttttatcttcaagttacaaatgcatagcttggtagggtaaggaattatatagctccatgactgtgtctaggctgagat<font color="green"><u>GAAAATGT<br></u></font><font color="red">TGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCGTCTCTACTAAAAATAACAAAAAATTAGCCGGCGTAGTGGCGGCGCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAA<br>CCCGGGAGGCGGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>GAAAATGT</u></font>catctgtcctttatcaacagccctaaattgactttttagaaaaaaaaaaaaaaccctgagccagttctgttcttagatgatctaagggtt<br>ttggtgataaggaaaggggattgtcccttgagtaacagtcagcagcagcacagccccagggttcattgtctcttaagccctttacagcacaggaaaagat<br>aagtggcccagtggacaagaagagagtggttaagggaagaagaaataaaccttcctcttctgaagggaatgtgctccaactttttaaatgaaacttcatg<br>atgagtctcattagcaaggggtgggggataggaaggtgacctttctgttcttcctgctgacatttccctttcagggatggagacataccctctatttcag<br>gc	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Economou-Pachnis A, Tsichlis PN. Insertion of an Alu SINE in the human homologue of the Mlvi-2 locus. Nucleic Acids Res. 1985 Dec 9;13(23):8379-87.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3001638">PMID:3001638</a>.</LI></UL>	E:Library screening:TE-specific hybridization	NA	NA	NA	NA	Associated with leukemia	intron:CAPSL:NM:144647:4/5	
0	chr4	2837653	2837654	1001604	0	+	ADD1; RIP_Alu_chr4_002_01	ATGTAATTGTTCAGGACATGTGGC	AAATAACATCCAGAATCTTCAGAT	SINE	Alu	Yb8	aaaccaccctcacagagtgaaattcagaaaaaaaattttgtttcaataaaaagattttgaaagatttcatcacttcaacaaaactatagttaaaaaatta<br>aaatattatattaattgaaggacagtaacagtataatgagggagcaaaaatagagaaagtagctgacattgccagaagataagtcaaattctgctttttc<br>ccacatgtaattgttcaggacatgtggctcagaatatgtgaattagtatagtaactacagcagagtctctctgggttgtgttatttgctcaattgcgaga<br>tagcatacttataaaattatttctagattcactcctgaaatcttaactgcagtctgctttgtggaatttcttcttggaagaacttgtttaa<font color="green"><u>GAGTATGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAACCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTTCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAGTATGCT</u></font>gattgatatttgttcatgggccatctgaagattctggatgttattttattttattttttgaggcagtct<br>ccctctgttccccaggctggagtgcagtagcacaatctcggcttactgcacccttcgccttccgggttcaagcaattctcctgcctcagcctctggaata<br>gctgggactacaggcacgcaccatcacacccagctaattttttgtgtgtgtgtatttttagtacagacggggtttcaccatgttggccaggctggtctca<br>aagtcctgacctcaggtgatctgtccgccttggcctcccagagtgctgggattacaggcgtcagcctctgtgcctggcctggaggttattttaaatcgtt<br>ttttttttttgggatgaaaaca	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Goldberg YP, Rommens JM, Andrew SE, Hutchinson GB, Lin B, Theilmann J, Graham R,Glaves ML, Starr E, McDonald H, et al. Identification of an Alu retrotransposition event in close proximity to a strongcandidate gene for Huntington's disease. Nature. 1993 Mar 25;362(6418):370-3.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8384324">PMID:8384324</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	460	118	Huntington disease	intron:ADD1:NM:014189:1/15
0	chr3	167030371	167030372	1001605	0	-	BCHE; RIP_Alu_chr3_167_03	NA	NA	SINE	Alu	Yb8	cctttaatgctccttgggcggtaacatctctttatgaagctaggaacagaacgttgaacttagctaaattgactggttgctctagagagaatgagactga<br>aataatcaagtgtcttagaaataaagatccccaagaaattcttctgaatgaagcatttgttgtcccctatgggactcctttgtcagtaaactttggtccg<br>accgtggatggtgattttctcactgacatgccagacatattacttgaacttggacaatttaaaaaaacccagattttggtgggtgttaataaagatgaag<br>ggacagcttttttagtctatggtgctcctggcttcagcaaagataacaatagtatcataactagaaaagaatttcaggaaggttt<font color="green"><u>AAAAATATTTTTTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGACGTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATATTTTTTCC</u></font>aggagtgagtgagtttggaaaggaatccatcctttttcattacacagactgggtagat<br>gatcagagacctgaaaactaccgtgaggccttgggtgatgttgttggggattataatttcatatgccctgccttggagttcaccaagaagttctcagaat<br>ggggaaataatgcctttttctactattttgaacaccgatcctccaaacttccgtggccagaatggatgggagtgatgcatggctatgaaattgaatttgt<br>ctttggtttacctctggaaagaagagataattacacaaaagccgaggaaattttgagtagatccatagtgaaacggtgggcaaattttgcaaaatatggg<br>taagtgctgatttttgtcattgttctc	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Muratani K, Hada T, Yamamoto Y, Kaneko T, Shigeto Y, Ohue T, Furuyama J,Higashino K. Inactivation of the cholinesterase gene by Alu insertion: possible mechanism forhuman gene transposition. Proc Natl Acad Sci U S A. 1991 Dec 15;88(24):11315-9.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1662391">PMID:1662391</a>.</LI></UL>	E:Library screening:TE-specific hybridization	NA	NA	NA	NA	Acholinesterasemia	exon:CDS:BCHE:NM_000055:2/4	
0	chr11	118465033	118465034	1001606	0	-	PBGD; RIP_Alu_chr11_118_01	NA	NA	SINE	Alu	Ya5	accctccctcccccagccattcttgcagtccaggcagccagatggctcagaaccagacactctccttttctgaagcctgaaaaaacccacctatgagctg<br>ccttcagcctctctgagggtttaagcccagcagcctatctgacaccccgggtcccagcaagagacctagcatactagggtcccagcaagagactgggagg<br>gcaccacactctcctatctttacttactcattcttctccagggcatgttcaagctccttggtaaacaggcttttctctccaatctgccggacagaaagag<br>cctgagtgaatcccttcagggaaggaaagaagagtggggacaagaactggggaggaagatgttgttaccttagagagtgcagtatca<font color="green"><u>AGAATCTTGTCCC<br></u></font><font color="red">GGCCGGCGCGGTGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAATCTTGTCCC</u></font>ctgtggtggacatagcaactgaggagagagtcaatcaatcaggtgctcattattgatcagcatttactg<br>agcctagcgctgtgctacgattcatgatggggacagaggcacataatccctggttcctgccctctgagtatatacaatcgagcaggaagaccagaaacac<br>tcataaaaagacccaaagctcaagatgttaaatgccaggctaatccaggtagtcagagctggaggtattcagaggaaagcaccttcagaactgggagcag<br>cccagaaggaatctcggggcagcgggacgggctttagctataggcaaagccagaaatgttgtgttctctcctctcggggtactgggcttcccattagctt<br>ccactcctttccagaaaa	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Mustajoki S, Ahola H, Mustajoki P, Kauppinen R. Insertion of Alu element responsible for acute intermittent porphyria. Hum Mutat. 1999;13(6):431-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10408772">PMID:10408772</a>.</LI></UL>	E:Insertion-specific detection:PCR-SSCP	NA	NA	NA	NA	Acute intermittent porphyria	exon:CDS:HMBS:NM_001024382:4/14	
0	chr11	57133182	57133183	1001607	0	+	C1NH; RIP_Alu_chr11_057_03	NA	NA	SINE	Alu	Yc1	gaactcctgacctcaagtgctcgtccgtcttcggcctcctaaagtgctggcattacaggcgtgagccactgcacccagcctgagtttttttttttttttt<br>aagccaaaggaggaggagtagttttgtgcacaaaagccactatttagagttccttaggttttaaacagataattaatttaatgtactaacaaatgcaaaa<br>ttaaaattttacttatgccttttaattttaagctgaacttgctacattaagagtagggtgatttggctgggcgcagtggctcatgcctataatcccagca<br>ctttaggaggctgaggcaggtggatcacttgaagctaagagtttgagaccagcctggccaacatggtggaattctgtctctact<font color="green"><u>AAAAATACAAAAATTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAAT<br>GGCGTGAACCCGGGAGGCGGACGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATACAAAAATTA</u></font>gccaggcatggtggcacatgtctgtaatcccagctactcaggatgctaaggcacaga<br>atcacttgaacctgggaggcagaggttacagtgagccaaaatcgcgccactgcactccaacctgggcaacacagcaagactctgtctcaaaacacaaaaa<br>aagaataggctgggtacagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtgaatcacctgaggtcaggagttcgagaccagcttgg<br>ccaacattgtgaaaccccatctccattaaaaatacaaaaaataagccgggtgtgatggtgcacgcctgtaatcccagatacttgtgaggctgggacagaa<br>gaatcgcttgaacccgggaggcgaagg	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Stoppa-Lyonnet D, Carter PE, Meo T, Tosi M. Clusters of intragenic Alu repeats predispose the human C1 inhibitor locus todeleterious rearrangements. Proc Natl Acad Sci U S A. 1990 Feb;87(4):1551-5.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2154751">PMID:2154751</a>.</LI></UL>	E:Library screening:TE-specific hybridization	NA	NA	NA	NA	C1 inhibitor deficiency	intron:SERPING1:NM:000062:6/8	
0	chrX	30619119	30619120	1001608	0	-	GK; RIP_Alu_chrX_030_01	CCTTGATAGTGATTTCAGTAAGTTC	GCTTCTTTCTAGTGAAATCTGCAAAC	SINE	Alu	Ya5	aagcaccccttgggaagtgtgacttaagccactgggacgcattataatctcttccagcctgtcaattttgtgttattattgttccaatccaccacagagc<br>aagaaagacgggaaggtaaagacttgagttggcctcaattatccgggaaaaagattctataaattgtatcaaataactattgtaccataagatgcttctt<br>tctagtgaaatctgcaaactttttttaaaaaaagaaacattcttatagtatacttctgaagaaattcttaccttgacaaagttattatttcctggaattc<br>ttttactaagactctcaacggtagactgggttcttagatcaagccacactatagaccaaaataaaataatatacatgaaaaacttcattt<font color="green"><u>AAAAAATAAG<br></u></font><font color="red">GGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG<br>GCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGC<br>CACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAA<br>AAAGA</font><font color="green"><u>AAAAAATAAG</u></font>aacttactgaaatcactatcaaggataaaagactgattagtttctataaggaattaaaattctatagcttttaagagatagaaat<br>tagaaaattagaaatgaatgggcatattgttagataaaaataaatttatgagaggatttaaagcttttatgcaaaattacagaccaagttaggagaataa<br>tacaaaccttagagtgcttattttgtattatttttatagaacaaaactacaaaaaatatttggaatatagattttctaagtatacatgaggccagagaat<br>atctaaaagctaggcaggctagttggtagcacaaaatgcaaaacccaggatcatcataccatatataaagtgtgcatcttaacaaactagggagcaattt<br>gtgac	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Zhang Y, Dipple KM, Vilain E, Huang BL, Finlayson G, Therrell BL, Worley K,Deininger P, McCabe ER. AluY insertion (IVS4-52ins316alu) in the glycerol kinase gene from an individualwith benign glycerol kinase deficiency. Hum Mutat. 2000;15(4):316-23.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10737976">PMID:10737976</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	Glycerol kinase deficiency	intron:GK:NM:203391:4/20
0	chr3	123486135	123486136	1001609	0	-	CASR; RIP_Alu_chr3_123_02	TCGAGCTACCGCAACCACGAGCTGGA	GGATCCCGTGGAGCCTCCAAGGCTG	SINE	Alu	Ya4	gtcgggtcagcgtatcgctgcttttctgggcctccagggagttctggtgcgtagaattcctgtgggccatggcgttcttctgaggctcatcaaagctcag<br>tgagaaggtgaccgtgccgctgccaaagatgaccttctgcttgcatctgggctgctgctgagatcgttgctgctgtgggagggtcaggggctgctgctgc<br>tgctcttgctgggttagggccagcggctgctgctgcttctgcctctcgggctgtgggaatgggtcttcgctgttgctcttgctgctgatggaggaggagg<br>gggtggatcccgtggagcctccaaggctgctggaccgcttgcgggagacgttgctgcggcgcagcgtggcccgggcagccacctt<font color="green"><u>GAAAGCGTGAGCTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACTTGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTTAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCNNNNNNNNNN</font><font color="green"><u>GAAAGCG<br>TGAGCTGC</u></font>ggtgctgcaacgcacctcctcgatggtgttgcgggatggcttgaagagaatgatgtagatcttgttgaagaagatgcacgccagcaagccaa<br>agctggctgccaggatggcaatcacctctacggcagagacaaacttgccataggtgctggcataggctggaatgaaggagatccagacgatgaagaagat<br>gagcatgctgaaggtgatgaacttggcttcattgaagttctccggcagcttccgggacttgaaggcaaagaagaagcagatggcagccagcaggcaggtg<br>tagccgatcaggaagcccagggccatgagggagccctcgtggcacgtgatgaagatgatctcatcctccagctcctggttgcggtagcttgac	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Janicic N, Pausova Z, Cole DE, Hendy GN. Insertion of an Alu sequence in the Ca(2+)-sensing receptor gene in familialhypocalciuric hypercalcemia and neonatal severe hyperparathyroidism. Am J Hum Genet. 1995 Apr;56(4):880-6.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7717399">PMID:7717399</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	96	374	Familial hypocalciuric hypercalcemia	exon:CDS:CASR:NM_000388:7/7
0	chr5	112203766	112203767	1001610	0	+	APC; RIP_Alu_chr5_112_02	GTTTCTCCATACAGGTCACGG	CTGTAGGAATGGTATCTCG	SINE	Alu	Yb8	acttgatagttttgagagtcgttcgattgccagctccgttcagagtgaaccatgcagtggaatggtaagtggcattataagccccagtgatcttccagat<br>agccctggacaaaccatgccaccaagcagaagtaaaacacctccaccacctcctcaaacagctcaaaccaagcgagaagtacctaaaaataaagcaccta<br>ctgctgaaaagagagagagtggacctaagcaagctgcagtaaatgctgcagttcagagggtccaggttcttccagatgctgatactttattacattttgc<br>cacggaaagtactccagatggattttcttgttcatccagcctgagtgctctgagcctcgatgagccatttatacagaaagatgtggaattaa<font color="green"><u>GAATAATG<br></u></font><font color="red">CGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGCCGAGGCGGGTGGTCACGAGGTCAGGCGGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGTGCGGTGGCGGGCCTGTAGTCCCAGCTACTCGGGGGTGAGGCAGGAGAATGGCTGAACCCA<br>GGAAGCGACGTTGCATGTAGCCGAGATTGCGCCATTGTCGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAATAATG</u></font>cctccagttcaggaaaatgacaatgggaatgaaacagaatcagagcagcctaaagaatcaaatgaaaacc<br>aagagaaagaggcagaaaaaactattgattctgaaaaggacctattagatgattcagatgatgatgatattgaaatactagaagaatgtattatttctgc<br>catgccaacaaagtcatcacgtaaagcaaaaaagccagcccagactgcttcaaaattacctccacctgtggcaaggaaaccaagtcagctgcctgtgtac<br>aaacttctaccatcacaaaacaggttgcaaccccaaaagcatgttagttttacaccgggggatgatatgccacgggtgtattgtgttgaagggacaccta<br>taaacttttccacagctacatc	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Halling KC, Lazzaro CR, Honchel R, Bufill JA, Powell SM, Arndt CA, Lindor NM. Hereditary desmoid disease in a family with a germline Alu I repeat mutation ofthe APC gene. Hum Hered. 1999 Mar;49(2):97-102.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10077730">PMID:10077730</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	61	NA	NA	Hereditary desmoid disease	exon:CDS:APC:NM_000038:16/16
0	chrX	138471785	138471786	1001611	0	+	FIX; RIP_Alu_chrX_138_03	NA	NA	SINE	Alu	Ya3a1	aaaagcgaaatgtgattcgaattattcctcaccacaactacaatgcagctattaataagtacaaccatgacattgcccttctggaactggacgaaccctt<br>agtgctaaacagctacgttacacctatttgcattgctgacaaggaatacacgaacatcttcctcaaatttggatctggctatgtaagtggctggggaaga<br>gtcttccacaaagggagatcagctttagttcttcagtaccttagagttccacttgttgaccgagccacatgtcttcgatctacaaagttcaccatctata<br>acaacatgttctgtgctggcttccatgaaggaggtagagattcatgtcaaggagatagtgggggaccccatgttactgaagtggaa<font color="green"><u>GGGACCAGTTTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGATGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GGGACCAGTTTCTT</u></font>aactggaattattagctggggtgaagagtgtgcaatgaaaggcaaatatggaatatataccaaggt<br>atcccggtatgtcaactggattaaggaaaaaacaaagctcacttaatgaaagatggatttccaaggttaattcattggaattgaaaattaacagggcctc<br>tcactaactaatcactttcccatcttttgttagatttgaatatatacattctatgatcattgctttttctctttacaggggagaatttcatattttacct<br>gagcaaattgattagaaaatggaaccactagaggaatataatgtgttaggaaattacagtcatttctaagggcccagcccttgacaaaattgtgaagtta<br>aattctccactctgtccatc	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Li X, Scaringe WA, Hill KA, Roberts S, Mengos A, Careri D, Pinto MT, Kasper CK,Sommer SS. Frequency of recent retrotransposition events in the human factor IX gene. Hum Mutat. 2001 Jun;17(6):511-9.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11385709">PMID:11385709</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	Hemophilia B	exon:CDS:F9:NM_000133:8/8	
0	chr17	38499348	38499349	1001612	0	-	BRCA1; c.1739_1740insAlu; RIP_Alu_chr17_038_01	TTGTGAATTTTCTGAGACGG	GAATGCTATGCTTAGATTAGGGGTT	SINE	Alu	Sq	agagttcactccaaatcagtagagagtaatattgaagacaaaatatttgggaaaacctatcggaagaaggcaagcctccccaacttaagccatgtaactg<br>aaaatctaattataggagcatttgttactgagccacagataatacaagagcgtcccctcacaaataaattaaagcgtaaaaggagacctacatcaggcct<br>tcatcctgaggattttatcaagaaagcagatttggcagttcaaaagactcctgaaatgataaatcagggaactaaccaaacggagcagaatggtcaagtg<br>atgaatattactaatagtggtcatgagaataaaacaaaaggtgattctattcagaatgagaaaaatcctaacccaatagaatcactcgaaa<font color="green"><u>AAGAATCTG<br></u></font><font color="red">tgccaggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctaaggtcgagagatcgagaccaccctggccaacat<br>ggtgaaaccccgtctctaccaaaaatgcaaaaaaaaattagccaggcatggtggcaggtgcctgtaatcccagctacttgggaggctgaggcaggagaat<br>cgcttgaacccgggaggcggaggttgcggtgagccaagatcacgccactgcactccagcctgggcaaaaagagtgaaactctgtctcaNNNNNNNNNN</font><font color="green"><u>AA<br>GAATCTG</u></font>ctttcaaaacgaaagctgaacctataagcagcagtataagcaatatggaactcgaattaaatatccacaattcaaaagcacctaaaaagaata<br>ggctgaggaggaagtcttctaccaggcatattcatgcgcttgaactagtagtcagtagaaatctaagcccacctaattgtactgaattgcaaattgatag<br>ttgttctagcagtgaagagataaagaaaaaaaagtacaaccaaatgccagtcaggcacagcagaaacctacaactcatggaaggtaaagaacctgcaact<br>ggagccaagaagagtaacaagccaaatgaacagacaagtaaaagacatgacagcgatactttcccagagctgaagttaacaaatgcacctggttcttt	Other	<UL><LI>Teugels E, De Brakeleer S, Goelen G, Lissens W, Sermijn E, De Greve J. De novo Alu element insertions targeted to a sequence common to the BRCA1 andBRCA2 genes. Hum Mutat. 2005 Sep;26(3):284.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16088935">PMID:16088935</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	60	NA	NA	breast/ovarian cancer	exon:CDS:BRCA1:NM_007295:10/23
0	chr13	31791298	31791299	1001613	0	+	BRCA2; c.156_157insAlu; RIP_Alu_chr13_031_02	ATGCCTATTGGATCCAAAGAG	CACATTCATCAGCGTTTGCTTC	SINE	Alu	Ya5	ttaatgtgaatagtttttgattccgaaccatgaataataagaaaataaataaaatttaaatgaaaataaaagctaatatatacagcttttaataatatag<br>ttaaatgccatcttgtaacttttgtgaactcttgttacacctttctatagattcgcaagagaatggattaatgatcttgtttaattaatatgccttaaca<br>aaagtaatccatagtcaagatcttaagcatttttttccttatgatctttaactgttctgggtcacaaatttgtctgtcactggttaaaactaaggtggga<br>ttttttttttaaatagatttaggaccaataagtcttaattggtttgaagaactttcttcagaagctccaccctataattctgaacctgcag<font color="green"><u>AAGAATCTG<br></u></font><font color="red">TGCCGGGCTCGGTCGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGACACCATCCCGGCTGAAACGG<br>TGAAACCCCGTCTCTACTAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGCGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCCTCANNNNNNNNNN</font><font color="green"><u>AAGAATCT<br>G</u></font>aacataaaaacaacaattacgaaccaaacctatttaaaactccacaaaggaaaccatcttataatcagctggcttcaactccaataatattcaaagagc<br>aagggctgactctgccgctgtaccaatctcctgtaaaagaattagataaattcaaattagacttaggtaagtaatgcaatatggtagactggggagaact<br>acaaactaggaatttaggcaaacctgtgttaaaatcttagctcattcattaattgtgtcatgctgggcaaatcagtctctctggcctctttttcctcact<br>cgaaaaatggagacgatgaaaataatgtctcataggtttggattaaattaaataatgtaggtacttagtaaatgttctctttcatccctcct	Other	<UL><LI>Teugels E, De Brakeleer S, Goelen G, Lissens W, Sermijn E, De Greve J. De novo Alu element insertions targeted to a sequence common to the BRCA1 andBRCA2 genes. Hum Mutat. 2005 Sep;26(3):284.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16088935">PMID:16088935</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	59	NA	NA	Breast cancer	exon:CDS:BRCA2:NM_000059:3/27
0	chr1	195663266	195663267	1001614	0	-	CRB1; RIP_Alu_chr1_194_01	CTCCATGTTTGTCCGAACGC	TCTTGCTTGTCAGGTAGGC	SINE	Alu	Y	tttagtcttacatcttggatacagcctttgaagaatccaccattaagttcagtctcttgcttgtcaggtaggccaccaatgtagatgacatctccctttt<br>cgattttccacgtagaagcagaaataaatcctaggttttgtgaagactgatacagttcaattttatatggcttgattttcaaagatatcaagtggacatt<br>tccatcattaagaacaaattttactactaatttgggagagtttggagtcagcattgctagtctgccgcgctctagccagacacggatatattgataagtg<br>ctgttttccaaagctagaagtaagcctgatggttgaagcgttcggacaaacatggagaggctgatggtgtctccatagctctcatc<font color="green"><u>AAGAGTAAAGATGA<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AAGAGTAAAGATGA</u></font>cataaccagtggagtcatcctggccaaatctgcctgccacatactcttcaatgtcaaaatagaggaggaggagaaa<br>aaaaaagaaacatcttaaggctcaaaagacagaagggatggaagacgaaaattatacatttcacacacacacatgcacacaagcatacacactcatacat<br>agcttttaaagttcaggacaggtttattaaatagaataatgatttggcctctttctggacttctgagtttactttaaccctaaaataactatattttggt<br>ttgtagtttacacttcaggcatattgatcacaaaacagaccaaaaagatctctgcactgataaactaaagaatctcccctttgctgccctaaaatatggg<br>ccttaatggt	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID:15983781</a>.</LI><LI>den Hollander AI, ten Brink JB, de Kok YJ, van Soest S, van den Born LI, vanDriel MA, van de Pol DJ, Payne AM, Bhattacharya SS, Kellner U, Hoyng CB,Westerveld A, Brunner HG, Bleeker-Wagemakers EM, Deutman AF, Heckenlively JR,Cremers FP, Bergen AA. Mutations in a human homologue of Drosophila crumbs cause retinitis pigmentosa(RP12). Nat Genet. 1999 Oct;23(2):217-21.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10508521">PMID:10508521</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	60	NA	NA	Retinitis Pigmentosa	exon:CDS:CRB1:NM_201253:7/12
0	chrX	153783655	153783656	1001615	0	+	F8; RIP_Alu_chrX_153_01	ATATCCAGATGGAAGATCCCAC	GCTCCAGGCATTGATTGATCCG	SINE	Alu	Yb9	tcgagctttaccaagttgtgaaaatgaggtggtattttttttttgtcaattatttagagcttcaggtacaaagtgttcaaagcttcaagtatatctgccc<br>tactctgagaactctgatgatttctaccagcaatattcattttaaatttgataatgatgtaaacttgtatttatttcctgacacaagcaaccattccaga<br>aaggaagaaagctgtaaagaagtaggctgagtaggtagggaacctctgcccacattgctactcactattgctgtacaccagaaaaagtgtgctcatccca<br>gcatgtagatgctcgccaataaggcattccacccgccaaattccagctttggatggtaacatttccactgtctcaaaaacaccttat<font color="green"><u>AAAAACCAACAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGGTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCGAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAGAAAAAG</font><font color="green"><u>AAAAACCAACAGG</u></font>aacagaaattatttcttttcactaaaaaatgagcatgagatacattggtttatgcgaaatatcagag<br>tagacctaccaaatttggtagttccactacttttggacccctcaaatgcaaagtgcttgctacgtgacccttacagttgggggttgtggagattgagttc<br>tgaccactcccctccccccaggagatgagaaacagggtgactgaattctttgatggttgggacaggagaatgctactgcattatgattgacctacattcc<br>cagggtctttctgagcaaaaggtgtgtttcccattggccagatgtggactctgtgaaacagataagtcagggtgagttccctctggatccagtccactag<br>agctgcctacaagggtaaag	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID:15983781</a>.</LI><LI>Ganguly A, Dunbar T, Chen P, Godmilow L, Ganguly T. Exon skipping caused by an intronic insertion of a young Alu Yb9 element leadsto severe hemophilia A. Hum Genet. 2003 Sep;113(4):348-52. Epub 2003 Jul 12.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12884004">PMID:12884004</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	Hemophilia A	intron:F8:NM:000132:18/26
0	chr2	144874060	144874061	1001616	0	-	ZFHX1B; RIP_Alu_chr2_144_01	NA	NA	SINE	Alu	Ya5	aattctaatctaagtacctagaatgtagaggtaccccattgtgttccttttgtttggtttcacagattcttctcttggtagacaattgcaattgttatct<br>aatcaaggaaatgtaacggtaattttaattatcattttaggtgaaaaaccttacgagtgcccaaactgcaagaaacgtttctcccattctggttcctaca<br>gttcgcacatcagcagcaagaaatgtattggtttaatctctgtaaatggccgaatgagaaacaatatcaagacgggttcttcccctaattctgtttcttc<br>ttctcctactaattcagccattacccagttaagaaacaagttggagaatggaaaaccacttagtatgtctgaacagacaggcttactt<font color="green"><u>AAAATTAAAACA<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AAAATTAAAACA</u></font>gaaccactagacttcaatgactataaagttcttatggctacacacgggtttagtggcactagtccctttatgaatggt<br>gggcttggagccaccagccctttaggagttcatccatctgctcagagtccaatgcagcacttaggtgtagggatggaagcccctttacttgggtttccca<br>ccatgaatagtaatttaagtgaggtacaaaaggttctacagattgtggacaatactgtttccaggcaaaaaatggactgcaaggctgaagaaatttcaaa<br>gttgaaaggttatcacatgaaggatccatgctctcaacctgaggaacaaggagttacttctcctaatattccgcctgtcggtcttccggtagtgagtcat<br>aatggtgcca	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID:15983781</a>.</LI><LI>Ishihara N, Yamada K, Yamada Y, Miura K, Kato J, Kuwabara N, Hara Y, KobayashiY, Hoshino K, Nomura Y, Mimaki M, Ohya K, Matsushima M, Nitta H, Tanaka K,Segawa M, Ohki T, Ezoe T, Kumagai T, Onuma A, Kuroda T, Yoneda M, Yamanaka T,Saeki M, Segawa M, Saji T, Nagaya M, Wakamatsu N. Clinical and molecular analysis of Mowat-Wilson syndrome associated with ZFHX1Bmutations and deletions at 2q22-q24.1. J Med Genet. 2004 May;41(5):387-93.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15121779">PMID:15121779</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	Mowat-Wilson syndrome	exon:CDS:ZEB2:NM_014795:8/10	
0	chrX	152657859	152657860	1001617	0	+	ABCD1; RIP_Alu_chrX_152_01	TGGCCTTATTCACCCAAGGCTCCAAG	GGATGGGGTCCAGCGTCCACAG	SINE	Alu	Yb9	attgttgttgttaccgtgaacttcactgactccaggcccctggcctcctccctgcacacagcccgcctccagcctggccggcattttcccaaagtaggca<br>tttcctagctccagcgaggaccatggagtcagtgaattgaggagcctgaggtccatgatgcagagcccaggggccactgtggcatctctgggccactctg<br>gcacctggggaggcagtggggtctgtactgtcagtctagagacataaagaaagtgctttttgggccgggcgtggtcgctcatgcctgtcatcccagcact<br>ttgggaggccgaggtgggcagatcgcttaagcccaggagttcaagaccagcctgggcaacatggcaaaccccgtctctacagaaatttttaaaaatacac<br><font color="green"><u>nnnnn</u></font><font color="red">GGAGAATGGCGTGAACCCAGGAAGCGGAGCTTGCAGTGCGCCGAGCTTGCGCCATGCAGTCCGCATCCGGCCTGGGCAACAGAGCGAGACTCCGT<br>CTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>nnnnn</u></font>aaataagccaagtgtggtggcggtgcctgtagttctagccacttgaaaaaaaaggctaaagtgagagggt<br>ctcttgagcccaggaggttgagcctgcagtgagccatgatcccaccactgcactccagcctgggcaacagagcaaggccccgtctcaaaaagaaaagaaa<br>gaaactgccttttgtccccagtgactcaggaggccaaggtgagagagtcgcttgaggccaagagtttgagaccagcctgagtaacatagcaagaccctgt<br>ctctaaaacaacatttaaaaattagccaggcatggtggcgtgcatctgtaggcccagctactcaggaggctgaggtgggaggatcacttgagcccaggag<br>ttggagactgcggtgagctgtgatcatacc	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID:15983781</a>.</LI><LI>Kutsche K, Ressler B, Katzera HG, Orth U, Gillessen-Kaesbach G, Morlot S,Schwinger E, Gal A. Characterization of breakpoint sequences of five rearrangements in L1CAM andABCD1 (ALD) genes. Hum Mutat. 2002 May;19(5):526-35.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11968085">PMID:11968085</a>.</LI></UL>	E:Insertion-specific detection:PCR	 TSD unavailable	NA	NA	NA	Adrenoleukodystrophy	intron:ABCD1:NM:000033:5/10
0	chr5	112198789	112198790	1001618	0	-	APC; RIP_Alu_chr5_112_03	CAACTCTGGGCCAGTTGC	CCATCCTTCTTACGAGTGC	SINE	Alu	Yb9	tcaaaaaaaaaaaaaaaaaattattattatggatactaagacatcattagaaaaatgtgaacctttatattctctggatcacgctcatagtttttgtctt<br>gttctaaattttgttttcatactcttttatactatactaatagaaatggattattttgttacaatatttgtgactattttttcctccacctatgggctac<br>acctctcaactataatttgcttaatttagtctcctctataatactataaactgttattacattaagtacactaatgagttaaactaagagttagtagtta<br>tcttttcacagtaataaatatattttggcttaaaactttcatgattatataaaacattgcttacaattaggtctttttgagagtatgaattctgtacttt<br><font color="green"><u>nnnnn</u></font><font color="red">GGCGTGAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>nnnnn</u></font>aaaagtaata<br>taaaactctatatatacctgtggtcctcatttgtagctatcaagctggacacattccgtaatatcccacctccactttcaataatggctaaagtgtttgt<br>ctggctccggtaagtaagagtgccaaccaaaaatgcaagtgcaccatctacagcacatatatcagctttattctcagtgcaatgtgctgacaaattccat<br>aaggcactcaatacgcttttgagggttgattcctagtaagaaacagaatatgggtcatctaattagagttggaatttgtctctcattaacttctatgtta<br>ctgatattgaataaaagctattttttaatctatcctattgcccgtccctcactggtaaattaagaactttccatttagaaaaatgttcat	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID:15983781</a>.</LI><LI>Su LK, Steinbach G, Sawyer JC, Hindi M, Ward PA, Lynch PM. Genomic rearrangements of the APC tumor-suppressor gene in familial adenomatouspolyposis. Hum Genet. 2000 Jan;106(1):101-7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10982189">PMID:10982189</a>.</LI></UL>	E:Insertion-specific detection:PCR	 TSD unavailable	60	NA	NA	Familial Adenomatous Polyposis	intron:APC:NM:000038:15/16
0	chrX	153811533	153811534	1001619	0	+	F8; RIP_Alu_chrX_153_02	NA	NA	SINE	Alu	NA	agtctatctgtgtgagggtgctcggggtcaaatgtttcatgtttttggaccactgggttgaggtgtcatccacaattatccttttttcaagttctgtttc<br>ttctagtgggagtctgaattgtttcaaagctctcttactacgttgcgtgacaaaattctgctggcttgtattaggagatatccttgtggtgcatgcatat<br>ttctctacaatttgcttggtttgatttcccaagccttccaagttttcttcctcccctttttttgagaaatgagctgtgtgtttctttgttctatttgttg<br>aatcatttaatgacctaaaatcttgaagtactggagcatatgccccgtcatatgaaccttctacattttgcctagtgctcagtaagaaaaggttcttcat<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>gaaattcttagtgccagtcactgtatgtatctgaggcaaaactacattctcttggattaatgtttccttcttttctattt<br>cttcctgaatttttttttcttgattgtgtgtattattttcatgtaaattatccaagttagtaagaaataggtttctgctgcttggaaaaaccatctcttt<br>gagtcctacgtcctttgtaaattcaccctttcctactaccactttgtttttctcagacaagaaattctgaccttccacagatttttctggtcctaaggat<br>actaattgctttggactggggccttgcccagagttcagagagttctttccatgagtcctttgtatccaccttgctgattctggcaagaatagcatcttaa<br>agaacgacatatctggattt	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID:15983781</a>.</LI><LI>Sukarova E, Dimovski AJ, Tchacarova P, Petkov GH, Efremov GD. An Alu insert as the cause of a severe form of hemophilia A. Acta Haematol. 2001;106(3):126-9.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11713379">PMID:11713379</a>.</LI></UL>	 	 TSD unavailable	NA	NA	NA	Haemophilia	exon:CDS:F8:NM_000132:14/26	
0	chr10	90763030	90763031	1001620	0	-	TNFRSF6; RIP_Alu_chr10_090_01	NA	NA	SINE	Alu	NA	taatacctgagtctacagtacactttaacctctagatctttttaggcaggagttctgtaatacatctagctgattatgaaggaaaagtttcttaagcctc<br>agactattgtgtcttattgttacttgattatttttaactatgagtattcattataaatttaaacaaactgcctgataaatgctttatgctgagcaggtag<br>aattgtatgagaaataacaagatcccataatatgtcactgaaattagtaacattattttactctgaaattggcctattactctaaaggatgccatctcta<br>tgaaataaaatgataaaagccttaccagataaatttattgccactgtttcctagaaagcaaaaaatggaagcagagaaagaca<font color="green"><u>AGAATATTCTAAATGTG<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AGAATATTCTAAATGTG</u></font>aacttctaatttttccttaattcagaaagaagtacaatcagttgcttgatgtataaaattaggaagctagatt<br>aagtgattaagaaggttacttttaccattcaatttttattctgaaaggttccggccttgccagaaactaagcaatattgtcttagtttttaaaggcaaga<br>aacctaaagaattcataaaataggttgaggttatttttcatatagacttattaaaataaataataaatataactactctaaaattttcttccctgtaact<br>attcttattcttaataccagaaaatggctcaaattgaaattttttttaccatattaatttaaagaatcctaactcccactgagccctggccccaaataag<br>aaaataattc	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID:15983781</a>.</LI><LI>Tighe PJ, Stevens SE, Dempsey S, Le Deist F, Rieux-Laucat F, Edgar JD. Inactivation of the Fas gene by Alu insertion: retrotransposition in an introncausing splicing variation and autoimmune lymphoproliferative syndrome. Genes Immun. 2002 Oct;3 Suppl 1:S66-70.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12215906">PMID:12215906</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	ALPS	intron:FAS:NM:152877:5/7	
0	chrX	138458220	138458221	1001621	0	+	F9;F9; RIP_Alu_chrX_138_04	NA;NA	NA;NA	SINE	Alu	NA	aacaggctcatttactttgtgaaaacttacactaaaattgtgtgtattttttgaatatatgttatacattaataaatagggtttttaaacctgtagttca<br>taatttagtgaaagtagaatatccaaacatttagttttaaaccaatcaattatagtgctaccatcatttttatgcattattgagaagtttattttacctt<br>tctttccactcttatttcaaggctccaaaatttctctccccaacgtatattgggggcaacatgaatgcccccaatgtatatttgacccatacatgagtca<br>gtagttccatgtactttttagaaatgcatgttaaatgatgctgttactgtctattttgcttcttttagatgtaacatgtaacatt<font color="green"><u>AAGAATGGCAGATGC<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AAGAATGGCAGATGC</u></font>gagcagttttgtaaaaatagtgctgataacaaggtggtttgctcctgtactgagggatatcgacttgcagaaaac<br>cagaagtcctgtgaaccagcaggtcataatctgaataagattttttaaagaaaatctgtatctgaaacttcagcattttaacaaacctacataattttaa<br>ttcctacttgaatctgcttccttttgaaatcatagaaaatatcagtagcttgaattagaccaattaattttctagattgcatcatattttaaatataaac<br>tatgtaatcatctacaacctgaattctttctgtgtccaatttgtccaatttttttctctaacatttatatcacaaagcaattaatttgtgtgatttctgc<br>atatgtattt	Other;Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID:15983781</a>.</LI><LI>Vidaud D, Vidaud M, Bahnak BR, Siguret V, Gispert Sanchez S, Laurian Y, Meyer D,Goossens M, Lavergne JM. Haemophilia B due to a de novo insertion of a human-specific Alu subfamilymember within the coding region of the factor IX gene. Eur J Hum Genet. 1993;1(1):30-6.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8069649">PMID:8069649</a>.</LI><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID:15983781</a>.</LI></UL>	 	NA;NA	NA;NA	NA;NA	NA;NA	Haemophilia B;Haemophilia B	exon:CDS:F9:NM_000133:5/8	
0	chr1	8369222	8369223	1001622	0	-	1104685352214	TTTCTGAAGGCAGTGAACTGAA	AACACAAAGAATTTGGGCATTT	SINE	Alu	AluYa5	agctgggattttgaatgagatagtgttgaatccatttgagtacgttccctttatccgtcttttttctatttgtgaagtcctttcaagtcatatttttatc<br>ctctttcctttcctcacactacttctgcacccaaagttgcagcttttcccctgagagaatatatagtagatttcaaaacctttgtcttctgtgttaactc<br>tttgaggtaaactttacttgaaaatccaacacaaagaatttgggcatttgaggagtttgtatttccctggttactaatcatattgggcatcctataatga<br>gtttattggctgtttgtgtttctttttcatgaagggcctgtgtaagtcttttgcttatttttcaatggattgtccttttctttttcatttgt<font color="green"><u>AAGAGTTC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAGTTC</u></font>agatattcatcttaaataatgtatgttcagttcactgccttcagaaaggaagctctctggctgtttgggattctgtcttggct<br>gggtttcagagctcaggcccagggagtggaaacccttatttgtgtggctttactgtctttatgagacagggccacacaagctcataggatctcaggaatg<br>ttctcattattgataatgcccaatgtgggaagaatctcttggcttgggatgagaggggttcctaagaagttctcttggctctattttattcttatgattt<br>atataggagcaatggtaattttttaatttttttatttttggtctctctgattctaaagaaaaatttggaggagagaatagttaactgtagtcctacaagt<br>tttcttaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	537	221	NA	intron:RERE:NM:012102:13/24
0	chr1	64730667	64730668	1001623	0	-	1104685764890	TTGGCCTAGAGAGATCTGAAGC	GGCCTTTATTCTGATAGCATGG	SINE	Alu	AluYb8	tattaaactaggctaagaaaaaatgaacctgataatcacctttgtgccagaagacaaaaataactggacaggaagcccaggcagtcccagtggcggtgct<br>gtcttttacactgacgttaactctaacgatcagcggagtaaccgcacagcgctgctgggcacctggagcttattgtttccgtgtggcatatgatgaagta<br>tcagaacggggaggagtatatctccaagaaggaatgtgatgagcagaaaaactcatcctgtgagattggcctagagagatctgaagccaggagccatttg<br>gtcttgtccaatggcattaatgtacccacagacaaaggccaaaggggacatggaggccagagctgctggtcaacggcttgttt<font color="green"><u>CCCCCTATTGTTTTCTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGCCCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CCCCCTATTGTTTTCTT</u></font>acccaactccatgctatcagaataaaggccatccttccccgtatt<br>tttctcaagttatacaagtgccgttattcttcaagcaacaaagaattccactagccttttgctaaggataaaacatttccaaaatataagttgtttaaac<br>tgcaggtatagaataatttcttcaactgtcttctttttcccaaatgaataatgctacctagatgaaaacaatttttttcttcaccttttattccaaattt<br>ctttttttaaaaaaagcttccatcttttaaaattcaaacagaaatactgagggaagttccagtttcaaaccatcttttgtcaagaaaaaaaactagtgaa<br>aggtactttcaggaaatcaagtacagtatatgatttca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	520	166	NA	intron:CACHD1:NM:020925:1/27
0	chr1	65828530	65828531	1001624	0	+	1104685764582	NA	NA	SINE	Alu	AluYg6	ttcaaaatatgttcttcagtttcaaagttgttttggctattctagattctttgcatttccatatgaatttttagattcatcttgtcaatttgtgtaaaat<br>agcctgttgagattgtgagtagcattgcattaaatctgtagataaatttgaggagagctggcatattaaccatattgagtcttctgacccataagcacag<br>tacatctctcattttagttaggtcttaataatttccgtcaacagcatttcatagttttcaatgtgcagatcctaaacatcttttgtcaaatacattacaa<br>agtatttctatttttgatgttattgtaaatgatattttaaaataatttctgtttcatcagttatccaatataaattcagtatcat<font color="green"><u>AATATGAATAATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AATATGAATAATTTT</u></font>ccttattatccttttaatatctgtagactgtgtagcaatatcgtgctttcagtttttatattcttaatttgtgacttctg<br>tggtttttcctggtcagtctgtgatatggcttggccatgttcccacctaaatctcatcttgtagttcccataatccccaagtgtcatgggaggaacccag<br>tgggaggtaatcatgggggtggttacctccatgctgttcttcactattatggcggttacctccatgataatgagtgagttctcatgagagctgatggttt<br>tataaggggcttttccccacattcactctgtacttcttgctgccaccatgtttgcatgtccttccaccatgatattctaagtttcctgaggcctcctcag<br>ccctg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LEPR:NM:002303:5/20	
0	chr1	69834259	69834260	1001625	0	+	1104685763673	GGTATCATCGTCCTGTGAGTGA	ATCCCAGCATTTACCTCTTGAA	SINE	Alu	AluYb8	agtactaactttacaaccttactttccctgccttggctttcctaactgtgctaatggacacaaccacacttagtaaagtttaacttgtactgacttcaca<br>gcatgtcagatgtggtgaaatgatgcatggcattcctcatttcgacaacatttcagtctgccagatggcacttcaataatatattacggtgtattacaaa<br>gactgtacagatatcccagcatttacctcttgaaaatacttaactacaattataccatttaagtctccagtcacttttccttaacttccttagcttttac<br>aataaagcacatatttttattaaaaaacatttaataacatacccagtgagtgattgcctactcgtagactgttaaactgtctcat<font color="green"><u>CACAAGCTACTTTAT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>ATAAA</font><font color="green"><u>CACAAGCTACTTTAT</u></font>gatttgatgtgagaatttaattactttttaagtgaatcttttatgcaattatccttaatcactcacaggacgatgatacc<br>tgtgagtctgcatctgcagaaggactgcccaggtgctttaaagcataagacttcttgttttctgttcacaggcaagtccattataagaagagcaccagcg<br>ttattctaaccagtttaagaagattatctcctttgctctttgcagcaatactagtgtcactaccctttttggataaaaagttaaaaatccggagaggtta<br>gataacttgatcaaggtcacacagcatactaagtgattaaaccggaacaaaaccctggaaatttggctccagagcctttattgttaatgactgtgcaaca<br>gctgt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	588	269	NA	intergenic
0	chr1	52222033	52222034	1001626	0	+	1104685768192	NA	NA	SINE	Alu	AluY	tttagctacacaaatacttaccactgtgttacaattgcctgctacattcaatacagtaacatgctgtacaagtttgcagcctaggagcaataggctatct<br>attccatatagactatgtgtatagtaagctataccatataccatataggtttgtgtaagtatactctatgatgttcatacaactatgaaatcggctaatg<br>acacatccctcagaacatatccttgtcattagcaatgcaagactgtacttaaatactacaaaaatttagtagtaccaaaagtactacaaaaatatgagat<br>tttgaggccaggtgccgtggctcaggcccataatcccaggactttgtgaggccgaggcaggcggatcatttgagctcaggagttt<font color="green"><u>GGCCAGGCTGATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGGGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>GGCCAGGCTGATCTT</u></font>acatggtgaaatccagtctctactaaaaatataaaaattagccaggtgtggtggcgcacacctgtaattc<br>cagctagtcaggaggctgaagcacaagaattgcttgaacccaggaggcggaggctgcagtgagtcaagattgcacaactacactccagtctgggtgacag<br>agcaagacactgtctcaaaaaaaaagaaaagaaagtaagggctgggcgcggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggtgaat<br>cacgaggtcaggagttcgagaccagtctggccaacatggtgaaaccccatctctactaaaaatacaaaaaattcgctgggcgtggtggtggccgcctgta<br>atcccagctactctg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RAB3B:NM:002867:1/5	
0	chr1	46069039	46069040	1001627	0	+	1104685509087	TGCCTATCACACAAAGCCTAGA	TGGCACATCATGGGTACTTAAA	SINE	Alu	AluYa5	ggccaggctggtctcaaactcctgacctcatgatccacccacctcagcctcccaaagtgttgggattacaggcttgagccactgtgcctggcccaattaa<br>gtctattttgattgccctctcatgctgtcagtgtcactggtactaattgtatagtgagggtcaaggaaaagattctgtaaggttgtaacttcaatgagta<br>aattttcctgggaaagaacattctttttatagaaatgattctaaatctggtacagttgtgctgctttggtttacagctctgtggtatacatatttagtac<br>atgaggacagggaacttgtttggcacatcatgggtacttaaagtatatgtata<font color="green"><u>AGTGCAGGAATTAGAGACGTAAGCCACTGCACCCGGCCCTCATTCTT<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTTAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGC<br>GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAACAATAATAAAAAAAAAAAAAA</font><font color="green"><u>AGTGCAGGAATTAGAGACGTAAGCCACTGCACCC<br>GGCCCTCATTCTT</u></font>tgagagtctgaggcaggaggatcgcttgagcccaggagttcaagactagcctgggcaacatagttgagaccttgtctatacaaataa<br>taataatcataaaaaaaaaattagccgaggatggtggggtgtgcctgtagtcccagctactcagaaggctgaggtgggataatcgcttgagcctgagcag<br>ttgaagctgtagtgagttgtgattgtgccaccacactctggcgacagagtgagaccttgtctggaaaaaaaaaaaaaaaaaagccttttgtttgtctagg<br>ctttgtgtgataggcagggccttacaaaattaaagctgtgtagcctgggcaggttgctttgtttct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	696	384	NA	intron:MAST2:NM:015112:3/29
0	chr1	46451635	46451636	1001628	0	-	1104685508952	NA	NA	SINE	Alu	AluYb8	aggtatttcatgatatttagtactttttaaagtttttgtagagacaaagtctcgctacgttgtccaggctggagtgcagtggcatgatcatagctcactg<br>tagcctcaaactcccaggctcaaactcctcacctcagcctcccagagtgctgtgattacaggcgtaagccattgtgcctggccgtatttagtgtattttt<br>atttagtccctcttgtcctcaactatgctcagtgtcttttaatctagagaccttctgttctattctccatatataaagtcatttgtcacgtaacaatggg<br>gatatgcttagagaaatacaccagcaggaggttttactgccgtgcaaatatgacagggtaaatgcacaaactagatgacattt<font color="green"><u>AAGTATATAAATTTTTT<br></u></font><font color="red">TGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTATATAAATTTTTT</u></font>tttaaaatatggaaaacaaaatgtcccagcacaattactgaatatcaatccctactt<br>gatctgctatgccaatatcaagtgccatatatcatatttgtgtatatgctgtgttataatcttatgaaatcactatggtatatgctgttcatcgaaacat<br>cgtatgttttggtcgtatgatgactgaaacatcatataaatatttgtgtatgtgtacacacttatatacacataaatgtttatatatatgtgcatatata<br>cacacatgataaatgtttatttgacatatgtagtctatcattgatcaaaatgtttatatggtaatcccagcactttgggaagctgaggaggacagatcac<br>tagaggtcaggagatcgagaccatcc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C1orf190:NM:001013615:1/2	
0	chr1	100766810	100766811	1001629	0	+	1104685456225	CCTGCATTAGAGTTAAGCAGCA	AGTGACGTAGAAACAGGGTGGT	SINE	Alu	AluYb9	caagcacagggagtttagtttggtttatgctgtttgagggatatctaagagatgtctgataagcagcagaaatggggtgatgactgtacctctgaaattc<br>cacagcagaggcttctaacacatatttggccattgctttcactgaggctcagaaggttgtgcccagtatccagagaaggatttcaaaattttcaaggact<br>atagctgagaaagggttttctggaaattgagagtgccaatttgctgtgaagcagggagaagacaggctatttctgagatacagcaaatagaagtaatttt<br>ttttcaccatcaatgatgacctcagtgacgtagaaacagggtggtagctcctggttttcttgtttcttaatcaatataatttagacttt<font color="green"><u>CATGAAATTTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CATGAAATTTT</u></font>acaatatcttagatatttcttagttatgttgtgattttgtcaatgctgcttaactctaatg<br>caggatgataattgtggctaattgcctaaaagcatatgaactttttttcccatcagtgttatatgtgagagaacacacacacacacacacacacacccct<br>ctttaatatgaatttgatgtcctcacttaaattacatgaaataattcctaaatgcttgaaaatacaaaaccctcctcatctagttcctatctcaatcaga<br>caaatattttaaagcagattcaaaaaatagactatactaaacttcttactggaaaaaaagtcacttctggacagagaccaagccaaagtaattttagctc<br>aaattggttttcctggaaaaactggaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	481	143	NA	intergenic
0	chr1	104376005	104376006	1001630	0	-	1104685271869	AATTCAGGTCAAAACCCAGAGA	CTCGTGTCTACAGGCTCCTTTT	SINE	Alu	AluYa5	taattcttttgttgaatgtaacattgtatacctgaccttataaaaataataagtaaaaatatgactcttgtactttcttaatttattttccattgtggac<br>caaacaaacttcaattcatgtgaagattttgtgttaatcacctcagctaataagtctataaataaaattattaaaaagtaatgattttaatatttatatt<br>ttgtaatagctaaaatctgaatgcaaatgtgaagccagagacagaggaccaaaactcttggaaatctctggtacaggtatgaaatgagagctcatgaaga<br>agtattcttgggctcgttactgagggatgcaattcaggtcaaaacccagagagacactctatacccatgatgctttatagttaataa<font color="green"><u>TGTAATTTTTTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA</font><font color="green"><u>TGTAATTTTT<br>TTT</u></font>agggatcaaaaagcaacaaactacttttaataggagctttgtgtccagggtgcagctggagagtcaaaaggagcctgtagacacgagatcagctcca<br>tatgaattcataaaacagcaccagcatcagccagagactgagtttctaagtcgacacagttatgcttagccaccttcttggtagttaacctgagatagct<br>gtgaggaacacccagtagacaatgattttattcaatagagaggtttttttaaaaaaattaaaaattatgattaaattagttcactgctgaaaaatggaaa<br>tgatataggatcaagtaatgattcataggccatagaaactttatcagtatttgtgtatgtagccaaaatatacaccaaagtaacacacca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	460	158	NA	intergenic
0	chr1	104940174	104940175	1001631	0	-	1104685271665	NA	NA	SINE	Alu	AluYb8	aggagaagaagctatgttaataatggagtatatttggataggtccctgaaaggcaacatagagtaaagaagtcataaaagtaaagaagtcactttgaatc<br>ttgtcaattcatgactgaattaatgtgatccaatccaagcctatctgtcttatgggataaaaagataaatacttttgggggaagttaacaccatccagag<br>aattaaattttctttacagtatttctattgcaatgtctacaatgcaatttaaaaaataatgaagcatacaaggaagcgagggctgatgagatattaatag<br>aaaaaataaaagaaacaatgaaaacagacctataagagatcaaatagtaatcacacatttgacttttaaaaaggtgttattaataatagga<font color="green"><u>CCATTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACGAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCGGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CCATTTTTT</u></font>cacataactaaaaaaatgaaaaagaattaaatggaaataaagggtttaatagtggataagaggaagctgaag<br>gagtaattgctaacctgtaatatgggtcaaaagaaaattgcctgactgaagcaaatatataaaataatagaaagttagaagaataagacatataagtatg<br>ctgaacaggaaaaacggtgcataattggtgcccaaggaaaagaagaataagtagagaagaacaaatatttcagatgataatgattgagatatttttaaaa<br>ctgatgatatctagccacagattcaagagaatctttgatcttcaagtagaacaaatacaaaacaaaaacaattttaaaaatatacatatataattgtaaa<br>gtctaaaaaccaaaggcaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	105032635	105032636	1001632	0	-	1104685271641	GCTCATGATGTCTAAGCAGTCTC	TGGCATGAGGTACTATGAGGTG	SINE	Alu	AluY	tttttcagtttgatatttctactaaaatttctgtttgactatccagagtacctggtactataaacttgagtctctccgcacagaaagcagatactatttt<br>tgcatacagtaggacaagataaaggtaaaagaggaactagttgagtgtttatgctagatgctgtgttatgtgttttataaacatcatgaactagagagat<br>agctcatgatgtctaagcagtctctgtttctacttatgaggtaatacagaaaaatataacatgctgtttaaaattatggatcatgggaacagacttcctg<br>ggtttaaatcatagctatacttctactactactagtgatgttactgggtttaaatcatagccctgcctctattactaccatgtgacattatt<font color="green"><u>AGTATTTT<br></u></font><font color="red">TCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGA<br>CTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGTATTTT</u></font>gttaccttgataaagtgccttaatttttttttgcttcagtttcatcatttccaacatacaggt<br>ggtaattgcacctataccacaagattaaatcaattaagtgtgtttgtgtggggggatgcattttaaagagggcctgacaaatgcaataggtaagtgtttc<br>ctatgaatattacttttgttttctcttaatgtaagcatacctgtacatacttatccttggttttatttttgtttcacctcatagtacctcatgccagagc<br>tgatttttggagtctttatcaattatttgttctggcttgaaaataaaaactgggttaattcatttcacagtacactgaataagaaaacacctaaggattg<br>ttgtagaataaaggatacctaacagtatg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	595	459	NA	intergenic
0	chr1	113192047	113192048	1001633	0	-	1104685712690	NA	NA	SINE	Alu	AluY	agtcgcatcagtcacattatttaaattagcgccaaactttgtcttcagtaactcacttcaagatgcaggcctggctgggtgcggtagctcacgtctgtaa<br>tcccagcactttgggaggctgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaatcccgtc<font color="green"><u>GCGGTAGCTCACGTCT<br>GTAATCCCAGCACTTTCGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAATCCCGTCTCCACTAAAAAT<br>ACAAAACATTAGCTGGGTGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAG<br>TGAGCCGAGATCATGCCACTGCACTCCAACCTGGGCCACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAGATGCAGGCCTTTGGCCAG<br>GCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCGGAGGTGGGCAGATCACGAGGTCAAGAGATAGAGATCATCCTGGCTAACACGGTGAAAC<br>CCCGTCTCTACTAAAAATACAAAAAAATAGCCAGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCC<br>AGGAGGCGGAGGTTGCGGTGAGCCGAGATCACGCCACTGCATTCCAGCCTGGGCGACAGAGCCAGACTCCCTCTCAAAAAAAAAAAAAAAAAAAAAAAAA<br></u></font><font color="red">CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAATCCC<br>GTCTCCACTAAAAATACAAAACATTAGCTGGGTGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGG<br>AGGCAGAGCTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAACCTGGGCCACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GCG<br>GTAGCTCACGTCTGTAATCCCAGCACTTTCGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAATCCCGT<br>CTCCACTAAAAATACAAAACATTAGCTGGGTGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAG<br>GCAGAGCTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAACCTGGGCCACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAGATGCA<br>GGCCTTTGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCGGAGGTGGGCAGATCACGAGGTCAAGAGATAGAGATCATCCTGGCT<br>AACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATAGCCAGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCAGGAGGCGGAGGTTGCGGTGAGCCGAGATCACGCCACTGCATTCCAGCCTGGGCGACAGAGCCAGACTCCCTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</u></font>cccaggaggcggaggttgcggtgagccgagatcacgccactgcattccagcctgggcgacagagccagactccctctcaaaaaaaaa<br>aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagatgcaggcttttgtcgcatcaatttcagcaacccgtgtagaggtcgatgaatttcagatttggaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	76629231	76629232	1001634	0	-	1104685762061	AGCTTTTCACACACAGGAACTG	GGCACATTATTTATGCTCCTCA	SINE	Alu	AluYa5	attagaagcttttcacacacaggaactgcctcagtgcaagagctgaaatgactgtcatcataataacaactatattgatcacttaaaagattaataagca<br>ttttgggccaggcgaggtggctcaagcctgtaatcctagcactttgggaggccaagatgggcggatcacgaggtcatgagatcgagaccatcctggctaa<br>cacggtgaaactccatctctactaaaaatacaaaaacattagccttgcgtggtggtgggcgcccgtagtcccagctactcgggaggctgaggcaggagaa<br>tggcgtgatcccgggaggtggagcgtgcagtgagccaagatcgtgccactgcactctagcctgggcgacagtgcgagactccatct<font color="green"><u>GTATTTTTTTTTTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>GTATTTTTTTTTTT</u></font>atatatatatataagcattttaataattggaggtaaaatgatttgaggagcataaataatgtgccattttg<br>ttttacatatgaagttatagcattatatttcccatgtaaaaacctaaaacatttctaaccacaaaacaatttacaggttcaacctcttcttgtcttccta<br>gaggacatgtgcaagagaaaacagtttattttctagacaggtttctgttttcttggcacacaaactcctggcactgagagctgtgaggtacacaatggtt<br>tggggctggcaagctctgagcatgtcagttcccagcagccaggctcctctgaatcctgccaaagccaccaagtaacacttagtctttggagccaaaagcc<br>cttgggagcaaacca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	788	460	NA	intron:ST6GALNAC3:NM:001160011:2/4
0	chr1	95115290	95115291	1001635	0	+	1104685457522	GGTTGACTTTGCTCTCTTTGCT	AAGTGGTCAGAGAAGAGCCTTG	SINE	Alu	AluYa5	atgatactgtatcatgtctctcaacctgatttctaactttgagttctcgtgccactggacgggtggaaaacttaatttgttattcttgagctatccctcc<br>tcggagttatatgaggtttcaggtgtccctagacattaacagatataggttgcccttgagacatcatcctcccatctttatggccactcaaaccctgctt<br>gggaaataggaatcttttacctatggtcacctatggtcctatctgccttgatgtgctagcactaggtgactacctgtcctggtcacctagaagccccatg<br>tctctggtaccccctcactcccaggcaaaccaggaccctggaagtggtcagagaagagccttgccacttctccaagctgtgtttaa<font color="green"><u>CCCCGACCTTTTTT<br></u></font><font color="red">TGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAACGGTGAAACCCCGTCTCTACTAAA<br>AATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTATAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTG<br>CAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCTAAGAAAAAGAAAAGAAAAACA</font><font color="green"><u>CCCCGACCTTTTTT</u></font>caga<br>cctggacttcagtcagacccatagactttgttctcttcccagcccagagagtgtcattttctaatgtggggctggaggaaacctgcacactcgcctgctg<br>ctccaaggtgtttggtctatattgggaaactcttttcttcaccttttcccctggtaggtaagggcttaaagagcctaaattttggaaaacaaaagccagt<br>gagaattgaagactggatgtcttcttgcctccactccccacctggccccctaaccttaactgggggaatgagcacagagcccgagtcctgcttgaatggg<br>gaatgtggagagaagagaaaggagaaaatacacaaggcggagaaacagaagcaaagagagcaaagtcaaccatcatacatgt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	730	443	NA	intron:SLC44A3:NM:001114106:12/15
0	chr1	77406916	77406917	1001636	0	+	1104685761921	CTTCCCCTTTTACCAAGCCTAC	GGAAGGAAAATGTTTGGCCTAT	SINE	Alu	AluYa5	tcatatattatgcatatctacatttaaaaagtagaaaatctatccagttttcttgttcaactatttcctagaacatgagtgtataaattgtatgtataca<br>catttgtgcgtgtgtaaactgtttgatttacatttttcctgcaagacagcaaaatgctaattgttttaacaggaattcttgttggccaacaaggaaggaa<br>aatgtttggcctatattttcctaaaatatgactaaataaacaagtaaaaggttaaacatacatatttaattcaatgagccaacatttttgagtgcctaac<br>accaggctctaggtacttgccagctatatgatacatgagacacaggccctcttagcttacagtctaggaggagatagatatgctttt<font color="green"><u>TTGAAGCAATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>TTGAAGCAATTTT</u></font>agtggtctaggaacacacaggaaattgtgtcttacttttggtaggcttggtaaaaggggaaggattatctaagaagacttcat<br>aaaagaagacttcaaatattaagcgtattcacaatcttttatatttaaaatgaactttcaaagggagaaaatagagtataataccattttttacatttac<br>atttttatttcttatcacatattcataaaaaacactggaagtatattgaaactatagtcactatagtttttccacaattaatacaattactaaaactaat<br>aaacttggaattttaggtcaaatatgaaaaatacacatttactataaaatatatttactgtaaaagaaagttgacacaggaaaactcactataatactct<br>aaca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	587	271	NA	intron:PIGK:NM:005482:4/11
0	chr1	84685863	84685864	1001637	0	+	1104685460278	NA	NA	SINE	Alu	AluYb8	catagtattcgaagttctggccagagcaatcacgtaagagaaagaaataaagggtattcaaataggaagagataaagtcaaattgtctctgtttgcagat<br>gacattactgtatatttagaaaaccccatcatctcagcccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtgc<br>aaaaatcacaagcattcctatacacaaataatagacaaacagagagccaaatcatgagtgaactcccattcacaattgctacaaagataacaaaatacct<br>aggaatacaacttacaagggatgcaaggacctttttaaggagaactacaaactactgctcaaagaaataagagagaacacagacaaatg<font color="green"><u>GAATGTTTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAGAAAGAAAAG</font><font color="green"><u>GAATGTTTTTC</u></font>atgctcatggataggaagaagcaataatgtgaaaatggccatactgcccaaagtaatttatagattcagtg<br>ctatcctcatcaagctaccattaactttctttacagaattagaaaaaaaaactactttaaatttcatatggagccaaaagagagcccgtatagccaagac<br>aatcctaagcgaaaagaacaaagctggaggcatcacactacctgacttcaaactctactaattgtctacagtaaccagaacagcatggtactggtaccaa<br>aacagatatatagaccaatggaacagaagagaggcctcagatataataccacacatctacaaccatctgatctttgacaaacctgacaaaaacaagcaac<br>ggggaaaggattccctat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	79354671	79354672	1001638	0	-	1104685761440	NA	NA	SINE	Alu	AluYb9	tgacctttaatgactgaagtgtctcaagcgtcatttctcagatctcatcactttttcatttacattcattagctaagtgatcttatcaagtcctgtagcc<br>ttcaaaacatagtagcaactcataatattatctctggccaggaattaaccctttaacttcaatattaaaatccaattgcacacaatatgtctttatttgg<br>ggaccaaataggcatttcagacttaacatgtccaaaaccattatcttgattcccactatctacctgcttccaaatctttccttctagtcttccccatcta<br>ggtaaaggaccatcacattctaccagtagtcaaggcaaatattttaagatcatctctaactcatctctggaatagaattcctactctataatt<font color="green"><u>GATTTTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AA</font><font color="green"><u>GATTTTT</u></font>ttctttaaaaaatataagtatacagaattttcttaattctacttatttttcattacatactcatttatccacaccaaaacttatttattta<br>atcttcaattcatttttaaaaataacatcacaagcactcatgaacctatcattcaatacaaaaagggtactcaatggataatctatgcatcccccagcct<br>tccacaacatccgcctgccactcctaacccaagtaataaccatcaagatgcttcattcactatttccttgctgtaggtttatatatttttaactcatctt<br>tatgtattcctctacattttattagcttcttaaaaacactttcatggtgtatgtacatttatactcaatattatattgctgaaattcatctatgttgttg<br>ca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	92940121	92940122	1001639	0	-	1104685458125	TGGATTGTTGCTTATGCAGGTA	TTCCTCCTTGGTTAGAAAAAGA	SINE	Alu	AluYa5	tgtataggataacatctataacaagcaagcaagagcttttctcaaaaataaatgttttttaatctgcctgtcttgccaattttaggttttttggagaagg<br>aaggtataacttaccatgtattttgaacaacttttttttactttttaggcttactctttagtagatcgtgaggttggttactgtcaaggaagtgctttta<br>tagttggattgttgcttatgcaggtaagttaatataagtattaaatgtccaatgaaattttttattaagttggattggagagtttaaaaagcatctttgt<br>tttattaaatataagtggatatgggtattttttcctaggcataatttgaatacaaatatttagtttgcattttaaaagattaaacatgt<font color="green"><u>TATGTTATTTT<br></u></font><font color="red">ACAGTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTA<br>AAACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGACGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>TATGTTATTTT</u></font>cagtaatatcttaccaccaaatgaaatttcaacttcatgatagatacatttttactgtaatattctactaaagc<br>ttgtatctacagtagtttaaaatcttatttgttaacatttaatgaagagtaatctttttctaaccaaggaggaaataattaaagtgttggtaagaaaatc<br>ttatttatattgtacaacatctttagagatttatagagaatttaatttatcatggagctaaaagcttgttatgcatacctcactgcatgccctaaaatag<br>tggtactcagccacttttaccccctagggatataactttgttattgagtgtgcagtgggtttgggtggaatgttttcagaattcgggggtaggataatca<br>tagctttgaagggaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	670	343	NA	intron:EVI5:NM:005665:5/18
0	chr1	179314049	179314050	1001640	0	+	1104685260820	GTTATGAAGGGTTTTTGCTTGG	CACTCTTGCATCTGTGAGAAGG	SINE	Alu	AluY	ttggagcacaagctgtttcctgtctttaaagcctattatctatttcccttccaggtggaggttgggctgcctgctaatttaatcccctgggcttccccct<br>ctgccttcaagatctcacagacgttcaggcttcataaagagggcacttttgtgtcttcctcccctgaaggcctccatctaccatggcagcaaaggagctg<br>ctattttgggaaacagcagcagagttgggagggttgttaattgtttgtcaaacccttccatgggggggcaagaaaaagagcagagcagtgcccttgcctt<br>cactctatttcactcttgcatctgtgagaagggaggggaaaagaggactccttgtccttttcaggcacaggcacccaaactaatt<font color="green"><u>TTTTGTTTTTTTTTT<br></u></font><font color="red">AACAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAA<br>CACGGTGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGG<br>AGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAA</font><font color="green"><u>TTTTGTTTTTTTTTT</u></font>tcattcttctacccaatggaaagacataaacaaacataatattgtccaagaagccaatcaaaatagtttaaaaatcatttat<br>aacctcaaaaacaaaacaaaaacagccaagcaaaaacccttcataacagaaatgaaacaccaggggttttgccgtccattctgatcaaaccaccgcagcc<br>aaactgactaagcagatccccaagccccgccaacaccccactgacacacatgaaaacaattctagccaggcacactaacgggataattcaccatgacaca<br>cactcaccccatcacagcacagacaagttcaaaatcaaacagaaaaagtcccagactaagaaaaagctactcgggactgtgacctcagaggcccccatgt<br>gat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	537	220	NA	intergenic
0	chr1	158314310	158314311	1001641	0	-	1104685104224	CCAGGACACAAAAGCATAGACA	CTGGAGGAAGGGAACCTTTTAT	SINE	Alu	AluY	acacaaaagcatagacaagattctagcttttggcttggcacggtggctcgaacctataatcccagcactttgggaggctgaggtgcacggatcgcttgaa<br>cccaggagatggagaccagcctgggcaacatggcgaaaccctgtctctacaaaaaatacaaaattagatgggtgtagtggtatgtgcatgtggtcccagc<br>caccttggaggttgaggtgggaggatcacctgagcctgggagctcaaggctgcagtgagccgtgattgcgccactgcactccagcctggacaacagagtg<br>agaccttgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggacccgtggtgcaaaataggaaaagagct<font color="green"><u>GGCCACAGTAGGCTCTTTTT<br></u></font><font color="red">CGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGA<br>AACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATGGCGTGAA<br>CCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>GGCCACAGTAGGCTCTTTTT</u></font>tgtcacttggagaacagggaacaggtgatacttttgggagaaaataaaaggttcccttcctccagcagacacagctctga<br>gctgggtgcaggaattggcaagctgaatgcagttcagtcctcaacttgccccatcagcaggtgcctttgtggcagccctgagatcagccaaactggggag<br>gcttccctggacaagatcatgagacatcttgtgcaaaatctggcaagtggaagaggaagcatgatggggaagacagcagacagttgaggatatgagttta<br>gtggagcagggaggccaatctggttgattgcaaaaatttgtataaattcaagggggatggggctctagaaaactcagagcagaggaaagatatggttgaa<br>	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	760	463	NA	intergenic
0	chr1	163925927	163925928	1001642	0	+	1104685471570	GGTCTGTGGTGACTTTTTGTCA	GATCCAAAAAGCCTCATGTCTC	SINE	Alu	AluYa5	gctcatgcctgtaatcccagcactttggaaggccaaggcaggcggatcacctaaggtcaggagttcgagacgagcctggccaacatggggagactctgtc<br>tctactaaaaatacaaaaaatagccaggcgtggtgtcatgtgcctgtaatcccagctattcaggagtctgaggcaggagaatcgcttgaacccaggaggc<br>ggaggttgcagtgagccaagattgtgccattgcactccagcctgggtgacagagtgagactccatcacaaaaaaaaaataataataaacagaaactagtg<br>ctaaggtattgctatggctgctgcattttgctgtaataaaccatccttctctgtgatccaaaaagcctcatgtctcttgctagaatatatatatgtat<font color="green"><u>TT<br></u></font><font color="red">TCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAAACGGTGAAACCCCGTCTCTACTAAAAATACA<br>AAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGTGTGAACCCGGGAGGCGGAGCTTGCAGTGA<br>GCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TT</u></font>atatacatatattacacataatt<br>gtgtaatttacaactataatatagaatatatgtatattatatagattatatattattctatgtgtataacatagcttatatgtgtataattatgtatatg<br>tatattatatgtgttttatatgtatatgtatgtaatatatacacatatacacacacactcttgaaagcagggaaactctcagacccgtcacagtttctga<br>cgtaacatacttatgacaaaaagtcaccacagacctaccactcagctatccatgattcttattttgatgtattctcttctgaattttctttctataatga<br>acatctggtacttctgatctttaagactataaaaagtttaactatcagagtccagaatcaagatggccgaatagg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	581	305	NA	intron:ALDH9A1:NM:000696:2/11
0	chr1	216068467	216068468	1001643	0	-	1104685476127	NA	NA	SINE	Alu	AluYa5	tttgaatttgcattttactgatgattagtaatactgagcatcttttaatgtacctgttgacatttttatatcttctttagagaaatgtctgttcatattc<br>tttgcccactttttaattggcttatttttcttgctgttgagttgtaaatgttctttataaaatctgaatattgacccttatcagatgagtggtttgcaat<br>ttttttccccagtttgtaggttgccttttcatgttgttgattgtttcctttgctgtgcagaagctttttagtttagatttagtttagtttgaagcttttt<br>agtcccattttatttatttttgttttggtagccttttttttttttggtgtgatattcaaaaaatcatttccaatgtcaatat<font color="green"><u>TATAGGTAGAACTTCTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>TATAGGTAGAACTTCTTT</u></font>tcctcttctaggatttgtataaattcagatgttacatttaggtctttgatccattttaagttggtttttatgta<br>tggtataaaatagcatccaatttcattcttttgcatttggaaatccagtttccttgcatcatttgtcaaagagactatcagttccccacagtgtcctctt<br>ggtgcccttgtcaaaaattagttgaccacatatgtttcaatttatttctgggttctctattctgttctgttggtctatgtttctgtttttatgctagtac<br>catactgttttgattattgtagttttgtaatataactttaaatcagaaagtatgatgtctctaacattgtttttattcatactgccttgaatattcaggt<br>ttcttttg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SPATA17:NM:138796:9/11	
0	chr1	220937321	220937322	1001644	0	+	1104685475059	GACACATGTGAACTTGTGCTTCT	GAACCACACCCAACCTCAGTAT	SINE	Alu	AluYb8	tttaatatacggagtctcactctgttgcccaggctggtgtgcagtggcacggtctcagcttactgcaacctccgcctcccaggctcaagcgattctcctg<br>cctcagcctctcgagtagctgggattacaggcatccaccaccgcgcccggctaatttctgtatttttattagagacagggtttcaccatgttggccaggc<br>tggtctcgaactcctgacctcaggtgatccacctgcctcggcctcccaaagtactgggattacaggcatgagccactgtgcctggctgcaacagttttta<br>atacagaaatcgactgaactatggcaaaatacctccataggcattattcataactattttaaggaaccacacccaacctcagtatt<font color="green"><u>TCCACTCCTTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCTTTTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCCACTCCTTTTTT</u></font>cactcatttcagctatagcattaacttctaaaacatttagaatgtattgatatcaaaatcaagc<br>gcttgctactgtaattgtttcacttttcttagaaacagatgactcagaaaaatgattaagaagcacaagttcacatgtgtcagagtatatgtactgacaa<br>ttaagacttgaattattagcactcaaattaactgctcatatccaatatggtataaattggaaaatgctttcattttcaaaatattggctattaattgtca<br>ttgctaggaaaattgacagctcaaaagatcagttaaaggaaaagatggaatagaaatggacgattaaagagctaagttaattttgctaaaacgtattcaa<br>tctatataagaaaaaataggtt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	518	183	NA	intron:AIDA:NM:022831:2/10
0	chr1	187099474	187099475	1001645	0	-	1104685258998	NA	NA	SINE	Alu	AluYb8	aattagactgttacaaggtattttatgtaggctcatagtaatcaaaaagcataaacttaaagtatatacacaaaagataaagataaatgaattaaagcat<br>acagaaaatcatcaaatcacaaagaaagaccacaagggaggaagaaaggagcaaatgatttacaaaacacttagaaaacatttagtaaattgacaatagt<br>aagttcttacctatcaataattactttaaatataaatgaaataaattagttagaaaacagaaagtgcctcaatgaataataaaataagatatgtctctat<br>actccctacaggagactcatttagatttaaagacagacataggctgaaattgaagggatatcaaaaagatatcccatgccaatggtaat<font color="green"><u>TCTTCTTTCTT<br></u></font><font color="red">ACACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTA<br>CTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGA<br>GCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCTTCT<br>TTCTT</u></font>gtggtctatatttacagaagatgaaatagactgtagtcaaaaactatcagaagagatgaggaagattataaaataaaaaggaggttaattgatca<br>acagtataaacaactataaatatatatgcatccaatattatagcactcaaaaaaataaagcaaattgggccaggcacagaggctcacacctgtaatccca<br>gcattttggggtgccaaggcagatgggtcatttgaggtcaggagttcaagaccagcctggtcaacatggtaaaaacccatctccactaaaattacaaaaa<br>aatgagccagcgtggtggcatgtacctgtaatcccacctacttgggaggctgaggcatgagaatcacttgaacccaggaggcggaggttgcagt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	187513663	187513664	1001646	0	+	1104685258851	CATAAGGAAATAGTGGCAATGGA	TTTTTCTAATTCGTAGGATGCAAA	SINE	Alu	AluYa8	tgtaaattttatttgtagatgtgattaatgtagagggatttgcataataatcacttttctaaaaatgcatatgcataggtgaaaccactggttgttccta<br>tttaaatacacatacatgatgatatacatttggaatgcaaatataaatattagtaaacttaatagtgatattttatatattatatatacacttcattatt<br>attcatagaaatcaaatacttttgatattttaattcctattggagtaggtttctataatattcatataattaggtttaaaaattgtgtttttctaattcg<br>taggatgcaaataaacattagtccttctgttactggactaatgtgttactgaatgaaattaattttttaaaagatttagagaggttat<font color="green"><u>TGAATATTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>TGAATATTTTTT</u></font>aggtagattttgtaaaaacatgtttatttgacttaggttttatgtaatcagaaataagaggatggataataacaaaaaaaaat<br>gagcttttaaatatccattgccactatttccttatggaatgaatatggatacatagtttcattacataaatatagactatctgtgtagactattatattt<br>aaaaatattctatggaacacagaaagtatgagtatttttctgcatacatttttgaaggcacaagtaaaccaattgggggcagatttaaattaaaagaaaa<br>cacaaaaaattagaccccttgaaataatgcattttgttttccaaggctctagcaattttaattactaatatttgatattgactcaattttacactaatca<br>ctatg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	549	233	NA	intergenic
0	chr1	194420171	194420172	1001647	0	-	1104685256946	NA	NA	SINE	Alu	AluYb8	ttcttggagactggcttccaacaaatgtggtatttctcattttctccgaagggaagtcgagattacatccctaaagatgatccacactcaactttgcact<br>ggaatatctggtaagaaagattcaaaaaagaagtgaaactaagacgttttaaatatattgggtagatactaaaaaaagaagtaggaactttgaggaaata<br>tattataaaactattttttccataagaaagagtatttcaaatagtctctactaaaaataacgtatggccatgtgcagtggctcactcctgtaatcccagc<br>actttgggagaccgaggcgggtggatcacttgaggtcaggagctcgagaccagcctggccaacatggtgaaaccccatctctac<font color="green"><u>ATATTTTTGTATTTTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACCGAGGCGGGTGGATCACTTGAGGTCAGGAGATCGAGACCATCCTGGCTAACA<br>AGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTACCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>ATATTTTTGTATTTTT</u></font>tagccaggtgttgtggcaggcgcctatactcccagctactccagaggctgagtgaagcaggggaat<br>cacttgaaccctggaggcggagtttgcagcgagccgaggtcgcgccactgcactccggcctaggtgacaagagcaaaacaccgtctcaaaaaaaaaaaaa<br>aaaggcatgtatgagtgagtttctcccaaatatataaacatcataaaaccataactgacattttgatggaaaatttcttccactcgagtcatattcactt<br>gtagtaaatcttgatagtgagcttgcactagctttcattccagtgaagctgaaaccaggatttttgtctacactgtgtcttctccccatggtagagagga<br>tagtgtggattcttaggt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	195278495	195278496	1001648	0	+	1104685256795	NA	NA	SINE	Alu	AluYa5	atttaaaagttgattcatggacctttaactttcagctatgacagaggagattatatcaaaccagcacttctattaagaaccagaaaatctgaaaaacagg<br>aagcaattcgaggtatcagaaaacctccaaggaacttagtcaaggaagtaaggttctggaaaaagtgtattcaggtgagttcaacatctatgtgaggctg<br>ggcgtggtgactcacacctgtaatcccagcactttgggaggccaaggcgggcggatcatctgaggtcaggagtttgagaccagcctggccaacatggtga<br>aaccccatctctacaaaaaaaaaaaaaaaatagccgggcatggtggcatgcacctgtaatcccagctactcgggaaagctgaggcag<font color="green"><u>TCAAGAGATTCTT<br></u></font><font color="red">CCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAA<br>AAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGC<br>CGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCAAGAGATTCTT</u></font>cctagaaggtgga<br>ggttgcagtgagcagggatcgcaccactgcactccagcctgggcaacaaaaggagactgtctaaaaaaaaaaaaaaattctatgtgccatttttttctct<br>tgaggtgtttgttgactctaagtctgacctgagaggttagatgatagagaatggtaagcttaggcatacagccagcagaacttctgaaaatctcatggag<br>ttgaagatagaaaaatgagaatttcagtaaaccaaagcagccaggacttgaagaataaagaatttagaaggataggaagtgtagagatatgagtttgagg<br>ctctgcaccagcttttccctaaggtactgcttatccttgacttgtatagaggcataggatgagaagccaagcag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:F13B:NM:001994:10/12	
0	chr1	230654396	230654397	1001649	0	+	1104685320249	ACACTGGAAGGCAAAACATTCT	GGAGAAAGCCCATGAGTATGAA	SINE	Alu	AluY	tacacatgcttggcttcctctcgatataccaaatcaagtcaatggatggaaactgcatttctagcttctggcacattctttacagtttgcttgccaacag<br>gagatactaaaaaacctcaagataaggctgtgggatcacttttatgtaggcatattgatttcctctttgctccataacaaatgtacacatcatcaactta<br>tgctcctaattaccatgctacatagggatcaatacaaagtcagctccaggttaaaaataagtgcaatttttcacatttcttgtctagccaataattttct<br>gagtctattctctcttctctctcaaaagcatacactggaaggcaaaacattctgtagaccaagaaggtcactgaaaatgtgttagt<font color="green"><u>AAAAATGTGGCATT<br></u></font><font color="red">TGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCAGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AATGTGGCATT</u></font>atcaaactgtaagaataacaagtaattccattagatggcatcctcagaggatcttttattttactgctgtattctaaaaacagtattac<br>ttgtccttttgcactcaccatcgtggacttcctgggatggcttaatcctgtaaaagggacactcattaacttattcatattcatactcatgggctttctc<br>ccctgcttcctgatgcctaaagctaagtttcctaccagaagacttcttggttacagctgccaccacttcctggcttcctgaacatgatcagcaaagaggg<br>ggtgtcctatcttgctcacagttaacagacaccacggtcactgccaagtactgtagtgtatgcactccacaacttcagaggcacccaggaaggcccc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	570	260	NA	intron:SIPA1L2:NM:020808:8/21
0	chr1	244055946	244055947	1001650	0	-	1104685469765	NA	NA	SINE	Alu	AluYa5	tctctatttaaaaaccaaaacaaaacaaaaacaaggaaatcctgtcacatgctacaacatggatgaagcttgcagacactacgctaagtgaagtcagcca<br>caaaaagataaacactatttcattccagttatatgaagtatctaaagcaggcaaattcaacgtaaaaaggtggttgccagagactggagggaggagaaat<br>ggggaattgttcaatgggtatagagtttcagttttgcaagatgaaaaagttctggatgactgttatacaacaatgtgaatatacttaatagtactgaact<br>gtacaccttaaaacctagtggcacaaatacatgatgcatatttttccatttttatttaacaaatacttaattaaatacaacat<font color="green"><u>CCTAGCATCTGCTTTCT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAGAA</font><font color="green"><u>CCTAGCATCTGCTTTCT</u></font>gtactagatgtaggagcagagatagatgattaaggcagaggaggtctttgccttcataggaaggtcgtttagga<br>gaaaatgacgtggagttttcctagagtgacttcaattctagacccagatacgtcattactcaggcagtgaccttgggcaagttacttaattcttctaaac<br>tttagatttctgtagatgtaaaataggaataattagtatctgtctcacagattgtcataggaattaaataaaaatgtatttagaataatgacacatgttc<br>agcatgctcagtgaagttctgttttttgctgtgctcatcaattcctctctcacaggggcttccagactcatggaacaggtaggagaaagccctacccaca<br>acaaagccc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SMYD3:NM:022743:10/12	
0	chr1	244658966	244658967	1001651	0	-	1104685469552	GCATAGATAACTCTGGGCAACC	CTTCTCAGGCTGTGACTCCTTT	SINE	Alu	AluY	gcgtcctacatttgaaggcctcttaagatgatacttggcagtgctatactgtttttaatggtatctttaataatggcatgtcttacaatccatagcatct<br>tacatttgatgaattttagtaagttataccataaggttatatcttgattccctttcttagagttgtatcacccaagagtatcactggttgcagtggacag<br>tgtggcttctactcaacattctttccaatccagctcattacatggcagttttgcaggtttggtggggtagacttcccttattactgtacctgtggtgggt<br>tcccattggcatagataactctgggcaaccttattccctgtctacggtggttggttctgtggtgggaacaatacctgatctgtcctat<font color="green"><u>GAGTCTCACTTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>GAGTCTCACTTT</u></font>agagcttttgtttggtaggaaggaatgcttgtgctctccccttttatatgagtacagggtagttccaggacccattgg<br>catctataatattcctgagggggagccagactgagctgcaagctagctctggaagagggcagagcagagggaactggagagaaaggagtcacagcctgag<br>aagccatcacgaggcagcagagcatcggcggttaagagcatgggctgtggtgtagattgcatgggtttgaatcagcagttaagagcatgggctgtggtct<br>agatcgcgcgggtttgaatcagcagttaagagtatgggctgtggtctagattgcacgggtttgaatcagcagttaagagcatgggctctggtctagattg<br>cacgggtttg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	595	274	NA	intergenic
0	chr10	29142548	29142549	1001652	0	-	1104685338176	NA	NA	SINE	Alu	AluYa5	tgcccagtgcaacaatgttgagagatgagacctttaagaggtgattaggtcaggagggcactatctacataaatgaattaatgaagttattgcaggagtg<br>ggttagttatctcaagagtggattcctgataaaagaatacatttggatcaccttccctgtcttactctagccctctctcttgtcctatcaactcctgcca<br>tgggatgatgcagcaccaaggctctcaccaaatgctggcaccatgctcttggacttcccagcctccagaactatgagccaaacaaatttctgcttattat<br>aaattacccagtctgtggtgttgttataacaacataaaatggactaaaacaatccctttgtaatttttcatgaggttgcattgaat<font color="green"><u>CTAAATCATCTATT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAAGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>CTAAATCATCTATT</u></font>aaaaaaattgacactttcacaatttttattcttaccatccaaaaacatgatatgtgtgctcattccacttttcttttgtcttcc<br>aataaaattttatgtgtttctttacattaggtttatgtctagaatttttctccccacaggtttgaaatgaactttaattagcttttgtctccagaattcc<br>ccatcgatgcctgggctttagggttctcctcaccccctccaatttgaaggtccagactggaaagaagagacacaagaggggacagaagattacctagcac<br>aaagttgcaggggggttgtctccctggcaagagatcccagggcccaatgcctctccagcccagccacaagtactcagagtgtcagaacatatttttgtaa<br>tg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	29186326	29186327	1001653	0	-	1104685338139	GCTGGAAAACTGAGTTCCGTAG	ACCAAAGGACCCTCAGGTTAAT	SINE	Alu	AluYa5	gctacttgggaggctgaggcacgagaattgagaatcacttgaacctaacaggtggaggttgcagtcagccgagatcgtgccactgtactccagcctaggt<br>gacagagcaagactccatctcaaagagaaaaaaaagacacatggttgatgtctagtgggggtatgtgataattcttttccatatcctcttcccccttctt<br>gtccaagcttcaagtcagcagttttgatgagaagatttagtgggagtctgacagagttcttcttcaaagaagtgtgatgtgaggccaccaagtgagatca<br>aggagggaaggtgggtgagcatgcccactgagcacacaggagcaacctagtccagcctaggggaggctggaaaactgagttccg<font color="green"><u>TTCCTCCTCCTTCTCT<br></u></font><font color="red">AGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCG<br>TAGTGGCGGGCGCCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCA<br>CTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TTCCTCCTCCTTCTCT</u></font>tggggaaatactggaaga<br>tgctaagcagggaagtgacaggatctgactagaggcagagaagaagcggggtgggcatggacagtaggttgctgggggaaagagactggaacaaaagaga<br>ccaagtgggaggctgagagtttaatggacatgggaggtgaggcaggcctggaataaaggtgtggtgatggagagaagtgggcagatttcagaaatactta<br>gaagaaggggccaaaaagatgcacttgaatcaaaaacacatttatttataattttcttaaacaaacatgacttcattttgaactgctgggtagctatgtt<br>atcaaatatattaacctgagggtcctttggtaagtctgatggtactcccaggcactggtttgtaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	666	385	NA	intergenic
0	chr10	30058780	30058781	1001654	0	-	1104685337813	NA	NA	SINE	Alu	AluY	gcctcccaagtagctgggactacaggtgtgcaccaccacgcccagctaatttaaaaaaaattatagagaaatgttgcccaggctggtctcgagctccctg<br>ggctcaagtgatccttctgcctcagcctctctaaatgctgggattataggtgagagaaacagtgcccagccatcatgttacgtttctaagtcttgtctct<br>caagagcaattgccaccttttt<font color="green"><u>AAAAACACAAAAAGTAGCTGGGTGTGGTGGCACGCACCTGTAGTTCCAGCTACTTGGGAGGCTGAGGCGGGAGAACCG<br>CTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCACCGTTGCACTCCAGCCTGGGTGGCAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAA<br></u></font><font color="red">TTTT</font><font color="green"><u>AAAAACACAAAAAGTAGCTGGGTGTGGTGGCACGCACCTGTAGTTCCAGCTACTTGGGAGGCTGAGGCGGGAGAACCGCTTGAACCCAGGAGGCAG<br>AGGTTGCAGTGAGCCGAGATTGCACCGTTGCACTCCAGCCTGGGTGGCAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAA</u></font>agagatggggtttcactc<br>tgttggccaggctggtcttgaactcctgacctcatgatctgcccacctcggcctcccaaagtgctgggattacaggtgtgagccaccgcacccggccaat<br>tgccaacttttaaacacatacatccctctgtcttgccacacacaccacatacatacacacacacacacacacacacacacacacacacacacacacacct<br>ccat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SVIL:NM:003174:1/36	
0	chr10	39122816	39122817	1001655	0	-	1104685024089	NA	NA	SINE	Alu	AluYb8	caacaaaattgaatcgaaccaactggaaacgagtggaattgaatggaatggaatggaattaaatggactagaatggaatggactgggatggaatggaatg<br>gaaaaaaatggaatggaacggattggaatcatgcggaacgtaatggaatggaatgaaatggactcgaatggaatggagtcgaatggaatggaattgaata<br>caatggaatcgaacgtaattgaattcaatggaatcaaaaggaatagaatggaatggagtgtaatggacagatatcgaatggaatggaatggaaaggactc<br>gaatggaatggactggaatttaacagacatgactggaaagtactggagtggaatggactcgaatgcaaagaaaatgaatggaat<font color="green"><u>CCATTCCATTCTTTTC<br></u></font><font color="red">GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGTAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>CCATTCCATTCTTTTC</u></font>aaaggaatagtatggaatggaagtgtatggaatggaatggtctcgaatggaatggactcaaatggaatagaatagaa<br>tgcaatggtatcgcatggaatggaaaggaagcaagcgcagtggaaagatatcgaatgtaatggaatggacttcaatggaatggactggattggaattttc<br>tcgaatggaaaggactggagtggaatggactcgaatggaatgaaaacgaatggaatggaatggaaaggaaaggaaaagaatggaatggaatcagatggaa<br>aggaatggaatagaatggagtcaaatggaatagaatccaatggaatggcttcgaatggaaaggaatggaatggaatggaatggaatgaaatggaatgaag<br>tcgaatg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	14577795	14577796	1001656	0	+	1104685342284	NA	NA	SINE	Alu	AluYa5	gacttcattatgatcatccctttgagatgttgctggatttggtttggcaatatattgcctagaattcttgcattcatgatcctaagtgtggtcagccagt<br>aattttcctgtcttctactatccttggtaggttttggcatcaagattttggaagcctcaaattgaggtgaggagtgtttcctctcctgctgtactcaaga<br>atagtttgtgaaaaattggaattattttttctggactttctggtagaacctgcctttgaaactacctttgcctagacttttaagattgtttttgacttct<br>gttcgatctctttgaagcatatattatgtttttaaattttgggtttgtaatgttatatttactccctgactacaaattatctcatat<font color="green"><u>GAAAATTTTTTTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>G<br>AAAATTTTTTTT</u></font>ttagcagctaaaagaacaccacaggagagccttaagcttcaagcttttgaatgtagaatttttgttcaggagaatcacaggagcgatg<br>agctagctctgtccagaattgaaagcaggtgatgaccaaaaaaagaaagaagccagagaacaaggaagatagtttccaatgttattgattgtataaatct<br>cagttcatcatcccaaagaaaaaaagatttcatgctccacctacctaactcatctaccaaaaagagagaatcgcccatcactaggctcttctttttaact<br>tacttctgggcaacgcaaccccttttttcttctctgcatttatttgattttaaattgcatgagcaatttacattaatatttctctgtagcattcacagt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	20245264	20245265	1001657	0	-	1104685340647	AAAAAGTCCCCTTCCAGGTT	GGAAATTATGTGGAGGGAGTTG	SINE	Alu	AluY	gagttcactgcagctctaccactgtgtagctcagtgagatttgtctctggacttgagttgcttggtatgttaaatggtgataataataataataaataat<br>catttcctaaagtgtgacaattgttttatatagtacatagcttagcatagtgcctataaataattgttggctaccattaccattgtaatttttatttgag<br>tatttttgagactttgattgcttatgtatccatatgtattttgaaaaaagaaaaaaagtccccttccaggttggggcacgatggctcacacctgtaattc<br>cagcacttttggaggctaaggtgggcggatcacctgaggtcaggagttcaagaccagtttggccaacgtggcgaaaccccatctctac<font color="green"><u>TGTATTTTTTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGTGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>TGTATTTTTTTT</u></font>aaaatgagccaggcgtggtgaggtgcccctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaatctggaggc<br>agaagttgcagtgagccatgatcctgtcatgagccatgatcctgtcactgtactccagcctaggtgacagagtgagactccattaaaaaaaaaaaaaaaa<br>acaaaacacaactccctccacataatttccccgtaaatattttatctacgttgatgcggctcacattcttacccacagagcatttccaagtcagatgtac<br>tttgtactttctaggatgcaagagaggtacacatgaaagcaccacccggctgttaggcttgagctgagatagagggaagggaaaaataagctctctattc<br>ctaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	678	362	NA	intron:PLXDC2:NM:032812:1/14
0	chr10	70978754	70978755	1001658	0	+	1104685137674	NA	NA	SINE	Alu	AluY	aagagagcctggtggtcttgctgagttgaggatacaaagaagagaattcaggaggttgaggcagctagggtttgcacgtagtggaaagatttttacagag<br>aaagtttcagaaacatgcatagagctcccttgagttcccatgaagctaactaaaaaaaaaatccagggaaaggacaattacttgggagaagtaagataaa<br>aagattcttagagttcacacaggttggggaatcatttgaggttctactaaccaggatggagacgcattgctataatatgtgaggcatttatatatttgat<br>gaaagattctagaagggtcatatttcaatggtggggctaacctagctctagagtgaaggttactgtagtcccattttttaagagct<font color="green"><u>AAAAACAAGCTTTA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCCGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAACAAGCTTTA</u></font>aaaagattatagttgtcttttaatggcctccaggacaaaatgcaacccctctttaatggaatacaataaaatcaa<br>gcactcaatgatgtaaatttgcattacccagcatctaatcaagaatgactagaaatacacagaattagaaatatgttacccataattagatgtggatgct<br>aaagcaactccatcttggatgctaatctgccatgttgacttctgattaaccctgttctgggaaggcctgtaagatttctactttatctactgttatcata<br>catgttgcccagaggtcaaaacaaccttgataataaattcttctctcaggcagactaacacagcattcttgcctttccctgaggagttgaattcaactgt<br>cttatacactc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	73332013	73332014	1001659	0	-	1104685145815	NA	NA	SINE	Alu	AluYa5	ctgcctcagtctctctctctttaaacaggaaccacatggattgcaaaggcaaagttatgaaatatatacaatatgaccctatagtgtaaaactat<font color="green"><u>GTGGC<br>TCATGCCTGTAATCTCAGCACTTTGGGAGGCTGAGGCAGGCAGATAACCTGAGGTCGAGAGTTCAAGACCAGCCTGGCCAATATGGCAAAACGCCATCTC<br>TACTAAAAATACAAAAATTAGCTGGGCATGGTGGCGCACATCTGTAGTCCCAGCTACTCAGGAGGCCACGGCAGGAGCATCACTTGAACCCAGGAGGTAG<br>AGGCTGCAGTGAGCCGAGATCACATCACTGAGCTCCAGCCTGGGTGACAGAACGAGACTCTGTCTCAAAAAATAATAATAATAATTAAAAATAAAAATTG<br></u></font><font color="red">CCGCGCCCGGCC</font><font color="green"><u>GTGGCTCATGCCTGTAATCTCAGCACTTTGGGAGGCTGAGGCAGGCAGATAACCTGAGGTCGAGAGTTCAAGACCAGCCTGGCCAATA<br>TGGCAAAACGCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCGCACATCTGTAGTCCCAGCTACTCAGGAGGCCACGGCAGGAGCATCAC<br>TTGAACCCAGGAGGTAGAGGCTGCAGTGAGCCGAGATCACATCACTGAGCTCCAGCCTGGGTGACAGAACGAGACTCTGTCTCAAAAAATAATAATAATA<br>ATTAAAAATAAAAATTG</u></font>gcacctagcacttgaaccagggaggcagaggctgcagtgatccgagatggcaccattgcactccaacctgggcaacagagcaa<br>gaatccatctca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	66507075	66507076	1001660	0	-	1104685136157	NA	NA	SINE	Alu	AluYa5	acttatacaaaaacatatgtatcaacactgtttataacagccctacattggaaaaagttcaaataattttcaaaactagattggacaaaaaactatgata<br>tatcctcccggtagagtactgcacagcaataagaaagaactgctgacacattcagcaacatgaatggatttcacagttatcatgctatgtaaaagaaggc<br>agatacatagaagtatattccatatcattatattaattttaaaattccaaaggcagcacatttgataaaaaaattgtaaaagttatgagaatagttctac<br>ttggaggagcccaagagtttttggagtgttaggtatattctataacttgatatagatgatggattacatggctgtatatatgtgt<font color="green"><u>AAAAAAACTCATTGA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGATAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAAAACTCATTGA</u></font>atttaatgaaagtgattgtatattaactacatgtaaatcaaatgagttttttctcatgattattactcatagttttaattcccaca<br>aacaaaaacatttgttgaggaagtttccttaaatttcctagagttgtgttttctgtttcaacattaaaattttttgtctttcttaggtgataatgctgca<br>gataaatcttcttcagtgactctgcaatgcaatctgtcatgattatcatttaagtaaagaccaagaagtaaaaatccatcttcaagcaccaagtcaacaa<br>aattaaagatcttagtacatatgcttaagcaaaggtagattttggaaagaattcacagttgaaaatctctgagactgctatcaagcaacatacgcaaag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	56572384	56572385	1001661	0	-	1104685133375	TGGACAGCAACATAGATGGGTA	GGACCAACTGAGAAAAATGCTT	SINE	Alu	AluYa5	acccataagccaatcatctcccaccaggcctctcctctgtcatgtggggattacaattggaaatgagacttgggtagggacgcagagccaaatcgtatca<br>ctcactttgcatttattccttctcatttatttcttcactccatctctcaaatttcttatcctgctcccctagtcacaaaagactttgcatgacagctacc<br>caaaagaaggcaagatacttctcagagggttgaaaaataagagacttgagtctgctgaacctgagttttattcagtggaccaactgagaaaaatgcttgg<br>aaatattctcaggttaatattaaattatccatctttttagagatatatctacataggagtacaaatatatttatg<font color="green"><u>AAAATATATAAAAATAACTGTAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA</font><font color="green"><u>AAAATATAT<br>AAAAATAACTGTAGTA</u></font>atgcaaaaaactatagatacacacaatctatgtacctataaaattgtatcattacaattacattgctgtttaaaatatctgtga<br>atgagaatacctgaaaatatatttaacttatatgtgcatatatacccatctatgttgctgtccatctatttatccatttatagctatatctgaatctaca<br>tccatattaacaattttggtaggaaaacttatactctatatttgataaagttaacagtataattatatttttgtttacttttcagccaatctaaactatt<br>aatgttatcattttctagtgatggtcctgggtcattgccagactcaatagttttgttctttttttctataataagatgataaaaccattag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	588	273	NA	intergenic
0	chr10	61794863	61794864	1001662	0	+	1104685134792	GCCATTTTCCCTCATCTTGTAT	ATCTTCAAAGCATGGGGATCTA	SINE	Alu	AluYb8	tggacgtaatttgttagaaaaataagacaatatagccatagagctactagtaaactgtttcctaatgtaatgagaaaataaggtaacaatttttaatgtg<br>gacaatttacaaaactgtaagtaaatggggaagaactgtatgttttaaacaaataacaaaaaaaaaaggaaacataaattcagagacattttctatattt<br>ccaaagggtaaagacaacatccaccttttgtggatttttttttgagaacaaatacccccaaattaccacacacttaaatgtgaaatacttgtgtaataca<br>tttcaaggaatgaaaaacacagactttaaattccaagtcaaggctttggctattatttgccattttccctcatcttgtatggtgcc<font color="green"><u>AAAAAATAGATGCT<br></u></font><font color="red">TCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAA<br>AAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAG<br>CCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATAGATGCT</u></font>aaaatatttatt<br>gaaaaaaggaaagaatagaaaatgagatgagggaaatgaaaaacttcttatattagcaagatattctttataaagatcttttagccttttctgttacaga<br>gatatcattcaatgtaaaagatacataagttgctaaatgatattcaagaaatcaaaaactataaaaaatactttcttatgaagttatagatccccatgct<br>ttgaagattactcccaaattccactttaaattctattaatccaaatctgataacacctatcaccattttccttgagcagttttcatgtttgttgtaaaat<br>aaatctctaaaacaataaagggcaatcaatctgctcttaaaagggaaaattgaattatatgatattgcatgaca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	550	263	NA	intron:ANK3:NM:020987:1/44
0	chr10	58572220	58572221	1001663	0	+	1104685133884	GGAAAAGGAAGCATAATCACCA	CATTTCAGTATCCCTTTCTTCCA	SINE	Alu	AluYd8	gttacaaaggcttaaggactaattatatagagcaatgaaaagaatttcaacttctgaaactaatctggaaaatctataaacattttcttctctccgtcta<br>aactacgtctaatatattgagatgtaatattaaaaatgtgttattaataattgtttcatctgcagtatgaagattattcagccagggctgcaaacagcag<br>acacatgctgaaaagtgcctttggagaatagaatttgtcattgaatatggatgtcaggaaagaatctgggcaaaagcaattggattggaaaaggaagcat<br>aatcaccaaaataagtaaagtatattttactggaaagcccaatctacttgagattccgctataaatatctcatttataactcata<font color="green"><u>GAAAAAGAAATTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGAATGAACCCAGAAGG<br>CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCCTCTCAAAAAACAAAACAAAACAAAACAAAACAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAAAGAAATTATG</u></font>tagtggaagaaagggatactgaaatgtttatggcaaaattttcagtatatctttatcaagacatt<br>cattttgactgacagctaattttatgtataaaattatttataatatcagcttaaagtaactggaagtgtagcactctttctaaaactgtttatctggata<br>ttataggtttttttcaacaatataattttaatctggtacaaagactcctcaaaaaattatccctctgatatttatgtaagtcaattagtcctttgataat<br>gttatttatatttacacacacacacacacacacaggcacacacacacatacacatgcatacgtatttatttagcaagagtttatgctcagcacttaatga<br>aggtttgaatattgagacag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	475	141	NA	intergenic
0	chr10	64130015	64130016	1001664	0	-	1104685135401	NA	NA	SINE	Alu	AluYb8	tttatgatacatatggggacatatattttttataatagaaacaagtgttaattaatctatacccttctctagaccaagacaagaacctttacttctcttt<br>gcttttcctacactttcaatgttcatataatccagaatgctacttctaaattactatgaccttttaaataaataaattgctagttctttaaaataaatac<br>ttatttaaaattaatttactgtattatttgtttataagtgtttcttacatcccactcctttcttttgtgttcattgtcctttggatgaaatatattttgt<br>agtatttctttagaaaatcatctgtgggtgctaaactttctgaggcttgaatatatgaggatattttcatttattttctttctt<font color="green"><u>AAAAAGCCATTTGGTG<br></u></font><font color="red">AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAAGCCATTTGGTG</u></font>ggaaatataggcacactgctccattgtatctagcactgctactgagaaatcagatgttagtctgaatttgttc<br>ttctatcagtaatatgtcttttcataggtaacttttagtattttctctgtgttcttgaggttctgaaacttcactctgtctgtaggttgagtttaaaaga<br>atatccttttggatacttggacacttaggggttgtggtggtggcactcactcaatctgagagttcttgtctttctttggttctggaaggttcttggcaat<br>aatttcctcaaatattgctttgctttcattctctctattgtcttcttagaacagtaaactaccaattaacaccctttaattctatgtgttcttgttacca<br>tttattttact	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	54475976	54475977	1001665	0	-	1104685132629	GAAAGCAAGAAGGGAAATACGG	ACATTTCCTCTCTTCCCTCACA	SINE	Alu	AluY	acattggtaaggctgataacatgaattttttataaacaaatacataatacgtgtttttactaaagattgattgcaaagtttaaaagcaataaaaatactt<br>tacattaacatatctgtacaaatatcaaggggtttattaatattgcataatattttctaagggtctaaggtcaggaaacctgtgctattatatttgaagg<br>gaagtgttcctaagtgcaaagtcaagcggattttattttctccagttgttcagtggatcatgccatgttttattttacttcttaatgacttgggtaatga<br>cttaactgtacatttcctctcttccctcacaagtcgccaatggccttttattttcttcttgctgacaagaacaaatgattgtatt<font color="green"><u>AAATTCTTGAAAGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AATTCTTGAAAGTG</u></font>cacatcccttaatatatctattgcccccaaatccccttttttgatgtttagattaacgatgaaataactattctcttgctagttat<br>atattgtactctcactataatctgagaatttccacttatttctctgctgaatcaagataactatttcctagaatccgtatttcccttcttgctttctacc<br>ttgtattgctggaattcatcctcagttcctgccttagaaaatacgtgagttacattttctgaaaccttaaagttgctttgttaagtctttatatttgatt<br>aatatgtttatgaatatataattttaggtttaaaattattttcccatattactttgaagggattactaccactaaattctggtatcctacactgtgaac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	587	274	NA	intergenic
0	chr10	69664912	69664913	1001666	0	+	1104685137059	CACTTCCCAGTCAGACAAGTCA	TTGTTCCAGTCACTCATTCCAG	SINE	Alu	AluYb8 	accacaccggctaattttgcatttttagtagacacggggtttcaccatgttggccaggctggtctcgaactcttgtcctcaggtgatccacccgcctcag<br>cctcccaaagtgctggaattacaggcgtgagccaccgcgctcagccttcatttattttacagaggagaaggagactgagatctagagactgaacattgta<br>ctaaaaggcactgagcaatttaatgattagattaaggcaagaagtcaaatctcctgcatcccttcattttagaggctttaaaattagaagatcagttaat<br>acaagcccctcattttgcaatgggccaactgatatctaccagtcacttcccagtcagacaagtcactaataaaattttcaggaa<font color="green"><u>AGAATTAGCAATTTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AGAATTAGCAATTTTG</u></font>tgcataaaggacagcatcagttattttataaccctagtgtctagcacactagacactagaaaataataagt<br>agtcagtaaataacctggaatgagtgactggaacaataaactaggtaaatgatagatgcgggccagaatgaacacattcctagtgaataacccagacaat<br>gattcatgttccctcacctgtagggaacgggagctagctgcacattttgaatgcagaatgacttcttaaaaaacaggctgggtgcagtggctcacaccat<br>catttcagcacaggaatttcagaccagcctatgcagcatagtaagaccctgtctctacagaaataaaattaattagctgggagtaatggagaatgcctgt<br>agtaccagttact	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	493	165	NA	intergenic
0	chr10	100296902	100296903	1001667	0	+	1104685167744	NA	NA	SINE	Alu	AluYa5/8	atgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactcaagagcttctgcacagcaaaagaaactaccatca<br>gagtgaacagccaacctacagaatgggagaaaattttcgcaacctactcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaattta<br>caagaaaaaaacaaacaaccctatcaaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaaaagacacatgaaaaaa<br>tgctcatcatcactggccatcagagaaatgcaaatcaaaaccccaatgagataccatctcacaccagttagaatggcaatcatt<font color="green"><u>TGTTTCCTGACTTTTT<br></u></font><font color="red">TACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAATGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCG<br>AGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TGTTTCCTGACTTTTT</u></font>caggtgctggagaggatgtggagaaataggaacactttt<br>acactgttggtgggactgtcaactagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatc<br>ccattactgggtatatacccaaaggactataaatcatgctgctataaagacacatgcacacgtatgtttatggcgccattattcacaatagcaaagactt<br>ggaaccaacccaaatgtccaacaatgatagattggactaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcat<br>gtcctttgtagggacatggatgaaattggaaatcatcattctcag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:HPSE2:NM:021828:9/12	
0	chr10	115240277	115240278	1001668	0	+	1104685662367	AGGTAGCAGGCATCTCATGATT	AGGACATGACTGTGGGCTTTAT	SINE	Alu	AluYb8	acttcatggaaaatatttcaggatgaactttgccaattataactaagccaataaatacaattacattaaatgtagtcatattcctgctcctttgagccta<br>gctaattttacattataaaagcatttgatgagaacactttgtatttaggtaacatctttcatccccaagtctccaggatctacttgagagatgattggca<br>agtaaattccccaatgcagaggtccctcctctggtggaatggtgagtctctaacagaagaaggaaatttgctgacactggagtcactggctaactattga<br>agatggtatcaaagctaatcagcagacagaagagccagtctggaggacatgactgtgggctttatatttctgtgaattaattt<font color="green"><u>TTCCTTTTATTTTTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>TTCCTTTTATTTTTCTT</u></font>agttatttcttgttctctttgtggtgctctaagaatttcacatttaatcatgagatgcctgctacc<br>tccaggccccactcatgcctaagaagtgccccaaattactttgcattagatgctggttccaagttcagcagggaaccagaaatgttagatgcacataaaa<br>gttgggcatagggaggaggtgagaagggccagctttgagttcccttctacttggcaggtgtcttctttttctcttattttcaaacaaagtttattatttc<br>ctcctctatgagaagaatatattcttattatagaaaatttggcaaaaatagaaatgcaagaagcaaagaaactcccatgatccaaagagaatcactatta<br>acaatttgatgtatttc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	458	125	NA	intergenic
0	chr10	124725995	124725996	1001669	0	+	1104685659352	NA	NA	SINE	Alu	AluY	gatacaaggtcaagacataaaaatcaaccactttcttaattccagcaatgaacaagtgaaatttcaaattagaaacacaataccattacatgaacacccc<br>ccaaaatgaaatacttaaatttaaaacttctttttattgggtataaaatttttaaaatatgcatgaaatctatatgatgaaaactacaaaactctgttga<br>aagaaataaactaaaatatttcatgttcatgaatagaaataatattgtcaagatgtcatttcttcccaacttgatctatagattcaacacagtctcaacc<br>ccagcaagctgttttgtggatatcaacaaagtgattctaaagtttatgtggcaaggcaaaggatctaggctagccagcacaatatt<font color="green"><u>TTTGCTCCTTCTTT<br></u></font><font color="red">GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTACACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>TTTGCTCCTTCTTT</u></font>ctagaagactgacagtagccaactgcaagacttactataaagctataataataaagatagtgtcatattggcaaaagaat<br>agacaaatagatcaatgaacagaatagagagcccacataaatacagtcaactgatctttgacaaaggagcaaaggcaatgctatggacaaaaaaatagtc<br>ttttcaacaactggtgctgaaactagatatctacacacagactttacctccttcacaagaattaactcaaaatggatcatagaacaaaatgtaaatccca<br>aaactataagactacaggataacagagaatctagaagactgggcttggtgatgatatttttgataaaacaccaaaggtatgatgcatgaaagaagtcatt<br>ggtaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	105807205	105807206	1001670	0	+	1104685664564	AGTCAGATGCAGACCAATGCTA	CTTTTCCCTCCAGATTCTCTGA	SINE	Alu	AluYb8	gcaggagccgcaggggcaccaggctggcgctggtccccaagggccgccgccagcgccaccaacaccgccacctcctccactgccaccaccaccactgctg<br>ctgtagctgtggatatctgtgaaagagacagggaaaatgaagcaaatgcaggcagctcctgccttttccctccagattctctgacttttggtgactttct<br>ggcctgagtgactacgactgggggcttttaagttcctgtgctgttccacccaggacagggctggctcctggactgagcacagggcctgactggtgctgac<br>cagaagtctggcaatcctggctccagctgtgtgaacctgagaaggtcacttcacctttgtttccgtttttataacatggggtt<font color="green"><u>GAAGGAGGCAATCTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAACCGAGA<br>TTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAGGAGGCAATCTTTT</u></font>tggg<br>aaggttgttgaatgaaataggacaaggaatgtaaaatagtagaggagttagcagcacagcacgaggcttaaacatctttattttgaatatagcattggtc<br>tgcatctgactgggcccaaacctagagcgttcccatctccatgcctcagttcacacagtgctttctttaatccttacagtgcctagaattatactcagct<br>cttcaggggtgcctagtgaattaaaacaatgttttttgtaatgaaaagtgtttttagttccctaaaatggggtggtaggacttgacctgcttctatcaca<br>cggcggtggaaggaaatgaggaaaggctaaggggctggaggcgtgcatggcttagtctcttcttgagctgctgtgtaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	549	354	NA	intron:COL17A1:NM:000494:16/56
0	chr10	108981275	108981276	1001671	0	-	1104685663805	GTGGTGGCCTATTCAAAAAGAG	CTGGAGAATCCAGTGTAGGACA	SINE	Alu	AluYa5	cattagaccatgagctctcaggatagagagtgacatattcatcattatcctacacatattttagagggtgaataaatgtatgttgaaatgcgttgaaaga<br>agagatgctgtctatacaccctgtgtgactgccgattgtccttctctctagctcattctgtccctcctctccttctccctctctgtctctacctctatat<br>gtatgtataccacacacatgcacacacacaattttaacctgttgtttcttctgagaaaaataaattaatcctgactgttccatctgcaccagctctctag<br>tggtggcctattcaaaaagaggattaaaaggacacctccaaaggagggactttcatcagttatttttaactaaactgaggttct<font color="green"><u>GCATATTACACATTTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGAAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>GCATATTACACATTTT</u></font>acttatcacagtgttaatcaaaggggtgtgaaaaaatgaaaatagagattgcgtgtatgtgtcctacactggattct<br>ccagaaacagaccctgagaggaggatttgtgtgcatgtgatttattaagagcatgctcccaggagaaatcaggaagaaagcaagggataacagcatgtca<br>gggaagaggagaaagccaggaaaagatgtgatgattggcaaaacaaacaaacaaaaaaaacaaaaaaaaaaaatcagactgatctcattgggcactccgg<br>aatagaaatctacaactcaaggtttgccccactttcaggcaaaggagttgagatttcattgacctttcagtcagtggctaagagatgccagtcagataaa<br>agtttcc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	505	183	NA	intergenic
0	chr11	10594070	10594071	1001672	0	+	1104685630353	NA	NA	SINE	Alu	AluYb8	gatagactggattaagaaaatgtggcacatatacaccatggaatactatgcacccataaaaaaggatgagttcatgtcctttgtagggacatggatgaag<br>ctggaaaccatcattctcagcaaactatcgcagggacaaaaaaccaaacaccgcatgttctcactcataggcgggaattgaacaatgagaacacttggac<br>acaggaaggggaacatcacacaccggggcctgtggtggggtccgggggatgggggagggatagcattagtagatatacctaatgtaaatgacgagttaat<br>gggtgcagcacaccaacatggcacatgtatacatatgtaacaaacttgcacgttgtgcacatgtaccttagaacttaaagtataataat<font color="green"><u>TACTTTTTTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGGGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTCCAGTCCGCAGTCCGGCCTGGGGGACAGAGCGAGATTCCGTTTCAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>TACTTTTTTTT</u></font>attactaagtgaaaaaagcaaggtttggaacaccttgtataatatactatcatttatgtttaaaaaatccacttttggctg<br>ggcgcggtggctctcgcctgtaatctcagccctttgggaggccgaggcgggcggatcacgaggtcaggacatcgagaccatcctggctaacgtggtgaaa<br>ccctagctctactaaaaatacaaaaaattagcccggcgtggtggcgagcgcctgtagtcccggccgaggaaggagagcggcgtgaatccgggaggtggag<br>cttgcagtgagctgagatggcaccactgcactccagcctgggtgacagtgagactccatctcaaaaaaaaaaaaaaaagaaaaatccacttttacatata<br>tgtctata	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MRVI1:NM:130385:9/20	
0	chr11	23479381	23479428	1001673	0	+	1104685626775	ATCTGATTGCTTTTTCGCTGA	CTTTTGAGCTGCATTCCAGAC	SINE	Alu	AluYb8	tcaaatatgccatttgaagttttttcagatcacatttgaaattctacttcactctatttctgttgctttcatgaaatttgaaagtaatggaaggtgtcat<br>catttcattttccctccactagtagcaactaggtgtgagtttgttccatgacagactttagtttcattcacttgaaataggtcccaaagtttcattccca<br>tggtttgtgttgccttgaagtttagctgctgtgcttttgagctgcattccagactacaaatattgagatttctattctttccatgtattgccttgtggga<br>tttatcacagggatacttcagcacttcaactcccaaataaggaagtatttattgtcacttttttgtccatttgatattctatttttaattgtaat<font color="green"><u>NNNNN<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAACC</font><font color="green"><u>NNNNN</u></font>ctagggtttatgttagacctcagctattcagcgaaaaagcaatcagatgaaaataggttatacatct<br>ttgaaagaaattgattacacagactttttttgttccaataacataacttgacttgattagcacgctgatacttttgaagtatggagaggaagtaaagctg<br>ttataatggatggaaaagaaacacactgaggctaagcgacatccctaaagccaccatgaaatatgatccagaagctgaaattctgacacagacaaggaat<br>tccaatttactgcacattgtaattccataatttctcagtatcaatttttaagttaaatataagaaccaggtttataataggaaatgtattagttaatggg<br>gagaaaataaggattaataagatgtagc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	548	220	NA	intergenic
0	chr11	25097395	25097396	1001674	0	-	1104685626238	TCCAAACACTGAGAACTCCAAA	CAGGCATTCTGATATCACTGGA	SINE	Alu	AluYa5	aagcactgtgcaccatcttgtagatgaaatttctgttaactcagcagattgtactttcattccccatgttttgaacaacggttcaggatatcgactgaga<br>agtagcctttgtcctggattttacttccaatctctctcatccaaatgtaaactcacaggcccagttttctagagttctgtgcagttatagatggaatcaa<br>tatgataaaagtaaatggtataaaggaaatggctcaagcatttctttcatggaaatcatggctaggtcagtaagatattggatatagtccaaacactgag<br>aactccaaactcatgctataaagtgaatcaatgcaggtataggtgtgattacaatttgggattagagattttgagatcagtgtt<font color="green"><u>ACCATAGCCATACTTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>ACCATAGCCATACTTT</u></font>atcagagaaggtcaaagtcgagaaactaaaggaaggggaagaatttagaaatcatatgaatcaccaaatgcat<br>aaattgtcattcagataaatatggaaagctcaaattaggtggaagattttaaaaatttatgcttccagtgatatcagaatgcctgagattattacctacc<br>tctttgtatctaatattttctcatgaaaagttaactaatttcatcaaaccatcaaaacatgaagtctgatgctattcgtattatcaacactgtacaaaca<br>aagttattaaggcttagagagttcatctaacttataaagaccacaaacctaataagccttggaacctagattcaaatgcaaaaataccagcttcattgca<br>cttaaccactc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	598	271	NA	intergenic
0	chr11	5841725	5841726	1001675	0	+	1104685273005	NA	NA	SINE	Alu	AluY	aaaaaaagcctacctgatcatggtatatgaacctttcaaagtgcctctgaatttggtttgctaatcttttgttgaggatttttgcatttatgtccataag<br>aaatatagccctgaagttttttgttgttgttgttgtctctgccaggttttgggatcaggctgatgctggcttcatagaatgagttagagaggagaccctt<br>ctccttgatttttttggatagcttcagtagaattggtatcagttattctagggatgtctagtagaatttggctgtaaatccatctggtccaggacttttt<br>tttttattggtagtttctttactactgattcaatttcagaagatgctatttgtctattcaggattttaatctcttactgattcattt<font color="green"><u>AAGAGATTGTGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAGATTGTGTG</u></font>cttcccaaaatttaaacatttcctccagattttctcatttgtgtgaacagaattgttcatagtagtgtctgaagatct<br>tttgtatttctgtgagatcagttgtaacaccacctttgtcatttctgattgcgcctatttagatcctctctttttgtttgttaatctagctggggtctat<br>caatcttatttttttgaagaaccaagtattgatttcattaacattgtgtatatatttttgcatctaaatttcattaaggtcttttcttactttattttct<br>tctgctagctttggggttggtgtattcttttttttctagttcctttaggtgcaaagttagtttgttaatttgagatctttctaccttcttgatgaagtta<br>tatggggct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	126863817	126863818	1001676	0	+	1104685335585	GATAAAATAGATTTGCCCCCAAT	GCAGCCAAATAAAAAGATCTGG	SINE	Alu	AluYa5	gagtgtcccatttttccacgtacagtctgtcatggcttcccttggttaggaaagggaaatcccccaaccccttgtgcttcccaggtgagctgatgccccg<br>ccctgcttcagctcaccctcagtgggctgcacccactgtccaaccagtcccagtgagatgaaccaggtacctcagttggaaatgcacaaatcacctgtct<br>tctgcgttgatcacgctgggagctgcagaccggagttgtttctattctgccatcttggaacggaaaaagcatgcacattttttagtgttttgttttggga<br>ttctttttgatcaaattttatttcatgttgctaaggctatatttttctcttctttttttccagataaaatagatttgcccccaatta<font color="green"><u>AAAAGAAATACTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>GAAATACTT</u></font>actcaatgtaaataatttaggtaagaaaaagaaaattaccgggcacattcactacatataactactgctaacatttttccttccagacttt<br>ttcctatatgcttacacacacacacacacacacacacacacacacacactcacttctaacttacttcccttaacgtatcatgagtgtcttcctaataatt<br>taatagaggaccagatctttttatttggctgcacagcatgccatggtatggagatatacttcatgaaaaaccaagtttagacatttttaaggttcttcac<br>tcattttcccaaaacactttctaacagcttagatcaataatcctcactcccacaatcaatgtgtgatgattcttctcaagaccaatgacaaccatt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	570	274	NA	intergenic
0	chr10	134138535	134138536	1001677	0	-	1104685041655	NA	NA	SINE	Alu	AluYb8	aattataaatgaaataatgtgcaacattattacatttgtacatctcaaagaaaggggcaattttccaggaaaatgtggttttccaaaaattgtctcaaaa<br>ggaaacctgaacactttaagagatgaataaccactgaatgaactgaaagggttttgccaaagaattatttccatacgtgatgccagaccagtacaacttt<br>ataggtgggttagttcaaacttttaaggaacagagctccaatgccatatacattgaaaattcatagaaatatttggaaagctccccacttaattttatga<br>acctagtataactttgatattaaaacttggcaaagatagtatcacaagacgaattataatataatctcaattacgaatgtagatat<font color="green"><u>AAGAATTCCAAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAAGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCACAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTCCAAATA</u></font>attcttaaatgtaaattcagtcaccattttaaataaagaatatatcaaattcacagaatttattccttga<br>aggcaaggatgaattaatattataaaatctaataacttaattatatcaataggttaaatgagaaatataatcatttgattgtcaatagataacaaaaagg<br>catttgataatgtttgatatccattaaccttaattttaatcaaaaccataattaatgttaaaatttgaactgtgcggcaaggcttataaccaaatgctgt<br>agccccttacctaatctgtctgacttctagaaagttcttcctcttcagaggccaccactttcagctctttgcagaaattttttcaggtatttacctacat<br>atttctaaataacaca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	3224386	3224387	1001678	0	-	1104685306922	NA	NA	SINE	Alu	AluYa5/8	tgttaagtatgaaaatgctgaaaaaatatacactgtgtaaaacaaaataaaaacttaagacctcctgttctcagccaaagccattcattctaaagaaaac<br>ctgaaacataagttgaggccatgatgacagtggatggtcagacatgcctcatgccttcctccctttggaattcaggcacagctgtccaaattccattgtt<br>tggaccagcattcacattaaaacagagaccttaaggcccacaaaacagattctgtagccataagataccaacatgagatagcagaccctgatagaaatca<br>aagtattttaccccttatcttaacccaggcatccctgtctattgattccaggtctttagataataactcttttaaccaattgccaat<font color="green"><u>TCAAAGATTTTCT<br></u></font><font color="red">AGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACT<br>CCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCAAAGATTTTCT</u></font>atccacctatgacctggaagcctcttcttcaagttgtcctgcctttccagattg<br>aaccaatgtacatcttacatgtactgattgatgtcttctgtctccctaaaatgtataaaatcaagctgtagcccagccaccctaagcacatgttcttggg<br>atctcctgaggctgtgtcgtgggccattggtcacttatatttgactcagaataaatctgttaaaatattttacagagtttgactcttctcattgacagta<br>attggcaccctacccgtggggtctcagagacgactcagaatcccagaggagttgtctgaacccagagctaaggtaccagcaggggcccattgaaatctct<br>cccaatctcgaacttctcctccagtggaactgg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	41486825	41486826	1001679	0	+	1104685621693	CATGCCAAGTGGTGAAAAAGTA	TAATCTGTTTCCCCTCTCCAAA	SINE	Alu	AluYb8	atgtccaagctcaaggttgttggggtgaggatgagaatcccaattctatggaagaggaaaagggaaatatttgctgaatcataatatggtctaccacaag<br>tgagatgttgctctattgaaaacctgattattaaacaatcaaatcagtgtttggaaaaagtttgattctttgcttgaaattcctggcttgccacatgcta<br>aaaacatcaaactggatttctggcctattctaaggatagtaaagagacagggaccaggagagagaaaaaaatagctttcaaaggggaagtgcaacccaag<br>aaagataatctgtttcccctctccaaagctaagaaatggaggagacctttaggagacaaataagtaaagtgagataaatcttacgg<font color="green"><u>ATTAGTCTTTCTTT<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT<br>AGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGA<br>TTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>ATTAGTCTTTCTTT</u></font>tttt<br>attgaccaatataatgtccatgtttgtgaacatacccagacatgtctgcaacagggagaagagcacgagaaaggcatagtaaagatgagagttttaaaga<br>aggagcctactttttcaccacttggcatgacaagttacctagatctccagctagctagagtttgcactgcactactcctacccacaacgaaggggcatct<br>tttggattagaagactgaaacaagaggtttgaagaatcaccaattggattcaaggatgaggagaattagagaagaagaagctgatcagtcagatatttta<br>tgccaagggactgagtagggagagatcaccagggagttatgcaaaagagccaacaaataaaccctcatgtaggagtgagtag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	524	229	NA	intergenic
0	chr11	47763232	47763233	1001680	0	-	1104685620058	NA	NA	SINE	Alu	AluY	ttgttcccatttagctatattattgattcagttgttaatttctaaagttttccttgtaaggctgggcatggtgactcctgcctgtaatcccaacacttag<br>ggaggacaaggtcagaggatcactttagctctggagtttaataccagcgtggacaacatagcaagtccttgtctctacaaaacataaacaaaattagctg<br>ggcatagtggtgcatgcctgtattcccagctatttaggaagctgaaatgggagaatctggggctgaggctgcagtgagctgagatcacaccactccactc<br>tagcctgggtgacagagcaagaccctgtctgaaaaaaaagttttccttgtaaatacatgctttgaatggtactctaaatagctat<font color="green"><u>GAGTTTCAGATTCTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACA<br>GTGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTCGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>GAGTTTCAGATTCTT</u></font>attagtc<br>atttttgtttttttcaagtgctacagatgaagcatggcgactattatccacttacctggagaggtacaaagtccagaataacttgtatcaccactgtgta<br>atcaacaagctcttgtctcatggagtgcctctgcctaattggcttataaacagttacaaggtaaacggattataacttgtacagagtaagaacccactct<br>ttatcattctggataacttcatgagatgattaaaaatatggactgattgcagtggctcatacctgtcatgcccgcacattggtaggccaacaggggagga<br>tggcttgagcccaggagtttgagaccagcttgggcaacacagggagaccccatctctatttaaatttaaaaatatata	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NUP160:NM:015231:32/36	
0	chr11	56059939	56059940	1001681	0	+	1104685161116	GCCCTAATTATGAAGGCAAAAG	TTCTGAGTTTGAAAAGGGCTTG	SINE	Alu	AluYg6	tggttagaataaagaagttaaattgtaaaatctactgggtaaaataatttggacctcaaaattgttgtagttgagttagttcacggtatttaatccaggt<br>gttgggaagtaatattttatggaaaacctggtgaatgtgtaacttagcaaaatgttatttatttgccaacctatgaaaacaaacagaataaagatcaaaa<br>tattttgcctaccttttttttcccttttaccaagtatccaatcctcacttagctaggacatataaatataagatgtaacctgtacatgtgatcaaatagt<br>acatgtatttgccctaattatgaaggcaaaagagatacatgaatgcttcattggaagcacatttttccaatgatataccgaaa<font color="green"><u>AAAAACTTTTACTATAG<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTA<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAACTTTTACTATAG</u></font>tctacacctaaatcagcattatctgtcactgtctccctcattccctggtatagccatactggtcttgggtcaagccctttt<br>caaactcagaaccttcacagagccgttttttaaccttttttttttttttttttttttaggttcaggggtatatgtgaaggtttttgatacagttaaactc<br>acgtcatgggggtttgttgtacagattatttcatcacccacatactaagcctagtaccaaacagttattttttctgatcctttccctactcccatcttcc<br>atcttcaagtaggccccagtgtctgttgttctcccctttgtgtccatgtgttttcattatttagctcccatttacgtcttcttttgaaaagtatctattc<br>at	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	501	183	NA	intron:OR8U8:NM:001013356:2/3
0	chr11	57530697	57530698	1001682	0	+	1104685161532	CTTTAAACAGCCATCCAGGAAC	GGGAACACTTTTGACTCCTTTG	SINE	Alu	AluYa5/8	aaaggcaagggctgaagataatatagcaatgtcttttttatatttttggccttaactatgccaatctaattagaattcactgtatttaaaatggttcctt<br>ttacttattgaaacacattttagtgtggtttatgtgtaatatcaaatgaagattatttaactcttctcacattttatagatgatctataaagtcagatgt<br>ctttaacatagtagcaagttaaacttcactcttgaattcttactatctaagtcagactacattataatttaagattgtctttaaacagccatccaggaac<br>ataaaactgtagaactactgtgtatttgtgattgggaatagtgcttttgccaacttataaggattagagtagaggagatatacacaaatt<font color="green"><u>AAAAATTATG<br></u></font><font color="red">GCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTC<br>TCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTATG</u></font>tgtgatcataagacttaagataattaaaaacaaaatcacagatcaaaataacaaaaaacaaaaaa<br>acctactgagagccagatcaagatggagtagtaagttcaagaactgcctccactctagaaacataggcctactgaataaagtaaaaagagaaaacagaag<br>gtggcatagtcaggcccaactacaagacaagcgcttttgaagatccaggctggcacagaaacacaaactgtgatcagggctgcaaggcttggtggacttg<br>ctgggttttggatgcagtggcagtcagtggtggcaaaggagtcaaaagtgttccctgagagatgggaaagcagaggcaggttctcagccacggaggccca<br>gggctaaggtgagattcatgtctca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	577	433	NA	intergenic
0	chr11	25561716	25561717	1001683	0	+	1104685626086	TGCTCTTCAGAATTTTGTGCTC	ACAAGAGAGTGAATGGCAGGAT	SINE	Alu	AluYb8	aaaaataaaaaaaaaatacacagacacatggatgtactgtttttctcagcggaaaaaaaaaaaatgcattcctatggactgatggaagcctttagatgtt<br>gagaaaaaaacattgaagatctcaagataaccctcacccatgacactctaactctgcaattaaaattcaccctatagcatttttctttttttcaagtagt<br>tattcaccttctttgtcctcaaattcttaaaaaaataagtatgagaaagcacaatttttccacaagagagtgaatggcaggatagatgagaagcgatgta<br>atgaaatgcggcttcaaacaaggagtatttttaaagtaatcataataccaagagattataaagattacatttcaaaaatagattt<font color="green"><u>AACTAAGTTCCTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTTCAAAAAAAA</font><font color="green"><u>AACTAAGTT<br>CCTTTT</u></font>attatgagcacaaaattctgaagagcatacattatgaaattaaactcacctgaaattcattactttcttgagtcctcaaatgtcatcttcctaa<br>agacagggtttgtttcttattagatctatgtaaataacgtggtatgtaggcagagagaaactaaaactgccttttcatttctggctgctgatgagttacc<br>gctgtgcttgcatgacatttacaagccacgttagtgaggtcaccctcactatactagattctcttttatacattattgccctggataattgtgttggaaa<br>ttgccatcaaatgccttttctgctatgacactaaataatttgacattattaaaacaatgctggtgccaagcaacatgcatcagagtgtaga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	472	167	NA	intergenic
0	chr11	37662872	37662873	1001684	0	+	1104685622841	NA	NA	SINE	Alu	AluYa5	aattgaaaaacacattaacaagaccattcactatgatgaagtaggattcatctcaggtatgcaagcatggttcaacatatgcaaatcaataaacatgata<br>catcatattaataaaatcaagacaaaactatatgaccatttcaagagatgatgaaaaagcatttgaaaaaattcaacatcccttcataagaacaactttg<br>ggtatagaagaaatatatctcaaaacaataaaaggtatataacatacctacagaatataaaatgggaataaattgaaagcatttcctttaaaacttgaaa<br>aaaggcaaggatgccaatttttgccactttaattcaacatagtaagtactggaagccctgaccaatgcaattaagaaac<font color="green"><u>GGATGCCTTTCATTTCTTTTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>GGATGC<br>CTTTCATTTCTTTTT</u></font>aatgggaaagaaaatgataaacttatctttgttttataataatataaaacataatattatatttataaaaaatctacatacacca<br>ctaaaaactgttagaactcataaatgaattttgtaaacttgtaaaataaaaaatcaatgcacaaaatcagtagcatttatgcatttatatattccaacag<br>tgagtaattgggaaaaaatatcaataaagcaaccacatttactgtatctacaaaataatttcataagaataaattttaaaaaaagaagtgaaagaactct<br>agaaaggatattgtaaaatgctgaaaaatgatgattaaagagattgaaggggatacacacaaaaaattgaaagatattccatggttaaggattg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	32848633	32848634	1001685	0	+	1104685624168	NA	NA	SINE	Alu	AluYb8	nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn<br>nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccagctactcaggaagctgagacaggagaatcacttgaacccag<br>gaggcggaggttgcattgagccaagatcgcaccactgcactccagcctgggtgacagagcgagactccatctcaaaaaaaaaaaataataataataataa<br>taataaactaataaacacatagaaaccaaaacaaatgtaacactcccaaactcattcctgaaaaggggcactgcagaaatgttatt<font color="green"><u>AAGATAAGATTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAGAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATAAGATTCTT</u></font>caccaaatgatacacaagcaacccatgctatgtccaaatgacacaaaagctcaaatagcatagacag<br>aggattccccgtgtgtgccctggtttgacttacccagtcttggggcccatcaactcccttggataccacttgcaccaccaaagtgttacaggctgctgat<br>tccatgaaggggacagaagagagggtccccaagacaaaagatttctcagttgctgctaggacactcctggaatcccagccacagaggcagctagccatga<br>gcagcaactagcactcataagcggttgctgctctgcctgataacatgaacaggtaagccctggtgcactgctgcagccaattgctccatccatggaaacc<br>aggcaggctagaccaccag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	33581370	33581371	1001686	0	+	1104685623883	NA	NA	SINE	Alu	AluYa5	ttctcttcaaaagcctagaggaattgtacaaatctgaataaaagtttttttgaaagagtgaaaaataactatagcttgtacaattcccaaggtgtcattt<br>tcctgtcccattaatgctatgctgcccaccttaccccgttcagtttggggagtgagggtgtcaccatccagaagtgataaaaatgctaagtgccatctct<br>tcaccctctgatgggttgagggatagcatgactttaacttctgcatggttacctgttctgcaggtactaacagcatctccttttccaagtcagggaaatt<br>gagtcattcatttcttcactcacaaccaatctttattgaaggccaactatatgtgagacactgttaaaagcaataggcattagtcttta<font color="green"><u>GCCCATCTTTT<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAACAAAAAACAAACAAACAAACAAACA</font><font color="green"><u>GCCCATCTTTT</u></font>agaatggagcttctagtctagggaaaggggtgagggtacactgtaaatcagtataa<br>catatcagtagtggtaaccattgtgaagaaaatagaacagggtaatgaaggggggattagattgttggttaaggaaagtcatttttaagctgcaacttga<br>aaagcaagagagaactgggcatatagagatctgggaaaagggcattctgagcagagggaatagctagtgcaaaattcctgagatgggaacaagcctgatg<br>tgttcaagaaggccactgtgggccgggcacgatggctcacgcctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggagttc<br>gagaccagcctggccaacatggtgaaaccccgt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C11orf41:NM:012194:12/20	
0	chr11	40450595	40450596	1001687	0	+	1104685621969	NA	NA	SINE	Alu	AluYa5	ggcagatcatgatcctggctaacatggtgaaaccctgtctctactaaaaaaaatacaaaaaattagctggtcgtggttgcgcatgcctgtagtcccagct<br>acttgggaggctgaggcaggagactggcgtgaacctgggaggcggagcttgcaatgagccgagattgtcccactgcactccagcctgggtgacagagtga<br>gactctgtctcaaaataaataaataaataaaagaaactcactcaaaaccgcacaactacatggaaagtgaagaacctgctcctgaatgactactgggtaa<br>ataatgaaattaagacagaaataaataagttctttgaaaccaatgagaacaaagacacaaggtaccagaatctctgggacacagct<font color="green"><u>CTAAACACTTCTTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>CTAAACACTTCTTT</u></font>gggaaatttatagcactaaatgcccacaggagaaagcaggaaagatttaaaatcaacaccctaacatcacaattaaaagaactaga<br>gaagcaaaagcaaacaaattcaaaaactagcagaagacaagaaataactaagatcagagcagaactgaaggagatagagacacaaataacccctcaaaaa<br>atcaatgaatccaggagctggttttttgaaaagattaacaaaatagaccactagccagactcataaagaagaaaagagagtataatcaaatagacacaat<br>aaaaatgataaaagggatatcaacactgatcccacagaaatacaaaccaccatcagagaatactataaacacctctacacaaataaactagaaaatctag<br>	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	92248140	92248141	1001688	0	+	1104685402465	NA	NA	SINE	Alu	AluY	ggatcactgtgatccttcagagaatgaaagtgatttaaaaacactaaagcattagattacttagtatcattatggctactaatgaatgataataatcatt<br>attgatatttttgaaagtattaataatagggctaataccaggataatgagattataaataatattttgtgagaacaggttaattttcataaacaagcctt<br>ttcacagaggctgaacaatagatatcactcttctttcactaaaaaaaaaatctgaccacttttaaaaaattccaattgcttttccctctcattgtgttaa<br>cataaaactcctccgaatttaaagttctaaaagcaagacttcttccaaaaggctctgcctcctatgccccaagggtttgcaatcat<font color="green"><u>CTGTCTAGGATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>C<br>TGTCTAGGATCTT</u></font>ttgctgctctttctgataaacagaatgggtaatgaagtgtggttgttagaaatacagttcaggactgcaggagccagacttcctggg<br>ttcaaatccacacccactttgtgaccatgacaaagcaatcagcttctctgtacctcagctgcctcttctatagcgtgcttctaaatggagtttttctgtc<br>tttgtatcccgagtgcttgccacagtccctattccaggggtgtgctggtaaaccagttctctaaaaataaaagccctgatttgtagcatttgctgatgac<br>tgcagtgtaagtacttccaccatggctgatgtcaggctacccgtggtttaacaactgacctgccaaattcctgaatatttaacagttacctcttgggac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FAT3:NM:001008781:21/25	
0	chr11	101853537	101853538	1001689	0	-	1104685399739	NA	NA	SINE	Alu	AluYa5	gaaagctgaccttgtgaaggtgctggggtctagggagattgttatttaagctttcctttctcataagtctaggacagctgtttttccaatgcccttgttt<br>tttacaatatctgcaaacatctgaagacaaagctctgtggttggggagaaaggtgagtgggttttgagttttccctggagttatgattttgtttttgtaa<br>agaatcaattttcaaagcaagtactattgactttaatccgtttttcctcttattttcctgcaagttatttttaaagaattgcatagctccttctataata<br>acattcagagaatgacctgtccagccaatgacactattttggatttgcctctttgtatcagggtgatttctaaccaaggcagaatt<font color="green"><u>CATGAACAATTTTT<br></u></font><font color="red">GAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAA<br>TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>CATGAACAATTTTT</u></font>tcctagggcttcagaatttaatgcagtgaacctttcaaaagtttgtataaatcattccatataggccttaagatgt<br>tcccctttcttctgagtacataattcaaccctagaccacttcaccttagaggaaaaggcctctaatattgtccctatcaggccccataactcagccattt<br>cctggtcaattgtaggaggacctgggagaagttctggccacttattccctctagaggtaagacattcatttgggggctttctggaatgtctgataaccac<br>agtataatcatgggtgtaaagaacaccccttagtagccagtggaggttcctatgaatggggttataaatggccactaatctttctaactcctctctaaat<br>ttgataggct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	99234634	99234635	1001690	0	-	1104685400480	TCTATTTTATGAGCAAAGCCTTTTT	TCAATGTTTCCCTATCCTCCA	SINE	Alu	AluYb8	tcaggtaaagaaagataaatgtttgtttcatctccatttaactatgctactttgagcaagttggttacctccttcaggcacagtttcctaatgttcaaaa<br>tgtttagaaatgtaaataatgcctaatttgtaggattttttgaagttcaaaatgaaggtaaatgcaaaacattcacctgagtgtctagaacataataatc<br>acttaataaatcttagcaattattattagcattgtcattaatgtttaaatttaatctaaatgtctgacatttttaaaaattgtgcaagttggtaataata<br>ttttattgtagcttctattttatgagcaaagcctttttttttcatttctaaaatgaggtaaatcaattaaaatatttttataacatct<font color="green"><u>AAGTTATTTCTT<br></u></font><font color="red">TCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTTATTTCTT</u></font>caaaaaaactctagaaaacaaaatatcactaaattagatgaataaaacttctgccacagaatac<br>tttctaaaggcaagcacatttattctatttttcatgagggttttaaataaatggaggatagggaaacattgatagctttttcaactgttagtattcttat<br>aatggaatttagaaaatagaggtcaagttactaggcctgcttgcatattggtgcacagagacatagagattttgtttaataaacatcctagttccatacc<br>agacattatacaattttttattttggtaatttaatgactgttcaaaaattccatgaattataatttaaataagtctgtaatggttgtgatttcttaggtg<br>gatgatttactatgtttatgaaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	559	223	NA	intron:CNTN5:NM:014361:6/25
0	chr11	105675691	105675692	1001691	0	+	1104685398648	NA	NA	SINE	Alu	AluYa5	ctggtagcttgactgcagttggagtagccaggatcacccagtcctagggccctttcacttaggcaaccattgatcctctggggagccttctttccaaatc<br>ttaagaaggacttggtctcctggttgacctttagaggagattgtccctcttttatagaagttgatggtactttattcccaaaatgtaatattgctttctg<br>aatctgatccacattgataataccatatgttttgactcatttctcagtccagtaaaatgtcagtagtgaggaggagcctcctgtaatccatttcaaatgg<br>actgggttttaagttgctctttggggcagtgtgaatctgaaagagtgcaataggaaatagccttatccaggtttgctatgtttctt<font color="green"><u>GGCAAAGTTATTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GGCAAAGTTATTTC</u></font>aagttcttttaagggtatgattcatcctttctacctttcctcaggattggggatgccaacag<br>tcatgtatttataatctattcccaggacttccaaaaagctttgagtgattttagctatgaaacagggtctattgtttccctggagtgactttggaagacc<br>gaattgaggaattacttcttttagactttcgcaagtatcagtggccttttcagactgggttggatatgctttgacccagccagtaaaagtgtccatgaaa<br>atgagaaggtatttctatcccaaaagagagggcacctgggtaatatttctttgctagtcttccacagggtaggttccctggtgttggactggcttgacta<br>gggcaagaggaaccagttgagtct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	100286604	100286605	1001692	0	+	1104685400238	AAAGCACTTTTCCTTGCAACTC	TTCCTTAAGCAGCGCTTATTTC	SINE	Alu	AluYb8	cggcagcaactatgatactaaaaacagtactatgctttatatagggtcatttatcttctaggacatccccttctacctcacttctcatcttttttccatc<br>gagattattattttattgtgattttattttaaatgattacttaattgaaatgcacatactgtggactgacagaaaacatcccattacagtatgaagtctc<br>tatttttttaaaataatgccatatcaataagaaaacagtgatcatgaacagcatttaggaacaattcatgggttattttccccttccttaagcagcgctt<br>atttcagagaaaattcttagtttcatgtccacaacaagtaacacaagagacaagaggtagctatatggggttacattactaagtccaaat<font color="green"><u>GCCAAGTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>GCCAAGTCTT</u></font>tacatgagcagtaaatcatggcttttggaggagatgtgagttgcaaggaaaagtgctttttgttttctagagc<br>atgcttccctagattatagttgtccctcatgtggcctagtcttttatctcagctctttaattttatgcttaaactgagtgtgcttttgttacctacatca<br>ttggaacccttgagatctttttttctggcctggtggtgtgaaggggcctggtttgaataagagtccaggaagtggttctcagaatgatttttgtattgcc<br>agaaatgctgatgtattggctccaaattaacatttccaaaaatgtcaccctacacaaactgaaaacaaagatacaagtgtcgtcaccacagctgtgcact<br>ctcctcctgaaaccagt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	503	177	NA	intron:FLJ32810:NM:152432:4/24
0	chr11	71998571	71998572	1001693	0	+	1104685115866	NA	NA	SINE	Alu	AluYa5	gaacagctgggccacccctggcaactataggaggagaaggagacgtcagccttgactgtctcacagccttcccatcccaggaacagaactcgtccttgca<br>gagccggaacggagacaaaagtccctgcttctcgctctattaacttggccagagccatggggatcaaagagaaaggtaacagaacaaaggaaacgagggc<br>caaggcaagatcgtgactcataccagccaccagccatgccctcccgcaagcccttggaagtcctttcagatgtcttcccagtggaaggttgggtctgtgt<br>tcagaaagcaaagtgattaactgcaagatgaaggagacatggctgggtccccattcatgtgaacatgatatgaggttgagggtctt<font color="green"><u>AACTGTGGTCTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AACTGTGGTCTTTT</u></font>agcatgagcccacagtgtaagcatgactggcaagaaataaaaatgctcaaactgcaggccatattaatagaggtctgttaacccaa<br>ttgggaagatgacagttcccccacttttatagtctagttagaccatcccctgttcattgtgtcccaggggctgacaagatgacactcatccagaggaggc<br>gacctatgaaacgagggaattggaaaccaagttttgcatgtgactaagactggataacccagggatgcctcatctaaagcagaggagacccagggttatc<br>agtctccaactccaatctctcagaccctcctagatgggggatctgaactctgtggccccatggacagcctggggacccataggatttcacaggaggctgg<br>	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PDE2A:NR:026572:2/31	
0	chr11	67179366	67203409	1001694	0	-	1104685201356	NA	NA	SINE	Alu	AluY	tagacaaagctagtcatcatttcaaattatttatctgttaattacctttatatagctggatgtcaggcaactatcataaaagtaagaacctttaaggccg<br>gatgc<font color="green"><u>TTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTC<br>ACGCCATTCTCCTTCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCTGCCACCACGCCCGGCTAATTTTTTGTATTTTTTTTTTTTTTTTAGTAGAG<br>ATGGGGTTTCACTGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCGTGATCTGCCCACCTCGGCCTCCTAAAGTGCTGGGATTACAGGCGTGAGCCAC<br></u></font><font color="red">AGTAAGAACCTGGCCGGGCGCG</font><font color="green"><u>TTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAG<br>CTCTGCCTCCCGGGTTCACGCCATTCTCCTTCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCTGCCACCACGCCCGGCTAATTTTTTGTATTTTTT<br>TTTTTTTTTTAGTAGAGATGGGGTTTCACTGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCGTGATCTGCCCACCTCGGCCTCCTAAAGTGCTGGGA<br>TTACAGGCGTGAGCCAC</u></font>agtaagaacctttaagttacatttcagaaggcacaccattcccatcaaaccaacaattttagactagttccattcaccaaaag<br>attactgtcatgtgaacttgaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ALDH3B2:NM:001031615:1/10	
0	chr11	73240442	73240443	1001695	0	-	1104685115523	GCAACTGTATACCACACAACTGG	GTTGGTTCCTCTTTCAGCACTT	SINE	Alu	AluYa5	accaagtattaatgtacattttggcataagttcctgacatcttctcggaatggtactttgagaagcactactctaaattactatgttactctgcctcttt<br>gagctgtaattgcagtttatctttcacattatgttataattatgtttctcggtatgtatgtacatgcatgtatgtgtgcattcactgtgtgtgtgtgtgt<br>gtgtgtgtgtgtgtatgttccctgaaactaggaggttccccttaatatctcccagaatgtctaatgcagtgctcaccacatagcaagaagaggctcaatc<br>aatagtttttgaattaattcattaaaaggactttcattaatttagcaactgtataccacacaactggattgtatagtgatatt<font color="green"><u>AAGAATGACAGGTTCTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAATGACAGGTTCTT</u></font>tcaatcatgactgaatgtctcccatatggcaggccttgtagtgggtgctaaagaaacaaagaacacagtccccatccagaagga<br>atgcactgtcagagggaaaaggaactgccacatgaatagatcattcgagcccagagcactaagtgacatgaggtatgtgtcaagtgctgaaagaggaacc<br>aactctctggggcatcagaaagagataaagcacatttttagaactgaagtactgtcagctatgagagctaaagtcacagcttattatcaaatctcctaaa<br>gaacatcttttagcacagttgcactctaatgtataaaggtttaaaagttcaaatttggctgaaggacttaaaataagaccctatgtaactgaaaatact	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	559	244	NA	intron:MRPL48:NM:016055:5/8
0	chr11	88548601	88548602	1001696	0	-	1104685066352	TGGGTCTGCATTACTTGTAACC	AAAAATAGACGGGACAGCAGAC	SINE	Alu	AluYa5	tatttaagaaaaaaaaaagtcacggctcatccaaacaacttttttgagacagaacaggctttgcaggtacatggagcagtgtgtgggtgaagaggaagag<br>aagtttccatggaaatgctgcctctggctggaatcaggaagtcatcacatgatctccacaaggaggcttaatcttttctctctctctttctttcagagcc<br>acaaagagattaacacaagacttcttgtccctggggagccttgggtctgcattacttgtaaccacatgtggcatttcataattcttttctatgttctcga<br>agacagaattcaacttatcatgttcaatttaattaagaattttgccttacacttgccccactatcaggcttccagtgaaataact<font color="green"><u>TGATGAAGACTTTCT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGATAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>TGATGAAGACTTTCT</u></font>tgctctttaagggcttttgtgtctgctgtcccgtctatttttcataatctttagagcctgcttagaggaat<br>tactaaaatgtacttagtcctattaatttcctttacagggttgattttcttaaataggacagacctctttatttgtccccagtataggccactgtctcct<br>ctggcctacacgtgttgtagtcttcagtcttattgccagtcttgggttcctaaatattaaatcccatttagagtgctttcttcctgactctagatgtaca<br>ttctttaggtatcttcagttgtgggatttgaaagggtcctatcctattttgggagattattgtatgacctgacatgaaattactgcaatgctctataaag<br>tagaattaggggtt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	530	202	NA	intergenic
0	chr11	126420529	126420530	1001697	0	+	1104685188557	NA	NA	SINE	Alu	AluYb8	atagactaaggagactaaagacaatgacatgcaatagatgattttttttactggattctggatcagaaaaagagttataaagaacattattaagacaatt<br>agaaaaatgtatatatagacagtattttaggtaatactattgtaataatatcttgggaagtaaatgtcttggtaatgcaaaaaacatcatacttgtgtag<br>gataataccctagttcttagaaaatttaagatatctgtaactaattttcaaatggtttagcaaaaatattcaattgagggagacacacacacacacacac<br>acacacaaacagatcaaaacattagcaatgaaggagaaagaaaaatgagttttcaccatattttcaactttctgcaggttttaaaatttt<font color="green"><u>AAAATAAAAA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTAGTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAATAAAATAAAATAAATAAAAAAAAATAA</font><font color="green"><u>AAAATAAAAA</u></font>cttggggaaaatatgataaactggcattagtttataaattatg<br>tcattatcctgcatctaaattggaattccttccctttcagttcatccctttccccacatctcagcatcatatagcaagagttgcatggggcctcatggcc<br>cagtggggcccaggctcgaacaaatttgcggagaagttttgcagcctgctgccacctctgggctctgctgctgcacaaacagggactattcgtggaagct<br>gtttggctcatcactgaacctaagtgtctggggagcttcagggcctcagtggcctaaggcttcgtgagcccttctgcttagagagttaatgcctgagact<br>aaaatctggggtaacgggacagatttctgctcagcagcaaaagctgc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	42409766	42409767	1001698	0	-	1104685188721	NA	NA	SINE	Alu	AluYb8	aaatggataaattcctcgacacatacaccctcccaagactaaaccaggaagaagttgaatctctgaatagaccaataacaggagctgaaattgtggcaat<br>aatcaatagcttaccaaccaaaaagagtccaggaccagatggattcacagccaaattctaccagaggtacaaggaggaactggtaccattccttctgaaa<br>ctattccaatcaatagaaaaagagggaatcctccctaactcattttatgaggccagcatcatcctgataccaaagccaggcagagacacaaccaaaaaag<br>agacttttagaccaatatccttgatgaacattgatgcaaaaatcctcaataaaatactggcaaaccgaatccagcagcacatc<font color="green"><u>AAAAAGCTTATCCACCA<br></u></font><font color="red">GCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAA<br>ATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCG<br>AGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGCTTATCCACCA</u></font>gatcaagtgg<br>gcttcatccctgggatgcaaagctggttcaatatacgcaaatcaataaatgtaatccagcatataaacagaaccaaagacaaaaaccatgtgattatctc<br>aatagatgcagaaaaggcctttgacaaaattcaacaatgcttcatgctaaaaactctcaataaattaggtattggtgggacatatttcaaaataataaga<br>gctatctatgacaaacccacagccaatatcatactgaatgtgcaaaaactggaagcattccctttgaaaactggcacaagacagggatgccctctctcac<br>cactcctattcaacatagtgttggaagttctcaccaggacaattaggcaggagaaggaaataaagggtattca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	130181134	130181135	1001699	0	+	1104685189399	CAGACAATGGAAATGAGTCTGC	AAATGCTGTTCCCATGAGTTCT	SINE	Alu	AluY	ctacctgggaggctgaggcaggagaatcacctgaacccaggaggcagaggttgcggtgagccgagatcgtgctattgcactccggcctgggcaacaagag<br>tgaaactccatctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatgaggtggtcaccctccacagacaatggaaatgagtctgcaggttccaagaccg<br>ttgtactccacagtcatgctctgactgtaagatcttctactaaaaacaaaattctgtggacctaagcgactagctgtgtacgaggctctgggaacacaca<br>gtgagcagcacaagcagtcctgccttgggaggcctggtctagaggctgcacgtaaagacaaggacaatgtggcttgagaagttcgt<font color="green"><u>AAAAAGAAGCACAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGACCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGTGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAACGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGAGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAG<br>AAGCACAG</u></font>aggtcagaactcatgggaacagcatttgatacagacatggggctaatggggctgggggtaggaagaagccatatcagactatttctttcaga<br>aaaagttggacttcattttcgaaatctaacaagttcacttgcatccctgtgacaattgtctcacttctgaatccaaattcttagctgaggcataaatagc<br>cttagcctgggcttgtcaccagatgaagtccaataccttcacctccagtattttctaaggaaaatatgtccttacgtctctgtcggggaatctccttcag<br>gacagatgagttccagaggtgtccctgtgtgtggcacccaggaggttttcacagtgcaagaaatgtgcctttgggagattcaggatgggtgaga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	571	264	NA	intergenic
0	chr12	858222	858223	1001700	0	-	1104685487550	GTGCACATACATGCACAACAGT	AAGGTGCTCTGGTAACTGAACC	SINE	Alu	AluYb8	gttacagtagttactgaaattcaaatgaattccttcccagtggaattaagatttcattcgtattatttctaaaattcttaagtccaacatggctcaataa<br>aaattggtataattcacatatttcactcattctaggatgcaatcatccctctccactacctgatcattttaacatgtgagaaattgggatctactttata<br>actgataatgtggtacataaaatatggtacattttaaagttgatagcatctcagatgtgatgaaatattagggtaacaatacactgtgcacatacatgca<br>caacagtactcaaaaataaagttgaaaaaaggtcattcagaaaagcataccttctacagggtacttctcaagtgattaggaggactacttaa<font color="green"><u>TTTTTTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br></font><font color="green"><u>TTTTTTTT</u></font>acattccacacagtaaacagtgcagaaatctacatgaaaataaagcatagtttcaaacctagaatatcagacatagctgacacaattctagg<br>gaatgtcataggttcagttaccagagcacctttatttaacctgttatttctaatacctgttacatcaattttggactggtaagactagaagtgaaacttt<br>ggattgtcactgctgtcagtaacgtacccatttacattaaataatgcatatgcaccaatgaggtgatcttcacttcatttctgcaatgagattaacctac<br>ttcaagggttggttacccttagaagaaaaggtagaagtctatccacatgaaaggacaagttacatggaaatcccttttagcaccctttcagaaattaaga<br>	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	547	240	NA	intron:WNK1:NM:018979:10/28
0	chr12	7495248	7495249	1001701	0	-	1104685069300	ATTGGGTTGACAACAGAAGGAG	CTCAAGGTTTGCCTTTGTCTCT	SINE	Alu	AluYa5	taaatgacttgcttaaaagcatgcagctagtaatgacagagctgaaatttgaacccaggtgctctggctcaagcggccacattcctcaccatcatgttat<br>attgcttttcaaaacaaaatacagtttatatggagccaagacatttcaatttccattgtcttatacccacttaagcataaatttgtgaaactgttagtct<br>ttgtaggtaacctgtttactttgaggaaacaagggcaagcctagaataagggccacctccatacagataagaaacaaatctatatgagcaaaattgtcct<br>ctcaaggtttgcctttgtctctgtctagtctcaatttttcttatttttaatgtctatatcacttggtcacttcagtcacctagtt<font color="green"><u>AAAAAAATCACGTTC<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAT<br>TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAG<br>ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAATCACGTTC</u></font>ttggaaaatgatgtact<br>ttagaaataaaaatgtttatctttgccaccttaataattattagattacttttcttaatgactcctttacagaattctctccttctgttgtcaacccaat<br>acaattcattcattattaataatctctctctctctctctattgtacgttgtaatataacagtcctaacatttcttgtttaattggctcctaagtaagttt<br>gtgcatttgttatcattataaatgtatcttttttcttccaattttaaaccggattattactaatgtaatgcagatttctgtttctcttgaaaatcaggag<br>gtctgaaaacattgggccatcatttcaacatgacaacggtgaattggaggtgagtaacctcttcttcc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	500	218	NA	intergenic
0	chr11	117188717	117188718	1001702	0	+	1104685395565	NA	NA	SINE	Alu	AluYb8	aagttagttcaggatctatgccttatcaaccaaattgttttgcctatccaccccatggtgccaaacccatatactctcctatcctcaatacctccctcca<br>caatccattattctgttctggatctcaaacgtgctttctttactattcctttgcacccgtcatcccagcctctcttcgcttcacttggactgaccctgac<br>acccatcaggctcagcaaattacctgggctgtactgccacaaggcttcacagacagcccccattacttcagtcaagcccaaatttcatcctcatctgtta<br>cctatctcggcataattctcgtaaaaacacacgtgctctccctgctgatcgtgtccgattaatctcccaaacctcaatcctttac<font color="green"><u>AGGAGTTGTTGTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCTGCAGTCCGGCCTGCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAA</font><font color="green"><u>AGGAGTTGTTGTTTT</u></font>tccttcctaggcatggttagtgcagtcaaaattcttacacaagagccaggaccgcaccctgtagcctttctgtgcaaacaac<br>ttgaccttactgttttagcctagccctcatgtctgcgtgcagcggctgccactgctttaatacttttagaggcctttcctacaaggtctgagaaggccac<br>cacagtcatttcttcccttctgtcagacataattcctcagtttagccttcccacctctatacagtctgataacagaccagcctttattagtcaaatcagc<br>caagcattttttcaggctcttagtattcagtgacagactaatggtctattaaaaacacacctcaccaagctcagccaccaacttaaaaaggactggacaa<br>tac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	30362336	30362337	1001703	0	+	1104685709027	NA	NA	SINE	Alu	AluY	gccacacaatctggaaacctttttttggaggttgggtgggatctagcccgtgtgctcacaggtgcctgttccccctctgctgacagttattccactaagc<br>tgaagttgcctgtagtctcccacattagacactaagctctgggaggcagggcggctgtgtctgcagtcttgttgtatccccagcacccagcacagcacct<br>gacacatggtagatgttcaatacatgttggctgaattaattattgttttaaaatcatttttaatatttgtgcatgtatgttcacaacaggcttatttaca<br>atagctaaaagatggaaacaacccaagagctcactgatggatgaatggataaacatagtgtgctacggatataagtgaaaattatttagcct<font color="green"><u>AAAAAGGA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAAGGA</u></font>aagaaactctagcacacactgcaacatagaggaaccttgaggatattatgctaagtgaattaagccaggcactaaaggagaaacactgt<br>ataattccttttatatgagcttcctagactcatcaaattcatggagatagagagttaaacaatgtttgccaaaggctaaggggaagagagaatggggagc<br>tcatgtttaataggtagagagtttcagtttgggaaggtgagaatgttctagaggcatatggtggtgaatgccatagatctgtaaacttaaaaatgggtaa<br>gatggtaaattgtatgttatgtgtattttaccacaataaaaatgaccacactgaaaatcttgtttatgatattccaagtgaaaaaaataaaacctctagg<br>tag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	40133990	40133991	1001704	0	+	1104685300470	GTGCCCTTCGATTGATTATTTC	ATTCACCAAAACAATCCCTGAC	SINE	Alu	AluY	tgagtgctaataccaaatcatgtagcaacacagtttcacctactaaatattgccagaccatattgttgaagtctgtgctgccacggtcacctcatcagga<br>tgttttctgtcctgtgactagtggcttcaaatgtactcatccatcttcttgtcccattacatttggtgtgactgatgttctgtacccattaaaattgatg<br>ggagagaacaaagagaagaaaaatgtgcccttcgattgattatttctctgaaagcgtaaatgaaaattctccagtaccaacaagagatttagagtggggg<br>gtttcccccatttattaagtgctttaattagcaggtttacgaaacagagtttcctgtttataagggtgcgtttttcagctcactt<font color="green"><u>AAAATTTAATCTCCT<br></u></font><font color="red">TGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAAAATACAAAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAG<br>CTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCGGAGATTGCGCCACTGCACTCCCGCCTGGGCCGCAGAGC<br>AAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTTAATCTCCT</u></font>tctgaaatgtttgatctttataagatgaatttaatagctgtaacattgtttatagtca<br>gggattgttttggtgaattctcagtaccagaaccaattaaatcagatgccttcgtgtcaggtttttttcttctgatgagctatcataatggctcatttta<br>tgctctgtgatagccaataattaaattgaccattgttgtaagctgaagccaaaaccaaagtgattttggaaggctcaatcttcctaggtttttcttggat<br>ctattgaatgttatctttgtgttcaacaaattgcagaacagcaagatatctctgcaatactcacaacacatttgtttaattacattattgaatgtgttag<br>gggaaaaataaagcctgcccactggct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	494	253	NA	intron:PDZRN4:NM:013377:1/8
0	chr12	37664520	37664521	1001705	0	+	1104685491959	CTGCAGGGATTCATTTGTTCTT	ACTGGACTTGCTTATTTCATGC	SINE	Alu	AluYa5	tacactctactataaagaaacctcactgcagggattcatttgttcttaataatttatttatttattttagaattgggatctcactctggactccagtcca<br>ggccagagtttggtggcatgataatagctcactagcagcctcaaacacccaagcctcctgagtagctaggactaaaggtgcatgccaccatgcctgtcta<br>atgtttgggtttttgtgttgttcagtttggtttggtttggttttttaaattttctagactcagtatctcactatgttgcttaggctggtcatgaactcct<br>ggcatcaagcaatcctcctcccttgacctcagagtcattgggattacaggtatgagccactgtgcctggccccatttgctcttaagaatttaaat<font color="green"><u>NNNNN<br></u></font><font color="red">CCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTC<br>TACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCA<br>GAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAGAATTTAAATG<br>TTTGC</font><font color="green"><u>NNNNN</u></font>ataagcaagtccagtctgcttctaaaaaaaaaattaccgcatcttttatcttaaatatttgctgatctacatatggccaattccactatt<br>ttgagaagagtaagcaattctaaacataaggcttcacaaagagccaagtcatcagaattacacagcccaaggctctagaggtcatataaaaacaataaaa<br>aatctccaatttaatgaatttatttttttctataaaatatctataaagcatatactgagtcaaaccaagttgcttcaggaaaatacacatacacagatct<br>ttcccctttggaaaaaaggaaatatttgacttttaaaattattctgttgaattaaaatattccagttaaaatgaattaggctgtacacatatttaatctt<br>atatt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	700	398	NA	intergenic
0	chr12	42004208	42004209	1001706	0	-	1104685301028	AATGTACCACCCACCAAGACTC	CACTGGGTGGGGTATTAGGATA	SINE	Alu	AluYb8	gatgtccttaacacaaaagaaatggaaacttgcaaataagtgccttgagaaattcagtgttgtttaagactgaaaataagacacataaaaaatttaatta<br>aataaagattctttttagtcattaagttttagaatggagaaaattctgtgtgacatttccctgctgtttcattagcactaatgtctcactgggtggggta<br>ttaggataaaatcctaagcaaatattttcagtattgcaagaagaatgctaagtctgctgttagaagaaaatgaagaaagtcaaagaaggaaagacactga<br>agcttttgtgacctgtctctgccatgaatctgcagggatttgagaatgaaagagggattcaagaatggctcaattaaaaagttacatt<font color="green"><u>AAGAATATTTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATATTTGG</u></font>aaactagagtcttggtgggtggtacattaaaagggaaaaaatcatgggaaatgaagataagtgcca<br>gagaaaaaaacagaattgggaaggagaggtaaacatttagaaaataaatatttaattagtaagttggtaaatccactaaatttaaaaaaagagattaata<br>tcagtttcaagaggacagtttgaagagcaggctgtatcagcagtcacacctaaaacagggaccgaagtcaaaaaaggcatgggaaaacaaatcctgtgga<br>acttcccaaatctcatttcagtcgaaactgtccagtttctcttttacttttttttttaaatcttttgaaaacaatgaccaggggtttatcactttcagct<br>ttaccattttacgttacaggct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	576	243	NA	intergenic
0	chr12	18642901	18642902	1001707	0	+	1104685705423	NA	NA	SINE	Alu	AluY	gatatagatcaatggaacagaacagagccctcagaaaaaacgccgcatatctacaactatctgatctttgacaaacctgagaaaaacaagcaatggggaa<br>aggattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggaacccttccttacaccttatacaaaaatcaattc<br>aagatggattaaagacttaaacgttagacctaaaaccataaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaaggacttca<br>tgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagaacttctgcacag<font color="green"><u>AAAAGAAACTACCATCAGA<br></u></font><font color="red">ACACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGAGCGGTGGCGGGCTCCTGTAGTCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCAGAG<br>ATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACGCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAAACTACCATCAGA</u></font>gtgaacag<br>gcaacctacaaaatgggagaaaattttcgcaacctactcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaa<br>caaacaaccccatcaaaaagtgggcgaaggacatgaacagacgcttctcaaaagaagacatttatgcagccaaaaaacacatgagaaaatgctcaccatc<br>actggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacaggtgctgg<br>agaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaaccactgtggaagt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PIK3C2G:NM:004570:29/32	
0	chr12	9260506	9260507	1001708	0	+	1104685070068	NA	NA	SINE	Alu	AluY	tgccctgaatggcttttgggtaaacaatgaaattaaagcagaaatcaagaaattctttgaaacgaatgagaacaaagatagaaaataccagaatatcgga<br>gacacgtctaaagcagtgttaagagggaagtttataaggctaaacattcacatcaaaaagttacaagatctcaaagtaacaacctagcatcatatctaga<br>ggaactagagatataagagtaaaccaaccccaaagctagcaggagaaatgaaataaccaaaatcagaatttaaatggaggaagttaagatgcaaaataaa<br>taaataaataaatacaaaagatcaatgaattgaggagtggatttttgaaaggatagataaggttgatagaacactagatagactaa<font color="green"><u>AAAGAAAAAAAGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTCTACTAAAAAAACACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGTCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAGAAAAAAAGAG</u></font>agaagatccaaataagtacaatcagaaatgaaaatgagaatttaccaccaactccacagaaatgcaaaagaacctcagatactact<br>aaggacacctctgtgcaaacaaactagaaaacctataagaaatggataaattcctgaaaacattcaacctcccaagactgaaccaagaagagactgaatc<br>cctgaacagagctataataatttctgatattgaatcagtaataaaatgcctaccaaccagaaaaagcccaagaccagattcacagccaaattctaccaga<br>tacataaagaagagatggtaccattcctattgaaattacttccaaaagttgaggaggaaggactcctccctaaatcattctatgaggctagcattatctt<br>	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	14065146	14065147	1001709	0	-	1104685704216	NA	NA	SINE	Alu	AluYa5	gttggaaatttcaacatccttcttttagtaattgacagaactagacagaatatcagtaaggatattcacgacttgaacaacaccattaaccaacttgatg<br>taaataatatatagagcactctatccaacaacagcagggtacacatttttttcaagtgtacatggaacattttccatgataaataataatactatagact<br>gtcaaacacatctcagaatatgatttttgactaaaaaaattcaggaaaccaacaacggaaaagtatttaggacttcacaaatatttggaatttcaacaaa<br>tagttttagaaaaacagtgagtcaaagatgaaatcaccaggtaagttagaaaatatgcttaactgaataatgattaaaacctaatctatc<font color="green"><u>AAAATTTATG<br></u></font><font color="red">GGCCGGGCGCGGTGTCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAATTTATG</u></font>gaggtagctaaagtagtgcttacagacaaacttaatgttaagtgcttatattagaaagaaaatagatctaaaatcaatttcctaag<br>cttccacctcaagaagctagacaaagaatggtaagttaaatctcaagtaagcatagggaagaatataataaagaccaaaaaagaaataaatgaaatacaa<br>attggaaaaacagagtaaatccacaaaatcaaaagtttgtttatttaagatcagtaaaactgataaacatttagctacactaacaaaaaaagagatagaa<br>gacaaattaacaaaatcaagaatgaaagaacatcaccacagatcctgcagaaattaaaagaattagaagggaatattatgccaatgaattagacaatgta<br>gatg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	14277474	14277475	1001710	0	-	1104685704314	NA	NA	SINE	Alu	AluYa5	ctggatgggtaggataggggagttgtaaggagaatctgtaggctttaagaggccatgtggtaacaggcgggtgataacaggctttaacccttttaaagcc<br>tgctgtgggatgggatattggcattgagtggggtaagggtgattacgttttaatgggatggtaaagggtgcctgatcggtcaccaaggagggagtagagg<br>tatcccatatttgtggattaaggtacggagacatgagaggaggatgtgaagggagctttgaactggggaaaagggtggcaataacgtgtggctatagccc<br>aggaatagtcatggaagcagataatttagttaaaatgtctcgacctaataagggagctgggcaggtggggataactaaaaaggagtgcataaaataa<font color="green"><u>TGT<br></u></font><font color="red">TGTCCAGGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGCGGATCACGAGGTTGGAGATTGAGACCACAGTTAAACCC<br>TGTCGCTACTAAAAATACAAAAAATTAGCCAGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCAGGAGGCGGAGCTTG<br>CATTGACCTGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAGCATGTT</font><font color="green"><u>TGT</u></font>caagttg<br>gcaccagaattggggagttttaagaggtttagaagcctggtcgtgaatacccacaacagttacggaaacagtcccttgaaaagaaggtaatgtggagtgg<br>gtagcctccatattgattaagaaggggacggagttaccctccactgtaagagttacccaaagcgtctgtgatggtccaggaggcttccgaggcaatcagg<br>cagcatcagtcttcagccactaagccgggaagatctgggaaggagtcagtcagagagccttgggccagagttgcaggggctctgggagtggctgccaggc<br>gagttggacagtctcatttccagtggggtcccgcacagatgggacacggcttaggaggaatcctgggctgcgggcattccttggcccagt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	69811747	69811748	1001711	0	+	1104685238805	NA	NA	SINE	Alu	AluYb9	atataacctgtagtctggtagattatttattgagttactttaaatcttagcgacatactttaagtattaatgacagcaattccccttcagggcagagcct<br>ctttaattttgataagatcagtgaaaaagatcagtagtcaaggaaagggtagtttcccctgagatactttctatttccttttataaattattttcagtag<br>cagttactaaaccaaaacatttctagattgaaaagaatcttcgggtattatagatattaatattaattcattgtgatttatagtggtttttaatgtatct<br>gcctctcaactagattgtaatctcctagaggatccagaagcatgtctgatcctagcaagggtctgtctgacatgtagtaggcactg<font color="green"><u>TTACTGTTATTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>TTACTGTTATTCTT</u></font>taaatgaaatactaatatcaattgtaatttttgtacacatttcttctaagcagaacgaacaacttatgaagggacaga<br>tgtcatgttcttcatgaagccatatcctgaaccccacagactaagtgagatggggtcccataacaccttgcacccatctctatccaagagatactagtag<br>accattggattgaagttgcctaactatctttctctcttccttacttgagcatcagctccatgagtgcagacattgtgctctgttcaggaatgaattcccg<br>gtgactggtagaaagcttggcgcataggaggtggtcagtaagtatttgatgaactgatcaataagaagaactaggacatccatgtattgacattcacaag<br>tcacataa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TSPAN8:NM:004616:7/9	
0	chr12	74217369	74217370	1001712	0	-	1104685237810	AATGCATGAGTTGGAGAAAACA	TCCTGAAGACACTGAACTGCAA	SINE	Alu	AluYg6	acagaattagccaggcatggtggcacatgcctgtaatcccagctactcaggatgctgagacaggagaatcacttgaacctgggaagcggaggttgtggtg<br>agctgagattgtgccattgcactctagcctggggaacaagagcaaaactccatctcaaaaaaaaaaaaataataaattgtgacaatgctttgttatttaa<br>ggggaaatatacattttggaattaggtaagagttcattttaatcaaaacatagcaacaccatcacatggaatcgctcaagtctgccaaatttctagttaa<br>aatgcatgagttggagaaaacatttaagaatatttgatatgtttataccaatctaggactgtttatctctggactactttacat<font color="green"><u>GAAGATTATTTTCTTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGATGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCACGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>GAAGATTATTTTCTTT</u></font>taggtattttaagctgcagcttttttagcttgttttgttatttgtaaccaaacaaaactaatggaattcataacagatata<br>gtacccaagaatgtgtcaaatatcaacaaggtagcagacatcaacttttcatctaacctgaagtttagaaaattgcagttcagtgtcttcaggaatttct<br>tgattctacctgttctgtagtgacagcacctgaaatcattgttttattgtctctctttgcaagagtgtgggtatccccaagcatgcctaagggaaatcag<br>gggcatatgttgagttcccttctctgatcagtttacatttttatttatagttatatttttgtgtttaaggacaatacatgccagtcaactacagcataaa<br>act	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	594	276	NA	intergenic
0	chr12	82689628	82689629	1001713	0	+	1104685534804	CTGCCAATTATTCTGCTTGCTT	TGGTTTCTAGGTTTGACACAAATG	SINE	Alu	AluYb8	aactccccaaagtgacatgaattcacatacaatgggcacaagggtttcagttttacttattacaagcacatcatagaaggaaattgttgtatttatgtgt<br>tatcaggctagtttcagatatcctacatgccactcctggtgtggcattaaacaagtgacctaacctctccctctgcctcagttgaatttgcattacagtg<br>aggcataattggttaccccatggagatgtcagggttaaatgatataacccatatggcacatactaaacttaatatctggcacgtattaagcaatcaataa<br>ataactctaagttgttacaccataataagatgaattcctaatttggtttctaggtttgacacaaatgtaactctaaatggagtat<font color="green"><u>ATGTGACCTTTTTCT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>ATGTGACCTTTTTCT</u></font>ttgttgacttcaaaatgtctctacccacttttttgctatgaagcaagcagaataattggcagcaat<br>actagccttcttgttccccttgtccctgaatactctttgctacactctgaccctaaagacagggtgatacttttcaaaattctattcatgtctacctcat<br>ttcattcagaatttacaatataaccatggatgccactatgctattttggggccataatagaaactggactttgcgttattggttctatactcaaaatgtg<br>gtccattgacatgcagcattaacatcactctggagatcagagatacatagctctaacactcactgaatcagaatagcagatctcactgaatcagatgcag<br>atccccgcatctctacccc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	453	120	NA	intergenic
0	chr12	43350644	43350645	1001714	0	+	1104685301299	NA	NA	SINE	Alu	AluY	aatgaaataattgatcatcgttataccagccctacaaaaaatgtttaaggtaatcctatatctgaaagtgaaagaaagatatctaccatcatgaaaacac<br>aagaaagtataaaactcactggtagagcagatatacaaataagaaagagaaaggagtcaaatattatcactataaaaaaaccccatcaaattgtaaagta<br>aacaacagaagaggaagaaagaatatgtaaaacaatcagaaaataattaacaatatgacagaaatccccacctattaataaaaaccttgaaagtaaatgg<br>cttaaattcatcaattaaaagatataaaacagctgaatgtattaaaaaacaagatgcaagtacaagaaacctatttcatcta<font color="green"><u>AAAGATACACATAGACTA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAGATACACATAGACTA</u></font>aaagagaagggacgaaaaaaaatccatgcaaatgaaaaccaaaagtgtgaaggagtagctatgtttatatcagaaat<br>tgacttcaagttaaaaaacataaaaagggccaaagtaggtcaatatagatgacaaaggaatcaattcagtaggaagatacaacaattgtaattgtatacg<br>cacctaacacaagagcacccagttatataaagaaaatactattatagctaaagagagagaccccaatataacaatagctgtgaacttcaacaccctcgtt<br>ttagcactgggcagatcatatagacagaaaatcaacaaagaaagatcagacttaatctgcactacatactacatggagttaacatttacagaaaatttta<br>cccaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NELL2:NM:001145110:13/21	
0	chr12	43417414	43417415	1001715	0	-	1104685301307	CCATTGTATTCATTGGGACAAA	AGCAGGCAAACAAATGAGAAAT	SINE	Alu	AluYa5	ttaaatgacaatatggaattaatgaagagcaaaacccacgtataatgaccaatagaaagtggaagaatgattctctgtgggccaatactcatttaatgat<br>gcaggttgatcacaattgttgtgtggccatgtaacaatactctgagagctggacttatgtatttaccatggggggattattacagagcaataagaagtat<br>gtggcaaaaaccaattacagaaaaagaaatgatttcgaattaaaataacactaataatattcttagagatttgttgcatgaaaaatgagaaaggaatttg<br>ggaggagcaggcaaacaaatgagaaatctgcctattaaagaggcataattttatcaactaagaacaaacaagttttttgtttattat<font color="green"><u>AAAAAAGTTATTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAAAGTTATTG</u></font>ttgtgaactaaatgtgtgcatgttgagactgtttgtcccaatgaatacaatggcaatactgctttattctgatcaattatgca<br>tgaccaagaaaatggttatttagcagctagacatgagggacttatagcaaaataaaatactcaaaaattaaacatactttatcttaatctgagcaacttc<br>actctgaatattagaaaagtaccaattttaatatagtatgtggtatttattttgaatttttacataatttttacaaaatagaaaaatattacctatcaat<br>attttgataaaatttcaatatctaaaaataatatttttatgtaactacagcactgaaaataaatcaggacagtaaatcagatcaatgagtaaacaaatac<br>gaga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	465	149	NA	intron:NELL2:NM:001145110:10/21
0	chr12	43705822	43705823	1001716	0	+	1104685301380	NA	NA	SINE	Alu	AluYa5	cctacacaaagaacacacccctgcttgattttagccctatgagacccatttcagggtctgacctctataactataaaataataagtacctgttgctttaa<br>gacactcagttcatggtaatttgttacagcaacaatagaaaactaatacactgggtatcaggctcactgagccaattgctgaagaaaccagacaaagagc<br>acatagttcccaccctaaaggagctcaccttcttatgggaggggtgacccatgaacattcactctgtaacatagcaccaggaaggcagctactatgtaac<br>atagcaccagaaaggcagctactatgcattctggtgcttaataattatttactgaataaacaagtaaatgaatgtcataagtactagaa<font color="green"><u>AGAAAGATCTG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AGAAAGATCTG</u></font>caaagtgcactggcatcacaaaggaggaaatgatgagttcggagaaaacagtcaggttgagtcaagtataaaagaacaataccgtttaa<br>gagagaaagaaccaaagccaattcaaacagttactagtatgtctgaaagcccaaggaataaagtctatccaaggaaaagtaagcagtcatcaaggctggg<br>gaaaggcataaagcagaggctgcatgagggcaaccatatccagcctgcaaatgggctttttttggtcttagcatgttggttaagaattctgatttagttg<br>tccacatttaaaaagcgggaagtttcacataaagtccagatttctgacacctcttcaaaggtaaccacactgggctcagagtgagtagcaggtgcctctt<br>	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DBX2:NM:001004329:2/4	
0	chr12	53442004	53442005	1001717	0	+	1104685052707	NA	NA	SINE	Alu	AluYa5	gtgagccgagttcatgacattacactccagcctgggcaacaaaagcaaaacaccgtttcaaaaaaaaaaaaaattcacaatagcaaagacttggaactaa<br>cccaaatgtccatcaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaaggatgagttcatctcctttg<br>tagggacatggatgaagctggaaaccatcattctgagcaaactattgcaaggacagaaaaacaaacaccgcatgttctcactcataggtgggaattgaac<br>aatgagaacatttggacacaggatggggaacatcacacaccagggcctgtcatggggttgggggagaggggaggggtagcatta<font color="green"><u>AAGATATACCTAATGT<br></u></font><font color="red">TGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGG<br>GCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCA<br>GCCTGGGCGACAGAGCGAGACTCCGTCTCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATATACCTAATGT</u></font>aaatgacg<br>agttaacgggtgcagcacatcaacatggcacatgtatacctatgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtataataagaata<br>gtaaaaaagaaagctttggaacatgaaaaaaaatcagaaataattcagagagtgctgctattactacatttattctcattatactagagtttctagcctg<br>attattaaaatcagaaaaggaaataaagggtcaaatagttggaaaggaagaaagaaaaaaatgtcgttatttgtggatggcctgattatctatataaaat<br>caaaaatcaaaataacctataatttatcaaaattaatatacttcaatatcttcatttataaaatatagataataat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	59824221	59824222	1001718	0	-	1104685241322	NA	NA	SINE	Alu	AluY	acaacctacagaatgatgagccaaaaaaacctcttctctttataagctatgcagcctcaggtatctctttatagcaacacaaaaagggactcacaaaaat<br>aattcttataaaaattatgtgattatttatttaatgctgtattctatactactatatcataacttagtaaagaacaagatcacacttgtgtagttcactc<br>ctgtgtacccagtgcctaactagtacttagcatttgttcctcattcaccatatatttatttatagtccctctttcaaaatcatcaggtacaaataatatt<br>ttctcaacaaatgttgataaaattatgtttatctaaataaatacataaattcaaataatattataccaagaataattgaaacccc<font color="green"><u>TGTCTCAGATTTCTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TGTCTCAGATTTCTT</u></font>ta<br>gtttgtgtcattctagagtttatactttaaatgaaatgtaaatatgcacagaatatgtttgggaatcaattacaccacaataaaccaacgagaaaaatat<br>acaatgcaaactatattcctttattagttagggtttttcagaaaaacaaaccattaggaaatgtataataatatttactctaaggaaggggctcacatga<br>tgatgaaggaggctgggaagtcctacgatctgccatctgcaagctgaaggaacaggaagttctgtggtataattcaaaaacttgagagctagaaagtcaa<br>tggtagatttcatccagtttgagcctgatgtcctgagaaccagggttgctttgtcagaagaaagttaatgtcccagctcaagc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	46016959	46016960	1001719	0	-	1104685301895	NA	NA	SINE	Alu	AluY	aaaaacacaaaaattagccaggcatgctggtgcatgcctgtaatccctgctactcgtgaggctgaggttggagaatcacttaaaccctggaggcagaggt<br>tgcagtgagctgagattgcaccactgcactccagcctgggcaacagaatgagattctgtctcaaaaaaaaaattatatattgtctaagtactataacatt<br>accctaattgtgtatagaaaaattactaagactattacaagcaggggagggtaaagggaggcataatttttatacttcactcaaactggtaaaatgaaaa<br>cttcaatagactgtgattagttgtgcatatattatgtcacacctaaaacaccaaaaaataaaaaagttatacaaatacatacactaaaaaa<font color="green"><u>TGCTATAGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCACAAAAAAAAAAAGGAAACG<br>ACACTGGAATACTCACCGGCTAGTGCTACGT</font><font color="green"><u>TGCTATAGG</u></font>aaatataaattgaattctaaaagagtaactctcagaaagacaggaaagacaaatgaaaac<br>aaagatcaaacaaaaaacaaaaccaaaaaaattacagtaaatggaaatggtctaaatatatcaattaaaagatattgttacagtggattataaaacatga<br>cccaactatatgctgtctacaagaaactcacttcaaatacaatgatataggcaagatgaaagcaaaaggatagaaaaatatattgtgtaaatattaattt<br>taaaaagcaagagtagacatattattaggtacactaggctttagaaaaaagaaaattaccagagacagagagggatattatataatgataaaagggtcag<br>tccaccaaaagacatagtaatcctaaatgtg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	114215476	114215477	1001720	0	-	1104685141787	NA	NA	SINE	Alu	AluY 	ctatgagtttgactctttttcagttttcatataaaagtgagatcatgcagaatttgtctttctgtgtctggcttatttcacttagcaaaatgtcttcgag<br>gttcatccatgttgtcacaaatgacaggattgcctctttttaaatgtttaatagtattttattgtgtttatatgatccccaaagcacaggcaacagaagc<br>aaaaattgacaaataggattacatcaaactaaaaggcttatgtacagcaaagggaacaatgaacagagtggaaagatgacctacagaataggagaaaata<br>ttttcaaattgtacttctgataaaggattaatacccaaaatatataagaaactcctagaactcaagaaaatgagtaacctgatt<font color="green"><u>AAGAAACAGGCAAAGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAAACAGGCAAAGG</u></font>catgaaaagacatttctcaaaagaagacctacaaatggccaacaggtttatgtaaacatgctcaatatcactgatcatcagggaa<br>atgcaaatgaaaaccacagtgatttatcacctcacacctgttagaaaggctattatcaaaaaaagatcatgaatgttggccagggtgtggagaaaaggga<br>actcttttacactgttggtgggaatgtaaattggtgcagccactatggaaaacagtgtggaggttcctcaaaaaactaaaaatagaaccatttgatccag<br>caaccccgcttctgaattatatacccaaaggaaataaaatcagtaagtcaaagagatatttgtactcctatgttcattgtattattcatatcagccaag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	96019491	96019492	1001721	0	+	1104685531254	NA	NA	SINE	Alu	AluYb8	aaataccatagactgagtgggttatagacaacaaaaacttatttctcacagttttggaggctgggtagtccaagatcagtagatgattttggtgccagta<br>gattcagggtctggtgccagtagattcaatgtctggtgagaactcccattctggaagaagggttgaaggagctctccagggcctctttcataagggcact<br>aatcccatttatgaggacaatgccctcatgacccagtcatttaccaaaggccccaccttctactaacatcatattaggggatagaatttcaacatatgaa<br>ttttggggagacacaagccttcagtctataccacctactgtatctgaaggtaggtgaatctaaattgataaaaattctaacttttt<font color="green"><u>CTACATTTGTTTTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAAAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CTACATTTGTTTTT</u></font>ggcaatacaatggataaaagatagttttttcaagaatggtgctggaaaaactgaacatcca<br>caagcaaaaagaaaataaaaggaatctagacacagaccaccttattcttttcagaaaaattaactcacagtggatcacagacctaaatgtaaaatgcaaa<br>actatgaaactcctagaagataacataggagaaaatctagataactttgagttcgataatgactttttaggtataacttaaaggcacaatccatgaaaga<br>aatagttgataagctggacatcattgaaattaaaagtttctcctttgtgaaagactttgtcaagagaaaaaaagataagccatagactgggagaaaatat<br>ttgcaaaaggcatacctgataaagg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	103841294	103841295	1001722	0	-	1104685529423	NA	NA	SINE	Alu	AluYb9 	tttgggacttctctctttttttcatagtctagctaaaagtttgttgattttatcttttcaaaaaataactttttgtttcattgatctgtatttttttagt<br>ctgaatttcattatttctgctgtgatctttatttaatttcttttcttctactaatttggggtttgaattgttcttgcttttctagttccttggggtgcat<br>agttaagttgtttatttgaagtctttct<font color="green"><u>AAAAAATTAGCCAGGCGGGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGT<br>GTGAATCCAGGAGGCGGAGCTTGAAGTGAGCCGTGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAA<br></u></font><font color="red">TTTTTTTTTT</font><font color="green"><u>AAAAAATTAGCCAGGCGGGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGTGTGAATCCAGGAGGCGGA<br>GCTTGAAGTGAGCCGTGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAA</u></font>attttttgtatttttagt<br>agagacggggtttcaccttgttagccaggatggtctcgacctcctgacctcgtgacccgcacgcctcggcctcccaaagtgctgggattacaggcatgag<br>ccaccgcgcccggcctctattttttgacatagtatttattgttataaactttcctcttaatactgctattgctgtattccatagattttgacatgttgta<br>ttttcatttt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SLC41A2:NM:032148:1/10	
0	chr13	28436891	28436892	1001723	0	-	1104685354522	GCAGAGATGCTGTTCAGAAATG	TTGTTTCAATGAACTGGGTCAG	SINE	Alu	AluYa5	gagagatcataaatcacaaccatccgtgtgaacttcattatgacaacacgggttaaaacaagagactctctccactatgttaccaaaatggaaagtgaca<br>cacatatgccatggggtgattgcaattactgcgctgctcatcagctaaagggagcaatcgcacacaaaccgcatgtttctaaaatgggagccccatcaaa<br>acagggagcatatgggactatcagatatacatgcacagcaggagaccctgccaagatgagcagagttgagctcgggaacgcagagatgctgttcagaaat<br>gtgcaatcgagaaaggccagccatcaccacaaggtatggatgggactttgggcattagggttcttctaacccaagacccaggcat<font color="green"><u>CTTTTTTGTGTTTTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCAACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>CTTTTTTGTGTTTTT</u></font>cttcttgtacatgactaaagctcagacagactgaaacactgacccagttcattgaaacaatgacccagttcacttg<br>aggtccccaaagcaatgcccaaaaagcagcaacagatctgtttatccccaatgtcacttgcaactctgcagacacacctgcaatcaccatccttcataat<br>tcagcgtacctctcaagtgccaggcagtgtttaggtgcagtggctgtgccagtgaacaagacaagactggccggtttgacaaatagagatgcgttgctgc<br>tggtggtgttaatgggtcggaattttattctaagctgtgcaaggaatgacacaatccaatttacattttcaaatttctcttaatcacagaataaagacca<br>gatgagagg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	505	182	NA	intergenic
0	chr13	35614817	35614818	1001724	0	-	1104685160224	NA	NA	SINE	Alu	AluYa5	tcaaggatgcagaaatcttgagagctatcatagcatgttttctgccagtagtcccttatatttgtctttttataaatcttattatggctttattctggtt<br>t<font color="green"><u>AGGCTGGGCACGGTAGCTCACATCTGTAATCCCAGCACTTTGGGAGGCTGAAGCAGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGTTAACAC<br>GGTGGAACATCATCTCTGCTAAAAAATACAAAAAAATTAGCCGGACGTGGTGGTGGACGCCTGTAGTCCCAGCTACTCGGCAGGCTGAGGCAGGATAATG<br>GAGTGAACCGGGAGGTGGAGCTTGCAGTGAGCCAAGACTGTGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACCCTGTCTCAAAAAAAAAAAAAAAA<br></u></font><font color="red">NNNNNNNNNNNNNNNNNNNN</font><font color="green"><u>AGGCTGGGCACGGTAGCTCACATCTGTAATCCCAGCACTTTGGGAGGCTGAAGCAGGCGGATCATGAGGTCAGGAGATCG<br>AGACCATCCTGGTTAACACGGTGGAACATCATCTCTGCTAAAAAATACAAAAAAATTAGCCGGACGTGGTGGTGGACGCCTGTAGTCCCAGCTACTCGGC<br>AGGCTGAGGCAGGATAATGGAGTGAACCGGGAGGTGGAGCTTGCAGTGAGCCAAGACTGTGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACCCTGT<br>CTCAAAAAAAAAAAAAAAA</u></font>gttgttttctttctaacttctgaagttagatgcttagttcattggttttctaaagtattttctaaaggccattatgatttc<br>tcctttgaacaatgtacaac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	 RI sequence unavailable	NA	NA	NA	NA	intergenic	
0	chr13	36847995	36847996	1001725	0	-	1104685159858	ATTGAAAGGAAGCAGCAAAGAC	ATGACTTGACAGCTCAATTTGG	SINE	Alu	AluY	ggagacagtcgcaggcagagaagaaggcaccagggatgggatgctgccagtggtcagaaattgttccaagggcagggcaccactgtacctggtagccacg<br>atgcaaacagaggttaaatagggagtatgtgtggggaaaccataggaatagtatcgaacagataagactggcacagatgatgcagtgccccaaaagccaa<br>ataattgatgctagggaaacgtgagtttttaagagaggtgatgaaagcagtattttagggagatttatctcacaggagaatactgagagcccaatacaaa<br>taatgctctgataatccagaggtaagatgatgaaatgctatgactcaaagtatacacccaagaattgaaaggaagcagcaaagacaa<font color="green"><u>CCTTTATTTATTT<br></u></font><font color="red">GCGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>ATAAAATAAATAAATAAATAAAT</font><font color="green"><u>CCTTTATTTATTT</u></font>tcttggtactaaaaataggattcaaggagaaagaaaaatcaatcataagttttctaacttaaaa<br>cgctgaaataatagtatctatagggagttgagaatgaaaattattttggaaggatagattggttcaatttcaggttcattaaatttgagataaagtgatg<br>atagtgtatacccaaattgagctgtcaagtcataaaatttttctaaatatccctcatctacacatttctaattaaattagaaatcttattcaaaacaacc<br>aagatcactaccattttatttcatggataaatgggaaaatattgtaagaattctcattattccatttccattaatatatttccaagcagctctccaaatt<br>catctatatcccttttattacac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	470	236	NA	intergenic
0	chr13	33636966	33636967	1001726	0	+	1104685061014	GCCCCTTAATCACTGTTACTGC	GAAGTGGGCATAAGCAAAACTC	SINE	Alu	AluYb8	aaatcactaagacctgtgtgtagtgagtcttccaactgacatatctttcaaccagagaagccctcctttatccatgaataagcatcagttgctattctct<br>acatcatggattcctctccattaccaccttagccctgaaaacacttctatctactcctaatataagccacgtgaaaagctaagatttgttgctatttttc<br>attatgctgagactgatcacagaggcatactatggcaatcacagacactaacctggcggtaagtcagggcaatttcattacaagtgcacgcttgcatttt<br>atgccccttaatcactgttactgctctcccaagcagcacattctttcagcttggattttgacaatacgttctttgtcagaggaatgctg<font color="green"><u>AAAGAGGGTGA<br></u></font><font color="red">ACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTA<br>GCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGAT<br>TGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAGGGTGA</u></font>aaggggctg<br>ctattgccagaacagttccctggcacctgaggcggaggtacttaaaaagccactgtgtgcatttacacttgctccattggtgcacacagccttactcaaa<br>agaataatgataatgcaggtaacagtcttatctggctcagcggttttaccttttcgtagcctccagatgtttagtggagttttgcttatgcccacttctt<br>cagaaaacttacctagttgtgttaaggtcaaaggtacaatgcaaaattccctgagacctgaagagcagctctatctgagatgactgagtagccaacttgc<br>tacgctgtgcctcttcttaaagcgtctgtgagccgggaatcacaattattgagaaaggatcataaattaaattaaatgac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	596	307	NA	intergenic
0	chr13	38350726	38350727	1001727	0	+	1104685159415	NA	NA	SINE	Alu	AluY	cttttactgcagcattgagaaggtgtttctatgcactggagctgatggctatgttcccaagtatagtccaatgaatgcagaatatggctgcttagccgac<br>tctccttcactcttatatagatttaaaattgtggtaagtgctttgacccaaaaaatgagctagatagatttttcaaagttcagcctccttgtcttatatt<br>taaaa<font color="green"><u>CCTCAGCCTCCCAAGTAGCTGGGACTCCAGGCATGTGCCACGATGCTCGGCTAATTTTTTAAAATTTTTTGTAGAGATGGGGTCTCACTATGTTG<br>CCCAGGCTGGTCTTGAAATCCTGGCTTCAAGTGATCCTTCTACCTTGGCCTCCCAAAGTGCTGGGACTATAGTGTGGCCACTGTGCCCAGCCTTGTTTTT<br></u></font><font color="red">CAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCCCCGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTTTCAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CCTCAGCCTCCCAAGTAGCTGGGACTCCAGGCATGTGCCACGATGCTCGGCTAATTTTTTAAAATTTTTTGTAGAGATGGG<br>GTCTCACTATGTTGCCCAGGCTGGTCTTGAAATCCTGGCTTCAAGTGATCCTTCTACCTTGGCCTCCCAAAGTGCTGGGACTATAGTGTGGCCACTGTGC<br>CCAGCCTTGTTTTT</u></font>gggaagattgcttaagtcaggaagttcaatctatgatcatgctactgcactctagcctgggtgacagagaaggtccccgtctctta<br>aaaaaaatagaaaaaccaacaaaatgatcatttttagtaaaccaaatggtgacattttatagtaatttgtacttgcacaaaacaaatagagaaacatgct<br>gtcctggcaaaagccgtgg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FREM2:NM:207361:22/24	
0	chr13	20792780	20792781	1001728	0	-	1104685715456	NA	NA	SINE	Alu	AluYb8	aggggctgagggggcagaggacactggggacagttccgtctgtgttccccaggccacaacttgagtggacaatggggaagtccactgtgcaaaactgtaa<br>aaggcactcggagtagctactaccgcccactgcccgtgggggcctctggctgggggctagaggcgggtagggagctcttcctcgctgtccccgcagtttc<br>cacagcaatcctttggcgactgaagagtctctgcagcagtcccttgcaggtggctggcccttccagtccaggtctgggggaactgagccatccagcccaa<br>agacattcagctcctggaagcactcagtctccaccatcccgttctgccaggggatgggcacgctgcctgtggcaaacttctggt<font color="green"><u>AGAAGTCTTGGTCGGT<br></u></font><font color="red">TGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCG<br>GGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCG<br>CCACTGCAGTCCGCAGTCTGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAGTCTTGGTCGGT</u></font>gcctccagct<br>ccacacccttgaccctagagaactgtttaatgtccagaatatccttgcagtaaatggcccgagggtcaggcttgaagggcggctccagcatgccggctcc<br>cacccgcttgaagttcagcttcttcaagagggggtgctccttcacttcgcgggcactgcccccacgacaccccaggcgttcagcggggtccttgcagagg<br>agctgtgagcaggcctgcggggaaaagcgctcggaatactcctcggggtcctccttcaccagccgctccacctcctcccgcttgatcttcttcttcctct<br>gctggaagggcgactggcctgcaatcatctcctacgggaggcagcctagcgcccaacagtcagagctgaaagtg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	21428362	21428363	1001729	0	+	1104685715659	NA	NA	SINE	Alu	AluYa5	tatcattatcagcattttgtcaaagccattcaataagtatctaggactttcctaacttttccacattttcctgtcttcttctgagccctccaaactgttc<br>caacctctgcctgctacccaattccaaagtcacttccacattttcgggtatcttttcaacagtgccccattctactggtaccaatttactgtattcgtct<br>gttttcatgctgctaataaagacatgcccaagactgggacatttacaaaagaaagaagtttaactggactcacagttttacatggctggggaggcctcac<br>aattacggtgacttgcaagaaggagcaagtcacatcttacgtggatggcagcaggcaaagagagcttgtgcatggaaatttccattt<font color="green"><u>AAAAAACCATCAG<br></u></font><font color="red">GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAACCATCAG</u></font>atcttgtgagacccattcactatcaccagaacagcatgagaaagacccacccatgattcaatcatctgccaccgggtccctctcac<br>aacacgtgaaaattatgggagctacaagataagatttggtggggacacagagccaaaccatatcacctatatatattcctcataacattcaccttatgag<br>tgtccatttttgtccattgatagcatcttttagcgttggggcacacttcacccttcagagacagtttggcttttttttttttttttttttttttttttta<br>agacaaggtcttgctctgttgcccaggctggagtgcagtggtgtgctcctggctcattgcagccttgacctctccaggttcaggtgatcctcccatctca<br>g	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	49071372	49071373	1001730	0	-	1104685511213	NA	NA	SINE	Alu	AluY	atgtcccacctccagccctaaggcggtttttccctatctcagtagatagaacgtacaatcgggttttataccgagacattccattgcccagggacgggca<br>ggagacagatgccttcctcttgtctcaactgcaagaggcatgccttcctcttatactaatcctcctcagcacagaccctttacgggtgtcgggctggggg<br>acggtcaggtctttcccttcccacgaggccatatttcagactatcacatggggagaaaccttggacaatacctggctttcctaggcagaggtccctgtgg<br>ccttccgcagtgtttgtgtccctggatacttgagattagggagtggtgatgactcttaacgagcatgctgccttcaagcatctgttt<font color="green"><u>AACAAAGCACATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACTCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCCCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AACAAAGCACATC</u></font>tgcaccgcccttaatccatttaaccctgagtttgacacagcacatgtttcagagagcacagggttgggagtaaggtcatagatt<br>aacagaatctcaaggcagaagaatttgtcttagtacagaacaaaatggagtctcctatgtctacttctttctacacagacacagtaacaatctgatctct<br>cttgcttttccccacaattaccaccctggcccctttcccctcacctcatctccctccattccaatcttggcttcatctggcactgcaaggggcttcaccc<br>acatgcttgtggatacttctcttccaaactctgtccacattccccacaaacagacaggccaccccatggctctaggtgtgtggagtctgctgttgaggag<br>aag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	68568765	68568766	1001731	0	-	1104685500867	TCTGGTGGATGCTAATAACTGG	CTTGAGAGAATTGCTGTTGGTG	SINE	Alu	AluYa5/8	taaggcaatgttataacggattctggcagaaagtcagtaattgctatgaggtgcttgattccttcctgctgattgtcactgaaaacaattgaaaatcatt<br>ttcttgcatatgttagtgctacaaactagctctttacttttgacaacactcagttccaaatcaatgactttttcaattattcttattccttcaattttta<br>attcttttctgcttgagagaattgctgttggtgtctcaattggtgctcagcattttcttaatgtaggtgagttatttggaagaatattttagagaaaatt<br>ctctttttgactatattatagcttcattgctgtgctaaatacgtgtacttgattaaaagaagaaaaatgcttgcacattctctctgt<font color="green"><u>AAAAGAATGAATG<br></u></font><font color="red">TGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGAC<br>TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAATGAATG</u></font>caaatactgactgtagtcacttaaaatatacaacacagtcacatcttaaaatg<br>tctgaaaagtacttcagtagataaatttgttcaacattgtttaataaatgatttcaccatttaacctatttttaaatttattgccagttattagcatcca<br>ccagaatttataggtggtttaaaacatttgggcaatggataacatttcttgaggaattctaagaggaatatcattgtgggttaacacttattgaagaaac<br>tgtatgtcaaaaactgtaacactatatcttatgaaattaaatcactgagtttatttcagtacccacatccatgttgttggacttactgtgggagaaaata<br>tgtgtgtgtgcacgcatgtgtgtgtatacaataa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	494	348	NA	intergenic
0	chr13	56487027	56487028	1001732	0	-	1104685360442	NA	NA	SINE	Alu	AluY	caaacctgtactttctgcacatgtatcttggaacttaaagtaaattttttaaaaaaagaaataattaataattacaattacaaaaatctggactatccaa<br>taggatatgtatttctgcattttacaattcagaaaattgaggttcaaggattaggtgatttttcataatttgaaatgaataaattaagataaaattaaga<br>caaagagccaagcttcctaaattctttttatttttactttttcctttattgcagtatgcagcattcatgtttaaaacagtgtttttactcatattattgt<br>ctctgtatgccctcctcttcattaagttttgaaggttgtgttagttattggtttctaggtaacaaattacataaacctaatagtc<font color="green"><u>TATACGTGATTTTTT<br></u></font><font color="red">AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>TATACGTGATTTTTT</u></font>tatctcacagtttttgtggattgaaagttcaggcttaactgagtgtgctctctggggtatcacaggttgcaaacaatttgtt<br>agctaagttgtagtctcatctgaacatagggaagaactcacttccaatttgacacagttttgttggcagaatttattgccttgtggttatagaactgatg<br>gtttcaacttcttgttgtcaatgggaggctacactcacttcctagagaccactctcatcttcttgccacacaagcctgccaacatgttcacaaacttctt<br>aggagccatctaagacagaggcaaataatatagtgtaaccataagagtgacatcccattacattatcctgccaatcctcatgaagaggggattacacaaa<br>gac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	45526996	45526997	1001733	0	-	1104685510248	NA	NA	SINE	Alu	AluYb8	aagatatttagtgagtaactcctatctacacacagtgggaggacagactgattttgcccttttgaagtttgaagggagatgggaaaagaggagcataaaa<br>taaacctgtaaccaggcatcagaaaactacagcctgaaggccaaatccaggtttttccattttttttttttttaatgattagaaaaaaacaaaaagaggc<br>caggtgctgtggctcatgcctgtaataccagcactttgggaggctgaggcaggaggatcacttgaggtcaggagttcgagaccagactggccaacatggt<br>gaaaccctgtctctactaaaaatacaaaaattagctgggcatggtggcaggcgcctgtaatgccagctacttggttggctaatgcat<font color="green"><u>AAGAATTACTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTACTTGA</u></font>cctgggaggtgggggtggcaatgagctgagattgtgcaactgcactctagcctgggtga<br>cagagtgagactccatctcaaaaaaggtcgaaactgtatttatcatgaacactaaaatatgtacacattttagttaacatgcattaaactgtaacaagtc<br>ttctggcaattgtagctttcatgagatgcttcccaaactgtattagatagatgctaaaattataaattaaaattttgggtcagactttgccataaacctg<br>gactcaatttagcacccccccaaaaaaagtcagattattcaattaatgcggttggaaaacctaacaagttacctagaaaaaaattaattggattattaac<br>atgtctttcaccaaagtaaattccaggt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CPB2:NM:001872:10/11	
0	chr13	45545749	45545750	1001734	0	-	1104685510256	NA	NA	SINE	Alu	AluY	tttggggtttctttgagcaggtttctggaaaagaacaaacagccaaaaatgccatatggattgactgtggaatccatgccagagaatggatctctcctgc<br>tttctgcttgtggttcataggccatgtaagtattcacattctcttaaccctatttctcaaaatggtgcccaagatcacctgtgtcagactcaactgggct<br>atttattaaaatgcattttcctaggtcacatcatgaagcttgggaatctacaattttcacaagtttcccaggtgacttttatgcattagtaagttgaaga<br>acatgacttcaagcatttaaatcacccaaaatatttttggtcttttctacatttctgcctggagctaaacagtggaaaatgatt<font color="green"><u>AAGAAATAGTACATTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGAAATAGTACATTG</u></font>ttataatatgtttactaagtagaggaaaggactgaaggagttatctaagttggggcccaattaatttatttctcttttggtttt<br>aattatccagacatcttttgccacctttgcccttggaaattgaacataaagcacaacattacagaggtgaaacagaatatgttttctcatatgtcataat<br>agggaattttcttcctgaagaagggttttgcatcaaaaaagccatatataagacaaactgtatgttggaaaagtaaaagatataacgactattaacctcc<br>ctgatgaatgaaaacagtaaaaattatgcttcaaatcctataaaatgggcatatatgttctctacactgatttctacaaagaatcatagccactggaaaa<br>	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CPB2:NM:001872:6/11	
0	chr13	57519068	57519069	1001735	0	-	1104685360176	NA	NA	SINE	Alu	AluYb9	tttatatttgctgtttcctgtgcataagcactttaagcaaatcattatttaatctttccaaaagctctattcaacaaatattctttatttgactactaga<br>caaggtactgtcctgggcactagggtgtgcaatgatggataaacaatcaaacaaaaaataataaataactcatatagtttatttgttacatcggaatgtg<br>attattcacattctccagagcaagaaacaacaggctgacagggattaagtgtgttccagggaattagtgactgaaaccatttgaatcaagatctatggtg<br>acttgaaagctcttgcaccttactacttcctcaccatgtaaatctagtgtaccatagaaattcaactaattttgattgattttat<font color="green"><u>AAAATGAATAATATT<br></u></font><font color="red">TCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAA<br>TTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGA<br>GATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATGAATAATATT</u></font>gtgttttt<br>aattttaaaacaaaaaatttatttttgtattatacagtcatttcagcctccttaaaggcagagactatgacttattaaatttggatcttcgagtcctgga<br>aaaaaagcctggtgcatagtaggagttcaataaatatttactgaatttttttttacctttgatgaaaccaaaagcttaaagaggtagagtgatttgcgca<br>aaattgtccaactagatgttgaccatcatattctatgaccttactatgtatatctttcattttcctaatctgctgttaacgcaatccctccttctttgtt<br>tcttgggttcctcagtcccctatttatgtccatgacccattaatttccacccctccacattcctaatactcagctct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	107517820	107517821	1001736	0	-	1104685247818	NA	NA	SINE	Alu	AluYb8	caatccacttgcctcggcctcccaaagtgctaggattataggcatgaaccactatgcccagcccagtattttgagtttcttccttgtctcgtaatgttat<br>ggcagagtcagattggaaagtaagtcacaatatataggattaaataaaacccatctgatgagaatttatggtttgtagggcatgactccccaggtcactc<br>agatagaaatctggacaagaaaaaaaaaatcagagattagtcctcagaggtatttgtgtgtatctcagtattgttatttaaagaaagtaatttagaatta<br>tgatagcacttcattatgtgtaatatgattcatattttcacatttcttattatcatcatttgaataaaaaattcaaatgtgatttatttt<font color="green"><u>AATAATTTTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTTCGGCCTGGGTGACAGGGCGAGACTCCATCTCAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AATAATTTTT</u></font>atttgcttttcattagctaaggaaataacaaatatttgctatttgtttattggggcacatgaagtgaattatgaaactgatt<br>gcattctcttataattgacttccactcctctgacaccagtcttatctcccgtttactacaacactgaatttcctacacaatttatatatctatttttttt<br>ctttcctttacatatgacatgtactattaccctgctctctaggaagagccttattttcaaccaccatagaatacatgtaagaattatttccaaagacaat<br>atttgtgatattctcttattttcacattcattcacatgagaaagaaggaataactcttctagatatctttatctacccactctttcattgagtttatgag<br>ctaattag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	110409989	110409990	1001737	0	-	1104685246968	NA	NA	SINE	Alu	AluY	tcgctgctccacagccctggggacaaagccgcgacacaaaggaaaataatctttttctgttctggccagagcaaaatacatgacaaaacatggacattag<br>ccactatgcttagcactcaatatcaaactggcaaagctcaagcttgcccccggttgggccccatcac<font color="green"><u>AAAAGTGATGGGGCCCTGAAACCCCGTCTCTAC<br>TAAAAATACAAAAAAAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA<br>GGCGGAGCTTGCAGTGAGCCGAGATCACACCACTGCACTCCAGTCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAACAAAAAACAAAAAACAAAAAA<br></u></font><font color="red">TTTTTT</font><font color="green"><u>AAAAGTGATGGGGCCCTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTA<br>CTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCACACCACTGCACTCCAGTCTGGGCGACAGAGTGAG<br>ACTCCGTCTCAAAAAAAACAAAAAACAAAAAACAAAAAA</u></font>gacccatcacttttaatccaacccccaaccgggagtttcaacttgtggtctctgggcaaga<br>tggtcgccctgagtaatagaaaagataagaaaggaaaaggaaagagagagaaagcagtgcctgtggcagggtggggaaggtgaagagctcaaggaggcca<br>gagaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	77482672	77482673	1001738	0	-	1104685165777	NA	NA	SINE	Alu	AluYa5	ttctgtcctccttaactgcactgatctgtccagtacacacaatctctataatctcttttattgtcctaagcaatttagctttgactctcagctttgttct<br>attgtcctgagcaattcagctttgactttcagcttgcaaacctcaagtgaaaaaaataaagaaaatcagaagtaagatgtttctttccaccttaaaaagc<br>ataccatccattgtttcttaagagtgttgagggtttctgtctcagacctcatcaaagtcttcattcaaaacattttttttctttatagtatttagggaat<br>agggaaaagagggaggttccattgttaatttttaaaaaattctttttataatttttgcatatgtaatttatccgacctctgaattagctttt<font color="green"><u>AAGATTTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGATTTG</u></font>tccactgagtgtaagttccttaaggaataatggtaatcatataagtcactactcatgatgttctagacactgaactaattcatt<br>tatgtaagacaaaggtcagcgaactacagaccacaggccatatgtgattcattgcctgtttgtgtatggcccacaagccaagatgacttttacattttta<br>aatacataatactttaaactaaaaagtgtttaaaaacaaatgaaagtttagaaagcatattctgaaaaggatcagctattataatgatatgaagatatgt<br>gccatacactgtaattttctatttttataaattttaaaacaagttatatcttgatgtgagcttgataaggatctctcctcctctctactgcttttttttc<br>ccaaatag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	78169602	78169603	1001739	0	+	1104685165991	NA	NA	SINE	Alu	AluYa5	tatttattatgacgagtctttcaattcataaacacagtctgtctgtctctttatatatttaatctccttggatttacattagcattttgtaattttcagc<br>atacagattgtgtatatgttttgctaaatttatacccaagtattttaatttcattggcatgattgtgtgaagggaaattttaaatgcagttagccttttc<br>ctatcccaccattgtattttatgtgtgttgggtggagggggtatacaacttgtattttagtttgtaggatgtcagattgagaggagacacatctagatgt<br>gatgaagaggactgggcatcttctagaattccagggcattgagacacatttaataactggaggaagttttggattgtctgtctt<font color="green"><u>AGAAATGGGCATATTC<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AGAAATGGGCATATTC</u></font>tacatatgtgatgacaggtgcacatggatctttcggtgtcgtgtccaaagagatgaagtataccagaaattatctcataa<br>tagtctgtgggtttttttttggcatagtaatacaatttttagtttacaaaatcacctaattagtgacttcattttccagcttctcttatattttggtgtg<br>gccatgtgatttagctctggtcaatgggataaaagtgaatgtgatatatggaattttggaactgtacccacaaagggaaggagtgtactcatcatattcc<br>ctcttccttttttccttctgcctgaaacatgaatgcagggttgagcactgtttgaggagaatgacgacaacactccaggatactgaaacaataagatgga<br>agga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	90959677	90959678	1001740	0	-	1104685252604	NA	NA	SINE	Alu	AluYb8	atccaggtaaactagatacctggtccaatgcccaatataaagcatatacaaagattataataaaatagatcatgactaatttttagtattcccatgtgac<br>taaaatggctttgaataaaaatgttactttagaaagagttaagaaatatgattagtaatagtttaatataaaactcttttgagcatttagtgttatatta<br>atattgtcctaatgtaacatgaaaaacaaggtctcaaaatgaaatattgctttcccagaattctaaaattaggttattaatcacatcaacttttcatgaa<br>tatctattatagcataactttttaaacagtaaaacttttcataagaatgcctatgcaaatatgactatctcactatttgatcct<font color="green"><u>AACATATTCATATTTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AACATATTCATATTTT</u></font>aagccttctttatgagcacttttaaagacctaattgaagtaacttcatagaatattttgagatagtctcacagtga<br>acccaagtttgtttgcaaaagtttttttttgtttgcaacagttatgtagtagtttgacctggtatgagctctgaggattgcatcctttatattttcaatt<br>taataataaaatattcaagaagtgctcactactatacctgcaattttggggcattagaataataaatttaagacttatagggaatattagtggtagcctt<br>atgctactcctgcttcttacaggaaagattccagtatcaactgtgaactggtattccagtctttgtctcaaccttcaaggctcaaaaagcctttataaca<br>ttttacca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GPC5:NM:004466:2/8	
0	chr13	80271733	80271734	1001741	0	+	1104685166556	NA	NA	SINE	Alu	AluYb8	aaaaaccttgtagaaaaattatgttttgccttgttaagaaaaagctgacccaaatgtcagaacacagagacacagacttaagataaaaaatgactcaact<br>ttttctctgccctttgattaaatctataacgccatcaacattaccccaaatggatattttgagagttgattttgtgtaagaaatcgtggatgcaagacgg<br>aaacaactgccaaacagtaaggcaaaaaaatatgagtagagacaaaaaaacaaaacaaaacaaaacaaaacaaaacagaactgacaccatcttctgctcc<br>aagtaagattacaaatttcaaaaacctgaaaaaaaatgtgatgttaaaaaagcgaaggcaatcaattggatgacattaaaaatatagaatgaact<font color="green"><u>NNNNN<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAGAATGAACTGAGAAA</font><font color="green"><u>NNNNN</u></font>gtttaaaatacgtatgtgtagagggtgtatacttctggccatgatatagtaatgggtgctgtgtt<br>tgcattttcttttaaaagaataagagaaaaaaatatgatacactgatttttcagacttaggataacaagccaaaaaacgaataattgttgaagggaaata<br>attgggataggtaccccaacattttgctgaggatggttttcaggatgcaatacaggcagggaaaatcaagcaggcctgtctgttccttggaggtaaagat<br>cagaatttggagagatcaaactgatagaattttgggggcagcatagttggggcggtggggggaaacgagctacatcaacaaggcttcaaagatctccaga<br>aagtacctcttgaatttttggctacatagt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	91311982	91311983	1001742	0	+	1104685252518	NA	NA	SINE	Alu	AluYa5 	tactgtcatttatctatttctcccttcagttctgcttactttccttcatgaattatgaggctttattattaaatcagtgccccctttggcatattattgt<br>cctctcatgaattggttatttcataattatgagatgcccccattttctctgataatgcatccccttttccagtttacattgtattttgctgatacagcca<br>cacaagcttcctaatacttgttgtgtatatggtttatctttttgtataggtttacttttcacctatctgtgtctttatattgaatatatgtttctggtag<br>acaacattagttgggtcttcttttcttgtctaatatgacaatctctaccttacaattggataatttagttcataaatatgttaaat<font color="green"><u>TAGCAACATGTTTT<br></u></font><font color="red">TCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAA<br>AAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAG<br>CCGAGATCCCGCCACTGCACTCCAGCCTGGACGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TAGCAACATGTTTT</u></font>tttttaaaac<br>tgtacaatctgtttcttgtttctcttctcttatttttgtttaattgtgttttaagtactcattttaaattgcatagatgagttagttgcagagctttttt<br>actgagttatttgtcttacagtaattatcaatttatagttaactaatctaaattttacttggaggtttttttttacaacttcatatacaatgtaaaaaac<br>tgatgacagtaacatttcctttattccctctatgtcctttgtgattgttttagtataaatttttctatgtacatcataaaccccacaataaaatgatatc<br>tttttaaattttaatagtttcccttcaacgaaattgaacgataaaaaaagtattttctgttactcatatacttatc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GPC5:NM:004466:5/8	
0	chr13	97532912	97532913	1001743	0	-	1104685250840	NA	NA	SINE	Alu	AluYa5	ttaactacagctaaatataataattcattttcatgaaatttttattttttagtgatttgtcttagttgttcaggctgctaaacagaatgtcatagaatgg<br>gtgacttataaacagcagaaatttatttctcacagttctgggggctgggaaatccaagatcaaggcgttcacagacaccttctagctgtgtcctcatatg<br>gtagaagggacaagggagctctctgggccctcttctataagggcacgagtcccattcatgaggctttgccgtcatgacccaatcagtccccaaagtcccc<br>atctcctaatactgccaccctgggaggaatccgggacgtgaatttgggagggacacaaatgttcaatctatattaggatt<font color="green"><u>GACAGTTTGCCATTAACCTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>GACAGTTTGCCATTAACCTT</u></font>taggagttttaggtaaaaagtgagggacaagaaaagagaaatattctgtgcattagactcacggatgtgatatgtgactg<br>ctcctgtcttattcttcacaccatgtgactttttaaaatctacgaaaagcctattattttttaaaaaaggatacataataccaaaaggtgttcaattata<br>aatattttgttcttacttaagtcacccacccgctaagaccaccctccctcaaggtagccactgatacttacatccttccagaaatgttctatgcatgtga<br>gtgtgtgtgtgtttgtgtgtgtgtgcatgcatgtgtgtttgtgtgtgtttgtgtgtgtttgtgtgtgtgcgtgtttgtgtgtgcgtgtgtgtgtgtgttt<br>	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	46905844	46905845	1001744	0	-	1104685119960	NA	NA	SINE	Alu	AluYb8	agaaaattccaaaaacttatcataccctgaaacaagatggatgattgctcttgcaaagacaaagaatacaacttcctgtgaaattactcataagagttaa<br>tggattacttaatcccagtatattttaactgtttatcataaaataaagaataattaagatagctcagttatatttgcattactctgccaatgttaacagt<br>ggttggctaatgaactcagattttattcactactgtcagtcttttacttgatgacagatgattagtctatggaacacattattagttctaacaatgtaga<br>ttaaggtttctgctcattactttttattttcacatacaaattctatttttttgttgtatgcaaaactagtaggccaaagtcaaactaaaagtaa<font color="green"><u>TTTCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAGGTTTT</font><font color="green"><u>TTTCAT</u></font>atatctaacttttagtaaaacatagtatcaaacataatctttaaggtatttaaatctgcttggagataag<br>tactgttacgtgacttgaagttcatgtaatattttaagtgcttctaaagaaataataaattcacttgaaaaaggcaaataataataacaataataaaaac<br>tgtactcaatctgtactgatttataataaagagccagaagacaaaatttagtattatatactttaaaaatatagtacatattttttgtaacagacgaata<br>tgttatattgtcccttttattgagtgattagtagagcacttactgaactataacctcctggtaaaagtagccaggtgaagggcgaagaaaataatcaggt<br>aggcatcctcatttggcttttatt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MDGA2:NM:001113498:1/17	
0	chr14	50501846	50501847	1001745	0	-	1104685121083	NA	NA	SINE	Alu	AluYb8	gagggtggagagcccagcctgctgaggttatatgaaaatgctacaccattttatatcagggacttgagtatctgtgaatttcagtatctcagggaggtcc<br>tggaaccaatgcccccgcagacactgagggaccactgcagggaggccctgccaggcaggtgtgccagataggaatctttggctacaaaaacacccaacct<br>gactgtggctgacctaaaggcatagaaggaatatgcgagaaagacatggggcagctcagaaagatgggaacgagggcagctctggggatcaaggtagcag<br>gaactgatgaatatcgggtcttatcagagactgccaagggggcgcaaaagctccagctcatcctcattttattgtctcactgctc<font color="green"><u>AAGATTTAATTCCAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGATTTAATTCCAG</u></font>aagatggtgtctggttttgcttgtatcctgggtctacctcttagctgagggagggcaggacatcaccacttagaatt<br>ccagccactgaatccaatttgagtgctatttctagaaaagtagggatggaggcttggcagcaaaatgagcaaggacccctgcaccatgatgaagtatttg<br>ggcttattccaagtgtagcaggaagccactggtgggttttaagcaaagtgaagtgacaggttatatctacgtaatgttttaaataaatgaatgctgttta<br>gtctgggcctttaatttctgggatttttttttttttttctgaacaaaagtaaatgctttggaaatggcagaaagctgggagacatttacaatcgtagcag<br>agaataaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	50788750	50788751	1001746	0	+	1104685121138	NA	NA	SINE	Alu	AluYa5	tgtcttagagaaagtggttaccaatgggaaaatctataggccccggggcctgaaataacttgtcttttggtgttgaccatacaaactttttaaaagaata<br>ctgactctgatagaatcctttctgtgcaatatcgtggaatacgtaactggtgtacacaaagaggtaagtgttctcaaacaagatgggtaagtcagtgaat<br>aggcacaattttagaaactttaaaagagttgaacctaaggaaatgacagagataatactctacctcttttaggaagttacaagggaattcatttcttgga<br>aatgaaatttttaaaatgacttggctaattaatgtcaagctacttaagtttttctgtcctctattatgatccacagtaaaagtcac<font color="green"><u>AAAGAAATCTTTCC<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AGAAATCTTTCC</u></font>ctttaaatatctgttaatttggagggattgaaaggtataaagtaaagggttttttgaatgcctttccaaatcattcaaaaagaaggca<br>agcatggtctatgagccagagagatctgattgggcatcccaactctaccacttagtagcaaagcagtatgacagacattttttaccctctgagcgtgtaa<br>cctcctttgtgaaatgaaagtaattaaatttgcccctttggatcattatgacacttaggagataggtatgtaatgctcacattatcctagtaacatataa<br>gcagtaagcactatgtatatgattgtgtaatttatttttctttagtaatacaactgatattaatccagactttaaagtgatattgccatgccccttcc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TMX1:NM:030755:7/8	
0	chr14	19554152	19554153	1001747	0	-	1104685631081	NA	NA	SINE	Alu	AluYb8	ttagatcaaattttcctcagagatattatctgagaatatcagaaaagccattctacaacccacatataacacaataaatgagacttttataaaattacta<br>agcaacatacataagttgggtacatgatttgggagctcatctgtatttatacatcaccccccgcccatagtcgttatatccaaaacatgcgttttagctt<br>aaagtaatttttctcctttaaattttgtcattgaggaacaaaatttccttctcttggattcaggagaaagccacgttaatcatatttatatacatagata<br>catctacctatcaacatgcctttgctaggtttagttttgtgtttgtgtgtgtaaatggagagagaggaagaggaagagacact<font color="green"><u>TAATAATGTACATTCAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGGG<br>AACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAATAATAATAATAATAATAATAATAATAATAATAATAAT</font><font color="green"><u>TAATAATGTACATTCAG</u></font>ttcccatgtcttacgtgttgacatt<br>atttttaagtgaagctttaatttcaatatttagtgcttaagaataattaattacccattgggcaatgatatcgacagagatggtgagaagatagaatccc<br>tgaaaaaatcttcatattctcaatcctcctaaggaattttggttcacctactgcacttgattgatccatgtttttatatggacaaaggccatggaaagaa<br>ggaaaaaaaaagttcctacaactctcacctatgcagaagtcttccagaatgtctaactgcccctcaggaatcactgaagtttgaaaaaggcaaatataca<br>tgcttgttagtatataacagtctatattttagagtatcacttgcaagttaaaaattat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	promoter:OR4K14:NM:001004712	
0	chr14	31738998	31738999	1001748	0	+	1104685634630	NA	NA	SINE	Alu	AluYb9	tatgtctagatatatattttatagatatatctatatttatatctagatatatgtaaaatatatatttatatatctagatatatatctagctataaatatc<br>tagatatatatctagctataaatatatataatatgtatctagatataaatatataatctagatatatatatctagatatatatatctagattatatataa<br>atatataaatatatctgtataaaatataatatatatttgtatttatttctatctatctatctatctatatagatagatatagatatagctatatatagag<br>agagatagggaggctggggtctcactaagtttcccaggtggttttgaacacttggtctcaaggggtcttcccaccttggcctca<font color="green"><u>AAAACTCTGGGACCTC<br></u></font><font color="red">CCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAG<br>CTACTGGGGAGGCTGAGGCAGGAGAATGGCTTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCG<br>ACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTCTGGGACCTC</u></font>accaggcctacgaccatttataaagatttttctcccctaatggatttat<br>ctcctgccaaccttcaaacatttctttttcttgtatgtgctaagtcttttcccacttttcagaatggaaagagtttataagtcgtcatctgggaatgcag<br>cctaactctgaaggcgcatatagcttgtagggacatcaagttcatgaccctgtaactctgatcgtccttctaactatagattcttctaaccatgtatcct<br>ttaataaactgattagttgtaaggtttttaagagagaacatgaaagaattttgatatacttctacaatcataaaattgaacatcaatttactgcttccta<br>gctttgaagtcacaaagcagaaatagcttattgga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	38230520	38230521	1001749	0	+	1104685636400	NA	NA	SINE	Alu	AluYa5	gaataagtgtttagtaaggtcccaagattcaagatcagtcagtaaaaatcaattgtatttctatattctaacaacaaaagccttagaatttaaaatttta<br>aaaagcaataccatctgtaataacatcaaaactatgaaatatttagaaataaatttaacaaaatatgtgcaagatctctacactgaaaatacagatgaga<br>gaaataaagacctaaataaatggagagagatagaatattcttctaatactttacattgttcagatgttattgttccccaaattgaccaatagattcaaaa<br>cagcaccaatcaaaattgaaatatacttttttggcagaaattgacaagctataaaagtgaatagccagaaagaaatgatttt<font color="green"><u>AAAAAAGATGAACTTAGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AAAGATGAACTTAGG</u></font>agaccaacactacctgattacaacagctgcaataaagctatagtaatcaaggcagtgtggtactggcatgaggaaaaacacatag<br>gtcaaagaaacaaaatagagagctcagaaataggtttacatatatatacctaattagttttaaaagaaaaaggtgccaaggtaatacaacggaacaagaa<br>agtcttttcagcaaatagctacataaaaagaaaaatcaatctcaaccgttaccccataccatctataaaaattaactcaaaatgaattatacacctggat<br>ctaaaagtaaaaacctgcaaaatttacagaagaaaccctcaaacatcttcataaaggtagataaagattttttcaatgatgaaatggataaatcatt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	91194822	91194823	1001750	0	+	1104685285770	NA	NA	SINE	Alu	AluYa5	aaatattttaaaaatggaactcacagacatagagagtagaataatggttaccagaggctgggaagggtagtggggcattatgtagggggagaatggcgat<br>ggttaatgggtacaaaaatatcattacatagaatgaataagatctagtatttgacagcacaacagagtgactacagtcaataataatttattatatattt<br>taaaataactggaagaatataatttgaatatttgtaacataaaggataaattcttgatgtgatggataccccatttaccccgatatgattattacacagt<br>gtatgcctgtatcaaaatatctcatgtatcccataaatttatacacttactatgtacccacaaaaattaagaataaaatattttt<font color="green"><u>TCCCTTCCTTTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>TCCCTTCCTTTTTTT</u></font>gagaaggaagaaactaacagcttgtaaaagataaaaagaatcaagttgagacaaagcacaccccaagataggaggtaaatttac<br>ttccatattctgcctcaaaaaatcttaataaattaaattcaacaaaacaagatctcaaagactcaataatagaaagacaaaataaaatgaaagtgcaggt<br>cgcaaacatacagaaataaattgagaatcatgtccctttatcactctagggtcctaggctggttagcaaaattcaactgagttggaaaggagtgggcaac<br>tatcattaaggtcaatcaatattaactgttttgagatttgctaaagggttcaaaattacagccagataggaagaataaattttagtgttctataccactg<br>g	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CATSPERB:NM:024764:15/27	
0	chr14	62291445	62291446	1001751	0	+	1104685124156	NA	NA	SINE	Alu	AluYa5	gaaaataaaaaaaatagagccaggaatgctggctcatgcctataatcctagcactttgggaggctgaggtgggcagatcacttatggtcaggagttcacg<br>accagcccagtcaacatgcaaaatcccatctctactaaaaatacaaaaaaaaatagtcaagcatgggggtgtgtggctttagtaccagctgcttgggagg<br>ccaaggtgggaaaattgcttgaacccaggagacagaggttgcagtgagctgaaattgctccactgcgctccagcctgggtgacaaagcaagtctctgtct<br>aaaaataaaataaagtaaaataaaataaaataaaataaaatagaaatagctatacttacacaaaatagacttcaagacaaaaactata<font color="green"><u>AAAGAGACAAAG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAGAGACAAAG</u></font>aaggtttataagtgcctacatcaaaaaagaaggcaagcttcccataaacaacctaatgatgcatactgaagaactagaaaagcaagag<br>aaaacaaaaccaaaatttagtggatgaaaagaataataaacatcacagcagaaataaataaaattgaaacaaaacaattcaacaaatcaatgaaataaaa<br>agttggctatttatgatgataaacaaaattgacaaatataaaaaagagagaacacccaaataaataaaatcagagatgaaaaaggataaagtataaccaa<br>tacagcagaaattcaaagaatcattagaggctactgagaacaactacatatcaatagattggaaaacctagaagaaatagataaatgtctagacacatac<br>	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:KCNH5:NM:139318:10/11	
0	chr14	62296052	62296053	1001752	0	-	1104685124158	NA	NA	SINE	Alu	AluY	gagtggggatgcaggtggggagaaaagaaaagtgcctgacatgggcctatccccgccgttcaggtgaagctggcttcttcaaagtgtttgtaaaaaaagt<br>cacaaaatggatgtttgctctggtgaaaaaactatgaaagtagatttggatttggtaattttgcaaagctgaaaaatctctgttgttgggttcctgagtc<br>attctactcagcttgctcccttaaagggctcttttaaattttgaaccagcaattttatggaggttggtaacagtggtgatgatcagataatattgaaaga<br>gagagagaaagaaaggactgtaaaaattcaaaaattcaatcaggacaagtttgtcagcagaaaagacttaaacaaatgtaattatt<font color="green"><u>AAAAAATATACCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCAAGACCATCCTGGCTAATATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCAGGAAGCGGAGCTTGCAGTGAGCGGAGATCGCGCCACTGCCCTCCAGGCTGGGTGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAAATATACCCT</u></font>cgcctggagggtaaaccagctttatgatatcaaatggaatataaaggatttgaattttcagcttttgagcaaatgttataa<br>aacaaatgtgccaatatccttctgtaagcacaggcacctcagtattttccataatcaaatagccatgccccagaaataaattcataattgatgccacagg<br>atttcaaattatctaagcattctctcattttcttaaaggctcttcagaaaaaatatgcctaatttagaaaactgctactttagtctggatttcagacagt<br>gggactattcaatcctcaggtgtgcttcagcttgtcaaaaacacagctgactaattttgatgaaagaagaccagagatagatttaatatcttaccaaaat<br>aagtc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:KCNH5:NM:139318:10/11	
0	chr14	74569335	74569336	1001753	0	-	1104685290308	NA	NA	SINE	Alu	AluYa5	aattgaaagaatgtggtagttcactaattgaaagatgtgaacttatttatgtggtcagaggcatatttgccagatgttattaacaacccagaagtacgca<br>aggataggctgcttactctgacatccagcacaaagttctgcccctccatatgcccggtgatcttggcatgccttcccacactccatcaggcagagaccag<br>tggcagctcagaaggcccagtatgctgttttgattttaaaatttagtttgctttggaatatgcagtataatcaaatagatccaattttgaaaggcacaaa<br>agggaatataataaagtctcctttctatccttgtccccacccctcctagtttctctccccagagacaaccaatatctctggtttt<font color="green"><u>TGGAAAGATAGATTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>TGGAAAGATAGATTT</u></font>aagcaatatatgctttttaaatgtttttttttgctacccttttcctcatcatgaggcagtgtgttcaccaagtg<br>gtaaaataccaggaaagtctttactcctgtggccaatgagtaatgtcaaagagttaggcaaggacctaaggagtgcttcatggactagaatggcaatgat<br>attactactgttttcacttttccttataaaatgacggcctaagagttgggaaagatatagtaaaaacagtgttagaaaaacttacctctacaggccctgc<br>accatttgagaatagtactaattctctccagagactgggagaccctgctcaaggaaagggaagccttctggagccataagactgtgtggtcaacccacat<br>atgttcctggt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MLH3:NM:001040108:7/13	
0	chr14	59602157	59602158	1001754	0	+	1104685123387	NA	NA	SINE	Alu	AluY	agacaaattgagcaagactccatctcaaaaaaaaatttttttttcatctaaatttctgagtagctggaattacaccaccacgccaggt<font color="green"><u>GTGGTTCACGCC<br>TGTAATCCCAGAACTTTAGGCGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACAAGGCAAAGCCCCATCCCTACTAAA<br>AATACAAAAATTAACTGGGAATGGTGGCGTACACCTGTAATCTCAGCTACTCAGGAGGCTAAGGCAGGAGAATCGCTTGAACCAGGGAGGCAGAGGTTGC<br>AGTGAGCTGAGATGGCACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCCTCTCAAAAAAAAAAAAAAAAAAACTGTAAAAGAGAGTAAACTATT<br></u></font><font color="red">TGCCGGGCGCG</font><font color="green"><u>GTGGTTCACGCCTGTAATCCCAGAACTTTAGGCGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACAA<br>GGCAAAGCCCCATCCCTACTAAAAATACAAAAATTAACTGGGAATGGTGGCGTACACCTGTAATCTCAGCTACTCAGGAGGCTAAGGCAGGAGAATCGCT<br>TGAACCAGGGAGGCAGAGGTTGCAGTGAGCTGAGATGGCACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCCTCTCAAAAAAAAAAAAAAAAAA<br>ACTGTAAAAGAGAGTAAACTATT</u></font>ttattcatcaaggtatttcacttagataaaatgtataatttatccagtaaagttattatgtctttgctcccagcaaa<br>tgtcttgattt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	42610817	42610818	1001755	0	-	1104685389491	NA	NA	SINE	Alu	AluYa5	tcggccttccaaagtgctaggattacaggtgtgagccacgcgcccggcccctttatagcttctttttaagaggaagtaccttaagcatcagactcaaaat<br>cttataaagatggactaggttaaggctgaagagcagattgttttaattggaaataggggcaggtcaaaactcctatttataaaagtgcaaaattatggag<br>tcattgcatgttttttctaatgatttcttgggaaaaagagtacatgtaaaaacaaattttggcagagcacagtggctcatgcctgtaatcccagaacttt<br>gggaggccaaggcaggcgggtggatcacttgaggtcaggagtttgagcccagcctggccaacatggtgaaaccctgtctctactaaaaata<font color="green"><u>CCAATTTTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>CCAATT<br>TTT</u></font>ctgagcatcatggtgcacacctgtagtcccagctactagggaggctgaggcgggagaatcgctggaacccgggaggcagaggttgcagggagctgag<br>atcccaccactgcactccagcctggacaacagagcaagattacatctcaataattaaataaataaagtttttgatttatatgatttgattaagttaaatg<br>aaattttttattttaaaccaaaacgaaaaaccaaaaccctacccccatgagtcttaagacacgaaactgtctccattcaacttccatatatttttccata<br>cttacagggtaccataaaatcctacagtaccttcctattcctgtctggccagcggaaaaaacatgccttcctcagggagtgcctaaaatccaca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	36505297	36505298	1001756	0	+	1104685378789	NA	NA	SINE	Alu	AluYb8	ggcagggagagggagagagaaagaggtaggagaaagcgagggaaaaggagagcaaaggagggagagaggagagagaggagaaagagaaagtgaagatgct<br>acactgctggctctgaagatgtaagaaggggccatgagccaaggaatgcaggcagcctatagaagctaaaaagacaaggaaatagattctcccctcaaag<br>cctccagaaggcagtagccccaataaccccttaactttagcctagtgagacttatttcagacttctgacctccagaactgtaaaataataaatctgaggg<br>ttttttaaaaatagcatttaggctgtagttcccaaatctggctggtcatcagaatcacctgagtagatctatcttaaaggctatac<font color="green"><u>CATTTTTTTTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGGGACAGAGGGAGACTCCTTTTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CATTTTTTTTTTTT</u></font>agtcatgttatttgcagcaacatggatggaactatagggaataagatacagaaagacaaatgtcatg<br>tgttctcacttatatgtgggagctaaagaagttgatctcatgaaggtagagaatagaatgactgatatcagaggctaggaagggtacataaagtgggtta<br>ggggagatgaagagagattggtcaatgggcacaaacatacagttagatagaagatatatgtccaggtgcggtggctcacgcctgtaatcccagcactttg<br>ggaggcccaggtgggtggatcgcgaagtcaggagtttgagaccagcctgaccaatgtggtgaaaccccgtctctactacaaatacaaaaattagccggat<br>gcggtggcacgtgcctgta	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	43357216	43357476	1001757	0	-	1104685389322	NA	NA	SINE	Alu	AluYa5	ccttacagcagtgtcactgtctttacctataaggtgggtctcactatctttattttatagatgaggatgccaaggcacagagaagttaaggaacttgtcc<br>aaaatcaccttagtgataactggcagagcttgaatcagaattcaagtaatctggcgtcatgtccaataccactaaccattgcattctgctgcctctcaga<br>aataaaccaggcatagagtaaaattcatctgtagttcaagaaacaatttattgaagcttcctttttctgtcaagtttggaaaacgggagagaagatagga<br>atcgagactgagaagacgaccaagtggttctgagctgagagaactgggaaattgaaggacgtagattagctaagggaagatacaagtacctgaat<font color="green"><u>NNNNN<br></u></font><font color="red">TAAAAATTTTTTTTATTGAGGTGAAATTCACATAACATAAACAGCCATTTTAAAGTGAACAATTCAGTGACATAATATTCACAATGTTGCACAACCACCA<br>CCTCTATCTAGTTCCAAAACATTCCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGA<br>GATCGAGACCATCCCGGCTAAAACGGCGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTT<br>GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACT<br>CCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>attcccatcaccccaaaggaaaaccccaaactcgttaaggagtcactctctaatccctccttccccag<br>gccctggcaaccaccatctcccttctgtctctatggatttatatattctgaatatttcatctaaatggaatcatgcaataataagacttttgtgtctagc<br>ttctttcgtttagcatgttttcggggtgcctctacatagcataaatcagtacttctttttttaatgggtgaataaaattccattgtgtgtatgtaacaca<br>atttatccattgatggacatttagactgtttccaatttttggctattttgaatagtgctactgtgaacatgcatgtacatgtacttgtttgagaacttag<br>ttttgattcttttgaatgtgtatgtag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	43913299	43913300	1001758	0	+	1104685389189	NA	NA	SINE	Alu	AluYa8	ttgaatggctatatgaactcaagggaacaagggataaactattaagactagagagaactctgcccctagaattaattctttgggtttttgattgaatcaa<br>tttaccagaaggaagcatcacatgtaaacagatcaggagaaggttgctcagtaaaccgagcaaggaaaattggacattattaagctgtgtttctcaatga<br>ggcatttggagaatcgctttgtgaacaatagatgttagtctacatcaaactacagcaaaccatgttatatgttctgaatctatcttcctgccagttttgt<br>atgtcccctgggctaagaatggtgtttagatttttaaatcattgaaaaaaaatcaaaagaagaataatatttcatgagatgt<font color="green"><u>GGATTTTGCATAATTTTC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAG</font><font color="green"><u>GGATTTTGCATAATTTTC</u></font>aatttcaatgtccataaaaaggttttattagaacatagccacactctttcatttccgtattgtctgtggct<br>gttttgtgttataatggtagaactgagtagttaaaaaagaaacctaataaaccgcaaaggttaaaatgtttaccctctggccctttatagaactggttag<br>ccaacacttggtctgtatgatagtgttgcacaaggaaaaagttaagaatctctgctctcggctgggcacaggcctgtaatcccagcactttgggaagccg<br>aggtgggtggatcacctgaggtcaggagaccagcctggccaacatgggaaaaccccatctctactaaaaatacgaaaatgagccaggcgtgatggtgcat<br>gcctgtaatcc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	38502201	38502202	1001759	0	-	1104685378311	NA	NA	SINE	Alu	AluYa5	ggctgcagtaagctgagatcacgccactgcactgggtgacagaatgagatcctgtctcaaaaataaataaataaacaaacaaataaaaatcctggcctag<br>ctgggcgtggtggctcatgcctgtaatcccagcactttgggaggctgaggccggtg<font color="green"><u>GCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCG<br>GCCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGACGGAGTCTCACTTTGTCATCTAGGCTGGAGTGCAGTGGCGCGATCCCAGCTCACTGCA<br>ACCTCCACATCTAGGGTTCAAGCGATTCTCGTGCCTTAGCCTCCCAAATAGCTGGGATTACAGGCATGTGCCACCATGCCTGGCTAATTTTTGTATTTTT<br></u></font><font color="red">AAAAATACAAAAATTAGCCAGGCATGGTGGCACATGCCTGTAATCCCAGCTATTTGGGAGG</font><font color="green"><u>GCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGC<br>GCCCGGCCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGACGGAGTCTCACTTTGTCATCTAGGCTGGAGTGCAGTGGCGCGATCCCAGCTCA<br>CTGCAACCTCCACATCTAGGGTTCAAGCGATTCTCGTGCCTTAGCCTCCCAAATAGCTGGGATTACAGGCATGTGCCACCATGCCTGGCTAATTTTTGTA<br>TTTTT</u></font>taaaaatacaaaaaattagccgggcatggtggcgggcgcttgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggagg<br>cggagcttgcagtgagccaagattgcgccactgcactccagcttgggcgacagagcgagac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	38887625	38887626	1001760	0	-	1104685378124	NA	NA	SINE	Alu	AluYg6	gagctcagatttgaacgctgactccaaaatccaggttggtgaatgctgcacggtcctgccttcctgcgtgacactaatttactccatctagttcccatca<br>tctcctggtcagaatccctggccacaactgaggcagagggaacctgcagtttaccagaggaatctggcaggtctgtgatagggacaggacagtcagcctt<br>caccatggtgccccggaagcaggaggaagtgtggtaatctaactccagcgacctggagaagggcaggctgcgggatggggaagatttcagagcagaggga<br>gtaacgggcttggtgtgatggacaccgcgcttcggaggagcagggtggagagaagaaaaccgccagatgctacactgggccgacag<font color="green"><u>CAAAGCTACTCTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCATG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AATT</font><font color="green"><u>CAAAGCTACTCTTT</u></font>caaaaacgacggcagcgcgctttacagtttatagggaactctcacctaaagcacttcagtggaccctcacataaaccctgaa<br>agcgagagaatgttagccccattttacagaaatggaaactgaggatcaatgacttcatcaaaaccacacagctggaaaggagccgtaagaccaagtcttt<br>ggacgttaagtcccgcgcttttccctcctctcctccctggccctgcagccctcggggagggaagactcgcctccttcttgaagagggtgaacttgacagc<br>gcagccgtagcacctactctccatggtggctcccagcaccgcagggtctgcagagctgagatcacgccggccaagtcctgggccccttggaccctcaccc<br>cagc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	promoter:DNAJC17:NM:018163	
0	chr14	105859905	105859906	1001761	0	+	1104685757469	NA	NA	SINE	Alu	AluYa5	agtccaccttccaaactctttatatatatatagtaaataaactttatgtttctcagagatgacactgtaaacagtcacagatttgcatacaatacaatta<br>tgtattggctatttacaatttacagtagtggttcttcctctgagaaatataagtacaaaagctaagtaaacaatgaggtactgccatttgggatttatta<br>tgtgtcatagcttaaagaactggcctttagcaaatattaaacaaatcaacctgaataaaatagtcaattaaatgatttatttttttctaatttattagaa<br>aaaattccaccaggtttcacctcaaaatgtattgcatacgtctaaaaacaaacttaaaaataaataggaaaggtaagcagttcttca<font color="green"><u>AAAGAATGGAAGA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAT</font><font color="green"><u>AAAGAATGGAAGA</u></font>aaggaatagaatgaaagctcataaaccaggttaagtcattctgaatatcttttaaacaacataaaattcttcc<br>caacagaaaagtgaagaaaaaactatcaccatttctccactgataaaatctattttaaaggtagtctgccatatatcttctaaactctttctatgaggct<br>accatgatagtattaccagtaatagacaaaggcaccacaataaaagaaaactacagaccaatatcattagtagacatgaattaatccccaacaatagtaa<br>actaagctccaaagtgttttagaagacatacaccatgaccaactcaaatttcttcctgagatgcatacttgattcaacattctcaaatcaaccaatttgg<br>tacaccacattaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	97564144	97564145	1001762	0	-	1104685482894	NA	NA	SINE	Alu	AluYb8	atagggaattgttggaatgttatatcaagtatcacactaactatgtgcaattgagtggaagtgactaggcctgagtcctttttcctattcataccatggg<br>tatcgcttcattaatcaaagcttagcatcagtgtaaggagggcggatgtgattgcaaagcctcattatgtggctgactcagacatacaacactaagaatc<br>aattcatgacggccacgagttttccgatttttcaccatttctggggacttagaaatagattgtgaacaggcagaaacctctccctgtgctatgagtttgg<br>gtggtgtcatttcactggacaggctgggtgtggcaaagccagtggattccaaatgttccaagtgttccttttcagttcctacg<font color="green"><u>CCAACTCAAAGACAGTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>ACAAAACAAAACAA</font><font color="green"><u>CCAACTCAAAGACAGTT</u></font>atggttttatgatatgggtttccccagatggagaccccatgacaaggattgataggctagtagtatcct<br>aaaaagatgatctctggtgatgctgcagaggggaagaggtgagggcaagaaccagtggtgtatcaagccgacttccactgtagtcaactggagcttaccg<br>cattgggaactctagaaatcagtataaagagaccctcagaatcaccctgatggagcagtaaggaagctagggtgtttatctgctgcttctcctttcattg<br>ttggctgagggctactatcagaggtcttcattctcaggcactccctgctgaccctgcatgtgggcagaatcgtctcccatggcagagcagagggtggcaa<br>gaaaagcagtgtta	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	20320439	20320440	1001763	0	+	1104685404886	NA	NA	SINE	Alu	AluYb8	ctacagtgatcaaaacaatgtagtatcgacaaaatgagacacacagaatgaggaaacaaactagagttcagaaatatagtcaattagtttacgataaagg<br>tgcaaaggcaacattggaaaaaggataatcatatcaccaaatgatgctggaacaactgaatatccgcatgcaaaaatgttaacttacactcattcctcac<br>tccatatgcaaaaattaacccaaaatgtattatacaactgaatatcagtaaacttcatcaaaattaaaatttctcctctgtgaaggacactgtaagaaaa<br>gacaagccacatactcagagaaaatatttgtacccagaatatataaagaactctcaaaactcaaaattaagaaaaaaaattttaatgaac<font color="green"><u>TAAATATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>TAAATATTTT</u></font>acagacatttcaccaaaaaaagtatctgtcaaataaataaatgcaaggatgctcaatatcataatcattacagtagtgca<br>aattaaaatcatactgactataactatgaacttattagaatgactagcatgaaaaatggtgagtatgtgaagcaattgaagtttttcatacattgctagt<br>ggaaatgcagaaatggcacaggaatcctggaaaacagtttggcagtttcattaaaatgttcaatacatacctatcatatatgcctcaaccatcctacttc<br>taagtatcctaatgaaataaaaacttaagttcacagagaatcttgtacacaaaaattgatagcaatatttagttataatacagattgagtatcccaaatc<br>caaaaatctg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	25848573	25848574	1001764	0	-	1104685444806	NA	NA	SINE	Alu	AluY	atcaaaactaagactacagcaaacatcgtgttcaattctttgtgttaccttatgctttaatttctcttgggtaaatacttgaaagtggaatggtgggttc<br>atattggtaggtgtatggatcatgtttttaaaaactgccacgctgttttccggaatggttgaaccattttacactcccaccagcagtgcttgaaagttcc<br>tgttccttcatctccttgtcaacatttactttagtcagtgtttttgattttacacattctaaggtagatagtgaaatgtcattgtggttttactccacgt<br>ttccctaatggctagtgatatttgaccatcttttcatgtaatcatttgtcaatcttatgtcttctttgttgaagtgtctgtt<font color="green"><u>TCAAATGGGAAATATTTT<br></u></font><font color="red">ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>TCAAATGGGAAATATTTT</u></font>attgtgttgtttacttgttgaatttgagaattaaaaatttatatatatatattctagatattagtcttttatcag<br>atagatgatttggaaatattttctcccagtttgtggcatttctctactttaacttaacagtgccctttgaaaaacaggaattcataattttgataaagtc<br>caattaatatgatttttttcttttcatatattatgtttttactgttatgtctaagaaaacctttaactcagggtcagagattttttcctatattttcttc<br>cagaagttttatagttgtgttttacattcagacctataatccatttgtattaaatttcgtatatgattagtgagcagatcaaagtaaaagttcttttgca<br>tgtggat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:OCA2:NM:000275:18/24	
0	chr15	68195685	68195686	1001765	0	+	1104685381979	NA	NA	SINE	Alu	AluYa5	aaggctgtatgattccagctagatgacattctgggaaaggcaaaactatggacacaggaaaaggatcagaggctgtcaagggttaaagggaagggaggga<br>tgaataggtggaccactggagagtttcaggacagagcaactactttgtgtgacactttatacatttgtcaaaatccaaagaatgtacaatatcaagagtg<br>aaccctaatgtaaactgtggacttcacctaatcatgtatcactattggttcatcaattatagtaaatgtactatgctaatgcaagatgttagtaacgggg<br>gaaactgggggtgaagtgaaagggtgttggggaattctactttctgcttgatttttctgtaaacctaaaactgattttttttaaagtccttt<font color="green"><u>TTTTTTTT<br></u></font><font color="red">AGAGCGTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGC<br>TAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGA<br>GAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>TTTTTTTT</u></font>agcgtcatgaagtgtaatcacggagaaatgcataggtgttatgggagcaatctggggtagggggtggggagggcttgggagcatgg<br>gggtcactaatgaagtcaagacccttgtatgtaaagttagacagacaaagtttcaagttccacctctgccacttatccaccatgtagccttagccaagtt<br>acttaacacctcttaaacctcagcttactcctctgtaaaatggggctaatgacgcctgccaccaaattattatgtgatttaaataaaatgcaaataaagt<br>acttggcactgccagtgatgagagtcagtgcttggcgaaagagagctccttttcatgccatggtgggtgaggaggctggctcaggtggagagcaggagga<br>gaaagc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	58444552	58444553	1001766	0	-	1104685385223	NA	NA	SINE	Alu	AluYa5	actgtttctttcattaaacaaagttattaatcagtcaggagagagacttttcacattctgaatttacaaactgtgctttcttaagttaaatggcatgtta<br>ggagtatttctgatatgaaattggaaacttgcagacaccagaaggcattgcttatctttgtaaatacacatgttccaattaaaataggtactaaaatatt<br>ttggtggcacctcaaaactcccaatttagatttaatttagattaaaacacttactctttttaataaagttataaaattaattattaaaattgcctattga<br>agattaaaggcagtggaacgtttattttccttacaaaacaattttgtcttcaataagtgtgattgtgttaatcaattatgctat<font color="green"><u>CGGCAGTTGTATTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>CGGCAGTTGTATTTTT</u></font>tattaaatctgactcatttgtcatgacagtttttataattatagaaattatacctagctgcttatatagccataatcctgca<br>ataagtataaataattatctctattaattcagtttgcagttactctctattaaatcccgagttaaatggcaatttggggaccttcatttaaaatcctact<br>aaatctctgttgttccatctgactgccaaagccccacatatgcacctcctactgttgattccagaaaccaatttatgaataaaatagtttttaaaccaca<br>agtatttaaaaggtccatttaagcttgaggtttgaggctctcaagaaaaaaggaaagagagtgtacacattgggtagaggatgctgacgaaagagataga<br>ac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ANXA2:NM:001002857:4/14	
0	chr15	59003837	59003838	1001767	0	+	1104685385055	NA	NA	SINE	Alu	AluY	ggcagagctacgatgactgaccatgatcatgtgtgagcacggggcagtgtgttttaaggggtgagcactggcagaggtgggtccagaaagggccagccca<br>ctgaaaacttcccaagtgggtgaaactcaccttggcacttgctctcctctctcctgccctctatcccataccccatgtgtagcattccattcaagaaaag<br>aactctgactttcagcttgttgacaacttatctcctgaaggtgttagctgacaacttttctgaggcagaagatgtgaccaatataggtgctgggagaacg<br>gaaggaaggggttgagttacatttattcagtactttttcactcatttaaaactaagcacacaactgagaggagtactcttctactttt<font color="green"><u>AGAACATTTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTCATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGACACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AGAACATTTCTT</u></font>attgtatcactgccactaatatacgcttatagtctaaaaatatagaaacagatttgaacaaagaagaaaactaaagtt<br>acacatactatagtcctttaaaattttagagccttctagatcttttcatatatttataagtgaatatatttcttacgtgcctgtaatcatacttctgctc<br>atccgatttaatgtaattctattgtatctgtaatggaatagaaattcttgtccttggataagtcactggccctttctatcctcagattcctcattaatca<br>gtaaagcacgaatacacaggaaaattaagtcgtgaagcactaaaccacagggcggtgcgtggaggcagccaggccatgtggtggaaatactgtgaactat<br>aacaaccata	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RORA:NM:134261:1/11	
0	chr15	54620966	54621051	1001768	0	+	1104685386441	NA	NA	SINE	Alu	AluY	ctaagaaaaattcttctgccttgggatgctgttaatctataaccttacccccagccccgtgctctctgaaacatgtgctgtgtcaactcagggttaaatg<br>gaataagggcggtgcaagatgtgctttgtcaaacagatgcttgaaggcagcatgctcgttaagagtcatcaccactccctaatctcaagtacccagggac<br>acaaacattgcggaaggccgcagggacctctgcctaggaaaaccagagacctttgttcatgtgtttatctgctgactttctctccactattatcctatga<br>ccctgccacatcccccactctaagaaacacccaagaatgataaattttaaatatttatttttcctcttttaaaaaagatcaaaaatgttgactct<font color="green"><u>NNNNN<br></u></font><font color="red">GGACTTTGGTTTTTATCAAAGGGAAACTTTGGAAGTGTTTATTTCTTGAAATCACTATTTGGATGTTTTACAGCTACCTCAAATCTAATATGTTCCATAC<br>TACTATTTTGATCTTTCCCCACAATATTTTTGTCTCTATTCTCCCTACAGCTTCTTTTCTTTCCAGTAGATCACTCAAGCCCAAACCTCGTTGTTCTCCC<br>TGATATTTCCCTTTCCCCTTTCAATGCATCATCTTCCACACTTAATTTGCTACCAAGTTCTCTTCGTGGATTCATGTTCAAAATAACCTCAATCCTGGAC<br>ACTTCTCATTAGCTTCCACTGTCATATCTNNNNNNNNNNNNNNNNNNNNTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAAAGAA<br>CTCAAACAAATTTACAAGAAAAAAAAACAAACAACCCCATCAAAAAGTGGGTGAAGGATATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAA<br>AAAACACATTAAAAAGTGCTCATCATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGA<br>AACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGACCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>NNNNN</u></font>tgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaa<br>aaagtcaggaaacaacaggtgctggagaggatgtggagaaacaggaacacttttacactgttggtgggactataaactagttaaaccattgtggaagtca<br>gtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggattataaatcatgctgctata<br>aagacacatgcacacgtatgtttattgcagcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaat<br>gtggcacac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	98716503	98716504	1001769	0	+	1104685149292	NA	NA	SINE	Alu	AluYa5	aaaattagaaatcagctccaaaaggaaccatcaaaaccaggcaaatacatggaaattaaataacctgctcctgaatgattgttgggtcaacaatgaaatc<br>aagatggaaatttaaaaattttttgaactgaatgataatagttgcacaacctatcaaaatttctgggatacagcaaaagcagtgctaagaagaaagttca<br>caacattaaatgcttatataaaaaagtctgaaagagcacaaatagacaatctatggtcacacctcatggaactggagaaacaagaacgatccaaaaccaa<br>acccagcagaagaaaagaaataatgacaatcagagcagaactaaatgaaattaaaaccaaaaaaatacaaaagataattgaaacaaaaagccggt<font color="green"><u>NNNNN<br></u></font><font color="red">GGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG<br>GCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGC<br>CACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>ataaataaaattgatagaccagtagtga<br>gattaaccaagaaaagaagagagaagatccaaataagcttaattagaaacaaaatgttaaatattactactgatactacagaaatacaaaagattactca<br>aggctactatgaatgcccacacacataaactaaaaaacccagaggacatggataaattcctggaaatatacaaccctcctagattaaaccaggaagatat<br>agaaaccctgaacagaccaataacaagcagcgagattgaaatagtaataaaaaaatgccaacaacaaaaaagtccaggaccagacagattcacagctgaa<br>ttctatcagacattcaaagaagaactgatgccaatcctgttgacactattccacaggggagagagag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	93928784	93928785	1001770	0	+	1104685311463	NA	NA	SINE	Alu	AluYa5	tatcagggggctgcttaaagtaccactgccccagtaatttgcacaaatgcaaatttgttcagaatgattctgcatgggaaggaaataaacatttgctgtg<br>ttgagtcactaaaattctgaggttgtttacatagtgcactattgccttttcctggctaatatatggacctagtcataccttttacacatattaaaaagtc<br>aagtctcttcctttcacagctaagcataatcagcaaaagatatcctaatacttacctagttcatcagcctttaatggatgttaatccaactttccaaggt<br>catatatatttactagaaacagagaataaaaaataatttagctagtcctaatccaaagctctttgtatagcatctagtctgtatttt<font color="green"><u>TCAATTTCATCTT<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCTCGTCTCTACTAAAAATACAAAAAATT<br>AGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGA<br>TCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCAATTTCATCTT</u></font>atagttgctgtt<br>tccatccttgggtaatcttatcccttccattattttaaactgctcttctatgtagaagacaacagaattatcacctcgaaggatttctccttaaattcct<br>caaagtatctcacacttaaccaccgaaacaacatcacactcactttccaggtgccatgatttatgcatcacttgactctgaacaatggcaaacatatttc<br>tttgtagtaggactcaataagtgtttcaatttaattgaataaaaaattaatttctattttttcaccttgattcatttgcactgcatctttctaatcactg<br>gaattaagaacctcaaagtcatcttttatttctttttcttcctcaacactaaaggccaaatggctgccaagacct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	90374058	90374059	1001771	0	-	1104685527938	NA	NA	SINE	Alu	AluY	acgtagcttttgaaaaccaactaaccctttggggcattttgtgggataaaacacacagaaagaatcaacaggaggatcgcattcaattttaagccaaact<br>ttgctatgctatggtaggaacgtgggcagagcccgtgttcaagataaatgcccaatcccctttgggactcctatcaccaactgttacgaaaatgtagccg<br>aggacattttattagagtaataatgcaacggttgaagccagactgagccggcaggctgcaattcttagcagctccgaggtaattgacctgtggccttttg<br>gttcacagactcttcacctgagccaagaaggtgcctgattgaatcatagatcttttatctctcataacatgagacggaagagttctatt<font color="green"><u>AAAAATGTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAATGTATG</u></font>agccaagtgagcaggcctcagctgcactgggagcccagatcctggggccagaggccattcacctttccttttgacaaaatcttatgaaata<br>attcatttacacagtgtcagcgcgactacatatatgtgtttgggaaaaaaaaaatacaaggaggggaaaaaaaacagtcaaaaatgtactttttccctgg<br>gttgtaggaaaatgattcttattttcctgcttagcctttattgtgtttccaaattttctacagagaatatgtatttctttatgagaaaacaaacattttt<br>caaaaacaaatgttcacatgagtctttgcccaggcactgactacgtttaagtaggtaaaagatgcggaacggagagtttatatatggacacctaccaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SLCO3A1:NM:013272:2/10	
0	chr15	95571239	95571240	1001772	0	+	1104685311038	NA	NA	SINE	Alu	AluYa5	agaataataaaagaaaagaaaaaaatgaagaaaatcaattaactcagaaattggtttcttaaaatttcaagaaaattgatcatcctttagctaaactaac<br>agaaaaaagaaagaagacataacttatcaaaactaggaatgaaaaaatggatatcatcattaactctaacaaatgaatatgattataagggaatatgatg<br>aacatttcttcatattttatattttgatatgtcagaaaattaggagagataaaatggcacgtgccttaagagacgcaaattaccaaaattgacttatgaa<br>gaaatagaacatttgaatatactgataacaagcatagaaagtatgtaataacaaatatccctctctcccaaaaatttcaggctc<font color="green"><u>ACCAAAGAAATCTTCT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>ACCAAAGAAATCTTCT</u></font>aatacaataaaatatttaaacaaaaccaatcttttacaagctctttcagatgatagaggtagagaaaacctgt<br>cccaactcattctaaggactcacgattactctgaaactgaggcctgatgaagacaccacaataaaataaaactgcagaccaggaacccttataaacagaa<br>acacaggtatcttttaaaaaaattagtgaatgaaatcgagcaacatattaaaaaagcatcatatatcatgacaagtgaggtttactctaggaatcaaagc<br>ttagtttagcatccaaaaaaattaatgtaatgtaccatattgatagaataacaaacaaaaatagtatccttttaatagattaaggaagcatattacaaag<br>tttaacacaca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	98160843	98160844	1001773	0	+	1104685149446	ACTGCCACCACAGACTCAGTT	TCACCAGAAGATAGACATCCTGA	SINE	Alu	AluYa5	gctggtcttgaactcctggcctcaagcaatcctcctgccttggcctcccaaagtgccaggattacaggcatgagccaccatgctgggtctatatatacat<br>tttcttttccatgttatatattctgtatgcatccttctggaatttgtttttctcacaatattatattgctaaagttcttattgttgtttattgctggcgt<br>tcattctttttgactgcttgtgaaatcaccagaagatagacatcctgagctctcttaagaactgctgctgggagtatacactggtatgaccactttggaa<br>aacagtttggctccatctcataaggttcaatattcacactcctcccagcccagtaattctactctacatggaagagaaattcttgcctatat<font color="green"><u>CCTGTTTT<br></u></font><font color="red">GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>CCTGTTTT</u></font>gatgtggacaaggaatgttcctaacagctctgttcaaaatagcaaaaacctattgcccatcaactggagagtaggtgactaaattgtgc<br>tttttattccctttgatttcctgtagtcttacgatgcaagtggctttcccatggctatcttggggagggggagactcttggcaactgagtctgtggtggc<br>agtcctgcttagccctagggcaatcggtgctgaccaaaacaagagtaaacagaacaaggtgccccattgagccaatgccttgagtccctggaggtacagt<br>cttgtatctgtaggaaatagccatcatacaaatcagtcttttcaaatgctctgtcactgggctgagtccaaaggacattctcctttaaaacattataaag<br>ttt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	678	368	NA	intron:C15orf51:NR:003260:2/5
0	chr16	51741170	51741171	1001774	0	+	1104685694776	NA	NA	SINE	Alu	AluY	gtctccgactattgtagaactttctacaactatattgtagaattatttgtttttcccatcaattctgtgtatttttacttcataaattttgtgggtctgt<br>taggtgcatacatgtttataattggtatatcatattggtagattgagtctctttcatcagtgtgtaatatccttctttgtctcttgtaacctttctctct<br>ctgtctctcgtacccagccatttttttttttttcaggctaaagtgcagtggcacaatcatagttcactgtaacctccaactcctgggctcaggagatcct<br>ccagcctcagcctcccagttagctaggactataggtgtgcaccatcacactggctaatttaaaaatatatatatatatattttg<font color="green"><u>AGAAATGGGGTCTTGC<br></u></font><font color="red">CGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGAAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCGCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AGAAATGGGGTCTTGC</u></font>tgtgtgtcccaggcaggtcttgaactcctggcctcaagcagtactgttacctcagcctcccaaagtgctgggattgtggcag<br>gtatgagtcaccgtgcaaggccctcttgtaacctttttttacttacagtattttgtttgatactaatatcccagctctcttttggttactatttctgtgg<br>aatatattttttcatttcttgttttttatcctcctgtgactttgtatttagagggaacctcttgtaaacagtatataagatggattatgtttttattttc<br>atttttatccattctgctaatcttttccttttaagtagaaaatttcattcatttacatttaaagtaattattgataaagaaaacatacttctgttatttt<br>gc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CHD9:NM:025134:1/39	
0	chr16	58598669	58598670	1001775	0	-	1104685220047	NA	NA	SINE	Alu	AluYa5	aatatgacttgaagaaaatacacacacacacacacacataccagttcaaggttatttgataaatttgaatgtatttgtctaattatatatttagggaaaa<br>atgaatctatgtgttttacttgaaaccatacaaaaatcatttgtgaattcagaaaaaaagtaaaaactctgtgaatacatattttttagttgggaggaaa<br>ggaggctgatgaacgcaaatcactttggctcctagagtcagacaacctgtgttccaaacatgtcttcatcatttattcaccatgtgacattgctcagcct<br>cccttgaagagttgctctgaaaattgaagttaatatgtaacaacactaaactcagccttgtccatactgtaggaactgtgtgatt<font color="green"><u>GAAAACTTTTCTTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGAGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAGAAAAAA<br>AAG</font><font color="green"><u>GAAAACTTTTCTTCC</u></font>agaaatttaattttattgtagatttatttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagag<br>agggagagagagaacatgccaccatttgttgctcattttctcaaagattttttcaaagtatataggtcataattatattatctttcctagatgaaatcta<br>attgaggcattaagtgctcatctgtctctgaaagaaaatgttgtttcctggtgatttcacttgatattttagctgtgtaagatgggaagcaggataagaa<br>aaagaaggatgaaggtaagttagccgggtgtggtgacacatacctgttagtcccacctacttgggaggctgaggtgagaggatcacttgagcccagaaat<br>tcg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	23772801	23772802	1001776	0	-	1104685110006	NA	NA	SINE	Alu	AluYa5	actttaagccactaagccttgaggttatgtgctatccagcaatagataattgatttgttgggtgtccagtcaaatatctggaagtagaaccaacaaagga<br>ttcttctatataacaagtcagcttagaagagaactaacccggcctcaaagagatctgcttgggatgtccacaggtgatatggtttggctgtgtccccacc<br>caaatctcatcttgaattgtagctctcataatccccatgtgtcatgagaaggacctggcggaaggtaatggaatcatgggggtgggttttctaatgctgt<br>tctcgtgatagtgaataagtctcacgagatctgatggttttataaagggcagttcccctgtgcacgctctcttgcctgctgccatgt<font color="green"><u>AAGAAGTGCCTTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGTGCCTTG</u></font>ccttcctttgccttctgccatgattgtgaggcctccccagccatgctgaattgtgagtcaattaaacct<br>ctttcctttataaattacccagtctcagttatgcctttattagcagcgtgagaatggattaatacaacaggcaaccagagaggcaagaattctgactgat<br>tgaaaaactagaaagtctgacaagagccagattgttctaataactaaaaacaagaaaagtgcttctttatttcacttttaggaacacaaatagaactcac<br>tctttccctgctatgtttgataagataaagacgtccagagttttgcatcttagttttaccagtcaagtgagagataaaactagatacatcaccgcaaaga<br>aagacaaaggaaattatg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PRKCB:NM:212535:2/17	
0	chr16	87809200	87809201	1001777	0	+	1104685078108	NA	NA	SINE	Alu	AluY	tataccacatataaaaattaattcaaaatgaatcaaaaacctaaatgtaagcgctaatgtataaaactcttagaagaaaacatagagaaaaaacttcatg<br>gcactggaattggaaatgatttcttggttatgaaatcacccacacaggcaactgaagaaaactagatgaattggactacatcaatattacaaattttgtg<br>catccaaggacaatcatgagagtgaaaaggaaacccacagaatgggaggaaatatttgcaaatcatgtgtttggttaaggattaatattcagtttattaa<br>gaactcctataactcaagaataacaacaaaaccaatttaattcagaaaaggacttataataaagaagataacagatggccaataag<font color="green"><u>CATCTTTTCATGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTCGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CATCTTTTCATGTT</u></font>tc<br>aacataactaaacattagggaaatgaaaacaaaagccacagtgagatcacattaccccggtggtgatggctcttagccattaaataggaggtaactgttg<br>gctggatgtggtaaagttggaaccttgtgcacctgctcatgggaatacaaaatggtgcagcagctctggaaaacaggacagtggtttctcaaaacatcag<br>acagaattatcatgtgacccagccattccacttttgcatatatatccaaaagtgctgagaacaagggtccaggatatttttgcacacgatgctcaaagca<br>acattattcacaatagcctgctggtgccaaagtcaaattttaatacattcagttacttaaaacatatccgtgcggtggctcacg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	67953349	67953350	1001778	0	-	1104685222157	NA	NA	SINE	Alu	AluYa5	tgtgtgtgttgtggttggtagttagaggaggcttcactgagaaccatggccttgaaagatggatgagatgtcacttagcagggaagggactcccaagcag<br>aggggctacagagaggcaggaaagtacagagcttatggaaggaagaaagagcagaacagtgtggctgtgctgtttgcacaggtgtgggcatcgtggggcg<br>gttggttagaaactgacgggccagactggatggtgtggactcccccatacaggcatatagatgccactgttcaggcagagagaagccattagggaataga<br>agaggcatgtggtaattttagggtgattgtcctaaaatcatctttggctttggaaggggaagagcctagcggcagagactctagtt<font color="green"><u>AAGAGGCTAGTGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAGTTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGAGGCTAGTGGA</u></font>tactgatgaaaggcgccgtgagcttgaacaagggggaatggaaacggaaaaatcagtccagatataggaagaa<br>ggcatgtccaaggaagagagggaggggtttgcaggttctaaatcagaaaaatactgagacctttaaaagagtcaaaaccaaacaagcaaaacaggaaaat<br>gaacagattctttagaggggtggtgatgtgcttgatgtactcagtgctgaatttgaagggtgtcctgcagcctgaggggtgttacgtggagatgcctggc<br>cagccaggagaaaggacagtggctttgggaggtgcatgcaggcgaacctcgattgtggtcacaacgggacaggaaggagtacagggccaagagtgagcca<br>agaccagaatctg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TERF2:NM:005652:7/10	
0	chr16	80721699	80722175	1001779	0	+	1104685107806	NA	NA	SINE	Alu	AluY	cgccaccacagcagatttcaacctcacttctaatcaacaatgcttctgatttcagtgccaaagattctcaggtgccagggtcacattagataaaagtaat<br>cttgtaaatttgttaatttctaaaaatctaggtgtcaatttccctgaatcaagggaaaaaagccatactccactgattaacactgttctggatcccagcc<br>actgatatagtttggatatttgtcccctccaaatctcatgttgacgtgtaatttccagtgtttgagattgggcctggtggggggtgtttgggtcatggag<br>gtggattctctcacgaatagcttggtgctgtccttgtgataatgagaagttatcactctgtgtatatatgtgtatatatacacatgcgtgtgtat<font color="green"><u>NNNNN<br></u></font><font color="red">CACACATGTATATATATGTATATATGTGTATATATACACACGTGTGGATATACACGTGTGTATATATATGTGTGCGTATATACACATACACACACACATA<br>TATGAAATTGTAAATTACCTAGAGCACTCAAAACAATTTTGAAAAGAAAGGACAAAGTTGGATAAATACACTACTGTAGTTCAAGACTTAATATAAAGCT<br>GCAGTCATCAAGATAGGTAAATATTAGTGTAAGAATGGACACATGTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCA<br>GGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTA<br>CTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGTCTGGGCGACAGAACAAG<br>ACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>cacatggataaatggagcagaatagagtgtccagaaataaatccacagcagcgta<br>atcagtaccaaggataatctgtagggaaaagtgtggtgttttaaccagtagcaccagagcaactgaacatttgtatgaaaacaaaacaaaacaaaagcaa<br>accaggaatctcagccctttacttacaccataaacataaataaactctaaataaagtatagacataaatgtaaaagttaaacctatacactttttagaag<br>aaaactgtcataaccttgaggtgggcaaagataagaaacaaaatatacatcataaaaaatcctgacaaatcaggcttcatcaaattaaaactttctgcct<br>ttggagagatagcactgcaattacaaaaaggcaagctatg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	13377572	13377573	1001780	0	-	1104685551306	TTTTCAATGAGTTCCCAGACC	TGCAATCAGATTTCTCCTGCT	SINE	Alu	AluYa5	tctgagacatctgtgaaaatgctctcagagaagctcttcagggatttacagtccttcctatgttaagttctttctcttctgatttgttacattaaataag<br>gcaggaattttaaacaagcaagaaaagaactttatactctagactatgatctttgacgacaataaatgtcactgaagattttgtttggttctgtttcttt<br>ttgggttattgctctcctatttgatcaaattatagaccctatctaaagctttaggaagttgtttccatgaaagtaacatctttctatcgtgatgcaatca<br>gatttctcctgctttttgttattttgatttaaattctttgcaatgaatggaaccaatctcaaatgacagatacagagttgcctt<font color="green"><u>AAAAATTAGTAACTTC<br></u></font><font color="red">GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAA<br>AAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCT<br>TGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTAGTAACTTC</u></font>gt<br>ttataagtattctttgtatattttcattattatttttcttacctcccctttaaaggtctgggaactcattgaaaacagagtctctgttccagacctttct<br>ccttccaaacaagacttaggacgatgacatttcctttttctgtttcttcaaggttgctgtgaggataaagtgagataacctacaaagtcaccttaagcag<br>tgtgtggattgtagcagatatgtattaaatattcgtttctttcctatttcccttattaagcagtttaatttctattcagcagtgcatgccatttacaagg<br>ttggtatgcaaatgtgaaagcctaacttgactatatatattaaccttatacatgtagatattttacactttacacagttccc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	483	186	NA	intron:HS3ST3A1:NM:006042:1/2
0	chr17	42757410	42757411	1001781	0	-	1104685415529	NA	NA	SINE	Alu	AluYa5	ttctttctgaaaggatcactctggttactgtgaggagggaaatcaggtaggtctgggttcctgaatgccaagtgaagaaagtacttcaagagtgagcaat<br>caggctgtgcatggtggcttatgcaggtaatcccaacactttgatgcgggggtgggggtctaagcaggagggctgcttaaggccaggagttcaagaccag<br>cctgggcaacagtgaaactcccacctctacagaattttttttttaatcagctggacatggcgaccttagtcccagctactccaaagactgagccaggagg<br>atcttttgagcccaggagtttgaagctgcagtgggctatgattgcaccactgcactccagcctggacgacagagaccttgtct<font color="green"><u>AAAAAAAAAAAAGGGGG<br></u></font><font color="red">CGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGC<br>CTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCT<br>GGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAAAAAGGGGG</u></font>gggtggggtgggcggttaagatcagtactgaat<br>ggttcgctaggtttcacaacacggaggacactgacaaacttgaaaggagccatctgggtggggtggtaaggagacaatgtcctcagagtgagtacaagag<br>agaacggggtaaagaaattgaacccagccagtagggtaggctctttcaaggaattacgttgttaagagaaataaggcagtagctgagaggaaaatggggc<br>tgtgaggctttaagatgagaaaaacaaaggcgtcttcactgaagcatgactctgtatgacatcctttcacaaaataccttcctctttcctctcatgccac<br>atttccctcacaagccgcccgactcgctcgcttttctctcgccagaggga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C17orf57:NM:152347:2/25	
0	chr17	20402144	20402145	1001782	0	-	1104685503408	NA	NA	SINE	Alu	AluYb9	cctggtcagttttttaattgatcttttgtataatttttttgtttaagaaagggatcctttggcagaaagaaaatctgaaactctaaatactgtccatttt<br>atccatatattgttggtcataccctcaaaatatatcctgattccagccatttgtcatgaccactttaatctgagctcccttcatttttcaccgggattat<br>tgtaccagcctccccagtggcctccccactgccacctggcccctccccagggctcagcaagatttttctgcaaaggacctggtagtaagcatcttgggct<br>tcgtggaccctgtggtctttgttgcacctactcagcagttactcagcttcgccactgcagccccaaagcagccccagac<font color="green"><u>AAGAAGCGAACACAGGGGAGG<br></u></font><font color="red">CTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGAC<br>TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGCGAACACAGGGGAGG</u></font>actgtggctccaataaacctttattcacaataggaggggggcttc<br>atctggattgtgggccatagtttgaccacccctgcctgacttcatggcaacactaaccttcgtatttacgcctcttttttttttaatatttatttttgtt<br>gtatgtatttatgatgtacaacatgatgtttctttttttttttttttttttttttagtatttattgatcattcttgggtgtttctcggaaagtgggattt<br>ggcagggtcataggacaatagtggagggaaggtcagcaaataaacacgtgaacaagggtctctggttttcctaggcagaggaccctgcggccttccgcag<br>tttgtgtccctgggtacttgagattagggagtag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	10828854	10828855	1001783	0	-	1104685550497	NA	NA	SINE	Alu	AluYa5	ggagttgggagagcaaggggaggcacagggctgcctcctgactgtcattcgtcacaatggcccatggcactctgagttcactgaagatgtcatccacatt<br>ctgtccaagggaaagggctgtgaaatgtaaggggattgactctgcactgcttcaaagaatgagtgaggaccagtgagtagaagttacagtgaaggctatt<br>ttcaatttactgtaggagacagaatagcagacgggctgagtgcatcagcttcggagtcaacagctgcacgatctaaggcatgtaacttgtctttctgaac<br>atcagttttcacatctatagagtgagaataaagtagagtgcttagcatttgcctaggccatattatctttggtttcattagcatt<font color="green"><u>AGAAAGAGCATTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGAGCATTCTG</u></font>cagcagttataggtcagcctctgagactagaaggatttgggtaaatgaccatctgacaaggaaaa<br>aatatctcagaatggagacaggccctgtccaacccaaggacctgaagtctgggcaatgcctctctaagcagttcaccaactgcaggtcccctctgactta<br>tgtttccaaaacagagttcttgctttgttttgctttgtttttctttgttttgtttcccagaagaggataaaagagcagaacaatgtactgaaagtaacta<br>gaagtttttttacatgtatcctcagggcagcagtttctgaggtctctgaataggaaaagagcaggctgcatgtcttcagcaacatgcctgctttgtgctg<br>aatgaggatagggcttctgg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	52302582	52302583	1001784	0	+	1104685418180	NA	NA	SINE	Alu	AluYh9	ctagagattgaacccaggccatcctccccactgcctttcatcatcaacacaaccaccaccaacagtattttaaaagtgttaaatattggcagacgtgtca<br>ttgttctgagcactaggactagggcttatgcggctgtctgaggaattccctgtacaaggaaacatcatataccaaaaagttactcatggaaggagtttgg<br>agatgatgagctaaaagtattacacatggactattgtaaaagaaaaaaaagcaggcacaataaaattttagaatgtacttaagaagcaattcgtgacttg<br>ggaaaccccaaacccaatgaggatttagtgtttcaatgacacaacatcagaggcaagtattcatagagtgcatacagaagcaaaat<font color="green"><u>AAGAAATGATTTGA<br></u></font><font color="red">ACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGGTGAAACCCCGCCTCTACT<br>AAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGC<br>TTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATGATTTGA</u></font>ttgg<br>ttgccttttttggcttactttcttggaaagtccccagtctcatgatcatgttagttggctgcttatgattggctgaggttaagttttgtatctaacataa<br>gcatttaccaaaaatgacccaagttaagtttcatttatgtttacagtttaagtaggttagggctatttttaaggcctagttggtttgtttgctcaggaat<br>gtttcaagcctagtttccattttaattttgctttgacagttccccacttttagtcaccccgtccgcaagctgagagtgtgaccaaatggcatagcattac<br>tctcagttaccactattgacatagtctaggaagaagagtcagatgtttatcaatagctgccctagggctcagagtcaccctc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	49312127	49312128	1001785	0	+	1104685417467	NA	NA	SINE	Alu	AluYa5	caatcaataaatgtgattcatcacataaacagaactaaaaatgaaaaccacatgattatctcaatagatgcagaaaggactctcaataaaattcaacatc<br>tgtccatgttaaaaattatcagcaataggcattgaaggaaaatacttcaaaataataaaagtcatctgtgagaaacccacagacaacatcatactgaatg<br>ggcaaaagcagcaagccactccccttgaaaactggaacaagataaggatgccgtcttgtaccattcctattcaacatagtattggaagtcctggccagag<br>caatcaggcaagagaaagaagtaaaaagcatccaaacaggaagaaaggaagtcaaactatacctgtttgtagccaatatgattctatact<font color="green"><u>AGAAAACCCC<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AGAAAACCCC</u></font>atagtatctttccaaaagctctttgatctgaaaaataacttcagtgaagtttcaggaaatgaaatcaatgtacaaaaa<br>tcaatggctttcctatgcaccaacagcatccaagctgagagctaaatcaagaatgcaatcccatttacaattgccaaaataaaatacaataagctaccta<br>ggaatacagctaaccaaggaggtgaaagatctgttaaatgagaattaaaaaaataagacatcagagatgacacaaacaaatagaaaagcatttcatgcta<br>atggataggaaggatcaatattgtcacaatggccatactgccgaaaggaattaatggattcaatgcttttcctatcaaactacaaataacatttttcaca<br>gaattagaaaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	22792028	22792029	1001786	0	-	1104685181528	NA	NA	SINE	Alu	AluYa5	ctgatgtctagaatcgtgtttcctaggcttcctttcttttttatctgtgccaatcctatgggaattttcattactcctcattcttttaagagtcaaagaa<br>cgtaaacaactataagcaaatttagtatttatatccctgttatgcaataaagacaaaacaaaagccagggaagtgaagtaatttgccaaatatcatatag<br>cctggcaaagtcaagactagaaatgtctgagaatcaggcgcagtggctcacgcctgtaatcccagcactttgggaggccaaggtaggtggatcacctgag<br>gtcgggagttcaagaccagcctgactgacatggagaaaccccatctctact<font color="green"><u>GCTGGGATTACAGGCATGCACCACCACACCTGGCTAATTTTGTATTTTT<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAG<br>ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAAAAAAAA</font><font color="green"><u>GCTGGGATTACAGGCATGCACCACCACACC<br>TGGCTAATTTTGTATTTTT</u></font>tactcaggaggctgaggcaggagaattgcttgaacccaggaggcggaggttgtagtgagtggagatcgtgccactgcacta<br>cagcctggatgacaaagagtgaccccatctaaaaaaagaaaacaaaaacaacaaaaaagaaagaaagaaataagtagaatgtaatttttcatgtcataaa<br>cataaaatgtacctaggcacttttctacctttcttttgcacaggtgtgagtatatgcatacatacctgcctgttcacccaacataacccacacatacaca<br>cacaatctactcacaccacagctatctttgcaaaataggtaactacaactccagaagaagattctctgat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CHST9:NM:031422:4/6	
0	chr18	25785875	25785876	1001787	0	+	1104685180818	NA	NA	SINE	Alu	AluYa5	atgttatcaatcactggcatgttgctaaatatggtttatatttctcatctcttattttgcttgcctttctactgtcattacatatatatgtatatgtatg<br>tatgcgtgtgtatatataggtatatatatatgtgtatgtatatatatatagtgatggaaactaacaatgactttatattgacacagatctgaactatgtc<br>attttgtcctattattcttagctaaaccaacaagttcaagagtcaacccctggccatggaaatttataccacattctggatagacaggtacaaaggaggg<br>ataaaaaggtaaaagagtttggtgtactgacagaagagtggctgccacttgggccatgactcctcataaagtgaagaagtatttac<font color="green"><u>TCAACTTAACTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>TCAACTTAACTCTT</u></font>aattattgaatggtaaatgttgctgtatgtagccatgtttacattcaacaaagtgaggttaataatgttatcaagtgtg<br>tatgtttcaatctttttttgaaaacaaagttatttaagtaaatttctgaaattattaattaatcttgcactttaactttgtcatctcaatttttttcagt<br>cctcatgggctaaattcagtcaatatacctgtttttgttgggttgacagaatactttaaaaaaagtattccaagatatttagttccaatgcctcctacca<br>cattattgcttcaaatagcctctctatctatgaatgaaaactgcctaacccatagtggcatttgggtttaaagctcaaatgaaaacaaacatatacgtaa<br>aacacga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	26054860	26054861	1001788	0	-	1104685180719	NA	NA	SINE	Alu	AluYb8	cattttctccttggactctggtctttgatgcatttctttttctctccacagaatttgtcacctatactacaaagaccattccagctcatccatatgtgtg<br>ctagataccttttctagttttctcagggttgccgtaaaaaaaggaccacagactaggtggcttaaaaaacatacatttattttctcacagtctggaagct<br>agaactctgagataaggtgttgaaagggttgtttttttccccaaggctgctccttttggcttctgcctaggcctttacatgttcttccctttgcactaat<br>atgtgttcaaatttgtgttcaaatttcctggtcatattggattatgtttcattttaatgacctcattttaacttatttacctcttt<font color="green"><u>GGAAATAGGGTCTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>GGAAATAGGGTCTT</u></font>aaatatagttacattctgaggcactggagcttaggacttcaatatataaattttgggggaaacacgattcagcttatgaa<br>acttggtacttctcctaatttagcacaaatttctagatgtataatatttatttatttgtatcctccagaagactatgtaatttgagaacaagttttgatc<br>atctttgtcttatcatatcactggagcttgatccaatactcagtacatactgatgaataaatgggtatgagttttttcaaaattaattgacatttgctca<br>gatctatactgaaatttattgttcctctatattacaaaaagtctaccgggagaggtggaggttgcagtgagctgagatcatgccactgcactccagcctg<br>ggcgac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	27257623	27257624	1001789	0	+	1104685180479	NA	NA	SINE	Alu	AluY	tacaacttttaaaaaaatgaaaaaaaaaagagagagggaaacaaaaaaggaccatactttcgttagaaattcacagagctaaggttttctgagactgata<br>agattaccgagttaaaagtaagagagaggctgaatgtgtgtttgatagggaggcagcaagtttgtgtggtgagtgatggtgaggtgttggcacaaaagtc<br>accatgcatgcatgtgatcagaataaatattgattgactaggaagtcttgttaaatacacattatgtatttaacaaggaggcactgactgggtgatgact<br>ttgatatcagtgtggcatgagccaccatatgtagagaacatgaaactagataggaattattaaaaaaaaaaaaaaaagagt<font color="green"><u>TAGTAAATACTTGTTTTTT<br></u></font><font color="red">CAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGT<br>GAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>TAGTAAATACTTGTTTTTT</u></font>tatgtgtctagca<br>ctaggctaattgtttctcaaaatttttcttatttaatgcatcttatgatctttcttttatagttgaagaaaattgaaaagaaaaactataaggaaatcac<br>cgtgaaccaattccagtgctcattcatttattcattaaatgttttttgagcattttcattatttgcatatgagctaagggctaggtatagaaacgtgaat<br>tagggtccttaccatcaaggacctcagtcagattcaggaagaagtaaagggttgaaatacagtatgagatacagttatacaagggggtatgaatgagtgc<br>taagggagaagagaagaggggcctagcattaatgagctgggaaaggcttcccataagaaatgaacttt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	6511718	6511719	1001790	0	-	1104685494917	NA	NA	SINE	Alu	AluYa5	cttggagcactaaaggaaccaatgatagagttggaagatgcttgaaaagaggcaagctgtacattagagttgcagttccacaggtggacagcaggggaag<br>caagagatcaaaaaaggtttgagaggtcctagaacctctagctgggctgatgggtgaaagccttccctgcatgaagccagtatgtaaagactgggagatg<br>tggttgatttttcaaatgcccaaatttcaacagattataaggcataaaaatgaaaaaagaaaacacaacctaatcaacaaaacaaaatgaatctctcaaa<br>actgatccaaaagaactgcaaatctatgaactccctgacaaagaatttaaaataacagtcataaagatgaccaatgagcttt<font color="green"><u>AGAAAAAGAGAACACATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAT<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAAGAGAACACATA</u></font>acccaattaaaaagaaatcaggaaaactatgcatgagcaaaaggaga<br>aaatcaacaaagagatggaaactataaaaaaaaaccaatcgagtttttattcttcctttaaaagacagttatttgaaaaaaaaaaaccccaaaaatatct<br>gactaaaaaattcactaaaggggttcaacagtagacttgatcagatagaagaaaaaaatcagtgaatttgaaggcaggtcatttgaaatcatccagtcaa<br>aggaacaaaaagaaaaaagaatgaagaaaagtgacataagggacacaatcaagtgggcccaacgtatacattatagaaatccaagcagagagagagagag<br>agagagagagagagagaaaggagcagagaaattat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	2294407	2294408	1001791	0	-	1104685493662	NA	NA	SINE	Alu	AluY	agaaattgaaataagatgtagtgcataatttacttatcaagttattattgtacatgcttgctggaaactcccatggcaaaatgtgtaaacaaataaaagc<br>aactaatttttttcagtttgtcagtctagctgctccagagggattgctctccaactagtcagcccatcaggaaatagacatggagcagaggtagaaagac<br>ttacacactttctatttatttctacatcagaggaatgtgggctttcctgttatgattcatatttgatatctgcaaactgtggaaatggctggcctcttaa<br>taccttgttgaagaacggcagcaacaacaaatgcataaagtcattgtcatttgtgtcacaaaactttcctttgattctttgggtt<font color="green"><u>AAAAAGCCCAGTAGA<br></u></font><font color="red">TTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCG<br>GGCGTGGTGGCGGGCGCCTGTAGTTCCAGCTACACGGGAGGCTGAAGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGTTTGCAGTGAGTCGAGATCGCG<br>CCACTGCACTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGCCCAGTAGA</u></font>gcaaaagtttcagaaccttttacacct<br>cttggaatttacataatttaaccatctacaaattaaattattaaacagtattaaaggcagggttcccagagtaaatgatgcatctttgccattcatttcg<br>tttgtcccattcagttaaatttaaccaataggaaaacctagactaaaacaataatagaaaattactgcaaattagtcagctggacttgagaggcacactg<br>taaaaacatgtctaatctattttcctttgtgagtctaaactacttttccaattacttggtgagccctctccaactttacaaggactgttaagagagaatc<br>taattagagatctgttcactgaagtacctagagggtcattttgccaggagcaaaaaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	10901136	10901137	1001792	0	+	1104685755944	NA	NA	SINE	Alu	AluY	catcatctcaggttttcacttaaggctaataagatctaacatttttaataattgggaagacatcaatagaaatataaacttttctgttctaaaactgtag<br>aattggttatgacataggaggtgatgaagctaggggagagtcaaccatttcctgggattctctaattctgtaacttactttgtgtactgttttacagttc<br>aagatgcgttttcacatcaattgccccattctatctttatttccactctgtgtgcaggcaaggctttatgaagtaatgctctacaaagaaactgaggctc<br>ggaggggcaaaatgacgacttgatcaaggtcatacagttaccaaaagggtggtgacaggactattgatttataatcaataaattactta<font color="green"><u>AAGAAATTACT<br></u></font><font color="red">TGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCGGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAATTACT</u></font>taaaagacaagagtaactaaaatggagacatgccaacccttgcttacctttcaaagccgatctgccggaatgtcttttc<br>ccatgttgagcctgtaatggaagggagagacataatcagggcacatcaaggactcagatagttttgttcggcttttccacacacgctagatatttggttt<br>tatgtttaggtaggatgactggtttttcttcaaatgcattactccccacctccagtcccagatggcctttgtagagtacagaaaatttaataaaaagtcc<br>gcatatacagaagtcgagtccacatagggatttaagtgcatataacctgcaatgtggccagccgcaatggctaacgtctgtaatcccagcactccgggag<br>gccaaggcag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	48185370	48185743	1001793	0	-	1104685128457	NA	NA	SINE	Alu	AluYa5	ggatggcattgaatctgtaaattaccttcggcagtatggccattttcacgatattgattcttcctacccataagcatggaatgttcttccatttgtttgt<br>atcctcttttatttccttgaacagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttggattcctaggtattttattctctttgaa<br>gcaattgtgaatgggagttcactcacgattcggctctctgtttgtctgttgttggtgtatacaaacaaccccatcaaaaagtgggcgaaggacatgaaca<br>gacacttctcaaaagaagacatttacacagccaaaaaacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccaca<font color="green"><u>NNNNN<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCGTAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAACCCCACAATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGT<br>GGAGAAATAGGAACACTTTGACACTGTTGGTGGGACTGTAAACTAGTTTAACCATTGTGGAAGACAGNNNNNNNNNNNNNNNNNNNNCATA</font><font color="green"><u>NNNNN</u></font>gatg<br>agctcatgtcctttgtagggacatggatgaaattggaaatcatcattctcagtaaactgtcacaagaacaaaaaaccaaacaccgcatattctcactcat<br>aggtgggaattgaacaatgagatcacatggacacaggaaggggaatatcacactctggggactgttgtcgggtggggggaggggggagggatagcattgg<br>gagatatacctaatgctagatgacgagttagtgggtgcagcgcaccagcatcgcacatgtatacatatgtaactaacctgcacaatgtgcacatgtaccc<br>taaaacttaaagtataatttaaaaaaaaaaaagaaaacaaaaaagaaaactccattcttaacttcgggctgcaaagtagaaatctgcccat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DCC:NM:005215:1/29	
0	chr18	64550155	64550156	1001794	0	+	1104685563731	NA	NA	SINE	Alu	AluY	gcatattaggttggtcccatctgaggttccattgcctcaaggtcattttagtggccagagggataaacaattttatatatgtatgtatacatatataata<br>taatataaacaattttgtatatgtatgtatacatatatgatataaacaattttgtctatgtgtgtatataatataatatatgttatatgatctcctatac<br>aataatgctcattcagttatatatcagttgtcaaattcatttggagcaaaactcttcagacagacaatagtcttgagattttgaaatctctgaacaccat<br>ttctacttcagtaaaagtacagaaaattgtacgaattagtgcaagcaaagctctttttggaggaaataaatctttatttattttta<font color="green"><u>AAAACTGAACACAT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAACTGAACACAT</u></font>atcaaaggagaatggcttacagttattgagatttaagttatagcatctgctaaatactgactatttttctcacataaaagt<br>cctttctcagtcctttggctttagtactctaagagcactctgaggaactttattcatgttgatatattttgagttactcaaacattaaagttcagaaaat<br>ggagaagttaatttcagtaaaatacactgcttcaggggggaatcttcaatctctttcctgtgggccagtttttatggaagcacagggcttttcttctatc<br>gccctgtgtattttaaattatttctagtatttctatggtggataccataaactgtttggttaataataaccatagcttgaagtcttattccttgaaatgt<br>gtatc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CCDC102B:NM:001093729:2/10	
0	chr18	64723481	64723482	1001795	0	-	1104685563794	NA	NA	SINE	Alu	AluYb8	gagttactgcatcacgcttgctttgtttccttatagggtgatgaaagtgctttggaattaaatagacagggcggtcccataacattgtgaatctactaaa<br>taccactaaatgttcactttaaaatggttaattttatgttatgaaatttcactttaatgaaaaagagaagaaaaaagaatagtgaatggctcagatctat<br>taatctgagtttacactaatcttatgattttaactcaaacttgcattttagttttaattttaaataatctttgtaacaatagtgttttatgtccttttaa<br>ataggaaggtaaataattatttatctcattattttgtaataatatagtggattattagtagtatgctagttacatcaaacattaaaaaatat<font color="green"><u>ATAATTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGACCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGTCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAA<br>TAAATAAAAATAAAAATAAAAAAAAA</font><font color="green"><u>ATAATTTC</u></font>cagctgacattcgtaaatgtcataatttttgctacggtattttattaaatataagtgatttaaatt<br>gtcaaattttgcatctttgttttaattggatatgggttaacatatcacctgtttgatacacatgaaggagattttaaagaataatataaacttccaataa<br>tcttatatttgccttactgatagaataaaagtataagagttgaaaacaaatcaggaaacataattaaattcaaatagtaataacagaagcatcaatactt<br>aaacttatgcatttaacacacagttatgaggatgtgccaaacactatatttagtagggactgagatttaaaattcatgattttagcaaaacatagcagtg<br>aatggtataagagaatatgaaagtaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CCDC102B:NM:024781:6/8	
0	chr18	65311046	65311047	1001796	0	-	1104685563996	NA	NA	SINE	Alu	AluYa5	gtcttttaaaatattttataatcttttaaagtgctactcaaagatgaatatgaatattgtgcttctatgttgatatagagagattataaacttcacctgg<br>gaggttctggaaagatcttaatattgttggtgactgtcatacaatgacatcatcatgatgtttatatagatgtgatagctaatattttgagggcatttgc<br>tgtgacaataagtttatattttcatttaagattcttaaatataaggcaggtagtattactattctcatttgaaaaggaaaaagcacaggtagtaaatgac<br>agagctgggtttgaagctaaatactcaagaaaagaaaacgttccttttgagtatttcttacaccatccttaaaaatccaaagctat<font color="green"><u>AAAAAAGCCCACCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAAAGCCCACCA</u></font>tggtggactgggtaaagaaaatttggtacatatacaccatggaatattatgcagccatagaaaaagaatgaaaccatgtcctttgc<br>agcaacatgaatgcagttggaggtcattagtctaagtgaattaattcatgaacagaaaacaaaattctgcatgttctcagttggagctaaagatcgatta<br>cacatggacacaaaacagggaacaatggacatcagggcctatgttgaggatggagggtgaggattgaaaaactacctatcgggtactatgcttattatct<br>gaatgacaaagtaatctgtacatcaaactcccgtgacaggcaatttactcatataacaaacctgcacatctatgccctgaacctaaagtgaaggttagaa<br>	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DOK6:NM:152721:1/8	
0	chr18	55301101	55301102	1001797	0	-	1104685561068	NA	NA	SINE	Alu	AluYa5	gagtagaaaataatgatcttaaataatttttttcatcacattttaataaaaaataaagtgtaccaaaattcttagaagaccttatataacctacatgaaa<br>gttctaattatttgacaaagctgaaacttgttttaagacacagataatgtctaatttcccaaatcagtggtttgtgctcctttctccaccatgatgtgta<br>aatggtgtgttcacacaggtgacatgataggctgtaggtgacatgcagttcccagctggtagaccacgtttaactcagtttctcttcctagaaagcatgc<br>ccaaacacaaatgagcgagaatgatgttgcagtaggaatgaccttgaatcttatgtctttaatagttacaaaaaaaaatacttctt<font color="green"><u>AAAAACGGTAATTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTTTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAACGGTAATTT</u></font>acctttatagtcaaaatatcttggggtatattcttgagatttgcagatccactgtaagctggttaattctcagcttctcatatat<br>gatgatggaagtggtgaaagcaaggaatggggaaagtaatgcgagcaggagacaatgagacaaagggaacattagctccagcagaaatgccagggttgtg<br>ctattttacataaaatgtagagactttataaccatataggtccatttaaccaactgccattttttcctacagttgtcatatttattgcaactacatgcat<br>tataaaccttgtaagacaatgtatgttattatttttgctttaagaaattcagagcaagtctttgctattgtgaatagtgctgcaataaacctatgtgtgc<br>c	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CCBE1:NM:133459:2/11	
0	chr18	44777844	44777845	1001798	0	+	1104685127498	NA	NA	SINE	Alu	AluYb9	ggcaggccagggccagcaagacctgggagcctctgctgcccacgacacctacagttttagaatctggagagcagatgcctctggcttgctaagcaactca<br>tgaaacaaacagcttgcttcagggctttcttttttgaagctgactttgttgtttgggtggggagatgtgtgtatagataagcttctcaaagtgatgacat<br>cacaagaataataaaaatgccacattgcaccctgtgtctttcacctcccaggcacgttttcaaaactaatcataggtcaattccccttcttgccagctcc<br>agggacctgcagagatgggaggcgctgctgaaaaccctctaaggggggcagcgccgccttacctctcagagctgcatttccctctct<font color="green"><u>AGAAAAGGGACGA<br></u></font><font color="red">AAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AGAAAAGGGACGA</u></font>gctaggtggattttaaagttcctgccagttcccaattatttacccagaactgattttaactgagtgtttgaccaaagctttgg<br>tccatgagccttccattgccggggtgtttattttacataaaatttatctggatactcacacgtagaagtttttcttttggtatggaaaggggtcagaaga<br>ttctccaggttttgaggggccctgaagcttacacaatttgcaagagtgtctccttcaggaaaataatacagaattactgatcataattcggtgctgggtc<br>ctggtagaggcccaggctgtaatgtgtccagaggcacaaggctcagctccacactctaccctctttcgttgtgattaaaggtccacaggcgtcctgggca<br>aata	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	61638267	61638268	1001799	0	+	1104685562705	NA	NA	SINE	Alu	AluY	gcagatgacccagatcctggttactgtgagaaggtacttcctcagttaacaggatccctgagaaagctggttttgcaatattgagattcctcttgtaatg<br>gtagtccagtcaaagtgatatccaaaaaagtttatttagttttagtgagaacaatcctaaagggttgagccctcacagcgtgaatctccccagcccctgg<br>ttattaatccttgggttcatgtggttgtctaggctcctgagggtaattcgaagcctgagtatgcagaacccgtgttcctttgcttccctaaagtgcgaaa<br>gatttcagaaatggctatcgtctgttacatgaggtacatataccaaatttttaagaagattcaatagtagcagaatatgctt<font color="green"><u>AAAAAAATCATCTGAGGC<br></u></font><font color="red">CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAAAATCATCTGAGGC</u></font>tgataggatattagatcatcagatttttttcctatacttaaaaacagcttttgaacaatagcaatataagtt<br>tatattttacatgcacaatgctttttgtgaacatggattataaataaatgaaaagttctgagttatggtatcagatgatatagctatagaaaaattattc<br>acaaagcctaaaatatgagccagtgtctttttcaaagagcccatagatagattttttttttgctaagcgtaagtgacttaaacaattactgattattatt<br>aagcatgaaagtctcacggagttataggtatccaattggtcaagactagactttactagttcagtcatatgatattaacaattttctctgtgtgtgtgta<br>tttatataca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CDH7:NM:033646:4/12	
0	chr18	62035151	62035152	1001800	0	-	1104685562880	NA	NA	SINE	Alu	AluYa5	attctttatgagtctcataaatggtgtcatttttaagagcacaatttcaaaaggcacatatgagaatatagtgatatgacaaaatctgtctaggatattc<br>aaacagacacgtaaatctccaaggggctgggtagaggtcaacatttatacaatatttataatgaagagcccaagaaacatcttttcactattacatttca<br>tgttcatcactgcattacacaccatgaagctgacacttttactggctgaggcattaccacttcaaaatcaaattagaaatcaaaagcttttcttccccac<br>tttggtttgaaaaaatagtaccctataaagactatcaaatatcaaataagtatatttcaagttgtgtgctgctttttttttttctt<font color="green"><u>AGAAATTATTAAAT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AGAAATTATTAAAT</u></font>ttcagtgacataaattccctgaaaattcagtgataattagctactcttaaacttatacacacaactcttggacaaa<br>tcatcttgttatcacaaagcaaagaaatgttgttagcctaacaatactgttggtccatcaccactcattgcttaatggcagattcagccatttttactct<br>tctaagtaatgatgtatagaatgaaggaagaagtgcagaacatagcaggcactcctttttttttttttttggattttgttttaaaaataaagccccctta<br>aagccagaagacccgattgcatcttagtcagtcaactgattaaatgaatgtacatgaacgttctttgtaaggcttagggtgtaagtggtgtgtagatatg<br>ttagggggat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	47767069	47767070	1001801	0	-	1104685128321	NA	NA	SINE	Alu	AluYg6	gcatacaataaaaattgagtgaatgaattccgatgaatcaagaattgcccttggctgcttatggatttaaggtaactcaatgcttctctgccaaaactgg<br>aaaaccttgaaatgttaatgacttaggctatgatatatccataggagaaatgaatgcaaattccctgtcttggtgaaattgcacccctttaccagaggaa<br>ggtagcagaaggtgcttttctcttattaaggacaggcagtccttgggggttactgtacggtgagaggtacctgtatggctgctattctcctgctctggtg<br>tctgctatatttctttctttgtcttttttaatgcctccccaccttggctactccccacttctgagtctgatgaccagatggcatcat<font color="green"><u>AATAAAAGCAAGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGATCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAATAAATA<br>AATAAAAAAATAAAAAAA</font><font color="green"><u>AATAAAAGCAAGC</u></font>acagtttatagcagacatcagtcagaacatgggttccaatgcttctggcccaggaagtgagaccagggc<br>tctggctggaacagacatgtgaaaatttaaggttttctaagcaaatagtaagatattataaaaacacttttccactaacattttcaaaattagtgtgttc<br>aatatgaagtatattcattaacattttggacattatttttagataaggagaattaaaagaataatgatgttatgtttccaaaaatgttaaatattaagtg<br>attataagtgaactattgtctgcagagaggcaaaccaatacagtacaattgatatcaaaaggtttctgccagcacagtttgatctctgaatgttcaagta<br>aattatttttatgtttaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr19	7710025	7710026	1001802	0	-	1104685064212	NA	NA	SINE	Alu	AluYb8	gctcccagggggattggacccaattgcccttttcagctcattggtgcctttgtattgggttccttcctttccctacctgctcctcttcattcatcccatc<br>ccctgctgatgcttcttggaatctcctcccagataagctacttatatccaaatccttgtctcaagctctttagtaggggaaacccaagccaagcttatat<br>tttgataactaccaggcatggctccttttatgtgggagacaaggtcttgctctgtcacccaggctgaagtgcagtggtgcaatcatggctcactgcagcc<br>ttgacctcatgggctccagtgatcctcccacctcagcctcctgagtagctgggaccacacgtgtgcatcaccatatctagctacttt<font color="green"><u>CAAAAAATTTTTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAA</font><font color="green"><u>CAAAAAATTTTTT</u></font>tagagatggggtctcactgtgttgcccatgctgttcttgaactcccgggctcaactcatcctcctgcctcagcctcccaaagt<br>gctgagtttacaggcctgggccgctgtggcctgcctggtcatggctcttctctatcaaaatgttctcaggtattcttgtgcaatttttggatgatttttg<br>agtctactctggctttaaaggttttcatttacttgtggaataagtcacgtgtgcacacagaaccaaaacgtatcaatctctacagtgaaaactaaagctc<br>attccgtccccgttttcccatctcaagaggttactgtccccacttgtagctttgctatttattcccaactaaagagtataacctctttattatattccaa<br>ataa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr19	15788952	15788953	1001803	0	+	1104685512540	NA	NA	SINE	Alu	AluYa5	accccacccagtccttcaaaaccaccaatttgttttctggctctggctctatggacttgcctattctagacatttcatataaatgggactatatactact<br>atatataacgatgcattatgattgcccctgtgagtagccacggcactccagccattttgtcaacacaaaaatgtcgacattgccaagactgagaaacctt<br>ggtctgcataaactcacatagagttcactctaagacgctgagtgaaaaaccaagttacggaaagatatctatgggagaatcagatctgcattttaaaaac<br>acacaaaatggtttgacagtttatcaaaaagttaacatagaaattatcaaaggactcagcaatttcactcctaggtatacacc<font color="green"><u>AAAAGAATGGAAAAGGA<br></u></font><font color="red">AGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>GAATGGAAAAGGA</u></font>ttcaaacaaatccttggacatcaaatgtgcatagcagcactgttcacagtagccaaagggtattttttaatttttctgtagagagta<br>ggatttcactttgtttctcaggctgctcttggaactcctgggcttaagcgattctcctgccttgacctcccaaagtgcttggattgcaggtgtgagccac<br>tggacatggcctgatccaaacgtctatcaatggcagatccaaatgtctattaataaataaatggataaacaaagtgtggtataatcatataatggctatt<br>attcagccacagaaaggaatagcatcccagtccaggccacagtagagatgaacgttgaaaacatgtgctatgtgaaaggagctaggcttttaattt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr19	15937806	15937807	1001804	0	+	1104685512633	NA	NA	SINE	Alu	AluYd8	tgggaagatcgcttgagcctaggagttctagaatggcctgggcaacacagtgggacttcgacgctacaaaaaattaaagaattagccgaggctaggcgca<br>gtggctcacgcctgtaaccccaacactttgggaggctgaggcgggcagatcacctgagcacaggagttccaggccatcctgggcgaca<font color="green"><u>GGTGAAACCCCA<br>TCTCTACTAAAATACAAAAAATTAGCCAGGCGTGATGGTGCATGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCACGACAATCGCTTGAGCCCAGGAG<br>GCAGAGGTTGCAGTGAGCTGAGATCAAGCCACTGCACTCCAGCATGGGCTACAGAGTGAGACTCCGTCTCAAAAAAAAAAACAAGAATTAAGAATTAGCC<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAC</font><font color="green"><u>GGTGAAACCCCAT<br>CTCTACTAAAATACAAAAAATTAGCCAGGCGTGATGGTGCATGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCACGACAATCGCTTGAGCCCAGGAGG<br>CAGAGGTTGCAGTGAGCTGAGATCAAGCCACTGCACTCCAGCATGGGCTACAGAGTGAGACTCCGTCTCAAAAAAAAAAACAAGAATTAAGAATTAGCC</u></font>a<br>aacaaacaaacaagaattagcctggtgtggtggtgcatgcctgtagtcccagctactcgggaggctgaggttgggggctcacttgagcccaggagtttga<br>ggccctgattgtgccacagaactccagcctggagttcagtgacagagtgaggccctgtctcaaaaaataataaaaataaaataaaat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr19	23708906	23709306	1001805	0	-	1104685515907	NA	NA	SINE	Alu	AluYb8	cggtggctcacccctataattccagcactttgggaggctgaggcaggcggatcacgaggtcgggagatccagaccatcctggctaacacagtgaaacccc<br>gtctctactaaaaaaatacaaaaaaattagttgggcgtggtggggggcactgttagtcccagctactcaggaggctgaggcaggagaatggcgtgaaccc<br>aggaggcggagcttgcagtgagccgagatcacaccactgcactccagcctgggcaacagagggagactccatctcaaaaaaaaaaaaaaaaaaaaaaaaa<br>ctagcaagctgagttcataagcaaatcaaaaagttattttgccactatcatgtgagctttattttatgaatgcaaaaatgttcatat<font color="green"><u>ACAAGTCAATAAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AA</font><font color="green"><u>ACAAGTCAATAAG</u></font>gtgattcaccttgtaaaaatatataagcaaaaaatcataattatcacaagtgcagaaaaagcattcaagaaaatccagtattcat<br>aaaaatattatcaacaaggctgagtgcagtggctcacgcctgtaatcccaacgctttgggaggccgaggcgggtggatcatgaggtcaagagatcgagac<br>catcctggccaacatggtgaaactccttctctacaaaaaataccaaaattagctgggcgtggtggtggatgcctgcagtctcagctacttgggaggctga<br>ggcaggagactcgcttgaacccgggaggttgaagttgcagtgagccactgcactccagcctggtgactgcgagaccccgtctcaaaaaaaaaaaaaaaaa<br>ag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr19	1976055	1976056	1001806	0	+	1104685016766	NA	NA	SINE	Alu	AluYa5	ttggtgctaaaagacatggagcactggattctgagcacttgcatcctgttgttcctatagaaaggatttctgctgttaggactctaagactgtttaagaa<br>ttgatttggggtcaggtgc<font color="green"><u>GTGGCTCACGGCTGTAATGCCAGCAGTTTGGGAGGCTGAGGCAGGAGGATCACGAGGTCAGGAGATCGAGACCATCCTGGC<br>TAACACAGTGAAACCCCATCTCTACTAAAAAAATACAAAAAATTAGCCAGGCGTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGACAGG<br>AGAATTGCTTGAACTTGGGAGGCAGAGGTTGCAATGAGCCAAGATCACGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTGTCTCAAAAAAAAAAA<br></u></font><font color="red">AATTGGCCGGGCGCG</font><font color="green"><u>GTGGCTCACGGCTGTAATGCCAGCAGTTTGGGAGGCTGAGGCAGGAGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAC<br>ACAGTGAAACCCCATCTCTACTAAAAAAATACAAAAAATTAGCCAGGCGTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGACAGGAGAA<br>TTGCTTGAACTTGGGAGGCAGAGGTTGCAATGAGCCAAGATCACGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTGTCTCAAAAAAAAAAA</u></font>aaaa<br>aaaaaaaaaattgatttggggtcaggcacagtggctcatgcctgtaatcccagtgcttgggaggttgagtcgggggatcgcttgagcccagggattccag<br>accaccctggggaac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr19	2334651	2334652	1001807	0	-	1104685016930	NA	NA	SINE	Alu	AluY	acaccgcatggagcttgagtttcagacaatcaaacatccttttgtagcctaagtgtgtccctgggatggttcagtctatgcaataccttggccgggcttt<br>ggttctttggtcaaacattattctagctgttgctgtgaaggtaatttttagatacaattaacatctatttatttatttttattgttttgagatggggggg<br>tctcactctgtcccccaggctggagtgcagtggtgtgatcatagctcactgcagcctcgacctcctgggctcaagcgatcctcccacctcagcctccaga<br>gtagctggaatatggatgtgtaccactatgccagc<font color="green"><u>AAAAAATTTCTTTGTAGAGTCAGGGTGCAGTGGCTCACACCTGTAATCCCAGCACCTTGGGAGGC<br></u></font><font color="red">TGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGGGTGGT<br>AGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCA<br>CTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATTTCTTTGTAGAGTCAGGGTGCAGTGGCTCACACCTGTAATCCC<br>AGCACCTTGGGAGGC</u></font>gagataggaggatcactggagtccagagctcaagaccagcctgggtcatgtagggagaccctgcctctaagaaaattttaaaaat<br>cgtaatttttttttttagagacggggtcttgctatgttgcccaggctggtctggaactactggcttcaagccatcttcctgcctcagcctctcaaagtgc<br>tgagaaccactgcacccacccagcccaattaacttctccttttttttttttgacggaatctagctgtgtcacccaggctggagtgcagtggtgcaatctt<br>ggctcactgcaaactctgcctcccaggttcaagcaattcttgtgcctcag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr19	6874865	6874866	1001808	0	-	1104685516359	NA	NA	SINE	Alu	AluYb8	aacgtgacaagctaagtccttcttctatgccatttattcataattaattttaaaattaattttaaatgtctctgagtggtttctgtgggttaaagataag<br>ccaggcaccatcttatgagcacctctctatgatattatca<font color="green"><u>AAGAAAACTGACCATTGGCTGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTATGGG<br>AGGCTGGGGCGGGTGGATCACCTGAGCTCAGAAGCTTGAAACCAGCCTGGCCAACATGGCGAAATCCTATCTCTACTAAACAAACAAACAAAAAATATTA<br>GCCAGGCATGGTGGCGGGCACCTGTAATCCCAGCTACATGGGAGGCTGAGGCAGGAGAATTGGTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCTGAGAT<br></u></font><font color="red">TGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAACTGACCATTGGCTGGGCG<br>CAGTGGCTCATGCCTGTAATCCCAGCACTTATGGGAGGCTGGGGCGGGTGGATCACCTGAGCTCAGAAGCTTGAAACCAGCCTGGCCAACATGGCGAAAT<br>CCTATCTCTACTAAACAAACAAACAAAAAATATTAGCCAGGCATGGTGGCGGGCACCTGTAATCCCAGCTACATGGGAGGCTGAGGCAGGAGAATTGGTT<br>GAACCTGGGAGGCAGAGGTTGCAGTGAGCTGAGAT</u></font>acacctctgcactccagcctgggcaacaagagtgaaactcagtctagaaaaaagaaaaagaaaaa<br>gaaagaaaaaaactggccaatttctagttgtgtgattttgggcaagacacttaactgctctgtgccctcagtttc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:EMR1:NM:001974:14/21	
0	chr19	58001662	58001663	1001809	0	-	1104685710526	NA	NA	SINE	Alu	AluY	aaaagtttaaatcctcacatctctgaaaagatatctttctttgcccccgcttatctctctgctctttctttctattctttctttctctctttttttatga<br>cagcgtctcactctgttgcccaggctacagtgcactggtacgatcttggctaactgcagcctctgcctcctgggctcaaaggatgcttatgccccagatt<br>cctgagtagctggaactgcaggcgctcaccaccatgcccagctaatttttgtgtttttagtagagacggtgtttcaccatgttggccaggctggtttcaa<br>acttctgatctcaagtgacccacttgcctcagattcccaaaacactgggaccgtaggcatgagctgccatgcctaaccattgttattattttaaa<font color="green"><u>NNNNN<br></u></font><font color="red">TTGTCTTGTAGTTCTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAG<br>CTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACCACAGGCGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTA<br>GTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTG<br>AGCCACCGCGCCTGGCCC</font><font color="green"><u>NNNNN</u></font>tgtagttctttagatatttgggcagaggttattgttgcaggtatgttaaacatattaaagttatagcataataaaga<br>aacttaaaattaccataacctggacgtgtgcagtggctgacacctgtaatcccagcactttgagaggctgagatgggcatatcacctgaagtcaggagtt<br>caaaactagcctggttaacatgttgaaacttcgtctctactaaagttacaaaaattagccaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn<br>nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn<br>nnnnnnnnnnnnnnnnnn	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ZNF28:NM:006969:3/5	
0	chr19	36382518	36382519	1001810	0	+	1104685393921	NA	NA	SINE	Alu	AluYb8	ccagcctgatgacagagcgagactccgccaaaaaaaaaaaaaaaagaaaagaaaaaacatagtccgatggtctttgataaagtaccaaagaccataaaat<br>agtaataaataatcttttcacaaatgatgccaagacaacagaacatccacatgaccaaaaaataaaataaaataaaataaaatctagacgcagatcttac<br>attcttcccccaaatgaatttgaaaccactaaactcttagaagataccacaggagaaaatcgaaatgacctagggtttgatggtaaccctttagatataa<br>tgtcaaagggatgatccatgaaagaactaattgataagctggacttcactaaaattaaaattttctgttttgcgaaagacagtgtc<font color="green"><u>AGAGAATTAAATGA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTTTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCTGCAGTCCGGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AGAGAATTAAATGA</u></font>caactcacaggctggaagaaaatatttgcaaaagacatatctgatagaggattgttatccaaaataa<br>acaaagaactcttaaaactcaatgaaagaaaacaatgatccagctgaaaaaaatgcgccaaagaccttaacagacacctcaccaaagaagatatacagat<br>agcaaacagtctataaaaaggtgctctgttccatatgtcattagggaaatgcaaattggagcagcaattacatacctctatatacctattcgaatggcta<br>aaatgggtaacactgacaacaccaaatgctggtaagaacatgaagcaacagaaactctcactcattgctggtgggaatgcaaaatgaaacagccaatttg<br>gaagatagtttgggatttt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	26327450	26327451	1001811	0	-	1104685453731	NA	NA	SINE	Alu	AluYb8	cctgtaatcccagcactttgggaggccgaggtgggaggatcacttgagcccaggagtttgagaccagcctgggcaacctagtgagaccctgtctttacaa<br>aaaatacaaaaaactagctgggcatggtggcatgtgcctgtagtcgcagctactcaagaggctgaggtgggaggagcacccgagccaggagttcgaggct<br>gcagtgagccatgatcacgctactgtactcaagcctgggcaacagagtaagatcctgtctcaaaaaaaaacaaacaaaacactttctagaaagaaccaat<br>aattaaaacagagcagctttagcacaggaataaacgacactgatcaacaaaacaggatgtagcagttcagaagcagacccatgtatgt<font color="green"><u>AAGAATTTAGTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTTAGTG</u></font>ataataaatataacacttgagttagctgagagaaagaaattattccatgaattcactgggaaaatggc<br>taaacatttggaaaaaattttaggttcgcagctcacagcgaaagcacaaataaatgccagacagattaaatatttaaatgtatatattttaaatatatat<br>attctaactataaaagtactagaggaaaacatcggagaatataatatatacatacacacacgtgtatgtattttttagagacagggtctcgctctgttgc<br>ccaagctgtagtgcagtggtatgatcataggtcactgcaatctggaactcctgggctcaagggatcctcctgcttcagcctcctgagtagcttagactac<br>aggcacatgccaccatgcct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:HADHB:NM:000183:1/16	
0	chr2	26477187	26477188	1001812	0	-	1104685453789	NA	NA	SINE	Alu	AluYb8	agctactcgggaagctgaggcaggagaatcgcttgaatctgggaggtggatgttgcagtgagccgagatcgagccactgcactccatcctgagcaataga<br>gcaagactctgtctcaaaaaaacccaaccaaccaaccaaacaaaaactggataccatttaacagggttctgtcccattagcccgtggggaattaagggca<br>ctggatgagcagtgagaaagggtgagtactagtcctagccctgccctgccaccttgggcaagtcacaacttcttgaggagcattttctcagctgttaaat<br>gatgcaacccacagacaactgtgcggccaagacgacccgtcctttgtgagtaagaactgcccagaggcaaatggagtgggttttt<font color="green"><u>AAAATCAGTTCTTCC<br></u></font><font color="red">TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGA<br>ATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATCAGTTCTTCC</u></font>cgtttgcaagcagtagagaggtttaggaatgccaaaaccatccaacagctatagagtcta<br>acagcagctgcctggatccttgtctcacacctgcctaggtggtggtggtaggagcgggggtacttgcttctaggcttcagggccttctgccagatctctg<br>tctcctttggttgaaacctaaagtattaaactctcctaggagccatgatacagctctgaccaaaaactcgtccaggtcctggttcatgtttccactatcc<br>gtaaggacagaaacaagcatgtgtgcatgcgcatgtctatgcctgggagtgggataccatgagaaagtcagggggaatcagctgttgcacaagaggtaag<br>tgagagcaaaggtaccatacaaacc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	36857754	36857755	1001813	0	+	1104685770234	NA	NA	SINE	Alu	AluYa5	atcacttaaacctgggaggccgagggtgcagtaagctgagatggcgccactgcactccaacctaggtcacagagtgagactccatctcaaaaaaaataaa<br>atggccgggcgcagtggctcacacctgtatcccagcactttgggaggccaaggagggcagatcacgaggtcaggagatcgagaccatcctggctaacacg<br>gtgaaactccgtctctactaaaaacacaaaaaattagccaggcgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggca<br>tgaacccaggaggcggagcttgcagtgagccgagatcacgccactgcactccagcctgggcgacagagcgagactctgtctcaaaaaaattaaaa<font color="green"><u>NNNNN<br></u></font><font color="red">TTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCT<br>ACTAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAG<br>GCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATTA<br>AAATTAAAT</font><font color="green"><u>NNNNN</u></font>aataaaataagtaaaaataaagtaaattaatagttaaacaaattgtcagtattctgtttcaaatgagaaagtgcacagttgtaatt<br>tctaaatgataaaaattaatagatataactcgtacaaactaaaggtctttggggtctttgacaatttctgagagcataagaaggctgagaacctttgaga<br>gtgccttaaatttgagagcctttcaaatacatgaagctagacttcatgtctttttttatatctcatcttttccaggatatctctttaatccctccaatag<br>gtctttgctggacttggcagtacaccctctaactatgctgtagactattaataattcatacaccagggcaccccgagcagaacacagtgctgccagggta<br>gtgtgccag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:VIT:NM:053276:9/16	
0	chr2	34108896	34108897	1001814	0	-	1104685769554	NA	NA	SINE	Alu	AluYa5	ggtgcatggaagcaccccatgtttattaactaaactgattacaattatgtatttcagggtctgtctccagctgccttggcatctgttccaactctctgcc<br>ttctcctctccctcaaatctttgagttctttgggtagaggtaagtctcagcaatgccaaatcctgtattcacttttagaaactataacagcagaagcctg<br>ctgaatttcaccttgagagtgtcatagatgtttgcggcttctcaggtctgttcagcatctcttctgaagtgtcctcacttagactgcctgctaaggcttg<br>agaaagtcagcatttaatctcagcataccaccaaagggatgaaagctactccctatcattttttaaacagctaaatgattcaaatt<font color="green"><u>AGAACTGTGAATGG<br></u></font><font color="red">CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGAACTGTGAATGG</u></font>ccagccatattaacaggtgttgcagtatattaatttcaaaaaggacaaaaaggattttaaaggaacaaccttctgcaaat<br>caagtctaaaactgggtgcaatatgaagtagcctaatgcagtggttttttgtgtgttttgaagactttacatcttttttgtgggcaagagttcaaaattc<br>aggtcagaaggaatcaaggcagaaatgtcatgttaaatgaaaagagaaagaagagaaaaagaacacatttgtataaaggctggggacatgtgtccttgcc<br>tcctcaatgtagatgcccttgcaatgaacgcaaccgcatgactgttcaaagggccactgccctgttaaaatgccctgcctttgaaattctgtataattgt<br>cctaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	31413200	31413201	1001815	0	+	1104685768789	GGTAGACCCAAGGAAGACCTG	GGAGTTAGCAGGACTGGGTTC	SINE	Alu	AluYa5	gactgttggcaaagagctcgccttgcaaactgtggcagcttattgggagccatgccacccactcctctcagggaaatgggtttgggtgattgtcagcatt<br>gggagccatagtgggaaggttctgggctgtgggtaggttgctgcacagatgtgggcatctttactgcctgggagtgccacacggtctgtgtagttctcac<br>tccatagctaaagctcttggtagacccaaggaagacctgaatggggacccatatgcctccttcacccactgtgttgaggtctgcggatggtggatttgtc<br>tgcccctggggttcctctgtgccctccccacttgggaccacatgtacccactttacctataaatccaaaaagcatatcgaattt<font color="green"><u>AAAAAGAGAAAGCCCC<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTTTTTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAAGAGAAAGCCCC</u></font>acctgagtatcaggaagaacccagtcctgctaactccacacaggttgcagttgcaaaggcaattaaagccactgtacag<br>agcccacttcagcaccactcagaggctgggctggttctgagatccccaaagcggaagcaaccgtcctagcaaagtcttcttttgttaggcattgccaact<br>acaagtatcacataggtgcttcttaaagtgattccaatgactacggaattcttctactactttctgccacatacatctccaaggcagtaatcaatcaccc<br>tataatggaatcatctggtttcccaaggttgcaaagtcctcaaggacatctatgtgtccccagtatcagaatggcacatgatcatcacaggacaaatgtg<br>gttga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	540	220	NA	intron:XDH:NM:000379:35/36
0	chr2	11271158	11271159	1001816	0	+	1104685092182	NA	NA	SINE	Alu	AluYa5	aaaaagtctactgaccagtctctctacctctagtcttgtcctcctcaaatcttttctccacacagtacacagcgatctatctttaatgtacctctaataa<br>gatcatccaatttaaagcccttaagtggctagcccattactacattcaaaatttcttaatagagtattcgctatcttgcatgatctacctcatgccgagc<br>tctgtagcctcattctgaccactgaattcctcatgtccttacataacaaccacattgtgatcttcaggccaatctaacctgatgcctttttcttttttaa<br>gtttcactggaacgtagccacatccattccttcatgaatcacagcagggctgaacagttgcaagaccatataacccacagaaga<font color="green"><u>AAAATATTTATTACCA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>ATATTTATTACCA</u></font>tgcctttaaacgattaaaatttgctgactcccactctatactccagaaaacaaacaatgccttttttattttccatcttctatgtct<br>ttgctcatgctgttctccctaacttagaatgtgcctttgccctacggacctatcctgctgtcaggttagggatgcatcccatacacccaatacatatacc<br>ctgtccataagtcttatcattctatttgccatgctgtcattagaattatctttgtgctttattattacttttaaacttaactattcaactgtgacattat<br>tcaaggcaaggactgcatcctgatatttctaccacatataacacactgaatatttagctgagtaaataaataagtgaatgaaaataaaatgctaact	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ROCK2:NM:004850:17/33	
0	chr2	2518957	2518958	1001817	0	-	1104685073984	NA	NA	SINE	Alu	AluY	caccagaggaaagacgcgcttcagatgaaagagcaaaagtccgccaagtcagggacgacagaggctggctctaaaacgtcggtgcttctaaggctctggt<br>ttgattaggaatcacctgggggaggaaccaatgtaataatttctatgttaggaagtcaggcagaggcggcaaggagagcaatggagtggggctcagtggc<br>attagtctgggcaggctggaagcccgtctagtggaactagcacagcacacagacccagcccctgtctttgggcttgtcccttgctgaccagaggattttt<br>ggtcaccttgtccttgagcctgaaatttaaaagaaagatgaagtcttcccacgtgcccctcccaaactcgctcctcatcccatt<font color="green"><u>AAAAAATACCCGCTGA<br></u></font><font color="red">GACCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAAATACCCGCTGA</u></font>agggctgcgggcattccagggtgctgtgatgtgtggcagctccagagcaaggggagacagtggctcttctcttctcggaa<br>tggatggggccacccctcggtcattagcccccattctgggtaccacactcaggagatgaacatacctgagctggtgcaaggactgctctgagaggtctcc<br>acaccctgccatgagaggagagatccagggaactgagcatcctgttcctggaataaagacttctttttttggaagggtggtggggtgaaactcattgcat<br>ttaagataccaggtgggagaagaacaaaagtttttttagttcactgccctgaacccattttccagaccggaggactcttgatgctgtctgccctgcttgc<br>ttcg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	9806252	9806253	1001818	0	-	1104685091647	NA	NA	SINE	Alu	AluYb8	tgcaaacagctttacctggagtgagtcttgaaatacctcctgtaacatttcctcttctgttaagtaggaatagaaaactacttcccacgctctacgagaa<br>ttaaatgggggcaatgcatgtaaatgctcaacaaatgactaggaggagaagggaaggcccaaggcagataacctcccctctgttctttcacattcgcatc<br>tatagtttcacagggtttttttcctcctagtaaaattagatcctgacacatattcaaggaacactctgcagctgtttctccaagaacagagagcctgggg<br>atgccccaacttcagcccatcaagccccaagtgcttagtcacctgcttagcccagacatgagggatgccataaagaaaagcaaacaat<font color="green"><u>AACACACCCGTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>AAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTTCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AACACACCCGTG</u></font>caaagccatttactaaattagtaggggcagggagcatacaaccctgaaagagcgattaaaccttgcatttg<br>ctccaagcctattccttttccacatctgcatttgccaggtcatctcttcctgacagtcttatcctttttgtgccatggacccctttggtagtttggtggc<br>tgccaataatgaatcaaataaaataatacatagaattactgtcttaatctgtattctgttgctacaacagaatatcacagactgggtaatttgttttttt<br>aaagaaaggttatttagctcaccgttctggaggctgggaagtccaagaacatggcaccagcccttggcgagggcctttgtgctgcatgatgatgcatccc<br>agcaaaggacatggtga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	3696337	3696338	1001819	0	+	1104685041235	GGCAGTGACAGAACTGGATGT	ATTTTGCATTTTGTGGCGATA	SINE	Alu	AluYb8	ctcaacctcaacatgagggtgctggggagttgggctaagtcccgtgttaggacccgccatggccgcatggccccgaatctccctcgctggccccgtctct<br>gtggctcagtctctgctggctccagagcgtggcctggcctgcgcgtcagtggacgtctgttcccgcgtgggggtgttcttgtgggcgggtgggctctgct<br>gtttcccacgtctagccagggcctgccacccagggtctcaatacatgtgttttgaatggcttcaaagactattaaaagcaagttattattttcaaaatta<br>aaataatctctttcttttaaacaataaaatacaattttgcattttgtggcgatagggtttttatagctagtgatattttatttttaaatacatt<font color="green"><u>CCTTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>CCTTCT</u></font>agccatgttctaattccttccccgtttcagcgtgtttaagcaaagtctcttttttagttcaacctcattgagcagagggcacc<br>tgtcaggtacagttgacagtacatccagttctgtcactgcctgacttttgaaagtctcaaatcttagcgtcaggagcctagacggggcctcactcactcc<br>cgcagcccccaaggttgaccgagctgccctctcccttccaggaagcacggctgatgctccgaaggagggaagactgacccggtttctggacttcacccag<br>ctgatggacatggcatctgaatccgtaggaggaaaagtaagtgggtctctcatggccaaacaagggttgaaggcatccgtgctaagggcacaactcacca<br>gtgcagagaac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	508	191	NA	intron:ALLC:NM:018436:1/12
0	chr2	15437005	15437006	1001820	0	+	1104685093183	NA	NA	SINE	Alu	AluY	acgagaactcaggtcatgaacacacctttctagtgttaaataagaggggtgagctaaaataggagtacaatggggacaagagaggaattgaactcatagt<br>ctagaaatttcagccaggaagtgacttcggaggtttatcatctaatcaggtcccttgtctctctctcttttttttttttcaaaagacttatgccctggca<br>tttaggtcccttgtctctaaacaaagtgaaagctacatgaacgagacaggcattacctacgcatgctgaaaattttcagaacttgaatttataggctatc<br>acatgaatctcttccaacagaagagaaatacacagccttataatcagcaaaaatgaccatgggaaagcgcgctggagaaaaatgtt<font color="green"><u>AAGAAGCTGATGGA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGGGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAG</font><font color="green"><u>A<br>AGAAGCTGATGGA</u></font>cattcataacatagtttttctttttatattcaagcaaaaaataactgtgccccatatagtgtagtcaatctgtacctgtgataatat<br>atttggtaaagaaaagaataacaatgcagtttgtacattctgactttccccctccatcttagggaagaatatagagttattctacctggctagatccatg<br>cagctatcagtgaggttggtagaagaattgaagtactctctgctggcagccaaaaccaagtcaatactcttttcgtagctgaccctgtagtggggtttcc<br>ctttatgggctataccagctggaggattttctgaacaagcactgcagtgcatcatctgtccagccaggtggatgttttcaaggcgactagagcacagaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NBAS:NM:015909:30/52	
0	chr2	49586998	49586999	1001821	0	-	1104685773815	NA	NA	SINE	Alu	AluYb8	agaacagaagaatttgctttatagtaaatcttataaacctgttttaatgaagaaagtgagtatctgtatgggagcagattaacaaagaaatagaatagaa<br>agccaacaaagatacacacacatatgtggaaactggatctatgaaataagtggcatggcaggtaagtaggaaaaggattttggaaataattatggaccaa<br>tataatgcatagtgggaaataaaacctgatctccatttcacataatagccagaatcaatttaaagtaactggttaacctaaatatgagtcttacaatata<br>aagaaatatctttgttatttaaggcttgggaagaactttttaaattagacatgaaatacaaaacataaataaaaagtggtaagaat<font color="green"><u>AAAAGAATATTAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAGAATATTAAA</u></font>ttttttttccatacaaatacatcatttaataagtgggagtggaggagccaaagtagtaaggaggtatttacaaaa<br>cctaattacaaactgactagaattctgagtatagaaagtcttcctaaattcataagaaaaaggttagaaaaccaatttaatggtacaaaaaaagatgctg<br>tatcagcagctcacagaaaagtaaaccctactggccagtaattttatgaaaagatgacaaaatttactcatcatttttatgaaaatgaaaaccaaaatga<br>gattattattttacaaacttcaatgaaaaatgtttaatgtcccacaatagcaattactggtgaatatagagtaactaggacacttacttgcagtaggagt<br>gtaaattggta	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	66512493	66512494	1001822	0	+	1104685777770	NA	NA	SINE	Alu	AluY	gctaattgtaaaatccttatccagaatgaggtttgggcaaacaatttgtactactgtaattacattgtaaaagtgtttagtcccttgattgttcagaatt<br>aattgtataaaggcctagaagttatattaggttcacagtttaaaatggaaagactgtggggggggaggggcacttttcaaaactactgagttgattttaa<br>gtccgcaaactcaaactatctcattctttaaggaaaatttgtgtgtaggtaatttaaagtacatttttatggtaatctggcacatcatggttaaagcatg<br>cagtcgtctagtcttcctcctgctttgaagattttggttatgtttgcaaagggtgacttacctgaaccttcttttctcatctgtgc<font color="green"><u>AGAAAACAAAAGAA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTACCCGGGCAAAGTGGCGGGCGCCTGTAGTTCCCAGCTTTCTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCCAGGGGGCGGGAGCCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAACAAAAGAA</u></font>aaagattaccggaaagcaacaatacaaaataaatcctgttgtcaaatatatatatatatatata<br>ctgaccttttccaaatttgaaaacgtggccgcagagttgtggtaaatccaagccccgttacctctttgccgaagaacccctgaggctgttaaagaccaca<br>gtcctctaagcgtatttcgcaataaatttctctcagttaaattatacttacacaatttccctcgcagttcatttaaggatcataaacgtaggtgtgccct<br>gtcggtgtttggtttgacccccacctcccacccacgcatctccctcctacccccgagtcgcgcagatgcctggcgggcctgatgcggggacgatgatcac<br>acccccgcgagcagccgtcgga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	70651223	70651224	1001823	0	-	1104685778816	NA	NA	SINE	Alu	AluYa5	tccacatccttctggggatccttccactgaccaccccaagatgcctgcaaggccaagagaatccagtgagaggtatattggggtggacgggcatccatac<br>ctgcattgtgggatcagacaaaacacgctgagatggggacaaaggaagtgctatgagtgccactgagaggtctatagggcagtatcagagtccatgggtg<br>gccctgaccatgtttgaggaatcaagggggcccctgaaaaggtgaggttttggctgagcccttaaaggcaactaggagttaacaggagtcatttaaactt<br>ggaagcatggaaggttgtttgtgtgtgtgtgtgtgcgtgcttctgagaatatgagaatgcagtaagtgtgggaataattctaat<font color="green"><u>AGAATTAGAAGGAGGG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTTTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AGAATTAGAAGGAGGG</u></font>attttgattgggagcatagctggtgagtagggttgcctcaaccaagtctcatgtctagatatctcttatctt<br>cctgggacttccagagacatacccgagggcacagtactggttctgactgcccagctgaattctgcaagagccagggaactcagagatgtctcccaaattt<br>tacattgtttattatgatctcctggggtaaatcattaaacatgttccaggttcttccttatactaactacaaattccttcaaatcattcacaccaccatg<br>catgtgagaacatgtttggtgtcaagattcccgtacgtgaaagcggcaagggtagagccccgcccacaggatgcgtactcggcattcctcattctcttag<br>tcactaggttct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	75241408	75241409	1001824	0	+	1104685779790	NA	NA	SINE	Alu	AluY	tttatttgttatgcaaataaatccaaaataaattagaaaatatggtagttttggactttaaaagctattcataacatggacactgtggaacagttctgac<br>tggaaatcaaaggaatagaagctgaaataaaaaggaacttgctggggacaaaaaggcaggaataaagaatgattgagatgagaaacaattctgaaagagt<br>taaaaatacagttacaaaatcggattcagcatcagaacaggtaaattgcaaaaaagcaaattagaaatgaaagaaccagctttagaagttgctccacaat<br>gaaaaggaaaagaacaataagataaaaaataatgaggaaatagggattcctggacaggagaactaaccaatttgaacagaagtaatgatt<font color="green"><u>AAGACATAAC<br></u></font><font color="red">CAGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAC<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGACATAAC</u></font>agaaaaaaaagttccttaatgaataaaagttgggatctgcttacactaagcaaaatcaatatacgtgagagaggggatacat<br>atccagagatattctgatatattttcttatttcaatggtaaggaaagaattctaccagccatccaagaagctaaacattttgcctataaaggaaaaatat<br>caggctgggctctaatcttctattataatgccagaaaataacggagccacatttacaaaattatgacatgagaaatcttatagagtgataattgtctacc<br>taagttgtgctaaggtaacagaaagaacttctcatgaatataagagatcaggaagtatattcacaataccattcctggaaaaataaacaaaaaccaaacc<br>ccccaaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TACR1:NM:001058:1/5	
0	chr2	95852180	95852181	1001825	0	+	1104685779199	NA	NA	SINE	Alu	AluYg6	attgcttgtttttctcaggtttgtcaaagatcagatagttgtagatatgcagcgttatttctgagggctctgttctgttccattgatgtatatctctgtt<br>ttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagtgtgatgcctccagctttgttcttttggcttaggatt<br>gccttggcgatgcgggctcttttttggttccatatgaactttaaagtagttttttccaattctgtgaagaaaggcattggtagcttgatggggatggcat<br>tgaatctgtaaattaccttgggcattatggccattttcacgatattgattcttcctacccatgagcatggaatgttcttccatttgtttgtatcc<font color="green"><u>NNNNN<br></u></font><font color="red">TTTTTTTTTTTTTTTTTTTTTTTTTTGAGGCGGAGTTTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGACTCACTGCAAGCTCCGCCTCC<br>CGGGTTTACGCCATTCTCCTGCCTCAGCCTCCCGTGTAGCTGGGACTACAGGCGCGCGCCACCATGCCCGGCTAATTTTTGTATTTTTTTTTTAGTAGAG<br>ACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCAC<br>CGCGCCTGGCCTGTATCCTCTTTT</font><font color="green"><u>NNNNN</u></font>attgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttggattcctaggtatt<br>ttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgtctgttgttggtgtataggaatgcttgtgatttttgcacatt<br>gattttgtatcctgggactttgctgaagttgcttatcagcttaaggagattttgggctgagacaacggggttttctagatatacaatcacgtcatctgca<br>aacagggacaatttgacttcctcttttcctaattgaataccctttatttccttctcctgcctaattgccctggccagaacttccaacactgtgttgaata<br>ggagtggtgagagagggcatccct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	46782457	46782458	1001826	0	-	1104685773117	NA	NA	SINE	Alu	AluYa5	cttacatctaacgaaccacagagaataatgtctaatatttgctgtaccctttctatgtagtaggtaggcacagttaaacctcaccactatgctgtgaggt<br>aggtacttttaacaccctccctttacaaacgagtaaactcaggtacacagtggttaaatcacttgcctaagatcatgtgaaggggctgggatacaaatcc<br>tgtctttctctattataactatgataggaatgatgtattcataatgatcatgtaattctactctctttttaaaggtactaaacccattttaacaaaaccg<br>ccacactaactgaaaataataatgttcacataatttactttcaaaatacagaagccttctgaattttgaaaatcttttaagcaattaattttagcat<font color="green"><u>AAA<br></u></font><font color="red">GGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCT<br>CTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGCAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTGAACCCGGGAGGC<br>GGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA</u></font>attat<br>agaatgctaaactactctagggcattcatttaatattttcacctaaatgacagtttgtctctttccaatgacagggaactatcagcactaacgctaacaa<br>tgcagcatattgttttaaacttttaaataaaagctcacccagttttacaaaatttcatggataaaagtagtcaactcaaacttcttcatccttagaaggg<br>aacaaatcacaaataatccaaaaaccattaacagttggcacgagaatgctttagaaataaacagtgtgaaagtgataaagcaatctctggactggagtcc<br>acagacctgcccaccaatcctggccccaccattaaatagcaatttaatcccttcaactgctctgggccttggtttcctaatctgcaaaatat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SOCS5:NM:144949:1/2	
0	chr2	42877580	42877581	1001827	0	-	1104685772179	NA	NA	SINE	Alu	AluY	agatcttgatacttggcatgttggtgttaagatctcatgggatgtaaagacacctggtttggcaacaccccaaggagactgctatttcatgcttggtaat<br>ctttggagaaccaaaattatattgctactctagcatctaaatttagattattgggtatatattttgaatatgtcttataaagtaaacttctggagcattt<br>gatattaatagtgaaacttctttacaagaacatgtaactaggtttttcttttttgagatactactaaattttaaaaagttgcttttctttttattctaag<br>tagttgtggagttcctcaaatatgctaaacaattttcagaattattcatgaaagctattaaagcatccaagtcaacttattagtataactt<font color="green"><u>GAAAAAATG<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAAGGTGAAACCCCGT<br>CTCTACTAAAAATACAAAAAGTTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAG<br>GCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAAAA<br>AATG</u></font>ttccctgtctatatgcgtttttagtagtgagagagttttgtctagttttgaatttagttcttctcaggaacagctgacctgacaatggggcctttc<br>tctcaacttgtcatttagttctttcggaagaaatatctcagctgtggttaggctaacttaagctgtagagtttgtggggctttttttttttttcttcctg<br>ctgtaagtttttattttgtttttggactttctacttgttttccaatacgcaatgtgcaaacagtatccttttttactcaaagcttctcggggcttattct<br>ttacttggctctagttcctgattcttgggggtttacctcactcttgtctacctggagaaatctactcatatgttagttttggagcccggaagaac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	83685236	83685237	1001828	0	-	1104685781445	NA	NA	SINE	Alu	AluYa5	gaattgttacatattcttgttgaaataatcactttatcattaaataattacagtctttgcaagattttttttactgtttttgatttaatgttcattttat<br>gagatgtaagtataggtactcctgctcacttttggttcccgtttgcatggagtatattttcccatcccgttattttgaggccgtaaatgcctttaccagt<br>tagataagtttcttttatgcagtatatgcctgtgtcttgctattttaatttaatttgccagtctatatcttttaagtggaacctttcatacatttacatt<br>aaaggttaatatttatatgcgaaattttgttcctgtcataatgttaattgttacatagctgatttgcaggctcaattttataaatgtattgaaa<font color="green"><u>GTCATG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAGGAAGG</font><font color="green"><u>GTCATG</u></font>gagttttatactttcatgtttttttatgatagcatcaatcttttctatgttaggaaattttt<br>gaacatttcttgtaagttttgtctagtgatgatgaattcccttagtgtttgtctggaaaaaattttggttctacttcatttatgaaatttagtttagcag<br>gatttaaaattcttggctgaaatgtgtttttaagaagactgaaaataggaccccaatctctcttgcttgtaagatttcttttgaaaagttcatgttttgt<br>ctgatgggatttcctttataaatggatgcttctctttggctgcttttagtactttttccttcatgttgactttagatagtctgatgactatatgccatgg<br>tgacattcattttgcaatatatgttccagaag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	84443657	84443658	1001829	0	-	1104685781605	NA	NA	SINE	Alu	AluYa5	ttggctataggtatttgactttatttctggattctctattctgttctattggtctacatgactatttttatactagtaccatgctgttttggaaactata<br>accttgtagtataaagttggttaattgatgccttcagatttgttctttttgcttagtattgctttggctatgggtgcatatatgtttaggatagttaggt<br>ggtcttgttgagttgaagacattaccattatgtaatgcccttctttgtcttttttgatctttgttggtttgaagtctgttttgtctgaaattaggattgg<br>aacccctgcttttattctgatttctatttgcttggtagattttcctccatccctttattttgagcttgtgactgtcattgtgtgt<font color="green"><u>GAGATGGGTCTATTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAGATGGGTCTATTG</u></font>agaccattaggtcttgctattttatccagcttgccactctgtgcctttcaaatggggc<br>atttagcctgtttacattgaagattagtatttatatatgtagattcgaccctgtcattgtgttattagctagctattatgcaggtttgtttgtgtggttg<br>ctttatagtgtcactggtctgtgtaactaagtgtgtttgtgtattggctgataatgatttttcctttccatatttggtgctcttttcaagatctcttgta<br>aggcaggtctgctagtaacaaattccttcagcatttgtttatctgagaagaatcttatttctcccctctgaggaagcttagattgactggatataaaatt<br>cttgattgaagatttttttccttaaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	112163907	112163908	1001830	0	-	1104685404900	NA	NA	SINE	Alu	AluY	ccaagaagccccttgacagtgtgcccggctggtgagaggattctttgaatgatgtctgcacactgactttctcctaagcgtagaatcactgtcactgaca<br>aatgcagactggagctggggtgtggtgctggcaactgaaatacttggaaagcaatgctgtttgtaatcagattgtccagcctggagaacggctcgtagaa<br>aagttccaaaccaatcaaaatacagacttctcttgatgggtacaatggttgcattcctgggaaattcagtgtattttaagccatgtaaaaaacaccccgt<br>acaatgtttacatataaaatggaattaggttccaggctcaggtaattaatagatttttacccatgaggctgtcaacaaggatgttt<font color="green"><u>GAAAATCATTTGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCTGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCACCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAGAAAAAG</font><font color="green"><u>GAAAATCATTTGGG</u></font>tgtgggatgattctttgttgtcagggattgttctggatttcttactgcatctgccaaattctgtcagtgtc<br>ccttccctgtcatggtgatgacagaaaaggccctactgattttcgaagtttctctgagggggcctcctcccacccctgccctgagaaaacccacttgcat<br>gaatgaaacattttgtagagcatcagaaagcagactgtacctgccatcatctctgtttgctaaagaggtgcttctctctttcccactgagaacacctgac<br>cattgtaaaagtccagaaacttctgagggtcatccaaaattagccctttgaatcacaacatgttacaatggtttttctggacaggtaatttttttcccct<br>atattgcttgaaatg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	97948590	97948591	1001831	0	+	1104685755767	NA	NA	SINE	Alu	AluYa5	atcgcttcgtacccctcccatctaccctaagaacaaagagcttgtaaaccaataaattgggtggaggctgagagttccgggctgtgagcaagcctctgac<br>actctggtcccctggacccaccttttaaactcttattctgtctctttctaactcctttgtctccgctggactcggggtacccgccaggtggtgtggggct<br>ggtttctccaacatttttaaaacaggcactactgcatagattacctggcacataatagctaccacttactaccaagggccacgctgctaagcaccaagtg<br>gacaccaggaatgatgaatctggatggctgtgacaagccccatggctgggcaccaattcatctaatctcacaaacagcacagattactt<font color="green"><u>AGGAAATTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>ATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AGGAAA<br>TTTTT</u></font>atgaaattagggaatgtgtaatgaaaattactgctcctaaaaatctgaagaaattctcctgtgaatttagattgtgtaaaattacctactcctag<br>acaggctaacttcaaaagctattttctacctttcttttgcctgcccatggagaagtgatttaaatgtaaccctgaaattcacataaaggtagaactagat<br>ggcattagtcaattttcctagggtggcttttcctgctagagctaaaaatttgagtagaaaaagaacagtaatgcaaggataattcagtaaaagagaaagt<br>aagcaaagcctagaaacaaaaaaattgaacaaaagcaattttttaaaaaaaaacttaaattgcaaaattatcaaatttatttgctatcattttg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TMEM131:NM:015348:1/41	
0	chr2	105468002	105468003	1001832	0	-	1104685754240	NA	NA	SINE	Alu	AluYa5/8	tattaacaatatttaatcattaagacacaacataaactcagtaaaaaagggcaccagccttacgtggacatttgataaatttccacatcaaggccagatg<br>tgatggcctcatgcctgtaaagcattttgggaggctgaggtcggagggtcactttagcctaggagtttgagaccagcctgagcaatatagtaacaccctg<br>tctctataaaaagaatttttaaaattcaccaagcatgattttgtgtacctgtagtcgcagctacttgggaggctgaggtggggggatcacttgaggctgc<br>agtgagcagaaactcagcactgcactccagcctgggcaacacagtgagaccctgtctcaaaaataagagaaaaaactccagat<font color="green"><u>CCAAAGACCTGCATCTT<br></u></font><font color="red">GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACT<br>CCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CCAAAGACCTGCATCTT</u></font>cccctacacaatcaaatcccccctcaacataggcaca<br>atgctgacttccatcaccataaagtaattttgcctgttctcaaaatttatgtagagggtatctttcatgccaaacccctatgaacctcagtagggaaggc<br>tacaggttcaagaggctgacgaagagacccagagccaggaaatgagacatggggttttatcaggggcttaaacacaggggagagtccagtggcggggggc<br>caaggcaggaaaactgcaagcatctgcaaacatgtagtttataccgcattttcacttagcaccctcctcccactgacctccacctgtcaaccaccttcat<br>ttaacccaaaactcagggcctcagtcccctgtaggccaagacagga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	173230418	173230419	1001833	0	-	1104685153244	NA	NA	SINE	Alu	AluYa5/8	caggcattcctttatagcaactcagaatgcgctaagactgtacagatttccttcagcctcaacttcttatccttgaaggtaagaataatgctttccttct<br>ggcatagggagagcatctttcacatgggaatttcatctcctgcttttaagaaactgaagaaaggtcagagtgatcttcttgcacctgctattgttcaagt<br>gcctttaacttaaaatagtcaatatgccagagcaagatattttggggtatcatgcttttaactccttcagtaattgtaagaaatctatgagtccataagt<br>gtatcagattttatctgtaaattaatattaaataatacaacctgcacataataaaaaccacaaattaaaaaatataagcatcattt<font color="green"><u>AAAAGCAGTATCGA<br></u></font><font color="red">TTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGA<br>CTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGCAGTATCGA</u></font>acacttctggtttctggttcaatatgaaaagagcttggaagtcatcattc<br>tcatcctcacaacaagaaataagctgaacaaaccaaaaatcaacaattcttctgaccaggcacgggtggctcatgcctgtaattccagcactttgggagg<br>ctaaggtgtggaggtcacttgagcccaggagtttaagatcagcctaggcaacatagtgagaccccatctccatttaacaataataataaataataaaaat<br>aacaaaacaaaacaattcttcttagatccatcagagaattgaggtcacagggcaaaccacctcccagaaaatttgcaagacaggaggatgtagagaatca<br>caacttaccaagaacagaagcccagtaataaaaggc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	148366543	148366544	1001834	0	-	1104685264598	NA	NA	SINE	Alu	AluYb9	aaaaaaacaatagaaaagaaactaccatatcttgagttatggtatgatatcaaagaaaaacagtcacaccaaaaaaaaaaattattaaaatactattcct<br>ttttttctaactatgtatctgtgtatgaccagatttccttcatatgcttcaatcaaaataacatatcacaaaaactgaacggagaaacagatacaataat<br>ccagttttcttctactacaacaatcattaagagactgtaattttactaattttttgttttggaaaatatttttcataaaaacttgttctttactaacaca<br>taatggattattattgctattttaaataagttaatatttaaacattttctttaatttttgatatggtaaatattgatatatattactattt<font color="green"><u>AACTTTTTT<br></u></font><font color="red">TGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTA<br>AAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCT<br>TGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAC<br>TTTTTT</u></font>ttggggtctttaatttttaagagctctaaagaagtcctgagactaaaaagtttgagaacagtggttctacaatatactagcacagagatgtagt<br>tataagttgccagtatttgtgggcagtaatggtgccatggacttcctctcaactgtggaagaaattatagcatgaactgacagtgcaaactatgttctgg<br>taactccatctcaaccgtgtataaaagaatgggcccagcacggtggctcacatctgtaatgccagcactttgggaagccgaggcaggcggatcatgaggt<br>caggagtttgagaccagcctggccaacatggtgaaaccccttctctgttaaaaatacaaaaattagctgggcatagtggcgcgcacctgtaatccca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ACVR2A:NM:001616:1/11	
0	chr2	153868931	153868932	1001835	0	-	1104685030615	NA	NA	SINE	Alu	AluYa5	attggtggttctagtccccatgaggctgctgtgagggagtcctatttatacccacccagtggggtctcagtttaagcatcaattttcaatgaattggaga<br>atacttgagtaacttcttccttctcttatttgtcctagcacctcaggctcaaattttatcctgttccttgatggtcaatcaattttatttctttgttgcc<br>tcaatccaattaagttcatctataggtggaatctgcaggctcagcagagaagcagcatccaatccttactaatttctacaaattgccctcatgtgaagct<br>gacttaggcatttttgaatatctacttcccattctattgacccttggtaaatggtgtgccatagttatttgtctagtctggactc<font color="green"><u>AAAAACAGAACAGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAACAGAACAGTG</u></font>tctcttgctcacatttactaatggtggtggcatctgataatgagtaatggtccagtctaccttaccaaccatataga<br>cagtgagccagtcccccaccaccccagtgcatgcccagagaccccagtctccaacttgaatccacacaaatcttatgttggacctggcaggttcttctga<br>gaatagtagtttctgaaatggctgctggcattgtactcaccggcaatgtctgaagattctggcctttataagcaatttcaaactgtcttgatcacaattc<br>ctacaaaagcagcaaatctcttggggtatctagtctcaggggtgttagaaagaggctgtgaattcctctatctatccccacccctgccaaaaaaaatctt<br>gacaaaat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	154460841	154460842	1001836	0	-	1104685030717	NA	NA	SINE	Alu	AluYa5	tatgtatatacaatttacatcttcatatatatttaatatttatatattcagattaaatgaaagatatatttattcataatttacatattgatatatacct<br>attaaatatataaaatacaggagaatgagaacaaatgtaaaatcaactttagagttttaaaataaatcacacaaacaacattatattatagtcagaaaat<br>taagcaatgtaaagttaaataataaaatggtaatcaaaaaataagtgaaagtagtcaggacttaaagaaaaaagacaaaaggttatcagtctttaaagat<br>tagcaatataagtggtttttccttatacaattagttttctaaatcgaaagtggcaagttttttttaatttaggaaaaaacataaaa<font color="green"><u>ATATAAAATCATCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>TAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAATATATATATA</font><font color="green"><u>ATATAAAATCATCC</u></font>taattccagaaacaactatcctgttcttactcgcagactattatttaaataattatatcataca<br>aactattttatgattatattctctttttacttaattgtgaatttcttgtgtgacaatatctttttttatcattacactgcaagatcactgattaatatcc<br>tgttgctatggcatgccatcatttacttattttctgaatataaattatcatcaaatatttgtggcaaaaagaagttactgtgaaggtccttgtgcatata<br>tcttctgccacagcatgattgtttccttaggataaaatgcccagaactgggatttctgggtcaagtagcatgagactgttaaaacttgttaaaccatatt<br>ttatgaaactgatgtacccaac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GALNT13:NM:052917:1/13	
0	chr2	137893418	137893471	1001837	0	-	1104685267320	GACTGCTGGAGTTCAGAGTGG	AATGGGATACAAGCCCTTCAT	SINE	Alu	AluYb8 	gacaggaggcagacaaatcttaggcagacagggacaggtccccagtgaaatctgaccttcaagctgaagacagtcctgggtaaattctcggaccagattg<br>agaacctctctgactgtgtgctgtgctttccaccgatcgatccccacccttcacctattttacatatacctaccctttcctaattggttttctacactgt<br>tgtgcccacctttgagtggtgcctttgttttagcctctttttgcatactcaaaccaatcagtacacacgccccattctgaacacataaaagccctggacc<br>cagccacactgagggagagatgacctgacttcaggtggggggcaccttggcatcccatctctgcagagagctatttcatcactcagtaacattat<font color="green"><u>NNNNN<br></u></font><font color="red">GGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTC<br>CGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>ctcaggacccaccaaaagtgggggctgaga<br>gctcaattgcagtggctacaggataagcaccagagtacaagccaggcacagcctggcagactgagtagatggggtatctcctgcagcaaagctggcaaag<br>gggccaagaaaaatcctgcatcaaaaatgtggtatagctgggcatggtggttcatgcctataaacccagcactttgggaagccaacaggggtgaatcacc<br>tgaggtcaggagttcaagaccagccagggcaacatggtgaaaacccatctccagtaaaaatataaaaattagctaggtgtggtggcaggtgcttctaatc<br>ccagctacttggaaggctgaggcatgataatcacttgaacccaggagacagtggttgcagtgagc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1963	1850	NA	intron:THSD7B:NM:001080427:13/27
0	chr2	185710025	185710026	1001838	0	-	1104685650594	NA	NA	SINE	Alu	AluYa5	tgaatacctgaagaatgttgggagctaagtcagtattcgtccacatctgaagactgacaaatcatttcaagcaaaaagaagtatgtaatgtagaatgaca<br>tcatattttatgactcttttatcattatgctttctctcagggaacttctttagaaaaaccgtttccccagagtaagtatatttccatcaaacagaaccca<br>ctgaaacatgatgaggacaaaggctacacctcaatttaataaagatgcctaaatatacaagtcagacctggatattacttatgaagctgcatatatatta<br>aaacattttaagctgtggcatttaatacagctaacataaaaagtgataataaactggtttcattgataatgctaatcattttatagtt<font color="green"><u>AAAAGATTAATG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGATTAATG</u></font>gtaaaatgttaaaaatgataaaagcttcaataaataaagagtaaaagaggttaat<br>gtagtggtatagctgaaaattcaagaaaagaaggccgtaaagtggaggtttaaaatgtcttttgttttctataaaaaaaaaccacgccattaatatcaag<br>gatatatcaatctacaaggaacaaaagtgcctattattggcttttcagacaagatagagtgcttaaagaacagaattacataaaaataaactttcaattt<br>taataaatgtaaatatttttatttattttttggaaaaggaagcacagtgatctcttagaggaaacaagatggactaagtaaagtgtatattttaggaaga<br>tactgtagtgtggactgtcaatatccagtgagt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	181130171	181130172	1001839	0	+	1104685649600	NA	NA	SINE	Alu	AluYa5	atgaacaaaacctccaagaactatgggattatgtaaaaagactgaagttacgactgattggggtaccagaaagagatggagagaatgaaaccaagttgta<br>aagcacacttcaggacatcatccaggagaacttccccaacctagcaagacaggccaacattcaaattcaggaaatccagagaatcccagtaagatactcc<br>acgggaagatcaaccccaatcacataatcatcagattctcaaaggtcaaaatgaaggaaaaaaaaaatgttaaggcagccagagagaaaggacaggtcac<br>ctacaaagagaagctcattagactaacagcagatctcccagcagaaaccctacaagccagaagaaatttggggccaatatttaacattct<font color="green"><u>AAAGAAAATA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAAATA</u></font>atttccaacccagaattttatatctagccaagcaaatttcatatctagtttcata<br>accaaagaagaaataaaatcattttcagacaagcaaatgctgagggaatttttcaccaccaggcccgccttgcaagagctcctgaatgaagcactaaata<br>tggaaaggaaaaaactggtaccagccagccactgcaaaaacacactgaaatacaaagaccaatgacactgtaaagaaattgcatcaactagtatgcaaaa<br>taaccaatcagcatcatgataacaggatcaaattcacacataacaatattaaccttaaataaaaatgagctaaatgcaccaagtaaaagacagagactgg<br>cagattggatagagtcaaagctcatcagtgtgctg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	192690942	192690943	1001840	0	-	1104685652397	NA	NA	SINE	Alu	AluYa5	ctgcaaagtggttgcctgttagaaacacaatccttacagaactctcaaaaactggcagttgctgtaggtagtcaattgaagaggatcaaacacatctgtt<br>ggcatatccatctgttaccaaaaaatctctagtctaaaattcttgctaaaaaaacttccattttgattagaacatcactgagaagcttacaaaattgaga<br>ctgaaagtcattacctttatggagtaaatcataaggaaataaaaacaaatgtctctcaagtagattaattttattccaaatctattttttttttaaatta<br>atggaactgttaccagtggagggtatccagattcttggcatttggaacaaagaattaggtaaagcccacaaacaaagcaatg<font color="green"><u>AAAGAAAAGCACCGATTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAGAAAAGCACCGATTT</u></font>ttgaaacaaaagtacactccacagagtgggagtgggcttgagcaagtggttcaagagcactggttatagaatt<br>ttctggggtttaaacaccctctagaggtttcccattggttacttagtgtacaccctatgtaaatgaaatagtgatcagcaatcagaggctgaagtgatgt<br>tacaaagttatacttctatgcaaatgaagacttggcctgggaccagtctgattggttgtgagatagaaaccaatcagaggtcctttcatctgccatgcag<br>aaaagtggggggtggggaggtggaaaaagagtcacgtatggtccttttgttacttgggcatggaaagttggagttttcattttggagtttggagttctag<br>gaagctagc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TMEFF2:NM:016192:4/10	
0	chr2	235211498	235211499	1001841	0	-	1104685077174	NA	NA	SINE	Alu	AluYb8	ttggaacagggaaaatgtaatttaatgtattgctaattacagaaagtggttaattacctaaaaaataagaaaggactgtaagaggtcaagaagcaggtac<br>aaaggagcagctacttattgcaggacaaagaaagtggataacagaggaacaaaagaccaagacagccccaccccacaccaaggctgagattcagacctca<br>ctgaagagagcatggctacagcaggaacacacagcctgacatatgcaagaaacttggcagaggatggccgggcacagtggctcacgcctgtaatcccagc<br>actatgggaggctgaggcaggtggatcacgaggtcaggagattgagaccatcctggctaacatggtgaaaccccgtctctactaaaaatac<font color="green"><u>AAAAAAATA<br></u></font><font color="red">CTGAGGCAGGAAAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGAC<br>TCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAAAAATA</u></font>ccgggtgtggtggcgggcgcctgtagtcccagctactcagaaggctgaggcaggagaatggtgtgaacctgg<br>gaggcggagcttgcagtgagttgagactgcgccactgcactccagccgggtgacagagtgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaag<br>taaaaaacttcgcagaggacacaggctggtgctggtctttagaagctttagaagcagctgccattgacagaggttgtgggcaggtgggagtggctcagaa<br>gtggccactggtggagagtatggctagagagagttcctctgcaaaggtgctgggctcctgtgttagtctgttttcatgctgctaataaagacatacccaa<br>aactgggtaatttataaag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr20	4969132	4969133	1001842	0	+	1104685538953	NA	NA	SINE	Alu	AluYb9	ttgggaggctgaggcaggaggatcacttaagtccaggagtttgagagcagcctgggcaacaaagtgagaccttgtctctacaaaaaataaacaaaattag<br>ctggtggtggcacctgcctgttgtcccagctactcagggggctgaggtgggaggatggcttgagcctgggagattgaagcttcagttagccatgatcatg<br>ccactgcgctccagcctgggtgacagagagagatcctgcctcaaaaaaaaaataaaaataaaaaagaggggccgggtgtggtggctcaggcctgtaatct<br>tagcactctttgggaggctgagactggaggatcttttgagcccaggggtttgagaccagcctgggcaacatagggagaacttgtctctatt<font color="green"><u>AAAAAAAAA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAG<br>TGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGAGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAA</u></font>aatgctcatacgtg<br>gttggcaggagtgtaaatagcctcaaccaatttggaaagcaatttgccaatactagttaatataacgatctagatagtgggcaacccggattagcctttt<br>ccagatatttgcagctgggaagctctcatacatgttcacagagatacctgcaaatgttcatttcagctttttttttctcaatggcaaaaaactggaaata<br>gcctatttgtccctcaataagagaactaataaatacatctcacaatatacaatcaaaggaatactatgcagctattaaaatgagtgaacttatcaacatg<br>cataaacctttaagacataatgctgagttaaagaggcaagttgcagaaaggtacgtaaggtatgggactatttatgt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	212874682	212874683	1001843	0	-	1104685657739	NA	NA	SINE	Alu	AluYa5	aatcagcccaaatttaaatcagatgatattccaactaccccacattagctaatggttataatgagagtgtatcaaaagcaacaaggcacagtattggtca<br>agtatgtcttatatccttagtgacataggatacccctgccaatgttacccttctcaatagcgttgcatttcttgaaagtcttttatcttaaaagttgtat<br>gtggattttcaactttatgtttttattttaaaaaataagatgtgatgttatttttcaaagctcaaaactatgtttaccctataagttacatgcctcctgg<br>gccacatattcatttttaagaagcagagaattatgatgacatatggatttcaggacctctgagggaacttgcatggggggaccatt<font color="green"><u>AATATTGTATGTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AATATTGTATGTGC</u></font>aacggtaatgcctagaagtgtgtggtgtgtaatctatgaatccatatgcatcagtactgacaatattaggacctgttacaa<br>aagttactacactggagagagttccaaatttgtcatgtttaccaagatatgtccaacacctagcaggatgactggtcaaattaaatgcttaattaatatc<br>agttgattgaataaactatttcagagtcacatgatataacacagattaagacaaatttgtgagatgtattacagtgctcgtattttgttcagtgagatat<br>attggtctctaatctttaattcaattcattttaccctatttaaaattttcaggttatacattacagggaattgggatatgcctaatgaatacatgtgatg<br>cttaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ERBB4:NM:005235:1/28	
0	chr2	217889017	217889018	1001844	0	+	1104685659192	NA	NA	SINE	Alu	AluYb8	tacgcacaaaaagtccaagctccactggcagaggaacagagtggcatgacagagaaggagagaaaagaagaagcatctgaatgtcgagagaagttcagcc<br>agggacagttggagaggagttcagctggggatggttgaactccagggaaagattaccttcccactgcatcccctttccagctccccatcctgctgaagcc<br>actcccatcactcagtaaaatcctctgcatacaccacccttcaatcctttcatgtgacctgattcttcctgggcacaggacaagaaaagaattcaagatg<br>cactgggtgcaggaacccagaaaggctgtcacactgactcttcagtgagttgtttaacactgaagccatccaggaatggcaaagc<font color="green"><u>AAAAGAAAGAGCCTT<br></u></font><font color="red">TTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCT<br>ACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGG<br>AGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAGAAAGAGCCTT</u></font>gtttgtaacatatgctttctggggctccagaggtctcaggcaaaccctagatgctgccacaggctggtacgggg<br>tttgtttatgccaaatgcccaaaggtactcaccccagctgctgcacccactcacgtgtgtactcctgctcccacaaggggttggagggtggcagccgagt<br>aaacgagccacacccttgtcacaagtcccaccgaggggtcaaggaactctcctgtctcagcaggggatcagagattctgggagatactgaagaaaatgga<br>gctcactttccagacattaaggttttaatgacacttttagacatgagaaagcaggaaggacttggtgggcaagaaagtcaaaacagagatttgacaaaga<br>cccatcttttt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DIRC3:NR:026597:12/13	
0	chr2	223591129	223591130	1001845	0	+	1104685197127	NA	NA	SINE	Alu	AluYd8	caccgcatgttctcactcataggtgggaattgaacaatgagaacacttggacacaggaaggggaacaccacacactggggcctgttgtggggtgggggga<br>agggagagagatagcattaggagatatacctaatgtaaatgacaagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgc<br>acagtgtgcacatgtaccctagaacttaaattataataataaaaaaaattacttgtaaaaagaaaagaaatccctctaatatctaaacagtggttttaaa<br>acatgttgttaagaaattgatgtctgggttccactttgagaaattctactttagttggggcatgacttgggcatcaggatgtgt<font color="green"><u>CACCTGAGGAACTCTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCT<br>CTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGGC<br>GGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CACCTGAGG<br>AACTCTT</u></font>ctgatgcataggctgggttgaaaaccgctctggtgagttgaaaacatgactgcaaattatttgatacttcttccatcaaaaggtggatctaat<br>tccccttgaattaggatattaagtttggcttaatgactcctttctaatcaatagaatgcagttgaattgtccctttgagactttcaaggctggattgtaa<br>aaggcaggcaatagagcattcactcttcctgtcttgctttgtgtttctgtatctctgactctttccccatgcctttgaagctctgagcaaccacataaga<br>acaacctatgcaaaagccgccatgtgaagggattgcatagagagacagcctagaggtagagagagatgtccaaagactgccaggtattcca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	228937988	228937989	1001846	0	+	1104685497715	NA	NA	SINE	Alu	AluYa5	ttaattttaatgaagtccaatttatcaaattttttaatggatcatgcttttggtttcaaatctaaaaacacttttctaaatgtaaagtcacagagatttt<br>ctgctatgtattcttctggaacttttattgatttacattttagatttaggccaacagctatttttagttcatacttcatacaaaaattaactctaagtgc<br>attgcagtcttaaatgtaaaatataaatctgtgaaaccaaaaaagaaaaaaacataggaaaaagtgttgagtatatagagctaggcttagagttcttaga<br>gttaatgccaaaaggcatgatccgtaaaattaaaattaatgaactggatcccatcaaatttaaaactttgctctgtgaaagactctgtt<font color="green"><u>TTCATCCTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>TTCATCCTCTT</u></font>agacaagttacaaacttgaagaaaatatttgcaaatgacatccaacaaaggactagtgtatagaatatataaaatttcaatagaa<br>aaatgtccagttaataaatggtcaaatgacataaacagacatttcactaaagaggagagacagatggcaaataagcccatgaaaagaagtttcggcatca<br>ttagccatcagggaaatgcaaattaatatcacaataagatattactacacctctgtcagaatgtctaaagtaaaaaataatagatataccaaatgttggc<br>tggaattcaaagaaactggatcattcattcattgtggttgggaatgttaagatgatatagccagtctggagaacagtttatcacttttttaaaaaactaa<br>acat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	223884295	223884296	1001847	0	-	1104685197029	NA	NA	SINE	Alu	AluY	tagcctgggagacagaatgagaccctgtctcaataaatgaataaataaaatgaaatacaatagaataaaagtgttcagaagcagcttttaatattctcct<br>tagatatagccattgggattcatttatatgaatgcatatcagaaaccaggcagttggagaccaggcgtgtgctcataccttgcctattacacatgtctag<br>tgaatgaaagtttataataaaagatggatggtttaattttcctacttttagcgtatttgcaaatgtagaaaatcaaacttatttttggcaaatgcaccca<br>agggtcacattgaataataacatctaatatagactttcaagttagtgtaggtttttttttaaaatgatttcttcaaatagcagat<font color="green"><u>TGGTTTTATTTTCTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>TGGTTTTATTTTCTT</u></font>ttacagagttaaactgatatgtgatttccccctttcacaccgctgacatcttgcatccacaaaacaaaaacaatctt<br>cctttagatgtaccagtgaatttggaaaacattttttatactcacaagagggtcacgtatagcaagactaattgataaagcataacttagatgttaactc<br>attagggaacatttgcagcacatccgctgccaaggggatgcctttaggatgttggatcagagaaactattgaactctccaatttaaccaggaggcgtaat<br>agctctgggacaattcctgctttgcaaacaagatggtaacaaagaatgtattgaattttgtgaaatctgtaagaaatatccattcaagtaagcaatgttt<br>ggcaaaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	214909886	214909887	1001848	0	+	1104685658240	NA	NA	SINE	Alu	AluYb8	ttagaaccaggataactgatgcaaattttcaaacatgtatataaatataatagccagtattacaacttaaggcatttttgaatactttggagaaggctca<br>ttaaagatgatataaatgtaggaaactacactgtacacaagactattcaatattagaaatattgagccggataaaggctgaggtgagagttacagtttga<br>gttagatagctgtacagtttgggttacataaaggaatatcaaatgcatagaaatagagtgtttttattgtaagcttttacttaaagaaagtaatgtaatg<br>atatatctctacaagtaagatttaaggtaggagaaagtttttataaatattcagaaaggattaatgttagatattaattttctaacagta<font color="green"><u>AAAGACTAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAGTACAAAAAATTAGCCGGGCGGGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCGGGAGGGGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTTTAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGACTAAG</u></font>agctaggagttctctgctgttgaatgaggcttctagactacctcacttcttccaatataactgatcaaa<br>gacaagtttacagagacagaaaattgaagcaaaacagtcacttgcctgcaggtacttgacgccagtcccccatttctgaaagaacaaccttatcatactg<br>ggactccattggaacttctaagaaatcatggtgccaatcctttctgtatgaataattgctaaggttattgctgtgtccaaactaattttttctctttcgt<br>agtaaagttctctcactggaaatgggtaaaagagactacaccatttaaagaaaaaaagagaaggtttaggaagcttgttgtaaaaatactgaagtcacaa<br>acttattaagaaatccactcc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SPAG16:NM:024532:15/16	
0	chr2	220644640	220644641	1001849	0	-	1104685198018	NA	NA	SINE	Alu	AluYa5/8	gcctaactcggttctaggcttggctttctgtaaggttggttccatttcctgtgtaagctttcttagctgccactgctgcacactccacctctcccttccc<br>tcgatccctgtagcacttacagtcacagcttagcattgagttattatgtggtaacacaggctagaaactgccagaggcaagagaccatggcttattccct<br>tctcacatccgcccagtgcactcagaataaacactcagcaaatgctcctccattcccagacagaaaggctcaagactcattcacgtataccttgttgaaa<br>atcaccttttaggcccctttcacatatctgttgcaaagagcaaaaaagaattactttccgggtttcctttctcctatttcctct<font color="green"><u>CCAAGGCCATTCTTTT<br></u></font><font color="red">GCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>CCAAGGCCATTCTTTT</u></font>gtttatgtgaatttgatgtaaatttgatgcccagtaaattgatgcccagagtacctaacatttcaagagatcagcatgacatat<br>gcatagatattatgcgtcttttgtgtgttgtcattcagcaaatgtcaatggcttttcagaataatagacaatcctgagctattgccacacctgcacatgt<br>actgccaaaaaccactcagttctagaaatatgcagaaaatctccctaatgcctcaggaaatgaagggacatacaaatatggcagctctcatcatttacct<br>catcagcacttagctcaattaccatcttcaaatcaaaaagcactgaagcttccaaacctggagttcgactttaaggttcctcatcaagaaaattctccag<br>	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	226461935	226461936	1001850	0	-	1104685498487	TGTTTCATTAAAACCAAAGGCATA	TGAACATCTACAGTTCCATGAGTTT	SINE	Alu	AluYb8	ttagtagttttttttaatttacaatgatttgatagaatgatttgcatagattttaaactatcaacaccaaagcatatttccaattcaaggaaaatgtata<br>catatagaatacatattatgtgttatgtctagacatgcacacagacatttgagcttggacaaaagcaaggtcatgcctgtttaaagcgattaatctagat<br>gatgtttcattaaaaccaaaggcatatgtaacatttgtaataaaagccaaacaaacaaataaaaactttatttgcctaattacatctgagacattctact<br>ggatactgagctaatagtggtaaaaaaggcagagatggtctctgccctcatggagtttataatctagtatgaagagagagagactt<font color="green"><u>TATTGTTGCTTTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGA<br>AAAAAAAA</font><font color="green"><u>TATTGTTGCTTTTT</u></font>acaggacggattattacaaattacaggaattgctatgaaggaaagcagaatataaactcatggaactgtagatgttca<br>ttgacagagtggctttagacatcatctagtgatcaaatgtgatatttcacaaataaataatatattatttgtgatataattgtgatatagtctaaggtga<br>ttatgggatctgtccaaggtcacataactatagggggcatacatcaaataagacatagagaaaattgacagttgattatttttattgcaagaagagtttg<br>aaaatttttaattaaatttttattgacataatagatgtacataattctggggtatatggggtaatatcatactttcatataatttataaagatcaaatca<br>gtgtatat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	598	277	NA	intergenic
0	chr2	231988058	231988059	1001851	0	+	1104685015516	NA	NA	SINE	Alu	AluYb8 	gcccagcatggtggcacatccctgtaatcccagttactcgggaggctgaggcatgagaattgcttgaatccgggaggtggaggttgcagtgagccggcat<br>cacgccactgcactccagcctgggccacagagtgagactccatctcaaaaacaaaaaaaaaaaaaaaaaagaaaaagaaaatagagggtgtctgataaaa<br>atgtaccttctctagtgtgcagcacagtaaatccagcaccccagagatgtcctgcctggctccctggaacccatctgtgcacatgatgagatgtcacctc<br>tgtaattagcttaggttacatggcacaattagccttaaaatagggaaatattctgggtgagcctcatctaatcccatgagacctt<font color="green"><u>AAGCTCTCTGCTTTT<br></u></font><font color="red">CACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTAC<br>TAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAG<br>CTTGCGGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGCTCTCTGCTTTT</u></font>ctcccactggtggcagaaggagaagtcagactagaagcagaattcacatgccattgttgacctgaagactgagggacaaggtggca<br>aggaatgatagcaaattctagaagctaacagcagcccctggctggcagccagcaaggaaatgggaacttcataatgaattctgccagtaatagaaatgag<br>cttggaagaggaccctaaattccaggggagggatgcagctggacagagaacgtagccatgctgtactggtctcctgacctgtgggactgtggcaaaataa<br>atggatgttgtgttaaaaagaaaaaacctaaacactcagaaaaaaagaaaaatgttggcagtacaaagagatattgccagaaacacaaatatagtgagt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr20	22654130	22654131	1001852	0	-	1104685099282	NA	NA	SINE	Alu	AluYb8	actcattttaactgcttcttagtagggtagagtataactagcccacaactgattcagctcttctattgctgagcattgagtgttcctagcttcactgtaa<br>ctgctgcagggaatgccctagagcacaccccaatcctaatatgatgcttggtttgatgatctccttcacatgaacacaagctccttgattttagggacct<br>gcatgttgtgagtccacagttctaagcccagcacatgggccatgggagtattcagtaaggattgtgggataaaacaatgatgagcaatgaaataaaggaa<br>tggtcattaaactaattcaggtaagcaataaaaaggtgtgaatgctgttttcttatttacatagtccctggaacaggaaaaagagtaagataaaa<font color="green"><u>NNNNN<br></u></font><font color="red">GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAG<br>CGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAGATACAAGAAAAGATGGTAAACTTATGAGTATAGCTCTAACACATCATGGAGGAAAAATTACCAAA<br>TAGCCCCACCAGCTGGATTGCCAAATGAATTTAGTGATGACACAGATGTTTTAAAAATCAAATTTAAAATGACCCGGTGCAATGACTCATGCCTGTAATN<br>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN<br>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN<br>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN<br>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN<br>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG</font><font color="green"><u>NNNNN</u></font>ttccagaacttttatctgtgct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr20	33265570	33265571	1001853	0	-	1104685130910	CTGGAGGAAGGAAAAGGTCTG	GCTCAGCTTGTTCATTTGGAG	SINE	Alu	AluYa5  	ggtaaaaaaaaggcaaaggtgcagaatcctggatattgtaggctactatttgtgtaataatcggaaaaaagaatacatgtgtgtgcatgcacttgctcat<br>ttacacataaaatagggacagatacccaaggaactgataatagtgcttacttcctggagggaagcttaagtggtttgaggacagggtgggaaggcaattt<br>ttatttttatttttta<font color="green"><u>AAAAAATAGCTGGGCTTTGTGGTGTTTGCCTGTAGTTCTAGCTACTTCGGAGGCTGAGGCAAGAGAATTGCTCCAACCCAGGAG<br>GCAGAGGTTTCGGTGAGCCGAGACTGTGCCACTGCACTCCAGCCTGGGTAACAGAGCGTGACTCCATCTCAAAAAAATAAAATAAAATAATTAAAAAAAA<br></u></font><font color="red">TTTT</font><font color="green"><u>AAAAAATAGCTGGGCTTTGTGGTGTTTGCCTGTAGTTCTAGCTACTTCGGAGGCTGAGGCAAGAGAATTGCTCCAACCCAGGAGGCAGAGGTTTCG<br>GTGAGCCGAGACTGTGCCACTGCACTCCAGCCTGGGTAACAGAGCGTGACTCCATCTCAAAAAAATAAAATAAAATAATTAAAAAAAA</u></font>tgtatttttagt<br>agagacagtgtttcaccatgttgggcaggctggtctcgaactcctggcctcatgtgatccgcctgccttggcctcccaaaagtgctgggattacaggtgg<br>gagccaccatgcctggctggaaggagatttttctcactgtatacctttttgtatcttttgactttttaatcatgtggatatattatctcttcaaaaaata<br>agta	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1422	1234	NA	intergenic
0	chr20	13652161	13652162	1001854	0	-	1104685541024	NA	NA	SINE	Alu	AluY	tttagtacctggtggaagtaaaatatagtcattatctaaggatatagaccttgcttttcaaaaatatttaagatataatgaatttggcacactagtgttt<br>tcagtgtacagttcaagttctgtagttaaacaggacaaaaacattgtaaaccagatgacttgggtacatttataacatttttgctctaggcaatcccata<br>gagctaaacttatgtgccttcaaaatgtggaggaaatgagttcattgatgccagacctggcgtttggctcagattaggtgccagggtgaatgttagagat<br>cttttataattttttcttctatcttttataattttttctttgatttccttctaaattgcaaacttggtgtcaaatgagagtttt<font color="green"><u>AAAAATATCATCTAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGTTCAGGAGATCGAGACCATCCTGGATAACACAG<br>TGAAACTCCGTCTCTACTAAAAATACAAAAAAATAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCATCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAAAT<br>ATCATCTAGG</u></font>tgagcacattaatgagctgaaaatgaaatgaaatattagaaaaatctgctaattttccagtggtagctggtagaatctgagtcctagtgg<br>gcttccctttattttttgtaattttacaacattgtaaagcagcaccagaatgtggtagcctagagggagattaaccctagagggagattatccttaacag<br>actgcatttgattatgggcaagtgatgcaggaacttggtacaaaagagtaaatcactagggcgcttaccactcccatctggtcagtactgagaccacatc<br>catctgccctccagtgaactttcttagcttctctcatatgaattgctcaactaaaccctctggaggaagtttattatgggaacaagtctctgac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ESF1:NM:016649:11/14	
0	chr20	15035673	15035674	1001855	0	-	1104685541458	NA	NA	SINE	Alu	AluYb8	ttttagcaaaattaaaagagcttgacaacaaatggtagttttttttttcaactattaattggttatgtgtcagctcagcttcctagaactaaattacttt<br>ctgaaaaatagaattatatatttttgttgcttgctaagaaaatgttgcccagaaatttaaacataattcatttcatatgtgtgtttgttttcagtgtcat<br>aaagcagggagaagtttagaaaaggtagaagaggtaaactggtcatattttatggttccataaaatgctggaatgagaattcaaaccccaggaaatgttt<br>taagctgtaatacttgtttaaaaacaaaatcccaaaagccttaaatgttatgaattacagaacaatctatatacataaaggtatat<font color="green"><u>AAAGGATTGTGTGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCTACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAGGATTGTGTGT</u></font>tctgtgatgtcaaatattatatacatataaatcatacattaggggatacataatatgtgtttgtatgtgtggtgtgat<br>atttaatgcatatatactttctaaaatacaatgtgtttcatattaattttaccagtggttaaatgttcaatgctgttgctataccaaatatctatggcag<br>atcactgtaatagggcacttaatgtaattcaagagatatatttgtgcacctaacatgtatctgggcagtgctctgtcctggaaatgtgaatgggaacaaa<br>acaagatgggttctctgtagggcagcactatccagaagacatatcaacaatgcaaactcaagaaccactatctggggtgatggctgcagataccacgctg<br>ttccacgc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MACROD2:NM:080676:5/17	
0	chr20	16176651	16176652	1001856	0	+	1104685541753	NA	NA	SINE	Alu	AluYa5	attggtaagcgtcctaacctttagttaggaggctctcttcagccgagggcaattcttaggagagggactcaactgaggaccatcactagacagcattcct<br>agcacttagggaaaggagtgcctcgtcctgaaggggagatctgggaggagctcctgaatgaagagggtcctagtagggggcagtgtagtgagggagtcaa<br>agtaacattcccaaatgtgaggcttcaaactctatttacctggtaccagcagccagtgcagcctgaacactctgacctcgggagaggaactatgagctag<br>ttccatgccagctcctgaatctctcacatgggattctaagagtatcagagggtgagaataaagagtctctggaattaatactctgttgtttct<font color="green"><u>AAAAGCC<br></u></font><font color="red">CCTGGGGCCCGGGCGCGGTGGCTCACCCCTGTAATCCCACCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGCCCATCCCGGCTA<br>AAACGGTGAAACCCCGTCTTTACTAAAAATACAAAAAAATTACCCGGGCGTAGTGGCGGGCCCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAAA<br>ATGGCATGAACCCGGGAGGGGGAGCTTGCAGTGAGCCGAGATCCCCCCCCTCCCCTCCAGCCTGGGCGACAGAGCGAGACTCCTTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGCC</u></font>tggggaacttaaatgctggttgttggggtttcggttcaagaaaattctattcagatttgggttacagaa<br>actacattaatagccaagaaaagagggacatggacctcacactaaatcagttcaaggacaggaaaaaaagcagttgtttaaatgggaacactcaggggcc<br>aacaagagtgtgtttcttaaagtgtgtcaggggaaaatcaattcccaaaaagtggtaggaaattaaaagaaagtcttttaaaaaactgtaatcagagaat<br>tagtctaaggcttcttattaaagaagtcttctttttaaaggagaatcacacagaaatccagaaaatttggtacaaagaaggtgggggattctgaaacaaa<br>gaacaatgagataaatatagtagg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr21	22739222	22739223	1001857	0	+	1104685577526	TCCCCCAGCATATACATTTCA	CGCAAAAGCTTTGTTAACCTG	SINE	Alu	AluYb8	tttttgtatttttagtagagagggggtttcaccatgttggctaggctggtcttgaactcctgacctcaggtgatccgcccaccttggcctcccaaagtgc<br>tgggattataggcatgagccaccacatctggccaacaataataatattaataactattcttggtattattattattaatagtgatattcccattactttt<br>atctttctctcaaaatcgagataaaatgtgatataatggacatgcaatcacaagttttattttatttttaattataattcccccagcatatacatttcac<br>aaaactaactaaaattaattttgcctcaatatctttattttttaaataaaatgtagatgtagcctaacagatcaatgagactctgtagtctgtt<font color="green"><u>AAATAA<br></u></font><font color="red">AATAGGAGCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGG<br>CTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGA<br>GAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAATAAATAAATAAAT</font><font color="green"><u>AAATAA</u></font>ataaataggagctaactgacagaaaaagattctaattatttaatgtgcattaa<br>aaatatcaggttaacaaagcttttgcgtaatcttatgcaatacaaatgttagttttaatctttttgcatggctgtatcttgtatctgcagcatctctatt<br>tcacaatcatttccagctgtatgacagaggctggaattaaatcttctacaagtgattttcaggagtaaggatccatgagtatagctactttctgaaattc<br>gtgcgtgtatgcgagagagagagggccacaaattagttataatatcactctggtcaattatacccagcaattgtagaagaaaagatattagatttttaat<br>ttaaaagctatagacaaaataactctccacttcttattaga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	549	199	NA	intergenic
0	chr21	27143225	27143226	1001858	0	-	1104685579054	NA	NA	SINE	Alu	AluY	tctaagcccccagtttgactctcgctatgacatcttgggaaaactacttaacccttttgagtctcatttctgcatcagttacacaaagggagtcgatctg<br>gcagatcatactcctctgagttctgtgagggcatgatgtggagggaatatcaattttgagtctaaatgcaagctacaataatttttctgtctccaatatt<br>tgcaatacttctgggtatataacctgtttaaactagaagttttctaactactttctcatttgtgatcaattaaaatatccatttgtccaatattacttta<br>gaccatatgttcccaaaagtaggactaataccaaacagcttccctatttctaattagtcaatcttatggtactaaaatgtgaataa<font color="green"><u>AAAGCATTTCCCGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAACA</font><font color="green"><u>AAAGCATTTCCCGG</u></font>tatgaaatatgcacattagttgtttctctagacaatgtttacattaaaacaattctaatagctcatgtatattacca<br>gatttcctcatttcatggctacttgttgaatacttactttggtatagacgtcgtgaaaattgtgaatagaatattgtgtctataacatatgaatcagtga<br>aacaaataagaacacataaggtgtaaatagaaattgacaccttgatgcttatctctcactttaaaatgcagacaacttgttctttttttcagacagtccc<br>tctgttcatagaggacaataatgtgtttaataggtcaaactgttaattgttccaataattttatgtcaaatgttttgagttttgttctgttatctctaga<br>aataaaaat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr21	37979708	37979709	1001859	0	+	1104685007383	NA	NA	SINE	Alu	AluYa5	aacaccagtaaatatattgaaagatgcccaactacatgctagaaaacacgaatgacacccgttttcacttatcctactggcaaagatcaatgagttgttt<br>ctacccagtgtggatgaaaataggtagacaaaggcgtgcctgtctctggaggtaggattggaaatcaaatgatcctttgtaggagggcaatttggcaata<br>tctttaaaagcaaaatatgcatatcctcttttatcccatcaatctcacttctaagaatctatcctggccgggtgctgtggctcacgcctgtaatcccagc<br>actttgggaggccaaggcgggcggatcacaagttcaggagattgagaacatcctggctaacatggtgaaaccccgcctctac<font color="green"><u>AAAAATACAAAAAATTAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGCCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAATACAAAAAATTAG</u></font>ccaggcgtggcgcgtgtgcctgtagtcccagctgctggggaggctgaggcaggagaatggtgtgaacccaggatacgg<br>agcttgcagtgagccgagattgcgccactgcactccagcctgggcgacagagtgagactctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaat<br>ctatcctatggatatcagaggtttactgcactgttatttgtaacaaaaaaagtagaaagctgtctataatattctctagagcactagttatagaaatgat<br>cgtatgtccatcaaataaagtattattttgcaatttaaaaagaacaagttaatgtgttaataaagatttgtggtatatgttaaattaataaagagcagtt<br>gacc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:KCNJ6:NM:002240:3/4	
0	chr22	25283732	25283748	1001860	0	+	1104685553540	NA	NA	SINE	Alu	AluY	ctgtaaaatgggcccaataattcttactagcgatgctgctgtgaggattaagtgagataggggcttaataagggaaagaccagaggggtgtggctaatgc<br>cttgcagctcttcaataactgtgagtcccatctgaatctaccgatgagaaatcagcagtggtgagcaggaaaagtggggaaaggagattggcaagctcta<br>gactgtgccaggctttgaatgccaggtaaggagcttggagttatcctggggacggtgggaaattgtgagcattggtctggttgtgacctgggaggggaca<br>caggctctctctggtgtaggatgcctgaaaagacaagggctggaggccaagtgatagctgctgggggacccagggagccatctcaaagaagagag<font color="green"><u>NNNNN<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTACCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTTTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAGAAGAGAGATGGGG</font><font color="green"><u>NNNNN</u></font>cgtggtggcccatgtctgtaatctcagcacttcaggaggccgaggagggaggattgcttgagctctggagtt<br>caagaccagcctgggcaatgtagtaaagctccatctctacaaaaaaattaaaaattagccgggtgtggtggcatgctcctgtagtcccaactacttggga<br>ggctgaggccagaggatcacttgagcccaggaggtcaagactgcagtgagctgtgatcacaccactgtactctggcctggttgacagagggagactccgt<br>ctcaaaaaaatatatattttatataaaatttatatatatatattatataaaaattattatataaaaatatatataatacacacacacacacacacacaca<br>cacacatatatatatgtcgccca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TPST2:NM:001008566:1/7	
0	chr22	31858513	31858514	1001861	0	+	1104685555475	NA	NA	SINE	Alu	AluYg6	ggagacacagccaaaccatatcaaccttcataactatttatttgtgtatttacttatttatttatttatttttttgagacaggatctcactctgtcaccc<br>aggctggattgcagtggcacaatcacagcttattgcagcctcgacctttctggcgcaagggatcctcccccctcagcctcccaagtggctggggctacag<br>gcgtgcaccaccatgcctcgctaatttttgtgttttttgtagagacggggtttcaccatgttgccaggctggtctggaactcctgggctcaagaaattct<br>cccacctaggcttcccaaagtgctggaattacaggcatgagccactgcttctggcctccataactatttaaatataatgttgaat<font color="green"><u>AAAAGTCATTATTAG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGAAGATCGAGACCATCCTGGCTGACAGG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAGTCATTATTAG</u></font>tatttttgtacttaaaaatttaatttggaagctcaagtttttatgaagcaaaagagtttttacttttgatttatcagcct<br>aataactcctcatgtatgatagaacacacagcacttgaattaaaatttattacagggagtctggttgtctaagattttttctggcctttcagcaaccaca<br>gattctttggtccttccttgatgtgtccaccctcctcaagtagcaaatcatttgcttcttttattcctccttgattctcaccacatcacttccagactgc<br>cctgggaaaatgaaattcttcatctattatcgtgcatgtaacatacacttttaagacgataatttattgtttcccgtcttatactttcttttttaggctc<br>tggtt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr21	43259111	43259112	1001862	0	+	1104685027451	NA	NA	SINE	Alu	AluYb8	aggagttcaagaccaacctgggcaacatgatgaaatcgtgtctctacaaaaaaatacaaaaattagctgggcatggtggcacacatctgcagtcccagct<br>actcttgaggctaaggtgggagggtcacctgaatgcagggaggatgaggctgcagtgagcagagatcctgccactgcactgcagtctgggcaacaaagtg<br>agaccctgtctcaaaaaagaaaaaaaaatctaatttcaattaaaataaaattaaaaaga<font color="green"><u>TTTTTGCATTTTTTGTAGAGATGGGGTTTCACCATGTTGAC<br>CAGGCTGGTCTTGAACTCCTGACCTCAAATAATCCACCTGCCTCAGCTTCCCAAACTGCTGGGATTACAGGCATGAGCCATCGAAACTGGCCTTCTTTTT<br></u></font><font color="red">ATTTGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGACTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGTTTGCAGTGAGCCG<br>AGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>TTTTTGCATTTTTTGTAGAGATGGGGT<br>TTCACCATGTTGACCAGGCTGGTCTTGAACTCCTGACCTCAAATAATCCACCTGCCTCAGCTTCCCAAACTGCTGGGATTACAGGCATGAGCCATCGAAA<br>CTGGCCTTCTTTTT</u></font>tagcccattggtagtggcatatgcctgtaatcccaggtactcgggaggctgaggcaggagaatcatttgagcttgggaggcagagg<br>ttgcagtgagctgagatcatgccactgcactccattctgggtgacagagtgagaccctgtttcaaaaaaaaaaagaaaattatagctttgaagaattggc<br>ttttcttccccccgagacggagtcttgctttgtcgcccaggctggagggcagtggtgcgatctcggctcactg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr21	43322922	43322923	1001863	0	-	1104685027393	NA	NA	SINE	Alu	AluYa5 	ttactcaattgggtgctgtttgcttgtttgacctaaagttaaaataaaacacctatatatgtttagggaatgttcaacaggg<font color="green"><u>TTTTTTTTTTTTTTTTTT<br>TTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAATGGCGCAATCTCGGCTCACTGAAACCTCTGCCTACCAGGTTCCCGCCATTCTCCTGCC<br>TCAGCCTCCCGAGTAGCTCGGAGTAGCTACAGGTGCCTGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTCACCA<br>GGATGGTCTTGATCTCCTGACCTCGTTATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCTACCGCGCCCGGCCCAGAAACAGTTT<br></u></font><font color="red">AAAAAAAAA</font><font color="green"><u>TTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAATGGCGCAATCTCGGCTCACTGAAACCTCTGC<br>CTACCAGGTTCCCGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTCGGAGTAGCTACAGGTGCCTGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGT<br>AGAGACGGGGTTTCACCGTGTTCACCAGGATGGTCTTGATCTCCTGACCTCGTTATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAG<br>CTACCGCGCCCGGCCCAGAAACAGTTT</u></font>aaaaaaacaaagcaaacaaataaaaaaaaataaaaacacatgcacacaaaaccatccaaaatatgaagacctc<br>atgcgaaca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PKNOX1:NM:004571:10/11	
0	chr22	16085309	16085310	1001864	0	-	1104685013467	NA	NA	SINE	Alu	AluYb8 	tccctcttcttgactgtggatataagttgctgatgtttgggagactaataggggagaaaggcttggaagactcagtgttcaatatgcaaaatttaaaaaa<br>agtcttcatttttagtatgataaccccatccttaactaggccagaaactctgttttacctttccctgaaaacaaatcttcactgctctgctgaagaggga<br>gtgggaggaatgtctgtggctctaggtttttgttaaaaaggctttccagccattcctccatttctcctgctttggacttaccttcagcctcactttcaca<br>ggtatccgaggtttctttcgtcactgctggtttcagattcagtgtttgttttttttgtttgtttgtttgtttttttgtcttc<font color="green"><u>AACAAGTGCTAATAATTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCTGGGCGCGGTGGCCGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AACAAGTGCTAATAATTT</u></font>tatgtaccttccatcttccaagtttttttttgctattttctcctttcttgctttcttcaaccttgtg<br>aatatatgcttaatttttttccccactgtcattttagtgcaggttttggagaggaactaaggttaattcatgtgttcagcctgcaatctctaattgagaa<br>tccatccatgcacttgtgaatatgccccaactcatagagcaattgaaggggctctcactggtactgttggagtatcttgttcttcagtccctagaccaca<br>agaagtaaagcattagagggagaggattgctggaatttagacctacccagaatgacaagtgaactgcataggaagggacagaaaaattatataaaaatac<br>atacaagcagagcag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr22	17741461	17741462	1001865	0	-	1104685036367	NA	NA	SINE	Alu	AluYa5/8 	nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn<br>nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn<br>tggtctcaaactcctggacctcaggtgatccacccgcctcagcctcctaaagtgctgggattacaggcgtgagccaccgcgcgcggtctccatgcttcta<br>aatactttgaaatgctggattaaatgcaaccctcgtccctaaaatgaataactagttcacaggaaagagcagtacccagagtctaaaatctaaga<font color="green"><u>NNNNN<br></u></font><font color="red">CAAAAAAGCCAGAGCACAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGA<br>GACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>agccagagcagtgagcagaactgcaccatgggtgcaaggctaggggtcttgactgaggaccttgagtt<br>ttaatgaccacatcgacttgagacaaggcctggggtctaagccatgtaggagttggaattaagtcaccagcataaagtcaagctgcttaaaaaaggactg<br>aggcagacctgggaaaacccaactgacagcacaagaactagcagagaagttggaatgtctcagcctgtttttgggttgggataacagtcttcccttgaga<br>ctgtgtaaccacaggtctgccctcatgtggattcagggccagtttaatactacttgtgttgtatagaaatcgccaagccgagaaatgaacacaaacgaaa<br>tcctggtctaattgacgttcagaggca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:HIRA:NM:003325:15/25	
0	chr3	6370834	6370835	1001866	0	-	1104685146931	NA	NA	SINE	Alu	AluYb8	gcctgtgctcctgatgcaaagacagtaaaaatgttgttttaagccactaaatgatcaaatacagactacagataatatatataatcacattaatactttc<br>ataggaatataatttgtatataattatttagcggactacatttaaaaaaaatttgaaggcctctttgttgttagatcgaggggatgttggggcatcttta<br>gaaccataagacagagtgcctgacacataccagctgcttatcatgtttaaggagatagtttcttaaaacttttttcccgaagcttgaaacttcactaaat<br>gtgtaagatacattctcaaagaattagctgtatatacaactaaacttgccggagcattatcagctttaagaagatagaatagtaga<font color="green"><u>GATCTCAAACTCTT<br></u></font><font color="red">CCTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTA<br>GCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCCTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGAT<br>TGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>GATCTCAAACTCTT</u></font>aagtcagacggataggagtctcagttactctttttttgaatctgcttccacatctgctaaatgatagtattttaataattacc<br>tcattgggttttggggaggattaagtgagatgaagaataacattgtgtcttgcacaaaagaaatatctaaatgctaacaattattactgagattttaaag<br>aagtttaatatacatgatctcagttattaaaaaaatcatttgacattgttttatctgattttattttataaacaaagagcaattaggttgctcatccact<br>ggcacaaggctagccatagccatgttgcctgagaatcactttagagttgaactggtttagttaaatgagataatgaataaatagggcttacctggcccct<br>ggt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	7105383	7105384	1001867	0	-	1104685146832	NA	NA	SINE	Alu	AluYb8	cagagagattaaaacaaaagtaatgggaagtgtccagaccttttgttgttgctgtttggtaatcgacatttgctttttgttggaggaaactgggcttttc<br>tcttctcagcttgagcaataacaaattgggaactgaagagagctctgtttttaagaggacagctgtatgtataccctcacaggatgtcctctttgccaga<br>gtagtcagtttagactatttagaaaagttctaactaaattcttcttacaaattcctgtgtcatgctttatgcgttcctccacatagtagttgtgaatcct<br>taaatctttgggtcaagaggtggagggcactgtcacacaagcctcttacccctgccgttccaactcgcgccactggtgcttcgatgaa<font color="green"><u>CACTGATTTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGTTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>CACTGATTTCTT</u></font>aacctccaatgtccttgtggcttcagataattttagaggtagaaagaatgaacaaaaggattcattcaacgatccatgtttg<br>tttttaaagtggagaggttgtaaccaagtgtttcctgaggccacacatttagatgatctctggcccctatctctcaaccctggcactgcaaatgtagcca<br>ttttaaaagaaaaaaaaaatttagataatatcccatctagagtcaatacactatttttgtcatttaaaaattccacttacaacccaaattcttcacttca<br>taagctattttagattcttgcttacagatgttttgattggaagattctcttagttcctccttcaaggcatatttgagttcattgcccctttttacaatca<br>gtttca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GRM7:NM:181874:1/11	
0	chr3	7589534	7589587	1001868	0	+	1104685146708	NA	NA	SINE	Alu	AluY	ggatcccctggggctttgcagtgaaatacagttctggatccttctatggatgcccagggtctactgcagttaaaaaaattctaataatgctggctgggca<br>cagtggctcacgcctgtaatcccagcgctttgggaggctgaagcgggcggatcacaaggtcaggagatcgagattatcctggctaacaccgtgaaacccc<br>atctctacaaaaaaaatacaaaaaaattagccaggcatgggggcgggtgcctgtagtcctagctactcaggaggctgaggcaggagaatggtgtgaacct<br>ggaaggcggagcttgcagtgagccgagattgtgccactgcaccccagcctgggtgacagagtgagactctatctcaaaaaaaaatatatatatat<font color="green"><u>NNNNN<br></u></font><font color="red">AATAATCTTTCTACCTATAATAATTCTTTCTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGG<br>TCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCACCTGTAATCCCAG<br>CTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCAGAGATCGCGCCACTGCACTCCAGCCTGGGCAAAAGAGC<br>GAGGCTCTGTCTCGTCTGCCATGAATGTAAGAAAATAAACAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>tctttctatctggagtacatttaaaaaaggttgacttttata<br>agttttgaataagtggaatctgaattggcaatgttttttattgtaatatagtccctaaattctgttcgctgtctagtcatgctacttaatgttcagaaat<br>agaggctgagtttaaaaatgtcttgaggtgttgcagaattccttaccaagcactcgctagctcctctacctcacccctcctcatcagaaccaaaacctgg<br>cgctttcctagtattgaaaattcaacatacctatgaattcttcctaaaaagccttttttttctatcaattagataggacaaatgtattttaatgaacaaa<br>tggcattttaataaaaaagttcttttttttaaattagctgattctattaaggt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GRM7:NM:181874:7/11	
0	chr3	12112072	12112073	1001869	0	-	1104685218246	NA	NA	SINE	Alu	AluY	agtagggggaaagaagaaggaatggtcaactttgttgaatgatggcgacagaacaagttcaatgaagatagagaaatacccaccaaatctgtccaactgg<br>gggatgatggtcctt<font color="green"><u>GTAATCCTAGCACATTGGGAGGCCGAGGCAGGTGGATCACAAGGTCAGGAGATCATCGAGACCATCCTGGCTAACACAGTGAAAC<br>CTCGTCTCTACTAAAAAATACAAAAAATTAGCTGGGCATGGTGGCGGGCACCTGTAGTCCTAGCTACTCGGGAGACTGAGGCAGGAGAATGGTGTGAACC<br>CGGGAGTCAGAGCTTTCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAAAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA<br></u></font><font color="red">CAGGCGTAAGCCACCGTGCCCGGCCAATG</font><font color="green"><u>GTAATCCTAGCACATTGGGAGGCCGAGGCAGGTGGATCACAAGGTCAGGAGATCATCGAGACCATCCTGGC<br>TAACACAGTGAAACCTCGTCTCTACTAAAAAATACAAAAAATTAGCTGGGCATGGTGGCGGGCACCTGTAGTCCTAGCTACTCGGGAGACTGAGGCAGGA<br>GAATGGTGTGAACCCGGGAGTCAGAGCTTTCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAAAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAA</u></font>aggctttagtcactgctcccagcctgacggtcctttaaaaaagagctattttagtgtaattgaggggaatggtacggaagccagac<br>tgtagtgagctgaagagtaagtggaaggt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SYN2:NM:133625:2/14	
0	chr22	48659385	48659461	1001870	0	-	1104685299623	NA	NA	SINE	Alu	AluYb8	cggactgaacagtgggcttcacaacaacggccgctcttttaagccgtgttaggagccacccgaacacagcttaaaacgccagcctcaagaggaggaaacg<br>gtctatgattaactttactacaacctaaaacaagtctcaacagcatttaaaggaatataacaaaatcctgcacccaataaagtaaaatacaaaatggctg<br>acaaaaacaaccagacctgcgatgaagcgggagaaaaccacctctgaccaggagaaaaaccaaccaatagaaacaggcccagacactgaccaggagaaaa<br>accaaccaatagaaacaggcccagacactgaccaggagaaaaaccaaccaatagaaacacgcccagacactgaccaggagaaaaaccaaccaata<font color="green"><u>NNNNN<br></u></font><font color="red">AGGCCCAGACCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACA<br>AGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>caggcccagacactgaccaggagaaaaaccaaccaatagaaacacgcccagacactgaccaggagaaaaaccaacca<br>atagaaacacgcccagacactgaccaggagaaaaaccaaccaatagaaacacgcccagacactgaccaggagaaaaaccaaccaataaaaacaggcccgg<br>acataagacaaataataaaattagcggacaaggacatgaaaacagctattgtaagagcggatatagtggtgtgtgcctgggcaacatggcaaaacatcgt<br>ctctgcaaaaaaatacaaaaattaggctgggtttggtggctcacacctgtaatcgcagcacttcgggaggctgaggcagacggatcaaccgagctcagga<br>ggttgagaccagcttggc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ZBED4:NM:014838:1/2	
0	chr3	4180092	4180151	1001871	0	+	1104685147608	NA	NA	SINE	Alu	AluYa5	aaaatgtaaagttcttatttagcccaactgaaggaagaaaaatgcccagtatggatcaaaaatgtacaaatgtctgatgtaaagtcattgggtgttgaac<br>taagcagcagcctgaaaaaaaaaatcactgtctactgctacacctaggaaatgtagcctccactcttctcccggtagactgctagggtttccgggtcact<br>gcactttgcctattgaagagaagagaaacaaaaacactccaacaaccaattatctctccttgtttttattgtaccaaagcagacttaatctccttgcccc<br>tttttaaccttccttttcatgcagatgagagagagagagagacagagagagagagaaaggaaggaaggaaggaagggagggagggagggagggag<font color="green"><u>NNNNN<br></u></font><font color="red">ATGGGAATTTATAAAGACTTTATAAAGATGTAAGAAAATCTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCG<br>GATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCT<br>GTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGG<br>GCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>atctctccaatgtatctctcaaagacctattacaggatctttcttc<br>tatctctttgttgatattctggttttcttgtactgacatccaggatactgtccttggacccactttctcagacatttctgtaaaggaacagtcttccagc<br>tcctttgtatgagaggaaattgaagcctatgaaaggtaagtgccatgctcaaggtctagagtgagtggggcagagttaaaacaacatctgggtttcctaa<br>ctgccactccctgttctttcaattttaccagtccacatcataaagggagatcaagatgtattgttaggtttgaacctgtttcttaatttccaacatcagt<br>cttctaatagacagccatcatcttatatttttctatgaattaccttgga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	100209466	100209467	1001872	0	+	1104685642356	NA	NA	SINE	Alu	AluY	agaggtgtgcctaggcatggagctgggaaacctcctccctggccccaagttatctgcatggggaggggagtcagcctaaactcctaatgtaagagagtgg<br>agctccagatgcctggagatttgcctgagcatggagcaaagaggaccccacttcaccacagtcctgtataggaaggactggctgggtcaggctgcttatt<br>caggtgatcaggtgctccaaatgtctagtgatctgcctgggtgtagacaggagagaacccaccctacaccaggatctttttattagccagatgctgtcac<br>aggggctgtttgcccatgttctcatgcccaggattttggatgtccttcacaattctggtggattccaattttccttcttgaattaaaa<font color="green"><u>CATCTCTGTGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATAAAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGAGAGGCTGAGGCAGGAGAATGGCGTGAACCCGG<br>GAGGCGGAGCTTGCAGTGAGCCGAGACTGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAACAAAACAAAACAAAAAAAAAC<br>C</font><font color="green"><u>CATCTCTGTGAG</u></font>tctttatgtactgtcttgctatttacaagtgtctgaggcatgctaaaagcttctaatctgtcatctttgaaaaaaactttatttaca<br>aaacttggtgccaacctgcaggctgcagtttgtcaactcctgatatatgctataatgttctggcagtaatccaccttggaaacctctaggagaatgagaa<br>ggaagatttttctattagtatccctctcttctctgttcccctactcacccttcaaaaggcacttgactttttcttgccatcctctagcataatcttcagt<br>aagtctagtgtttgaaaatgagatacaggagggaagttgttatgaaattttgctttggtcctataaatgtccctgaataaaagaacaagaagactaatga<br>c	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	101138089	101138090	1001873	0	-	1104685642147	NA	NA	SINE	Alu	AluYa5	atagtagggcttcatttcataaatgtttgttgaataaattaatgttaaaccaggatttttcctttactatgtatatctttttataaaagctaagtagata<br>cagcatagtgatttagtaggctctggagccagactgcctaaattagggcctgactctgactctgccactttttagcagtgtgacctttggcaagtgattt<br>aaaaaggcttcaagcgggctgggcgcaggtggctcatgcctgtaatccctgcattttgggaggccgaggcaggcagatcacaaggtcaagatcaagacca<br>tcctggccaacactgtgaaattccacctctag<font color="green"><u>GCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCGCACCACCACACCCAGCTAATTTTTGTATTTTT<br></u></font><font color="red">CGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGG<br>GCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCA<br>GCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCGCACCA<br>CCACACCCAGCTAATTTTTGTATTTTT</u></font>aggagaattgcttgaacccaggaggtggaggttgcagtgagccgagatcgtgccactgcactctagcctgggc<br>gacagtgtgagatgctgtcacaaaaaaaaaaaaaaaaaaaaaaaggcttcaagcttcagttccttcctctgcaaaataaatgagttaatcaaaggaaggc<br>atttagaatgggcttgtatatgataagtaatgaatacatgttagctaccattattactattattttctttctctaaattggagtagttttgcttggctac<br>ctcgataccatattaaatgaccaagaccaaaaatgatttcttttttgaggcttttcact	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FILIP1L:NM:182909:1/6	
0	chr3	107771892	107771893	1001874	0	+	1104685640516	NA	NA	SINE	Alu	AluYb8	taaagagacaatactggctagtctgtaaaaggtagactggtggaggtaaaaataaaggcaagaagatagggtgctcctaccacaggttggagagaggtaa<br>tagtgattcgatgaacagtgtttaatgtttgtgacatatctttggagataaataaggtttattcatggattatacacgaagtgtgaacaaaagtggggaa<br>acactggagactccacacagcagggtgatggtagtgatttcaacagctctgtgacagacagtggtggagatttttccttgaagcagaaatccagagttct<br>cttttgtgcatcttcagtttgagatgcccattagaaactcacatgcagatcctatatgtggaatttgacatatgaatttgtagttct<font color="green"><u>TGAACCCTTTTTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TGAACCCTTTTTT</u></font>ctgctgaaacatatctgataatcatcagaatgcaggtaatacttaaagccag<br>aagagcctcatcttaaaaaaagagggtctataataaaaatagcaaattttattttgtggttatgatatgcctaacactcacctaaaggctttttccatgt<br>tatgtttggaggtcccaagaccacctctgggtttgatgatttgctagggctgaaataactcagtacgtaatcactttcatggctatgattcattacagga<br>aaagtatggaaagcaaaatcaacaaagggaaatggcacatggggcattttctgagggaaaccagacacagcatcctttcccagtggagtgatgtagaata<br>tgcttaaacccccagcaattagatgggataacaca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	112709066	112709067	1001875	0	+	1104685639204	NA	NA	SINE	Alu	AluYb9	ggtagcagggtgcaaggatggataaattacagaaaggcatgaagacattttgcggggtaatggaattgttttatattttgaatctggtcttagtttacag<br>gtctgtacatgtcaaaactgttcaagttgtgcatttaaataggcatagtttattgtattccaattatacctctataaagttatagaaaagaaataagcaa<br>aaattataaaaggtaaacctgaaaagatccttgagagatccaaaatggatttgaacaaatggaaaaacacttcttgttttttaacaagatgattcaccat<br>cataaaaatgttaccatcaatttaatcttacatcaataacaatagttgtcttctggagctagacagttcatttaaaagtttatatgc<font color="green"><u>TGATTTTATTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>TGATTTTATTTTT</u></font>ggaataacaaataggaaaacactaaacaaagcagtaaggcaggactagctctaccagaaattaaaatatacacaaaatc<br>ctctgtaattaaaacagatggtactcacatatgactaggcaggtggactaatgaaacagaacacaaaatccagaaatagacccaagcacatctggaaact<br>ttagtataggaatagactgaatctcaattcactcagttaaagatggactacttaataatttgtattaaaacaacagaatagtcattttggaaaagataaa<br>aattaattccatgcctcaaatcacacactaggataaaccccaaatgaatcacatctctgaagataaaataaaacaattcatatttctaatatagaatatt<br>gatcgatt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	113936196	113936197	1001876	0	+	1104685638840	NA	NA	SINE	Alu	AluYa5	ccaggtcctgggctgaacacggtgcataaactcatttaatatctaaactagtgatatttccatcttactaaagaagaagctgagccttctagccagtgag<br>tcacttgttgaaagtcacatggcacaggttgagctgtgattgaggcccacacagtagtgagcattataatacccaggcctatagtcctttggctgattgg<br>ggccagatgtagttcagatttctgaatttttaagatttgagagaagtaaacagttcatatactgtacattaaaacacccctagtgggtactctacctttt<br>aacgttcctactaggaatatgggcagcctctcatgattaaacacattaattaatatatctgtcataaaagataaaaatactcacatt<font color="green"><u>TCTTTATTATCTT<br></u></font><font color="red">GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAA<br>AAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTT<br>GCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCTTTATTA<br>TCTT</u></font>tatgtcctcatattgcaggtaaacgttgttgccaaataggtctcaaaagagtttccattttcaaagttttttgagttttagaacttcacataaagg<br>attccggacctgcactgttcactaggtttagtatctctcccttcccggggtagtgccgacaatactgctgattcttactcttactttaggtttgatgagc<br>caagcttccagctccaggttttcttgagtcagggtaaaatacatttggcctctagggggagctccaggcctccagtttcactccacttcaccacttcccc<br>agaccccaatctacaccctggaaagcaaagcgctccaaccccaaagaggagctgtacaactggacatgtcaagaagtacttacattgagcc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	37336606	37336607	1001877	0	+	1104685212316	CAAATTACATTTTTGTCACTAACACTT	TGCATAATTCAAGAAGAATGTCG	SINE	Alu	AluYa5  	cttggccacactttctttttaaaacatttaaaaaattttaacaatttctttcaatatttatatttctctttcattgttgatgttcagtataaccaacaca<br>ctttcattaagcagtttgtttatccatccctcccacctggcagtaggctatgattagggacaaaaaaaggaaaagatagattaattgaagcagtgactgc<br>ataattcaagaagagagtgcataattcaagaagaatgtcgaaaatctcatcagactgagtgtacccagagctcaaggctgagaaaattttggctgacttg<br>cattttacagaagaagaaataaaaatggccaagtaatttttattttaagtggaataatttcagtactaattttcagtccatacgatggcttaaaa<font color="green"><u>NNNNN<br></u></font><font color="red">CCCAGCTTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGTGATCCCGCCACTGCACTCCAGCCTGGGCGA<br>CAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>cttcctgagctaacaaaaacaaccagaaagcagattgagatttttg<br>ttgaaagattttttaaaatagcataatttgaaagtttaaaacaaaaaatattttcttcacttatgaaagccttttatataagttgccataaaaaagtgtt<br>agtgacaaaaatgtaatttgtttttgtatgaaattattatccgtaagataatatgtgtaactcaaaaatgctttccgtgtaaaaggataataaatagtat<br>tttagattttaatcttctttcttacgtgtattgttgttttcactcttagttgcatctggggccccgagaatttctagcagcagtgattcttgaaatgagt<br>taacaagttctctacccagctctgtgggggcacatggatttacagtatg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	503	363	NA	intron:GOLGA4:NM:002078:12/24
0	chr3	50038044	50038045	1001878	0	-	1104685208878	NA	NA	SINE	Alu	AluYa5	gcctcctgagtagctgggattacaggcgtctgccaccacacccagctaatttttgtatttctagtagagatggggtttcaccatgttggtcaaagttcta<br>tacttaatttatcaattagtcttatatatttaaatgataaaatgaaataatgtggtcttaattactgctgtaaccctgatacctacactaggagacatat<br>atacagagcagggggaatcaatagctgttgaacaactatatgtaggcagcaatcaatgaaaacttgaacagtggggcacagtggctcacgcctatattcc<br>caacactttgggagactgaagcaggaggacggcttaaggccaggagttcccaaccagcctgggcaacatagtgacaccctgtctct<font color="green"><u>TTTTTTTTTTTTTT<br></u></font><font color="red">ACACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCTCGTTTCTACTAAAAATACAAAAAAT<br>TAGCCGGGGGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAG<br>ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA</font><font color="green"><u>TTTTTTTTTTTTTT</u></font>aaaaattaaagttgtatatatataaaagg<br>ttaaatttctaggtggcagacagaagatacatagaaaatccaacaagcacattcacaggtaggtatatattaacaggaataagtgcatctacctattcgc<br>caagagaaataacaattccgtggtgttttgttttcttttttgagatagagtctcgctctgtcacccaggctggagtgcagtggtgtgatctcagctcact<br>gcaacctctacctcctgggttcaagtgattatcctgcctcagcctcctgtgtagctgggattacaggtgcccatcaccacacctggctaatttttgtatt<br>tttagaaaagacggggtttcgccatgttagccaggctggtcttgcttctgacctcag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RBM6:NM:005777:6/21	
0	chr3	51738985	51738986	1001879	0	-	1104685208505	NA	NA	SINE	Alu	AluYb8	aatcaataatctaagcttctatcttgggaaactagaaaaagaagagcacattaaatcctaagtaaatgaaaaaaaaaaaaaaaaaaaaagaacccagccc<br>cacccagcagacctagttccaggtttgccccagtggatttaggctccaggtccaaccccacagagctaggcatcaagcccacccacctgttgacccaggc<br>agcaggccagcctgacagagaaatccagcagcaagtccaattgcctgcccagcatctctggacaggctaactggtgaagggctttctctgctaaagccaa<br>tctattaagactgaaagaagtgcctgcttcttcagatgcacagaaaccaatgcaaggtcacaaagatcatgaataatcagggaaa<font color="green"><u>CTTTGGTGGTATCTT<br></u></font><font color="red">GAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CTTTGGTGGTATCTT</u></font>gaacaaaataaagcaccactaaccaactctaaagaaatgaagatctgtaaaatgcctgacaaagc<br>atccaaaataatcatattaaataatcagcagcagagttgggcatggtggctcatacctgtaatcccagctacttgggaagctaaggtaggaggatctctt<br>gagtccaggaagttgaaactaatcacagcaacatagtaagaccccatctcttaaaaattttttttaattagctgggcatgatggtgtgtgcctatagtcc<br>cagctgcttaggaggctgaagagggaagattgcttcagcccaagagtttaaggctgcagtgagcttatgtagctgtgtcttaagttcattttgtttcact<br>ctgtcatctagacagagtga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	45517667	45517668	1001880	0	-	1104685210413	NA	NA	SINE	Alu	AluYa5	tctattttggaagtttcattccatataatggaatatcacgcagcagtgaaacaggaatgaaatataacttcatccgtcagcactgctgaatctcaaaaaa<br>ctgttgagtgaggaaagcaagacagaatacctgaaatataattctacctatgtaaacttcaaacacaggaaaaccagacaatatatagtttaaaaataca<br>tgcagaaacgatacatttataaagaaaagcaagaaagtgaggaattaaaaatctgggatcggtattagctaggggcgaggtggtgggcgtagaagagcga<br>tacacaattggagggggcaccttggggattctaaggtacctgaaatactctgtttcttaaactgaggagtggggcatgtatgttcatata<font color="green"><u>TGGAATTTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGA<br>GAATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>TGGAATTTTT</u></font>tatttaatgtgttgtaccattctttaaatacattaaatatgtaatttttatacatgatacgtttcatggggaaaagtaca<br>cacacatttttctgaacattatgaggaaagggttacaataggccaacaggaaaagaatttactgatgtttttacaatgtgattctctatttcaaatccac<br>tctatacattttttagagggatgcatcaaggtgggattcagccaagcttaggaacaagagctgacatggaaggactgggtgataagcatgacctcacatg<br>agatgctataaaacactatgggccactcctctctgcctcacaggtacaattcttaattacttaactcagttaaacagagaagcactgaaggctaggttct<br>atgcaagcat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LARS2:NM:015340:15/22	
0	chr3	28682063	28682064	1001881	0	+	1104685214322	NA	NA	SINE	Alu	AluYa5	aactgcagcccatgggccacatctggcctgtggactgtttttgtaagtaaaagcttattagaatacagccacattactttatttatgtatgtctatgact<br>gctttcagcactacagtagcagagttgagtagctgtggcagacactgtatggcctgaaaggcttaaaatatttactgtcttgccctttacaggaaaagtt<br>tactgacccctgaattgaatgagccacattcttcactttaaaaactgtgaaagattttacagctggatattactcttcccaagcctttctggttaggatt<br>tgtctttcaaagtgatcaaagaatgttggagatacaaataatctgagaagattcatctagtctggaatgtcttccattccacagat<font color="green"><u>TCTCTGGGGCTTTT<br></u></font><font color="red">CGGATCACGAGGTCAGGAGATGGAGACCATCCCGGCTAAAACGGTGAAACCCCGTTTTTACTAAAAATACAAAAAAAAATTAGCCGGGGGTAGGGGCGGG<br>CGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGGGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAG<br>CCTGGGGGACAGAGGGAGATTCCGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCTCTGGGGCTTTT</u></font>atcacgtggcttatacaagcttccac<br>agaatattagagatagactagagtgccctttatttcctacacaggtttgtgtattggaagagtacctaaacatactgtcaccaaaacaggatcatttccc<br>tcatccctcctcaaggaccttattctgtcagttacctcgtcttttctgtatcttctattgcttcctctccactgtcctttcaaattattattaatagaat<br>actcaggacttaaatattgtaataaggacattgccatcacctatttcatctagacataatgtcatgcttcttcccttcccttcattgcccacagtggcac<br>acgactcactattttactccctcaagttccattctaaattcagctcttctaaaactgttc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	171433674	171433703	1001882	0	-	1104685600204	NA	NA	SINE	Alu	AluYa5	cacttagctctcagtaattgcgaaaccactatgttcataacattccacaatcaccagatccttgttacagtaccaaagctaaaaatgaactgcaaaataa<br>agatattacattctaaaggtataaaacaaattatgcacgtatgatgttttttccagtttaacttcagcactagcataaattattttaccactgatcctca<br>acagaatataatctgctttatcacaaagattcccaaaatggcaaatttagatatggttttagctgaatttttttaagcattttttattttgctattgagc<br>ttcagaagacaaactgctttcaatgtgcctatattctaaaatatagaatctattataaagtttttccttaggactaattgcttt<font color="green"><u>TTGGGGGTTTATTTTT<br></u></font><font color="red">AGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>TTGGGGGTTTATTTTT</u></font>aagaatcacattcagtccttctgctacctcagtgtaagcttttcttctaaattaggctattcgaaaaaata<br>cttttatttgcaataaccattataataattggtttaggcaggattatccatgaatggtaagaccattgggcaaaatgttttgggggactagagtattcat<br>ataatctcaaagtatcaccccccaaattattaattataaaaaaggtcataaagcaatttccaccttttaataatgaagaagatagtgaattcaaaaataa<br>caattgtgaaatatgaatgtaacaataaagtaaaaaagcaatgttataaagccctgtcaatgtagtaaggggaaaagagaaatctctttgagttcaaggt<br>ccagtttttgctg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PRKCI:NM:002740:1/18	
0	chr3	167872925	167872926	1001883	0	+	1104685600949	NA	NA	SINE	Alu	AluY	gtatttttaatggagtcggggtttaaccatgttggccaaactggtcccaaactcctgatctcaggtggtctgcctgcctcggcctcccaaagtgctggga<br>ttacagttgtgagccaccatagaggtggaggcaggagaatcacttgaacctgggaggcagaggttgcactgagctgagatcatgccactgcactccagcc<br>tgggcaacagagcgagactccatctcaaaaaaaaaaaaaaaaaatgctgactctcacatcactggtgatcttcctttgctaaaccccaggtctaatgtgc<br>ttaggtattcatacaaacctactagtcatcaaataaatatggaaaacatcccacataaaatatcccttttatggagttttataacatacatt<font color="green"><u>CTGATTCT<br></u></font><font color="red">GCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>CTGATTCT</u></font>aatcctctaaacaaacctgtggtaaagaaatctgcttaactttgtttcgcactctctctcaaagttattttaccctagcatt<br>tttttgttttctaaataatagctcataaaactatgattctatagaacaaattctaagaaataccgcattcactagtaaatcgagaggtttaatttagggg<br>aaagaaaaatttggaacagacaatggaataatgaagactatagaagagtagtgtgatcagctaaaaaaaactcacacattcaactcttccatccttttca<br>tttctttgcaagtctcaccctgctgctgcccagcagatgtcaaaatgagcaggaaaaccacattgctatacagagattccttaatggcaagctcttgctt<br>ccctaagact	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	168027298	168027299	1001884	0	-	1104685600908	NA	NA	SINE	Alu	AluYb8	gggtattgacggccaggcttctaaacccctgaaaactcccccactcttgtgccaacttggacaacactcttttatgcactcttttttagttatccccacc<br>tgcccagttcacttattaggccaaaatattttaaccaaatcatctgcttccctgactattcctggactacagccgcatctcattgctgcacttcttccca<br>acccaaagcctcctttgcgtcttcctctcctatccccccaccttaacccacaagtatgggacatctctactccttcccttgcaaccgatgacatgcccat<br>taccatcacatgtccattaccatctcattaaaacctaatcactcttacctggctcaacgccaatatcccatcccacagcatgctt<font color="green"><u>GGCTTTAATCCTTTT<br></u></font><font color="red">CAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGCCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GGCTTTAATCCTTTT</u></font>tgttaccacccgcctgctacagcatgggcttctaaaacctataaactctccttacaa<br>tttccccattttacctgtccaaaaaccggacaagtcttacagattagttcaggatctgcaccttatcaaccaaattgttttgcctatccaccctgtagtg<br>cccaacccgtacactcttctgtcctcaataccttcctccacaactcactattccgttctcgatcttaaagatgctttttttactattcccctgcacgcct<br>catcccagactctctttgctttcacttagactgaccctgacacccattaggttcagcaaattacctgggctgtactgccgcaagtcttcatagacagccc<br>ccattacttcagtcaagctcaaatttca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	175893445	175893446	1001885	0	-	1104685599086	NA	NA	SINE	Alu	AluYb8	atgcaacaccctatggtccacttctaccaagtaaaacatttgaaagtttgacatgaattaagaaaagtgaatgcagtaaactctccatgtcataaaacag<br>gttttcatacactcaagctgcatggactttagcattcagttctaaatgaaccaaagttaagcaataataattaaaaccaagaacatcctggtgaatagtg<br>attggatgttaactcctgatggccctaagagcagtactggaagaacagtgcctactgggtcttaatccacaagagatatcatgaacttagacttctactt<br>tgatcacagacttaaagtgatacagaggaattaattatcatttattattttactggttggtatttatattctgtatgttgaatctc<font color="green"><u>ACTCATACCTTTCT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAG</font><font color="green"><u>ACTCATACCTTTCT</u></font>tcatatgggtccctacaaatagaaccttttataccaataattttattatcaagttgagttcaggaacaaaatgaagt<br>aaaatatgaaaacttgtttaaaagagacaataatgattgcagtattttacaaagcatttttacatatatacttcctcctaacaagcatatgaaatataaa<br>caacacatagccaagtttgttattggtttcttatgtgtcaggatatacttcatctattttaaagatgtaaattctgaaacatgaatgggcttagtaattt<br>gtcctagtatagaggtttccgaacattcttttttggtggtacccttagtatctcagaaatatatccatagtggccctaagccaaaagacttaaaatacag<br>cttccagaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	139048087	139048088	1001886	0	-	1104685607795	NA	NA	SINE	Alu	AluYb9	atacattgattgatagtgtgcagggtgaaagctgggcctgcagggccttggccattggatgccagggcttgtgaggaaggagaagctgcttgacatgaca<br>gtgggaacgaatctggatgccagtctccccagaactatgagctgaaggggtggtgacaaaggagggcagaaatactcagtccagggtgggagtcagaaaa<br>gacttatagtggaggcaacacctggatgttcattagctgggccagctagcaggaaaatcttccaggtagaggaaatagaattttgacaagtaaaggtctg<br>gctaaataaaatgtgaagtgttgtcatataatggaattccacagaataatgaaaagcaaacctctaaatctacatgtatcaacatagat<font color="green"><u>GCATTTTTTTT<br></u></font><font color="red">CGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCT<br>CTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAG<br>CGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GCAT<br>TTTTTTT</u></font>tgtgttaaaggcaagttgcagaattgtatatgtttatatgtaattatatgtgtatatagacatagatctaaacccagaaaaaaacacagcaaa<br>ctcatcagagtggttatctctgtctggagagcagagaagagcttgagggtggagatgaaggggtcttaagttttatatgtagtgttccagtttctcaaaa<br>ggtgaaaaggtaaattattgacacattatttaaggaatgaaaaaatgcataaaacaaggagaaaattggtcagtgccacagacagagagagatggaatct<br>atggaacacgaggtggaagagagcacttccagctggaggagtggaggaaaattcctgaaggaggcagcctctgattgaaagatgggccagacctgg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	146170575	146170576	1001887	0	-	1104685606127	NA	NA	SINE	Alu	AluY	tgtttatgctgtctccatagttatgcattataatctatattaatggttatctacaaatttatgtgttatatatatgtgtatgtatataacataagtttcc<br>attagatcttttagaacattgaaaatactgaaatctttgttcagataatttcaaggttacatgcatgtgtttggatgagagagacactgagagatggcga<br>ggacttggcagaactggaaccactatgtaaaccatcatgcatattttacacctctgaaggctatgactgagaagcaagtggcaaacccagccaaggctgc<br>ataactcaggcctgagagaatatcaacagaaggctacaaaatgccttgatccatctatggctcatcctcatgtttaattgttga<font color="green"><u>TGGTTTGTAATTTATT<br></u></font><font color="red">ATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACA<br>AAATATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGA<br>GCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAAAATAAATAAATAAATAAATAAATAAATAAA<br>TA</font><font color="green"><u>TGGTTTGTAATTTATT</u></font>atggcaaaatgtcaaaaaagaccatataaataactttcaagaaacatattaatgggctgtccagtgtgtgaggcagatggct<br>caccaatatattcagttcaataaaaaatggtttttacattgttgtcttagtcacagagaaatcatgtaatatgcccatagtcacttagtaagttataaaa<br>caaaaaacattacaatttgaacccaagtgtttgacctccagagatgatctgtgcttagtctctcttctgaaatacacattgggattttttattccaagca<br>cagtggttttatgtatgcacattatgagctgggatagaactaggtagatatgcagacagaaggccaacaaatatcagttcctaggagaaatgtctgtgtt<br>ac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	153231541	153231542	1001888	0	+	1104685604346	NA	NA	SINE	Alu	AluY	aatataaagtgagtcacaaatagaattttaaatttcctactagcctaattaagaaaaaaagtaaatataaataggtaaaaatatgttttcaaatataatt<br>tatttgcccaatatatccaaaatatattttcattgatttcaacctgcaatcactataacattttttgaatgaaatatacacattattttttatcatacta<br>ttttctaaatccagtgtgtattttacacttacacctcatctcaattcagactagtcatatcccgagtgctcagtgtcccctgtgggtagtggcgagagta<br>ttagacagtgcagttcaacattgctactcttccacttacctacacaacctctaaaaagaaatgattaaataattataaacatt<font color="green"><u>CATGTTAAGCTATTCTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAGCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGAAAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>CATGTTAAGCTATTCTT</u></font>taaatacaaataagctgatggccagtttttatattagatcaccagggtgtagtattaatagttaagcgtgtactcat<br>taattacacgaccttgggcatattgcttaacctccttgtgcttcagtttcctcatctacaatataatagaaatagaatattacctacttcttagggttgt<br>tggaggattaagtaaatcaatatgcttaaagcacatacagtaatgctgggaaaggcaagttctgttggaggattatgtaaatcaatatgtttaaagcacg<br>tagaacaatctcgagagaggaaagtgctctgtaattgatggcagttattattagtagtagtattacttctatagaacagtgattctcaaaatatgtttta<br>aaatac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	157722576	157722577	1001889	0	-	1104685603246	NA	NA	SINE	Alu	AluYa5	aaaaagaagagtggcctggagcatctctccagagatgacatttggtgccagtggtgatgaggtgggcattgtgaacaatggacactgccttggggccggg<br>gcagacttcctgggccagagtgctgtctatgtcagagagtccctgaacttacttttggtgtcctcagtgggaaaaacatcaccaatcctcactaaagttt<br>cataacatctttcagaggaccaatatctctgaatgttattcaaaccgactaacaaagattgaaaactaatagccaactgctttttgaacaattgcttctt<br>attagtattagaatttctgagtttcagtatataccatgcatgtaaagagtggttggtttatcaatcaatcttttgtaacttttccgttttt<font color="green"><u>ACAAGATTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>ACAAGATTT</u></font>atgcagtgcattctctttcttaggattgggttacaagttctatttatgtgtgtgtgtatatgtgtatgtgtgtgacacacacatacacac<br>cattttcagagacagacttccaaaagttaaaaaaaattaaaaagaaaaaagcaattatttattgagtccctatccatgttcaacaccataaatctcattg<br>ttgctttaacctatggaaatacaagcagattagggtttttaaaaagtagatgcatagtttttatactgctttcctcataccaaaggaaacaaaagtgtgt<br>tggaaataaacagctttaactgctttacaaatgagaaaatgttagcagagataggagatgaggcttaattaaaatgttaattaaatatggaagcaaacaa<br>g	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:KCNAB1:NM:172159:11/14	
0	chr3	134060414	134060415	1001890	0	-	1104685608995	NA	NA	SINE	Alu	AluY	aaacttatttctcctatctaatcagtatttgaagtgatgtatgttaattagcttgatgtaattattccatattgtattcataagtcataacttcactttg<br>tgccccataaacatgtacaacaataatttatgaatttacagttagaaaaagaacactttttaaaagatttccttggatgacatttgacagttgttttgta<br>ctcataagatgttatcgtttttttgccctatatctttactcaccatcattatcatactgattagagagaaaaatgtgtttttttggtcagtggaaggtga<br>tttattagcaaatttagaagcatgtagcagcacgacaggtagatctttgcactgttaccccctagacccagggcttacatgccatataagaagag<font color="green"><u>NNNNN<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTTTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCCAGACTCCGTTTCAAAGAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAGAAGAGCATATG</font><font color="green"><u>NNNNN</u></font>cagaagtaatgtgtaggatcactgaaattaacccctcagggaaaggcaagaacgctatgtgcctcatagc<br>ccataatttgccaaaagacaggacttaggtaagtacatatttatgataacatcaaggttgtcttggcttacacaagcaacagtaaataaagtcaaaatct<br>tagagacattcctgggcctggggttagtcagaagtcaacatggcagattagcatccaacatgaagtggcattatcctgtgtagtgtccagtgatgtacat<br>ttgtttagaagggagtaaatgagattgagcactgggagcaatagtagaaggacacccaatagcccaaagttggaaggagcacaagtgttcattgatggaa<br>gaatggataaacagaatgtggtcta	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NCRNA00119:NR:002811:9/11	
0	chr3	128498237	128498238	1001891	0	-	1104685154840	NA	NA	SINE	Alu	AluYb8	tagaacctccctcatgtttgtctcctaacctctctttcatatattccatctctgtgtctatccatttgcactacgtttgaattctttacctttaagctat<br>gtcatattaatttaatttaatttaaatatttttaaggcagggtcttgttgttacccaggctggagtgcaatggcgcaatcatagctcactgcagcctcga<br>acttctgggctcaagcctctcatgttgctgagactacaggcatgtgccaccatgtccaactaattttttttattcttttaaatttttaaaatagagatgg<br>gatctcactatgtttcccaagctagtctcacacttctggactcaaatgattctcccaccttggccttccaaagtgctaggccactt<font color="green"><u>AAAATTTAAATTTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTTAAATTTT</u></font>atgtttatatttacttcaagaagttgtatttgcttcatttcaaaatctacatgttttgtttgttttcatat<br>tttcctgttcatgcttatgcattttattccttattttatcttgttaataattttaagcatattggctttatacttgttatttaaatttcttgatatgcta<br>atccttctcttcctttttttagcctactcttccactcagagactcacttcgttatcgttcatatgggagtccttatcttctggagatgtgtattgaaata<br>tttattattgaaatggcatgatgcctagggtttgcttccaaggatcgggtgttgagggagtgggtggggtatagataaagcaatattgggtctgggattt<br>gtagtttttacttat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	131421122	131421123	1001892	0	+	1104685609526	NA	NA	SINE	Alu	AluY	tactccaaaggtgcacaattagtgatgtggattgaattcctgataggtgaaacagggagagtcagaagacatggctctttattgaggtttaatttctaac<br>ttgaagtttatggatcagactttggagaaggtgggagataccatactttcttaacactggagagccttcagtttcagctaaatttagttaaattcaataa<br>acacctgtcaagtgtttattgtccctacatgtgggacatttgctagatacaaaaaagggttccaagatacataagccatggctctgaccaacaaagagct<br>tattgagtgtgcaggagatacaactggtacaggaaaaactataatatgagataggataagctacaggatgtaacaatgctgcaaat<font color="green"><u>CCCATTCATTCTTT<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTTTACTAAAAATACAAAAAATTACCCGGGGGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>CCCATTCATTCTTT</u></font>gcacagtgacttggagaggaaacgaaaatagattcccttttcttcacttgatcaatcatcaaaatttattgagcatct<br>attgcaatcaaggcatgattctagaatggggaacaaaagagacatgggctctatctcttaggattggcctctatggaaaaagatagacatgaatgaaata<br>atcacagaaatagatataatattactgcagagataaaggtatggaaaggaatacgacaggggatttgacccagcctgtgtagtcagaaaggcttcattga<br>ggaggagatgggatgaaatttaaaagataggtaacaattaaggaagagagaggggggcaagagaacaacttctatatgagcaggtgctgaagggtggaga<br>ggactccg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	54110411	54110412	1001893	0	+	1104685020781	NA	NA	SINE	Alu	AluYb8	gatgaaataatatgtgcaaacccccatgacatgtatttacctatgtaacaaaccttgacatgtaccccccaaatctaaaataaaagtaaaaaaaataagt<br>tctccccttaaagcttctgggcaacaaggtcataaaagacactcatcttgggtaaaattgtagttacattcatagacttcaatgctcaatgttttggacc<br>tttgctttcttacatttctttcaacttggacagtaaattaaaaccattgttctatttttctctttttcagttactagcccagtatttggaatttgccaaa<br>gctatattcctcagaatttacttcaagagctcctttgtatcggcggagaatgaagaacggagaagaggaggaggaggttgaaagaaact<font color="green"><u>AAGAGATGTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAGATGTGG</u></font>caactaattgcaacgtgtagattgtatttagctcatgattcacacaaactagatatttgttattaaagaattatggtt<br>gtttttggtgtgatattagtattgtgctcacatttcttaagaatctatctttagagataggtgctgaaattcttgcagatgaaatgacattatcatctga<br>gatgtgcttcaaaaacagttaaaggagatatcgataagatggccttgaattcacaattgctgaagatgggtataggccacatggagttttattataatct<br>tttctctccttttatattgtttgtagttttccattataagttaaaatgaagaaaataagtcaaccaacatgaagcggtcagtgagattcttacggacatc<br>ccagctttgcc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LNX1:NM:032622:1/10	
0	chr4	64899341	64899342	1001894	0	+	1104685185727	NA	NA	SINE	Alu	AluY	gtggagccatatccaattaattgaaagcctcacttgataaagactgatctcctttgaagaagaagaaaatttgccagcggactgccttttaactcgaaca<br>gcaatttttccctgagtctccagtctgcccgcctatcccatcaggacgtgccaagcctccacaatcacatgagccaccctccacattcttttggttctgt<br>ttctctagaaactccaactaatttaataaatatggtaatatagtcaagttgtgtgaaaagttttatagaaatcagtgattttaattaatcagtttcaata<br>gttaaccttttaagctgataatttatgtaagtacccccaagtaaaatatgggttatggtggataacaccaaaggaggaactggagatcattataa<font color="green"><u>NNNNN<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>agc<br>cagacacagaggatgactttcacggttctcactcatatttagaaactaaaaaagttgatctcatgcaagtagagagtagaaagataccagaggttgagaa<br>gggtgattggatgggaaaggggcatgaagagagattggttaatggatatgaatatacaattagacatcaggtataagttctaatgtttgattgcagaata<br>gagtgactgtagtcaaaaactgtgtgttgtatatttcaaagtagctagaaaagggaacttttttttttggcagagtctcactttgtcactgagtctggtg<br>tgcagtggcatgaggatggctcacttcagccttgagctcaagcaatcctcctgtctcagcctctgaagtagctgggaaggagacacatacca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SRD5A2L2:NM:001010874:2/12	
0	chr4	66420977	66420978	1001895	0	+	1104685186247	NA	NA	SINE	Alu	AluYa5	cagtgagctgagattgtgccactgcattgcagcctgggggacagagtgaaaccctgtctcaaaataataataataataatggcattcaagaactaagtaa<br>aaataaagtgattcttaccactcgggccccactaccatagagaaaccccagcacataggaaaaatgagaatgctaagaatatttattgacaaaaaaaagt<br>tcatcacaataagaaagtatcaactgaaatatatgtaaaaaaataagtacataaatagtggcacatttatatgatggattatataaagttctcaaagtga<br>acaggtagatataacataaaggagtgaatctcaaaaacaaaatatagaaccaaaataagaaagactacatgttcacaaaatgtgataa<font color="green"><u>AAGAAACATGTC<br></u></font><font color="red">CGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACATGTC</u></font>aaataacactatgtttttcctatagatgtgtatacagataaaaaattagaaattctcaccgtattccaca<br>tattccagatagtgtttatcatgtctggggtatgttacaaagaaaaatggcaatggaaacaacccatagagtttcaaatctacctaaaatatttttagtt<br>ctttaaatatatctgaagcaaatatggcgaattattaatactttatgaagatgtacaatatttaaaattttaagtttatatactttatattaaattatag<br>tttatttctacataattatatttggacaactttattcacttttaaaattgattaaataagataactaaaaattatctgtatggacaatagccacaaatag<br>agcatatactccatgaca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	67646487	67646488	1001896	0	-	1104685186534	NA	NA	SINE	Alu	AluY	aatgtcttcttttgagaagtgtctgttcatatcctttgcccactttttgatggggttgtttgtttttttcttgtaaatttgtttgagttcattgtagatt<br>ctggatattagccctttgtcagatgagtaggttgcgaaaagtttctcccattttgcaggttgcctgttcactctgatggtagtttttttgctgtgcagaa<br>gctctttagtttaattagattccatttgtcaattttgtcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgacctga<br>atggtattgcctaggttttcttctagggtttttatggttttaggtctaacatgtaagtctttaatccatctcgaattaatttttgt<font color="green"><u>AAAAGTTGTAAGGA<br></u></font><font color="red">CGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTA<br>AAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGC<br>CTGCAGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGTT<br>GTAAGGA</u></font>gggatccagtttcagctttctacatatggctagccagttttcccagcaccatttatgaaatagggaatcctttccccattgcttgtttttgtc<br>aggtttgtcgaagatcagatagttgtagatatgcggcattatttctgagggctctgttctgttccattggtacataacgaaatgaaggcagaaataaaga<br>tgttctttgaaaccaatgagaacaaagacacaacataccagaatctctgggacacattcaaagcagtgtgtagagggaaatttatagcactaaatgccca<br>caagagaaagcaggaaggatccaaaattgacactctaatgtcacaattaaaagaactagaaaagcaagagcaaacacattcaaaagctagcag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	61507704	61507705	1001897	0	+	1104685184761	NA	NA	SINE	Alu	AluYb8	gaaggaacacttttaataagatgtgtctctctttgggctacaaaacaggatgataattggtagatatgagtttaattcatgaattttaaaagcccaatat<br>ttgtattgggcttttaaataaccagtcgtttaacctggattactgtggacaagttacttaagctttcagtacctccatttcccatgagtaaaatgagaat<br>agtaatggtatctgtctactaagactatattcacaactaaataaggtcatctatataaagccttaacaatggtatctggaatagagcaaatggaaaatct<br>tactattatcattagtaagattagaatttatatgatggagccagtggtgcaatggacagcacgtctgactatggaacagaagatta<font color="green"><u>AAAATTTATATATC<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTTATATATC</u></font>tacccatatcatattattagtaatattgttatatattgaggtatgtaaaaggtacagtttcctcatgaatg<br>ttagtttaataaaagaaagagacaaaacttctcttgacttccttctcaatctggcagaacctcacctatacagaaattatcgctgacatctataggccca<br>atggtactaaagggcaaggagaaggctacactaaattgtgtcatctatgtctactgtatcttgctcctgttcattcttagaacgctggctaaatagatca<br>aacagtaatagctgatcagtgggttgccccttctcaccattccatactccaccagatacataaactttcaaccatatcattttaaagatatgtggtttat<br>ttccttagtttgtaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	35397256	35397257	1001898	0	-	1104685759521	NA	NA	SINE	Alu	AluYa5	tatgtatataccaaattttctgtatcagttcatctgttgatgaacatttagattgacttcatatctttgctattgtaaataatgctgcaatagtccaggc<br>ccagtggctcatgcctataatcccagcattctcgggggcctaggcgaacagacagctttgagctcaggagtttgagaccagcctaggcgaaatggtgaaa<br>ccctgtctctacaaaaatacaaaaattagccaggcattggtggctcgtacctgtagtctcagctattcaggaggctgagaatcccctcgagcccaggaaa<br>gtggaag<font color="green"><u>TTGCAGTGTGCTGAAATCGCACCACTGCATTCCAGCCTGGGCAACAGTGTGAGGCCCTGTCTCAAAAAAATAAAAAATAAATAAAAATAATGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTCGGGAGGCTGATGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCT</font><font color="green"><u>TTGCAGTGTGCTGAAATCGCACCACTGCATTCCAGCCTGGGCAACAGTGTGAGGCCCTGTCTCAAAAAAATAAAAAATAAA<br>TAAAAATAATGC</u></font>atgaacatgggaatacatatatctctttgatataatgatttgttttcctttggataattatccagtagtgggattgttggatcatatg<br>gtagttcaatttttagttttttgagaaatcttgctgttttccgtggtgactgtgctaataatttacgtggccgccaacagtgtttgagttttgtcttctc<br>catatcctcacatacgtctgttattttttgtctttttaattgtagccattctaaatggggtaagatgatattgtggttttgatttgcctttgcttgatga<br>ttagtgatgctgagcattt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	36001600	36001601	1001899	0	-	1104685759676	NA	NA	SINE	Alu	AluYb8	aggaaagtggaactgcagacatgaggataacatgtaagggagacgcatggagtgccagagttctcccttctccatccatccttctcattggaaagagtga<br>gaagattttggaaacttttagaggttaaaaaattaacataacatttctacttaccaagaacctagtggctttcttctgtaattgataggggaagggacat<br>gatgcaccaaacatgttactggaattaactctagtatagaaagcatgacactaagttatggaaaacttaacaatcacaatgtgggcactgttccctcaaa<br>aaccacagcaagaacaaagcaaaacaaaacaaaatcctgatttttcttataggaatttcttctaatgtgctctttcaatctgctttt<font color="green"><u>TAAAATACCTAGC<br></u></font><font color="red">CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAA<br>ATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGC<br>AGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAT</font><font color="green"><u>TAAAATACCTAGC</u></font>ataacataataagttccatttgatccttcaaccctaatataattttgtaaaattactgcaactgagaagtctgagtaga<br>attaaaatgcttttggatgtaaacattttttaatggttcagaatcatctcatttatctagtcaaaattgctttggtatttcatattggtggaaaaaataa<br>tataggaacaacattatccctagcagagcagtgagatggtaatgaaatccaaagtggtgaaagtggcgattctgacgaactgattcttgcactgccatct<br>gcctgcttcctccctttgacacagcaagttatttaatgtggtgagaaagaaagtgttgaagcagtatcattatttactagaaatcacatgtcaggagttc<br>agtttaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FLJ16686:NM:001136536:7/9	
0	chr4	11848393	11848394	1001900	0	+	1104685313240	NA	NA	SINE	Alu	AluYb9	aattcgccctccccaacacttccaagttttctactattatggaatcagatggaagtttaagatttcattatcaaaaccaggtccatgttcagatgaagcc<br>ccttttgtacgacaactctagtgcagtttctatcaatttaaaaatctgtaaactaaagagacaggagactatatacctcccaactctctctctctctctc<br>tctctctctctctcacacacacacacacacacacacacacacacacacacaattcaatagtgggacaggcacgtgacaaccactgtagtcattttcattc<br>aaaggcacacaaaatagaagacaccagataataacaatttctaaaatgcaagcaagcacacatcatcagttcttgattagaattccatgctactc<font color="green"><u>NNNNN<br></u></font><font color="red">TTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCCGGACTGCGGACTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCG<br>CTTCCCGGGTTCACGCCATTCTCCTGCGCTACTCCTTTTT</font><font color="green"><u>NNNNN</u></font>ttacccttgactcttggctctgcactctgtggtcgtgccccaaccttccaaatca<br>atcagttttctacatttttagataggatgcatgtttgtaactaagtgtccctctcagccaactttctgcctattaaaatctggtttctcaaaagtctatt<br>ttctctttatactatctgttcctttcagtccttttctcttaaaaactttctagagccaggtgtggcagctcatgcctgtaatctcactactttgggaggt<br>caaggcagaaggatcacttaaagcctagcttgggcaacataatgagatggagatcatgtctccacaatatatatatatatatatatatatatatatatat<br>atatatatatatatatatatatatgtgtgtgtgtgtgtgt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	1291833	1291834	1001901	0	+	1104685132462	NA	NA	SINE	Alu	AluY	cccagagaccctgggaagctggtgcgtggctcagtccaaagccaaaggcctgagaaccctggggggatgctggtgtaagtcccaacatccaaaggccaga<br>gaccctggagttctgatgccaaagggcaggatcccagctccaggagggacaggaaattgcttatcctctgactttcttgttctgtctgggccccagcgga<br>ctggatggcaccacctacctggaggacatcttcccactcacccaccagtctcctctggaaacacccgcacaggcacacccagaagtaatgcttcacaggt<br>tctctaggtatcccaaatcccatcaagttgatgcctgaaatgaaccattacctgtgcagatacggtcatgtgtcacttacatg<font color="green"><u>AAAAACTCTCAGAAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAACTCTCAGAAATG</u></font>catcgttaggcgactttgcggtgtgaacatcgtggaatgaactaacaggagccagatggtgtggctgctgcacgcccgca<br>ccgtggtacagcctgtggctcctgggctgcaaacctgtacagcatgtcactgcactgaatactgcaggcagctgttccacggtggtgttttgcatggaac<br>acatcgaaacatagaaaaggtgcagtgagaatgcagtatcctaatcttaatgggaccactatcacctgcacggtctgttgttgaccaaaatgtcgttatg<br>tggtgtgtgactgccacgttttctttcttcattcccctggtgatggacatgtgggtggcttctgcctcgtggctgccatgaacacaggtgtgcagatacc<br>tcc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MAEA:NM:001017405:1/9	
0	chr4	10331391	10331392	1001902	0	+	1104685312839	NA	NA	SINE	Alu	AluY	aaaagatcaataaaatttacaagtttctctgaaaaggctgacaaaaaacgaacacaaattaccatgactaggaatgaaagattactaggaacatcactac<br>aaattatttaaagacttctcaaaacccgatgaaaaaaattaaattagaaagtaggctagagatacgaacagatatttcggaagaagatacgcagatgaca<br>aatgagcgcatgaaatgttcaacatcattaggtattaagataatgaaaattaaaaaactgcaatgagttatccctacatacctattagaatgactttaaa<br>aacctccgcaaaacgtgtaccatttactttctactgtactatgaaaacgtaatgaggtacagaaaaaccacaagagagat<font color="green"><u>AAAATAAAGAACTGAACAAA<br></u></font><font color="red">ACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACC<br>CGGGAGGCGGAGCTTGCAGTGAGCCGAAATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAATAAAGAACTGAACAAA</u></font>aatgcatacaaaaaaaaatagtgacaccaccaaatgctgacaaggatatgttgaaaatggatcacacataca<br>ttgctgatgggaatgtaaaattgtacggggacgctggaaaacagcttgacagtttcttaaaaaaataacaactaacaattgcactcctgggcatttatcc<br>cagagaaatgaaagcttatgttcacacaaaaattggtacacaaattaattataatattaaaaactggaaacaatgcaagtgtccttcagtggctgaatga<br>ttaaataaactggtacatttgtatcatcacatactactaaacaatacaaaggaatgaattgttaatacatacacaacttgggggactttccagagaatta<br>tgttgagt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	148273400	148273401	1001903	0	+	1104685730743	NA	NA	SINE	Alu	AluYa5	gaggatgcagctgaatactggtgaataccctttgcattgtcctctgcttcccaggcctcagaaacatgactttctttcttttccctaggagaagggagat<br>gggagaatgaagaaatagagacttactatggcttaactcattgcattcatctctgatttaaaagcttggagtcagccaagatgctgaatcctgaacatac<br>ctgccctcataatggacttatgatatcctctaagggtactttgttttctaggactcaattttactatctgtaaggtaagcagataagattaaacaggtgt<br>tttttcatctgtgctctgagaaactttaaggactcagataatttgcctaaggagagggacttggttttatgtcgcttgcatttggtctta<font color="green"><u>GAGTAAAGCT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG<br>AATAGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAGTAAAGCT</u></font>tccatttaataggacaaatacacatttaaaaatgcagtgtttgaaaaccactggctagatgat<br>ctaagtgatctgtaatgaggcctctccagctctgacactttgtaattacaaaatttcttcaacttgcatgtacttttcaataccattctcacaaagcaaa<br>atgcacagacatttaactccagttttaccgaaaatatgagtcaacatgaaaattctgggaaggctgagtatgaaaaggtataaatggctttgatttcttt<br>tcttccaaatgaagctttcttttttcagattttttaagagatgacaggcaaagagtatgagtctgggaaagtagcttacactagaaaaaaggagacctca<br>tgtctattcactgtcaaacacgtactc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	126197214	126197215	1001904	0	+	1104685448566	NA	NA	SINE	Alu	AluY	atgaaagacactaaactggttgagatgttctcattatacattagaggtcaattatttctctgagaagaaaggcatatatcattatgtatgtaaaatatat<br>aataaggaaatatatattgagattaggaaaatgtataatatattgagaagttggataagaaagtagaaatgaagcatgttgtcctcaaaatgaagctcag<br>caattgtattacactaaacactattaatgactaagtctgtacatagtgaaagcaattcaattctattttctttttctgaaacagttataattcctctatt<br>gtacctccatgttacttatcagcataataaactttctcaaagtaaaacattttcagaaaaaatatgagtaatatatatgagctt<font color="green"><u>AAAAATGTCAAATGAG<br></u></font><font color="red">GGGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACA<br>CGGTGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAATGTCAAATGAG</u></font>cctttctgttatggccaattaacttgtatattcctttttttccccctcaaaaaagagattccacttgaactaaggaa<br>aaattttcaggatatgagacacaactacacatttgaatatttttttcttgtataagaaattgactttacaaagctataaactactctgagtttatgggct<br>tttggaaataatgacctccattagagtttgtaatgcattctgggcaatatcataaaaaatatgtcagtagagtaatttcatcctcaaaatgatcatcttc<br>tgtgagtaataaattgcgtgcatatattcataaaagactctctgtggaatattccaaattcatatgcacataccttcactttgaaattttacaagaaatg<br>aatgaat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	138025974	138025975	1001905	0	+	1104685451403	NA	NA	SINE	Alu	AluYa5/8	gaaaatacagaaaaaaatcaatctgtatatgtatctctctctctatctaatctacctcatctatctacctacccattctctaaaagccatgctataagcc<br>agagaaattaactgttaaagttttgctatatttcattcatatatttttatttaaaaaataattggaagcatattaatacaatatcctgcaagcttctttc<br>tttcctaacaataaatcctatatacgctcccaaaaacattaaatatccttaggaaacatgattttttaatgaatagaaagtttccattaaataagcatac<br>tggacttattgaatcaaattttattaataaatatagattattttcaccttttacttactagaattaaaaaaatatatatttacattatcta<font color="green"><u>AAAAATGAT<br></u></font><font color="red">TGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCG<br>TCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGAT</u></font>aaagtagtacctaaaagttttacaaacactgcaagctgaagttttacaaaatat<br>tattttaaaatgtctataatattaaataatgaaataaatgcaaattaataagcagtacagtttttttgtgtgaaccagaattttttattgatttccattc<br>aattttacaattgtaaacataaatatgtattataaagtgcctttatataatactttaatgaagttactgtacatcattttgtccacttacacaggataat<br>ttgttggactcttttttatcaattagagatgttaacatttggaatgaaatatatagtttgtgtatctttttctcagctgataatattaatttaaatttaa<br>tttagttttaacacaattctcattgaacctaacatca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	133337291	133337292	1001906	0	+	1104685450275	NA	NA	SINE	Alu	AluYg6	ttctagccctttcaattttttaaaatattatatattctgccaagagataaatcagaataaaattaagtattgactatgccaacttctttctttcaaaatt<br>ttactggctttccaccaaactacaaaacaattattttgacatacatttcagacactctgcagtctaattatatattcagccttattaccccttttttatc<br>tagatgacttattggttctagccatatttaaaagtagttgagctatttgttggttgattaagttgttggttgcataccaatagaattagaataattccct<br>caaaatgtcaatattttatcctttattacaaaagagttggctacataataaaattcttattaattaaaagtcaattccaaaggcatg<font color="green"><u>AAAACATAAGGAA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTATAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAACATAAGGAA</u></font>agtgcattaaaaccaactggcttctattcaggtaaagtatttattataattttgacacaatttaagcaatattggaacta<br>tcagttgtatactttgcaaatatcaagttaattacatagcatgcaatataatgtaatattagattttctgcttataataatccatatataaaaaacatac<br>aaaacagcaataaatcaaagataattaatcctctaatacctatcaagtggtttaagatatgttcattaaattaatgtattttggaagaatgcataagaaa<br>aaaagttatgaaaatcatagcatatgctaaaattaacaaaagtaagttgggggaaaaatctctaacaacaaaatgtaaacactagaattgataatcagtt<br>gcttgaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	139444665	139444666	1001907	0	-	1104685451729	NA	NA	SINE	Alu	AluY	gtgacatatatggaatataagccttatttttacaagcattcacatagtcactatttacatagtcacagagacatagaatgtggtcatattttacataagc<br>ttgagataatgtgacatagcacgttagtaaaaatctcactttatgggcatgaactaatgctttaaaataaatctaagcttttttcccccgaatttttaag<br>aattgcattatgtgagagccatggaatcagtctgaaggaattataaaacaagtcgttgctcttgtcacaggataatgctgccttgtcctttacacagacc<br>cccagaccgttagtgacacatctccgaatgatttgcttaactcttgtccttttttttttttttaacatatactgttatcttt<font color="green"><u>AAGAGTTTTTAAACATCT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTTTTTAAACATCT</u></font>atagcaatgtcatacaagtatttactgggaaataaagcatatgctaatactaaaaa<br>acactcgactctcaggaatgttggaaaggaagttaggtgtagtatacagtatgcagaagtcagccataggtagccttttaagatggcctccaatgatcac<br>ctccgccttctggtatttatagccttgtgtaatctccttcccttgagtgtgagctggagctagcaactcacttctatcaatagactatggcaaatgggat<br>gggatgtcgcctctgatattaatttacaagagattgacttcagccttgttggcatattccatctctctctctctcttcagcactttttgcttgtgtgttt<br>tggtaagatgagttgctacgttatgg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	144640304	144640305	1001908	0	-	1104685729963	NA	NA	SINE	Alu	AluYa5	tgccacataattagaaagaatatgaagtaaaagctgtgtttccaggttttggtgagagaaaaattcaagcaccagaatgagaagggtaaaaatacaggct<br>cagaagagaaattgctgaaaaccaagcacattcacaagggcttatcaactctgttccaatgcagagtgaagaggggacccaggaacctgattgcaccctg<br>ggaaatgtgaagctctttgtgaaatgactattaaaatggcctgaagaggttgggtgtggtggctcaagcctgtaatcccaggactttgacaggccgagga<br>gagtggatcccttgagtccaggagttctagactagcctgcgcaacatagggagatccccatctctacaacaacaacaacaaaaatt<font color="green"><u>AAAAATTAACTGGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAAAAAATACAAAAAAACTTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAATTAACTGGG</u></font>atggtggcgtgcacctttagtaccagctttttgggaggttgaggctggaggattgcttgagcccaggagttcaacgttgcagtga<br>gctatgatccccagtgcactccagcctgggtgacggagcaagacactgtctcaagaaagaaagagagagagaaagagaagggaagaggagaaggagagaa<br>gaaaaggaaaattaattgtaagggtattggggcctaactaaatgtagtgtaaatattaaattgcaactgaaatatcccataatgagtatgtatggttaat<br>gtatcttatgttagtccttatgtaaactaagcagcgttccaaaaatagactcaccaaatttgttctacttaatttttttgaaaagtctttgatagctctt<br>a	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	134707596	134707597	1001909	0	-	1104685450650	NA	NA	SINE	Alu	AluYa5	aaaattttatgctttttttgtgatgtttatgtgtcctttgtttactgtctttgtgctttacagtccataaaagtaatcaatctttattctgtcactcagt<br>taatgtttcttaagttaacatttatatcagaacagttttagattcacaaaaatattacaaagatgctacaagacagttcccatataccacacacccagtt<br>caccctatttattaacatcttacattaatattgacatttgttagaattaatgaaccaatattaactcattgttattaatccaagtcttaatttatttaga<br>ttttcccagtttttaacaaaagttatttttctatctcagcatcccattcagatcactacgttatattcaattgtcatgtctcctt<font color="green"><u>AAGATATTCTTTGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAGAT<br>ATTCTTTGCC</u></font>tgatagtttctaagtctggccttgtttctgatggccttgacagttttgcagagtatttgtcatttgttttgtagaatttcccttaattgt<br>tttttgtccaatgttcctcataagattaaactggggttatgtggttttaggggaaagactacagaggtaaagtgtcatttttatcacatgatattaaggg<br>tatatactataaatctgatttatctccattgatgttgaccttgatcacctagctgatgtagtgttgactcccattactcttttaaacataaagaaaagta<br>ggtgccaattgcataaacttaccttaagtacgcaaataaaaactaaatgtcaagataatttgaaggtacaatgattttttcaaatggtatattat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	86803526	86803527	1001910	0	+	1104685669338	NA	NA	SINE	Alu	AluYh9	cgtgatgcctccagctttgttcttttggcttaggattgacttggtgatgcgggctcttttttggttccatatgaactttaaagtagttttttccaattct<br>ctaaagaaagtcattggtagcttgatggggatggcattgaatctataaattacctcgggcagtgtggccattttcacgatattgattcttcctacccatg<br>agcatggaatgttcttccatttgtttgtatcctcttttatttcattgagcagtggtttgtagttctccttgaagaggtccttcacgtcccttgtaagttg<br>gactcctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgtttgttattggtgta<font color="green"><u>AAGAATGCTTGTG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCG<br>GTGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAATGCTTGTG</u></font>atttttgtacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagattgtgggctgagacaa<br>tggggtttcctagatatacaatcatgtcatctgcaaacagggacaatttgacttcctcatttcctaattgaatacccttgatttccttctcctgcctaat<br>tgccctggccagaacttccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgcttccagtttttgc<br>acattcagtatgatattggctgtgggtttgtcatagatagctcttattattttgagatatgtcccatcaatatctaatttattgagagtttttagcatga<br>agggttgtt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ARHGAP24:NM:001025616:2/10	
0	chr4	110141449	110141450	1001911	0	+	1104685674262	NA	NA	SINE	Alu	AluY	gtaaagtgttatataaaaagtgccagacttggtggctcatgcctgtaatcccagcactttgggaggctgaggcaggaggatcacctgaggtcaggagttt<br>gagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcatgatggcacaaacctgtaatcccagctactcaggag<br>gctgaggcaggagaataattttaaccccggaggcaaaggttgcagtgagctgatattgtgccactgcactccagcctgggcaacagagtgagactctgtc<br>aaaaaaaaaaaaaaaaaaaaaaaaaactatacacataacactttgtcaggattcagaaaaagggagaaattacacttagttaagggagag<font color="green"><u>AAAGACTTCT<br></u></font><font color="red">TCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAGACTTCT</u></font>taatagaagaagcagcattcaaatacaaaggggtatcctatttggatgtgtggaaactgagtgtgtctaaggattcggaggaaaggc<br>tactggaagaaaaggcaaaaagaaaaagaagatttgaagagaaaagaagtaaatggtttgatttggtttggtgaagcatagtctagaaagggcattaatg<br>aaaaattaatggtagattaggctagaaaacaggccagataagaggatctgaatgtcaagcaagaatctagattctattgtattctaaatgaaaaccatta<br>agactcaaggttttgaggtcagaagagtgacataatcagaactatgatatataattgtattaggatactactggttgatagtacactcaatcctaaatgc<br>ctg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:COL25A1:NM:032518:5/34	
0	chr4	119994184	119994185	1001912	0	-	1104685446812	NA	NA	SINE	Alu	AluYa5	ttacaccataggatagtcacaaaatggctattgcaatagcgtcagaccactctctgtacaaagtatggtatccagcctctttcctgcacatattccatgt<br>acacctaatctgtaatttcccacatttccccatgacactgctaattggcagcctggtagcctggcagcttcttacatattgagtcttgcagcacaggcca<br>tggcataattggctacaatgccaagactgtaggaggcaatgatgttgaatacttctcccgctacccctaagaccagaaggatttaactcaccctagccac<br>ttgagtccaaatgtacattgttttaccagttatgactctgcatactgtcctgaacaggaggcattaattattctgcagtt<font color="green"><u>AGAAAAGTTCTAAACTAGAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AG<br>AAAAGTTCTAAACTAGAG</u></font>gataggcttatctctgtctttatatgggttaagatgagagttctgttttctgaaccatagtctcacacttctgggtgaacct<br>agaatagaaattgcaattgccaagtttaggtccatcaaattcatgccgacattttgttgcaatgcttaatactacttatttaaatcaggagggggggaaa<br>tatcctaaatttgatggtatatgaagagaataaacataagtggggatcatcttgggcaaactgggtcataatgaaacacttacagcagtttaaattcaca<br>atggaaataaattcaattcaaatctacaaacatctgttgagaacctactaagccccagaacttttgctatgagctgaaaggaaaatacaaataggaat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	7204639	7204640	1001913	0	-	1104685099028	NA	NA	SINE	Alu	AluY	ctgcagtctcagctacttgggaggctgaggtaggagaattgattgaacccgggaggttgaggctgcagtgagctatgattgcaccactgcactccagcct<br>gggcagcagagtgagaccctgtctcaaaaaataataatcataattgtctttaccttgatggagcttatgttgaataataaagtttatattttttattttt<br>atcttttaattatattttccattaactttttaaaatcccctcatttaagagggttcttttgagaattaaatgaattaattaatgtaaatgcttataagaa<br>tgccaggcatttattaaacactgtataaacctcagctattattattaagatcatatatacttgtaagacaggtgattaacttgtt<font color="green"><u>AAAAGTAACTTGTGG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGGGATTGAGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAGTAACTTGTGG</u></font>agttccagattgctgataaattagcactgggaattaccgtattttatatacgtgccttgctatttttcagatctgggagaaagtaca<br>aaattcgtccaagaacaactttctaataacttattatgattgatagaatcttcttggaataatccagtggctgactagtcatctgaccaactgataaatg<br>caatttgtaatcaataacaagcatcctccagttgatgtaatttacaatgttatttgttagctggatgagtttggaaaagttacctaacctctctgaacat<br>ctgtaaaattgagatgtggtatgtggcatcacagatggacaattatatgaaaactgtagagtctggatgtggttgttcacacctgtagtcccagccac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	17745307	17745308	1001914	0	+	1104685545897	NA	NA	SINE	Alu	AluYa5	tttgaatggataaagtggccaatttcttactatttcttttgtacaacctttgcttgtttttaacctagactctttgctttgtgttgcttgctttgttagg<br>catggcaagtaatagaagatgtgggttctaattttagaagaaaattatccttggcaggcataaggaactagaaatttggtgctcagggagccaattttta<br>atcaaataggaaaatcaaaacatttgaatttaaaagtgtctgaattttctgcctcattgatttaagtttaagaagttggatgagctgaagatagtacatg<br>catagttcattggatttgggttgaactacttttacttagtatctgagacaatttatttttcatttaaattgtttttatctctt<font color="green"><u>CTTGTGTATATTTTTCT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAGAAAAA</font><font color="green"><u>CTTGTGTATATTTTTCT</u></font>aataaagaggttggatatggagcatcattaaaactaatctgcaaattaacacctgtatctctc<br>atggtgttcactgcaaataataatttccactctagctgtttacagcctaaagggatttattatgggatataaggttgcttatgtaatttcctggagtgtc<br>agataaccaagcgtgtatactgtgctatgacatgggactcttccagtggaatccactgttgccgctgtacctgcttcttggcaaccagaaaactagggac<br>tgaaccttaagaaaacctcttctgccaccaccatcacaggagaccacagaagagcttgaagcccatggtgccgacttccatcttccaagtctcagcggct<br>atatctgcttagtagatgtt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	34149027	34149028	1001915	0	+	1104685699835	NA	NA	SINE	Alu	AluYa5	cattaatttttaataataactaggcaatcacaataaataatcaaattcaagtcattaaatttgagttaactggttattcagcagtccatgaagtttggtc<br>ttttggcccttttctttcagtaatgcgggcataacacatggtgacagaggagcagcttggtaaccatgagacagcatgaatgaggacgaaagtcaactgc<br>tggaaattagagagggaaagacaaagataatctaattcaatgaggttatcatggagaccctccctcagtttcatgctttcttcccctagacttctgttat<br>ataagagataatccttcatgtttaagccattttcagttgatttttcaggatatcccatattttcccaataaaaagtaccta<font color="green"><u>AAAATATTTAAAGTTTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAATATTTAAAGTTTCTG</u></font>ctattggtaaccattaagtgatgccttgcttttgcttgtgaatataacctgcaagacctatttcaaaagcaagaatt<br>ctagaagcaggataataaaacaggaattatatcattcagtggatgagtctttgttttgaaacattagccagataccatgtggtcaccaggcagattcggt<br>gaacaagcatatcaaaatgacacattcaggcctataaagggctagtagaagattttgatactaaccactcctttctgtacatgaagatcaagtcagaata<br>tgttttgtttttctctttgtctcatttttaaccttctattgtcactctactgcagatagcaacaatatatatatcagagaattatcagttaatgaaccag<br>tacc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	14738944	14738945	1001916	0	-	1104685151889	NA	NA	SINE	Alu	AluYa5	ctggaatgtaagactaaaagaccctttcataaatagtaattctggtggtaccttctcaacctagagcaatcgtgtgaactaaggtggtttctacaaaaca<br>cagaaccacgattgggatgtaaattacttttcactgtgaccacagtgatggcgaactacatcactcactaagggtggagagggacttctcctcctcatct<br>tattagaataacaaatgaccacccacctaaaggctgcaccagcccactccgtgcccacactgccctgcgtttcggcaacatgtggcagttctgcagcaaa<br>accttcaattcagtctctcagatttatcacaagaacctcacatgccctcaagtggcaacaagctaaaattacaattgggcac<font color="green"><u>AAAGAACTACAAATGTGC<br></u></font><font color="red">TAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAG<br>AATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAGAACTACAAATGTGC</u></font>gaaaatactggctacacagatgtgagctgggaaatgaggtgaagggaagcccagaagaccggctgagcatctgggga<br>catgatacagttatctaaaaagtaggtacagtactcaactgaattactcaggagaccctgaagacctaactacacagagagaaacaattgtttctgattc<br>ccttcacacactggtcaaacagttcagggttgtagacttccaggaaatgcagaaatccttaagacaattttaaaaaatgaagcatgaaaaaagccatcag<br>aaaagaatgaagtcaaatttattcagaagaaaaaagtgaatacaacttcaaacgctttcagaggtcacagcacatggaacacacgtaaataacctttgtt<br>ttcca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FAM105B:NM:138348:4/7	
0	chr5	5648247	5648248	1001917	0	-	1104685098632	NA	NA	SINE	Alu	AluY	ccctctttaagggtatttattgtaaatttcattaacctcttatcttgttattgttttatttcttccatttagtatgttccactaatttttttctaattca<br>gactcaaggcttggttcattaatttgtcatctttcttcactatggatttgagacaataaagtttcctataggaatatgttaaactgagtcataagtgttt<br>tagtatgtaacatttatattataatttggttccaaagttcttaagttttattataatttattttttgacctatgaggtaaataaaagtgtgttaacagct<br>atttccaatccatgactgtttttatctgcatgttgtttactgattttcagtttttatattacagaggcaaagaatgtgttttctataatatt<font color="green"><u>AAAAAGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCGCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAAAAGTC<br></u></font>tctatattcagaaaagaataggactaaaaataatcacgtcatatcttcacagaccttgaagagtgcagggcaacatcagaatttggtaaagggtcaatgg<br>aactaacagaacaagccatgtcaggtggtgctctgagccagtcccaggacaagaccaggtaatcccatcatcactggaagcactaggaggatgccatctt<br>ataggcaaacattttaaataattattctccatgttgttctttttttttttttagttaacatattcaacacctcacacagttaccgttttttgtgtgtggt<br>gaaaacacttgaaatctactctctccgcaaatgtcaatatacagtacattttattaactatgtcaccatgctgtacattaggtcttcagtac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	186598918	186598919	1001918	0	+	1104685742035	NA	NA	SINE	Alu	AluYa5	tatcttttgtatcataaaaatagaacatagtaaattaatgttttaaaaaagtacacccagcaggatagatttaagaatcatatttatattaaaatgtaaa<br>agatttaactctgggttattttcaatttgtgaaatttgtgctatgtaatttcaaactctttaattcacagaaagcgaatgaagagcaccatcgtttactt<br>aaaggagcaccatttaagttaaatcttcacccaagggactattttgacgctaatccttatttttctgaggaatctttaccaccaattaaaaaagaagaga<br>agaagaaaacaatttcaaatacttttaaaccgtcttctcctggtaaaaaggtgagtttacaattttaggatgaaaaaattaagtatta<font color="green"><u>AAAGAAATACTG<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACTG<br>TGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAGAAAT<br>ACTG</u></font>tctcttgctatcaaatgattttttttcccatgtaaataataaacttttgttcgtatggataccaagaatcattggacccatttttacaaaattaca<br>tgaaatcaccaagtatgaatagtgtaggggataatgaagcccttgtcatgaagtaattattagtctcttcaaatgtatttgaatttataatttttttttt<br>tgagatggagtctcactctttgcccgggctggcagtgcagtggcatgatctaggctcactgcaagctccgcctcttgagttcaagcaatactcctgcatc<br>agcctccagagtagctgagattacaggcatgtgctaccatgcctggtgaattcataatgaatttttgaagtgcttctctagaccctaggtct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C4orf47:NM:001114357:5/7	
0	chr4	189552035	189552036	1001919	0	+	1104685743155	NA	NA	SINE	Alu	AluY	ctacacgttgtatggtctccccatatattaaatgttagtattttattttattttataaaacgaaataaaaatagataaagttggccaggcgcggtggctc<br>acgactgtaatcccagcacttctggaggccgaggcgggtggatcacgaggtcaggagatggagaccatcctggcgaacacggtgaaaccccgtctccact<br>gaaaatacaaacaaaaaaaaaagaaaaaaggaaa<font color="green"><u>AAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAG<br>AATGGCGTGAACCCAGGAGGCAGAGCCGCAGTGAGCCGAGATTGTGCCCCTGCACTACAGCTTGGGCGAAAGAGCAAGACTCCGTCTCAAAAAAAAAAAA<br></u></font><font color="red">ATAGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAA<br>CACGGTGAAACCCCGTCTCTACTAAAAATAC</font><font color="green"><u>AAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCAGGAGGCAGAGCCGCAGTGAGCCGAGATTGTGCCCCTGCACTACAGCTTGGGCGAAAGAGCAAGACTCCGTCTCAAAAAAAAAAAA</u></font>aaa<br>aaaaaaaacaaaaaaaaaatagataaagtttctcatattttcttctacacctcaactgattgtctttctcactctccttgagggccacatttagtctgct<br>tgcaggtgctaacacggggaatgatgatttggtcagatgcatgttttcaatcactcctcacagtggaagataagagttgagggatgcaggattcaaggag<br>ggaagtgtaggaaccaagatattatgatgga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	1638518	1638519	1001920	0	+	1104685336157	NA	NA	SINE	Alu	AluY	tactcggtgtcctccagcttagttccaagttttctgtcgctccggtgacccttcgacctggattcgagcccccatgtgtgggcgccacttgctgagacca<br>gctcggttgtggagaccctaacccagcggcactagaggaattaaagacacacgcacagaaatataggatgtagagtgggaaatcaggggtctcacagcct<br>tcagagttgagagccttgaacagagatttacccacatatttattgagagcaagccagtcataagatttactaaaagtattccttacgggaaacaaaggga<br>tgggctctggctagttatctgcagcaagagcatgtccttaaggcacagatcgctcatgctattgtttgtggtttaagaatgcctt<font color="green"><u>TAGAGAGGGTCTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACCCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCCCAAAAAAAGATATCTAA<br>CTAAAAAAAA</font><font color="green"><u>TAGAGAGGGTCTCTT</u></font>aacaaacaaacagctctcccctctcccctctttccacggtctccctctgatgccgagccaaagctggactgtact<br>gctgccatctcggctcactgcagcctccctgcctgattctcctgcctcagcctgccgagtgcctgcgatggcgggcacacgccgccacgcctgactggtt<br>ttcgtgttttttgggtggagacggggtttcgctgtgttggccgggctggtctccagctcctagccgcgagtgatctgccagccttggcctcccgaggtgc<br>cgggattgcagatggagtctccttcactcggtgctcaatggtgcccaggctggagtgcagtggcgtgatctcggctcgctgcaacatccacctcccagcg<br>gcctgccttg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SDHAP3:NR:003263:3/7	
0	chr4	179435323	179435324	1001921	0	-	1104685739558	NA	NA	SINE	Alu	AluYa5	agatgaaactaaaagagttcctgatgctctattaaggttatcaaagagacctggcaatacccatagaataaaagtacttggatttgagggtattatactg<br>agtaaaactaaccattacccccatctgccaactctgatagttaatcataaatacttgtgtgtgagtgcacctatgcatgaactccccctaacccccacca<br>ccactctctctctctcactgtcacacacccctacaccacacacacactcattacatcaacaaataaaaattaagcactttctgtattctaggctctgtgc<br>aggtaaaggataatgaaaaacaacttgtgccctgaagggctgatagcacaaagaggtgagaggcatgtaaaaaatcattttt<font color="green"><u>AAAGAAGGGATGACCATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAATGG<br>TGAAACTCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAGAAGGGATGACCATG</u></font>cgacacgcattcagatagcgcagaagtagaaagtagggttttgaaatttcttaagggtgttggtgagttttacaaaaa<br>ataagtgtccatgtgtgtctttaaatgaggaaaaatgcgaagtcattttaaattaaacattctgggagaaaaaaaaaacaattgtgggtgtcaggtcaga<br>aaaagcttccatggaaatagaatagtgttcaatgttctgagtagacagctctataagctgaaaacattggctaaattaattacttctgtgaattctaaga<br>tagagtatatggcccaaagccagtctcaaaatagtcaattttattcttttctggttttaaataccttaattattgcctttattattttctactttcttat<br>ttta	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	164977095	164977193	1001922	0	+	1104685735312	NA	NA	SINE	Alu	AluYd8	cttctttttataatgccaaaaattgtcatggagccctctagaataaacatctttccatgtaagtggaaggagctggctttatagtgacccatcttcagat<br>ccttacctacatggtagttgcaatttatttatttatttatttatttatttatttatttatttagagatggagtctcgctctatcatccaggctggagtgc<br>agtggcacaatctcggctcactgcaaactgcgcctcccaggttcacgccattctcctgcctcagcctcctgaatagctgggattacaggcacccgccacc<br>acgcccggctaattttttgtatttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccgccagcct<font color="green"><u>NNNNN<br></u></font><font color="red">TNNNNNNNNNNNNNNNNNNNNTGCCTTGGCCTCCCAAGTGCTGGGGATTACAGGCGTGAGCCACCGCGCCCGGCTAATTTATTTTTTTGATACACATTTA<br>CTCTACGTTATATTTCAGGGCTTGTTAAAAGATGCCTCCTAACGGTGAAACCCCGTCTCTACTAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGC<br>CTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGTGAACCCGGAAGGCGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCAGCCT<br>GGGCGACAAAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>atgcctcctagtctctctgctgtgaggaagaaagttctaccttta<br>gaataaagtagacaaaataaggaaacagagggtccatctggccaaagctgagtaatagaagctgtagtcatcagcagaggtaagtgtgacccccaataaa<br>cagtgataccaagtgcgccgccattggcagcaaagagcactgagtctgcttgatgacaggactacaatagaagaattattcctgatctcatgtgagttag<br>cccattagccccctggaagcctcacagagtaactggagaaaaatttgaggaggtctaattttaagtgaccaagttgaagcagaagccattctaatgtgaa<br>ttttaataattgctcgtatataatacaggactgaattagagaaatagaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	175448163	175448164	1001923	0	+	1104685738234	NA	NA	SINE	Alu	AluY	gtagagatggggtttcaccatgttagccaggatggtctcaatctcttgacctagtgacccgcctgcctcagcccccaaaagtgctaggattataggcgtg<br>agccactgtgtcctgcctctttcttcttcttaatgaatttattgctataaacacttctcttattctgcttttactgcatcctatatgtttgggtatactg<br>tgttttcattattgtttgtcttgagatattttataatttctgttttgatttattctttgacccagtattatttaatagtatgttatttaattcccctgta<br>tttgtgaatttttccattttctttctattattgatttctagtttcattccctcgtgatcagacaaaatgtttagaatgtttttagtcttct<font color="green"><u>AAATTTGTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCCAGGGGGCGGAGCCTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAATTTGTT</u></font>aagacttgttttgtgacctaggctgtgatcagttatagagaatgtttcatgtccttttgagaagaatgattattttgctatggttg<br>ggtctcatgttctgtatatgcatgttaggtctttggtctatagtgttgtatagtttgcaatttacttgttggtattctgtccggatgaccagtacattat<br>agacagtgacgtatcaaagtctccttctgtattgtattgatatctatttcttcctccaattctatcaatatttgctgttggcattctgtctggatgacct<br>gtacattatagagagtgatgtatcaaagtctccttctatattgtatcgatatctatttcttccttcaaatctgtcaatgttcactgtatattttaaggtg<br>ctttg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:KIAA1712:NM:001040157:1/12	
0	chr4	176518831	176518832	1001924	0	+	1104685738571	NA	NA	SINE	Alu	AluY	cctaacctatagaataaaggttttcaatgatttctatgtataaactttccctggagtaactgatatcatgtagtcctatttctattcacagagtctgatt<br>tagtcattatggaatagaacccagaaatatgcatttaaatatttgttatgcttctgatgcagttgtttcctggttcagcatgagggaaaaaaagggaggc<br>tgaaaaaggtattgcatagttatatgtgtaatcccttatattaaaaaaaagaaaactaagaatcaacagaaaaaaagtgacaaaaaaaaaaaagagcctg<br>gagaagcaagcagggatcaaattctgctggatcttgtcggctacaataagaatttgggactttttctttacaatcataggaaggca<font color="green"><u>AAAAGGCTTTAGGC<br></u></font><font color="red">CCCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGC<br>TGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTC<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGGCTTTAGGC</u></font>ataattgatatgactagttatatgttgtagaacaataacaaaaaaac<br>tggttgtagagtagagatttgttttcaggaagaagactgaacaagaagggtctggttaatagtagcagttgtagtattaagaaactatggtaattagaaa<br>taggatggtgatgatagagataggaagaatatggaattgaagggaatgtagaaaggaaattagtgagtacctggtgatgtatacgatgtggaaggtggta<br>aaagttagagaaatgtcagggtcagtttagccaaccgtttccagcctgtctgtttatggaagatggagtccatcacagccaatgagaaacactggagtag<br>agcctggctttcgggatgatgggtggaagtgggaggatc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	167558244	167558245	1001925	0	-	1104685736046	NA	NA	SINE	Alu	AluYa5	gatataatagattttataaaaagtttcatccaacagctgcagaatacactcttctcctcagtacataaattattctcaaggataaatgacatgttaggca<br>acaaaacaagtcctgaaatactcaaaaagtttgaaataatatcagtcatattctcgatcataagggaatacaattaaaaatgagtaaaaataggaatttt<br>gggaattatacaaatacatggaagttaaataatatgctcctgaagaaacactggatcaaagaagaaattaagaaaaaaatttaaaaattacttgaatcaa<br>atgataatagaaacacaacatacaaaaacctataggatacagtgaaagcagtactaagaggagagtttacagctataaactcctgcatt<font color="green"><u>GAAAAAGTAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAAAAAGTAGA</u></font>aaatgtcaggtaaacaacctaataataccttttaaagaactgaaaaagcaacagcaagccaaacctcaa<br>attagtagaagaaagacataataaagatcagagcagaaataaatgaaatggagatgaagaaaacaatataaagttcactgaaacataaagttgtcttaaa<br>ataaacaatttaaaaaatcaacaaatctttggccagactaatgaagaaaaaaagagagaagaccccaaaacttacatcagggatgaaaaaggagttatta<br>caaccaatacaacagaaattcaaaggatccctagaggctactatgagcaactatgtatcaataaactggaaagcctagaatacatggacacattcttaga<br>cacatacaacttagcaagtt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	123914726	123914727	1001926	0	+	1104685719650	NA	NA	SINE	Alu	AluY	atttatccagagctgacaaagtccacagtctgaagcctgctttattatttctccctagtttaggtaaggtaataatccccagatagtcacagtaccttct<br>gtctacctttcttcttgtcacattttctccttaaagatgttttagtataataatgaattgctatccacagtaaaggtgcttcatcataattttgcttcat<br>gctgaatttgtaaactggccacagtcattgacgggcagtctgtaacagcaataaaacagagttgctacggaactgactcaaggtcaaaccctcagtgttg<br>ggaagtacaaaaacactgcctctcagagaatgctgtttcttattgtttcatgtttaacacgataaaaggaaaggacaccaggcat<font color="green"><u>CAAAAAGTCTCTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAACAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>CAAAAAGTCTCTCTT</u></font>aaccaagagttttttttttaaataaacatcttaatcaaacaaattgggaaacaattttcctgtggcttt<br>agacagagccccaaaaatggagggcagagggtacctcaagaaactaaaggaatggattccagcatggtcagctcgtgacagtcattcctgttagactagc<br>acctgcagatgagagttttattggaaacttctcttcagcccaatgtcccacacaaacaagagggttttgtttgtttgatttgtttaggctgctatgttat<br>gttccatgaacaaaatgatcttttagaaatatcatggaggccaatctttttttttttttttttgagacagtctctctctgtcgcccaggctggagtgcag<br>tggcgtgatgttggct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	133790824	133790825	1001927	0	-	1104685717269	NA	NA	SINE	Alu	AluYa5	tttagatacttctgtaagagctgaagatcccaaagtttgaaaacttttagcgttttccaactttcctctgaaaggctggaaaccctgctccaagagcact<br>ctctacttaggt<font color="green"><u>GTGGCTCACGCCTGTATTCCTAGCACTTTGGGAGGCCAAGGTGGGTGGATCGCCTGAGGTCAGGAGTTCGAGACTAGCCTGGCCAACA<br>TGTTGAAACCCCATCTCTACTAAAAATACAAAATTAGCCAGGCATGGTGGCAGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCT<br>TGAACCCGGCAGGCGGAGGTTGCAGTGAGCCGAGATTGCGCCATTGCACTTCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAAACCTAAGT<br></u></font><font color="red">A</font><font color="green"><u>GTGGCTCACGCCTGTATTCCTAGCACTTTGGGAGGCCAAGGTGGGTGGATCGCCTGAGGTCAGGAGTTCGAGACTAGCCTGGCCAACATGTTGAAACCC<br>CATCTCTACTAAAAATACAAAATTAGCCAGGCATGGTGGCAGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGCA<br>GGCGGAGGTTGCAGTGAGCCGAGATTGCGCCATTGCACTTCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAAACCTAAGT</u></font>gcctctggcct<br>ccatttagtattttctcggcacctgcattttcagtttttcctcggcaggaagggcaagaataaaactgcttctccagttcatttggctgtattagaacag<br>t	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	130881158	130881159	1001928	0	+	1104685717984	NA	NA	SINE	Alu	AluYb8	tgctcactatctgggtgatgggatcattcgaaccccaaacactcagcaccacgcaatatactatgtaagaaatctgcacatgtacccccctgcatctaaa<br>ataaaagttgaaattatttttaaaaattggggagacatccatttttctggataagaagactccacgttagaaaaaaatgcccaaattaatctatatatag<br>tcttctgccccacaaaaaaagctggatttcacttgaaacgtttctaaatttctagaagaataaaagcagaaacactaaaaaaaaattgctgttaggatat<br>cttcccctcaactgtccaaattaaaaatacttctatcatttcacaaggcttttcttatggtgttaaaggctaggtgttcactt<font color="green"><u>CATTTGAGAGATTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>CATTTGAGAGATTTTTT</u></font>taaaattcaaataactagacaaatcacttcagctatcccaggctaagatacatacattggcaatgtac<br>acctgtaactaaggggtatattcatagctccaaaagggaatctaaaggcagcctaaggtgaaaggaaagatcaagggtccagtactgatatttaattctt<br>ctccttgtttattcccgaggatctgattggaaacattcgcgcatgtacacacacacacacacacacacacaaaatttagttagacatttctcttacccat<br>ggattaaaattatagaaatcttgtactttggagggtatatcttatcaatctattataattctgtgtttattccttttactctcctttaaatattttccaa<br>tttttttttcaactt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RAPGEF6:NM:016340:7/28	
0	chr5	91066782	91066783	1001929	0	-	1104685647738	NA	NA	SINE	Alu	AluYa5	ttaagccttcacctctgcctccaattggttctttgcactatcatacctctttctgagtagtgctttctccatgacagcctgaagaccaatcagcacactc<br>ctccctcttcccagtccatgaaaaccttggactcagcctcatagctagcaaacctctttagggtcccctgtctttgctgagagcttttctgtcacttaat<br>aaatctgactctgccttactctctggtgtccatgcacatttttcttcttggttgtgggacaagaacctggagcttaccactggtgggagtgaaagagctg<br>taacactccctcccagtcaccaaacaacacgattgagaaagctgcaacacaattggactaggcaaaaagacaaggtgttgatttactatt<font color="green"><u>AAAAGTTCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAGTTCCC</u></font>ggtagataagaactctggaactcagtgtcttcaagatattcatcacttattatgtggtggcaaatatgggcaacagtggctttat<br>tgaacttactagtactctaagtagcttaggcaaaagttctagagttctgactgttatagtttgtgtcacatacccatgttatagtttgtgtcacataccc<br>agtcctgacttaatcaaagtggtgcccagggtaacataatgtatccactagacaggtctgagaatttcaccagtctgcgggcaggggctggggtcagccc<br>cacctcaaccatatgaaatcaatttgatccaccaaaagaaacattgacaccaacaagatgaacataagagagaaataatttttaaaaacacatggaaatt<br>gatat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	114767636	114767637	1001930	0	-	1104685721654	NA	NA	SINE	Alu	AluY	cctctcacattgccttactcctcttaccaggccatagtagataacatggatcctcaaatctcactaatgaatctaaaataatggctttaacatagctgct<br>cagattacacacactatcagagtattttccctttaagataggatatcagtgaacactacaagtatcaacttttttgttataaaaatttcttcagcaatcc<br>caattactttcctagtcctttttaatctgtcatataaagcctttttattgttacacctattcactaattatgactgctattttgctcaaagaaatattcc<br>cccaggcatacatctatttctatttcctaatgacaaagtatgcttattttatgtagtgtcacaatattattttattgatgctgctt<font color="green"><u>TAGAATGTTTTTTT<br></u></font><font color="red">AGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTA<br>AAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGC<br>CTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAA</font><font color="green"><u>TAGAATGTTTTTTT</u></font>attgtcattcatcaaggc<br>atattgcacacctagatcaaaaagagaaccagcaagcacacacatttcttaacctaagtaacatctgaaaacgtaagacttagacttcagttacattttc<br>cactgaagaaaatccatacaactttggtgcctatccaagaacttataatgtcaatttctaacatacgttataacccccagtacacgtgtattttcagaag<br>aaagcaagtcatagcaaatcaaatttttcccaaatgctatttggtatatttttatagcaaattaaaaatttttgaatatgaaaactgaaggtggccaggc<br>acagcagctcatgcttgtaatcccagcactttgggaggctgacctgggaggatcacttgaacccaaga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	100525162	100525297	1001931	0	-	1104685724588	NA	NA	SINE	Alu	AluY	tataaaaaagctcaatatcactgaccattagaaaaatgcaaatcaaaattacaagataccaactaacaccagtcagcatggctattattataaagtaaaa<br>aaaaaaaaaaatactgatgctggtgaggttacagggaaaaaggaacacttcaacactgttggtggaaatgtaaattagctcaaccattgtggaaaacagt<br>gtggcaattcctcaaagacctaaaaaccaaactaccatttgacccagcaatcacgttactgggtatacctacaaagaaataataaaatattctattataa<br>aaacacatgaaaacatatgttcattgcagcacttttcacaatagcaaagacatggactctacttcaatgctcttcagtggttgactagataaaga<font color="green"><u>NNNNN<br></u></font><font color="red">CGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCTGGGAGGTGGAGCTTGCAGTGAGCCGAGATCGTGCAACTGCACTCCAGCCTGGGCCACAGAGCAAGACTCCGTCTCGGGAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>aaatgcggtatatatacactatggaatatatgcatccataaaacagaatgagatcatgtccttttcaggaacatggatgt<br>agctggaggccatcatccttaacaaactaacacagaaacagccagtcaaataccacatgttctcacttataagtggaagctaaacaatgaaaacacagag<br>acacaaggagaggaacaacagataccagggcctgcttgagggtggagtttgagaggaaggatagggccagaaaaaataactattgcctattagggttagt<br>acctgggtgataaaataatctatacgacaatcccccatgatatgcatttacctatgtaacaaacctgcacatgtaccccttaacataaaataaaagttaa<br>aaaagaaatacaaat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	109273863	109273864	1001932	0	-	1104685722788	NA	NA	SINE	Alu	AluY	acagcaggcattttctgattccataaggaagacctgatgtccttatgcatcaaaagttaaacatgacaaagagattttcaaagaaatttagatggtatgg<br>tgaattaataagattttttaaagtcactatgaagcatctactatatgctagtcttatttcagatgctgaggatacaacagtaaacttcgttttcagggaa<br>cttacctttacttggaaagactgagaaaacaaaaaacaaaagcaagttaaaaacaaaaaataaatgatgtaactttagacactaatagatgctctaaagg<br>aaaattaatcaagttgagagattgtggcgacacagcagggactcaaggaccattttaggtcagatggtcagggaaggactctgga<font color="green"><u>ATTTTGAAGGATTTT<br></u></font><font color="red">TTGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>ATTTTGAAGGATTTT</u></font>ctggaagagaaacttcaggcagaggaaacaggaattgcaaagagcctgagaagaaaataagcctggcatgtttaagg<br>aacccaagaaagctcagatgaccagaacagaatgtgtaatggggacaaaaatagaaaataaaattaaatctgatgtgagatttattggccagtgtaaaga<br>atttgagttggaggattttgaatgagaagtgaaagaatctctttgagattttaaaagatctttgaaggtgatgtgtggacactggattttgggcagtcta<br>gagtgaaagcaaaatccattacaagactttcaccctagtccaaatgagagatgatggtgacttaatagaatgatagaataggatattaatgacttaatag<br>aatgatca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	54765051	54765052	1001933	0	-	1104685094704	NA	NA	SINE	Alu	AluYb8	ccggcctgacctcttgatttctttctctgctaattcactattgttgtatagaaatgctagagatttgggggcatggtgcctcacgcctgtaatcccagca<br>ctttgggaggatgaggcaggagaatcatgaggtcaggagatcgagaccatcctggctaacacagtgaaaccgtctctgttggaaatggaaaaaattagcc<br>aggtgtggtggcacgcgcctgtagtcccagctacttgggaggctgaggcaggagaattgcttgaacctgggaggcggaagttgcagtgagccaagatcgt<br>gtcactgcactccagcctgggtgacacagtgagactcggtcaaaaaaaaaaaatgctagagatttttgtatgttgattttatatccttt<font color="green"><u>AACTTTACTGA<br></u></font><font color="red">GTGGCCGGGCGCGGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCTCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAACAAAAA</font><font color="green"><u>AACTTTACTGA</u></font>tttatcagatctaagagttttttggtagagtctttaggtttttctacatataagatcatatt<br>gtctgcgaagacggacagtttgatttcctgttatacaacttggatgcctttatttcttttctttttttcttttcgagactgggtctccctgtcacccagg<br>ctggagtgcagtgacacgatctcagctcactgcaacctcattgtcctgtgcttaagcagtgatgctcccacctcagtttcccaaatagctgggaccacag<br>gcacatgccaccaatcctggataattttttgtatttttttttttttttgtagagatggggtgtcgccatgttgcccaggctgttgtgaactcctgacctc<br>aggcgatctgcccgccttgaccttccg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PPAP2A:NM:003711:4/6	
0	chr5	55725253	55725254	1001934	0	+	1104685095043	NA	NA	SINE	Alu	AluYb8	attcagcatcccttcatgttaaaaaaaactctcactaaactaggtattgaagaaacatacctcaacataataagagccatctatgacaaatccagagcca<br>acattaaactgaatggacaaaagcctaaagcattcctcttgaaaactggcacaagacaaggatgccctctttcaccacttctattcaacatgttattgaa<br>gtcctagccagagcaattaggcaagagaaagaaataaagggtatccaaataggaagagaggaagtcaaattatctctctgtgtagatgacatgattctat<br>atttagaaaaccccagagtctcagctcaatagctccaccagctgataaacaactttagcaaattttgggatacaaaatcaatgta<font color="green"><u>AAAAATCACTAGCAT<br></u></font><font color="red">TCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAA<br>AAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACCTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGA<br>GCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATCACTAGCA<br>T</u></font>tcctatacatcagcaacaaccaaactgagagccaaatcagacaggcaatctcattcactattgccaaaaacaaaataaaatacctaggaatacagctaa<br>ccagccaggtgaaagatctctacaatgagaattaaaaagcactcctcaaagaaatcagagaagacacaaacaaatggaaaaacaccccatactcatgaat<br>aggaagtatcaatatcattaaaatagctatattggccaaaccaatttacagattcaatgctattcctatcaaactaccaatgaaattcttcacataacta<br>gaaaaaattgttttaaaatttatatagaaccaaaaaaatagcccaaatagccaaagcaatcctaaacaaaaagaacaaagctggcg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	40217415	40217416	1001935	0	-	1104685203503	NA	NA	SINE	Alu	AluYa5	ggtgagaacatgcagtgtttggttttctgtttctgtgttagttggctgaggatgatggtttccagcttcatccatgttcctgcaaaggacatgaactcat<br>tcttttttatggctgcatagcattccatggtgtgtaagtgacacattttctatatccagcctatcattgatgggcaatttgggttggttccaagtctttg<br>ctattgtgaacagtactgcaataaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttgggtatccacccagtaaagagattgctgg<br>gtcaaaaggtatttctggttctagatccttgaggaattgccacactgtcatccacaatcattgaactaatttacattttgaccagtggtgt<font color="green"><u>AAAAGTGTT<br></u></font><font color="red">GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAGTGTT</u></font>ctatttctccacatcctctgcagcatctattgtttcccgactttttaataatcaccattctaactggagtgagatcctttctcattgtggt<br>tttgacttgcatttctctaatgaccagagatgatgagctttttttcatatgttcattggccacataaatgtcttcctttgaaaagtgtctgttcagatcc<br>ttcacccacttttatggggttgtttttttcttgtaaatttgtttaagttccttgtagattctggatattatccctttgtcagatggatagattgcaaaca<br>gtttctcccattctgtaggttgcctgttccctctgatgatagtttattttgctgtgcagaagctctttagtttaactagatcccatttgtcaattttggc<br>	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	41018182	41018183	1001936	0	-	1104685203669	GAGTCAACCACCACAGATAGGA	CCTGTGACCACAGCATAATGA	SINE	Alu	AluYb8	caaaagaaaaaagaacaggggcaaacttccagtcctatgtttgacacatactaaaaccccaaagagaagactgaattgtatttgttctcagacaagacac<br>ccctgtgaccacagcataatgaattctgctctaacattttagtggttcaatctcccgacaagagtaagtattccagccaggcgtggtggttcatgtctgt<br>aatcccagcactttgggaggccaaggcagacggattacctgaggtcaggagttggagacgagcatggccaacatggtgaaaccccgtctctacta<font color="green"><u>AAAAA<br>TGCAAAAATTAGCTGGGCGTGGTGGCGGGCACCTGTAATCCCAGCTGCTTGGGAAGCTGAGGCACAAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAG<br></u></font><font color="red">TGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGCAAAAATTAG<br>CTGGGCGTGGTGGCGGGCACCTGTAATCCCAGCTGCTTGGGAAGCTGAGGCACAAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAG</u></font>gagatgagatca<br>ccccactgcgctccagcctgggcaacaaagtgagactctgtcttaaaaaaattaaaaaaagaataaggaattcctatctgtggtggttgactctatagga<br>tgaagtgtgagattactactcaggatagaaatagtttgtatctgtcatttttgttcaagtcctctttatatttggttccattgaggaaaaccaccctctc<br>taatcaggagatcacgttctttctgttatcctagtcattttgtagagtgtgttctggcccatgggctgtgtcaatcatactta	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	592	405	NA	exon:3UTR:C7:NM_000587
0	chr5	57751982	57751983	1001937	0	+	1104685095552	NA	NA	SINE	Alu	AluYb8	gatctaaccctagttaagttttcaggtgactacagcactgaccggcagtgtgactgcaacctcatgagttaccctcagccaaaatcatccagctcaacct<br>ctcctggattcctgacccaccatacactgagtggtataatcagtgtttgctgttttcagctgcttagttttagattaatgtgtttcatagcaataaataa<br>ctaatataagagacaagagtagaaacaggatgatcaggcataaagactattgcagtgatccagggaagagatggttataaatattaattaagataaatga<br>gaagattatagatttgctttaagaaaagcctggcctgatatatcagtatatgtgaaaggacctggaaaacctcaactctctccatg<font color="green"><u>AAGATATTGGTGTG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAAGCAGAGCCTGCAGTGAGCCGAGATTACGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATATTGGTGTG</u></font>atttgggggcagaaaaagtccactgaagcttcaccaaaacgtaagagtgacaa<br>cattgatcagaaattgattcttctgctctttgcgctgagtaggccattcttggagcaattagtccaattctgggtgatacacttacaatagagattaaga<br>aacaagacctcatgcagagaatgctctagaattgtagagtggcagctcaagctgggtgatgagaggggtcacatggaaaaaagtgggtggagtttttcga<br>tcaagtgttcaatgtatggggggttgggtgtcaaggatggctttgagctttcagactaacacaactggttggaaaggttagtcactgagaaatggaataa<br>taaaatcggtctgggaattaggcaagaagatca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	58291565	58291566	1001938	0	+	1104685095657	NA	NA	SINE	Alu	AluYa5	cttgctctgtcacccaggctggagtgcagtggcacaatcttggatcactgcagcctccacctcctgggttcaagtgattctcctgcctcagcctcctgag<br>tagctgggattacaggcatgtgccaccacacctgggtaatttttgtatttttattagagacagggtttctccatgttagccaggctggtcttgaactcct<br>gacctcaggtgatccacctgcctcagtctcccaaagtgctgggattacaggcatgagccaccatgcccagctgagctgtttgtatttaatattggcatac<br>gtcttcgatatgaacaagttcattgtatattatttagggaaataaagctgttccagtgaggggactacagtcagtgcaaaaatttt<font color="green"><u>AAAAAAAAATATGG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAAAAAATATGG</u></font>aaagtattttgtcctacatgttaggcactgaaattacggttactaaatgagagggaaatttgagatttaaaaaaaaagaaagtaaa<br>ggaaatcccctaaataatgccttgcaaactgatagctgacatagaataaaaaactgaagcaacaatcaagttaaatattctcttccccaagggacacagg<br>gcactttagagacaaactggctatgttcccatatcagccttgacatttttactggacaaccttatccttccagcctcttttgacctctctgttaaatgaa<br>gggaatattgggttgatgtagagttgaaatgagatagcaaaaggtgtgatgcagtcttagtgatcattcttcccctggattccttcctcttccattcccc<br>	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	43429563	43429564	1001939	0	-	1104685204236	NA	NA	SINE	Alu	AluY	ttctgttatggaaagaacaatcctgccaatgaaagattcctctgtaccaatacagaagagaaaaaaaagtattactgagtaagcattaacacatttacaa<br>gcatgtacggcagcacaaaagtgactatgaaattggaacagaattttatatagcatagcagaagaaagaataacttctcacctcctcaaaagataaaagg<br>gtcacaccttgtgacagtttctacacgtcttgtgagagaccctgagctaaatccagaggtgtttttaaaaatacatctggaggttatttggcccttggcc<br>ttggatatatatagctattattacaaaaactgaagagtgggcttaatccttgtagagatttatctcaatccaaaagtaaagatt<font color="green"><u>AAGATACACTATGTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATACACTATGTCT</u></font>taaagaacctcatcttaagaatggaggaaaggaggccgggcgcggtggctcacgcctgtaatccca<br>gcactttgggaggctgaggtgggtggatcatttgaggtcagaagttcaagaccaacctggccaacatggtgaaacctcacctctactaaaaatacaaaaa<br>ttagctgggcatggtggctggcacctgtggtcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccga<br>gattgtgccactgccctccagcctgggcaacagagtgatactctgcctcagaaaaaaagaaaagaaaaaaaaaaacggaagaaagggatgggtgtggtgg<br>tagctcatgcctgtaatc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CCL28:NM:148672:1/3	
0	chr5	43553681	43553682	1001940	0	-	1104685204267	NA	NA	SINE	Alu	AluYb9	taggctgtagaatggatgctgcgttagcagacatgaaaacaacattaatctccttgtacgtcatcagagctcttaggtgaccaggtgcattgtcaataag<br>tagcaatattttaaaagaaatctatttttctgaatgtcattttcaacagtgggcttaaaatattcagtaaatcatactctaaacagatgtgctgtcatcc<br>aggctctgttgtttctggagtgcaggcagagtagatttaacataattcttaagggccctaggattttgaaatgagaaatgagcattggtttcaacttcaa<br>gtcaccagctgcattagaccttcacaagacaatcagcctgtcctttgaagctttgaaaccaggcattaatttctctctggctat<font color="green"><u>GAAAGTCCTGGATGAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACCGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAG</font><font color="green"><u>GAAAGTCCTGGATGAC</u></font>tcttccactagaaggctgttgcatctacattaaaaatccgctgtttaatttggccaccttcatcaatg<br>gtcttcgttagatcttctggataacttgctgcagcttctacatcagcacttgtggcttcaccttgcccttttatgttacagagatggcttctttccttaa<br>atttcatgaaccaactactgatagctttaaacttttcttcaactccctcacctttctcagccttcatagaatcgaagagagttagggctttgttctggat<br>taggctttggtttaagggaatgttgtagctggtttgatcttctatccagaccattcaaacttcctccctgtcagtaataaggctgttttggtttttctta<br>ttattcatgtgttcac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	18578142	18578143	1001941	0	+	1104685175261	NA	NA	SINE	Alu	AluYa5	aaatgctgccaagtgtcaaagccatttgttctgtacaataaaggttggactaaacgctaaggtcagttctaaccttccaaaagtctgctagaggcatgtg<br>tttccttgttatgattttttaagaaaggatttaagagtgttaaggtcatttccatttgaattagtattcgaggcaggtcttaagttgggtgccaaagatt<br>acttaacaactagagcttgtgtttccataaaaccgaaagctcactctcctgtactggtgttgaaacctttttattgaaggctggatgcttctaaaatggt<br>acctgcatacaaaggtttacaactgatgtacaattcaaatttcattttctaatcattcagttttgaggaaatcaataagatcatt<font color="green"><u>AAAAATACTTTTGGG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAAATACTTTTGGG</u></font>ttatggtttcttaattttcttaatcatctcctagaatgtcaacattatttcattttgaaagtgtgcttatt<br>gtttgctaaccttgaatttgcattcccaaagaaatattgaatgaaccattttatatagcagtgattttaatcagtgccctaaccagcaaactcattgcaa<br>tttaagttatgaatctgatgatttggaggagaataataattaggtttttctgtaattcaattattttcatttgttagataataaatctagttttctttag<br>accctaaagataatgcccaacactatgagaaaaaggaaacgaatctgcttaaatgcgttaatagcaattataatgttttatttgtatatttttacgtaaa<br>ctaaagaacttttg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	19007346	19007347	1001942	0	-	1104685175441	NA	NA	SINE	Alu	AluYa5	cttcaacagaaatgttgcaaatgtcttcttgcaaccaagcatccaattctaatttaaataattcatagctgcatactattaaaagaatgacagtggctgg<br>gtgcagtggctcacacctgcaatcttagccgaggcaggcaaatcatttgaggtcaggggtttgagaacagcctggccaacg<font color="green"><u>TGGTGAAACCCTGTCTCTA<br>CTAAAAATACAAAAATTAGCCAGGTGTGGTGGCACACACCTGTAATCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGTGGAG<br>GTTGCAGTGAGCTGAGATCGAGCCGTCCAGCCTAGGTGACAGAGTTAGACCCTGTCTCAAAAAAATAAAAAATAAATAAAAAATAAAAATAAAAGAATGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAT</font><font color="green"><u>TG<br>GTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGGCACACACCTGTAATCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTT<br>GAACCTGGGAGGTGGAGGTTGCAGTGAGCTGAGATCGAGCCGTCCAGCCTAGGTGACAGAGTTAGACCCTGTCTCAAAAAAATAAAAAATAAATAAAAAA<br>TAAAAATAAAAGAATGA</u></font>gttagaggaagagttgggattgaaagtagcaaacatgaagttcttttgttttcttgcccttttcagccaatgaaaccactcca<br>ttctcccatttctaggtttcatctttcaaacaggaaataacctgtagtactgtttaataactcatagcaatagtaataatggtaacagtaatgttgaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	2719017	2719018	1001943	0	+	1104685483937	NA	NA	SINE	Alu	AluYa5	aatatgtgaaatccagtatttcacctcctagatgaggggatgcggagttgagttttgaaggataagcagaatttaactgagtgaaatagaaagctcattg<br>tctatgccatagttgctttggtttgtatggctaagcagtagtgttcaggtattttgctctcccaaaaatatttggatcacatgatacaaacagtgaagat<br>tctgtctgctctgggttaattttggaggccaggaaaaaaatgtccatgattcatgatacgaagaatgagcttgtgctgctgaaaatgaaaaagtaagcta<br>gcatttcgtcatcctgcactacttgctgctttgaaggaatatagattcctaggtcatagaatatatacatagtcaaaaacactcct<font color="green"><u>ATAATTGATTCTTT<br></u></font><font color="red">AATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATAC<br>AAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGT<br>GAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>ATAATTGATTCTTT</u></font>tgtga<br>accagatagagtatacaagtctttggagatcaagagagtgaaatgagaagccataactgccctctgcctagctaggctgagttccgagaggtggttggaa<br>gacagaaagtggcgtctgtccctgggtaagggctgtggcgtaactgggtgtggggcttttctctaatcatctggagaggagagcccctgacaagctggcc<br>cccaaacaaggtggctatggattcttctttttataaaagtttaaagtgtcttaaataaccttttgtgccattgaatagaaagaaaggtagtggaactcca<br>gaatacaagggattggccagaataaatggttggtatagagtagatgtcaatctttttatttaaaaattttttaagtacatt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:WRNIP1:NM:130395:3/7	
0	chr5	179301791	179301792	1001944	0	+	1104685059716	NA	NA	SINE	Alu	AluY	accacaacaagctagtctgacattaccagaaagagaaacctgataaacttattaccagtggcttagagtttccttaatgaggcttaatagaatactgaaa<br>ctgattaacggaatttaaaaaatgaaatagagaagtacattctgcaagtctctgtaaaacataagaatctcattatgtctgttatcctatttgctgtttt<br>atgtctttctttctcaataagaccataaactccccatgggcacaactctgatacagtttatttcagtttcttcacatcatgccaataaatattccattaa<br>attgagttgagtgggatgtacactattctaattagagtcactaatttgtgtccaaataggtttcacttagaaccatctcagta<font color="green"><u>GAAATAAAGAGGGCACT<br></u></font><font color="red">TACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACCGCACTCCAACCTGGGAGACACAGCG<br>AGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAAATAAAGAGGGCACT</u></font>ggcaccaagaaacaatgaagaagctgaaaattaaccagcagttgt<br>tatttctgtaccatcagttatggtagttagacggctttaatgaagattacaaaggttttaaataactgaaacactcatcagttgaggactgattcaatat<br>acaatgcatttatcaatattaaagagactgaggcagacagatctgtatgcactgatgtggaaaaatctccaaattttggaaaaaaagaatatatggtccg<br>tatgctctttttggaaaatctatagtattatatgttcttagtctcgaatttaagtaactgtttttggattaagttctagaaaatagtaagtggaagccca<br>gctgagccttgaaactgcaaccttgagtaagaaagaat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	13567575	13567576	1001945	0	+	1104685173693	NA	NA	SINE	Alu	AluY	ttttgtcctatcttgctgtggtttgaatgtttgtgtgccctccaaaatatatgaattggaaacttaatccccaatgcaaaagtgttgggaggtgaggtct<br>aatggtaggtgccagggccataagggctctgctctgatgagtgggttaatgctgctatcaaaagagcttgcagtggtactggcatcaaaatagacacata<br>gaccaatggaacagaatagagatctcagaaataagaccacacatttccaaccatctaatcttcgacaaacctgacaaaaacaagcaatggggaaaggatt<br>ccctattttataaatggtgctgggaaaactggctagccatatgcagaaaactgaaactggaccccttccttacaccttata<font color="green"><u>AAAAATTAACTCAAGATGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAATTAACTCAAGATGG</u></font>attaaagacttaaatataaaatccaaaaccataaaaaccctagaagaaaatctaagcaataccattaaggatataggcat<br>gggcaaagattttatgatgaaactgccaaaagcaattgcaacaaaagcaaaaattgacaaatgggatctaattaaactaaagagcttctacacagcaaaa<br>gaaactatcatcagagcaaacagacaacctacagaatgggaaaaaatttttgcaatctacccatctgacaaaggtttaatatccagaacctacaaggaac<br>ttaaatttataagaaaaaaacaaccccatcaaaaagtaggcaaaggacataaacagacacttctcaaaagaggacatttatgcagccaacaaacatatga<br>a	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GFOD1:NM:018988:1/2	
0	chr6	5979774	5979775	1001946	0	+	1104685171360	NA	NA	SINE	Alu	AluYa5	tgagactctagttcactctcctctccattaatcaaaaatagaaatgctttcctgcttgcctgaaagtattgacattatactattgccccagtactgagca<br>tttgctcaaaggccattacaaaataactggaaaatggatgcgtattttggttggtttaggggaacaaattactcaagcaacatgtagttattgcgctttt<br>ttttttatctcccacactgcccaacattgtgagagatataaaagaatgatattctttcctttcaatgctataaaagattgatgttttcctttttttactc<br>tttgttgacactccagaaaaaaaaacagttaacacgagataggataaagtgtggtttttaacaggtgatataggttgtttaatt<font color="green"><u>AGAAAAGAGAAAGCAC<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCAGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AGAAAAGAGAAAGCAC</u></font>actgtaggcccatagaagtggaaagatttttcttctccagaagaaaaatcctctcctctctcttgccacccgctga<br>gtgagatgctcattctttgagcctcagagatgtcctgggtacatccactcctttacttgccacattttattatactacaagctgggtggctggacatcct<br>ggtttgcccagcacagtcccagtttatgcctgttatcccagaataatcattaatagtttccccttttactctcaagagtaactcagtttagatgttaaat<br>ataattataacataaacataaactgaagaccatatagcccaggcttcttatgctgttgcattcaaaagagcacaatatagtaaccaaaagtaattagaaa<br>tgtttctt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	152103758	152103759	1001947	0	+	1104685234571	NA	NA	SINE	Alu	AluYa5	cagaccacagtgcaatcaaactagaactcaggattaagaatctcactcaaaaccgctcaactacatggaaactgaacaacctgctcctgaatgactactg<br>ggtacataacgaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacacaacataccagaatctctgtgacgcattcaaagcagtg<br>tgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatccaaaattgacaccctaacatcacaattaaaagaactagaaaagcaag<br>agcaaacacattcaaaagctagcagaaggcaagaaataactaaaatcagagaagaactgaaggaaatagagacacaaaaaacgcttc<font color="green"><u>TCATTAATTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>TCATTAATTTTTT</u></font>tccagaagctggttttttgaaaggatcaataaaattgatagaccgctagcaagactaataaagaaaaagagagagatgaatc<br>aaatagatgcaataaaaaatgataaaggggatatcaccaccgatcccacagcaatacaaactaccatcagagaatactacaaacacctctatgcaaataa<br>actagaaaatcaagaagaaatggataaattcctcaacacatacactctcccaagactaaaccagaaagaagttgaatctctgaatagaccaataacagga<br>tctgaaattgtggcaataatcaatagcttaccaaccaaaaagagtccaggaccagatggattcacagccaaattctaccagaggtacaaggaggaactgg<br>tacca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	158649752	158649753	1001948	0	-	1104685443890	NA	NA	SINE	Alu	AluYa5	tcactgtgggcataggtgggtgagaaatatttgtcatatgctgactttgatatattgagttctctattcttcaaatcacatcacttacccagtggtaaag<br>ctggaagggctaagtttgtggtgcacacagtcttgcagctgcatgctcccatagggcaggggtcatatctgtcttctttaccatggaagatgtggcacct<br>cacacgtggcctggtatagcacaggggctcaataggtagctggaagatgatgctacaagggagtgaagaaatgcataccttctcctggtcacattgaaca<br>tctctcatctcctaatgagtcttgtcctttctacttttgcccttcgataacccattctcacacaagaaccggaatgatcctttt<font color="green"><u>GAACCTGATTTATTTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATAA<br>ATAAAAATAAAAAAT</font><font color="green"><u>GAACCTGATTTATTTT</u></font>taaaattagcttacagtgatggttgtacagctctctaaatacactaaaaaccattgaactgcacacttc<br>aaatgggtaaatttgtgataggtaaattctatctcaataaggctgttaaaaaaaattagattgtcattctatgcttaacacccttcactggttcctgaca<br>tttcacgtagaattcgccagactgcttatggtgatgtacaacatcctacctttcccacgggctctgcctgcctctccaacctcacctcacaccaggccac<br>agcttacctcccactcttacctgaatctgcctagcttggtcctgccttccacaatattcttctccatacttttgtactttttttcatttcttccttttat<br>ttgccccttaagatt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	141738840	141738841	1001949	0	-	1104685236897	NA	NA	SINE	Alu	AluYb9	tggtatatgagtactactatctattaggggggtggtttttgagttacactttttttcttttctcaattatttcatccattgagaggctcagcactgggaa<br>ttgcagacagatacacaaacctggttgagaaatccattttccactttccacacgtgtattgttgaggacattacctagtctcctggagcctcggcttcct<br>tatggagataatgggagatttaaaaaaaaagtaccccctaaacttgctgcaagaataaaactgagaaaacacatggaaactttgggtgctttttgacctg<br>acacagtaagtagaagctgttatgtcatttttctatattcactgtgataggttacacttcacaaagcaaggtttaaacactggggtt<font color="green"><u>AATCCCCATTTTT<br></u></font><font color="red">TGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br></font><font color="green"><u>AATCCCCATTTTT</u></font>aaaattttgataaccctcattgtcctcatcagaccctctcctaagcccctgcttagttttactttgaaagagatattgcacaacctg<br>cattaaagtgacaaggctccaccccgttaaccaaaataatgaatgggaacaagattaggagattgtaaagtgcctgcaaatggaaggcagcctgagtccg<br>gtttttactggatgaccctgaagggacagtggtttaaacaacagcccaagtaaagtaccaggggtatttacatgaggtgcaataatgcattaaatgaaca<br>cattaaatgcaggggggcatgggagtgaagatggaatgtggaggggctgtatgtcaagaaaatcaacattactcttccaacatctgggccaaagcttcca<br>	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	96615902	96615903	1001950	0	-	1104685083928	NA	NA	SINE	Alu	AluYg6	gatgggcagctacatgagtctaagaggaaaaagatcttagaatcatagtggagatcagtttaacaaaataaaatcagaaaaaaatataaaaagcattaaa<br>aattccatgagactttgcataagtctactgtaaggtattaagaaggagtttaccaaccccatgggaaacaagaaaataaaaaaggaagcagtttgatgca<br>tttttgggaaaggcaaatatgaaatgaaaactgatacaaagaatgaaagtgtttgtaaaactatacccatgagaaactaggaatactaaaaacaaataaa<br>gaagagaagacttaatgacttctaagataataatatatgttatgattattagaatttacacaactccagagagaacagagcc<font color="green"><u>CCTCTCAAGATACTTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>CCTCTCAAGATACTTCTT</u></font>tttaaagaataatgggtgataaaatcattcttaaggggagatgtagttaaatactagaatgataatatcatagac<br>tctgcttcaatgacaccattataaagtcgattaaaattcatgtgccataataggaagatcctaaaatgagacagaaataaactataagttctctcctatt<br>cttataacttcataataatatcccatggaattactagtaaacttcaattttaatgctcattaaatataggatacattttaatgtgtaataacaggcttat<br>gtatttggccatttataatatttgctttgtcaaaactaactaaaatggcaacagatttactctcttaaactcactgtttcaatgttataaaaagtctttt<br>ttattaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FUT9:NM:006581:1/3	
0	chr6	98358062	98358063	1001951	0	-	1104685083532	NA	NA	SINE	Alu	AluYa5	aatgcaaattatcataataaaggttctcaaaaggcctgcaatgcagaaggtatttaagttttgcttaattgaatttttctccaacctaactgactgaaga<br>cccaagtttacatagtaaatctattaatatcacagggcttactttgggaaataattactactgtttcttataacagattatgttcataaagctatgaaaa<br>tgtagaaaagtttataatgcttgcgagagtgatgggtgataatatattaaagcagtatttctcaaagtgtgatctaggaagtcctaggcatccctaagat<br>actttcagaggatccatgagttcaaagatcttttaataatactaaaatgtcattttccctttcaccttcattgtctcacagatgtaca<font color="green"><u>TAGACCATTTCT<br></u></font><font color="red">ACTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTC<br>TACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCG<br>GAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TAGA<br>CCATTTCT</u></font>gagcccgtaaaacatgtaataatgtcatcactctgactgataacgaaaagagtacttggatattttgtatttttaaaacctttagttttgat<br>ttctaatacaaataggtattgctagatataacctacattaacaaaagctttttggagtgctcaatacattttaagggttaaagggggtcctaaaacccaa<br>aagtttgagaacactatttgaaagtaaacacaggtttgggtgctattttaaaatggtggggagcctaccacggagtctgaaagtttgctttcaaaggtta<br>cctcttgggattttaatagcctttggatcaatgaaagaatcgtttctatgtatggtaaacttcagcatttccaatatgacaataaattatattttt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	100514221	100514222	1001952	0	+	1104685082944	NA	NA	SINE	Alu	AluY	gatagataccaatggaaaaagaaattatgcgtttcaggaaaaaagaaattggtaaatctctctaagtaggaacctagacacacatgtccagaggagacat<br>gtccacagaaaatgtttgagatgtcccctgaatctgtagctatgctgcttggtgaagatgtttccctgtctggagccagtctacaaagactgggagaggt<br>agctatattgttaaaatgtgtagataccaatgcaaagttacaaggaaaacaaagaagcggagaaaaattgcccaatcaaatgagccaagtaaattttcag<br>aaattgatactaaagaaacagttagatactaattacctgacaaataattcaaaataaccaccataaaggtgattgataaactcattaaaa<font color="green"><u>TCCTGTATTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCTGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AACC</font><font color="green"><u>TCCTGTATTG</u></font>caaaatgagagtttcagcaaagggatagaaaatataaaaaagaaccaaacagattttggagctgagaaatgcaacaattgaaatga<br>aaaattcactataaagtttcaacagcagacttgatcaagcaagagagagaatcagaaaatttgaagacaactcatttgaaatataaactaggcagaggag<br>taaaaagaaacaataataataatgataataataataataataataggtaaaaaaagccttaaagactattggacaccactgaaaggatccatatacatgt<br>tatgggcatctcagaaaaagaagagaaagaaagggacagaaagcttatttaaagaaataatggctgaaatcttcctaaatctgggaagggaaatgaacat<br>ccag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MCHR2:NM:001040179:1/6	
0	chr6	104457273	104457274	1001953	0	-	1104685081983	NA	NA	SINE	Alu	AluYa5	cagagaacctaactaacttgtgtccagattcctgatatacagaaactgtgagatcataaatatgcatttttataagccactaaacttgtggtaattttat<br>gttgaatagaaaactaaaataatgtgttaggtaattttcaggttttttttgttttaattgtttttccccctccaccaagttagttaccaggatcctcgtt<br>aaacctctgctttagagacctaggataagtcaattatagtgttgaaacagaaatgataaaaaattcttagatgaaatattttctttaatctcttaaaagg<br>gagtggaacttacatccagactgtatcttcttcctgaagaccttctttgtcgtcactctcctttggtagaggagaataaagactt<font color="green"><u>CTCCTTCCCATTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>CTCCTTCCCATTTTT</u></font>tgaacaaaatttcctacagaagcatttagccccaggtctcctttgactttttcatgcctttgagaatgatctcgacttg<br>acctttgactctatgttactacttcactgactttctacaagatctccaggacaggcacgactgaacaaatgcccatgtaggaaagtataagaatatgtat<br>ctttctatttcacttggatttctcataatttttttaaatctcagtatcatctcaactgaccacaaccaacaaaaatatttactttggtcaagaaagacag<br>aagatttcagcaatagttctaaattatacatggagaacaagaagaaataattctagcctataaaactaggctgaactcttggcatttccatgaatctgtg<br>gaagaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	71786037	71786038	1001954	0	+	1104685405138	NA	NA	SINE	Alu	AluYb8	agccagagcaattggacaagagaaagaagttagaaggaagtaaaagtatccctatttgcagacaacatgatcttatacagagaaaaccctaaaagacttc<br>atcaaaaagctgttagaattaataaatgaattcagtaaagttgcaagatatagaatcaacatacaaaaatcagtagcatttctatgtgccagttttgaac<br>tacctaaaaaagaaatcaagataatgatctcatttacagcagctacaaaataggtacctaggaataaacttaaccagggaagtgaaagagttctatgttg<br>aaaactataaaacaccgatgaaagaaactgaagagaaaacaaataaatggaaagatatcccacgtacatggactggaagaattaatattgt<font color="green"><u>AAAATGGTC<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATGGTC</u></font>atattactgaaagtgatctacagattaatgcaatcactatcaaaataccaatgaaattcttcacagaaata<br>gaaaaagtgatcctaaaatttatatagaatcacaaaagaccccaaatagcctaagctgtcctgagcaaaaagaacaaagctggaggcatcacagtaacct<br>gacttcaaaatataccacagagctatagtaaccaaaccaacatactggcataaaatcagacatatagaccaatgaaacagaatacagagcccagaaacaa<br>atttatgcacctacagccagcttgatctttgacaaagatgccagaagcacacactgaggaaaggacagtctctgcaataaatggtgctgggaaaattgga<br>tactcacatgcagaagaatg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	72637216	72637217	1001955	0	+	1104685405373	NA	NA	SINE	Alu	AluY	gcctgggactgagtgagatctatgcaatagtatagtcagagaccaggtgacaaaatgtgtgccacccaccagatggggagagagaagagagaaatcacta<br>aataaaccaaggaggggtcactcagggagactaaagtgctcccaaactatctaacatcatggaagccaaggaaggagaatgtcaccaacagggtcatgtg<br>ataggcccagtccaatcagaaaaatttgtcatttaatatcctgctagagaaaaaaagggttaaccagggttggacataggtgcagtcaacattgtagaag<br>aaaaaaaaaaaaagagtgctatggtttgaatgtggtttcttctccaaaattcatgttgaaacctaatcacaaaggtgatggtat<font color="green"><u>AGAAGATGGTTGAGTC<br></u></font><font color="red">CGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AGAAGATGGTTGAGTC</u></font>atgagggaacctccctcatgaattgattaaggccttataaaaagggcttgcaggaatgggttcactctcttccattcttct<br>gctatgtgagaacagagttcaccccatctttctcttccaccttctcccatgtgaggatgcagcaagaaggcccttaccagacaccttgaccattcacttc<br>ccagcctccagaactgtgagaaataaatttataatgtttataaattacccagtctgtggtattttgttatagcagctcaaacagactaagacagggagca<br>aagtagcctatgaatgaaggcttaatctaagcgggagatcctggagcccaggttggttagctgtcattctattcacacaggcaggagtagatgggcttcc<br>tgg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	78899903	78899904	1001956	0	-	1104685407009	NA	NA	SINE	Alu	AluYg6	atattcctgggacattgcccttgtgcataatgttgtttaagacttctccccgcttgttcccagagctctatgtctagcgtgccttcttctgggaatgcct<br>tcccatgggttatgggaaacaagaatttgcattaggtcccttaattgagcctgcaaaactgaggctctactagctttaagcagctgtttcaatactttta<br>tatgctgttgacgttgagctgataactattgtaccatgatgaaaccgtagcctgaacaattccctcgaacttggaaatcctgagtgggcaccaattgtgt<br>ccagaattggttccttccagtgggtttgtggtctcattgacttcaagaatgaagctgtggacctgtgcggtgagtgttacagctctt<font color="green"><u>AAAGATGGCAGGG<br></u></font><font color="red">TCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTA<br>CTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTGGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAG<br>CTTGCAGTGAGTCAAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAACGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGATGGCAGGG</u></font>cccaa<br>agagtgggcagtagcaaggtttattgtgaagaacaaaaaaacaaagctttcactgcatggaaggggacccaagtgggttgccactgctagctggggtggc<br>cagcttttatttccttatttgtcccctcccatgttccatttctgtcctatcagaatccccttttttcagtcctccctgcagttggctacttttagtatcc<br>tgctgattggtgggttttacagagtgctgactggtgcattttacagagtgctgattggagcattttacagagccctgattggtgcattttacaatcctct<br>tgctagctacagagtgatgattggtgcattttacaatcctcttgtaagacagaaaagttctccaagtccccactggactcag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	74398647	74398648	1001957	0	+	1104685405862	NA	NA	SINE	Alu	AluYb8	cacaggaaccatgttttatttttttcctcttattcatttttaagtcctcagctgacaaagaacctaggtcatagtaaagtttcaaaaaaaaatgtttaaa<br>gaatgaatgagtagatgctgcacatttcttgggtccaagatttaaagatgcagcttcacgtaacacatcattttacaacactgtcaactataacgtcatg<br>tgctt<font color="green"><u>AAGAATGCAGTCTGGTTGTACAAGGTGACTCATGCCTGTAATCCCAGCATTTTGGGAGTCTTAGGCAGGAAGACTCCTTAAGCCCAGCAGTTTGA<br>GACCAGCTTGATCATCATAGCGAGACTCCGTCTCTACAAAAAATAATTAGCTAGGCATGGTGGTGTGCACCTGTAGTCCCAGCTACTCGAGAGGCTGAGG<br></u></font><font color="red">GCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCACTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGT<br>CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGCAGTCTGGTTGTACAAGGTGACTCATGCCTGTAATCCCAGCATTTTGGGAGTCTTAGGCAGG<br>AAGACTCCTTAAGCCCAGCAGTTTGAGACCAGCTTGATCATCATAGCGAGACTCCGTCTCTACAAAAAATAATTAGCTAGGCATGGTGGTGTGCACCTGT<br>AGTCCCAGCTACTCGAGAGGCTGAGG</u></font>tgggaagactgcttgaacctgtagggttgaggctgcactgagctgtgatggtgccactgtactccagcctgggc<br>actgagctagactcaaaaaaaaaaaaaaaaaaaaaaggaatgcaatctgggcttctcctcctaactctcttgcctctgaatattcctttttccgaagtgt<br>gtcgagaaacaacctaagtttggagagatta	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SLC17A5:NM:012434:6/11	
0	chr6	74724739	74724740	1001958	0	-	1104685405939	NA	NA	SINE	Alu	AluYa5	catgaaaaaatgctcatcatcactgtccatcagagaaatgcaaatcaaaactacaatgagataccatctcacaccagttagaatggcaatcattaaaaag<br>tcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaacccttgtggaagtcagtgt<br>ggcgattcctcagggatctagaactagaaataccatttgatccagccatcccattactgggtatatacccaaaggattataaatcatgctgctataaaga<br>cacatgcacacgtatgtttattgcggcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaacgatagactggatt<font color="green"><u>AAGAAAATGTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAAATCGAGACCATCCCAGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>GAAAATGTGG</u></font>acatatacaccatggaatactatgcagccataaaaaatgaagagttcatgtcctttgtagggacatggatgaaactggaaaccatcagta<br>tcagcaaactatcgcaaggacaaaaaaccaaacaccacatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacat<br>cacactcgtgggactgttgtggggtggggggaggggggagggatagcattaggagatatacctaatgctaaatgacgagttgctgggtgcaccacaccaa<br>catggcacatgtatacatatgtaacaaacctgcacattgtgcacatgtaccctaaaacttaaagtataataataattaaaaaaaaattttcaatgcct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	32749425	32749426	1001959	0	+	1104685374809	NA	NA	SINE	Alu	AluYa5	gcccaagaccatgggaacacacctcctgtattggcgtgatctagatgtgagacctggagtcaaaggagatcattttggagctttaaaattgactgcagct<br>gggtgtggtggctcatgcctgtaatcccagcactttgaaagaccaaggtgggcggaccacgaggtcaggagatcgagaccatcccggctaaaacggtgaa<br>accccgtctctactaaaa<font color="green"><u>AAAAAAGTTAGCCAGGCATGGTGGCAGGCACCTGCAGTCCTAGCTACTTGGAAGGCTGAGGCAGGAGAATGGCGTGAACCCA<br>GGAGGCAGAGCTTGCAGTGAGCAGAGATGGCGCCACTGCACTCCAGCCTGGACGACAGAGCGAGATTCTGTCTCAAAAAATAAATAAATAAAAATAAAAA<br></u></font><font color="red">AA</font><font color="green"><u>AAAAAAGTTAGCCAGGCATGGTGGCAGGCACCTGCAGTCCTAGCTACTTGGAAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCAGAGCTTGCA<br>GTGAGCAGAGATGGCGCCACTGCACTCCAGCCTGGACGACAGAGCGAGATTCTGTCTCAAAAAATAAATAAATAAAAATAAAAA</u></font>aataaaataataaaat<br>aaaaaaatttgactgccctgctggatttcagacttgtgtgtgccttgtaacccctttgttctggccaatttctcctatttggaatggctgtatttaccca<br>atacctgtacctccattgtatctaaaaagtaactagcttgcttttgattttacaggctcataggtggaaggacttgccttgtctcagatgagactttgga<br>ct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	49669889	49669890	1001960	0	+	1104685505702	NA	NA	SINE	Alu	AluYb8	tgtaatcgcaagtactcggcaggctgagacaggagaatcgcttgaacccgggaggtagaggttgcagtgagccgagattgcaccattgcattccagcctg<br>ggcaacaagagcaaaattttgtctcaaaaacaaacaaacaacaaacaaacaaacaaacaaaacaaaaacaaagaaattaggaattgagaaaacagctaga<br>acaggaaaaggataagatgagcacatctcagaaagacataggaaccagcatgaatagacttgcactggcaaatctgggacaatttcaccgtcacaacaaa<br>tgtttttataatgtattgtaaataatttaataaaataaaaaaatcatgaatctatagggatataagttaataaatgaatgcatt<font color="green"><u>TCCTCCTTAATCTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>TCCTCCTTAATCTTTC</u></font>tgggacattgacatagggatgtggaagatttcatattgctttcacacaaaataaaat<br>gaattataaagataaaaacaagaaactttaaagcagagaaacacgctctccatcaatgattgaagtgaataatcattaataatggaacaagttcaaaaag<br>aattccacctggtaggatgcaattcagtatataggctcacttttgtgatattgctcttaaagttgtataacctaaatctaatcatggggaaacatcagca<br>aaacccagagtggggaccttctatgaaataactgcctacattcttcaaaagtgtcaaggtcatgaaagtcagagaaacaccaaggaactgttccagactg<br>aaggactaaagaggcaagaaactaggt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	56810682	56810683	1001961	0	+	1104685503785	NA	NA	SINE	Alu	AluYa5	ctaacttcctgctggggatcataaagggtcaccctcactgcctaaagaataggcactcaagattgctttcaatctggtacagcataaccctccatcattc<br>atccatatccatcttcctacaaattctaaccaatcctttccctgaaacctgcggtgcacttcagccaacgatcaaaatgattttggcaattatgtcaatg<br>aaatggaacagtcatgctagtttctcctcttggagttttcctccctggtacttttcaccttctcacagggtgaaatcccatttgaccccaaatacaaagc<br>ttttccccagcctaagcagaattatttgcttcttcttttgggagagatgaagcaagtcagaaaacaaaagcaaacaaaattgcatt<font color="green"><u>TCTGCTTGTCCTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>TCTGCTTGTCCTTT</u></font>aaaaaaaatgaataagaaggggtctcatttgatcacttactgaaacaatgacatacttcagcaaataat<br>tacctgaaattcctccttggacataggtagaatgtaatccctgaaatattaagagctaagaaatggacacagaagtctttcctgttttttattcaaagcc<br>attatagagagacttccatgaaacagaagcatctgtgtttagttaatatgaaataacaaacattcgaaactacaaatcatcttctcttcccaattagtcc<br>accaggtcacatgatttgggtgtgttcttgtgcacttttatactcagttgtggaactaaaacagaaatgaacatgacagcctagatattccatcttgtta<br>tcacctctatagcttca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DST:NM:183380:1/94	
0	chr6	64894202	64894203	1001962	0	+	1104685200449	NA	NA	SINE	Alu	AluYb8	ggtacacgtgcacaacgtgcaggtttgttacatatgtatacatgtgccatgttgcacaacaggtgctggagaggatgtggagaaataggaacacttttac<br>actgttggtgggactgtaaactagttgctggtgggattgtaaactagttgttggtgggactataaactagttcaaccattgtggaagacagtgtggtgat<br>tcctcaaggatctagaactagaaataccatttgacccagcgatcccattactgggtatatacccaaaggattataaaccatgctgctacaaaggcacatg<br>cacacgtatgtttattgcggcactattcacaatagcgaagacttggaaccaacccaaatgcccatcaatgatagaccggatt<font color="green"><u>TATGTGCCACATTTTCTT<br></u></font><font color="red">GCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGAT<br>TGCGCCACTGCAGTCCGCAATCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TATGTGCCACATTTTCTT</u></font>acacca<br>tggaatacaatgcactattctcttctacatcagttttcctctcaagtctcctcaagatttgtgcactttctgtgactctagcatattgcagttactccag<br>tatcaaatgttgtgttaaaattctggcctgtagaaatgatcactcagatatcttactaatttgttggcattttaaggttcttccaccaaaacatcacgtt<br>ctgcacatcgtttttaaattcttattttctctgccaggtccagctcctttcttactgaccagagctctatcagcttcttcacacttctcctccttaactg<br>cttatctttcaaagagcagttcaagtcccctcttcactgtcttcctgcaatcatttaggtccttgtcaatgtctgt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:EYS:NM:001142800:31/43	
0	chr6	68368033	68368034	1001963	0	-	1104685199364	NA	NA	SINE	Alu	AluYb8	attaaatataacaaaatgcattctcctagccaaaatcaattagtaatggtgaaaataataaatttgataggatcaaaattagagaaaatattattttggc<br>tattatttaactgaaatccacaaggatgctgatggttagagccagttaaggtacatttcatatgtcctaaagagggtgtccccccatgaatgaacgctct<br>tcagaatgtcaagtactgtctatgtctttaaattcaattttgtgttgtactagctaattctggaaaacaagaaaagaacattttccatagtacattccat<br>tctattttagtgccataaaatagaattctaagcattctattataaggcagcaacaacaattagagatcattttaaaacttcatt<font color="green"><u>TTTTTGCCAGTATTTT<br></u></font><font color="red">ACGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>TTTTTGCCAGTATTTT</u></font>taaaaattcctaaaaaattatacagaaaatatcgaggccctgtacgaatagggcaacaaaattattaaagt<br>aaataaatgtacctgagttatagtgagaggtgtgcagtttttgtggttttgaaggcaatttcaaaatatcaattctgttaaataaatataggaatttact<br>gaaatgacaatgataattcaagagtggtttcttgaaattgttataagtgactcataagatcaaaaaaagaaatacacatcttagaattttaattggattt<br>ttaaaaaatatccacaaattattgaagactcaaaataaaattagtataatgaaatcaactagcattataatagtagtaaacaaatagaactgagaaaagt<br>tagtacatcaatg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	66872846	66872847	1001964	0	-	1104685199925	NA	NA	SINE	Alu	AluYb8	gaatgtaaattagtccaaccattgcggaagacagtgtggagattccttaaggagctagaaccagaaataccatttgacccagcaatcccattactgggta<br>tatacccaaaggattataaatcattctactataaagacacatgcacacgtatgtttattgcagcactgttcacaatagcaaagacttggaacaaaaccaa<br>aggtaaagaaaatcttaaggctttcagacaacagtgatacatattggggaacaacaattcaattgacttggagaattgtacattcgtaaccctgaagcca<br>gaggacagtagaataatatttaaaattctgaaagaaatggactgccaactagcagttctatatccagcaaaaatatattttacacataagaa<font color="green"><u>TTTATTTC<br></u></font><font color="red">ATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGT<br>CTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAA<br>GCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>TTTATTTC</u></font>gattttatctcatggagaataattgagaggattcatcaccaatagatctgttctgaaagaaatgctacaggaggttttttaggc<br>tgaaagacatttataacagaaaaacaaaaaaaaatgaaactttagaaattaatgaattctactgcatgtaaattataaaatacatttacaacgatttcta<br>aaagctctaggatactattgggttgtgttgtaagtgaatgtttatggaagaaactactaaactgctttctgaaacttgtgtaccattttacattttctcc<br>aggactctgtaagttccagttgctccggatcgtcgtccaacaatggttttgttagtttgttttagccaatcaaattggtatgtagtgcatgtacaacctg<br>tcagtctt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	69699504	69699505	1001965	0	+	1104685054419	NA	NA	SINE	Alu	AluY	tttaaccaaatatagtatagacaaacataaatacatgtataagacttttaacagaagacaattataatgtgaaaaagagaagaatatttttccttaaata<br>ttttcctagattatacttttttaaggtgttaaggtagtctgaataaatacaggtaagtgtcacacaatgaaattttacaaaaattaagctttacttataa<br>aagtgttccctgtatttgtctttaagccagaaaaaagactgtaacatataaataatataaaatttgttaacagtaatttgagaacaaagaataaggcaaa<br>aacatacatttaaataataataaaagacaatatatttttatattaatcatggagaaaaaagcaaaggctatcacacttttatattt<font color="green"><u>GAGAAGTAATTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCTACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAGAAGTAATTCTT</u></font>aaatgagtaaactggcctcttcaatcaatatgatcagtaaaagattgtaattaaaagcaatctttct<br>acagagtgataaagtgagtgtgacttttttaaaaagagtaacatttgataaagtagcatagtttggatataaatgatggtgctctaatagcctatcatgc<br>aatctttatttattattaaggaatataaaattaaatgatatcatataatatatatatttaatatagacatctaaattaaatgccaataagatggcttaag<br>atatcctagttacattttcttatgcttaagcatcatagtcatcaattaatttataaacatgtttagaaaagcagtctttcattaccgtgaggaaaatagc<br>ctaaatttggactatgtag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:BAI3:NM:001704:4/32	
0	chr6	31089062	31089063	1001966	0	-	1104685373780	NA	NA	SINE	Alu	AluYa5	cttacatccattacctaatacaataaaataaaataaacaagtgagtgggaggtgagaagtgacatagcaagtgtggggaagtccttcaagaatgggggtg<br>aggggccgggcccggtggctcacacccgtaatcccagcactttgggaggccaaggtgggtagattgtctgagctcaggagttcgagtccagcctgggcaa<br>cacaatgaaaccccgtctctactaaaatac<font color="green"><u>AAAAAATTAGCTGGGCGTGGCGGTGTGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATC<br>GCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCAGCACTGCACTCTAGCCTGGGCGACAGAGCCACACTCCATCTCCAAAAAAAAAAAAAA<br></u></font><font color="red">AGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAA</font><font color="green"><u>AAAAAATTAGCTGGGCGTGGCGGTGTGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGG<br>AGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCAGCACTGCACTCTAGCCTGGGCGACAGAGCCACACTCCATCTCCAAAAAAAA<br>AAAAAA</u></font>aaaaaagaatgggggtgaggaggagagtggagggagaggtggtggctgaggagtgatgcggggacgttaggatggacatcattcagtgtttggt<br>ccagggacctctgggatcacactgtctgaagaacccacgccatcccaccaagcttactgaatcaagatcttgcttggtggggtgtcagggcctggaaacc<br>caagtttttaatcgtctccttggatgatacttgtgc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	32881413	32881414	1001967	0	-	1104685374938	NA	NA	SINE	Alu	AluYa5	gaaaagtccatcagactaacagtggacctgtcagaagaatctctacaagccagaagagactgggggccaacatttattattcttaaagaaaataatttca<br>acccagaatttcatatctggccaaactaatcttcaaaagtgaaggagaaataagaaccttttcagagaaggaaatgctgagggaatttcattaccactag<br>acttgtcttacaagagctcctgaaggaagcactaaatatggaaaggaaagacttactagccactacaaaaacacactgaagtacacagaccagtgacact<br>ataaagcaaccacataaacaagtctgcaaaataaccagctaacatcatgatgacaggatgaaatccacacatatcaatactaatcttaaatgtaaatg<font color="green"><u>GG<br></u></font><font color="red">GCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACGATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAGTAAATG</font><font color="green"><u>GG</u></font>tagtgccccaattaaaaggcacagagtggtaatctggataaagaaccaaggcctattagtatgctgtcttcaaaagactcat<br>ctcacatgcagtgacacacataggatcaaaataaacagatggagaaaaatctaccaagcaaatggaaaacagaaaaaagcaggggttgcaatactagttt<br>cagacaaaacagactttaaaccaacaaagatcaaaaaagatgaagaagggcattacataatggtaaatggttcaattcaacaaaagatctaagtattcta<br>aaaatatatacctccaaaagaggagcacccagattcataaagcaagttcttaacgaccttcaaagagacttagactcccacacaatgatagtgggagact<br>ttgacaccccattgac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	44906600	44906601	1001968	0	-	1104685506806	NA	NA	SINE	Alu	AluYb8	gaaagaacactgaggaatgacacttggaatgtgccactgttttgtcatccctgatacactgatctggagtgaactgcatagcagcataactaaccaaaga<br>aatttcagccagggcgccaaagcctgacaagcacagtaaatcttcttaagcaggatatttggagagaaggttttcaagttaattgaattttatgattaag<br>agaaggttatctagaaaactatatttgtttcacctcatgttgatggaagtctttctaaaagggttaagtctactttccatttttagtataattaattata<br>aatgtggtttaattatcttttaagatgaagatttcactgcctccatagcattatcttgatcgtaaaaggttattctgtatttcttaaaatatggc<font color="green"><u>GCCAC<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAATTATGGCTG</font><font color="green"><u>GCCAC</u></font>tgttcaaggttaattcattgggctggaagtatacagactccagaactgcttcagagttattag<br>cctaagggggaaaaatccctaacctgaattttatgattttctttgtttttctgaaaagattgacggttatgaattctctggatgtgactgttactagttt<br>aaatgattaaaaatgtgccagggaaagggaaattttattcctaagtcctgaattttagttctgctcccctctgggtcttatggtggaattcaggatgtta<br>cagagaccctgtgtgatccaggtctcccaacactgaaatgcaaaatatgtctcttggaatgaaaagcatgcaacttttctttctttactgaaacgtatta<br>attattgcacttagaatccattttcccatttt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SUPT3H:NM:181356:12/13	
0	chr6	31546995	31546996	1001969	0	-	1104685374124	GATGATAGCAGCTCTCCTACGAA	CCCAACTATCTCCCTGTCCTC	SINE	Alu	AluY	tgccagaggatgtggtcccttccaaagtcctcccacatgggggagtttgcacagggaccttgtacccttggcccagaggtggggtggcatcctcactcct<br>cactgtggttctcagacctttctgcctccttccttcctaagcccccaaagctgtcatcagattcaggccccactcccctcattgcagccattccctgtgg<br>gccccaggccgttcctctcagtcctgactcttgtagttcctggttcactatcgccctctccagcagtgctgtctccttgatcctcggtgacttcaacata<br>ctcagatgtgatgggccgagtaatggttcccaaagacatccaatctcaatcctgggcacccacgagtaggttgcattacatggc<font color="green"><u>AAAAGGGAAAATACTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAGGGAAAATACTG</u></font>tgtgatgaagattaaggaccttaaaattgcaagattattttggactatctgtgtgggcccgatcaaatctcacaagccattaaaa<br>gcagagaagctgctctggctggagtcagatgctgcagaggaggaaggcagaggagacaccgcagaagggggaggtcagaggttccaagcaggaggattgg<br>atatgttgcatgggatatgtgtgaggaactgagagagggctctaggagctaagggtggcccctggacaggagccagcaaggaagtggggatctcagtcct<br>atctgcaaggaagtgaattcagacaagaacctgaatgagcttgacagtagatttttcctcagagtcagaaggaacacagacctccccttaccttgattt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1697	1399	NA	exon:NC:HCG26:NR_002812:1/1
0	chr6	40154888	40154889	1001970	0	+	1104685508110	NA	NA	SINE	Alu	AluY	caaaatgtgtagcttaaggtgaaaaattcttaaacatactgggtcactaatatactttcctctaaggtggatactgaagatttgaagaccataatgaata<br>aatatggacaaatacatagaacactgtacttggtaaatgcacaccacgttctgttcaagtaaatgtggagcttttgccaaaataaaaggtcaggtagaaa<br>taaaacttcaagagataagttatacaaagtgaactctgattaaatgcaaatagtctagaaatgcaagtaattaaaaaatcatcctatacttgggaattaa<br>gagtcccacttacaaagtaatccataggtcaaaaagaaacttagtgaaagaaaatgttttggggtgaggtattgcttctgttt<font color="green"><u>TCTACAGACTACTTTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>TCTACAGACTACTTTCT</u></font>tgaagagaacattcgtcccttaagggccaggtaattacacaattctatcttttgagtcctcagaactgaggttgcaaggcaac<br>caagtgaattaagttctgaagaatgctaagcccctctgagcagacagaaacagcacggtattacctttggcagaacacaggaggaagagaggcagcagca<br>gaggtagctaagtagcagtcagggaagatgtgacggaattcttaaaggtagcctgtggctaaagtttgaaataatcgggggctcaaaaaatgaagagttt<br>gcactcaagctctttgccaacagcccacactggctgcgcatgaagacaacaggcagagaccagagtgcctggcaggataggactagctgctggtggccag<br>	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	47420749	47420750	1001971	0	+	1104685506267	NA	NA	SINE	Alu	AluY	gcccaaaagttgacctaattgagaaaagagttcaagagagcctgagtagagtttagccaaggagataatcttttgtcaatgtataggtggatgaatggat<br>ggatggatggatggatggatggatggatggatggatggatggatcgatggacaaaagaacttcctcttaacccccacaagtccctttgggtacaaattgt<br>ttctttcctgttgtctatttaccacattttataaatctttattaggccttatacccaagagacagaatctcctaaagagaagatatcatgtaataataaa<br>agcagagaatgatgggtagacagggaagaagaaggagaccagctatttataaccatcaattcccatctaagaagctagattctattaaat<font color="green"><u>GGGGCTCTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>GGGGCTCTTT</u></font>gctgttctgttggactcttgggtcattttaatatccaatggatctgagagtataggctgctgggaactggataccttccca<br>taaaacaaacaggggaatataagggaggagaaaagatactaggaggaggagaagaaggtggtatgactggcagtctgttctgggtgagagaatattacta<br>aaaagttgctgttaatggtaaggctggataactttttagatttgaagatatttgtcttcctgcaacataaacctttttctgtgtccctcagtcttcaatg<br>agccctatgccacatgcttgaagtgaaagggactgaactccctattaagtaggaagaagagagctttgccagatgatgaatcaacctagaaactgaggaa<br>aagcaggag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	3057241	3057242	1001972	0	+	1104685391232	NA	NA	SINE	Alu	AluYa5	cccagaccagatttctcagagcatagccctggagtcaaggctgcctgttgacacagtattcctgccccccgttatcccagctggcctctcctccatacag<br>aggttggaaaagacaaaggaaactccacacgagtcaacacggaccttcccaaacatggacagagatcagcagcttgaaagggtgggacttagatgaacaa<br>attggacaatcatctcccaagggcaggaagggaagaaacaatgatgagaagggaatgaaacataatgatccaaaaagatcctccaatgagaatccgcaga<br>gagattcgagcagagatcacatccatcaaataagaacaaattactatgaaacaggctgcctgaataaaggaacaggtcatggaaat<font color="green"><u>AAAAATAGGGTTGT<br></u></font><font color="red">TCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAA<br>CGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAATAGGGTTGT</u></font>ccgaataataaaataaaatttaacagacagtagaagggctggaagaagatgtctgtgaggtctatctgctgggctggaaagc<br>gagaactaaataaaacccaaaaagaaagaagaagtttgagagaaaagttgagatctaaatgatgaattcagaaagaccaatgtctacttagttccagcag<br>gaagagagaaggtggagggaggaattaatcatgagataacgataatatttgtccgagctgaagaatgacatgattcttcatgaggagagagaccacggag<br>ggccaagtaggatgaatgaaaaagatctgtacctagatatagcctcatgacatttcaggaaagaaaaaaaaaaagatggataatgagaaggctctaaaat<br>cttt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	165106936	165106937	1001973	0	-	1104685087006	NA	NA	SINE	Alu	AluY	tctggcaacacattaaatatttattacatatttagctttgaaatctaaaatatgtaattatatatttacatataataactacatattacatatgtaaatt<br>cttacatagttagctttgaaatccgctgaccctcagcatcaaagccgtccctggcccatcgtaagtagtcaacacatatttgttaacggaatcaataaat<br>gacctcacagtagtaactacctctttgaatggcaagatattaatccacagagttgagcccttgaaatctgaaatagcctttgtctcactaaagtgcctgg<br>attttgagagctggccccttttggttgtttttctgatttgaattactacacacacacacatatatgaatgtccaatggtcaaaat<font color="green"><u>CCCAAAAGCCTTCTT<br></u></font><font color="red">GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAATACGGTGAAACCCCGTCTCTACTAA<br>AAATACAAAAAATTAGCCAGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTT<br>GCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>CCCAAAAGCCTTCTT</u></font>attcaggaa<br>ttccccaccatctttactacttcttggattcgtttctttaccaaaacatgatgtgtttaatttggtcatttaacagcatgtctaattaccctacattact<br>gcaaacctgtaaatgcagagaacaacgtaacggttttaaacttttgtttctgcatggttgaaaattttgtctatagcaaaaataataacaaatgcaacga<br>aaggatggagttagtgttgcacactgtttatggaatatctgtagagatagtagatagagagcaattataaaaataattggaacagaggcactggttctcc<br>actcaaccattctttactattattatggtatctgtatgcatagtgtctctgcctgctaacagaccacaaccaatcc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	160404016	160404017	1001974	0	-	1104685155827	NA	NA	SINE	Alu	AluYa5	accacacacgcattcacattttcaagcaaaaagctttacaaatggccgggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggt<br>ggattactaggtcaagagatctagaccatcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggcaggcaccc<br>tgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccaagaggcagaggttgcagtgagccgagatggcgccattacactccagcctg<br>gcaacagagcaaaactcggtctcaaaaaaaaaaaaaaaaacttttacaatttttggttaggtaaataccagctataaatgggcat<font color="green"><u>GTGGAAATGGCTTTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>GTGGAAATGGCTTTT</u></font>atgattttgtttatatataatacaaatcgcctggcaaacagctttctaggaaagtctaggtccccgaataaagact<br>tgcttcatcaaacaacacaaaaccaaaccccacattagtgtcttcaagcatcagacgccaaaatcccatcaatccaggcacacaaggaaaatgtcactcg<br>tgaaattagcaatatgcttcagtaaaaaaaaaagctcaaggaaaagaaattatcctccccctagcgtgtgtctcatgaccccagctatggctgttatcac<br>acggtctcatatctaaggcatcgttcagaacgtctgctactctatacatttaaaatgacttgtagggacaggcccagtcctaccttccactctgacaacg<br>ggacaggct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:IGF2R:NM:000876:26/48	
0	chr6	167044803	167044804	1001975	0	+	1104685325725	NA	NA	SINE	Alu	AluYb9	cagaaaactcttagatgataactgctctactttagccaaacaacacagaaaaaccttggccccaccttcacccatgccagtaaaggctgtgtgggtggcc<br>tagaattccaccctcattagtctgtaaggaggtgccccaacatccccccaggggtggtgtccactggtggtggtggaggacactgaggactctgaccact<br>gcccaggggtaacaaggccataagtcttcttgggattagtggaggccacagagggagctggagcctccacccccacaaagcaggaatagccccacaactt<br>ccttcattgcagtaatgaggtggtgcccccaattcctaggttggagtcacgtgagacccagtctgttaaaacagaaagcttatat<font color="green"><u>GAGACTCTGGATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>GAGACTCTGGATCTT</u></font>taacatagtcccccaaaagtctaggttccaatttaaaaaaaaatcactaattacacaaagaaccaggaagatctcaaaca<br>gaaaaaaaaaagatgccaaaccaagatgacagaatgttagatatatctgacaaagatttcaaagcagccatgataaaaatgcttcaacaagcaatcacaa<br>accagcctaaaaccaatggagaaacagagcctcagctaaggaatgggagatataaagaagaaccaaatggaagttttagacatgaaaaatacaaaaccaa<br>aatgaaaagtgcacagactgggcttaatagctgagtcgagggaacaaaggaaagaaacagtgaaatgaaggatgaagcaacagatgttctcacctcaaaa<br>cccag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RPS6KA2:NM:001006932:2/22	
0	chr6	141175761	141175762	1001976	0	-	1104685226174	NA	NA	SINE	Alu	AluY	ataaagttcaatttatcaatttatcaagttaaataaaatttcaatatcaagttaaataaaatttatcaattttattggtttctcatggttttgtttcatt<br>tctaagaatgcactgctaaatctaaggtcaggaaaattttcctctgcttttcttctaagagttccattgctttaactcttaacatttaggtcacagattt<br>attttcagttaatttttgtatacagtaggaggtaagagtttaattttattattttgcatgtgactattcagttttcttagtacaacttgttttttgtttg<br>ttttgtttgcttgtttgtttttattagagacaaattagtggttcgtatcacttgttgaaagactttttctccaatgatggaatttggcactcttt<font color="green"><u>TTTCT<br></u></font><font color="red">ATTAGTGGTTCGTATCACTTGTTGAAAGACTTTTTCTCCAATGATGGAATTTGGCACTCTTTCAGAAAATCAGTTGACCGGCCGGGCGCGGTGGCTCACG<br>CTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAA<br>AATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTT<br>GCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAA</font><font color="green"><u>TTT<br>CT</u></font>atcagttgaccatagacacatgggtttatttctagagtttaaattctattcctttgaactatatgtctgtcctcatgacattaccacactgtcttgat<br>tactgttgctgcatagtaagttttgaaatcaggaagcataagtcatcctattatgttcttttaaaaatttgtttattttgggtcccttgcaatttcatac<br>aaattttagaatcagtttgtccatttctaccaatcaatcagttggaattccgacagagattgagttaaagttgcagatcaaattgaggaatattgatatc<br>ttaacaatattaagttttctggtccataaacattggattttttaaattcatttaagtatttaattttttgaataatgctttataattttcagagtat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	149039896	149039897	1001977	0	-	1104685224614	NA	NA	SINE	Alu	AluYb8	aactttgccttctggctagattcgttttacccttactgatatttcctccccttatttgtagtttttgtttcaattatccatggtcacctgtggtctggag<br>attgatgattacagtgcagtaagatattttgagagagaaagagagaccatagtcacataactttattttattttgttttattttattttattttatttta<br>ttttattttattttattttattttattttattttattttatatttgagatggagtctctctttgtcacccaggctggagtgcagtggcaccatctcaggt<br>cactgcaacctctgcctcttgggttcaagagattctcctgcctcagcttcccgagtgactgggattacaggtgcccaccaccatgcccggctaat<font color="green"><u>NNNNN<br></u></font><font color="red">TTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGTGGGACTGCGGACTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCTTCC<br>CGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCGCGCCCGGTTAATTTTTTTTTTTTTTG</font><font color="green"><u>NNNNN</u></font>ttagt<br>agagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctgggattacaggcatg<br>agccaccatgcccggcccacattcacataacttttattacggtatattgttctattttattattagttattattgttaatattttgcttgcttaatttat<br>taattaaactttacattaggtatgtataggaaaaaacggtgtaaacaggatttcgtactgtgatggttaatattgagtgtcaacttgattggattgaaag<br>atgcaaagtattattcctgggtgtgtctgtgagggtgttgccaaaggagattactatttgagtcagtggactgagaaaggcagacccacc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	150952570	150952571	1001978	0	-	1104685224164	NA	NA	SINE	Alu	AluYa5	ctcagcaagatgttctgagctcctatttcttttaggaaatgtatccttccaactttaggaacagaagggatcttttaaaactattcatcaagttaaaaaa<br>gaaaaaaaaagaagataggccaggcgcagtgactcacacctgtaatctcagcattttgggaggccaaggtgggcagatcatctgaggtcatgagtttgag<br>accaccctggccaacatggtgaaaccccctctctacta<font color="green"><u>TGAGACAGAGTCTGCTCTGTCGCTCAGGCTGGGATACAGTGGTGTGATCTCGGCTCACTGCA<br>ACCTCTGCCTCCCAGGTTCAAGAGATTCTCCTGCCTCAGCCTCCCAAGCGGCTGGGATTACAGGCGCCCTCCACCACGTCCAGCTAAGTTTTGTATTTTT<br></u></font><font color="red">AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TGAGACAGAGTCTGCTCTGTCGCTCAGGCTGGGATACAGTGGTGTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTT<br>CAAGAGATTCTCCTGCCTCAGCCTCCCAAGCGGCTGGGATTACAGGCGCCCTCCACCACGTCCAGCTAAGTTTTGTATTTTT</u></font>ggtaaataaataaataaa<br>caaaatttaaaaaagaagatagccttgatatgggctaactaaatgaacaaatatcttctgtaatcttataacgaaaaatataatacataaagatgaaatg<br>accatataccttctaggggtactacggtctatttccttccttcctgttcatctactctggctttatagttcaagtcctcctcacttaagcctccgcctgg<br>gatatgcccactttcaggct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	155093351	155093352	1001979	0	+	1104685222969	NA	NA	SINE	Alu	AluY	gtaatagattccactagataaaacagagaattgggtaaagcaatagaaaaattaagcagataagcagagattacattgcctcttaggttttctattttgg<br>ttcaagtccctcccttggactcagctacatttctgacttttggttacatgagaaaaacctgtactgtaataatgaattattattttatgcttaaactagc<br>tcaaattggctggttatactggcaatcagaatcctagcgtacatacatacacacacacacacagacacacacacacgggtactgttttcacactctgtat<br>gtagttgtgtataaattttgtatatagtcattgcactggaaccccaggctcccctctaacccttctcttgctttatcgccttcttatatt<font color="green"><u>ACACAATCTT<br></u></font><font color="red">GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>ACACAATCTT</u></font>taggctgggcgaggtggctcatgcctgtaatcccagcactttgggaggccgaggagggtgaatcactggaggtcaggagtt<br>tgagatcagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccgaacgtggcgtcggttgcctgtagtcctagctacttggga<br>ggttaaggcaggagaatcgcttgaacccggaaggcggaggttgcggtgagccgagatcgcgtcattgcactccagcctgggcgacaagagcaaaactcag<br>tctcaaaaaataaataaataaaaaataaaagccgggcgcggctataatcccagcactttgggaggccaaggcaagcggatcacaaggtcaggagatcaag<br>accatcctg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	159124419	159124420	1001980	0	+	1104685156227	ACAGACCTTTGGCTTGGAGTT	CTGCCTTCCTCTACCAGGACT	SINE	Alu	AluYb8	acaaacaacgtaactaatgcgaggcaattaagatatctcctgcagactcccagcatttagctcaagtgtctacacgtacaggctattgtttacagctttt<br>caagtctctcatcacaccatcaatattcttggttggattagcacaaacctcgagccaggagtcgagcactggctgggctgcctgcgaagtagctatggat<br>ggatgtgctggtacctgcaggcagctggggtggaatctcagaggcagggggaggagaggcagcctctgctctattctgccttcctctaccaggactgagc<br>ccactatcggccccgcccaccatgagagaggataacccacacctctggaccaccctttgagagggccacagcagtccaaaagcccttt<font color="green"><u>AGGAAACTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGTCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTTAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGGAAACTTTTT</u></font>ctttgggatagtaagttgctaaataaatacttcaaaaataacccacaaatttgccattttgccattgttt<br>ccaggcccaccaccctacctactgaagataactgtgaacttcaactcacttatcatctttctcataaatattcagtccaagggcatcaactccaagccaa<br>aggtctgttcctttcttgttttttatctcgaaatagttgattccatacatttccaggtcctgagcaatcttcaggtattccaacatagcattatctctaa<br>ttggggagagtgaaacaggcagagtcactggtagcactcaatatctagaacagtaaaacctttccagtatttttaaattaaggtgccttgtgtaggatgg<br>gctcaatgctgtgtgctg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	633	304	NA	intron:EZR:NM:001111077:7/14
0	chr6	114175285	114175286	1001981	0	-	1104685231905	NA	NA	SINE	Alu	AluY	gatttgagagtatcaatactgtaaagccaatcttacttctgaactttttcttagttctgaat<font color="green"><u>TTTTTATTTATTTATTTTTTAAGATGGAGTCTCACTCT<br>GTCTCCCAGGCTGCAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCGGCATCCCGGGTCCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGG<br>ATTACAGGTGCCTGCTGCCACACCTAGCTAATTTTTGTATTTTTGGTAGAGACAGGGTTTACACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTTA<br>AGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCTGGCCTCCATTTTGACCTCCTTATAGAACAGCTAACTGTT<br></u></font><font color="red">AAAAAAC</font><font color="green"><u>TTTTTATTTATTTATTTTTTAAGATGGAGTCTCACTCTGTCTCCCAGGCTGCAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCGGCATC<br>CCGGGTCCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCCTGCTGCCACACCTAGCTAATTTTTGTATTTTTGGTAGAGACAG<br>GGTTTACACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTTAAGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACT<br>GTGCCTGGCCTCCATTTTGACCTCCTTATAGAACAGCTAACTGTT</u></font>ttaaaaaaataaaaaaaggaaaattgcctggccaatctagggataccagccaacg<br>atgtggg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	137295902	137295903	1001982	0	+	1104685227002	NA	NA	SINE	Alu	AluYa5	aactttggggtcaatatctcctttaatattcaaataatataacctattccttcaccttatataaccttggaaagcacagacctgcactagcatttcaaag<br>gcgtccttgagcaccactgccctatcttagcagcatagctcagagctgctggttacttcctgctccaggctgttgtgctaatgatcactttgttaaaaaa<br>acagcttcattgaggctgggcatggtggctacacctgtaatcccagcactttgggaggctgaggtgggaggatcacttgcgcccaggagtttgagaccag<br>gctgggcaacataatgataccttgtctctatttttaaaaattaaaaaaaaaaaaaaactcattgaaatataatttagataccat<font color="green"><u>AAATCAGGCAAATTTT<br></u></font><font color="red">TTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGC<br>CGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATCC<br>CGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATCAGGCAAATTTT</u></font>agcgtacaactagtgatctt<br>tagtatatttacagagttgtgcaatcatcattactgtctaattttagaacatttccttcacctcaaaaaataaaaaaccctacacccattggaagtcact<br>acccatttcttcccaatcctccagcccccagcaattactatttactttctgtctccatggatctgcctatatggactgatcatttcttggtatcctaaat<br>tgtttttgcagcctgtttttcttaacctactcctgcactcctgtttttacccaaagcattgcagaacaaagctggcattgggatgcagttgacaagattt<br>actgaacgcttgatgccacctactataagggcatctcaatgtagaaaaggaaaacgtgaaagct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	131099280	131099281	1001983	0	-	1104685228316	NA	NA	SINE	Alu	AluYh9	aaggtcagtattttatcatgcttaacatgatacaaaattctgtttttgaatagctaattgctgctttagtataatctggcagcttacaagtaaatgaaga<br>cacacataaatgtgatctaaaatgaaattgtctaaagatataaaagtagctgtattagggagtatcacaattactctttcttagcctctttgtttaaatt<br>tttcaaatgtgttagtttgttgatggatgatgtcaagttctaacacaaaaaattaaacataaacataaccgttgttcttaaatggcacaccttttctttt<br>ttcttgttcttaagaaagcacttcttttatgacattttctacctttgaaatatcattactggtgcactgtagatagttctct<font color="green"><u>GGTAGTATCTCCTTTTTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCAGGAGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCG<br>GTGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>GGTAGTATCTCCTTTTTT</u></font>aacatccctaattgaactcaaatcagtatgtccttgaaacaacaaaaaattgtaatagataaccagtacattatgaga<br>ctcagacaatgtaaagggatttagtattgtaatcagatataacttacaacaaagtgtattggctcataattactactgagctgcaagtaacttccatggc<br>agtagaaatctgcttatggaaatgactctaactagccttcttttacagggtcaacccaggtaaatgtgggggctgccgaataaatggaaaagggacctga<br>gaagatgccaaacttgctctgggccataaccaagagacccaggtgctgtggtcttgtatgctttttgattagggatgatgcttctgctccaggctcttgg<br>tagg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	88322581	88322582	1001984	0	-	1104685463207	NA	NA	SINE	Alu	AluYa5	ccatacaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtccaaaacaccaaaagcaatggcaacaaaagc<br>caaaattgacaaatgcgatctaattaaactaaagaacttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacagaatgggagaaaatt<br>tttgcaatctactcatctgacaaagggctaatatccagaatctacgatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaacaagtggg<br>caaaggatatgaacagacacttctcaaaagaagacatttatgcagccaacagacacatgaaaaaatgctcatcatcactggccatcagagaaatg<font color="green"><u>NNNNN<br></u></font><font color="red">CAAAACCACAATGAGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCA<br>TCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGA<br>GGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAA<br>AAAAAAAAA</font><font color="green"><u>NNNNN</u></font>cacaatgagataccatctcacaccagttagaatggcgatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaa<br>taggaacacttttacaatgttggtgagactgtaaactagttcaaccattgtggaagtcagtgtggtgatttctcagggatctagaactagaaataccatt<br>tgacccagcaatgccattactgggtatatacccaaaggattataaatcatgctgctataagacacatgcacaggtatgtttattgtggcactattcacaa<br>tagcaaagacttggaaccaacccaaatgtccaaccatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaa<br>tgatgagtt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ZNF804B:NM:181646:1/4	
0	chr7	94715446	94715447	1001985	0	-	1104685461848	NA	NA	SINE	Alu	AluY	agagacaatgacaatttaaaacaggaataggttatttactgcatcttttattaagcaatgttttgtatcaagttgtttatttagcaaccgccactaattt<br>aaaattattattcacggagctggactaacaccgtgaatgatgtatagtcgtattttgactaaagagctgcagagtgaattagctgagaatagcatttaac<br>caaaatagccttgctaattcatctccatttaaaacacacggagaaaccaaaacaagtgttcaatgtgaacaacaaaagagatcattagtggtagtggtgg<br>tggtgattgggggcgggggagggtaattatgttttaatttttaaaagaccattgaaacaataaagaatattgctttaaaagtaatttaa<font color="green"><u>TAAAAATATAT<br></u></font><font color="red">ATTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTACAAATACAAAAAATTAGC<br>CGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCG<br>CGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT</font><font color="green"><u>TAAAAATATAT</u></font>aatctttgaaattgt<br>atatttgataaaactaaacaaaattgctagaattgtgtctcatacgagtgccttaaagtttgtcaatgaaaatatatagactaataatacatactccctt<br>ttatcaagaccttttctcccccacaaatttaaattatgtgaaccaaacaactaaaaatttccagtagtacctggcacttaaattatgcatgtattaagtt<br>tataagatttaattattagaaattagaaatggtttataaaacattgatgtgctatactaaatttgttcctacaaatgattaaatctatttataataaggt<br>aagtgaagaggagatatagtagctttgcttaaggaattagtaatcaaaacatactttgcatacttgaaccatta	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PPP1R9A:NM:017650:8/16	
0	chr7	100392039	100392040	1001986	0	+	1104685014406	NA	NA	SINE	Alu	AluYa5	accaagtcaggaatgctggcagccccttctgaaaaggatgcacgtggcatcccaactcatgacctctgctcccttcccccttctggtgcactttgggttg<br>cttctggaggtgcccctccaaggacccatatgttcctggctggggcactctctaaggctgtggacccctcaggaatggcagcatcgtggtggactacctg<br>gtcctgctggagatgcccttcagcccccagctggagagcgagtatgagcaggtgaagaccacgctgaaggaggggctgcagaacgccagccaggatgtga<br>acagctgccaggactcccagagtgagcccaggctggaagggagggccagggccctgaggtgtcaccccagcccactccagctcagccagggggcc<font color="green"><u>NNNNN<br></u></font><font color="red">TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGGTGAAACCCCGTCTCTA<br>CTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTGAACCCGGGAGGCGGA<br>GCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAACTTACCT</font><font color="green"><u>NNN<br>NN</u></font>tggtggctcatgcctgtggtcccagttatttggaaggctgaggtgggagaatcacttgagcctgggagttcaaggctgcagtgagctatgatccccct<br>attgcacttcagcctggatgacagaatgagaccctatctcaacaataaaaaaaagttaggctgattagcaatctaattcaatctgcacccttgatcctcc<br>cttgccatgtagtatagcatagtcacagttctggggattaggacatggacatcttcccactatgggggcagccaggagggaccacaggctgaccgctatc<br>tttctgcctgctttcactcatctccacacaattccttccttcctctcgctctcttctttcttttcttcttttcttttgtctctttctcttttctttt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	100787123	100787124	1001987	0	+	1104685065844	NA	NA	SINE	Alu	AluYb8	ttcaaggccagcctgggcaacatgccaaaaccctatctctattaaaaatataaaaatcagctgggcttggtggtgcatgcctgtagtcccaggtactcgg<br>gaggctgaggtgtgggaggaatgatgctcaggaggtcgaggtgcagtgagctgagatggcaccactgcactccagcctgggagacagaggcacggtttaa<br>aaaagatgaaactcagatgactgtcttattcctgcagtttctgggatgtattcatgcttgtcctaaagactttcatcctaggctgggcacagtggctcac<br>gtctgtaatctcagcactttgggaggctgaggtgggcggatcaccaaaggtcaggagtccaagaccagcctggcaaacatggtgaaaccctttct<font color="green"><u>NNNNN<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGC<br>CGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTG<br>CGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCA</font><font color="green"><u>NNNNN</u></font>aaaaaaaaaaaaaaaaattagctgagtgtggtggcagacgcct<br>gtagtcccagttacttgggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagctgagactataccactgcactccagcctgg<br>gcgatagagcgagatccagtctcaaaaaaaaaaaaagaggcttttgtcctaaaatactctagcactatatggagtaatgttattcctttgtctccctgtt<br>tctccatggtcactctagcttgggtgcagcccctggcactggaaaaatgagttgaagataataaacgatattgctgttcccttaccgtgatgcccagcag<br>cataaagcccggttgacagcaacatggaatatggaatttctctgttctttaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	49028171	49028582	1001988	0	-	1104685051163	NA	NA	SINE	Alu	AluY	accttgggcacatgtcaggacgtcttgagatgcgtcacaggcaagtccttaaccttggcaaaaccaactttctaaatcgattgagaccagtttcagacgc<br>tttttggtttacaatacacacgcgcgcacacacatgcacacgcgcacgcctttaactaccctgaaacacaagcttccatctttgcagaactactatagaa<br>ttatagtgctctaaatgctgcctgagagagctgtgctgaagtactgaagtacatgtgtccatttattaactaagttgtttaatttttttccctaacgagt<br>tgtaggatttcttgacgtattttggatataagtattttataaaatgtgtgattgagaatattttcctccagcctatgacttgcctatttattatt<font color="green"><u>NNNNN<br></u></font><font color="red">ACATTTCTATATACATGGTAAAATCAGAATGCCATTTGTTAGAACCAAGCTACAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGG<br>CCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGG<br>TAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGC<br>ACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>caagctacaggcattttgaatgggactgcactgaatgtatacac<br>caatttgggaatattgacatattaacaactttgtgtctgctaatccatgatcataatgtatttctttttctatttttagaccattatttatgtattccag<br>cattttttaatacttttcagggactaggtattacatatatttcattagattgattcctatgtattttatatatttaatgctgttgtgataacctttttta<br>tttcatttcaaactatcctttgctagtttttatatataaacccatgtcttgctattttatgaaaaggtttagttaaaattggtgttaattcatctttaat<br>tatttcatggaatttatttttggagctgtctgatctcacatttttctttgt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	56212412	56212413	1001989	0	+	1104685642712	NA	NA	SINE	Alu	AluYb8	ctaagtctgaagacctgagaatcaggggagctgatgatgttaactccaggtttaaatctgaaggcctgagaactggggatgctgctgatgtaataggact<br>tacatcctattcaaaggcccaagaacccagagctctgatgtctgagagcagaagatggatgtctcagctcaagaagaaagttaatttgccctttctctac<br>ctttttgtactgttcgggccctcaatggaatggatggtgtcctcccacattggtgagggccagccttctttactcagtctactgattcaaatgctaatct<br>cttccagaaacatcttcacagatgcacctggaaataatgttttaccagccatctgggcatcccttaccccagtcaagttgacaca<font color="green"><u>AAAAGTAATCATCAC<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTGCTAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAATCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAGTAATCATCAC</u></font>attggtatatgaagaggattaagtcactcagttttgaataggtttgtgagtgctgaactttctttgtcaaggctg<br>attcgagttcataatgatctgctcactgtgtccctggagaagaagtaacaggggaaatgatgctcatggactgtcatggtcgttactagagactagatat<br>ttcttgtattctttataggggtgtgatacagtgattgagggcatctcctgtggagttagacagtctgacattactgttccagctctgtcatttgcttgct<br>ctgtgactgtgggtcaatttctcaacattctaaagtcctgcttgcctcatctaaaacatattaatattttacttgagaattgctgtaaagttctgacaag<br>ataatgcatg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	66247490	66247491	1001990	0	-	1104685488620	NA	NA	SINE	Alu	AluYb8	ggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcaagaggtcaggagatcgagaccatcctagctaacacggtgaaa<br>ccccgtctctattaaaaatacaaaaaaattagccgggcgtgctggcgggcacctgtagtcccagctacacgggaggctgaggcaggagaatggcatgaac<br>ctgggaggcagagcttgcagtgagccaagatcatgccactgcactccagactgggagagggagcgagactccgtttcaaaaaaaaaaaaaaaaaaagaaa<br>ctaaaacagggtaaaatgcccatatgtacaatagccattgtattggtctgtaaaatatgtaaaagactgctaacaact<font color="green"><u>GTGAATCTTGTTTTTTTGTTTT<br></u></font><font color="red">CGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>G<br>TGAATCTTGTTTTTTTGTTTT</u></font>atcaactgctcaggatgggaaagtggcctctctcagtgccagcaccagcaagaagcaaattagtaggcctttcaaatca<br>cccacatctgactctcaccatcgactgattgtatttggagctggcattctggatttttcctgcatatgtttttgtttaaaatgctgtattagtttttgga<br>aataaatataaatgttgcctttgtaagtatcagttaaaaacgttgtattgaaagactgctgtgctgtaggaagtttggatattaaaaacaaagaggaggc<br>caggcctggtggctcacgcctgcaatctcagcactttgggaggccaacccgggcagatagcttcagctcagagctctagaggaggctgggcaacacggc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TYW1:NM:018264:13/16	
0	chr7	57350909	57350910	1001991	0	+	1104685269666	NA	NA	SINE	Alu	AluYa5	agtgcagtggcacaatcttggctcactgcaacctccatctcctgggttcaagcaattctcctgcctcagccttctgagtagctgggattacagtcatgcg<br>ccaccgcgcccagctaatttttttatatttttagtagagatgagctttcaccatattggccaggctggtctcaaactcctgaccttgtgatctgcctgcc<br>tcagcctcccaaagtgctgggattatgcgcgtgagccactgcacccagtccatgactcattgtaatgctcgctagagaacatcttccccacagtggttgg<br>ttagtgaccagatggatgggatgactcagcgatgatgggtgttagtcattctctgtcttaggctacattggcgcttatacaattgac<font color="green"><u>AAAGAGTTGGTCA<br></u></font><font color="red">AGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCACCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAGAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAGAGTTGGTCA</u></font>tggggcacattacgcatggtctgagattgatctagttgttgctattgctgaatatttagcttgctagcagcaaagattgg<br>ctctgagcatgtattacagtgccatctgtgagaaactcctctagttattaggtggcaagttgattaaactgatcttccttcaacctagagatgaaagcat<br>tttgcgtttatttgaattattacctattcccaacatggtctgtcttccctggccttggtgcctctgctggcactaccatacaagggtgaaggaatgcctg<br>atttactgatacggaattaccaaccacattgcttcaaatcaagagatccattaggttggagcaaaggtaattcccgtttttgccattacttttaaagtat<br>tccttgt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	36218691	36218692	1001992	0	-	1104685573744	NA	NA	SINE	Alu	AluYa5	aacctcaggcgatctgcctgccttggcctcccaaagtgctgggattataggcgtgagccacctcacccggccacagccatgctttcttaaggtatacttt<br>tgttaatgatgataaaatatatgcttgttataggaaattttgaaaatacaaataataaatttaaaataaccactgtttacatactggtatattcctacat<br>gtacatgtgtctttgtgtcttatatttagaaactgcaatcatatcatgaatacatacgatagatggttacacagtggccccctagtactcacctcttgtg<br>tagtcggctcccactgagtctgggcttggccatgtgacttcctttggccaatgggacattagcaagcatgatgcaaacagaggtt<font color="green"><u>AAGAACCACTACATT<br></u></font><font color="red">GCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGACTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAACCACTACATT</u></font>aataaccttaaaaaatatttttaatggttatattatattctggtgtatatgtactataatttactgtttcctc<br>tattgctgggtatttaattttttcacatttttctgacttatgattaatgaatatctttgcatatatatgggatgcatttctgacgatctccttaagctgg<br>atttccagaggtggacctattgggtcaaaagatttgtacatagttaagcctcttcaaactgtgtgacagaaaagctatttctagctacactccccccagc<br>aatttagaaatgtatctttcttaacacagtccccactgggttacttcatagaggaaaactgacatctcattttactttgcatttgtttgattacccataa<br>gttaaacatttc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:EEPD1:NM:030636:2/8	
0	chr8	9845312	9845313	1001993	0	+	1104685245064	NA	NA	SINE	Alu	AluYb8	gtttgcttccctcccatgaccgactgagagttttgaacaaatttctgggaaaagcgcaaggatgggtctgctatgagctgtccgccagtgtggtgctgat<br>atgcacattatgccacctagctattgaggagccggggagctgtccctgcaacagccacagcgaactcctgctgcttgactctgccgcacagcaaagaggt<br>caaggtgtgtgtgtgtgtgtgtgtgtacatgtgtgtaatttgcaagtaatgtggctatttctatcattccagtgaaaagtcatccctgacgattgggaga<br>gctcataggctatggcctttcaaaacattcttcactaaggggagagctgagtctggtgaggatggagggctgcggttcaagtcagctat<font color="green"><u>CAGACTCTTTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAATATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>CAGACTCTTTT</u></font>actctctcctagtctctttggtccagggcgatgacttgtctgggaaatgtggaatacaacaaaggagtctgtg<br>tagacaacttgcctagtttggtgctgatttttaggtaagtgagaagtaaaacctgcaagtgcttctttcctgaagcatctcaaggaaatgtgccaccagg<br>gccttcttctgggatgtactctcctaagagcatttctgggctcagggacagccttcaggccttaatttttcttctgagaatcccaagggttggatgtttg<br>gctcatctcttttggtgtcctgtcttgacacaaccttgccaaacaggacatagcccataatttttcttccttgcttcccatctctcagtaaatgcacaat<br>tccaagcatttttgtt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	13605663	13605664	1001994	0	-	1104685164538	NA	NA	SINE	Alu	AluYb8	cctgtaatcccaacactttgggaggccaaagcgggcggatcacaaggtcaagagatcaagtctatcctggtgaacacggtaaaaccccatctctaaaaaa<br>atacaaaaattagctgagcgtggtggtgcgtgcctgtaatcccagctactcgggaggctgaggcagagaatagcttgaacctgggaggcggaggttgcag<br>tgagctgagatcgtgccactgcattccagcctggtgacagagtgagactatctcaaaaaaaaaaaaaaaaaaaaaaggaagtctgaaaaatgacattaca<br>tagtaacaaattttgagtctttagagtattcttagttgtcagaaaaaatcattttcaaagtagatgatcgtgatgaggtatacca<font color="green"><u>CTCAAGGTTTATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>ATAAATAAAAA</font><font color="green"><u>CTCAAGGTTTATTTT</u></font>actgtaaatatttatatacatatgaaacatttatataaatatgaaagcagcattttataattttatgtggaaaa<br>gttacatcctttaccttcctcatttaggtaaaagcctaataaaatgtaatctgtatcaatgcaagatcagttaagagacagaaaccataccagtaatcca<br>aagtgtaaaaacagaatatgaggaaatatgaattcacaacaggggattagccaataagagcaaagggaatctaaaaaatatagctgaggcgggtggatca<br>cctgaggtcaggagtttgagaccagcctgaccaacaaggtgaaacaccatctctaccaagaatataaaaattagctgggtttggtgatgggcacctgtaa<br>tcccagctact	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	15443720	15443721	1001995	0	+	1104685163920	NA	NA	SINE	Alu	AluY	tttttcctggttaagttgtacacctacacagggctcaaaatctgaattgggtttaagatattaacaaaattttaatagctgggtagagacagtgaaaaaa<br>taccctcatatgcagagtgattgtttccctttctctttattcttagtctgaaacaaatattgtgtgttcaattttaactaatgtacctctcttcagcttt<br>taaattttaacatgaaagtaggtcatatgaaattattggtgaagttctgctaagggatttagagaaccactgttaaactgaaattgtatttacaaatata<br>aattaatgattttttttagcacttggtatttgtgtaccatattccaagagttttagatttaggagttcacgagaaaggtagaagagtg<font color="green"><u>CTACTTTTTCTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>CTACTTTTTCTT</u></font>cagttttttttgtggattaccaaagcaaagggcaataaaagatgatgaagaactccatggaaattgtgatgttttatctccta<br>ggacgatccctaggaccacgccaattttcatttgaagggtgtgaaccccaaagtattttaagactgaccttaatcaattttttttttttttgccagtgtt<br>aaggatgcactggtgacacagcctctggaggtcctgatggcaggtgcccaaggtggtcagggtacagctggcttttatacattttagagagacataatac<br>attgatcaatacatgtaaggtctacattggtttgatctggaagggtgggacaactcaaagggggaggggcatccaggtcataggtagatttaaaaatttt<br>ctgat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TUSC3:NM:178234:1/10	
0	chr7	147335334	147335335	1001996	0	+	1104685327568	NA	NA	SINE	Alu	AluYa5	gaatatatagaacattctagcaaatctttcttagactattacatctttgacttacatgtttatgaagaatcatctgtgcctctgattggccttatataaa<br>tacaagggtcatttcagagagcagttcttaactgacttggaaaagcctaagagccaaacaattcagcagctcttccacattgatggcaccagccacatgc<br>agtacatgtgctttacgcatttcattattgcatctctttgtcttatgagtttattgatggaaaattgtgccttgtcttttatcaagtaaacatatttcag<br>aagacatctacatgctatcaacaaaacagagcaaattcagaaaatgtaggacttcgttgtacttgggggattacttcaattgccttaatagtcta<font color="green"><u>NNNNN<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAATAGTCTACCAGAG</font><font color="green"><u>NNNNN</u></font>atattacattctttaaagttcagataaataatttgtgctgcttatgtaggaagtaagctattctccactgtaagc<br>agtcttttatgttgacaatatagaaataatctgtcttataagctacactgcatctaaagccctgacactacagatttatgcatacttctggctgaaaata<br>atattgaaatgtgaaaatgaaatctttcaccaaatctctgggaacataggtttgaggctggctttggaatcactaaaaattcattgattcccgaacgtag<br>actaagtaccataagaactgactagggtacttgattgagcttgtgctgtatggtttattacactggtggtaggaatgtgtcaatagtgattatactgctc<br>taannnnnnnnnnnnnnnnn	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CNTNAP2:NM:014141:15/24	
0	chr7	157141549	157141550	1001997	0	-	1104685310097	NA	NA	SINE	Alu	AluYa5	nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn<br>nnnnnnnnnnnnnnnnntgatcctggtaagcccagtctttgcactccctgccacacaaacaccagggccctccttcctcggcccctgcaacacccagcat<br>ctgcgcccgctgaccctcggggactgggcgatgatggctgcaccctgcccgctgcagaggctgacaggcagggctctttctgcagggagtcttcttaatt<br>tagataaacaagaatatttacttcctgagatctttgccgtgcttctgcctggaacgtgcagcccccacacacagtccctggtgtg<font color="green"><u>CGGGTGCTCACTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGAAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>ACA</font><font color="green"><u>CGGGTGCTCACTCTT</u></font>ctatttagttttcagtggaatacacgtctgttagtgcctaccatgtgcgctgccgttttgggcctctgactcggaagcagct<br>gctgtctccttggcactcaaggccagcaagcgtcatttgggtaaataaatgtcactgctgtgacagcaaggcaggaggaggtgtgggctgggtgctcggc<br>tcttcacaggagccttcctggtggcgccggccagaggctcacggcgacgcggcttcagcggccttttccagggtcctcgctggagtgatcacgcgtgtgt<br>ggccgtgcattgccactccatacataatgaatgtccgggtgttattaggacagctgtcaatagcgcagcacgtcctgctggctgcctcctggatctccag<br>gcc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PTPRN2:NM:002847:14/23	
0	chr7	133232136	133232137	1001998	0	+	1104685011244	GGTATGTGCTGGACTCATGAAA	CTATCTCCTCATTGTCCCCTTT	SINE	Alu	AluYa5	aaagtgcagtacataatcaggtgctacttgtacagtatagactgtgagggcagaaggaacaaaaaacaagaaagagaaagggttgtagtcgggaatggtt<br>ttgcaggtgaggtatgtgctggactcatgaaatttacggaggtggagagaaacataaaggcaggggtggaggaagcaataagacagttgccccctatttt<br>attttatttattttatttatttatttattcattt<font color="green"><u>TTTTTTGAGAAGGAGTCTCGCTCTGTTGCCAGGCTGGAGTGCAATGGCACAATCTTGGCTCACTGC<br>AACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCATCCCCCTGAGTAGCTGGGACTACAGGTGCGCGCCACCATGTCTGGCTATTTTTGTATTTTT<br></u></font><font color="red">TTTTTTTTT</font><font color="green"><u>TTTTTTGAGAAGGAGTCTCGCTCTGTTGCCAGGCTGGAGTGCAATGGCACAATCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCG<br>ATTCTCCTGCCTCATCCCCCTGAGTAGCTGGGACTACAGGTGCGCGCCACCATGTCTGGCTATTTTTGTATTTTT</u></font>tttagtagagacggggtttcaccgt<br>tttagccgggatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacacccggcccagt<br>tgcccactatttaaaggggacaatgaggagatagtttgactggaacagagttcctattagaatctagtaggagataatgttgaataggaagattaagacc<br>aactaaaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	624	447	NA	intron:EXOC4:NM:021807:12/18
0	chr7	136020262	136020263	1001999	0	-	1104685012012	NA	NA	SINE	Alu	AluYa5	actaaaaataaaaagcaataataatactctaaatggtagtggtactgtaacaattcagttgatattttctgctcaaagtctttacaattgacaagtcacc<br>tcttacactgtattttatttttatgtgttaagtgagactactgacttagataatctctgaagtccctttcattatataatattgtaactctgagcttaat<br>tcttctatatatctgatagaatttctctatgatcattgtactagcatataataagtagggttcacactgattcaggaagagtttttaaaaacatatttaa<br>tattctcaggtaatttttcagaactgttaaaaactatttagccttttgacttgtggaaaaaaaacaatagttgtatctaaggat<font color="green"><u>AAAAAGATGACAAGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTTTAAAAACATATTTACCGCCACAGGCACTTTCAGACTGGGAGACACTATTTAGCCTCTGACTTGTGGAAAAAAAAAATAT<br>TGAAAAAAAGAAAA</font><font color="green"><u>AAAAAGATGACAAGAA</u></font>tagaataataacaaaaagactaaaatatttcatagcttctcaattctgtatgccatattttacataaatg<br>ttacaaaattcaaggaagtaggtattttcttcatttttttttaatctgcagagtggtagtggaacttgccaaggacatacagttttagccacagtttaac<br>actagaccttctggtttcaagtccaaacctctagcaccaatctacggctgtttcttgatgacaggcctggtattctccactaaattcatacttttcatga<br>aaaaataataatgtcaagttctccacattaggaactgctatggtctgaatgtttgttttcccccaaaatccatatgttgaagttataacctccaagatga<br>tggtattagtaggt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	106409413	106409414	1002000	0	-	1104685588621	NA	NA	SINE	Alu	AluY	cctgtttccctaatggcagacatggcactcattctatatctcatggtgtactaggccgttcttgcattgcataaagaaatacctcactttgggcgcggtg<br>gctcacgcctgtaatcccagcactttggaaggccgagatgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctc<br>tactaaaaatacaaaaaaattagccggacatagtggtgggcacctgcagtccctgctactcaggagggtga<font color="green"><u>TTTGAGACAGAGTATCGCTCTGTCACCCA<br>GGCTGGAGTGCAGTGGCGCAATCTTGGCCCACTGCAATCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTGAGCCTCCCGAGTAGCTGGAAATATAGG<br>CGCATGCCACCATGTCCGGCTAATTTTTTGTATTTTTAGCAGAGATGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATTTCCTGACCTCCTGATCTGC<br>CCGCCTCGGCCTCCCAAAGTGAGGTTTTTTTTTTGTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTTGCCCAGGCTCGAGTGCAGCTGCACGAT<br>CTGGGCTCACTGCAAGCTCTGCCTCCCGGGTTGATGCCATTCTCCTGCCTCACCCTCCTGAGTAGCAGGGACTGCAGGTGCCCACCACTATGTCCGGCTA<br>ATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCATCTCGGCCTTCCAAAGTG<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGCAGATCAGGAGGTCAGGAAATCGAGACCATCCTGGCTAACATGGTGAAACCCCATCTCTGCTAAAAATACAAAAAAAT<br>TAGCCGGACATAGTGGTGGGCACCTGCAGTCCCTGCTACTCAGGAGGGTGAGGCAGGAGAATGGCGTGAACCCGAGAGGCAGAGCTTGCAGTGAGCCCAG<br>ATCGTGCAGCTGCACTCAAGCCTGGGCAACAGAGCAAGACTCTGTCTCAA</font><font color="green"><u>TTTGAGACAGAGTATCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAA<br>TCTTGGCCCACTGCAATCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTGAGCCTCCCGAGTAGCTGGAAATATAGGCGCATGCCACCATGTCCGGCT<br>AATTTTTTGTATTTTTAGCAGAGATGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATTTCCTGACCTCCTGATCTGCCCGCCTCGGCCTCCCAAAGTG<br>AGGTTTTTTTTTTGTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTTGCCCAGGCTCGAGTGCAGCTGCACGATCTGGGCTCACTGCAAGCTCTG<br>CCTCCCGGGTTGATGCCATTCTCCTGCCTCACCCTCCTGAGTAGCAGGGACTGCAGGTGCCCACCACTATGTCCGGCTAATTTTTTTGTATTTTTAGTAG<br>AGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCATCTCGGCCTTCCAAAGTG</u></font>ggacatggtggcatgcgccta<br>tatttccagctactcgggaggctcaggcaggagaatcgcttgaacctgggaggcagagattgcagtgggccaagattgcgccactgcactccagcctggg<br>tgacagagcgatactctgtctcaaacaacaacaacaacaacacccacaaaagaaatacctgaggctgggtaattgaggaagacaagaggtttaattggtt<br>catggttctgcaggctttataggaagctggcgccaacctttgcttgtctt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	109070589	109070590	1002001	0	+	1104685587973	NA	NA	SINE	Alu	AluYb8	tcagcaaagattatctactttaagagagacttaagggtggaggtttgaggtaaaaccaagagatgtcagttatgatggtttgaaggaaaagtataaactg<br>gcaatgtaaacaagggcagggtatttatgagtagttgagaatggtgaataggagcatgactagacagaagatagtagggatgacaagtttttggggtgca<br>gttcaagttggggcagtgtcaggaatgagactggggcctaataaaatggagtgtccatacaggagcttaaatgggctgtaccctgtagcaccccaaggac<br>agacctgaattctgagaagggcaaggggtaaaagtattgtccagtcctttttaagttggaggctgagcttggtgaggtgtgttttt<font color="green"><u>ACTAATGGTCTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTTTTTACTAAAAATACAAAAAATTACCCGGGCGGGGTGGGGGGCGCCTGTAGTCCCAGCTACTCGGGGGGCTGAGGCAGGAGAATGGTGT<br>GAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTCCAGTCCGCATTTTGGCCTGGGGGACAGAGGGAGATTCCTTTTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>ACTAATGGTCTTTT</u></font>tgttttacctttcctgaagactgaggatggtaagtggtatgagggttccactgaataccaacagcct<br>gagaaactgcttgggtgatttgactaataaaggctggtccgttgtcggactgtatagaggtgggaaggccgaatcgaggaattatatctgacagaaggga<br>agaaatgattgtggtggccttctcagaccctgtgggaaaggcctctaatcatccagtgaaagcgtccacccagaccaagaactattttagtttcctgact<br>ccaggcatgtgagtaaagtcaatttgccagtcctgggcaggggtgaatccccaagcttgatgtgtagggaagggaggtggcctgagaaattcctgaggag<br>tagtagaatagcagatgga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	117870551	117870552	1002002	0	+	1104685586189	NA	NA	SINE	Alu	AluY	aagtgggagctaaatggtgataactaatgaacacaaagaagggagcgatagacactggggtccacttgaggtacagggcgggaggagggagaagagtaga<br>aaagataaatattgggtactaggcttagcatctgggtgatgaaataacctgtacaacagacccccatgatatgagtttacatatgtttcaaacctgcaca<br>tgtacccctgagccaaaaacaaaagtttcaaaaatttcttttttgttctttagcatagtttcataattttttatatggtatattctcatgtcttggtaag<br>tgtattaatagaaattgtatatttttgttgtgtcccaagcttcctctataattttattttttaagtaaattctttttatgtgagctt<font color="green"><u>AGGAATTATTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AGGAATTATTTTT</u></font>attgtttaccaggattatgactgaagattatatataaacttttaaaaatctcagtttctttatttgtgtgatagagata<br>aggagagtcattacatttcatgtatcttatcatatttacaaactctttctttgtgccagtcactcctgtagcagacgccaggagaagagaagtcacaaag<br>acgactggtttttgccttgatggagcttacagtctagaagagaagatagatattaaacaaagtcttcacctacaatgatgggaagactacaaaagggaag<br>tgaacgttttattagagcaattaatggagaattaatgaattaatttgggtataagactatagtgtcaaagaaagcctccctagggaagaaatgtttcaag<br>tgtaactt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	96726456	96726457	1002003	0	-	1104685364674	NA	NA	SINE	Alu	AluYb8	agacaactaggcaatgtaataggcattttttttttaacatttccatagtatgccccaaggtgctattgcttatcttgtttagaactgtgctttaatgtgt<br>ttcctcagttgtaacccacactggttctagtttggggttttttcgttttattttatttacagggcccttttgtgtatctcttctagtgcctggcttccct<br>ctataaacctattcgcagagaattcagttctctcaagctgctgtcaagctgcactgaagcttttcctgagatccctcttctgagacaagatgattctctt<br>tttattctctctcccttatttccatcaagacctccattcagaggatagtgtaaacagatacacccaattatacaaaagtgtccatg<font color="green"><u>AATGAGAACTGTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAATCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AATGAGAACTGTTA</u></font>ttctcatctgaagattgagtacaaggctacctcgctattcaaggtgtggtctgcaaaccagcagcactgg<br>cgtcactttggagcttgttagaactgcagaatcttgggcccttctccagaccaatttgcatgtgcagtagagtttgaggagctctgcgttaccaatagtt<br>aaaataattagttaggcgtgtgtctatgagccaggcagcacctgacgagactgaatttcctcacccttaaaatggaaacaaccattcaaatgatcttcca<br>ctccactcttccctttctagtcatcttgatatgctcctgtgaagttcacctccttgctaaatgttgccatcctctgcctcctttcaggaacatagcagca<br>cacatgcaatctccta	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	110148276	110148277	1002004	0	+	1104685367763	NA	NA	SINE	Alu	AluYa5/8	ttaattcctttgggtaaataccaagtagcatgatttctggatcgtatggtacgaggatgtttagttttataagaaactgtcaaactgtttttcaaagtag<br>ctatatcattttacattcccacccacaatgaataagagtttctgttgtgccacaccctcatgagcatttggtgttgtcagtgttctggaatccggacatt<br>ctaacaggtaggtagtggcatctcactgttgttttcatttgcatttccctgatgatgtatgatgtggagcatctttacatatgcttatttaccatctata<br>tatcttttgttggtgaggtgtccgttcaggtcttttttggagcccattttttattgggttgtttgtgttcttattgtttagttt<font color="green"><u>AAGAATTCTTTGTATA<br></u></font><font color="red">ACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGA<br>GACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTCTTTGTATA</u></font>ttatggacaatttttttgttgttatttttttgattttttta<br>aattttatttttattatactttaagttctagggtacatgtgcacaacgtacaggtttgttacatatgtatacatatgccatgttggtgtgctgcacccat<br>taactcgtcatttacattaggtatatctcctaatgctatccctcccctttccccctaccccacgacaggccccggtgtgtgatgttccccttcctgtgtc<br>caagtgatctcattgttcagttcccacctataagtgagaacatgcagtgtttggttttttgtccttgcgatagtttgctaagactgatggtttccagctt<br>catccatatccctacaaaggacatgaactcatccttttttatg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	110170781	110170782	1002005	0	-	1104685367776	NA	NA	SINE	Alu	AluY	tttgtcaatgtttgtcttggaagatagtcaatagatctctctaaatttccattaatcaagttttgggtaataaatggctgaataagccttatattaggta<br>tcactactagatccaaggcaaaagaaatctaagagctgacaatagttgtttaggtctttcttctgtcatctagttatctttaataataagtattatataa<br>accaagtattacagcaccatttaaaatgcagtatatgtttcctttaagttatggctcattattcatttcatgcatatctaaaacacttaaattttttagc<br>agtttatttcgctgtgtccagttacgatgcatatatcagctggagtttatgaagtaacagtgtgaatgattatatgtatactttttt<font color="green"><u>ACAAAGTACACTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>ACAAAGTACACTC</u></font>gtttctagctatgtacacagaactatattcctttcaagaaatatgagaaaattcaacccatttaaaagtatc<br>agcatgttgatttcaagtttagatttcttttttcagctatgagaataaatatttatcatctgttcattatgtttaacaaagaaggaaaagaaacttcaag<br>ctaagtttgtcagtaacctagaacaattgtatatagataaatgtgtaaatgatataaaagtattttattcctatatcatttcataaacactgcaacaaag<br>ttttgcacttggttcactagtaaaaccactattcaactaattatatgcacattcaggtgatctaaaagtataacagaatttttaggtatgcttagcagga<br>aaaaaccgattttta	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TRHR:NM:003301:1/2	
0	chr8	107277064	107277065	1002006	0	-	1104685367085	NA	NA	SINE	Alu	AluYb9	ctctttcaattattttaaaagatacatgttaaattactgttaactatggaactatggtaaacttttgtgctaccaaatactagatcatagtcatgtaatc<br>aaattgtatttttgtaccctttaaccatcccctccttcttggcccccttccctgctacccttctcagcctttggcctccatcattctactcccagagata<br>actttagtaaggaattggggtcgtgccaaataaataaaagacaaaatggcacaatgaagcaatttttttttatcaagatgataagcctgattggtggtga<br>ccttgaaagctttcatgaagattttaaagtgacacaatgttaaattagggacactagacagagaaagcaatggctcatctgtattaagtt<font color="green"><u>AAAAAGTGTC<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAAGTGTC</u></font>taacaggaggaaaattcaagtggacaaaaaatgaattcagaaagaagacttgaatcacataattaactttcagggactcagtctactt<br>tctcatctgataaaatctttcaggatgacatgctgtaaaggtcagcattctgttacttctaagtagaaaaagttcttattctctagtttcttagtaaaga<br>tgacttgcagttaatgcctaaattatgatttctgtgaaacattcttctaaccaggggttagtggaaatcataatgtaaataaaaataaaattaatatgac<br>taaataataagactaagaagaagtgagtgttcatgatgaagtctccaaggacacagagcctgtctttaagattagaaatttgtagggaaaggtgtattct<br>ca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	72077145	72077146	1002007	0	+	1104685424812	NA	NA	SINE	Alu	AluYb8	atgagatcagccttaaaaaggtagaatagtttgggttccacttttatcatatatatatattggaaaatatctatcagaatgtttcatatgtttaagtaca<br>aatgatatgatgataataaatcaaatcttccaagtctttaattgaatactggctatcatgaagtcctaagagaaattccactactgttttcaggccattg<br>tgataccatataaggaattggctgtcattttagtaaatgtagttaattctatcatgtcctaacaggctgggtcagtggtcaaattgttggagagattggg<br>gttgacgatagtctataaactacgaggaagggctcaccatatgtggtaagagttttgtttcaaataattttaatctaatttaatgtt<font color="green"><u>AAAATAAAAGCTA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAATAAATAAATAAAATAAAAA</font><font color="green"><u>AAAATAAAAGCTA</u></font>aagccgtggtaggtttttgttttttttccgaaataattccagttgtgtttatctatattattttt<br>cttttagtatgttctgtctctcaattaacagcatagtatattagctttctaattctgtttattgtatctttaagtaaacttaatttatataaaatagtct<br>aaaataaagggcaaaacacatacattcaacaggcaacttctgttttatacggtctccctttttactcttttttattgatactattgtaactacaataaaa<br>acacacttgcctttaaatatgccattcggtgaagcttcacaaccactacaagtcctagtgaaaatgctgaaactcatgctttgagaagtgaatgatgatc<br>acctaagctgtaaaaaaactca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	85599830	85599831	1002008	0	-	1104685024411	NA	NA	SINE	Alu	AluYa5	acaagtgataaaaagaaaaaatagagagctgtcaggcattggaaaaaatatctatattttgacacaaaaatggtgtataacagtcaaagaaatgttacaa<br>ctaaaaaacaaatgacaagggaaaatgaatttttcagtgcaaacaaactgtctgtttttaatttagaagtttggatggagctcatgtaaagtgtctatct<br>atgaaaactcctgtaaaataaaagataaactgtaaactactgttgctgttgttccaaagaattttctatgatggtggaaacatttgatatctatactatc<br>caaaaagttagtcaataaccacatgtgacttttgaacccttcaaatctggctagtatgattaagacactgtatttttaattttacttagt<font color="green"><u>CCTCAATTTT<br></u></font><font color="red">GTCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>C<br>CTCAATTTT</u></font>ccgtattttaatgaattgctctaccccgaaaggctaacagggatcttgccttctagacatataggataaaagtaaatcagaaatacatcta<br>gctatttatgtttcattcaaacctagagaacggctgtttttggtcctgaaaacttaggaaagatacaatagtgtagctgtatttcagaagaataaaaagt<br>tcaagtatctgtcatatgataactaatttaaaagattaagggttcattccggaaatatcaggctgaggtggtaaatgctctgtaaaattataaagaaatg<br>tgatcagaataaataaagccttttaatttctatttgagagagatttttacctttggatccatatatgatacatttattataaattaaaggcagctcaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RALYL:NM:001100391:1/9	
0	chr8	72368611	72368612	1002009	0	+	1104685424877	NA	NA	SINE	Alu	AluYa5	gtaattccatcaatgaggccagcattaccctaatactgaaatgagataaaggcattacaagatatgaaaactagaaactagaataatatttctcatgaac<br>ataaatgcaaagatcctcaacaaaatattagcaaactgaatccaacaatgtataaaaagaattatatgtcatgaccaagtaggattaatccaagatatat<br>aaggctggttcaacatttgaaaattaatgtaatccatcacatcaatgagctaatgaagaaaaaccatatgatcaaatcatcagatgcataaaaagcattt<br>gacaaagtccaatacccattcataataaaaaaactcagtaatctaggaaaggggagagagcttcctaaagctgacaaagaacat<font color="green"><u>AAAAAACAACTTACAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGACTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGCAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAACAACTTACAG</u></font>ctaacattatacttcatggcgagaaactagatgtttcctttctaagataaggaacaaagcaaagatg<br>tcccctctaccactcctgttcgacattgtacaagtccttactaatgcaataagaaaataaaaggtatacaaattgggaaggaagaaatataactgtcttt<br>tttcacaaaaaacatgattgtctatgtagaaaatattaaaaaaaaaaatcaacaaatacccacccccaaaaccaaacaactcttgaaaccaatgaagaag<br>gttgcaggatataacataatagataaaagtcaaatgccttcctatataccagcaatgagcagttggaatttgaaattaaaaacacaccggccgggcgcgg<br>tggctcacgcctgtaat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:EYA1:NM:172060:7/16	
0	chr8	49208047	49208048	1002010	0	-	1104685419985	NA	NA	SINE	Alu	AluY	gcctggctctggtgctgcttatcctaacccgcccacatgataaacagaaccgcacacacctcgaaccagtgtcaggtcctggctttgattctgcgctatg<br>tttacaaaacttgtacccactgggggaaactgggggaagcactgaatctacccatacattttcacagcttcctgtgaacctataattatttcaaataaga<br>agtttttaaaaatttgagcagaatctagaaaatgtgaagaatgcatatactctagaactcagcaaaaatatcccagtaacaaacagtttgaaaatgtatt<br>ttttaaaagatacacatgaaaaaaatacaaaacaactaacactaaatttaacaaaagataaataagatttttgtgaggaaaattat<font color="green"><u>AAAACTTTATTAAA<br></u></font><font color="red">GCCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGCCCATCCTGGCTAACACGG<br>TGAAACCCCGTTTTTACTAAAAATACAAAAAAAAAAATTACCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAACTTTATTAAA</u></font>tatctttctaaagaatttaaacagagaaataagccatcatgtttgtggattaaaatactaaatataatagagat<br>attagttcttccccagtggatctatagattcaatgcaatttcatttgaaacccaacaagtttttttgtgaaacttgataaactgattgaaaaatgcatag<br>gagtaaaaagcagagaatagccaagacactcctaaaataagaataaggtgtaaggaattgactcacagatatcaaaaatcattgtgaaactacagaaagt<br>aggataatgtggtacttatttagagacagacaaattgacaaagagaacagaatggaggctagacctagaccagcacacgaatggaagttttctgtatgcc<br>caagctggtatt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	59778544	59778545	1002011	0	+	1104685422223	NA	NA	SINE	Alu	AluYb8	ttcatgaatgggattagggcccttgtaaaagaggtcccagagaactgtcttgcttcttccaccacgtgaggatacagagaataggcttctatgaatcagg<br>aagcaggccctcaccagacatggaatttcccagcaccttgatcttggacttcccagcctccagaattgtaaggaataaattattgttgtttataaggtac<br>ccagtccatggttatagaatcctgagtaggctaagataatacagacattgaaatgaaataaaacatattaaggattacagtgataaattgctctaaatta<br>ggaaatatgaccagaaaaccacatgaataacttaccaacaatagcaacaacaaaattagacatgtatcaaaatgagtgttttccttt<font color="green"><u>CAAAGTCACAATA<br></u></font><font color="red">AGGCAGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>CAAAGTCACAATA</u></font>ttggcaagttgaacacttactagaaagattttatctaaaacagtgactttgccttgtgagcatatagaatgttaggt<br>atattagttgtgtagcaaaatcatcttctaaagtagatttgaggaaatgtgattaataaaatagatacactgagtaatatacagttaggtacaaaataaa<br>actacactgttaattaatgtcttttcctatataacatgtaaatgaattttccaggcaattccaagagagaaagtttaaaaatatcttgagaaatagcagc<br>atttttggaataaaggaaaaaatatctgcaatccaattagaggttacaaagcatttcaacttatattttctcatctgatttccattacaagctggaagaa<br>tagatgaaat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	22539352	22539353	1002012	0	-	1104685036758	NA	NA	SINE	Alu	AluYb9	ggtgagcattcagggtgctttggtggcttcacccacttagcaccttgttaagacagggagccccttatggacactgttgaggtagaggattcctgtcttg<br>gggataagccctttgtttcatcaaaatctactccctgggtctgacttagtttgggggcatttaatgctttggtaaagttaatatcctcttactccctggc<br>aaaactgttcattactcttacctcaaatgtacacttgatttgctgaggctttttaaaaac<font color="green"><u>AAAAACAGGCCGGCCACGGTGGCTTACGCCTGTAATCCCA<br>GCACTTTGGGAGGCTGAGGCGGGTGGATTACTCAAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCCACTAAAAATACGAAAA<br></u></font><font color="red">AAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTG<br>AGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACAGGCCGGCC<br>ACGGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATTACTCAAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAAC<br>CCCGTCTCCACTAAAAATACGAAAA</u></font>tagctgggcgtagtggcacatgtctgtaatcctagctctttgggaggctgaggcatgagaattgctggaacccag<br>gaggtggaggctgcagtgagcagagatcataccactgtactccagcctgggtgagagagcaagactctgtctcaaaaccaaattcctggtcatgtccttt<br>gagaggcacatctgggagtcctgctctgtgtggtagctgagctcctggaacctgacagtgagtctgccagcatcctctcaactct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:BIN3:NM:018688:6/9	
0	chr8	22835915	22835916	1002013	0	+	1104685036839	GGGTCTTGTCTCTGTCCCTCT	GAGATCAGGAGATCCCCAAAC	SINE	Alu	AluYb8	attgttatttgatgaggtgggcacagagccacagagagtgccctgaaggacagggcacatgccagggaaccagggatttgggtcttgtctctgtccctct<br>cttcacgcccatagggcactgccaggccagcgtttgaacatagcgtattgccccacctaggatgatgggaaaggggcatgtgcaggcctctgccctgctc<br>agctgctttagcaaagtcttggagaaggacacggagacaaatttatttgatctgcagatggcacagagctggtaaccaacaattctgatgatcaaattga<br>cttacgagacgacctggacaaacctgaggtgagctgaatcaaaaattaaagttactgagaaaatacactttaaattttgcatt<font color="green"><u>AAGACTAGGCACGGTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAACAAAAACAAAAAAACAAAAAAAACAA</font><font color="green"><u>AAGACTAGGCACGGTGG</u></font>ctcatgcctataatctcagctctttgggaggctggggtgggagcatcac<br>ttgagcccaggaatctgagaccagcctaggcaacatagtgagaccctgtttctaccaaaaattaaaaaaacaaacaaacaaacaaaaaacaaccatggta<br>gtgcctgcctgtgttcccagctacttgggaggatcacttgagcccaggaggtagaagctgcagtgagccatgattgcatcaccgcactccagcctgggtg<br>acagagcaagaccctatctcaaaaacaacttgcattcaagccagaaaacctcaaaggtgccaccttcctgtgtgcccttgctgcttgtggtttacctgac<br>atggaattcattctaatttccatgtggagagttt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1072	720	NA	intron:PEBP4:NM:144962:2/7
0	chr8	23098363	23098364	1002014	0	+	1104685036929	NA	NA	SINE	Alu	AluY	gaggctaccatgttacccagagcctaaaaaaaaaaaaaaaaaaagaatattttattcctggtttacgaattaatgtctttaagtccaccaatcccactgt<br>atattttgtgcaattaagaaattcactttaggcatgtgaccagtaagtactttattgctagtactatctctgcaaaagagcagtacagtgtgaaacaaag<br>caatgcaagcgtgggtgtgaaatgtggccccttgttaaataggacttcatgatgaactatattaaagaagaattggcaaactgccagtgtatttctttac<br>aatacttcttactttaccttcatcaagactaagcgctttaaccacgagcaatgtcaattagccaaacctttcaattttctatcagattt<font color="green"><u>AAAGAATATTT<br></u></font><font color="red">TGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCAGGCCACTGCACTCTAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAATATTT</u></font>tacaatgtacttgcatggatcattgatgacatactaggactttctattttgtcctaaatttttttctg<br>tcttgttttaataatcattcaatttatattagaacatattcatatattcatcatacaagactttttctcatacaaagttattctcttttctttctaacct<br>tcattaccaaaaatatatcttcaccataatttttttcttttccttttttttttttttttttgttagaaatgagctttttggcaggtcacccaggctgatc<br>ttgaactcctaaggtcaagcgatccacttgcttcagcctcccacagtgagccaccacgcctcccataaatccataacttacttcacatctctctccccta<br>cttactggttcctttctacct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	35188580	35188581	1002015	0	+	1104685194302	NA	NA	SINE	Alu	AluYa5	gtgagaataaattcttgcacacaccaagctaaaagacaagcgtttgattagcagtgacaaaaataatatacagattttccttgtagccatgccttaaatt<br>gaatgccaacttctttctaatttagtgaaatcattgttgtcacatgtcacttagtaaggagttaatagaaatgtttataaataatatggtttttacaaat<br>ctaaagcagattttagtttctgtgtcctcaattcatttgttctaaagttgacttaatattcagaaatttctctgttaccatgtatttccttatgatcatg<br>atcattatcaaaattatcatcatcacatttttacagataatacaaccatctcatgatcacacaggaaaagagaggacatgtctgc<font color="green"><u>GGGAGTTACTCTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>GGGAGTT<br>ACTCTTTT</u></font>ttacagcaatggaatcaggacacttatcactaaaagaatgaccatttatccaatgactaagataatttacccaataaaacagcttcaaactt<br>tattttattttacttttgaggagcaattaattaatgttatttacataaaaagaaataaaatactattttacaaatgagttctagtcaaagctcaaattat<br>gcatcagacatattatttattattttgcatagggtgatcacttccacagtccaggattctttgtcagcgaacttttgtgataggatctgtcctgtgaata<br>ttcatactttttaaatagctaaataattggctacatcaaagcctgaagtacccctttgccctcttaggaaagatgatagttgcttcttaggcc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	24835019	24835020	1002016	0	+	1104685037370	NA	NA	SINE	Alu	AluYd8	tcaattgcctggttgattaattaattcaataaatgtttattgaggactagagcttggagatacaatggtcttctcttataaaattacttactttgttgtc<br>actgccagccatcacactattattgaaagagaaagcaatttgaaattcatgtgtccaaatatgttcagtgacagggagaaactacatttaaactaagcac<br>aaatctccacgtgtttaggatataagagtacctttcctctgatgacaattggtctctgggcacaatgacatcaagccattgaaaaacagaatttctacct<br>tgccagtagactgtcttggagacactattttattttaaatattgtgaggattatcaaagttcatttattctcaatcttaaaacata<font color="green"><u>AAGAACAGATTTTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGT<br>CTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGTGGGCGCCCTGTAGTCCCAGCTACTGGGGAGGTTGAGGCAGGAGAATGGCGTGAACCCGGAA<br>GGGGGAGCTTCCAGTGAGGGGAAATCGCCCCACACCACTCCCGCCTGGGGGACAGAAGGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAACAGATTTTT</u></font>tttaagaaaaacttcctctgggtcacacactagtagatgacagaactgggatttaactcataggaaaggtccagagtat<br>gtactcttttttatttatttattttattttttattttattttatttttttttgacaggctctcactctgtcacccagactggagttcagtggcatgatca<br>tggttcactgcagcctggagcatctgggctcaggtgatcctcccacctcagcctcctgagtagctgagactacaggcacatgccaccctgcccagctaac<br>tatttttgtggggtttttttgtagagataagtttcgtgatgtttcccaggctggtctcaaacccctggactcaggcaatctgcccatttcagcctcccga<br>agtgctg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	28185390	28185391	1002017	0	+	1104685684309	NA	NA	SINE	Alu	AluYa5	ccttaacagaataagtggacaaaaacaaaacaaaacaaaaaggattagtaataaaacctaggaaaaacaaacaacagaaatgtaaacatttgttttttga<br>aattaaggggaaaatactctattaagtaacttttagaacaaaatataagtcaaagcagaattacagactatttagacagtaacagtggacacctacatgt<br>tggaatgtataggaacaagctacaatatatttgacaggaaaaggcataaaatgtgatagttattaattagacctacctgaaatagtcatggggattaggt<br>cctctctaccctcatttatattttgccatctcactatgttatggaactcataaaaaaaattcaagaaagttgcctttaaataac<font color="green"><u>TGTCGCTCACCATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>TGT<br>CGCTCACCATCTT</u></font>aaagcgaaatagaaaaatgtataattatatgaaagataaggaatgataataaaaaatagaaacatgggatatggagaggcacttaaa<br>agatgctttttcactctgataaacaagaatttggtaaaaataaatatcataattataataataattaaataaatattaaaagattgatttttttcacaac<br>cctatataaacaaatttgggaacttggatgaaacagatgattttctaagaaaataatattaccagaacagataaattatagccagaaaagatctgaaaaa<br>cttccatcaacaaacatctccccattccaataaataagtaaatctcttatttattcatacatagtttatagcaaagatgcttttatgaaaagaatta	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LINGO2:NM:152570:5/7	
0	chr9	34105521	34105522	1002018	0	+	1104685682496	NA	NA	SINE	Alu	AluY	aagacaggtgggcaacctaagtctgtggagaggttgggaaaggaaagacaagtgaaatcaaagcagaagaatctattcactatcccaatctgagaaagtg<br>gggaggagcaaaggagagagccaagaccaagaaacacaacagaaaatggacagacaatatgtatcaaacattaaaaatatgtatagcggctaggcgcggt<br>ggctcacacctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggccaacatggtgaaaccctgtct<br>ctactaaaaatacaaaaaattagccgggcg<font color="green"><u>GGTTCAAGTAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCAGGCCACCATGCCCAGC<br></u></font><font color="red">GTGGTCAGATCAGTGAGCCGAGATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCAGTGGTGGGCGCCTGTAG<br>TCCCAGCTACTCATAGACATATATATATAGCTTGTAATACCAATTTTAGGAACTTACACTGAGGCAGAGCTTGCAGTGAGCTGAGATCACACCACTGTAT<br>TCCAGCCTGGGCCACAGAATGAGACGCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GGTTCAAGTAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGG<br>GACTACAGGTGCAGGCCACCATGCCCAGC</u></font>ggtaggcggaggttgcagtgagccgagatagcgccaccgcactccagcctggcgacagagcaagacttcgt<br>ctcaaaaaaaaaaaagtatatatatacacatagcaggaccctatagtctctgcagtctccccatagacatatatatatagcttgtaataccaattttagg<br>aacttacactgaggaactagtgatgggtgaacagtttgaactactgtacatcttttttaattatagagacagggtgccactttgttgcccatgttgtaat<br>aaaacccacctgggctcaggcaatcctcccgccttagtctcccaaagtgcgggattaca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:WDR40A:NM:015397:2/9	
0	chr9	38757775	38757776	1002019	0	+	1104685502590	NA	NA	SINE	Alu	AluY	agttaggacaatcaatagatgtagatatgtagtataatgccagaccgtggtaagtgctgtgagggaagctgaagctggtagtgagatggagagtagctgt<br>tgaggacggttgtcagagaagatttctcagaaggactagtattttttggtgaagaagttatcctcctcttctctctgagaaaaacccatgcactcccacg<br>tgaacctcttcaagcgggctctcgtgttgctctggcgcagccctcttgtgctttcagtgctcccttgatttctgacataacaaggtaactgttcaccgac<br>tacttctattgcccagacccggaattaaccatttcctcaaggactggcattattattattaatgcggtataacttacacagagtat<font color="green"><u>TAGTGTACTTTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTTCTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>TAGTGTACTTTCTT</u></font>tcttacatgtacaattcaatgaacttttacatacttatacagcatacaaccacttctcatataaagatatacaacatttctagc<br>acctagaaagttccccaggggcccattgcatgtattacctcctcccccatgctgtatgcagtggtaattacaatactctccagatctgtgttatttttct<br>caacgttatgcctttgagagtcattcatattcttttgaatggcagtgatccattatttttcattgctatatagtattccattcaagttttgatttgggtt<br>gtttgcagttttggtctcctgtgaataaaactactataacaatttttaaactgagtttactgtcataatgatgacaccaagccaattggggtttccctac<br>tg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	74421366	74421367	1002020	0	+	1104685331008	NA	NA	SINE	Alu	AluYa5	aagctcaaactgtgacagggtcagggacaggtaaaattcacaaagttggtttacagcagaactgtgctacaattatctggattcagatccaagtcccctc<br>caaatgaatcacaaccacttctacctttataattccaggccatgaaagatcactgttttagtctgcgtggtgcagtggaacagatagacctcggtttgaa<br>tctcagctctactgtttactagacgtgaaatggggaaatctaaaatgagtaagtatacacagaaacacacattacatacatatatgtaatgttcaggatc<br>attacactgaactttagggcttagtactaatgtacaatcaaggttgtgttagtactgagcagtatatcttttattgttgaagtccaa<font color="green"><u>AAGAACAGAGCAG<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAACAGAGCAG</u></font>atatcaacctaatttgtaagtgatgcattttcctaaactaaatgcccaataatggaatgggctagaatattgcaggacagggctg<br>tgaatggaggaaagcagttggaaaatcaatccttttaagggcacaaaaggatgaatgaaccacattcccaagaacctgctcccacccactgctgttccca<br>cccccgctgtagttggtagcatgttcacaaggaaggagctggctagctttcatgggagccacatcatccatcaaaacacattagtgttgttgatttgaat<br>gttgtttcctttgtaggtctgcttgctttgactttgtaaaattgtttagtcttgccattattatataaggactataatcataaggcatttatatttcatt<br>tt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TMC1:NM:138691:3/24	
0	chr9	10451264	10451265	1002021	0	+	1104685688749	NA	NA	SINE	Alu	AluY	ggctacaaaagcaaacataaataaaagaaacggcatcaaataaaaagtttcttctcagcaaaagaaaaaatcaacaaaatgagaaggtaatcaacagact<br>gggaaaaaacatattttcaaaccatataacaaataaggggttaatatccaagatttacacataattcatacaacttaatatagtaagaaatatataacct<br>gattaaaaactggacaaaagactcgaatagacatttctccaaagatgacataaaaatgtctaacaaggacatgaaaaagtgctcaacaccactaattcca<br>caggaaatacaattcaaaactctatatatcctcataactgttaggataactattataaaaaagataagagataacaggtgttggt<font color="green"><u>TTTTCCCCCATTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>TTTTCCCCCATTCTT</u></font>aggaaactcttgtactgtgttggtgcaggcattatgggaaacagtgtcagatttctaatgaaattaaaaatagaactaccatt<br>ctaagaaaataaaatcaccacctcataaagatatctgcaatcctatgttcattgtagctttattcacaatagtcgagctatgaaaataatctaggtgcct<br>atcaatgaaaaaatggatgaagaaactatcatagtttatgaacattattcagccttttgcaaaggagatcctgtcacttgtcacaatatgaatggaccta<br>gaggatactatgctggatcaaataagccagacacagaaaaaaacatgttgcatgatcttccttgcatgacattctttttttttttttttttttaagatgg<br>ag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PTPRD:NM:130392:1/44	
0	chr9	21251950	21251951	1002022	0	+	1104685685766	NA	NA	SINE	Alu	AluY	aatattattcagctttttacaatggagtattatttttcataatattattcagtaaaatgtggtatatacatataatgaaatgttattcaatcttattctg<br>acacatgctgcaacatggatgaaccttgagtacattatgctaagtgaaataagccagtcacaaaatagcaaatactgtatgattgcacctatatgaagta<br>tctagagtagtcaaattcataaaaacagatagtagaatagtggttgccagaggcttagggatggcaggagctggaaggagtggagagatgttatttaagg<br>agcatagaatttcagttttgcaagatggaaaagtctggagattagttccataatgctgtgaatgcagttaatactactgaactgtatacc<font color="green"><u>ACCATTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>ACCATTTTTT</u></font>aaggtggtaaattttctgctaactgtactttatcttaattttaaaaataggtaacaagggcaacattattccttggaaaacaa<br>tgctaaaatataacttagctaaattcagcccagccaagcagtgattaaaggatgaggtagaggggaatcaacattggagaagggatgtagaccaaaagca<br>gcagatgggcatgggctcgaggaaaagtcatcattcctggtctaggggttggctttcagatttgattattctaggcttcagagttaagaaggacataacc<br>aagtcacaagagtttatatacagaaaggtaaatttttgaaagtacagtattctctgtggataataggtaagtgttaattgcactaagttctttcctagtg<br>gattaat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	28950620	28950621	1002023	0	+	1104685684051	NA	NA	SINE	Alu	AluY	agcaaataattagaacacctataatcacagcattttgaaaggccaaggcacgaagattgcttgaagcctggtgttcaagaccagcctgagcaacacagca<br>agattctgtctctacaaaacacaaaagaattagccaagcatggcagtgggcacctgcagttccagctactgaggaggctgaggcaggagaatcactggaa<br>cctaggagtttgaggttacagtgagctatgatggagtcatatgatggagccagcctagatgacagggtacgaccttttctctaaaacgaacaaacagaaa<br>atgtctctgtgtgttgtgtgttatagaaaaaagttacggaagtgtcctaaaatgttattatctgtgctcatttgtgagtgat<font color="green"><u>CAATTATACATATTTCTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>CAATTATACATATTTCTT</u></font>cactttaaagtattctgatattatttaatttttttgtgtgggcacatatttcatttatatgtgggaaaattatttct<br>aaaaataaataggcagatgtaacttgtaaataggttacaaaaaccacttctatgatcagtatgccaaaaatatgtttatataaaataatggttgctgagt<br>catcagaacagtccatattctagaaaatgttgaaaaaatcaagtaaatttattaattcatttgttcatttattcattcactcaagacacctttatttaaa<br>ttttaacaaaatattgaattatttaatattcactacatatgaatcactactaatcacaaggtctacaggaatggaggaagcaccatagctgtctttaaaa<br>tgacc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	26466374	26466375	1002024	0	-	1104685684735	NA	NA	SINE	Alu	AluYb9	ctatttgtggaagattgtattttagaacagtatgcaaagagtattctcttgcttgtgggttttgtcagtagatattaaaaaaggatgtcaacttttctgg<br>aattcaatggtttctaccgcacgatctgctagacttggagaaatttaacttctttattttagtaagttctgaagttttgaaatttttagtatagacaaca<br>atccaaataggaatctaaattattgatttttccaaacacagaaggatgggctaatgatgacagagaaccttttaaacctatgatttcttgcttattcatg<br>atattatactttctctttcttggttccatctttcacattaaatacccaattttaaattccattgtctaattgatttaatgat<font color="green"><u>TATAAGGAACATTTTCTT<br></u></font><font color="red">AAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>TATAAGGAACATTTTCTT</u></font>ttcagcctaaatttttcttcctaatttattcccattactcttggttaaatcttgaataactaggattgatgaggc<br>actgagagctaattaattgattgctaaagcactgtggtattatgcaactccacagtgaattctcttagttttaggaaaccttttaacagtaaactgcatt<br>ataaggctgtttttttcttatttctaggtgtttttcacaggccagttatgtttaagattttccccaaagatgccacatgcaggcataaactaataaaagg<br>ctcaatttttacttagacatgttcactttgtcttttgtttattgtatttgtggaaaaggctttcaaaagtaagtgaccctgagggaaccggttaaaactt<br>acggata	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	2316306	2316307	1002025	0	-	1104685690677	NA	NA	SINE	Alu	AluY	tcagattagaaaagaaggatatggctaacgtcacacctctagcgagggagatggaattgggacccaagggccttgactcctaatctagtgctctttccta<br>ataccacatggatgtatgaacataatagtagcaacatttgttgagtgcttacatatgctagggattatcttaagtgcttcatatgaattaatctgcctaa<br>ttttcacaacagccctgtgaggtggatgcttacttttattgttctcattttaaagctgagacaattgaagtacagagaagttaagtaacttgtcaaaggt<br>cacatggctagaaaaatatggagctagaatttgaaaccattccgtttgtgcttttctgtcattatcatcatcaccatctcatgcttt<font color="green"><u>CTTGAGGTTTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>CTTGAGGTTTCTT</u></font>aaaaattcctccctgggtttaacctcttttccattaaaataaataaataaataggccgggcgcagtggctc<br>acgcctgtaatcccagcactttgggaggccaaggcgggtggatcacaaggtcaggtgacagagaccatcctggctaacactgtgaaaccccgtctctact<br>aaaaatgcaaaaaattagccgggtgtggtggcgagcacctgtagtcccagctactcgggaggccgaggcaggagaatggcatgaacccaggaggcagagc<br>ttgcagtgagcagagattgtgccactgcgctccagcctgggtgacagagcgagactctgtctcaaaaataaataaataaataaataaaatattgaggttt<br>tctaaaaggctactta	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	122224468	122224469	1002026	0	+	1104685370289	NA	NA	SINE	Alu	AluYb8	atggagatggaggctatcatcctcagcaaactaatgcgggaacagaaaaccaaataccacatattcttacttataagtgcaagctaaataatgagaactt<br>atgaatgcaaagaaggaaacaacaaatactggggtctaatggaaggtagaggataggagaaaggagaggaacagaaaagataactattgggtactgggat<br>taatacctggatgacaaaattatctgtataacaaacccccatgacatgaatttacctatgcaacaaaccttcacatgtactcccaaacctaaatttaaaa<br>cattaaaaaaattaagtgtatactagagaaatctataaactgctaaagattaaactcaattataaaatttccggaaaggttttcacttgt<font color="green"><u>AAAAAAAATT<br></u></font><font color="red">TGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAAAATT</u></font>atttatgacacttgttaaaggtggtaaggcagattttattcaaagggtgtaatggccatagatgtaggaacttctacaaaagt<br>gtcttgcaatgggagagacagattgggctcatttctgactccaacaagaacaagtggagattggtaaccaagttgcagggtggaggtcaatggtaagaaa<br>atttctaaaatgaaacatcaagtgcaagtggtttgtggctaaacttacttgatgcgattattgcaacatcaggtttctgttacactccataaagaatgtt<br>ctaaaccaaaccccactcccaagctagattacatgattccatgaaactgtttttccccttctatctagtattcaattaaatatcttttataatttatttt<br>tcaatgt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	117116197	117116198	1002027	0	+	1104685369132	NA	NA	SINE	Alu	AluYg6	tatactaattgctggtaagaatgtgaaacaataggttctctcattctgtgccgttgggaatgcaaaatggtacacccactttggaagacaggcaatttcc<br>tacaaagctgaatatagttttaccatacaatttagcaattacaatcttaggtatttacccaactgatttgaaagacttatattcacacaaaaacttacac<br>ataaatgtttagagcaactttatttataatctccaaaaaccgggtaaccaagatgttctgactaggtgaatgaataaacaaatatcctgacagtgaaata<br>ttattccatgacaaaaaaaaggaatatgctgtcaagccaccgaaaactatggatacattctgtattagctgttctcatgctactaa<font color="green"><u>AAAGACATAACCAA<br></u></font><font color="red">ATTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCC<br>GGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACATGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGC<br>GCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGACATAACCAA</u></font>gcctgggtaatttataaaggaaa<br>gaggtttaattgactcatagcttcacatggctgagaaggtcttacaatcatggcagaaggcaaaggaggagcaaagtcacatattacatggcagcaggca<br>ggcgagagagattatgcaggggaacctctatttataaaaccatcagatctcatgagacatactcactaccatgacacagtatggggaaaactgcccccat<br>gattcaattatctccacttggccccacccttgacatgtggggttattacagttcaaggtgggatttgggtggggacacagccaaaccatattacatttta<br>aatgcatattgagaagtaaaaaaaaccagtctgaaaagggtacatactgtataagcccatagg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	129777217	129777218	1002028	0	+	1104685372199	NA	NA	SINE	Alu	AluYa5	caccatctcagtaaggaaataaggggtaccttattgctgccagccagaggtaaaagtcaagctttccacatggtctacaggtaaagggtggccttgttat<br>tgtcttgcttgaataaaagtccaatttctctacttgactttcttgacaccaccccagcaggggtattgaggcattttgttacatctttatgaggctcacc<br>cctcagcctttgctaagtctaggctcaccactcagcctttgcttgcatgacttggaataaggctaggtcatctgcagtattgtgcttgagtagggttgtt<br>attgtctaaaagttttctgtctcactaactggcccctttcctcatccttggctagagagatcaggcttttattgaagctctt<font color="green"><u>AAAAAAAAAATCTGTGCC<br></u></font><font color="red">CGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGA<br>AACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAA<br>CCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAAAAAAATCTGTGCC</u></font>cattggtatttctagtttgatggcttctctagtcctaagtgtggtatatattaggcaaaaacaaaacctag<br>ctaacttaccaccttgtcattcctcaggatctgaggtttctagctggtctgctcagagtcttcttatgcttgctttatgtacaatatccagagttttaat<br>tttacttagcacaagtaatagagaaaaagtatttccattcaattttcctgaaaatgaaagtccactgacactgtagatttctaagagcctgaagagttaa<br>tagaacatacaagtttttttagttagcaaaatattggagataaccttctgcttcatatgtacagatgttccctaggccacacacaaatttgaaaaacaat<br>ctaatcttcag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	128019997	128019998	1002029	0	+	1104685437769	NA	NA	SINE	Alu	AluY	aattgccttagccaggttcttcctgggacttttattgtctccccagatactgaatattcaactcctctctcccgactggagctcggggtgcagtgtgctg<br>tgtgcagccccagcctcctccagggaaggggagaaggctgagcagggaaggaggcctcaatttgaggtgtatgggtaatgaggctgagggtcagggctct<br>ggacttgcaaccccagctgcttcctccctggctcacccctggttcagggatgacacccagcttccttctttggtgcaaactctagtactgcaagagtctg<br>ttaaacctgggtgttcgcctgcatccatgcaaccagcaccaccaaaaaggccaccacctcctttgccctattgacagccttgct<font color="green"><u>AAGAATCTCTCACCTT<br></u></font><font color="red">TGCGGTGGCGGGCTCCTGTAGTCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCC<br>ACTGCACTCCAGCCTGGGCGACAGAGCCAGACGCTGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATCTCTCACCTT</u></font>aacccgtgcatttttacaaac<br>tgctgcagccagatcagtttaggctgtgaccgtggcgggcagttctggtctctgtgggggcatcccgggtagacaccctcccatctcatgcagcctcctc<br>tatttggtgcagtgtggcccagccctggccatgccccgtgggagtgcaagaggaagcaaggaagcaggaagcattgttctagatgtcttcaatgaagacg<br>caggaaacaaagttagattgcagtgagtgaagggtgcagtggagagccagactcactgtcaagggagtagatctctaagcctagccttgctttttggtgc<br>tttctgtgcacctcttgtctgaaaaggtgtcactttgggggaaatgagctcaggggcagcacc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	117549574	117549575	1002030	0	-	1104685429625	NA	NA	SINE	Alu	AluY	ctgaggtcataaatcaaattagtaatatgaccaggattagaactcaatctgttctccccaaaggttgaattttttccaatccataaatgggcacatgaaa<br>agaacaaaccagatcactgaacttacccttctcagatgcataagtctgaattatcttctagtatatagatatggaaatccttgggaaatctgagccagtt<br>ttgatttcttttttgagatccatctctgaggattgaaaaattaaatgttttaggcattggaaatctcagtgctatagatggaattgtgtgccctccccag<br>cccttcccaccctatcaaatgttgaagccctaactttcagtgtgactgtatctggggatagggtctttaggaggtaat<font color="green"><u>CCCTATGGCCTCATTTAACCTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCAGAGATCGCGCCACTGCACTCCAGCCTGGGCGAAAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>CCCTATGGCCTCATTTAACCTT</u></font>tgaaaccctaatccaacaagaaagtagcctctgagaagagaaacagatctttctccctctgc<br>tatgggaagacatagtcagaaggtgttcatctgcaagccaggaagagagttcttgcctaaacatgaccatgctggcactctgatcttagacttccagcct<br>ccagaactgtaagaaagtaaattttcaatggtttaaatctcccagtctatagtactttttatgacagcccaagctgacaaatacatccatttgcaatgag<br>ggtacattttaaatctttaacaaatacaatctgtagttggcttcttagaacttggggaacaggacattagtttgtaaagttattgtttttccattaagtg<br>ctctacaattcaactg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	122095003	122095004	1002031	0	-	1104685100250	NA	NA	SINE	Alu	AluY	atatttttgccatagtttacttatttcacttgagaattagttaattcaacaaacatttattgagcatctgctatgagcagtgtccttttgactcagtctt<br>acagatttctgccagagaattttacctctattctgtgatactacttccccaggggcaaacaggtgccagactcccccaggggcaaacaggaaacaggtat<br>caggtgctcgacaggggatgatttaagagtctggcaatgtagctgtaagaatgtggatctttgattcagaaacaagggaaacaagaactccagattctcc<br>aagtttatgaacaaaagataaactaatcatgagcaaatagcaaaactaagtaagcataatacaaaattaataagacataccttttagaa<font color="green"><u>TCCTTTACTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>TCCTTTACTTT</u></font>attaataataaactactatttactactgagaattcaaccctcctaaaccctgtttggtgattgcataatgttagtttatatt<br>attgcttaagagggggctgaggttgctaaaatgagattctcttcagtttatgctaccttcattcctactgatgttttttgagactctcttggcttaaaat<br>agagggatagttcttaaataaaaaatggtctgtctcttctagggataaatttttctttgcttcaattcctctttactttcagagccatgttaatactact<br>ttaaactgacttactgctctttttttttgaaacagggtgcgactctgtcacccaagctggagtgcagtagtaccattatggttcactaaaacctttgcct<br>cctgggc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	78772992	78772993	1002032	0	+	1104685332218	NA	NA	SINE	Alu	AluYa5	aattgtaccaggaatgtgtacatctgtgcatattgtgggagggagagtccacagcttttataagattattagagtaattctctgccagtcatcagggtga<br>tcacacatcttttgcttttctctcttcctggcccataagcagatggcactgtcccacctctagaagcaaatacatccatgtgacttggggcactgaaatg<br>tgagagtgactttgggcacttttggacagaaaccttaagagacaaagcttaccacatttcatttccctctggtatcatggttggcaatggtcaaaatggc<br>agcaactccattagctcaggcccctgagggtctgcaaatcggccggtccctcctgccaatccaaaatggacatgtagtgtgag<font color="green"><u>AAAAAAAAAAGCTTTGA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAAAAAAAGCTTTGA</u></font>tgttttattccaaggagatcatacggctatttgttcctacagcacaccctcatttgtcatcgccgatacacatctttaac<br>ccctcaaaagttaaagatcactttaaccctaatgaatgaagtcctaacagaagacgaattccaggaagaatttcttcttctcttcataccgatgagagcc<br>atatactatattgaattctgccttagtattccaattacctctgagtaacatttctccctatggtagcatatgacacattgctcttttttccttcgtaagt<br>cacacacaatcactcatgaaggaaaaaattgtgcacgtaagtgccagaagctcctaggagaaggaagcatgatcatgaacagcttacagaggggaagaat<br>tcc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	94322168	94322169	1002033	0	-	1104685126714	NA	NA	SINE	Alu	AluYa5	ttttaattatagctgttcttgtatgaagtggtatctcattgtgcttttgatttgcatttccctaacaactaatgatgttaaacatctttttatgtgcatg<br>ttgtctatctgcatatcttccttggagaaatatctattcaacccctatgcctatttctttctttttttaagagatggggtcttgctctgctgtccaggct<br>ggaatacggtggtacaatcatagctcactgcagtcttgaactcctgggcttcagtgatcctctgcctcagcctcccaagtagctgggactacaagaatgc<br>accaccacacctggctaactttttaactttttctgtagagacagcatcccattatgttgtccaagccgttctcaaattcctggcctc<font color="green"><u>AAGAAATCTTCCC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGGGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAAATCTTCCC</u></font>ccctggcctcccaaagtgctggaattacaagcgagagccactgtattgggcaagttttgcccatttttttattgc<br>attgcctttctgtagttgagttgtaagagttctttatgaatattctggatatcaggaccttatcagatatatgatttcacatattctctcccattgtgta<br>caccatcctttcactttcttaacaatgtcctttgatgcaacaaatttttaattttgataaagtctaatttatcttttactttaggtgtcacatctaagaa<br>tccactgccaaatatgaggtcataaagattttcccctatggatttttctaagagtgttgtagtcttagctcttatatttacagcaaaggtctaaatataa<br>gatatattaggt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ECM2:NM:001393:2/10	
0	chr9	102402461	102402462	1002034	0	+	1104685433398	GGCAGAACCTGAGCTCCTACT	CCAATTGTAAACTCTCCACCTTC	SINE	Alu	AluYa5	aagcaggcaacactttcatggaacaaaagagcttactcaactcttagaaaccacgactacccctacattcagatttgtcgaaatcctggttccaccaacc<br>agcagaactcaattctaagcgattctttctcagcacacttcctatgtgtgccattatattgagagagctgaattcagaggagtatcaggagagggaaact<br>gttcttttcccactgaccatctcaggcatattcttacaacttctttcgtcactctcagataataaaaattcttctagttacttttagacccaaagtaatc<br>ttatttgagttatgaaaattccagtccaatatcaaaatcatataacaactttctctatccaattgtaaactctccaccttcagtgaagtctt<font color="green"><u>TTTTTTTT<br></u></font><font color="red">CCATGCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGCAGATCGAGACCATCCCGGCT<br>AAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>TTTTTTTT</u></font>aaacccatgccaaagggtttatttaaaaagcaatcgtcagtagtcatttgccctacttctgtctccagccacgg<br>ttccactgcctagaggaagccattctaaacgcttatttttgtgtttagtaaattatagttgttgataaatttacgttaaccctggcttctcagtaggagc<br>tcaggttctgccacttggcgatttaatgtttgggagacgtgagagatgactcagagacatgctgtgacatttcatctcctcacctggactcccctccacc<br>cattttcttgagatagcaggtagctcgaaggcctgtatgaagccccaaaaggccaggattgctggctgtcagccaaaaggccttatcacaagccatgctc<br>gctgttgtctagtaattt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	554	229	NA	intergenic
0	chr9	103263712	103263713	1002035	0	-	1104685433195	NA	NA	SINE	Alu	AluYa5	cagacaagagtccctgaccccatagagcttacattctagcaagaaaacaaatgtttaaaaagtatacagataaaacacaatatgggtgtttcatattgtg<br>gctcatataggcatggtggctcatgcctataatcccagcactttggaaggccgaggcaggtgaatcacctaaggtcaggagttcgagaccagcctgtcca<br>acatggtgaaaccccgtctctactaaaagtacaaaaattagccaggcatggtggtgcgcacctgtaatcccagctgcttaggaggctgaggcacgagaat<br>cacttgaacccaggaggtggaggttgcagtgagccgagatcgtgccattgctctccagcctgggcgacagagtgagactccatctcaaacaaaac<font color="green"><u>NNNNN<br></u></font><font color="red">CAAAAAACACAATAGCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCAGGTCAGGAGATCGAGACC<br>ATCCCGGCTAAAATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGACGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGA<br>GGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAA<br>AAAAAAAAAAAAAAAAAAACAAAAAAAAACAA</font><font color="green"><u>NNNNN</u></font>acacaatagcatttcagattgtgataagtgctataaagaaaagcaaagctgcttaaggatgta<br>gaagttgtgtgggttatttctgataaggtgttataaagacttctctgaaatgacatttaggtagggatatgaatgatatgaatgagtgaactatgtaaaa<br>atctggagtgtagcattccaggcagaaagcacagcgagtagcataagttcctgaggaggacatagcttggcctgtttaaggagcaataaggtcagtatgg<br>ctggggtacaaagagaaagagggagtggtcagagatgaagtgggagaaggaagctcttttaggtcacagttaggagctggcattttattctcagtgtgat<br>gggaagctactggagaggtgataagtttctga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	45203828	45203829	1002036	0	-	1104685518718	NA	NA	SINE	Alu	AluYa5	aaagcagaattctaccaggtgttcaaagaaaagctagtaccaatactcctgaaaatattccaaaaaatgaaggaggaattcctccctaactcattctata<br>aaaccagtatcatcctcataccaaaatctgtcaaagacataatgaaaaaagaaaatgataggccaatattcctgacgaacatagacacaaaaatccttga<br>taaaatactagcaatcaaaatccagcagcacattctaaaagttaattcaccacagtcaagtaggcttcattcctggtgatgcaaggatggttcaacatat<br>gaaatcaataaacatgattcaccatataaactgaatttaaaaaaataacatatgatcttctcaatagatgcagaaaaagcttttgat<font color="green"><u>AAAATCCAACATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAATCCAACATT</u></font>cttcatgataaaaaccctcaacaaactagccatcaaaggaacatacctcaaaacaataagagccatctatgacaaaccc<br>acagccaacatcatactgaaaggacaaaaccttgaaatatcttcactaagaactgaaacaagacaaggatgtccagtctcaccaccgctattcaacatag<br>tactgaaattcctagccagagcaataaggcaagagaaagaaataaaagacattcaaataggaaaagagaaagtcaatttaccctttttgctgatgaaatg<br>attctatacttagaaaaccctacagactccatcgaaagggtcctggcactgataaatgacttcagtaaggtttcagggtacaaaatcaatgtacaaaaac<br>cagcagca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	34152375	34152376	1002037	0	+	1104685752389	NA	NA	SINE	Alu	AluY	atatctttggcactagcttccagtggattccctggagctaactgtgtaaacaactgctgtctctgaccttttgttgcaagcatttacaaaagtagtacat<br>tttaaacatatgttgaatataaggctttatgttctgcaatgggtatgtagcagtaaatgaggcagatataatctgggagtcaaatgttattaaactctag<br>cagctctgcaaggtactttataacatgagagacacacccagccacccacccctattccccaaacacagaaatatagttggtaaaaaaaatgcaaaacagc<br>aaagtgtcagttcaattggtgagcataaattcattaccacaggcaagtaatttcatggctatttgaaacacaagaaataactctagaag<font color="green"><u>AAAGAAATATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAGAAATATG</u></font>agtgatggagagttgtacctagagaagctctcagcctggaataatacattttacacaacccacagaaaaatgcaaatagaaag<br>atgttgttggatatgctcaagcggaatggtgaaataaaaccgggcagaaaaaaaagacaatcttagtcacttaatactaagtgttttgccagtacactgg<br>tgaaatatacaaatagttaacaacagaagtgctgaacttcatatgaccattaagattattctttgatatttatacataatttttcaagcctaataccttt<br>aattctatagaaaatcccctttcctccccagatttatgcaaacagcatagaatctttattctcatggtaaattcttgttcctcctactttccaccaacaa<br>acttta	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	145705457	145705458	1002038	0	-	1104685543789	NA	NA	SINE	Alu	AluYb8	aattagagacctaatttcttacctaaagaatatagaaaggaagagaaaaataaacccaaagcaaacagaaggaagtaaatcataacgataaaaacaaaaa<br>tcaatgaaattaaaagcaggaataaaataggaaaatcaattaaacagaaagctatttctttaaaaccgtcaacaaaattgataaaacttaagcacaactg<br>acagcttaaaaaaaagaagacaacaaataaacaatatcagggacgaaaaaggacatagcattacagatttttcaggcattaaatggataagagaatactg<br>tgaacaaccgtatgctcataaattcaaaaatatagaaaaaattgatcaattcgttagaaaaacacaaactaccaaaaataaattt<font color="green"><u>AATAAAATTATATAG<br></u></font><font color="red">TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTA<br>CTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGA<br>GCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AATAAAATTATATAG</u></font>tgatataattagtcctgcaactaacaaaaagaatgaatttgtaatttaataagtctcttgtctgtcacc<br>atgtgagatgtgcctttcaacttgcgccataattgtgaggcacccagccatgtggaactgtaagcttattaaaccgctttattttctaaatttctcagtc<br>ttgggggtgtcttcatgagcagcatgaaaatggaccaatacagtaaattggtaccaaaaacaccctgatttttcagttccaacctttagagctgtgataa<br>ataaatgtctattgtttaagctacccagtctataggattcttttatagcagcctgaaatgactaaaacaattatatatgtctattacctagaaattctgt<br>tcctgaacatacacct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	149201983	149201984	1002039	0	+	1104685361673	NA	NA	SINE	Alu	AluYa5	ccataaggtagagagaagaaggaagactgtctagagaacttgatacttgaggaatgacatggcagagagttttctgagttttcttatttcctttcatata<br>tcccatacatgacactacagatactttcaaaatggaatagtcaacaggcacaaatttttataaggcaagcaagaaaacaaacacaatacaaaaaaaaatt<br>ttctttctctatccaaaggattaggaagaaaatgacctagcaaaacagaaactttttttatatgatccacccttctctaactaaacaacaaaggaaaaac<br>ttccttccccccatcctacaatgtcagcaaggtcaggtggggagctgaatttttgtccccatcatgatagcaagaaggtggaaca<font color="green"><u>GATAGCGAGAGGTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GATAGCGAGAGGTTG</u></font>tgctagttgccactccactgatcctgataagatagtgtcagcagagcct<br>agccacccccacctgttggcagcaagccaatgcaaggtggtgcaatttagcaatctgcctttgcaggggtggtaatagcagggtattagtggggagcaga<br>acatctaccactacctgaacctgcatactatacctcaacagggtgaactgcctacataaacgcagattaaataggatacaaaatctcaacatgatacccc<br>aaatgtccaggatatgttcaaaaatcacttgtcatgcttagaaccaggaaaatcacaacttgaatgagaaaagacaataattgtcaacacctagatgaca<br>gaggtgttagaattatctgatgaggattttatagca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	126118374	126118375	1002040	0	-	1104685473402	NA	NA	SINE	Alu	AluY	tcctggagcagcttgcattcagcttccagaggcagaatgggaaatatggatgctccactcccgatgaatgagatctatgttctgattgctgattgctgct<br>tctgattgcagaggtgcagacacagagatgagcagccattattgtaaccctcaccaactttgttgccacttcttcctctctggctgaagtaattctcctc<br>cctccctgaattcattctcgctttttttcctgtaagtaaccagacatttaagaactgagacattcaaaagcacccacatgtgtgaaaaatttagaaagtc<br>accacacatgcccaagcaaaggcacaagatcactaaatacctgaaaaggcctgaagtttacacctcagaattatatagcctac<font color="green"><u>AAGAATTGTAAAAATAA<br></u></font><font color="red">GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCG<br>TGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCAC<br>TGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTGTAAAAATAA</u></font>taaataaataaataaaacct<br>gaggaagagggaaaacctgaattccaaagttcccacactataagatacaaatggtcctcttttacaaaaaatcacaaagcatacagagaaacagaaaaat<br>gtggcccattcaaagaagaaaaattaaaagtccagaaactattgtggacaaaaacctgatacagacttactaaataagcacttttaatacctgtattgaa<br>aataatcaatgaactaaagatgacatagagaaagtaaattaaataatgtattaacagaatagaaataccaacaaagagagaaaacagtaaaagaaacaaa<br>aaaattatggaattaaaaagtacaaaaactggaataaaaatttcactagcaggactaataaac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	136177506	136177507	1002041	0	+	1104685691986	NA	NA	SINE	Alu	AluYa5	aggatgagctgagaatttgcatttctgacaagctcccagctgatgctgatgctgctggtccagagaacacacttcaacaaccactggacttgccaagtag<br>cactgacactggaaattataaatattgacagtgatggtagggcaaggtatgaaaggtatgaagatggtcaagaaagtttgcaattgtggagaatgtgaga<br>gaattgactagagaaacaatataaatagtgtcagtgtaacaaaagttaaagttttgactgaggcatcaagataccatagatattgaagcaattagtgaga<br>caggccaccctgtatgaatttcaaagtagcgaaccaataactgatttcaaaactcttaagcccttcactcagtatgggttt<font color="green"><u>AAAAGCTCTGGTTGGTGGA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAGAAAATAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGCTCTGGTTGGTGGA</u></font>tattaggggtacttgtaaggaatatttctagtaagagggctgttctgtgagccctccttcc<br>caagatggaagggtacagagtgcttctccctctacatcaagtcaggagagaggaattttaaggaccacttagcttgatatgtgacttctgcagttggaca<br>gatatggtcacatggtgtctgactctcacctggaaaatgtaaaaggctggccagtgctccaagagcaggagcaaaaatgttggtgctgtgttgagatatg<br>cctgctctcccagaatctgtcagagcaagggacatgtacgtgtaccccagggatcagacaaaagccacacatgcatgagagatcttcaggttaatggctt<br>tctgcactgtggaggtttca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	116722893	116722894	1002042	0	+	1104685359195	NA	NA	SINE	Alu	AluY	acacacacacacacacacatacactggattctcaactttttcaagaaatggctatcagtacagaggtcaaatattagcaatgtttctgtctgaaggattt<br>ttgaaaaattactatccttttctctaaacatttctatattttctaatctcctcaaaatctccacaaatttctatattttctagtcccctcttaaaaatag<br>aaaaaatatatttaccatgcctagtaactaatcaaaatctcggtgatataggccatttttctgcaacttaagataactgcataaatttcaaattcttttc<br>caagaaaacattcagttttagaacatgtcaggtttaatagtctttgcatttccaaccaatatttctataattaacatggaatgctt<font color="green"><u>TTGATTTATTATTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGAAAAAAAAAT<br>AATAATAATAATAATAAT</font><font color="green"><u>TTGATTTATTATTA</u></font>aacaaaaaaggaaaaggaaaaaaagaaaattgtcttgggaattgttactaatatgttaacagaatgca<br>gacatgaatttaaaactgaactaatctatgtagccatttcaacatgacataaattagaggaggatattattcatatctctattcccatcaaagataaggt<br>agggtaaagatgagaaaaacgtgtgagtataagtcatgttcaaaaagtaggagaaactgatggtgaacatttgtttccttatgctacatgctgcaacaag<br>ttagcatcatgagtttccttgcaaataaatattggttttgaaagtatgtatacattttattgaaacatactgtatatttgagtgtgctgaaaagcctgtt<br>tgtaaggctattaaatta	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	119411885	119411886	1002043	0	-	1104685492350	NA	NA	SINE	Alu	AluYa5	tctatctatctatctatctatatatatatatatatatatatatatatatatactgtgtattcattcatttgccaatgaacacttagattgtttttctatc<br>ttggctactttgaataatgctgcaatgaatatgaaagtgcagacatgtctttgagatagtgattttatttcttttggatatatacccagaagtgggttgc<br>tagaccctgtggtagttctatttttaattttttgaggaatctctgtactgtttttcataacgtttgtaccaatttacactccctcccaccagtgtacagc<br>agtgaaagcgtttccttttctccacatctttaccaacatttgttattttttgacttttttaatagaaaaaaaatctaaaatgctta<font color="green"><u>TCTGTTGTGGTTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>TCTGT<br>TGTGGTTTT</u></font>atccacataactaaaacaattttgagcagtaagaacaaagctgcaggcatcatatatcctgatttcaaactatagtaccaaactatagtaa<br>tcaaaatatggtactggcataaaagcagacacacagaccaatggaacagaagagagagcccagaaataaacccacacatgtatggtcatctaatcaacaa<br>ggtgccaaaaatatataatggagaaacaatagtctctttaataaatggtgttgggaaaactggatatgcatattcaaaaaaataaaattggattcttatt<br>ttacaccattcacaaaaatcagttcaaaatggatcaaagacataaacataagaccttattgtggttttgattggcatttctctaaaaagtaatga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	122500059	122500060	1002044	0	-	1104685357089	NA	NA	SINE	Alu	AluYb8	tccaagcccagttctgccccagcatcagggaagccaccacagacccgggtctccccttgtggatccatgctccaagcctgccccagtggactccggtgcc<br>atgctggccccatagacccaggcaccagttttatccaggcctgactgtttgcaggcagacccttgcagcaggcccgtctacagtgcccacctgtgtattc<br>aaacagaatttctggccaggatgactgatggagggctttccctgccaaagacagtctgtaaggactggaaaaggtgcttacttcttcaaatacatcgaca<br>ccaatataagccaacaaggatcacaagagatccaataattatgacaccaccaaaggaacaaaataaagcaccagggaccaactct<font color="green"><u>AAAGAAATGGAGATC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAATGGAGATC</u></font>acaagtgacctcacaaagaattcaaaataattgtttttaagaagctcagtgagctacaagaa<br>agcgcagataaacaactgaatcaatcaagaaaataatacatgaacaaatgagaaggtcaacaaagaaaaaatataaaaaaagaaccaaattctggagctg<br>aagaacacaatgactgaactgaaaaattaaatagagagctccaacagcagacttgatcaagcaaaataaagaatctgtgaacttggagacagatcacttt<br>aaattatctagtcagagaaacaaaacaaaaaagaaatgaaaaaaggaaagcctacaggaccatgggacactatcaaaagaacaaatatatgcattatggg<br>aattccaggaggagcagagaaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	149279525	149279695	1002045	0	+	1104685490556	NA	NA	SINE	Alu	NCAI	acaggtgtgagccaccatgcctggcccagtaaggttttaatcaaaggagtaacatgatcaaatttaatgactctgaaaagattggaaacaacctaaagat<br>ccagcagtaaggtattacgtttgttatggtgcatccatccagtggaatactaaatactaggcaacattttgtttttgagacagtcttgctctgttgccca<br>gtctggagtgcaatggcacaatcttgctcactgcagcctcaacctcctaggctcaagcaatcctcctgcctcagcctcccaagtatctgggactataggc<br>ccacgccaccaaacctggctaatttttatatatttttgtagagacagggtcttgctatgttgcccaggctggtcttgaactcctggcctcaagca<font color="green"><u>NNNNN<br></u></font><font color="red">CNNNNNNNNNNNNNNNNNNNNGCCCAGAGCTGTCACCAAAGCCAGTGTTTTAAATCAATATATTATACTACCCCTAACATAGGAGAAGGAGAGGAGATGG<br>TAGAGTAGACTGTAAGAAAAGGACTCCTGGCTGGGCATAGTGGCCCACACCTGCAATTCCAGAACTCTGGGAAGCTGAGGCTGGTGGATCACTTGAGTCC<br>AGGAGTTCGAGACCAGCCTGGGCAACATAGCGAGACTCTGTCCCTACAAAAAATACAAAAAAAATTAGCTAGCCATGGTGGTGTGCCTGTAGCCGCAGCT<br>ACTTGGGAGGCTGGGAGGATTGTTTGAACCCGGGAGGCAGCGGTTGCAGTGAGTTGAGATAGTGCCTTTGTACCGGTCCAGCGTGGGC</font><font color="green"><u>NNNNN</u></font>gcttgag<br>caacatggagaaagcccatctctactaaaaatacaaaattagctgggtatggtggcacacacctgtaatcccagctacttgggaggctgaggcaggagaa<br>tcgcttgaaccggtgaggtggaggttgcggtgagccgagattgcgtcactgcactccagcctgggcgacaagagcaaaactccatctcaaaaaaaaaaaa<br>aaaaaagaagaagcagctctttctattgctatggaaagatcatgcagaatggtgggtataatatattatcatttgaataaaaagctaaagaggctgggtg<br>cagtggctcattcctgtaatcccaacactttgggaggctgaggagggcagatcatctgagcccaggagttgggaccagcctgggcaac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:BNIPL:NM:138278:4/10	
0	chr1	208985123	208985124	1002046	0	-	1104685477986	CCCTGAGATGTAAATGTTAAACAAA	TTTTTCTTCATAGCACTTAAACAATTT	SINE	Alu	NCAI	aatacagttttggatgcgaaaataccagaatttctaggttaaaaaatggagcagaatagttgaatcctggctaccctagaaaaatccaggggatggaagg<br>cacccataaaccatttcctcagagaccttcccttgctctcatgctcccaatccaggttagtccccacattggcttttactcatggcatttttttttcttc<br>atagcacttaaacaatttattattattattattgagacagagtctcagtctgttacccaggctggagtgcagtggc<font color="green"><u>TCTACTAAAAATACAAAAATTAGC<br>CGGGCGTGGTGGTGCGTGCCTGTAGTCCCAGCTGTTCTGGAGGCTGGAGACACAAGAATCGCTTGAACGTGGGAGGCAGAAGTTGCAGCGAGTGGAGGTC<br></u></font><font color="red">G</font><font color="green"><u>TCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGTGCGTGCCTGTAGTCCCAGCTGTTCTGGAGGCTGGAGACACAAGAATCGCTTGAACGTGGGAG<br>GCAGAAGTTGCAGCGAGTGGAGGTC</u></font>atggggtttcgccatgttggccaggctggtctcgaattcctgacctcgggtgatccacccgccttggcctcccaa<br>agtgctgggattacaggagtgagccaccatgcctggccaacaatttataattttacatatgtaatctttgtttaacatttacatctcagggtagctttgc<br>cacctgctttatccccggtaactaacggcgcttgggtcttgtagggtgggtcccatggatctttggctcccagacactaggcatatttttcaatgtgtgg<br>t	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	499	377	NA	intron:KCNH1:NM:002238:10/11
0	chr1	189355342	189355343	1002047	0	-	1104685258281	NA	NA	SINE	Alu	NCAI	acgactttaggtatatgatagtacttgaacctcaaaggaataagacagttattgtgaaggcattctaagtgaaacaaatcggataagaaaagaaaattca<br>gtgacagtttgacttcctctataccgacttggatgtcctttctttctttctcttacctgattgctctggctgcaacctctgcctcctggactcaagtgat<br>tctcctgcctcagcctcccatgtagctgggattacaggcatgtgccactgcgcccgattaattttggtatttttagtagagacgaagtttcaccatgtta<br>accgggttggtcttgaactcctgacctcaggtgatctgcctgcctcagcctcccatgtagctgggattacaggcatgtgccactgcacccgacta<font color="green"><u>NNNNN<br></u></font><font color="red">AGTATTTTTAGTAGAGACGAAGTTTCACCATGTTAACCGGGTTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCTGCCTCAGCCTCCCATGTAGCTGGG<br>ATTACAGGCATGTGCCACTGCACCCAATTAATTTTG</font><font color="green"><u>NNNNN</u></font>tttagtagagacgaagtttcaccatgttaaccgggttggtcttgaactcctgacctcag<br>gtgatctgcctgccttggcctcccaaagtgctgaagctacaggcatgagccactgtacctggcccctaaatattttttgaaatgatattgttttactatc<br>aaaacctgttcttgattttattcccatccacattctcagggaattttgccgtaacttatatttcttcaaacttcacctcataatatttcctctctactga<br>ttatattttaccagcacttaaaattctcatgtcttgatcactttaaaatactctcctttgtgttctgtcacttttaacttctttttccatttttttcatt<br>caataacaaatttccaggaataaattgttcacaact	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	244882806	244882807	1002048	0	+	1104685304636	CCTGTGTTACTGCTTGGGTCT	GAGTTGCTCTCTCCTAGATTAAAAGC	SINE	Alu	NCAI	ttcagaggtccccttgtgagcagattttagcaacatgatatgctgtgtggagataaaccattcatttttcttcattaacatctacatttataatctgctt<br>gcagaaatgtcatatgttcagaaaaatatattaagtgtttcagattgaagtgatttttgtttttagaaataatttcattatttctaaaatctgaggaaga<br>agccctgtgttactgcttggnnnnnnnnnnnn<font color="green"><u>CGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATC<br>CTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAACTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGC<br></u></font><font color="red">CGCCTGTAATCCCAGCACTTTGGGAGGCTGAGG</font><font color="green"><u>CGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAT<br>CCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAACTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGG<br>C</u></font>gcagtgagccgagattgcaccactgcactccagcctgggctacagagtgagactctgtctcaaaaaaaaaaaaaaagaaagcttttaatctaggagaga<br>gcaactcatgttccttgccctctgtctagattagcaacatttacttaaatgttttcagaactgcttgtatcacatgaagcaaaatacaggggaggacata<br>agttcacagtgtctagtggggagaaaaatgaca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	498	364	NA	intron:C1orf71:NM:152609:9/11
0	chr10	31041286	31041287	1002049	0	+	1104685337396	NA	NA	SINE	Alu	NCAI	taagtttgtagtttttcgtataccatccgcatgaaatttctggtcttttatgtaaagtgaaaataccagtaattaatatcttatcacatttttatgtttt<br>cattgatacaattagtttaatatcactgagtatgtgcaattgattatcttcctgaaaaactctttagcaataaataacatatgaaaccttccacccaatg<br>ttatagtgaatgtggatgtataagatgctgtcgtttgctgtcagtcatattggagttaatcccatggtaggaaggcagacagatgactctacaggtgaat<br>tca<font color="green"><u>GAGTCTATACTTCTTGAACCTAACAAAACGCTGTGTATTCCTGGAAGGGAGAGAGAGGCTCTATCTGCAGCTTCTGGGTGGAGCATTTTCTTCCTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAAGCAGGAAAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTG</font><font color="green"><u>GAGTCTATACTTCTTGAACCTAACAAAACGCTGTGTATTCCT<br>GGAAGGGAGAGAGAGGCTCTATCTGCAGCTTCTGGGTGGAGCATTTTCTTCCTCC</u></font>aggttgattataggtcactattgtagtcacaggcatgaaactaac<br>atcttatataaacattatccatgtgttgttatgaactactcgtaacttgcattttaagcatgaagtcatgagttctggcaaagaagaaaagatttcaagg<br>gaaatcagcgaaagacagtgtctcccttgggtctactgacattgcattctgtgtaactacaggaaaaaactctcaagaagccagtccccaagtcttacct<br>tatccatgctggtctggagcccctaacattcaccaatatgtttcctagctgggagcac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	14524821	14524822	1002050	0	+	1104685342302	NA	NA	SINE	Alu	NCAI	gccactcaatgcactatggtaacttgttacaggaggaacagaagaccaatgcagcataactgtatgagtctgcaacaaaattttagcaaaccatgccaag<br>caatttacaaaaaatataatatatcatcaataagtgagatagtcccaagagttgaagattggtttaacatttttgaaaaaaaatctataattgaccatat<br>taacaagtttaaaaagaaaagccatttgatcatctcaaatagatacagaataagcatttgacaaaatttagcacctgttcacggaaagaaaaccacaaac<br>ctctgccaaataggaaaagaaggaaatttcttcaccttaataaaatatatctactaaaaatctacagcttacattataactcactataaaagaag<font color="green"><u>NNNNN<br></u></font><font color="red">GGCCGGGCGAGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGGAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTATA</font><font color="green"><u>NNNNN</u></font>atgtctatacttacc<br>acctctattcaatattgtacctagccagtgtaacaaaacaagaaaaaaaaaggaatagacttggagaaaaagaaagaaagctcttcttttcacaaatggc<br>atgatctaattctaaaaaaccatttttaaaaaggctactagaacaaataagggagtttatagcaaggccacaatatacaagatcaacatagaaaaattca<br>gtgtacttatatatagtcgcaataaaaaattgaaaattgggaagtgaattatactaaaatctgaaacattttgctgagaaaaaaatttaaaaaaacataa<br>ataagtggagagatgtatcatttcatggatggaaagacaatgtggttaaaatcctagcaggcatttttggtagaaatttt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	102553776	102553793	1002051	0	-	1104685399546	GCCCCCTCCAAAGTAAAATATC	AGGCCATATTGACATGGACAC	SINE	Alu	NCAI	ccaggaaatccgcagttttaccacttaaattttcaaaagtattcaaaatactttattcaaactaatgagttaatactgttcatacacaccaattttaacc<br>ccaaacaaaaatctgtcatcttgtttatttctgaggcagtataatatcaactcagcaaagattttatattcattcagtaaattaatctagttgtgaatta<br>caattcacccaacttactctaagtttctattatattaaaaatagttacagagtttaactgaaaatgatagcatgtcttggccccctccaaagtaaaatat<br>caaatgtacatcattttaacttaattatgactttatggtcatgtagaagtcttgacaaagacagcattatagacaaattatatcattatctaaga<font color="green"><u>NNNNN<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCTTAGATAAATGAGGAAAA<br>AACAGGGGGATTACTAGTAAGCAAG</font><font color="green"><u>NNNNN</u></font>acatagagactaccttgaggtcccgaaccacttgacgagcactatttgtcaaacaccatcagaccattct<br>cttgtgtccatgtcaatatggcctaataattgatatcgaggcatagctttgggattcatagtatattgtttcactactttgccagttttacaaagcgcag<br>cccttaacattctccaaagcgttgattttccagcaccacttggaccaacaataacaactcccatcctctggcataactgttcatacaattctaaagcctt<br>tttgatctagtaggaaagaaatatgttcatatatgatttataatattcaatcatacttagttctgcttttattctgtaacacttgttctaatgtgtaaat<br>taagcctttgatttcttcagtggaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	545	238	NA	intron:DYNC2H1:NM:001080463:38/90
0	chr11	105571431	105571432	1002052	0	-	1104685398679	TCTGAAAAGAACTAGAAAACAAACAG	AAAAGAACTTTCCCGGAGGA	SINE	Alu	NCAI	tgattacatcact<font color="green"><u>TTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCAACCTCAAGTGATCCACCTGTCTTGGCCTCCCAAA<br>ATGCTGAGATTACAGGCGTGAGCCACCACGACCAGCCCTAATTTTTATATTTTTAGTAGAGACGGTGTTTCACCATGTTGGCCAAGCTGGTCTCCAACTC<br>CTTACCTAAGGTGATCCACCTTCATTGGCCTCCCAAAATGCTGAGATTACAGGCGTGAGCCACCACGACCAGCCCTAATTTTTATATTTTTAGTAGAGAC<br>AGTGTTTCACCATGTTGGCCAAGCTGGTCTCCAACTCCTTACCTGAGGTGATCCACCCTCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCAC<br></u></font><font color="red">GTGGCTCACGCCTGTAATCTCAGCATTTTGGGAGGCCAATGAGGGTGGATCACCTTAGGTAAGGAGTTGGAGACCAGCTTGGCCAACATGGTGAAACACC<br>GTCTCTACTAAAAATATAAAAATTAGGGCTGGTCGTGGTGGCTCACGCCTGTAATCTCAGCATTTTGGGAGGCCAATGAAGGTGGATCACCTTAGGTAAG<br>GAGTTGGAGACCAGCTTGGCCAACATGGTGAAACACCGTCTCTACTAAA</font><font color="green"><u>TTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCC<br>CAACCTCAAGTGATCCACCTGTCTTGGCCTCCCAAAATGCTGAGATTACAGGCGTGAGCCACCACGACCAGCCCTAATTTTTATATTTTTAGTAGAGACG<br>GTGTTTCACCATGTTGGCCAAGCTGGTCTCCAACTCCTTACCTAAGGTGATCCACCTTCATTGGCCTCCCAAAATGCTGAGATTACAGGCGTGAGCCACC<br>ACGACCAGCCCTAATTTTTATATTTTTAGTAGAGACAGTGTTTCACCATGTTGGCCAAGCTGGTCTCCAACTCCTTACCTGAGGTGATCCACCCTCCTTG<br>GCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCAC</u></font>aggcagaggttgc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1021	884	NA	intergenic
0	chr11	128960571	128960791	1002053	0	-	1104685189147	CCTCCCTCATTAACCAGCACT	GCCTGGGATTTGATTTTCTGT	SINE	Alu	NCAI	aacatttattgagcatttgctatatgataggcatcattccaaatgctttacaatctcacaatacccatgagttagatactactattatcatgctcatctt<br>tttttatagatgtgacaact<font color="green"><u>GTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGAATCCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAA<br>ACCCTGTCTCTACTAAAAAAAAAAAACACAAAAAATAGCTGGGCATAGTGGCAGGTGCCTGTAATCCCAGTTACTCGGGAGGCTGAGGCAGGAGAATCGC<br>TTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGTGCCACTACCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGAATCATGAGGTCAGGA<br>GTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTTAAAAAAAAAAAACAAAAAATAGCTGGGCTTAGTGGCAGGTGCCTGTAATCCCAGC<br>TACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGTGCCACTGCCTGTAATCCCAGCACTTTGGGAG<br>GCCGAGGCGGGCGAATCATGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAAAAAACCCAAAAAATAGCTGGGC<br>ATAGTGGCAGGTGCCTGTAATCCCAGTTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGATCCTGGGACACAGAGGTTGCAGTGAGCCAAGATCATGCCA<br></u></font><font color="red">TAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGAATCATGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTTAAAAAA<br>AAAAACAAAAAATAGCTGGGCTTAGTGGCAGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTTG<br>CAGTGAGCCAAGATCGTGCCACTGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGAATCCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACA<br>TGGTGAAACCCTGTCTCTACTAAAAAAAAAAACCCAAAAAATAGCTGGGCATAGTGGCAGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAG<br>AATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGTGCCA</font><font color="green"><u>GTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGAATCCTGAGGTCAGGA<br>GTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAAAAAAAAACACAAAAAATAGCTGGGCATAGTGGCAGGTGCCTGTAATCCCAG<br>TTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGTGCCACTACCTGTAATCCCAGCACTTTGGGA<br>GGCTGAGGTGGGTGAATCATGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTTAAAAAAAAAAAACAAAAAATAGCTG<br>GGCTTAGTGGCAGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGTG<br>CCACTGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGAATCATGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCT<br>ACTAAAAAAAAACCCAAAAAATAGCTGGGCATAGTGGCAGGTGCCTGTAATCCCAGTTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGATCCTGGGACA<br>CAGAGGTTGCAGTGAGCCAAGATCATGCCA</u></font>aagaggtaaagtaacttgccataggtcacactgctcgtaagtgacagggccatgattgtgctcaggaagt<br>ctgaccccagagccaactctcttaactattgcatgattcagcctccctgt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1353	1124	NA	intergenic
0	chr12	3747727	3747869	1002054	0	+	1104685486627	NA	NA	SINE	Alu	NCAI	attttttacaatgtaattgatatgcagaaaggaaagaaaatggaatcgtacaaaatgctcagtaaaactcagagaaggtggggaaaggggaaaatttgaa<br>aaggaaacaaagaataagtacaaaaaaaaagaagatagttagaagtgtgatagacagtaatccaactatatcaaaaatcactttaaatgtgtgttctagg<br>ccgggaagcctaggaagccaggcttaagaataagaaacaaggccaagtgtggtggatcacacctataatcccagcactttgggaggccgaggcgggtgga<br>tcacccaaggtcgggagttcgagaccagcctcaccaacatggagaaacctcgtctctactaaaaatacaaaattagccgggtgtaatg<font color="green"><u>GCTGGGATTACA<br>GGCGTGCACCACTACGCTTGGCTAATTTTGTATTTTTAGTAGAGACGAGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTTGGGTGATCT<br>GCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGCGCCACTACGCCCAGCTAATTTTGTGTTTTTAGTGGAGACGAGGGTTCTCCATGTTGGTC<br>AGGCCGGTCTTGAACTCCCGACCTTGGGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGTGCCATTACACCCGGCTAATTTTGTA<br>TTTTTAGTAGAGACGAGGTTTCTCCATGTTGGTGAGGCTGGTCTCGAACTCCCGACCTTGGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTA<br></u></font><font color="red">AATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACCCAAGGTCGGGAGTTCAAGACCGGCCTGACCAACATGGAGAAACCTCGTCTCTACTAAAAAT<br>ACAAAATTAGCCGGGCATAGTGGTGCATGCCTGTAATTCCAGCACTTTGGGAAGCCGAGGCAGGCGGATCACCCAAGGTCGGGAGTTCGAGACCAGCCTC<br>ACCAACATGGAGAACCCTCGTCTCCACTAAAAACACAAAATTAGCTGGGCGTAGTGGCGCACGCCTGTAATCCCAGC</font><font color="green"><u>GCTGGGATTACAGGCGTGCACCA<br>CTACGCTTGGCTAATTTTGTATTTTTAGTAGAGACGAGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTTGGGTGATCTGCCCACCTCGG<br>CCTCCCAAAGTGCTGGGATTACAGGTGTGCGCCACTACGCCCAGCTAATTTTGTGTTTTTAGTGGAGACGAGGGTTCTCCATGTTGGTCAGGCCGGTCTT<br>GAACTCCCGACCTTGGGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGTGCCATTACACCCGGCTAATTTTGTATTTTTAGTAGA<br>GACGAGGTTTCTCCATGTTGGTGAGGCTGGTCTCGAACTCCCGACCTTGGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTA</u></font>cgaggtgggca<br>gatcacccaaggtcgggagttcgagaccagcctgaccaacatggagaaacctcgtctctactaaaaatacaaaattagccaggcgtagtggtgcacgcct<br>gtaatcccagctactcgggaggctgaggcaggagaatcacttgagcctgggaggcggaggttgcgatgagccaaggtcgcaccattgcactccagcctgg<br>gcaacaagagcaaaactccgtctcagaaaaaaaaaaaaaaagtgtggtctaagtaaacaaaagacagagattgtcacaatggatttaaaaaacaagactg<br>aactaaatgctgtttataagaaactcactttaaataaaaagacacagatagaataaattaaaggggtggaggaaaag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	49858623	49858624	1002055	0	+	1104685303114	CTAAGGAGAGGCAGGGGAATA	TCCTCTTGTTATCCAGGCAGA	SINE	Alu	NCAI	actttacataagtcctttcaaaagaaatgaaataaatacaattatagtgatggccacatctaaggagaggcaggggaataggtgagggaaggaactagaa<br>aatagcttcagcgtggccaggcaccgtggctcacacctgtaatcccagcactttgggaggctgaggtgggcggatcacatgaggtcaggagtttcacacc<br>agcctgaccaacatggagaaacccagtctctactaaaaatacaaaac<font color="green"><u>AGTGGTGGTGCGTGCCTATAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA<br>TCTCTTGAACCCAGCAGGCAGAGGTCACAGTGAGCCAAGATCAGGCCACTGCACTCCAGCCTGGAAGACAGAGTGAGACTCCGTCTCAAAAAAAAGAAAA<br></u></font><font color="red">ACTT</font><font color="green"><u>AGTGGTGGTGCGTGCCTATAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCTCTTGAACCCAGCAGGCAGAGGTCACAGTGAGCCAAGATCA<br>GGCCACTGCACTCCAGCCTGGAAGACAGAGTGAGACTCCGTCTCAAAAAAAAGAAAA</u></font>gaaaagaaaagaaaatagcttcaggcttaggcgtggtggctca<br>cacctgtaatcccagcactttgggaggccaaggagggcagatcacctgagatcgggagtttgagaccagcctgaccaacatggagaaaccccatctctat<br>taaaaatacaaaattagccgggtgtggtggaatgcggctgtaatcccagctactcaggaggctgaggcaggagaatagcttaaacccaggacgcagaggt<br>tgca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	790	642	NA	intergenic
0	chr12	108790406	108790407	1002056	0	-	1104685034642	AGTTCAGATGGGTGACATTGC	GGCAATTTGGTCACCTTGTTA	SINE	Alu	NCAI	caggaacatcccatgttgtaagagatggctgtttgaagaggcaggcatggaggggcagcttggatggcaacttccaggtatatgct<font color="green"><u>GTGGCTCCTGCCTG<br>TAATTCCAGTGCTTTGGGAGGCCAAGGCGGGAGGATCACTTGTGGCTAGGAGTTCAAGACCAGCCTGGGCAACAAAGTGAGTCCCCATCTCTACAAAAAA<br>TTAAAAACAAAAAATTAGCTGGTCGTAGTGACATGTGTCTGTAGTCTCAGCTACTCCAGAGACTGAGGCTGGAGGATCACTTGAGCCTCGGAGGTCAAAG<br>CTGCAGTGAGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAAGCGGGTGGATCACGAGGTCAGGAGATCGCGACCATCCTGG<br></u></font><font color="red">TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAAGCGGGTGGATCACGAGGTCAGGAGATCGCGACCAGCCTGG</font><font color="green"><u>GTGGCTCCTGCCTGTAATTCC<br>AGTGCTTTGGGAGGCCAAGGCGGGAGGATCACTTGTGGCTAGGAGTTCAAGACCAGCCTGGGCAACAAAGTGAGTCCCCATCTCTACAAAAAATTAAAAA<br>CAAAAAATTAGCTGGTCGTAGTGACATGTGTCTGTAGTCTCAGCTACTCCAGAGACTGAGGCTGGAGGATCACTTGAGCCTCGGAGGTCAAAGCTGCAGT<br>GAGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAAGCGGGTGGATCACGAGGTCAGGAGATCGCGACCATCCTGG</u></font>caggaag<br>ctgaggcaggagaatggcgtgaacccagaaggcggagcttgcagtgagctgagatcgtgtcagtgcactccagcctggg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1121	889	NA	intron:GLTP:NM:016433:1/5
0	chr12	131955315	131955316	1002057	0	-	1104685428247	NA	NA	SINE	Alu	NCAI	cttcccctcgaccccagcagcagtcactccgcatgtccccttcccctcagccccagcagcagtcactccgcatgtccccttcccctcggccccaccagca<br>atcactccccatgtccccttcccctcggccccaccagcagtcactccccatgtccccttcccctcggccccaccagcagtcactccccatgtccccttcc<br>cctcggccccaccagcagtcactccccatgtccccttcccctcggccccatcagcagtcactccccatgtcccctccccccagcccctggcagctgcgtg<br>tgctttcggcctctggatttttctgttctagacacttcacagacatggaatcatgcgtgctcttttttgttgttgttgagacggagtctcgctct<font color="green"><u>NNNNN<br></u></font><font color="red">TCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTAC<br>AGGTGCCTGCAACCACGCCCGGCTAATTTTTTTTTGTTTTTTGTTTGTTTGTTTGTTTTGAGATGGAGTCTCGCTCTGTCGCC</font><font color="green"><u>NNNNN</u></font>tggagtgcagtg<br>gtgcgatctcggctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcctgcaaccacgc<br>ccagctaatttttttttgttttttgtttgtttgttttgagatggagtctcgctctgtcacccaggctggagtgcagtggcgcgatctcggctcactgcaa<br>gctccgcctcccacgccattctcctgggtccacgccattttcctgcctcagcctctgagtagctgggactacaggcacccgtcaccacgcctggctaatt<br>ttttgtatttttagtagagacggagtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgtccgatcgg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CHFR:NM:001161346:6/18	
0	chr13	21325597	21325598	1002058	0	+	1104685715631	TTCAGTGGGATAGAAAATTGGA	GGCACAATGTAATCAGAAACTCC	SINE	Alu	NCAI	tggaaagtcagtggcctttcaaatgttaatcccttgtgattttgccacttactgaaaatccttttctactaatgaagaatacattaggaaaaagccgtga<br>tgtttagtcttcttgctgatatttggtaccaagctatgcagccctcacagaacctctaatgaaatatctgccatggctgatcgtgtgtatgtgtctcagt<br>gagcatacaacattgatcagggcctcgggtttctttggagtgaagttcagtgggatagaaaattggagtttct<font color="green"><u>GCTCATGCCTGTAATCCCAGCACTTTG<br>GGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAAATCGAGACCATCCTGGCTAACACGGTGAAATCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGG<br></u></font><font color="red">GCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAAATCGAGACCATCCTGGCTAACACGGTGAAAT<br>CCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCACGGTG</font><font color="green"><u>GCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAG<br>GAAATCGAGACCATCCTGGCTAACACGGTGAAATCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGG</u></font>aggctgaggcaggagaatggcatgatcccgg<br>gaggcggagtttgccgtgagccgagatggcgccactgcactccagcctgggcgaaagagcaagaccccgtctcaaaaaaaaaaataaataaataaataaa<br>aaataaaaaaataaagaaaactggagtttctgattacattgtgccagatatctattttatggattcaggtccactatttatagaaccaagtaaaaactgt<br>tttagaattcagaacttggaaaaatatgtagctaccttcaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	599	330	NA	intergenic
0	chr13	112878857	112878858	1002059	0	+	1104685140641	GGGGAAATGTGCATAGTCTGA	AAGGTGGTATTCTTGCTGTGC	SINE	Alu	NCAI	ctgtgccgcgcggcccggagagagagaaagagggattcacactttgtagaatagcctctccttgaacaagcagctttcaaatgcagtaactttgcaaaga<br>tgagctcttatggtttgtgttcttctttagtaaattttttataaacggggaaatgtgcatactctgaaaaatggcagtgctggggactaaactgtgtccc<br>ccaaatttcttacattgaagtcctagccccagtgtgactgtatctggaggtaaggtcttcagggggtaactaaggctaaatgtggtcataagggtggggt<br>cctaacc<font color="green"><u>ACAGAACTGTGGCCTTATAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCCAGCACTTTGGGAGGCCGAGGTGGGGGAATTGC<br></u></font><font color="red">CCCCGACAGAACTGTGGCCTTGTAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCCAGCACTTTGGGAGGCCGAGGCGGGGGAATTGCCC<br>CGACAGAACTGTGGCCTTGTAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCAGCACTTTGGGAGGCTGAGGCGGGGGAATTGCCCCGAC<br>AGAACTGTGGCCTTGTAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCAGCACTTTGGGAGGCCGAGGCGGGGGAATTGCCCCGACAGAA<br>CTGTGGCCTTGTAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCCAGCACTTTGGGAGGCCGAGGCGGGGGAATTGCCCCGACAGAACTG<br>TGGCCTTGTAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCAGCACTTTGGGAGGCCGAGGCGGGGGAATTGCCCCGACAGAACTGTGGC<br>CTTGTAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCAGCACTTTGGGAGGCCGAGGCGGGGGAATTGCCCCG</font><font color="green"><u>ACAGAACTGTGGCCTTA<br>TAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCCAGCACTTTGGGAGGCCGAGGTGGGGGAATTGC</u></font>ttagcccaggcgttccagaccagc<br>ctgtgcaatattagcaagaccctgtctctacaaaaaataaaaaaattagttgggtgtggtggcatgcacctgtgctcccagctacttgggaggctgagga<br>gggaagatcacttgagtctcggaggtcgaggctgcagtaagcactgactgcactgccgcactccagcctgggtgacagagtgaggtcctgtctcaaaaaa<br>ggagggagagagtcatctctatctgtaccatctctagcacagcaagaataccaccttattcttaagtgtgcaactcagaagag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1210	537	NA	intergenic
0	chr13	113059490	113059491	1002060	0	+	1104685140705	CATCCACTGAAAGCCAAAGAA	AACCGTAAACCAAGTGTGCTG	SINE	Alu	NCAI	caaggtgatccacaatgtatgatcatctggacacgagcagatgatcatgtgctatgtgattactgagaaaatcaggctctggaaggacaggcccttgtct<br>gtccactgggcctcccactcctgg<font color="green"><u>GTGGCTCATGCCTGGAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCACGAGGTCAAGAGATCGAGACCATC<br>CTGGCCAACATGGTGAAACCCTGTCTCTACAAAAGATACAAAAATTAGCTGGACGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTG<br>GGCAGATCACCTGAGGTCCAGAGATCGAGACCAGCCTGGCCAACATGGTGAAACCTCATCTCTACTCAAAATACAAAAATTGGCTGGGCGTGATGGCTCA<br></u></font><font color="red">GTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCACGAGGTCAAGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCTGT<br>CTCTACAAAAGATACAAAAATTAGCTGGACGCGGTGGCTC</font><font color="green"><u>GTGGCTCATGCCTGGAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCACGAGGTCA<br>AGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCTGTCTCTACAAAAGATACAAAAATTAGCTGGACGCGGTGGCTCATGCCTGTAATCCCAGCACT<br>TTGGGAGGCCGAGGTGGGCAGATCACCTGAGGTCCAGAGATCGAGACCAGCCTGGCCAACATGGTGAAACCTCATCTCTACTCAAAATACAAAAATTGGC<br>TGGGCGTGATGGCTCA</u></font>aaaaaaagaatccctcttaagaaaccctctttctggtttagaaacatatttgaggatcatgtctcaggtaagaacatctcagca<br>cacttggtttacggtttattcacactgcttacgggaacat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	689	556	NA	intron:GRTP1:NM:024719:2/8
0	chr14	89324706	89324707	1002061	0	-	1104685286351	NA	NA	SINE	Alu	NCAI	atgccactgcactccagcctgggcaacaaaagcgaaactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaacagatcttactttatggtggatcttct<br>atacctttccactatttaaatttataataaaagtttaaggtatcaattaaaaatatggaaaaaggagtacataacttttcggaataatgttatggaatac<br>ttagcaaaaaacccgtgtagagcaccacttgcggcactttttttttttttgtctgggacatggagttttgcttctcctgcccaggctggagcgcagtggc<br>gcgatctcggctcaccgcaacctctgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcatgctccaccg<font color="green"><u>NNNNN<br></u></font><font color="red">AGCTAATTCTGTATTTTTAGCAGAGATGGGGTTTCATCATGTTGCTCAGGCTGGTCCTGAACTCCCGAGCTCAGGCAATCCGCCCTCCTTGGCCTCCCAA<br>AGTGCTGGGATTACAGGCGTGCTCCACCACGCCCA</font><font color="green"><u>NNNNN</u></font>ttctgtatttttagcggagatggggtttcatcatgttgcccaggctggtcctgaactccc<br>gagctcaggcgatccgccctccttggcctcccaaagtgctgggattacaggcgtgctccaccgcgcccggctaattctgtatttttagcagagatggggt<br>ttcatcatgttgcccaggctggtcctgaactcctgagctcaggcgatccgccctcctcggcctcccaaagtgctgggattacaggcgtgcgccaccgcgc<br>ccagctaattctgtatttttagcagagatggggtttcatcatgttgcccaggctggtcctgaactcctgagctcaggcgatccgccctcctcggcctccc<br>aaagtgctgggattacaggcgtgcgccaccgcgcc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	56657145	56657146	1002062	0	-	1104685219345	NA	NA	SINE	Alu	NCAI	gaacccacaaacatgttgtaatttttttttttttttggagactgagtctcgctttatcacccaggctggagtgcaatggtatgatctcggttcactggaa<br>actccgcctccctggctcaagcgattctcctgccaagtagctggaattataggcacacattaccatgcctggctaatttttgtatttttagtagagacag<br>ggtttcaccatgttggccaagctggtctcgagtccctgaccccaagtgatctgtccacctcggcctcccaaagtgcggggattataggcgtgagccacca<br>ctgtgcccagcctgtaagtttttttagtcagctaaaaaaaaaaaatccagccgggcacagtggcacatgcc<font color="green"><u>TGTAATCCCAGCACTTTGGGAGGCCGAGG<br></u></font><font color="red">NNNNNNNNNNNNNNNNNNNNTCAGATTTCAAGATGAGACTAGGCAGGGCCAAATAAACCATACCCAACCCACAGCACAGTCCTGGAAACAAATATGGATT<br>TCGGTACTAGGCGTGGGTTGCTGCTGTAACAAATACCTAAAATGAGGAAATAGCTTTGGAATTGGATAATGGGTAGAGGCTGGAAGAATTTGGAGGTACA<br>TAATAGAAAAAAGCCTACATTGCCTTGAGTAGACTGTTGGTAAAAAACAAAAATATATATATATATAGATAGATAGATAGATAGATGATAGATAGATAGA<br>TAGATAGATATAGATATTAAAGATGCTGATGTTGGCTGGGTGCGGCGGCTCATGCCTATAATCTCAGCACTGTGGGAGCCTGAGGCGGGCGGATCACTTG<br>AGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGGGGCGCATGTAATCCCA<br>GCTACTGGAGAGGCTGAGGCAGAGGCTGATATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTTTGTCTCCAAAATAAAATAAAATAAAATA<br>AAAATAAATAAATAAATAAAGATGCTGGGCGGGCGCAGTGGCTCACACTT</font><font color="green"><u>TGTAATCCCAGCACTTTGGGAGGCCGAGG</u></font>gggcggaccacaaggtcagga<br>gttcaagaccagcctgaccaacacagtgaaaccccgtctctactaaaaataaaaaaattagctgggcatggtggcgcacgcctgtagtcccagttactca<br>ggaggctgaggcaggagaatcgcttgaacccagaaggcggaggttgcagtgagtgaaccaagattgcgccactgcactccagcttggtgatagaatgaga<br>ctctgtctcaaaaaaaacaaaacaaaacaagaaagaatccaatccaacctgtaatttttttttttttttttttttttgagacagagtgtcttgttctgtc<br>acccaggctggagtgcagtggcacgatcttggctcactacaaccttcacc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	16169654	16169655	1002063	0	+	1104685488440	NA	NA	SINE	Alu	NCAI	aggattttgaaagggctatttgccacccaaatgaggatttgggttaattccagggctcggctgactctgagaatccctaatttcctcttggttaagtaac<br>cattcgccttgagtattccactgtacatgcagttgtggtgagtaggtgtacaggttcttaggactagaagagtcctcaagttcaggcctggcgcccccta<br>ttttacaggggaggtcacaggctcacagcattttggtgatgtggccaatgtcacccagtgaatgaggacgaatcaacatgaaaacgaggcaactgtcctt<br>taaagatgaa<font color="green"><u>CCAGGCCGGGCGTGGTGGCTCATGCCTGTGATCCCAACACTTTGGGAGGTTGAGGCGGAGGATTGCCTGAGCCCAGGAGTTTGAGACCAG<br></u></font><font color="red">GGCCGGGCCTGGTGGCTCATGCCTGTGATCCCAACACTTTGGGAGGTTGAGGCGGAGGATTGCCTGAGCCCAGGAGTTTGAGA</font><font color="green"><u>CCAGGCCGGGCGTGGTG<br>GCTCATGCCTGTGATCCCAACACTTTGGGAGGTTGAGGCGGAGGATTGCCTGAGCCCAGGAGTTTGAGACCAG</u></font>cctgggcaacacggcgaaaccgtctct<br>atcaaaaacaaaaattagccagcatggtggcatgtgcatgtagtcccagctactcgggaggctgaggtgggaggattgcttgagcccaggaggcagaggt<br>tgcagtgagccgagttcgtgccactgcattccagcctgggtgacaaagccagacccagtctatatatatgtgtgtgtgtgtataaataagaagccaaact<br>cacatgtgcactcctgttactcccttcagccaggccacgtattaaaaggagaagaaccaggggttggggacagggtgggcgag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ABCC6:NM:001171:22/31	
0	chr16	88211816	88211817	1002064	0	-	1104685077899	NA	NA	SINE	Alu	NCAI	gtattacacaatatgaagatgaatggtaaatacatgctaataatttaaaattttaatttttcttgacttagaatgatgattttttatttttattttttta<br>tattttttgagactgagtctcgctctgtcgcccaggatggagtgcaggggcacaatctcagctcactgcaacctccgtctcccaggttcaagtgattctt<br>gtgcctcagcctcccgagtagctgggattacaggtgcgtgccaccacacacagctaatttttgtatttttagtagagatggggtttcaccatgttggcca<br>ggctagtctcaaactcctgacctcaaatgatctgcccgtcttggcctcccacagcgctgggattacaggtgtgagccactgcgcccggcctccca<font color="green"><u>NNNNN<br></u></font><font color="red">CTGGGATTACAGGTGTGAGCCGCCGCACCCGACCTCCCAAAGTGCTGGGATTACAGCCCTGAGCCAGCACGCCCAGCCTCCCACAGCGCTGGGATTACAG<br>GTGTGAGCTGCCGCGCCCAGCCTCCCACAGTGC</font><font color="green"><u>NNNNN</u></font>ttacaggtgtgagccaccgcgcccggcctcccaaagtgctggggttacaggtgtgagccacc<br>gcgcccggcctcccacagcgctgggattacaggtgtgagccgccgtgcccgacctcccaaagcgctgggattacaggtgtgagccgccgcacccgacctc<br>ccaaagtgctgggattacaggtgtgagccgccgcgcccggcctcccaaagtgctgggattacaggtgtgagccgccgcgcccggcctcccaaagtgctgg<br>gattacaggtgtgagccgccgcgcccggcctcccaaagtgctgggattacaggtgtgagccgccgcgcccggccgccttccagcatttctggcacagacc<br>ggcacaggtgtgggctcctgtcctttgcatgtt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DPEP1:NM:001128141:1/11	
0	chr17	7390485	7390486	1002065	0	-	1104685549247	CTCCATCCCATAATCCATGTG	CACCTGAGGTCAGGAGTTCG	SINE	Alu	NCAI	atctctacaaaaaatacaagaaaaattatccaggtgcgatggcatgctcctgtagtcccagctactgtggaggctaagtcaggaggatcacttgatccca<br>ggagtttgaggttgcagtgagctatgatcaccccattgaaccgaagcctcggcagcagagtgagaccctgtctctataaaaaataaaataaataggccgg<br>gcacagtggctcatgcctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatgtagtg<br>aaacaccatctctactaaaaaatacaaaaattagctgggcatggtggtgcacacctgaagttccagctacttgg<font color="green"><u>AAATAAAATAAATAGGCCGGGCACAG<br>TGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGTAGTGAAACAC<br>CATCTCTACTAAAAAATACAAAAATTAGCTGGGCATGGTGGTGCACGCCTGAAGTTCCAGCTACTTGGGAAGCTGAGGCAGGAGAACTGCTTGAAATAAA<br>ATAAATAGGCCGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACGAGATCAAGAGTTTGAGACCAGCCTGGCC<br>AACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCACGCCTGTAATCCCAGCTACTCGAGAGGCTGAGGCAGGAGAA<br></u></font><font color="red">AATAAAATAAATAGGCCGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACGAGATCAAGAGTTTGAGACCAGC<br>CTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGTGCACGCCTGAAGTTCCAGCTACTTGGGAAGCTGAGGCA<br>GGAGAA</font><font color="green"><u>AAATAAAATAAATAGGCCGGGCACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACCTGAGGTCAGGAGTTC<br>GAGACCAGCCTGGCCAACATGTAGTGAAACACCATCTCTACTAAAAAATACAAAAATTAGCTGGGCATGGTGGTGCACGCCTGAAGTTCCAGCTACTTGG<br>GAAGCTGAGGCAGGAGAACTGCTTGAAATAAAATAAATAGGCCGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGAT<br>CACGAGATCAAGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCACGCCTGTAA<br>TCCCAGCTACTCGAGAGGCTGAGGCAGGAGAA</u></font>ggcgcagtggctcatgcctgtaatcccagcactttgggaggccaaggcaggtggatcacgagatcaag<br>agtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggcatggtggcgcacgcctgtaatcccagctactc<br>gagaggctgaggcaggagaatcacttgaacctgggaggcagaggtcgcagtgaggcgagattgtgccactgcactccagcctgggcgacagagtgagagt<br>tcatctctcagaaaaataaaaataaaaaataaaataaaataaatgaaacacaagctataacacaacataattgtatttaattgatacagtatcaatttag<br>ggcctt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	803	589	NA	intergenic
0	chr17	68209737	68209738	1002066	0	-	1104685275526	GTTGAGGGACCATCTCCTTGT	GTGATCTGTCCACCCTGAGAA	SINE	Alu	NCAI	aggtgctgcctaaagaaaaaaacagtagcctcctatctttggactcagtagaacacaggaagatagggttagcttgcgagtttatgagagcatgtggatt<br>ggtatatccaaggttagtgatctgtccaccctgagaaatgtctatgttcttttttattttattttatggagacagagtctcactccattacctaggctgg<br>agtgcagtggtgtgatcacagctcactgcagcctccatctcccaggctca<font color="green"><u>GCTGAGGTGGAAGGACTGTTTGAGCCCAGAAGTTAAGTTTGAGACCAGCC<br>TGGGTGATATAAAGAGACCCCATCTCTATAGAATGTTTAAAAATTAGCCAGCTGTGGTGGTGCCTGCCTGTAGTCCTGGCTACTCAGGAGGCTGAGGTGG<br></u></font><font color="red">CCACCTCAG</font><font color="green"><u>GCTGAGGTGGAAGGACTGTTTGAGCCCAGAAGTTAAGTTTGAGACCAGCCTGGGTGATATAAAGAGACCCCATCTCTATAGAATGTTTAAA<br>AATTAGCCAGCTGTGGTGGTGCCTGCCTGTAGTCCTGGCTACTCAGGAGGCTGAGGTGG</u></font>tgctgagattacaggcgtgagccaccacactctgcgtgtct<br>atgttctttttttttttcttttccttccttccttccttttctttctctttctttctttctctttttctttttttttttttttttgagacagaatctccct<br>ctgtctcccaggctggagtacagtggtacaacctcggctccctgcaacctccgcctcccaggttcaagcaattcttgtgcttcagcctccccagtagctg<br>ggactacag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	957	817	NA	intron:SLC39A11:NM:001159770:7/10
0	chr19	4512918	4512919	1002067	0	-	1104685559535	NA	NA	SINE	Alu	NCAI	cgcaaggacaaacactgtgtgacccactcctaggaagtccctagagtcatcaggttcactgagacagtaggatgggaggtgccaggggctggggaggggg<br>gtgaggagtgagtgtttcatggggacagaatttcagtttgggaag<font color="green"><u>CCCGGCTAATTTTTGTATTTTTAGTAGGGATAAGGTTTCACCATATTGGCCAGGC<br>TGGTTTTGAACTCCTGACCTCAGGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCCCCCGGCCAATTTTTGTATTT<br>TTAGTAGGGATAAGGTTTCACCATATTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG<br></u></font><font color="red">CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAATATGGTGAAACCTTATCCCTACTAA<br>AAATACAAAAATTGGCCGG</font><font color="green"><u>CCCGGCTAATTTTTGTATTTTTAGTAGGGATAAGGTTTCACCATATTGGCCAGGCTGGTTTTGAACTCCTGACCTCAGGTG<br>ATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCCCCCGGCCAATTTTTGTATTTTTAGTAGGGATAAGGTTTCACCATAT<br>TGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG</u></font>gacagagcaggactcttgtctccaaa<br>aaaaaaaaaaaaaaaaaaaaagagcactcaccccttgggggtgctgtgaagattaaatgagttaatttaagtacttatgataatgcctggcacctagcaa<br>gtgctttatgtttgctagg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr19	17694248	17694249	1002068	0	+	1104685513355	CTTGTGGCTTCCTGACACTTC	CAAGCAATTCTCCAACCTCAG	SINE	Alu	NCAI	cttcatggggcagaaagtggagctggaaatcctgtctgctgtgtgtgaacttcgtggccacttcccttctttatgccttgatttccccacctgaatgggg<br>caatatccctgtgtggcaaaaagcatgctaaggctgggtggggtggctctcgcctgtaatcccaacactttgggaggtcaaagtgggaggattttttgag<br>gtcaggagttcaaaaccagctgg<font color="green"><u>GAAACCCTGTCCCTACTGAAAATGCAAAAATGAGCTGGACCTGGTGGTGCACACCTGTAGTCCCAGCTACTCAGGAG<br>CCCGAGGAGGGAGGATCGCTTTTACCCAGGAGGCAGAGGCTGCAGTGAGCTAAGATTGTGCCACTGCACTTCAGCCTGGGCAACAGAGCGAGACCCTGTC<br></u></font><font color="red">GAAACCCTGT</font><font color="green"><u>GAAACCCTGTCCCTACTGAAAATGCAAAAATGAGCTGGACCTGGTGGTGCACACCTGTAGTCCCAGCTACTCAGGAGCCCGAGGAGGGAG<br>GATCGCTTTTACCCAGGAGGCAGAGGCTGCAGTGAGCTAAGATTGTGCCACTGCACTTCAGCCTGGGCAACAGAGCGAGACCCTGTC</u></font>aaacttaggcctg<br>acatggtggctcacacctataatcccagcactttggaaggctgaggtgggtggatcacctgaggtcaggagttcgagaccagcctgaccagtatggtgac<br>accccatctctactaaaaatacaaaaattagctggttgtggtggcaagcgcctataaccccagctacttgggagactgaggttggagaattgcttgaact<br>caggaggcag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	812	646	NA	intron:MAP1S:NM:018174:2/7
0	chr19	9038588	9038589	1002069	0	-	1104685282581	GCAAGCGGTAGTCTCTGCTATT	TGATAGGTGCTGGAGATAAGCA	SINE	Alu	NCAI	tgacctcatgatccacctgacccagcctcccaaagtgctgggattacaagtgtgagccaccatgcccagcccacttattctttaattcacatatttattc<br>atttagcaagcatattctaagttgataggtgctggagataagcaataagacttagatgaccaagtgcagtggctcatgcctataatcccagcacattggg<br>aagtagagtcgggaggattgcttgagctcaggagttcgagaccagactgggcaacatggtgaaaccctgtctctactaaaaatacaaaaattagccagat<br>gtggtggtgcacacctgttaacccagctactcgggagactgaggtgggaggatcacttgagcctgggaggtggaggttgcagtgagctatcgcac<font color="green"><u>NNNNN<br></u></font><font color="red">CACTCCAGCCTGTGTGACAGAGCAAGACCTTGTCTCTCAAAAAAAAAAAAAATAGGCCGGGCCTGGTGGCTTAGGCCTGTAATGCCAGCACTTTGAAAGG<br>CCGAGGCGGGCAGATCACCTGAGGCCAGGAGTTCGAGATTAGCCTAGCTAACATGGTGAAACCCTGTCTCTATTAAAAGTACAAAAATCTACTAAAATTA<br>CAAAAATGGTGGCACTGCCTGCAGTCCCAGCTACTCAGGAGGCTGAGGCAGAAGAATCACTTGAACTCGGGAGGCGGAGGTTGCAGTGAATCAAGATCAC<br>GCCACCGT</font><font color="green"><u>NNNNN</u></font>agcctggcgacagagcaagactccatctaaaaaaaaaaaaaattacccaggtgtagtggcgtgcacctgtaatcccagctacttggg<br>aggctgaggcagaagaatcgcttgaatcctcctgagtagctgggattacaggtgcccaccaccacacccagctgatttttgtatttttagtagagatggg<br>gtttctccatgttggtcaggttggtctcgaactcccgacctcaggtgatccaccctcctcggcctcccaaagtgctgggattacaggcatgagccactgc<br>gcccagcctgaaaactgttgctgaatgcagtcacatcggaagtaaaggcttcaacttgtgaatttgagggggatacaattcagagcgtcacagagagaga<br>acatgagg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1015	708	NA	intergenic
0	chr2	131603438	131603789	1002070	0	-	1104685027690	GGGTAAAGGAGTGAGGGAGTG	AATTCATAGGCAAAAAGCAGTC	SINE	Alu	NCAI	gcttgcgcctgggaggtcgaggctgtagtgagccaagatcacaccactgcactctagcctggatgagagagaggggctctatctcaagaaaaaaaaaaga<br>agaaaagaatgctattaacatccctattacccttacactcttatgtaaacatctccacagggcaaattccaaagactgaaaataccacatcaaaggataa<br>aaacataatttatttcagcaggtattgccaaaatgccctgcaaaacgattctaacaatctctatacctaccaactttacactatattgtcaaaaaaaact<br>agatatctgaaccttaagtatcacaagagctttcttaattcataggcaaaaagcagtctctcacgcctgtaatcccagcacttcgggaggtcaag<font color="green"><u>NNNNN<br></u></font><font color="red">TGATCACCTGAGGAATGCAACTTAACTGCATTCCTTAGAAAGCTAGAACACTTGGGCTGGGTGTGGTGGCTCAAGCTTGTAATCCCAGCACTTTGGGAGG<br>TCAAGGCGGATG</font><font color="green"><u>NNNNN</u></font>cctgaggtcaggagttcgagaccagcctggccaacatggtaaaaccaagcttctactaaaaacacaaaattagctgggcgtgg<br>tggcacatgcctgtaatttcagctactccagaggctgaggcaggagaagtgcttgaacccgggaggcagaggttgcatgagcggagattataccattgca<br>ctctagcctgggcaacaagagcgaaactccatctcaaaaaacaaaatagtgttctcttgtgcactccctcactcctttaccccttactttcttactgacc<br>ctatccctcttatcttcatcaattcctttnnnnnnnnnnnnnnnnnnnnnnnccacacccagcccaagtgttctagctttctaaggaatgcagttaagtt<br>gcaaaattcccc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	446	335	NA	intron:PLEKHB2:NM:001100623:4/8
0	chr2	86777959	86777960	1002071	0	+	1104685782245	NA	NA	SINE	Alu	NCAI	tgagtagctgggactacaagcgcatgccaccacgcccagctaatttttgtatttttagtagagacagggtttcactgggttggccaggatggtcttgatc<br>tcttgacctcgtgatccacccgccttggcctcccaaagtgctgggattacaggtgtgagccaccacgcctggcctttttttttttttttcaagtacagat<br>gaggtcttgctacgttgcccaggctggtcttgaactcctgggctgaagtgatcctttcacctcggcctcccaaagtgctgggtttacaggtatgagccac<br>cacacccagcttaattatttcttaaattgtgc<font color="green"><u>TATTGGCTGGGTGCGATGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCAC<br></u></font><font color="red">CGAGGTCAAGAGATTAAGACCTTCCCGGGCAACCCGGTGAAACCCTGTCTCTACTAAAAATACAAA</font><font color="green"><u>TATTGGCTGGGTGCGATGGCTCGCGCCTGTAATC<br>CCAGCACTTTGGGAGGCCGAGGCAGGTGGATCAC</u></font>ctgaggtcaggagttggagaccagcctggccaacgactctggagactaaggcaggagaactgcttg<br>aacccaggaggcagaggttacagtgagccgagatcgcaccattgtactccagcctgggcaacaagagcgaaactccgtctaaaaaaaaaaattgtgcata<br>ttgctggccttttctttaccttcttatatagctctgtgtcttgtcagttggagcttagatgcacagagccacatcttttttggaagagactttggatact<br>atgatctcccaacctcttcaacttatagacaaggaaacaaaggcacagagaatgtcttacctaagg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr20	41758668	41758669	1002072	0	-	1104685521487	NA	NA	SINE	Alu	NCAI	ctaaaaatacaaaaattagctgggcatggtgctgcatgcctgtaatcccagctactcgggaggctgag<font color="green"><u>GTGGCTCACGCCTGTAATCCCAGCACTTTGGG<br>AGACTGAGGCGGGGAGATCACGAGGTCAAGAAATCGAGACCATCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCAT<br>GGTGCTGCATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTCAACCCGGGAGGCGGAGGTTGCAGTGAGCCAAGGTCACACCACT<br>GCACTCCAGCCTGGCAACAGAGTGAGACCCCATCTAAAAACAAAAAAATCAACCACACAGTTCAGCAAATGTACAAAGAAACTGAACAATGATGATCATT<br>ATAGCATTGATGGAAATAGTAACAGATGTTTGACAATATAATGGTTAAATAAGATACGGCAAATTCAGGAATGTTGGAGATCTGAATACACATAACAACA<br>TGGAACGATATGTTAAATAGAAAAAGAAAGTTGTAAAAGAGTAAGACATCGTCTAATTTTAAGCCTGGTGTGGTGGCTCACGCCTGTAATCCCAGTATTT<br>TGGGAGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCCCAATTAGCCAGGCATGGTGGCACATGCTT<br>GTAATCCCAGCTACTCGGCAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCGGTGAGCCAAGATCATACCACTGCACTCCAGCCTGG<br></u></font><font color="red">TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACTGAGGCGGGGAGATCACGAGGTCAAGAAATCGAGACCATCCTGGCCAACATGGTGAAACCCCATC<br>TCTACTAAAAATACAAAAATTAGCTGGGCATGGTGCTGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTCAACCCGGGAGGC<br>GGAGGTTGCAGTGAGCCAAGGTCACACCACTGCACTCCAGCCTGG</font><font color="green"><u>GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACTGAGGCGGGGAGATCACGA<br>GGTCAAGAAATCGAGACCATCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGCTGCATGCCTGTAATCCCA<br>GCTACTCAGGAGGCTGAGGCAGGAGAATCACTTCAACCCGGGAGGCGGAGGTTGCAGTGAGCCAAGGTCACACCACTGCACTCCAGCCTGGCAACAGAGT<br>GAGACCCCATCTAAAAACAAAAAAATCAACCACACAGTTCAGCAAATGTACAAAGAAACTGAACAATGATGATCATTATAGCATTGATGGAAATAGTAAC<br>AGATGTTTGACAATATAATGGTTAAATAAGATACGGCAAATTCAGGAATGTTGGAGATCTGAATACACATAACAACATGGAACGATATGTTAAATAGAAA<br>AAGAAAGTTGTAAAAGAGTAAGACATCGTCTAATTTTAAGCCTGGTGTGGTGGCTCACGCCTGTAATCCCAGTATTTTGGGAGGCCAAGGTGGGCAGATC<br>ACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCCCAATTAGCCAGGCATGGTGGCACATGCTTGTAATCCCAGCTACTCGGCAGGC<br>TGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCGGTGAGCCAAGATCATACCACTGCACTCCAGCCTGG</u></font>ccagcctgaccaacatggagaaa<br>ccccaattagccaggcatggtggcacatgcttgtaatcccagcta	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MYBL2:NM:002466:6/14	
0	chr20	48013280	48013281	1002073	0	-	1104685523492	NA	NA	SINE	Alu	NCAI	taagataacaaccagaatcatgactgacacagtcacacaagaaacatcagacttttataaattgaatataatctttagaatattcacattaattggccgg<br>gcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggtggatcacaaggtcaggagttcgagaccagcctggccaacatagggaaac<br>cctgtctc<font color="green"><u>GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGC<br>CAACATAGGGAAACCCTGTCTCTACTAAAAAATACAAAAAATAAGCCAGGCTGGTCGTGGGTGCCTATAATCCCAGCTACTCAGGAGGTTGAGGCAGGAA<br>AATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCTGAGACTGTGCCATTGCACTCCAGCCCAGGCAATAGTGTGAGACTCTGTCTCAAATTAAAAAA<br>AAAAAAAATTCACGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGTAGCATGAGGTCAGGAGATCGAGACCATC<br>CTGGCTAACACGGTGAAACCCTGTCTCTACTAAACAAAATACAAAAAATTAGCTTGGCGTGGTGGCGGGCGCCTGTAGTCCTAGCTACTCTGGAGGCTGA<br>GGCAGGAGAATGGTGTGAACCTGGGAGGTGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATAGG<br>GAAACCCTGTCTCTACTAAAAAATACAAAAAATAAGCCAGGCTGGTGGTGGGTGCCTATAATCCCAGCTACTCAGGAGGTTGAGGCAGGAAAATCGCTTG<br>AACCCGGGAGGCGGAGGTTGCAGTGAGCTGAGACTGTGCCATTGCACTCCAGCCCAGGCAATAGTGTGAGACTCTGTCTCAAA</font><font color="green"><u>GGCCGGGCGCGGTGGCT<br>CACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATAGGGAAACCCTGTCTCTAC<br>TAAAAAATACAAAAAATAAGCCAGGCTGGTCGTGGGTGCCTATAATCCCAGCTACTCAGGAGGTTGAGGCAGGAAAATCGCTTGAACCCGGGAGGCGGAG<br>GTTGCAGTGAGCTGAGACTGTGCCATTGCACTCCAGCCCAGGCAATAGTGTGAGACTCTGTCTCAAATTAAAAAAAAAAAAAATTCACGGCCGGGCGCGG<br>TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGTAGCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCTGTC<br>TCTACTAAACAAAATACAAAAAATTAGCTTGGCGTGGTGGCGGGCGCCTGTAGTCCTAGCTACTCTGGAGGCTGAGGCAGGAGAATGGTGTGAACCTGGG<br>AGGTGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAA</u></font>ctactctggaggctgaggcaggaga<br>atggtgtgaacctgggaggtggagcttgcagtgagccgagatcgtgccactgcactccagcctgggcaacagagtgagactccatctcaaaaaaaaaaca<br>aactcacattaataaaatatccagataaatttaactttagaagagattaacataaccaaaattatgacagataatattaggta	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	54000340	54000341	1002074	0	-	1104685207907	TGGCTGCTTAGGACTTACCAT	GAGTCATCAGGTCAACAATCTAAAA	SINE	Alu	NCAI	gttaaacagtggaggccagcctggccaacatggcaaaacacaatcccaaattact<font color="green"><u>GCTCACGGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCTTGCC<br>TCAGCCTCCCACATAGCTGGGGTTACAGGCGCCTACCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGAGGGGGTTTCACCACGTTGAAGGCTGGT<br>CTAGAACTTCTGACCTCAGGTGATCCACCCACCTCAGCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCGGCCTTCTTATATTTTTTGAGACAG<br>CATCCCACTCTGTCATCCAGGCTGTGGTGTAGTGGCCCAGTCTCAGCTCACTGCAACCTCCACCTCCCAGGTTGAGGCAATTCTCATGCCTCAGCCTCCC<br></u></font><font color="red">GGGAGGCTGAGGCATGAGAATTGCCTCAACCTGGGAGGTGGAGGTTGCAGTGAG</font><font color="green"><u>GCTCACGGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCTTGCCT<br>CAGCCTCCCACATAGCTGGGGTTACAGGCGCCTACCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGAGGGGGTTTCACCACGTTGAAGGCTGGTC<br>TAGAACTTCTGACCTCAGGTGATCCACCCACCTCAGCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCGGCCTTCTTATATTTTTTGAGACAGC<br>ATCCCACTCTGTCATCCAGGCTGTGGTGTAGTGGCCCAGTCTCAGCTCACTGCAACCTCCACCTCCCAGGTTGAGGCAATTCTCATGCCTCAGCCTCCC</u></font>a<br>aaaaataaataaataaaaataaaaaatgaaataaaatgaaaagtcaaacaattg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	937	647	NA	intergenic
0	chr3	156868571	156868572	1002075	0	+	1104685603442	CCCACCACTTTTTAAATGCAG	ATTTGCTGGGTGATGTGACTC	SINE	Alu	NCAI	ttgtgttaatattcttaataatcacatgccaacttccccaccactttttaaatgcagtaaccaaaactgaaccctttcatcaaaagagtcatgttggccg<br>agcgcgatggcacatgcctgtaatcccagcactttgggaggctgaggggggtggatcacctgaagtcaagagttgaagaccagcctggccaacatg<font color="green"><u>TTTT<br>TTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAAACTTGGCTCATTGCAAGCTCTGCCTCCTGGGTTC<br>AAGCAATTATCCTGCCTTAGCCTCCTGAGTAGCTGGGATTACAGGCACACGCCACCACTCCTGGCTAATTTTTGTATTTTTTTTTTTTTTTTTTTTTTTT<br></u></font><font color="red">AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAAACTTGGCTC<br>ATTGCAAGCTCTGCCTCCTGGGTTCAAGCAATTATCCTGCCTTAGCCTCCTGAGTAGCTGGGATTACAGGCACACGCCACCACTCCTGGCTAATTTTTGT<br>ATTTTTTTTTTTTTTTTTTTTTTTT</u></font>caaagagaatgctagtcaggaactgctaacactatttgcagtaacaatcaacaagttgagaactttcatctgttt<br>gttgctctctgtgaacctcatcggggcttctgccaagcctgccaatatttgcttcactttgctttgtttctgttcttaataacacttacccgagcttaga<br>acaagaaaaagcactggactt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	587	404	NA	intron:PLCH1:NM:001130960:1/23
0	chr4	25419663	25419664	1002076	0	+	1104685316592	NA	NA	SINE	Alu	NCAI	tagacatcaataggaaagtcgtttttagtttcaagcttctgaaaggtgtaatgcatccaaggtagaagtttgaaaggggaaaaaaaggaaaggagaaaat<br>gtcacttaactattaaaaggaatgatctacaccaagttgactggtttgtaaaaacacagggcattcctcatttgcactctgacctggagatcctcattgg<br>gctcacagcctgctttctttttctttttcaaaaaaagcctatttgggc<font color="green"><u>CGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCA<br>GGAAATCGAGAACACCCTGGCTAACACGGTGAAACCCCTATCTCTACTAAAAATACAAAAAAAAATTAGCAGGGTGTGGTGGCGAGTGCCTGTAGTCCCA<br></u></font><font color="red">CGCCTGTAATCCC</font><font color="green"><u>CGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAAATCGAGAACACCCTGGCTAACACGGTGAAAC<br>CCCTATCTCTACTAAAAATACAAAAAAAAATTAGCAGGGTGTGGTGGCGAGTGCCTGTAGTCCCA</u></font>gtgaggcaggagaatggcgtgaacccgggaggcag<br>agcttgcagtgagccaagatcgcgccactgcactccagcctgggcgacagagtgagactctgtctcaaaaaaaaaaaaaaaagcctatttgtatctttct<br>atgtactgggtaaattttcttttctttcttcttttttattttattttattttattgagacagaatcttgctctgtcgcccagactgcagtgcagtggcat<br>gatcttggctcat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:KIAA0746:NM:015187:9/24	
0	chr4	14444794	14444795	1002077	0	+	1104685313903	TTCGCTATTTTTCTATTCACTTGC	AACGTGGGCCTACAGCATAG	SINE	Alu	NCAI	atatgtgtttcttcagactaaaacatcacagcagtgttgggttaaactattcttttaaatttgattttaaaattatatgtgcttttaatagaaaaattag<br>aaagcacagaaaatcaaaaataaggaaaaatcataacctacaattccagttccttgtggcaaccacagtttaactttggggcatttcctttctgacattt<br>tgtttcaatgcaaatttcgctatttttctattcacttgctttaagtagttaagact<font color="green"><u>GGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCC<br>AAGGCAGGTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGACAATATGGTGAAACACGGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGG<br></u></font><font color="red">GGGCGTGGTG</font><font color="green"><u>GGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGACA<br>ATATGGTGAAACACGGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGG</u></font>tagtcccagctacttgggaggctgaggcaggagaatcacttgaacc<br>tgggaggcggaggttgcagtgagccaagatcgtgccactgacagagtgagacttcatctcaaaaaaaaagtaaacaaaagactatgctgtaggcccacat<br>tcatatttgacttgctcacctaatgatgtgctataagtattaatgctttgagttgctattatttatcatccccacatgtctgacagcttttcccagaaag<br>gtaattcaac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	495	363	NA	intergenic
0	chr4	161813425	161813426	1002078	0	+	1104685734425	NA	NA	SINE	Alu	NCAI	tagcaatattttgtgtatcttgattgccacaatatgccttgtacaacgaatgctttctttatcactggaaatagagttattagtacctttaaatctagtc<br>acattctagagccaatttttatttatttatttatttgagatggagtctcgctctgtcacccaggctggagtgcagtggtgcaatctcggctcactgcaat<br>aaccgcctcccgggttca<font color="green"><u>GCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGACTACAGGCTCATGCCAGAAGAGCTGGCTAATTTTTGTATTTTTAGT<br>AGAGATGAGGTTTCACCATATTGGTCAGGCTGATCTCAAACTCCTGACCTCAGGTGATCCACCCACCTCAACCTCCCAGCGTGCTAGGATTACAGGTGTG<br></u></font><font color="red">NNNNNNNNNNNNNNNNNNNN</font><font color="green"><u>GCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGACTACAGGCTCATGCCAGAAGAGCTGGCTAATTTTTGTATTTTTA<br>GTAGAGATGAGGTTTCACCATATTGGTCAGGCTGATCTCAAACTCCTGACCTCAGGTGATCCACCCACCTCAACCTCCCAGCGTGCTAGGATTACAGGTG<br>TG</u></font>agccaccacacccagccgggtatagagccaatttttaaacaactacaatgaattcagaacatataacctcaagattctgttcctgtagaaccacatcc<br>agtacttaaatttgggttagagttcaaccagagaagaagaagcagtaggagatgtatttaaacagatttattgcagtaacttggtgtgtgtgattgtggg<br>gctgttcaaaattcgtagag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	 RI sequence unavailable	NA	NA	NA	NA	intergenic	
0	chr4	129092284	129092285	1002079	0	+	1104685449200	NA	NA	SINE	Alu	NCAI	gagtgtagtgacccgatctcggctcactgcaacctccgactcctggattcaagcgattctcctgcctcagcctcccgagcagctgggattacaggctcct<br>gccaccacaacaggctaattttgtacttttagtagagatgaggtttctccatgttggccaggc<font color="green"><u>GGTCTCGAACTCCTGACCTCAGGTGATCTGCCTGCCT<br>TGCCTCCCAAAGTGTTGGGATTACAGGCATTAGCCACTGCGCCCAGCCATTACTGTCAATTTTAGAACACATTTGTCACCTCAAAAAAAACTCTATACCC<br>TTCAGCTATCACCCTGTTTCATCCCCTCTCCTGCCAGCTGTAAACAACCACTAATGTACTTTGTTTGTACTCTATAGAGTTTTATCTGTATTTTCATACA<br></u></font><font color="red">ATCTAGCCTCCCGTAATAGCTGGGACTACTGTCTTGTCGCCACCACTATATTTTTTTTTTTTTTTAGACAGGTTCGCTTGTACCAGGTCGGATTTGTTTA<br>TTTGTCA</font><font color="green"><u>GGTCTCGAACTCCTGACCTCAGGTGATCTGCCTGCCTTGCCTCCCAAAGTGTTGGGATTACAGGCATTAGCCACTGCGCCCAGCCATTACTGT<br>CAATTTTAGAACACATTTGTCACCTCAAAAAAAACTCTATACCCTTCAGCTATCACCCTGTTTCATCCCCTCTCCTGCCAGCTGTAAACAACCACTAATG<br>TACTTTGTTTGTACTCTATAGAGTTTTATCTGTATTTTCATACA</u></font>atagaataatataatacatggtcttttgtcttgtcttctttcacttagtatttttt<br>tttttttttttgagacagagtctcgctatgtcaccaggctggagtgcagtggcgcaatctcggctcattgcaatctccgcctcccgggttcaagcaattc<br>tcacacc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MFSD8:NM:152778:3/13	
0	chr5	177538722	177538723	1002080	0	+	1104685059034	NA	NA	SINE	Alu	NCAI	ttccttgtgcccaggagttcgaatccagcctgggcaacatatggagaccctgtctccaaaacaaaacacagaaagaaaaagaaaaaagacgatggctcac<br>gcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaagtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctact<br>aaaaatacaaa<font color="green"><u>TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAAGTCAGGAGTTTGAGACCAGCCTGGCCAACATG<br>GTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCGCACGCCTGTAATCCTAGCTACTTGGGAGGCTGAGGCACAAGAATCACTT<br>GAACCCCGGAGGCGGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTTTGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAGGCCGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATCAAGAGGTCAGGAGATCGAGACCATTCTGGCTA<br>ACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCAGGTGTGGTGGCAGATGCCTGTAGTCCCAGCTACTTAGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCTGGGAAGCAGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCATTCCAGCCTGGGCAACAGAGAGAGACTCTGTCTCAAAAAAAAAAAA<br></u></font><font color="red">TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATCAAGAGGTCAGGAGATCGAGACCATTCTGGCTAACATGGTGAAACCCTGTC<br>TCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCGCACGCCTGTAATCCTAGCTACTTGGGAGGCTGAGGCACAAGAATCACTTGAACCCCGGAGGC<br>GGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTTTGTCTCAAAAAAAAAAA</font><font color="green"><u>TGGCTCACGCCTGTAATCCCA<br>GCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAAGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAA<br>TTAGCCAGGCGTGGTGGCGCACGCCTGTAATCCTAGCTACTTGGGAGGCTGAGGCACAAGAATCACTTGAACCCCGGAGGCGGAGGTTGCAGTGAGCCAA<br>GATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTTTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGGCCGGGAGCGGTGGCTCACGCCTGT<br>AATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATCAAGAGGTCAGGAGATCGAGACCATTCTGGCTAACATGGTGAAACCCTGTCTCTACTAAAAATAC<br>AAAAAAATTAGCCAGGTGTGGTGGCAGATGCCTGTAGTCCCAGCTACTTAGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAAGCAGAGCTTGCAGT<br>GAGCCGAGATCGTGCCACTGCATTCCAGCCTGGGCAACAGAGAGAGACTCTGTCTCAAAAAAAAAAAA</u></font>gaggctgaggcaggagaatggcgtgaacctgg<br>gaagcggagcttgcagtgagccgagatcgtgccactgcattccagcctgggcaacagagagagactctgtctcaaaaaaaaaaaagttgaaatttatcaa<br>ctgccttgttagtaggtattgataagactggtatcttttctcattttatctatttatgtaatgaattatattgagtttc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	122203475	122203476	1002081	0	-	1104685230111	GCCCAAGTAAATGAATGACCA	GCGTGCACTTTTCCACTGTAT	SINE	Alu	NCAI	gttcacttgtctggattacctacagtggacaatctacatctcttccactaatttccctttagaatccatattccatgcatataagtgacttgtaaaaatg<br>taaatctgtcatcttactctttgattaaaaatattatatggtttctcattacttttagaataaaacctagactccctaccacagcctggaaatacttcca<br>tggcctatgcctccatctccatcattctgggcacattggctctccctctgttctgaaaacacagcaattcattgtggccaacagacctttgcat<font color="green"><u>AGGGAA<br>GAACTCCCTGAGAAGGTAACATTGGAGCTTAGACTTGAATTTGAGAAGGAGCCACACTGACTTATATTTGGAGGAAGAGCTTTTCAGATAGATGGAGTAG<br></u></font><font color="red">C</font><font color="green"><u>AGGGAAGAACTCCCTGAGAAGGTAACATTGGAGCTTAGACTTGAATTTGAGAAGGAGCCACACTGACTTATATTTGGAGGAAGAGCTTTTCAGATAGAT<br>GGAGTAG</u></font>gctctaaagttcctgctttgacccgttattatacatgattttattcacctgaagttttgtcacaaatcattactatcagaaaatggtcattca<br>tttacttgggcccagaaccaggctttaatctatactacaatttattaaaggcaaagaaaatgaagtatttttttcttagtctattaactaacgtggtctt<br>actcatgagcctgtccccaaccacaccagctagtagcaaggaaaagtgaaaaagaaattctatgtagtatatttcactttaaaacttaattcaatccaag<br>g	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1164	1060	NA	intergenic
0	chr8	73257693	73257713	1002082	0	+	1104685425118	TCAAGTTTTTCCCCAACTCAG	TGTATTTCAAGTGTCCATTTCTCAA	SINE	Alu	NCAI	cagtgtgtgtcaacctatatttgcattgttttccaaaatgagtaaattttgttttattaagtttgttttaataaggaatatatgtacctctcacttttga<br>gttctttaaatcaagtttttccccaactcagagatttctagatattctctctctctctctctctctctctctctctctatatatatatatatatatatat<br>atatatttttttttttttttttttttttttttttttttgagacggagtctcgctctgtctcccaggctgaagtgcagtggtgcaatctcagctcactgca<br>agctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgctaccacgcccggctaattttttgt<font color="green"><u>NNNNN<br></u></font><font color="red">TAGTAGAGACGGGGTTTCACCGTGTTAGCTAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCG<br>TGAGCCACCGCGCCCGGCCGATTTTTTGTATTTTT</font><font color="green"><u>NNNNN</u></font>agacgaggtttcactgtgttagccgggatggtctcgatcttctgactttgtgatctgccc<br>acctcagccttcaaaaccttttaaatgatgtttacactagaggagttctgctcatacaatattgagaaatggacacttgaaatacaaaaatcaattttct<br>attttgcactattttcctacatgagtctaaaatatgtattatcttctctatgctaattagatgttagttagaatataagagaatacaattacaactcaag<br>ttttcttctattgccttatattttgtttttatagttttgtctatttaaagtcagaattttaaaaagacagagagaagcctgacaaataatcccttagtca<br>tacatcaattaaaagttctttttgttctgccgtca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	576	442	NA	intergenic
0	chr9	19269254	19269503	1002083	0	-	1104685686242	NA	NA	SINE	Alu	NCAI	ttcaccctctaggtattttaaaccattgtttctgggaatcttgttaaaaatagatttttttttcttctgaggcagggtcttttgctctgttgcccacgct<br>ggagtgctacagtggcacaatcggagccactcctgggctccagtgatcctcccacctcagccttctgagtagctaggactacatgtgcatgccaccacac<br>cttgctaattttttttttttttttgtcttgagaaggagtttcactctgttgcccagactggagcccagtggcacaatcttggctcactgcaacctccacc<br>tcctgggttcaagtgattctcctgcctcagcctcccaagtagcaggaactacaggtgctcgccaccatgcccaactaatttttgtatttttttag<font color="green"><u>NNNNN<br></u></font><font color="red">AAGGAGTTTCACTCTGTTGCCCAGACTGGAGCCCAGTGGCACAATCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCC<br>TCCCGAGTAGCAGGAACTACAGGTGCTCGCCACCATGCCCAACTAATTTTTGTATTTTTTTAGTAAAGA</font><font color="green"><u>NNNNN</u></font>tttcaccatgttggacaggctggtct<br>tgaactcctgaccacaagtgatcggcttgcctccgccccccaaagtgctgggattacaggcgtgaaccaccacaccgggcccttgctcatttttattttt<br>attttttgtgaactcctggcctcaagcaatcctcctcccacctcagcctcccaaagcgttgggattacaggtgtaagccaccacactggaccagaataca<br>gattgtgattcagtaggtctggaatagtgcctaagtttctgagtttctaacaagcttccaggtcttttggacaatactggtccatgggctacaatttgaa<br>tagttaggcccttaattatgttccccttcccttaaagtcaagcttctgggggggcagagtggagggggc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	128925246	128925247	1002084	0	-	1104685372002	NA	NA	SINE	Alu	NCAI	gaggcagagcttgcagtgagccgagattgcgccactgc<font color="green"><u>CAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCAACTCTACTAAAAATACAAAAA<br>AAATTAGCCGGGCATGGTGGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAACGGCATGAACCCGGGAGGCAGAGCTTGCAGTGAGC<br>CGAGATTGCGCCACTGCACTACAGCCTGGGTGACAGAGCAAGACTCCGTCTCAAAAAAAAAATAATAATAATGTAGACATGCATCAATAATTCAGAGGCT<br>AGGAGGCTCCCCAGAGAAACCATGAAGAATATCAACAATCCCCTGCCACAGGACTTAGCAGCTTTGGAAGGCATCGTCCAAGCAGCCACTCTGGAAAGAA<br>AGGTGCTTCTCTCAAGCAATCTGTACAAAGCTCCCTGTGAACACATCACATCTAGTCTGCCCAGGAAGACAAGGGATTCCCACCTCCTATTAAAAAAACA<br>GCCAAACAGGCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGGAGAGGGTGGATCACAAGGTCAGGAGATCGAGACCCTCCTGGC<br>TAACATGGTGAAACCGCGTCTCCACTAAAAATACAAAAAAAAATTAGCCGGTCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAAGAGGCTGAGGCAG<br>GAGAATGGCGTGAACCCGGGAAGCGGAGCTTACAGTGAGCCGAGACCGCGCCACTGCACTCCAGCCTGGGCAACTGAGCAAGACTCCATCTCTAAAAAAA<br></u></font><font color="red">AGGAGATCGAGACCCTCCTGGCTAACATGGTGAAACCGCGTCTCCACTAAAAATACAAAAAAAAATTAGCCGGTCGTGGTGGCGGGCGCCTGTAGTCCCA<br>GCTACTCAGAAGCTGAGGCAGAGAACGGCATGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGACTGCGCCACTGCACTCCAGCCTGGGTGACAGAGCA<br>AGACTCCGTCTCAAAAAAAA</font><font color="green"><u>CAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCAACTCTACTAAAAATACAAAAAAAATTAGCCGGGCATGGT<br>GGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAACGGCATGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCA<br>CTACAGCCTGGGTGACAGAGCAAGACTCCGTCTCAAAAAAAAAATAATAATAATGTAGACATGCATCAATAATTCAGAGGCTAGGAGGCTCCCCAGAGAA<br>ACCATGAAGAATATCAACAATCCCCTGCCACAGGACTTAGCAGCTTTGGAAGGCATCGTCCAAGCAGCCACTCTGGAAAGAAAGGTGCTTCTCTCAAGCA<br>ATCTGTACAAAGCTCCCTGTGAACACATCACATCTAGTCTGCCCAGGAAGACAAGGGATTCCCACCTCCTATTAAAAAAACAGCCAAACAGGCCAGGCGT<br>GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGGAGAGGGTGGATCACAAGGTCAGGAGATCGAGACCCTCCTGGCTAACATGGTGAAACCGCG<br>TCTCCACTAAAAATACAAAAAAAAATTAGCCGGTCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAAGAGGCTGAGGCAGGAGAATGGCGTGAACCCG<br>GGAAGCGGAGCTTACAGTGAGCCGAGACCGCGCCACTGCACTCCAGCCTGGGCAACTGAGCAAGACTCCATCTCTAAAAAAA</u></font>cactaaaaatacaaaaaa<br>aaattagccggtcgtggtgg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PVT1:NR:003367:1/9	
0	chrX	145144949	145144950	1002085	0	+	1104685543994	CCCTACAAAATTTCCCTCCAA	CGAGCGTTTTTGTGGTAGAAC	SINE	Alu	NCAI	atttatcttattccaaatagcacacgagactaaatgttcactcacagtagtgtatcttactataattt<font color="green"><u>TTTTTTTTTTTGAGACAGGGTCTCTCTGCTGC<br>CCAGGCTGGAGTGCAGTGTTGAAATCTCAGCTCACTGCAACCTCCTTCTCCTGGGTTCAAGCGATCCTCCCACCTCAGCCCCCCAGGTAGCTGGGACCAC<br>AGTCACACACCACCATGCCTGGCTAATTTTTTTGTTTGTTTTTTGTTTTTTGTTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGG<br>TGCAATCTCAGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACACACCACCATGCC<br></u></font><font color="red">GCATGGTGGTGTGTGACTGTGGTCCCAGCTACCTGGGGGGCTGAGGTGGGAGGATCGCTTGAACCCAGGAGAAGGAGGTTGCAGTGAGCTGAGATTTCAG<br>CACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAACAAAA</font><font color="green"><u>TTTTTTTTTTTGAGACAGGGTCTCTCTGCTGCCCAGGCTGGAGTGCAG<br>TGTTGAAATCTCAGCTCACTGCAACCTCCTTCTCCTGGGTTCAAGCGATCCTCCCACCTCAGCCCCCCAGGTAGCTGGGACCACAGTCACACACCACCAT<br>GCCTGGCTAATTTTTTTGTTTGTTTTTTGTTTTTTGTTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCAATCTCAGCTCAC<br>TGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACACACCACCATGCC</u></font>gaattgattgcctttg<br>tatttaggttgttagaagctctgtatatattctggatattaatactttggct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1585	1400	NA	intergenic
0	chr3	194837674	194837675	1002086	0	-		CTCTTGACACATCTGTTATATT	GCCTACATCTAGTATGTATA	SINE	Alu	AluYb8	tttaaatattactaatattaagacatataaagccaaatatcttcctttataacacatacagtaactcataaatataatgtacttatatttattaatattt<br>ataatgaactaaaatagtcaaataatattgcttaagacattacttggaacatgtaagattacataaaaaatataaatgcctacatctagtatgtatatat<br>gtgtatgtgtacatatatacacataatttttaggaagctaagctgcttctttttttgctaattggcaagttcactatcaatttttcacatacccgtggca<br>gatgatcttgcgtattataactggcatcataatcagagagaacatcaagaacttcagaatacatgtcaatcaaagatttctgt<font color="green"><u>AAAAATTTTAAAAAGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGTAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTTTAAAAAGTT</u></font>taattataaaacagtaaaagtaaagaaaaaaatataacagatgtgtcaagagaaaaaagtgataaatt<br>caaattgtttttccataatcattgtactgttttctcaaattacataaatacatcttcatcgtaaaaactaaaacggtacagattaaaagtccatttctca<br>ttcagtttatttagatacaatgatttaataaagtaaattaattcaggatttcctaacattctaattaaataagatggaaattattacttaatactgatga<br>gctaatactgaatgcaagaaaagaccattaacaccaaaaaggcaaaaaaaaggtggtcaggtaaccaactgacaatgaaattattctttgctaagtttga<br>ggcatgcatgagaga	Other	<UL><LI>Gallus GN, Cardaioli E, Rufa A, Da Pozzo P, Bianchi S, D'Eramo C, Collura M,Tumino M, Pavone L, Federico A. Alu-element insertion in an OPA1 intron sequence associated with autosomaldominant optic atrophy. Mol Vis. 2010 Feb 10;16:178-83.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=20157369">PMID:20157369</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	52	604	274	ADOA	intron:OPA1:NM:130837:9/31
0	chr6	78037493	78037494	2000001	0	+	Chinese1; RIP_L1_chr6_078_01	CTCATGACCTTTCTTCATGT	CTGCTTTTGTGAATGATGAG	LINE	L1	Ta-1	ataaacagattttagagtgtgtgtgaatgactaatagattttaatgcctttaatcaatatatcataggagagggaaattaattaattcagcctgatgcac<br>tcagtagttcagaagccaataaaaaatctaaatggagatatgcattatgccattgtaaatgcaaatatgaatttaaaaaattatagatttgagcccctta<br>cttctgccacagagctcatgacctttcttcttgttttctccgtctaaggcacaccaaccctctttcttatttgactgtgtcatactgttgtctctgcaca<br>gaactctgctgtctcttaacctagccaattccttctcacctttttagttccaactttcttgtttcttccaactactcacagtacaaaggcaaccccatta<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tgtgctctcatataattataaacttctcttcattacctcttattataaatgtaattatctaattatgtaaccatttgttt<br>aatctatctccacactgaaagctatatgctatgtgagagtgagcaggggtcatacctgcttcactatcccccgccctttttctcatcattcacaaaagca<br>gatcacaggattttgaacatataatgaacatataaagaaattaagaaatattaattaaataaatgaattaaggaaagaataaaacaaagagattatttgt<br>taccttggtacagctatgtttagttttcactgttactgctgtcattttgagatggaggggacttgagagtattttagaccttctatattatgttcagcga<br>gaggtctttcaatctttcat	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr3	102762298	102762299	2000002	0	+	Chinese2; RIP_L1_chr3_102_01	TATGCTTGGAACGTGATAAG	TCAGTCTCTTAGACAAGATC	LINE	L1	Ta-1	acatgatagtaatcagtctcttagacaagatctcgttttttaaaatcatttggaaaagactatgcctaccttcttttattttagtaaactatatacaata<br>taaacatttccattttagtcattttcaagtgtacagttcaatggcattaagtacattcacgttcttgtacaaccatcactactatccatctccagaactt<br>tttcatcatcccatactgaaaattcatacctattaaacagtaactgcccattcttccctttccccagcccctggtaaacactattctactttctttcttt<br>atgatttgactattctaggcacttcatataggtggacttatacaatatttgtccttttgtgcctggcttatctcagtgtataatgcctccaaagtttatc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>catgttgtaccatgtatcagaacttcattcctttttaagactgaataatattccattgtatgtacatgcaacatttttta<br>atctattcatctgttcatggatatttgggttgcttccaccttttggttattatcaataatgctacaatgacattagagtacaagtgtctgtttgtgtctc<br>tgctttcaatttctttgggtatattactaggagtagaatggctgcagaatatgttcattctgtgtttggttacaaatatatgtggaggctgaattggccc<br>caaaggccaccaatttacaaatgtgttttaatttcatttcacattaaactttccaaatgagctaggaggagacagaaacttaccgtggcttatcacgttc<br>caagcatagtgccaggtact	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr8	73950330	73956377	2000003	0	-	238346; Chinese3; LID3; RIP_L1_chr8_073_01;AC213218	TATTAACACCAAGTGGAAGG;NA	TAGAATTGGTACAGAACTGC;NA	LINE	L1	L1HS	tcccagcctaccaaaatgataacgctgggttttatttttggaaaaagtacttttcatcttgtaaaaatttaatggcctttcagtgacagggaagttctga<br>gtggttttcactggctcttttctggccgcagcagaaggtggatgctacggctaggacctccccctgcttgaagggacagccagggagaggaaacacgccc<br>tctgcattgtctgggtgctgctgcttcacagattgtgcctgtacaacattttttctcttcttccctctctgagctagaggcagggcagaggtagccagac<br>ctttagaaaagattgccaatattaacatctaacttctgatagtacttttctgtctacagatgtttgagtgccttaattcctttatctttt<font color="green"><u>AAGATTTGCA<br></u></font><font color="red">GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCG<br>GGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAA<br>GCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGA<br>CCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAG<br>ATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTTGAACTGGGTGGA<br>GCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTA<br>AGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCGTAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGACATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATTTGCA</u></font>atgagcagagatttccttccacttggtgttaatataaaatga<br>tcatacatctgatcattaatataagacttggaccagggcttctaaaggttgaatatgcatctgaatcacctgggggatcttgttaaaaggtagattctga<br>tcctgtgtttgtggagcgggctgccaggctgctatggctcccaggtggttctgatgttgctggctcatggacagcacctgcaggagcaagggagggttca<br>ggataacagtagaggagggtgagaaggagaagatgcaggttccctctttttgttctgagggtgtgtctgttctcttctcacccaggataatcatccatca<br>tccaagcctacgtccttgggaggaagcctccgctaccagcaaaggccc	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Sheen FM, Sherry ST, Risch GM, Robichaux M, Nasidze I, Stoneking M, Batzer MA,Swergold GD. Reading between the LINEs: human genomic variation induced by LINE-1retrotransposition. Genome Res. 2000 Oct;10(10):1496-508.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042149">PMID:11042149</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Retrotransposon display:L1 display; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/52;NA	NA;NA	NA;NA	NA;NA	intron:KCNB2:NM:004770:2/3;intron:KCNB2:NM:004770:2/3	
0	chr21	18439432	18439433	2000004	0	+	Chinese4; RIP_L1_chr21_018_01	GTATGTCAATTATACATGAC	AATGCCTATCAGGTCATCTT	LINE	L1	Ta-1	acatgaaaagccttaaagaaagcaggttatattcagaatcacattaacaaagtaaaggttcaaaacagtattatttttatataagaattacaactttgat<br>gctttgaaaataaattatttgtatgtcaattatacatgactaatttcaattttaagttgttattctttgtagtaacaaatctagaatattaatctttacc<br>ttgttaaaagcctgcttttatttactacaaatacattgtgtagtaaacaagatgttcaagtcagtaaagcagaacacttcaacatctctgctcattagaa<br>agtggcatttgggccgggcgcggtggctcaggcctgtaatcccagcactttgggaggccgagactggcggatcatgaggtcaggagatcgagaccatcct<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ggctaacaaggtgaaacccccgtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcgcctgtagtcccag<br>ctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagctggcagtgagccaagatcgcgccactgcactccagcctaggggacgagtg<br>agactacctttcaaaaaaaaaaaaaaaaaaaaaagcggcattcaatatgatattgaattcatctttaacctatatgtgaaaagatgacctgataggcatt<br>aaaaagttgttttttctgaatgcttgcttatatagcatagaatggagggtgggctgttaaaatgaggcaataacctgtttcattcggggtcaatgtgttc<br>aagaaagaaagcttgatatc	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr6	85374878	85380939	2000005	0	+	L1HS222; Chinese5; 239250; RIP_L1_chr6_085_01;AC226594	TTTGTCAGGTAAGCTAGGTT;NA	TATTTGCCTACATTCATGGC;NA	LINE	L1	L1HS	taaagccaatactttagaaatgatatttgcctacattcatggcacaatgactttaaaatggaaggaaacacaagcatttatatcaacagctatagatggc<br>tattcatattctgaagagaaaaaaagagaaaaactgtaattgtagatactataagtcttaatatcaaataaaagccctggaattcagcattgtctttgta<br>tcctatatactattgtcaatgtattgagccaggaactaagattcatgagtctgatgaattacatttaatatctaaggcttaaatttaataaatttttcca<br>agagcacttaatagtttatgagataactgatgattatataagtaagatactgtgcttcactcttctggagataagaattatgttg<font color="green"><u>AGAAATGTGAGGGGA<br></u></font><font color="red">GAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCTACGCAGAAGATGGGTGATTTCTGCATTTCCATCTGAGGTACCG<br>GGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAA<br>GCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGA<br>CCGGCTTAAGAAACGGTGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAG<br>ATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCTGGAAGCTCGAACTGGGTGGA<br>GCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCCGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTA<br>AGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTTGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGAC<br>CCCTGACCCCTGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCC<br>TGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAA<br>AGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAAGAACGCAGTTCCTCACCAGCAACAGAACAAAG<br>CTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTT<br>GAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGAAGGAGCTGAAAACCAAGGCTCGAGAAC<br>TACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGTGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCAAGAAGGGAA<br>GTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGT<br>GATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAA<br>TACAGAGAACACCATAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGC<br>AGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAACTGAAGGAGAAATAAAATACTTTATAGACA<br>AGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCA<br>AAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGG<br>GGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGGACTTAGACTCCCACAC<br>ATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAACGATACCCAGGAATTGAACTCAGCTCTGCAC<br>CAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACA<br>TACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAGATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAA<br>AAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTC<br>TTTGAAGCCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGA<br>GAAAGCAGGAAAGATCTAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAACAAACACATTCAAAAGCTAGCAGAAGGCAAGAAAT<br>AACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAGAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATT<br>GATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAA<br>TACAAACTACCATCAGAGAGTACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAG<br>ACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCA<br>GATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTA<br>ACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGC<br>AAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGCCTGG<br>TTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTCTCTCAATAGATGCAGAAAAAGCCTTTGACA<br>AAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATCTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAA<br>TATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAA<br>GTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAGTTGTCCCTGTTTGCAGACGACATGATTGTTT<br>ATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGC<br>ATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTT<br>ACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCCTGGG<br>TAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATT<br>GGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGACCAAAGCTGGAGGCATCACACTACCT<br>GACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAA<br>TAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTG<br>GCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACC<br>ATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACA<br>AAATTGACAAATGGGATCTAATTAAACTAAAGAGCTACTGCACAGCTAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTT<br>CGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAACCCCATCAAAAAGTGGGTGAAGG<br>ACATGAACAGACACTTCTCAAAAGAACACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAAC<br>CACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTAA<br>CACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCC<br>CATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTG<br>GAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATG<br>TCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGA<br>ATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATA<br>CCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTT<br>AGAGTATAATAAAAAAAAAAAAAAAAAAAAAGAAATGTTTTTTTTAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATGTCAGGGGA</u></font>aagttaatattttatttcaaatt<br>tccttcttaatgactgagacattacaagaggagaaagaattgaaagggaaatatttacttataaaaccaaagaatttaaaaattaatcagaaaacactac<br>aaatatggtttcatttattcttctcctcctcttcttcctctttcttctccattttagaattcttccacagttaatagaaagagattagaaaataaccttc<br>cttaaattaagatatctgtacataaaaacctagcttacctgacaaacttcctgaagaatttggcaaagctcttggggtagatgtggatgttttctcctgg<br>tattcctcaaataccagcagagaaggtacactagttcctcacctaatccattatttcaggtc	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	6195;NA	118;NA	NA;NA	intergenic;intergenic	
0	chr9	9226253	9226254	2000006	0	+	Chinese6; RIP_L1_chr9_009_01	GACCACAAATGAATTGACAC	TAGATTCAGTAACTCTGGTG	LINE	L1	Ta-1	ctttttttttgttgttgttgtttggccatgatattctaaacatggaaagttaccttgcatgtctccatgaacttattagtctgagtcaattctaaacaat<br>aaggggttatatttaaaaagagcaaaattggccaggtgcggtgtctcatgcctgtaatcccagcactttgggaggctgaggcaggtggatcacctgaggt<br>caggagttcaagaccagcctggccaacatggtgaaaccctgcctctaccaaaaatacaaaaaagtagctgggcacctgtaaccccagctacccaggaggc<br>tgaggcaggagaattgcttgaatccaggaggtggaggctgcagtgagccgagactgtgccattgcactccagcctgggcaacaagaacaaaaccccatcc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>caaaataaataaataaatacacaaataaggaacaaaattatttgagagagctctcatcccaaacaactatatttctgata<br>cctatgggaaaatcaaatttaaaaatggacacaaaggagtataaaagctagccttagatactcctttaataagattaaaaagcagaaattagattagaaa<br>caaagttaaaattcaaatccacccataaattctcctctctgccctcttatactctctcaacttcctgggagtccctgacactccagatcttttgcatttc<br>tggtccccagatttaaaattccctttttctaaatctagctccatttccttagtacattcctttagctaaagaatgaattatttgtttgaattcatttgaa<br>ttatgacttttggttttggg	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/45	NA	NA	NA	intron:PTPRD:NM:130392:8/44	
0	chr5	77383437	77383438	2000007	0	-	Chinese7; RIP_L1_chr5_077_01	CGAGTCTGTGCTTATATGTA	ATCCACATTTAGTTACCCAG	LINE	L1	Ta-1	ttaccaaaataagaggtgagaaagtcttgtgtgctttataatgtatagtgattactaaaataaaatatgagaaattatcataaatttgtatatcaaaatt<br>tatatacataaggaagaagttatctttagtattaaaaaccatttatttgaagtaatatttgctggaagattcaaatatatttcttcgagtctgtgcttat<br>atgtaagagttaaccaaatttgccgtttacttttttaaatcctattctaggtcaatactaggttaatgctagcctcaatgaaatggattgaaggtaaaat<br>caagacccactttctacagtttataggataaatgagacaatactgtgactttctgcattacaaatcttatcaattgagacatacattggttttaaaagta<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ctaattttaaagatgaagctgtgcctctgtttatagctattttcttacctcgtcatttttataaattatatatcaaaata<br>gatactgatgtaaagtaagccaaacaaaactagatacaaagagcattttatatactgcagattttcatatctttgaaattcaaaaacagaatggattgat<br>aatacttaatgactgggtaactaaatgtggattaaagcataaaaggctgggaaacattgttttcataaagctttacgtggaaatgtcatctttgaatagt<br>aatgtggatgctgaacaaggcttattccaaggcacttacttgctattccatgttttatttttcgaatctcattttaaattttataattcaatcattttga<br>acagctatgttcaaaagaag	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intron:AP3B1:NM:003664:22/27	
0	chr2	23044768	23044769	2000008	0	+	Chinese8; RIP_L1_chr2_023_01	CTTATGCTCTTACTAGTGTC	TCTGATGTGACTCTTGAATC	LINE	L1	Ta-1	aatgaaaaatgcttttcactacaaattggtaagaatcacaagatggcaacagcagagcattaaaccaagtgtggggtcctgtgcaattgcatgagtggtg<br>tattagtccattctccctctgctattaggacatacctgagactgggtaatttataaaggaaagaactttaattgactcacagttccgcatggctagggag<br>gcctcatggaacttacaatcatggtgaaagggaaagccaatatgtccttcttcacacggtggcagcaaggagaagtgcagattgaacatgggaaaaaacc<br>ccccgataaaactatcagatctcatgagaactcactcactatcacaagaacagcatggaggtaaccacccccatgatgcaattacttcccagcaggttcc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>taccacaatacatggggattacgggaactacaattcaagatgagatttgggcagggacacagccaaccacatcagacggt<br>gtgctcagggaagcctaactgcctggcttcttacttccctcatctttgttccagtgtcaccatatattagagaagtcattcttctcaccattctatgtgg<br>gatagttactcctgtggcactctttgtttctttcccttgttttgcagttctccttagcacttgccaccagctaatctactctgcactaaatcatttactt<br>ctttctttggtgtctatctcctcctgtggaaatataagggccatacatgctttatcacccagggtatagaatatgcccaccacagagtagccactcaaat<br>atttgctgattgaatgaaca	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr12	12824628	12824629	2000009	0	-	Chinese9; RIP_L1_chr12_012_01	CACTAGTGATTAAGGATGTG	AATTCATAGTGCACCAAGTG	LINE	L1	Ta-1	acttgagcccaggaatacaataccagcctgggcaacatggcaaaaccccatctctacaaaaactacaaaaattagctgtgtgtggtggcctgtgcctgca<br>gtcccagctactgggaaggtggaggtgggaggatcgcttgagccccggaggcagaggttgcagtgagccaagattgctccactgcactccagcctgggtg<br>gcagagccagactctgtatcaaaataaataaataaataaaattgaaataaaaaataaaattgagacaacttgtaaatgtgaggtttagtccaaaggtctt<br>gcagactttcctttgtcatctgttctaatatgtacattcaccaaaataaaaataaattcggccaggcacagtggcttatgcctgtaatcccagcacttcg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ggaggctgaggcaggcgcctcggtggtgtgtgcctgtagtcccagctacttggtacttgggaggctaagctgggaggatg<br>gtttgagcctgggaggtgaggctgcagtgagccgagatcacaccactgcactccagcctgggcaatagagccagacattgtctcaaaaaaaaaaaaagca<br>aattaaaataataacacatattcacctgaggatttttgcccatgatttctttgaatttccccagaatgtaagtgctctagaacatagtcaagctctcata<br>gttgcttgttgaatttaactaaagaaaaatgctttgttcacttaaagaaatatcattattttataacaattttataagaatttaacataaaattttctct<br>tggactatacagcttggtat	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	52/52	NA	NA	NA	intron:APOLD1:NM:001130415:1/2	
0	chr6	78805907	78805908	2000010	0	+	Chinese10; RIP_L1_chr6_078_02	TCTGTGCATGTCAGTAAATG	GGCATAAAGTAAGCTACATC	LINE	L1	Ta-1	attaaagtcagaaaaacatgatagttaaaactacaatacattattagcagaattgagttaattttggaagctctcattaatgagatgacaattgtggcat<br>aaagtaagctacatctgattagaagtatataattacatattcgatattaactttaaagaaggaaataagaataatttttctcttatttcctctttaatga<br>acaagacattaaagaattgaagacataaacaatattttagtagatttaaatgaaagagataaataatgagcaaagaaaaatttatattagagtgaaaatg<br>tagggcttgcataaaagatcaaatgtaggaaaattaaagactgcactaaagcatattaaaaagattgtcactttcagaacaatcttcaattatcagtcat<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>aaaaacagaaatgcttacgtttctgaaagaaatatttatcatacaattaattctcactttgatttgagagacaagttttc<br>tgagatttaaattttcctaattttttcttttattattaatcaatgattcattcagtcattcattcattcatccattcaacaattatgtatccagggccaa<br>tcatggattaaagcgaaccgacttaagagttttaatatattaataatgtctcataaagatactttgaaaattggctgcatagtatttttattaaggtaaa<br>tttacatttactgacatgcacagatcttatgtttttaatctattgagatattttatacctcagttataataaggcataatttgaatacattaaaattcat<br>ctacctttttggaagtaaag	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr4	94778478	94784513	2000011	0	-	238931; L1HS418; Chinese11; RIP_L1_chr4_094_01;AC216113	GTCTAACATAAGCTCTAACG;NA	AGCACCAAGAATATAAGAGG;NA	LINE	L1	L1HS	tgaatgattttgagtcactttactgaatacattctggttaagaagtaatttgtttggcaaatttctgcacttgctaaaaacatgcagaaaagaggaaatt<br>aatactagtaaaattcatgctgattagcaccaagaatataagaggctccctagaagggccacgatggtttttttagggagtactaaagggatcttggttc<br>attaatggaaaatacacagaaaattgagaaaaatcatcagaacaaaaattttactatcaaaaccactattttggataaagattaaaaaccttacagagta<br>gaaatctcacgattttttttagcgtgccagttcctttctgtcatgccatggacattgctcatggaacattggtaaaaatatcatt<font color="green"><u>AAGATGCAAGTTTTA<br></u></font><font color="red">GTGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCGGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACTAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCTGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCAAGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGTGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGCTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACGAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGGAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACATCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCAAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGTGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATGCCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGACAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCGCTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAACCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGATATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGTGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATTAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATGCAAGTTTTA</u></font>aatatgttttcttaggcagcaacatacaaaataaaaacatgttgatttt<br>gatcattttcattagttactaacatttaaaaaataaagagctttataaaatgacagaagcagaatggattattatgaaaaaagtaaatgaacacattgag<br>gtacatatttctctatttgaaattggtattaaaacagagaactacgttcacaaagacagaaatcgttagagcttatgttagacttacctgggctatatag<br>aataatgactcttattccatataaaaattcttatatttttatcttagtaataattcatgtctagaagtatcagattctgtttcatattagtaaacgttta<br>acatgtgagtagactgtctgaccaattatgatgtta	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	6380;NA	328;NA	NA;NA	intron:GRID2:NM:001510:14/16;intron:GRID2:NM:001510:14/16	
0	chr2	144334996	144341035	2000012	0	+	Chinese12; RIP_L1_chr2_144_01	CCCTGTTCTACAACATTACT	TTAGACTCTGGAACTCAAAG	LINE	L1	L1HS	tttctcatagagagaaacagctgagaaacctacagaccatcaaattatgactccagtgtttcattacaagcaattagactctggaactcaaaggtacaac<br>caaaatgctcagtgtaatttggttaataccatttaagagctgggccacaggtgcttaaatctacagaacagaaaaattctagcgactatatagggtccta<br>ttactttatgggtaattacttgtatagctagagcctcaaaggtggactcaggagaaaatacatgtgaagtgaggagaaagactgaaaattacacatattc<br>attccacaagcaatgactgtgaatggctaccctgtgtcaggcacagttcctctcaaggaactcaaaccccaacaggaaagatgggc<font color="green"><u>ATAAATTCTTTCCT<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTACTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCAAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTACAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACCGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGTCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGACTTTGACGAGCTAAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGTGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATGGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATCATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGCCCTAATAGACATCTACAGAACTTTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAACAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATTGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACCAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGTTT<br>GTTTATCTAGAAAACCCCACTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AGGCATTCTTATACACCAATAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACACAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTATCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACATTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTAGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATATAAAAAAAAAAATAAAATAAA</font><font color="green"><u>ATAAATTCTTTCCT</u></font>tcagcaaacactgaatagtgctgtaagaaagaaatatctatatgac<br>ctgttagtaatgttgtagaacagagtgcttatgtattcaaacacttaggaagttatcactaataaatgacattgatctgtgtatagaattaaaaggaagt<br>ttccatgtggaaaagggcatcacctgacaggaaagacagccaggaaaggcaagttgaggtgagagcccttaaaaattatggaatttggacatggtttcta<br>gatactaagaatcatggagggtatttgagggtcaccaggcagggtcatttctgagaaacctcttctaggaagcacatccaaaaacggtaggcaaaatata<br>aaagatgccactttgcaatgcctagatgagcttctgtaat	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr14	47187693	47187694	2000013	0	+	Chinese13; RIP_L1_chr14_047_01	CTCAAAGAACGATCGTAATC	GTTAATGTGATAGCTGTAGG	LINE	L1	Ta-1	tagtatattctcagtaaatggtattattatgggcatgattataaattcccttatctttccaatgacagtatatgccatttgaagacaaaaaccattttta<br>tagttctttgagtgtttccctcaatgactagaaagtagcctgctatatacataatgtctaataatgatttgctcaaagaacgatcgtaatcaaaaataaa<br>tagagggcaataagtgctaaaccataaggcactgaaagataagcacaagcaaagttcagctgcaaagaatatctgagtgggctggtatagtcagagaaag<br>atctatggcagacaggggaccaggaatgggaagtaaaagcctttcataggtagcataagactggataaataaaatcacccaatgttctctgcagaataca<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tttcagaagcatattttgacctaattgaagtgttcttaaaataaagttcataagaaagtgttcataaaatcacttaactt<br>tggaatttcttcatgttgtgttcaacacttctttcttaaaccatatttaaacagatcttctttagaatacaaacagaaatggagaagagataatacattt<br>ttacctaaaattatattaacatcaattgtacctacagctatcacattaacacttaaaaatgatggtttatatatgtattctgacctcatgtctagtacct<br>agaggaaataattatttagtaatatcaatacatttttaaatgtctaaaattcatcatataaaatatttgtatactcattaaatgttttaattattatttc<br>catagtcatagtgattaaga	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intron:MDGA2:NM:001113498:1/17	
0	chr4	104092569	104095056	2000014	0	-	Chinese14; RIP_L1_chr4_104_01	GAACACACTTAGTACATGCT	ACTTGTTTAGACTAACCTAC	LINE	L1	L1HS	ctctgattaacaattttcattagtaatgtgttacacaaccagtacttgtttagactaacctacattttaccaatttctttgcacattgttccttcctttt<br>tggttctatgtcatatttctaaagcatatctttcagtagatttttccctggtaaaaaatggcatatgttcttaaatgtatttgtttgacaatatctttca<br>tttgtcttttgtttgagtgacagttaactggctacagaattcaacattgaatgatttctttatctctgtactttgaagactttatttatcttccatcttc<br>tattgttgctgataagtactgagaatctgctctattgtttattcgattatgattaatctctttttctctgtctagattcttt<font color="green"><u>AAGATTTTATTTTTGCCT<br></u></font><font color="red">GAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACAT<br>CAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGA<br>GCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTA<br>TTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAAC<br>CAGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATT<br>CAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGA<br>TAAGCAACTTCAGCAAAGTCTCAGGATACGAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGG<br>TGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTG<br>CTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAA<br>TTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCG<br>CATTGCCAAGTCAATCCTAAGCCAAAAGAATAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGG<br>TACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGA<br>AAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACC<br>TTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATA<br>GGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAG<br>CAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGACTAATATCCAGAATCTACAA<br>TGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCC<br>AAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCGATC<br>ATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGA<br>AGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTG<br>CTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAG<br>AAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTC<br>TCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATAT<br>CACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAG<br>CATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATTTTATTT<br>TTGCCT</u></font>ttggtagtctatagtttctcaacattttatctaagtatctatttttacttaatcctgattagaactcatttgacttcctgtgtccaaatcaata<br>aaaaccctaatcaattctgtaaagtttgaagccagttttcttctcaaatattatatcttcttcattctttcaattatgtttctgaaactactattagttg<br>tgttttagatcttttccataatctaaatctctcattttccacctcatttttttgtgtgtgtgtgctatgctcttaagtaatttcctcatatctactactt<br>tgctgtgttctctcttcagccatgtctagactgctgtttgggtacttagtggttttttttttagttgagtaaattttacagttttttc	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intron:NHEDC1:NM:001100874:3/12	
0	chr3	24962867	24962868	2000015	0	-	Chinese15; RIP_L1_chr3_024_01	TGTTCTCCTTGACACCTTAT	TCAGCATGTCTTTTCAATGG	LINE	L1	Ta-1	cacctcagtttcttgggagctgggactacaggtgtaccacatctggctaagttttatctattttttgtaaagacaggatctcactatgttgcctaagctg<br>gtctctaattcctgggctcaagtaatcctcctgcctcagcctcccaaagtgccaggattacctatgtgagccaccacacccgaccaagccttgctaatat<br>taatgtatcattttttagaactctaggttttttaagcacacattatgttatagtagaaacatctgcattagaaataacttggcaaccatatttgcaagac<br>attttgcaaagaaagaacagcactcttcattaaatgctgtctccaacttcccaccaccttctaatttctaaaggcaatgaatttagttaaaaaattatca<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ctctgaactggctcgggtttcaaaaaaattaactcaactctggaaaaatactgtatttgtccatcaactatacttgaatt<br>tcagtgatttctttttttttttttttttgagatggagtctcattttgtcccccaggctggagtgcagtggtgtgacctcggctcactgcaagctctgcct<br>ccaggttcacgccattctccttcctcagtctcccgagtagctgggactacaggcagctgccaccacacctggctgattttctgtatttttagtagagaca<br>gggtttcaccgtgttagccaggatgatctcgatctcctgacctcgtgatctgcctgcctcggcctcccaaagtgctgcgattacaggcgtgagccaccgc<br>gcctggccagcgattcttaa	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr11	60608321	60610492	2000016	0	+	Database16; L1HS26; AC003689; RIP_L1_chr11_060_01	AGTGTGTTATAAATGTAACT	TGTGATACATTTAAAGTTCA	LINE	L1	L1HS	cctcgaggccactctacaattgggaaagcacctgcctctgtaattgtggctttgtgtgtttcacaccctccttggtctccagctctctgagaaaaagtcc<br>tgtttactctgtgatatgcaggtatctgcgggtggcagcagagcttcaagcttaaaagatgtagactttgtatgaccaaatgcctgtcgtggttgaatgt<br>ggaaataaatggtggtacagtcacacaacagaatactatacagcaatgaaaaagaacaagctcctatacacaataacatggatgaatcgtccaagaataa<br>tgagtgaaaaaaattgaaacacaaaaggtataaactttgtgatacatttaaagttcaaagaaaagggccaggcac<font color="green"><u>GGTGGCTCACACCTGTAATCCTAGC<br></u></font><font color="red">ACTTTGGGAGGCTGAGGCAGATGGAGCACTTGAGGCTAGGAGTTCAAGACCGGCCTAGCCAACAAGACGAAACCCCGTCTCTACTAAAAAAATAAAAATT<br>AGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAA<br>AATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAG<br>AGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGA<br>GAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCC<br>ATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGA<br>ACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGT<br>AACCAAAAGAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATC<br>TTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGG<br>ATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCAT<br>TACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTA<br>AAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAA<br>TATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGA<br>AGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCA<br>GTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAG<br>TTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGA<br>GTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATG<br>ATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAAT<br>TGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACA<br>CAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTG<br>GGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAA<br>AAAAAAAGAATAAAATCTAAATTTCTTAAAAAAAAAAAAAATAAAAAAAATAAAAAATAAAAATTAGCCAGACGT</font><font color="green"><u>GGTGGTGCACACCTGTAATCCCAGC<br></u></font>tgctcgggaggctgatgcaggagactcatttgaacctgggaggcggaagctgcagtgagccaagatggcaccactgcactccagcctgggtgacagactc<br>ttgtctcaaaataataaataaataaaataaagttcaaagaaaaggcaaagccaatctatgatgacagaagtcaggacagtggatacttgggtagggagca<br>gtgcggggcagtggggagcctcccaggtgctggttacaccagcacgtgcagtgtgtgaagttacatttataacacactgcatgtactgtgctgtgtgtat<br>cccatatataagtaaaaagttgttgttgttttaaattaagcatctgggttccagcccagctttaccacctggatg	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr7	113203413	113209443	2000017	0	-	AC002385; Database17; RIP_L1_chr7_113_01;AC206740	TGCCTGGTAAATTTGTATTC;NA	TATCTTAATGTCTATAAGAA;NA	LINE	L1	L1HS	gagaatctaccttttcctgagattgacatcctgacatgatgatgaaaataatcaagttaaaggaatttgacatgccaccaatcctttcttaatttattta<br>ggattccagtctgtatcaggaattatgccaggtatttgatatttagagttaaataaagtgaattttctaatctcaaatatcttaatgtctataagaagaa<br>cagacatgtgaataatatatatctgtcatatatttataacacctagtcagaacctggcatactgagggcaatttaatagtaatagtaatagtacccctac<br>tggtagtaataataataatgtctgatattgaaagtttattaaataccaggaatttttttgaggaccttattcatttattgctctt<font color="green"><u>AAAAATGCCATTATG<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACAAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGAG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAACCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAACTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGACCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCTGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATGTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ACTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACGCTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATGTAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGCCATTATG</u></font>tagatgcatgatttgtccattttctttatgacaaaactaaagctcagatggtca<br>ttgtgtcaaggtgttaacttggtaccatggccagctctatctggtgataccaaggaaaacttcacagatgtgctgaactctgaagaaagaatacaaattt<br>accaggcagaaaaatcaaggcagtggataggcaaagggaacagccagtgtaaagaggcaggagagataaaaaggagtagaaatctgagtatttcagtcaa<br>ctgcaactttagagtctagacagagaacgaagatgaatttgcagaagcaggtaggtggtcaatcaaggaaggaagatgttacttgcaatagtaagggttt<br>aaatgtaacaaagaagagggataaggtgtag	UCSC;UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr17	65966693	65972771	2000018	0	+	Database18; AC005939; RIP_L1_chr17_065_01	AGATATACATTTAGTCATGC	CAAGATAACCACTCACATTA	LINE	L1	L1HS	tggtggaaggcaaggaggagcaagtcacatcttacatggatggtggcaggcaaaataggagcttgtgaagagaaactcccatttttaaaaccatcagatt<br>tcatgagacccattcaccatcacgagaacagcatgggaaagacctgcccccatgattcaatcacctttcactggatccctcccacaccacgtgggaatta<br>tggaagctacaagatgagatttgggtggggacacagagccaagccatatcactactgcaacttatttttactttatcaatgttttaatttttaaagcttt<br>ttcactcttttgtaataacgcttagcttaaaacacaaacacatggtcagctgtacaaaaatattttctttccatatattgttattctac<font color="green"><u>AAGATTTTGTG<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCTCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCAGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCAAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAACT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTAGCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAGTTTTAAATTAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATTTTGTG</u></font>tactatgaac<br>tttttttatttttttttacttctcaaagttttttgtttaaaactaagatacaaatacacacattagcctaagtctacacagtgtcagaatcatcaatatc<br>actgtctttcactgtcacatcttgtgccactggaagatcttttggaacaataacgtgcatggagctgtcatctcctataataacaatgccttcttctgga<br>acatcccccgaaggatctccctgaggctgttttacagttaacttttttttctaataagtagagggagtatactctaaaataatgattgaaagtttaatat<br>agtaaatacataaaccagtaacatagttgtttatgatcattatcaagtattatgtactgtagatagttgtatgtgctgt	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr7	73851531	73851532	2000019	0	+	L1HS44; Database19; AC004883; RIP_L1_chr7_073_01	ATATGCCTTTCTGTGCTCAT	AAAGACACCTTTGATGAGGT	LINE	L1	L1HS	agagtgcctggtttgtggtgataatgactcattgcagcctggaactccctgggctcaggtgatcctcccacttcagctcccagttgctgggactacaggc<br>atgcaccacaccgagctatcttttctttctttctttcttttctttttttctttttcttttttttttttttttgtagagctggagtcttaccttgttgccc<br>aggctggtctgaaaccccaggctcaagcgatccacccgccttggcctcccaaagtgctgggattacaggagccaccgtgccaggcctcatccttattttc<br>aaaagtacatgagccaaacaaaagacacctttgatgaggttcagcatgtagctgtgcttgttatgtccagtttaaacaggaattattt<font color="green"><u>GATAATATGTTT<br></u></font><font color="red">AATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCT<br>AGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTT<br>TCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAG<br>ATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTA<br>GCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCATA<br>TGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCAT<br>TTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTGTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTG<br>AAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACA<br>ACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACC<br>CCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCAT<br>CAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGC<br>GGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAA<br>TACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACT<br>ATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCC<br>ATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCA<br>TATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGA<br>GGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATG<br>TGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GA<br>TAATATGTTT</u></font>gcattttctttttagagacagggtcttgttctgtcacccaggctggagtgtagtattgcaattatggttctctgctgtctcaaactcctg<br>agtttaagtgatcctcctgctttagcctgccaagtagctggggctacaggtgtgagccactgtttccagctaatttttaaattttttgtagagatggggt<br>cttgctatgttgcccaggctggtctcaaactcctggcctcaagcaatcctcttgccttggcctccaaaagtcctgggattataggtgtgagcattttaat<br>atattttctcatttgattcccaagaaaactttgtaataacagagatgggaatgagcacagaaaggcatatgatttttacctactgtgagtctcaaatg	Other	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	57	2288	478	NA	intron:GTF2IRD2:NM:173537:15/16	
0	chrX	118453450	118459702	2000020	0	-	Database20; AC004000; RIP_L1_chrX_118_01	ACAAAGAGTGACCCAAGAT	TCTTCAGTGGATGTCTTACT	LINE	L1	L1HS	tgtattattattattattttttgagatggagtctcgctctgtcacccaggctggagtgcagcggcgcaatctcggctcattgcaacctccgtctcccggg<br>ttcaagcgattctcctgcctcagcttcctgagtagctgggattacaggtgtgcaccaccaggcctggctaatttttttgtatgttagtacagacggggtt<br>tcaccatgttgcccagctggtcttgaactcctgacttcatgtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcct<br>ggccacgtacagtgatttttaaaaatcagatccttttactcacctgcttaaaacattttaatgactttacatcacactt<font color="green"><u>AGAATAAAATCTAAATTTCTT<br></u></font><font color="red">GGTGCTTCCCAGGAAGATCTGGGAAGCAGGATCTGGGCCCGGTGGAGCAGGTACTGTAAAATCTTAATCACTGTAAAATCCAAATCAACCACAAAAATGA<br>GTACGTGCAAATAATTCACACCAGGAAAATTCAGTAAGCTTTTAAAAAGACACAGATGATCCCTTTTAAAACAAAGCATTCTTATCCTCAAAAACTGAGA<br>TGAAAAAGAAAACAAAGCGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGC<br>ATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAG<br>GCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCC<br>GAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACGACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATT<br>GCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGG<br>GAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGC<br>AGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGTCTGCCT<br>CCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACA<br>GACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCA<br>AAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCT<br>CACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCA<br>AACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTG<br>AAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCACCAATGGAAGATGAAATGAATG<br>AAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATGTGGGACTATGTGAAAAGACCAAATCTACGTCT<br>GATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCC<br>AACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGA<br>AGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGC<br>CAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAA<br>ATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACA<br>ACTGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCAT<br>AATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGT<br>CAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATG<br>GAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGT<br>AAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAA<br>AGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGG<br>AATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACAC<br>CTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATC<br>AAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGA<br>AGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTAT<br>AGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAA<br>GCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTT<br>TTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATAT<br>CACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTC<br>GACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAA<br>CCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGA<br>AAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATGCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATA<br>TCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCA<br>TCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGA<br>TGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATC<br>TATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCC<br>TATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTT<br>TGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATC<br>AATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAA<br>AATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATGGAAGAAC<br>ATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGA<br>CTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGG<br>AGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGA<br>ACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAAT<br>GGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAA<br>CGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCA<br>ATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAA<br>CATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCC<br>CATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATC<br>AGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTG<br>GAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAAT<br>ACCATTTGACCTAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTA<br>TTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCA<br>TAAAAAATTATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCAT<br>ATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAG<br>GGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGT<br>GCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAATAAAATCTAAATTTCTT</u></font>actggagcctacaagccatagtacta<br>atatggtggcaaagtttaacaactggttctctgggggaaaataaaaaagggctgaattgtagcatttaccaatttcaacagcatcagtactcccactatg<br>gctgatttcaggctgccaaatgcgaagtcgaccagctcccaaatttcctgaaatttaacagtcagttctcctgagccagtaggaagtggttccagcatgc<br>tcgtaggctacaaggtcctatatgatctgctctgcccaccgatttttttctttttttaaaaaaatattttttaagttgggtgcagtggctcacgcctgta<br>atcccagcattttgggaggccgaggtgggcagataacttgaggttgggagttt	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intron:SLC25A43:NM:145305:3/5	
0	chr5	165780165	165781150	2000021	0	+	Database23; RIP_L1_chr5_165_01	ACAGACAAATGGATAGATGC	TGGAATACGTTCAGTCATAG	LINE	L1	L1HS	ggaggaaaatcagtgctttaatcaagatcaactcaaacataatatttattgttattgcatgtaagtgtgtgaaaaatgaactgggtgatagtgccatgtc<br>agaactattttcctcaacattaccgctaatcatctaaacttcattaggaaccaactccggtacaggtgggaaaacatttagttgtgttctgctctgctga<br>gcccattcaaaatagcttttctgcctcactccagcggtttcatgaagatggggattgatctgtgaatctcttgcatggtatgtttgaaatttttatatga<br>gtataaagtgtcaggtggtgtcaaatgctctaattaccaggcagcagagggagactcagttgacaaggagttaccatttttat<font color="green"><u>AAGATACGACTCTGCTT<br></u></font><font color="red">GAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCGCTCTGATGGTGAAC<br>TCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAA<br>CACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAA<br>AGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGT<br>GTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAA<br>GACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGT<br>GGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAA<br>ACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAGCAATGAGATCACATGGACACAGGAAGGGGAATATCACACTC<br>TGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCA<br>CATGTATACATATGTAACTAACCCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATACGACTCTGCTT</u></font>t<br>gatttttatggacagcaggtcctgttctttattgcatggtgaagtcaaagaagctagtgtggagtccttgatttaaatattatgaatggtaaatgaaagc<br>aaactctagcacatgctgattctgctaaaagcactcagttcattgaaccttccttgatttctttcctttttcatattcttctctcaaccttcaggattcc<br>actttccttaataaaatgtaaaggaagcatctatccatttgtctgttcaatgggctacatcctcttctagccactaacaaagtcaatctgttctcctcca<br>gcacccaggtacacattccaaacagtattggtccatgagccaagagtgaaagaaatgcctcatgggaccatcgtgcatgagg	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr7	141266936	141272983	2000022	0	-	Database24; Druze55; 238448; AC073647; RIP_L1_chr7_141_01	ACTTGCTCATCTTTGAACTG	AGATCAGCTGAAACTCTAAG	LINE	L1	L1HS	gtgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccacaaaaaaggatgagagttcatgtcctttgtagggacatggat<br>gaagctggaaaccatcattctgagcaagctatcgcaaagacagaaaaccaaacaccacatgttctcactcataggtgggaattgaataatgagagcactt<br>ggacaccaggcagggaacatcacacaccagggcctgtcgtggggtgtgaggagaggggagggacagcattaggagaaatacctaatataaatgataagtt<br>agtgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacattgtgcacatgtaccctaggacttaaagtataatttta<font color="green"><u>AAAAAAA<br></u></font><font color="red">GAGAGGGAGGAGCCAAGATGCCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCACCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAATTATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGAATAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAACCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAATGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATTCCC<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGACGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCTCATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGGACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>TTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCACAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCAATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGAAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTCTGNTAAAAAAAAAAAAAAAAGAAAAG</font><font color="green"><u>AAAAAAA</u></font>tagtaaaataatattatctttttgcatacctggaaaaaaaaaaaggctcac<br>aaggctctacatggtctgcattccagttaccactctgactgccattgctttctcctctgcacactccatttcagcatctttgttatgccttccctaggat<br>ctctcacttattactcactatgcctggaatgttctttaacaagtttccgaatgtatcaccaccttacctctctcaatccttccctgaaaaccttatttga<br>aatttcaacactcctgcaagagatattccctttcattcctgtttcacttttcttcacaatacttcttcatgatctaatatactattttcaaaagctttat<br>tgaaatataaatcacattccataaagttgactcattgaaaat	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr18	12481263	12481264	2000023	0	+	Database25; RIP_L1_chr18_012_01;AC206473	TCTTCCACCATTCCATATTG;NA	TAGAAGTAACACTCTCACAG;NA	LINE	L1	L1HS	aaaatcaggaacaaggcaaggatgaccacttctatattcaacatagtactggtagttctagccagagcagttaggcaaaaaaagaaataaaaggcatcca<br>attggaaagaaagtaataaaagtgtccctgtttgcagatgacatgatcttacagatagaaaactccataaaaaattttttcaatacactaacaacaaaaa<br>gacaatcccattgacaacagcaccaaaaagaataaaatatctaggagtaaatttaataaggaggtaaaagacttatatacaaaaactatgagacagaaac<br>aaatggaagaataatattcatgaattgaaagacttactgttaacatgtgaatactacccaaagctatatacagatccaatagaatcccc<font color="green"><u>AAGAAAATCCT<br></u></font><font color="red">GGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAAATGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGACAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTCACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAACTCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTACACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATGCTTCAAAGAGAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGAC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACTATGAGATATCATCTCACACCGGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACAC<br>TTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>CATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGG<br>TGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAA<br>ATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACAAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAA<br>AACTTAGAGTATAATAAAAAAAAAACACCATGGGAAAAAAAAAAAAAAACCATACCAAGCCAACATGGAAATGTTTGTTATTTTAATTGTTATGATGGTT<br>TCATGGCTGTTTGCATGTGTCAAAACTCTTCCAATTTGTGTACGTTTAATATGTGAACTTATTGTATGCTGGTTACACCCCCAAAAAACTGTTTAATTTA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAATCCT</u></font>aatggtattttttacagaagtagaagataatcctaaaattcctatggaaccacaaaagacaatgaatagccaat<br>caatcttgagaaagaataacaaagccagagacatcacactttctgatcttacaatatattataaagttacaataacaaaaacagcatggtactggcaaac<br>aacagtggaacagaacaaagagtccagaaatgaacccacacatatacagtcaactgatcttttttttttctttctttctttccatggaatcttggttcac<br>ccaggctagagtggagtggtgcaatcacagctcactacagccttgatctcctgggctcaagtgatccactctgaagctttgtcaccagaaagtacattta<br>attatttcaacccat	Other;OTHER	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intron:SPIRE1:NM:020148:8/16;intron:SPIRE1:NM:020148:8/16	
0	chr3	83935819	83938039	2000024	0	-	Database27; 238697; RIP_L1_chr3_083_01;AC208155	GTAGAAGCTTCTTTAAAGCC;NA	AGATTGGCAGATGCATAGAA;NA	LINE	L1	L1HS	ttaataaatatttagcaagtgtttcctatttttatgacagtagggtttaattcatctatgaagatttctccagtctctttacccatcttgaacttaccaa<br>ttttcaatactaatataaattcctataatcagcaccatgccaagtacaaatgttctttttgtatgctctttgatctttataacgtgatcataaatgtatc<br>acatagaccacatgacagattggcagatgcatagaattattcaataataaacacatatagactacttaaaattaagtttaaactttatcaccaaagtata<br>gctttagtgattttattttgcatttaataagaactctggtaatgctacaactaaaaggaaagtatgttcaaaagcaaagggtatatt<font color="green"><u>AAAAGGCCATATA<br></u></font><font color="red">TTTTGTGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAAT<br>GGGCAAAACCTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGG<br>CAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCC<br>CATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACC<br>AACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGA<br>AGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAA<br>TATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACT<br>TTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTAT<br>ACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATAT<br>CTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGT<br>AGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAG<br>AAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATG<br>GGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAAGAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCA<br>TCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACA<br>GACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAG<br>ATATCATCTCACACCATTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACCCTGTTGG<br>TGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGG<br>GTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCACTATTCACAATAGCAAAGACTTGGAACCAACC<br>CAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTA<br>GGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAA<br>TGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATGGTATTGGGAGATATACCTAATGCT<br>AGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAA<br>TAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGGCCATATA</u></font>atctattttctaataagattttttgttttgaacaaaaatgtattctaccaggtgagttaatattta<br>caatattatccaacattatcacctctgacactatataaataagctcagaaaactatacattcttaataatagatctagtctttgcaaatttatgaataag<br>aggcttcacaagtttattttagtgttctaacttttttgtatatatcttctcctatcctgggggtgttgggggaagtaaataatgaaactactctacctca<br>taatataactattatttgaatctgttacctaatttaaacttgaacgaatttcatttacaatgatgagaattttatttgagcaataaggagaaaacacacc<br>tctcaatcaaactgagaataa	UCSC;UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr9	91951708	91957755	2000025	0	+	Database28; RIP_L1_chr9_089_01	ATTTGCTTACTGTCCTAGTG	GTTACAGATAAGCCAAAGTG	LINE	L1	L1HS	caatgctaaccactcctaaaagaaaaccaaggtaattgttgtgtttgatatagtctttcacactttaaaacgtgtttatgtacaaaatatatgtctctag<br>aaagaagttgggaagaactgacatcttgacaatattgactctttctttccatgaacacagaatatctcttcattaatttagttattctgtggtttctttt<br>atcatctttttgtagtctttctcatatagatcttatacatattttttacagcttatacctaagaatttcattattaggggtgcaaatgtacatagtaata<br>tgtttttaatttcaaattttatgtatttattgctgatccatagaaaagtgtttgacttttgtatattaatcttgcaccttgctat<font color="green"><u>AATTGCTTCTTATTG<br></u></font><font color="red">AGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTACTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCACGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCAGGTCACTCCCACCCAAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACAGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACTGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGATGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTACAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGTGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATGGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCACCAGTGTG<br>CTGTATTCAGGAAACCCATTTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTTCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCCGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAATGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATTGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAAGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAGTAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTGTTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGGTCAACCATTGTGGAAGTCAGTGTGGCGACTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGAGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAATAAAATAAAATAAAATAAAAAAAA</font><font color="green"><u>AATTGCTTCTTATTG</u></font>ccaggctttttgttgttgttgattcttccagattttc<br>tgcataaagattacatcatctgcaaacaaagagggttttctttctttcttttcaatcagtataccttttatcccctttcttgttttattgcattagctag<br>gacttttggtatgatattgagaagcagtggtgacaggggatatccttgccttgtttctgatcttagtgggaaagctttggttttctcagcatcgaaagca<br>tttttaattgcagaaataatgtatgaacctattctctttatcaaagtaaagttacagataagccaaagtgcctttttcccaaattatcaatgccaaccac<br>tcctaaaagaaaaccaaggtaattgttgtgttttatacattctttcat	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr6	24919871	24925929	2000026	0	-	AL512428; Database29; RIP_L1_chr6_024_01;AC213274	AAACATCCATGTCAGGAGTT;NA	GATGTATGGTGATTTCACTC;NA	LINE	L1	L1HS	gcatgatggcaggtgcctgtaatcccagctactcaggaggctgaggagggagaattgcttgaacccaggaagttgcagtgagccaagattgtgccattgt<br>actccagcctgggtggcagagccagactctgtctcaaaaaaaaagagagagagagagaaaaggaaagtatatcttattttaaaagggagatgagatgtat<br>ggtgatttcactcatttttattgtgaacaacaaaaagcaaggacaaataagatttgaaaagaagtactaaattcagtatgccactgaattcccagatcct<br>tccccgcaagctctctttattaagcagagaaccagttttgattgtcataaggaggtgtcgtgagcagggagagagctagaatgt<font color="green"><u>AAACAAGTACTAAACG<br></u></font><font color="red">GAACAATAATACCACCGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGC<br>ATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGTGCGAGCCGAAGCAGGGCGAG<br>GCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCC<br>GAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATT<br>GCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGG<br>GAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGC<br>AGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCT<br>CCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACA<br>GACCTGCAGCTGAGAGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCA<br>AAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCT<br>CACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCA<br>AACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTG<br>AAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATG<br>AAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCT<br>GATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCC<br>AACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGA<br>AGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGC<br>CAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAA<br>ATAAAATACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACA<br>ACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCAT<br>AATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAACGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGT<br>CAAGACCCATCAGTGTCCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATG<br>GAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGT<br>AAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAA<br>AGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGG<br>AATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACAC<br>CTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATC<br>AAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGA<br>AGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTAT<br>AGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAA<br>GCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTT<br>TTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATAT<br>CACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTC<br>GACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAA<br>CCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGA<br>AAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATA<br>TCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATTCAGCAGCACATCAAAAAGCTTGTCCACCATGATCAAGTGGGCTTCA<br>TCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGA<br>TGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATC<br>TATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCC<br>TATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTT<br>TGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATC<br>AATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAA<br>AATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAA<br>GAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCA<br>ATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAG<br>CTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAA<br>CAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTCGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAAT<br>AAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTCAAACTGGATGCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATT<br>TAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAA<br>AGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCT<br>ACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACA<br>ACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGC<br>CATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAGGTGCTGGAGAGGATGC<br>GGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCATCCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAA<br>TACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACT<br>ATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCC<br>ATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAAATGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCA<br>TATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGA<br>GGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGATGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATG<br>TGCACATGTACCCTAAAACTTAGAGTATAATTAAAAAAAAAAAAAAGAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGTACTAAACG</u></font>aatgggaactcctgacatggatgtt<br>tccctttcaatggcaagatgtaatgtttgacctactttcatcacaaaaaaataagacaaatcagtcttgagaaaagaatgagagaaggccaggtgcagtg<br>gctcatgcctgtaatcccagcactttggaaggctgaggcaggcgtatcacttgaggtcaggagatcgagaccagcctggtcaacatgatgaaaccccgtc<br>tctactaaaaatacaaaaaaaattagccaggcatggtggcacacacctgtaatcccagctactggggaggctgaggcaggagaatcgcttgaatccagga<br>gacagaggtttcagtgagccaagattgcaccactgcactccaacctgggcgacagagac	UCSC;UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intron:FAM65B:NM:014722:21/23;intron:FAM65B:NM:014722:21/23	
0	chr9	103483801	103484548	2000027	0	-	L1HS486; Database30; RIP_L1_chr9_101_01	TTCTGCCATTCAGTTGACAT	CATAAGTCACATCTGCATAC	LINE	L1	L1HS	cacgcctggctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcatgatccgcccgcctcggc<br>ctcccgaagtgctgggattacaggcgtgagccaccacgcccagctacaagttgtttttttaaatgttagttaattggagcaattattggtggaatattat<br>tttgagaatacctttataagcgcatttgaatggatgtttttgcctagccaatgaccatgtgttgaactatggtcgggtagacaaaatgaagacttgaatt<br>ctgacatttaggagctgacagtctagtgaatgaggtcgaaatgtaagtaaatggttataaaacaatgggatgtgtgatttat<font color="green"><u>AAGAATAGGGATATATTC<br></u></font><font color="red">CAGAGAAATGCAAATCAAAACCACTATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGC<br>GGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAA<br>TACCACTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACT<br>ATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCC<br>ATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCA<br>TATTCTCACTCATAGGTGGGAATTGCACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGA<br>GGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATG<br>TGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAGGGATATATTC</u></font>agatatacagagggaaataatgaactcttctcag<br>atatttggtgatgagggaaaaacactggacttggatcctgtaaatgaaaaggggttttaggtttggaacaaattcacagacaaaggaaatgacatatgca<br>aattcaccaagacctgaaagataaatttagtatggctggagcattaattgcatatgaaaaggatttgagatgattctggaaaagtagtcaacttgataac<br>ataccacacagagtttgtatgccaagctaaggcatttgcattttatatgcagagcggatgtcaactgaatggcagaacattagccctgacatatttataa<br>aaatcataatcctgtaacaaattaaccaaataaagtaatacagtataa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	905	139	NA	intron:GRIN3A:NM:133445:2/9	
0	chr7	49690395	49696443	2000028	0	-	AC009645; Database31; RIP_L1_chr7_049_01;AC207178	GAATCTCCATAGTCCATTAC;NA	ATCACAGATGCTTGTTACTG;NA	LINE	L1	L1HS	tggccgtgtgcggtggctcttgcctgtaatcccagcatttgggaggccgaggagggtggatcgcttgaggtcaggagttcaagaccagcctgacagggtg<br>aaaacctgtctctactaaaaatacaaaaaattagctgggcatggtggcaggtgcctataatcccagctacttgggaggctgaggcagtagaattacttga<br>acctggtaggtggaggttgcagtgagccgagatcatgccactgcactccagcctgggtgacagagtgagactctgtctgaaaaaatcatgctgctataaa<br>gacacatgcacacgtatgtttattgcagcactcttcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggatt<font color="green"><u>AAGAAAATGG<br></u></font><font color="red">AGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCGGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCACTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATACTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCTGCATTGCTAAGTCAACTCTAAGCCAAAAGAACAAAGCTGGAGGCATCACGCT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AATACTTGGAACCAACCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAAAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAATGG</u></font>catatatatgccatggaatactatgcagccataaaaaatga<br>tgagttcatgtcctttgtagggacatggatgaaattggaaatcatcattctcagtaaactatcgcaaggacaaaaaaaccaaacactgcatgttctcact<br>cataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacactctaggaactgttgtggggtggggggaggggggagggatagcat<br>taggagatatacctaatgctaaatgatgagttaatgggtgcagcacaccagcatggcacatgtatgcatatgtaactaacctgcacattttgcacatgta<br>ccctaaaacttaaagtataattaaaaaaaaaaaaacttgaggcacttac	UCSC;UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr4	108347278	108351163	2000029	0	-	L1HS430; Database32; RIP_L1_chr4_108_01;AC206894	AGCTGTGTTGATCACAATTG;NA	ATTTGCATGTTGTGCTCACT;NA	LINE	L1	L1HS	gaatttagaaaacaaaaccgaaagcagctcagtagctgtcagtgaagagcttcatgtgtccaggcattcagggaccccagagatagcatttgcatgttgt<br>gctcactgcaaacttgggcagtcataatcttggaggcattgttgtcctcattttataagcaacagtaaaacattacctttatagtagactggattgttaa<br>atccaggaagattcatgccctgttaatcttgtcccctgctaccatgactccaagtatttttaattccacaaagcctttctgcagttttcatcaccttctt<br>gttttccctgactgcttccttattctggtattttgctgagtcatgataaggtatcagagaaccaacatgtaggaacaagt<font color="green"><u>AAAGAGAATCCTAATGTTTT<br></u></font><font color="red">GGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACC<br>AACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACA<br>GGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACAT<br>TAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCC<br>CAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGA<br>ACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGA<br>ACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAA<br>TCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCA<br>CAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACAC<br>AAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGA<br>GAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTAC<br>GCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAA<br>TAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGA<br>GGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAG<br>CCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGC<br>AGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATAT<br>AAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAAATCAACAACCCTTCATGCTAAAAACTCTCAATAAA<br>TTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTT<br>TGAAAACCGGCGCAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAA<br>GGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTATATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTT<br>AAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAA<br>TCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAA<br>ACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCC<br>AAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAA<br>GAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAAC<br>AGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAA<br>CCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCC<br>TTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCA<br>GGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTC<br>TGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAA<br>TCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTA<br>TGCATCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCTCACACCAGTTAGAATGGCA<br>ATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGT<br>GGAAGTCAGTGTGGCAATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATG<br>CTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATT<br>AAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCA<br>TTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAA<br>TATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCAC<br>CAGCATGGCACATGTATACATATGTAACTAACCTGCACAAGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAGAATCCTAA<br>TGTTTT</u></font>aatattttggaggaggatatgatccatatgattacattttgtttgggttgggtttctcagacctcctttgacctgtaaccaaaaaattcttcag<br>cagtatttacaattctgcccgtctgcacccaaatggtttgtgtgtgtgtgtgtgtgtgtgtgcatacacacacacgcctgcacgcacacacgtgcacatg<br>catgagtatgtgcttccttcttgtactgtataataggtctgtagcatacaagctgttaagtcattttatggaagttctgtggaaatgctaatgtatacta<br>gcaattgtgatcaacacagctgttaatcatcaatgtttctgtatctccaaaaaagccaacaaacctgagaactgtcgctgatttta	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	4034;NA	127;NA	NA;NA	intergenic;intergenic	
0	chr1	30813270	30814224	2000030	0	+	Database33; RIP_L1_chr1_030_01	CAAACAGGATCTAACATAGG	TGAGAATGTACACAGAATGC	LINE	L1	L1HS	gagtaaaaattgtcacttcctgacagggccaaaaaccttaagactgtaagtaaaatccaaaatctgcctttgtttggcttcataacctcaagaggttttt<br>aaacctgaggttcctatgtgatcaatgtagagagaaaaagtgatgtttctaatgcaaaactataatacaccatgaggagtttccatgtaaccagggttat<br>aagattgtatccctgtgcattgtttttaagtcttgttatctaccagtagactagaataaatcctgaattcatctagatttatctgtgctttcttccatga<br>actactgaaaatggaaactgctctgttcctgaatctctataagctgaaactaaataaattttaaaaaacaagcctcatcaacctacaacatgggag<font color="green"><u>AAAA<br></u></font><font color="red">TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGTTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCATCCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAAATGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGACAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAATAATAAATCAATAAAAAAATAAATAAAT</font><font color="green"><u>AAAT</u></font>aaataaataaataaataaaaaaaacaagcctcatgcctgat<br>atatgggtcacatgaaaagttcacctaatcacccaaggttatgaccagagacattcaaatcacaaactaggatgagaagttgacattttcacactgtaga<br>cagcttttcccaagatgttggaacaagactccatatcataatgagattattaccccttttaacactacctttcccacttggcaggatagtggtataattg<br>cagtttcacagtcagtagcttctgctggtcactcgacagaacctgacctaagagatcctttagtgtctattggttaaataagaaaatgtctgtgatgttg<br>ctaatactacctgctgttcctatgtaaattcctctgggaaagttgagacctatat	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr4	182113797	182115282	2000031	0	-	Database34; 237877; RIP_L1_chr4_182_01	ATTAGACGCTAGTAAACCTG	CTACATTGAGCATGAAATGG	LINE	L1	L1HS	ttatactatcaggtttgaccaatagaaaaatgtaagtaggtaatatttaaactacattgagcatgaaatggttcttagtattgagatgagaaaaatcaga<br>aaagatgaagaatgagatgaaaatatttccatagaaaagttttattagatacaaaacttgaaactagccacatttttgtacttataggggtttctataaa<br>ccactggtcataaaacatgcaaaaatattttccccaaacattaaatttggctccattattgagtgcctggtgtgttgcagatgcggtagtgagtgcaccc<br>tgcaatcctatgcaataggaatcacatctcctttcacaactgggtaacatgcaagccaagcaactagctcatgtctacgtagct<font color="green"><u>AGAAAGTGCTGTAGAG<br></u></font><font color="red">TTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGG<br>TTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCC<br>CAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGG<br>GCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGT<br>GATGCCTCCAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACA<br>TGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCA<br>TCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAG<br>AGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGA<br>GAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATAC<br>CATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATT<br>CACAATAGCAAAGACTTGGAACCAACCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATA<br>AAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATAT<br>TCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGG<br>ATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGC<br>ACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAGAATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGTGCTGTAG<br>AG</u></font>aacgttgaaattcaaatctgaccagcttccaatcaatcctcccaacgtgctatgatgaaaagtatacaagttaccagaaaagaggttttggattctca<br>gccttgagtgatgcttaaataggtgaacaaccatcgtctgtcctgtttgaaattaggtctttctgataagagcataggaaacagctaatttcctgagacc<br>ttttccaggtttactagcgtctaatttttcctgcaacagttagttttagtgatttattataacctccaagataatgcaaaatgaattcttttttctttct<br>agataaatgtgctcaggatatttaaactggcaacaaaagttatcaaaattatgctatgaaaaagtaattttatttgtagttatgaa	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr3	138555022	138556117	2000032	0	+	Database35; L1HS301; L1HS372; RIP_L1_chr3_138_01	GGTAGAATGCTCATACATGT	GCATGTGGTAATTTCTACTG	LINE	L1	L1HS	ttgaataaaaacactcagaagctattttaaaatgcagaaaagaagagaaagaggaaatagcacaggtatggtaaatttgacccaaacatatcagtaacta<br>cattcaaatcaaaaagactaaatgcttgaggacaggagtttgagaccagcctgggcaagagagagaccccatttctaaaaagaaaaagaaaaagaaaaat<br>aattagcctgttgtggtggcatgcttgtagtcccacctacttgggaggctgaggcaggaggattgcttaagcaccggactttgaggctgcagtgagctgt<br>gatgcaccactgtactccagtctgggtgacagagagatacatcattataaataaataaataaataaaataaaagttctttagagtg<font color="green"><u>AATAAAAAATAAAA<br></u></font><font color="red">CTCATCTACACTGTTATGAAAGACACATGTAAAACGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGG<br>ATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATC<br>TGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGA<br>CACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGAT<br>ATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTG<br>GGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGT<br>ATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCA<br>AATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGG<br>GACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATG<br>AGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAG<br>ATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTAT</font><font color="green"><u>AATA<br>AAAAAAAAAA</u></font>aaaaaaaaacacaaggataaataagttgaaggtaagaagaaagaaaacatcagaataaagctgatataataaaatgtttaactcataatg<br>aatatataataattttaaattttatgcacttaataatatagaagcaaaatataatgcacaaattttataggtttatgagaactggatacatccatgatca<br>aaatgagtaattatgacatatctatgaataattcattttaataaacaggccaaaaaaatcagcaaagttatagggaatcaaaaacatgtatgagcattct<br>acccaccatctatgggatagatattcttttttaaaattttattctccctggctcttcatttttattttttctaaagtttttatttttgatttttat	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr8	129534351	129540448	2000033	0	-	239178; Database36; RIP_L1_chr8_129_01;AC225986	TCGCTTTCTCAAATGGAAGT;NA	AGTTACCTCTCATTTGTCTG;NA	LINE	L1	L1HS	cttccccttacttcacagccacgtagcacttatggctgtaagagccagcacttggccaagtgcaaatgcatgaccttattaatttatgcatgtgaaactt<br>ttcttagggagggagaagtattccattaaatgatatctatctccccaattccattaattagttaataaaaaagttaaagagaatttcatggggatacact<br>ggcttctgtgatagaatatcagctaagtgagatattaataaaaagacaacatgtgtctatatcagactcctcagtaaggtgactgaggctaaaactgaca<br>atgtaagttacctctcatttgtctgatgtgtggattcactgttctttttatctgggttagtttttgctgtgatgaaataaggttt<font color="green"><u>AAAAACACAAGCTGG<br></u></font><font color="red">GAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCATGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGAGGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACTGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCCAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTCAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAGACTGAATAATAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAACACAAGCTGG</u></font>atagctagaaagaaggaattcattgtgaagcaggtgctatacattgcctcatgtagtagtctcaaccagaggctaagtattgtgtaa<br>gcctgtttgctatacaggatactaatgctcagagaaggtgatatgttttcctggggtcacacaggtaacaagtatccaagctggactttaatcctagttg<br>atctgacctaaaagtctattctcttctcactgcaccatattttatgaggacatgctgtaagtcaagacaggatgtgaacagagaattgacaattgaaggg<br>agacagagaagatcaggaaagttcctttcacattaaataagttcatggaatgaatgggggagaacatggaggaggtgggctaaattcctgcaattaga	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr6	129361224	129367267	2000034	0	+	Database38; RIP_L1_chr6_129_01;AC217520	CCCAACTGATTTAAGTCAAC;NA	CGAACCAGAAAGTAAGTCAT;NA	LINE	L1	L1HS	atggataggagaaaggaccctgagttattataacagagtccaagagtcagagagctgcacagatggggtgggatatgccaggtcaaggaaagggccatgg<br>gagtgggtgcctgatgcggagaggaggaaaagaggtcagcgaggaggtaaagagcctgggcacagtcatgttggtagattttacagttacataaggagag<br>gtaggaaggaagatggcgaaccagaaagtaagtcattaataatggctggaaggtggttttatgagggatgtggattttcagagagaaagagaaaactgat<br>taagaagtagcatcaaagaggagcaaagttgatgcacaacctatctctagatcttgaaggtcttatagaatattgtttctaagtc<font color="green"><u>AGAAGTATGATGACA<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGCTCTACAGCTCCCAGTGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGTACGCAGCTGGAGATCTGAGAATGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGAAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATCATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAAACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGACAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAACATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCTGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAATAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAGTATGATGACA</u></font>aatggtcattttccttaaaataaaatcatatatcactactt<br>actgacttgcacctatatgtacttctgggaaatttagccagcatgtatttccacaatacagggatagtttttgttctgtggactgctaaatgatcacagc<br>ctaatgtattgccttctcagtaaacacacgttgacttaaatcagttgggtaaattgtaaactcaattccttactttgactttagtttgcaaattaagaat<br>agtgtacttttcttattttcaggccttatttataattcctaatgctatacactattatgttacagcttgcacttgtattttgacactttctaattattgt<br>caaattataaatactactaattaatatatccttgattcttcata	UCSC;UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intron:LAMA2:NM:001079823:1/64;intron:LAMA2:NM:001079823:1/64	
0	chr13	29113838	29119844	2000035	0	-	L1HS235; Database39; RIP_L1_chr13_029_01	ACAGGATCTTAAGGTTGAAG	CATTGTGTGCCATGAAAATG	LINE	L1	L1HS	tcaaaatggtattgtaggttctacccaaagtagtcaagaaaaagaaataaaagatatccagtggaaaaagacaaagtaatatctttatttgcagacgata<br>tgatcttatacatagaaagtgctaagacacacacacacacacacacactattagaactaataaattagttcaaagatacaagatgttattacatgatttt<br>tcatggatagtgtatataaatgcaatgaaactagagataatctaatagacatatatatatctagatatattttatatatatattaaacattgtgtgccat<br>gaaaatgaaacacagcataccaaaacttacggaatgcaacaaaagtggtggtcagaaagaaatttgtagctgtaaaaacctacatt<font color="green"><u>AAAAAGTAGTTCTC<br></u></font><font color="red">GAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGAC<br>AGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTC<br>CGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAG<br>ACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCT<br>GGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCC<br>TGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGA<br>GAGCAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGG<br>AGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACC<br>AGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAA<br>CTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCT<br>GAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAA<br>TGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGA<br>GCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAA<br>TGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAA<br>AACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCT<br>CGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCT<br>CAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAAT<br>TTTCAACCCAGAATTTCATATCCAGCCAAATTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCA<br>CCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATC<br>GAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATA<br>AATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCA<br>GAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGACAAAAC<br>AGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTAT<br>GCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCC<br>CACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAG<br>AACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGC<br>AAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTA<br>CATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACAC<br>CACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGAC<br>ACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGG<br>AAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAA<br>GAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTAC<br>AAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTC<br>TGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCA<br>GAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATT<br>CTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAA<br>ACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGT<br>AATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAA<br>ACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGG<br>AAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGA<br>GAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCC<br>CAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAA<br>CAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAGCTTACAAGGGATGTGAAGGACCTCTTCAA<br>GGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATG<br>GCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATAT<br>GGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTAC<br>AGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTG<br>ATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAAC<br>TGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGG<br>CATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAA<br>CTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGC<br>TAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGTGAAGGACATGAACAGACACTTCTCAAA<br>AGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACA<br>CCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAAC<br>TAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAA<br>TGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACA<br>ATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGA<br>AATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGG<br>ACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTA<br>GTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAGTAGTTCTC</u></font>aaatcaatatccaaaccttcaaccttaagatcctgtatctatttagatatattttatatacattagataaaatctaata<br>aatgatatataatctaacacatactatatattagataaaatctaatcattctagtggaactattagaacattagttctaaatacagattattttagattt<br>tttagggatataatttttttatattatttctgaataatgataattctctttctttctataatttgtttctttttcttcacattatgtactgactagaata<br>tccagtaaaatgtttaatagaaatagttaatgatgagcatcctggtctgatccctgataccagaacaaaagctttcaacacttgcccaataagtatgata<br>ttggctg	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	59	6441	420	NA	intergenic	
0	chr5	24406300	24409193	2000036	0	-	238869; Database40; RIP_L1_chr5_024_01	TATATCTTCTACGAAGGAGC	ATCTTTGAGAATGCTGATGC	LINE	L1	L1HS	catgtcatgtttgttaccaaagtaatatagatacctttaaagactgatctcatcagtctataaatgtatttgtttctagtgtatttaaaataattgcctc<br>aatctattttctcatatttttctaaataattctcttctcttttttatgatctcaagtttgttaaagttataccaatggtatttttttctatttttaaatt<br>aaaaacaaatgtgtaatttcttgaatagtccatctgtatctttgagaatgctgatgcatattaactttgtattgttgcacaacagataatcagttatttg<br>tagtgtgcatgatgctatattatatgatttatgtcataaaaatgttgcattacttgcttgaaattgaatacacttatgttataat<font color="green"><u>AAAAATTTTGTTTTA<br></u></font><font color="red">GAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCT<br>TTGTCAGATGAGTAGGTTGCAAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAA<br>TTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAG<br>GTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTC<br>AGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGAT<br>AGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTTGTACCAGTACCATGCTGTTTTGGTTACTGTAGC<br>CTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCGATGCGGGCTCTTTTTTGGTTCCATATG<br>AACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTT<br>TCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTATTTGTCTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAA<br>GAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTCTGTTTGT<br>CTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTG<br>AGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTG<br>CCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCGGTTTTCAAAGGGAATGCTTCCAGT<br>TTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAAATACATCCCATCAATACCTAATTTATTGAGAGTTTTTA<br>GCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATT<br>TATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCC<br>AGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCCGGCTTTGGTATCAGAATGA<br>TGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCTCCTTGTACCTCTGGTA<br>GAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCA<br>CTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCGGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGA<br>GAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGA<br>ACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATT<br>GCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACT<br>ATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAA<br>ACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGG<br>AGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACAAGCATGGCACATGTATACATATGTAACTAACCT<br>GCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAACACATGAAAAAAAAAAAAAAACAAAACAAAACAAAGCAAACATGGAAATG<br>TTTGTTATTTTAATTGTTATGATGGTTTCATGGCTGTTTGCATGTGTCAAAACTCATCAAATTTGTGTACGTTAAATATGTGAAACTTATTGTATGCTGG<br>TTACACCTCAATAAAGCTGTTAAATTTTTTTAAATTTAAAAATATTATTTCAAGAATAAAATAACCAAACCATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAT<br>TTTGTTTTA</u></font>aaaaagtaattaaaaattggaatgattatttattttggggatatagatatgaagaaaaatattttcaaaccattaaacaatttttaatatt<br>tagtagacaccatttaatataatagcaaaactgagttttttaatgatgtcctcggttcattgtattaaaagagtttctcattggaaaaaatatgggaagc<br>attatatgaatgtaaatttgagcatataaaattgatagatccattataagattaatatccaaataataaaaatattcaaacattcaaataataaaaatat<br>cccatccaaacttaccaaacattaaaaataatacaaatattaaatatatatttaaaaagaaaatattcgaatttcattattgaggcagaaaagt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr3	59827944	59827945	2000037	0	+	Database41; RIP_L1_chr3_059_01	AAAGCTGAAGCTAATGGAAC	ATTAACAGGGATTGCATCAC	LINE	L1	L1HS	ttctggccaactgacttagcaaagagcagcacaatatccttgggctgagaccagcgggtttgccactgtctctcaccggcaatcgcattcttgcttccaa<br>atccggctgataatttaggaaggttttatgtcaccgctgctcggcttctttttgtgctttgattacctattctcatacaacacttaaaggtggtcacaga<br>ataatctctaatgttttgctttctatgataaataaggggttcgtgaagttcattaacagggattgcatcaccctccaccctcttttacaaccacaccata<br>aaagtagcctctaattagttaaaagactacaaattataccatcaacgtgaggtatggcaaaatctgatggctctaattatcttaat<font color="green"><u>AATCAGCAGAACCA<br></u></font><font color="red">AGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAA<br>AAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAA<br>ATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAA<br>TAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGTGATTCCTCAGGGATCTAGAACTAGAAATACCATT<br>TGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACA<br>ATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAA<br>ATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTC<br>ACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAG<br>CATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACAT<br>GTACCCTAAAACTTAGAGTATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATCAGCAGAACCA</u></font>ctctcaacctaataagagaatgagtcattagtggtagtttatgaagat<br>caccgacattctctttgttatggagtttgtccttcctgtgttaaaatttggacacactttctacttgaatctaaaaaggatgatttctaagaagttactg<br>aagcaatgcaagatcaaaacataataaccacattcattcttaatcagcattacagtgaaagtaatttaccacagaacacataattaagtcataaatgaaa<br>tctcaagacagaaattgctccccttttaagatttctcattgtccatacactcagaaatgagaagagggattttctcattctgatcctaaatctatcactg<br>aaatgatgacttcacttgcatttatgcattttgcttta	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intron:FHIT:NM:002012:8/10	
0	chr2	88810362	88813397	2000038	0	+	15600; Database42; L1HS360; RIP_L1_chr2_088_01	TATGGAAAGTGGCAACCTTT	GGAAGATGTCAGTTAGTTGT	LINE	L1	L1HS	cacccagaggtaagattgccactcagaggcagaccactgcgtatttctttccgcttttttatggctgtcacttgttcatgggctccagatatcttgtaaa<br>atctagggaagatgtcagttagttgtaccaagttttctcctgggaccttgagtattaattttggctgaggtcacaagtgccgaggtggttcctttccacc<br>acattccttgtggtttaaccgcaagggctcagtgtgaatgtagtgaagggaagtgggcaagcccagggctatatccagggcttcctgaggtctttgtgca<br>gaggtataagagtgagccagctcatggagcttgccactaagtggaaataaggaagaatcatctgaggcagccatggacattt<font color="green"><u>GAAAATATTAAAACTAAG<br></u></font><font color="red">CAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGC<br>AAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATC<br>AGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAG<br>AAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGC<br>CGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAG<br>GCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATA<br>AAATACTGGCAAACCGAATCCAGTTGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAA<br>ATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCC<br>TTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATG<br>GGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGC<br>AATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTATATCTAGAAAACCCC<br>ATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCA<br>ACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCGTAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAA<br>GGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAAT<br>ATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTT<br>TAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATA<br>CTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATC<br>TACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTA<br>GAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGA<br>AGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGG<br>GATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCAT<br>CTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGTGAAGGACATGAACAG<br>ACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGA<br>TATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGT<br>GGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGG<br>TATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCC<br>AAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAG<br>GGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAAT<br>GAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTA<br>GATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAAT<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATATTAAAACTAAG</u></font>ttttgtggtaaagactaacacaggggcagtccagaggagactgatg<br>ttggtgagggtgagcaacatcacaaaccctacctggcattttctgagccattattatgtaccagcttttgtgctaagtgctgtacctgtattaaactgtt<br>ttatttccagtattcttgaagataggataccacaattttcccattttatagatgtgaaaaaggcacagagagggtaagtcatatggctaatgccacaggt<br>tttaagtggcagaatcagaatttgaactcaggcacatcttttctagactaatgctagtttgagttttttgggaagaggtaaagtttgaattgggctataa<br>aggccaggtggcaggggcaggagagaacattccaga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intron:RPIA:NM:144563:4/9	
0	chr6	74922169	74923304	2000039	0	-	L1HS233; Database43; RIP_L1_chr6_074_01	TGTCTAAACTGTAAGTCTGG	TTATTCCTTGCCTCTGCATA	LINE	L1	L1HS	tactactactagaagcaaaacttcccaattatgttttaagataaactaagacctaaattttacttgagtagaaaacagtaataagcaaggcccctacttt<br>ctattgaaaaatatttaaaatctatgcacttattctacaaagtcaaagatttttaaaatgcaattattctattgcatgtttaaattaccatctttccttt<br>aaaaatattcagaaattcaattgtaataacatttgctctcacttcaaatgcttattctaagacaaccatggattagagagcagcaaaagagtttcaaaag<br>tgagtccttttctgagaaagcagagtcagagatttcttattccttgcctctgcatagatcaggaattctaaggttagagtagttt<font color="green"><u>AATAACTTGGTTTTC<br></u></font><font color="red">CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAATAAATAAATA</font><font color="green"><u>AATAACTTGGTTTTC</u></font>aatcctcagcacttggttgtagacaactaagacacagatagatatagat<br>gtggatatagataaacaaatgtttgtaaggtatctttaaaaaactttgatattctgtacttttttttcaaattacaaagataagtgagaggttttagaga<br>tactatttaatgacaattgtggatcaaatttcctatttacaaaagttttattttctgtctcctggccagacttacagtttagacatttaatgaatggaac<br>ctcaaataataagattttcacaaactaaaggactgtgtctttaacacacacaaaaaaaaactatataagaaaaaaagaactgaattaggcacaaatctcc<br>tatttttattctttgctatactgtgatccacataat	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	59	1232	81	NA	intergenic	
0	chr4	123793236	123797455	2000040	0	-	Database44; RIP_L1_chr4_123_01	AAGCTTACCAGTTCTTTGTG	GAACTTCATCAAGGACTTTC	LINE	L1	L1HS	agatggtggagtcattaagataaaatgagcttggtcccaaatcaacacttgttggagagctgtctggtgatcagtaggacccctttgaactgtgatgtga<br>gcaagaaataaactactcttgtgaggccaccaagattttggctagcatttacctgaatactcatttttaaacttaattcttacagcatccctatgaaata<br>gttattatccccattttacaaatggaaaaccgaaaatgaaagtggctacaattcttgcatgaggcatagccaagatttgaatgcaggcctgtctgactcc<br>acatgcctccccctccctctctatctctctctttctatcctgaacgcagaagttcctgtggcgaacttcatcaaggactttcacagat<font color="green"><u>AAGAACCATTTT<br></u></font><font color="red">CCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGG<br>AAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTA<br>AATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAACAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACAC<br>ATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAA<br>ACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAAT<br>ACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAA<br>CATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCA<br>CCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAA<br>AGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCTGCTCAACTACATGGAAAC<br>TGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCA<br>GAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACA<br>TCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGA<br>CACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAG<br>AGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTC<br>TACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACCCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGAC<br>CAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAA<br>GGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCA<br>AAGCTGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCC<br>AGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCA<br>TATAAACAGAGCCAGAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAAT<br>AAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCC<br>CTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAAT<br>AAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTCTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTC<br>CTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCC<br>AAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAGTAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTA<br>CAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTG<br>CCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAA<br>AAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAA<br>AACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGAC<br>AAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCT<br>TCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCAT<br>TCAGGACATAGGCGTGGACAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTCAAGAGC<br>TTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCA<br>GAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACAT<br>TTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGA<br>ATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAAC<br>CATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAA<br>ATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGAC<br>TGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAA<br>TCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAA<br>GGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCA<br>GCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAATTATTAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACCATTTT</u></font>atgcccttatgcagaaatgcatcaactctgtccaccaccaacagatggcagtagtggttgcctgtaaa<br>ccagcactttgaatttatgaacaaatggacttaagaatattatgaaataaaacataacctgtgtgtgcacagagagtttccaaatgttttgctgcctttt<br>ctctggtgagggataattttacctttttgagaattatcattgccaagttatttaaatgcccggggcttgtatagtctagaatcatgaagaaatggtctag<br>aatgagaccatttgaaaaaatgaggaaattggtttagaatcatttaataaccaatatgttcccttcagactctgacatttcattgtgcacatgtgagaaa<br>atataaaaaactggacccac	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr10	6451587	6457635	2000041	0	-	L1HS171; Database45; RIP_L1_chr10_006_01;AC193127	AAGAAGAGCACTCTTTTCTG;NA	TGCATAAATGGCCAACATTG;NA	LINE	L1	L1HS	ctgtgtcacccacacggttgggctttaagagatctgaggcttctgtctcttagaacactccctggagggacccagtgaatacactgtgagaagcccccag<br>agatgcactgtggatgagaactaagacatttgacacaacggtgaggttcttggctgacagctactgtgcagccatgtgagtcagccttcctggatgttcc<br>agtgcaggtgagcccacgtggagcagaagaatataccagctaaacacagccagctatagacttgtgttaggtaataaagagttgtttttaagccactaag<br>ctttgggacgatttattttacagcaatagataactgagacagtacaataacaagagaatctatctcctgaagaagtctctttc<font color="green"><u>AGGAAAATGATTTGCTG<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTATGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGTTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGGCAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACTCAGCTGGAGATCTGAGAACGGGCAGACTGCATCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACCAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATCCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGTGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCAAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCAAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCTGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAGGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAAGGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACTGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATACT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCATGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AGAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCACTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGGAAAATGATTTGCTG</u></font>atttataaaattgtaagcatcacaactttcatga<br>actttccctgaaactctcacaggtggatagttgtagttaatttgcaagatgaagaagcctgtgagttgagaactgcatcaaggaaagccgtgaatttgcg<br>attcagaacagagcaactttcccatcattcacagcccaggatggctgagcacagccagaaaagagtgctcttcttttggccaggggcacctgccctacag<br>acaacaatttcttctagagcataaattgttcacctgaaaatattgtaaagtgttggtacttttagcaaggaaaaaagcttatattctagaaaaataaatt<br>cagaaaggacaccactcataattttggaattaccgataattaaattcaa	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	6157;NA	91;NA	NA;NA	intergenic;intergenic	
0	chr2	34651133	34655080	2000042	0	+	Druze46; RIP_L1_chr2_034_01	ATAAGATATACATGCTACTG	TAGTATGTAATGCAGTTCTG	LINE	L1	L1HS	attgtaattttgtaattacattgaacccgccaacgtcctagtatgtaatgcagttctgattaagaaaaaggcatctctttaagttatgcactggagcatt<br>cactctcaacactgtggtggaagcaacaatgcatgccaagatagagcgtactacaaatatttgtaagaataccttgagtgctccttgagaaatcagactt<br>aatgggagatacccataattttttttaggttaactcaagatgtggtcctctcagtagctatgcattttgtaaagttcttgctctcttcttccagcacagt<br>tgggctgattttcctttgtgattcttaaatccttcatgcatacctttttagagtactgaatttattatactgtattttttt<font color="green"><u>AAAAAAATTATTATGTTTT<br></u></font><font color="red">GCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGC<br>CTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATA<br>AGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTT<br>TTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTTGTACCAGT<br>ACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAAT<br>GCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAA<br>ATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTATTTGTCTCCTCTTTTATTTCCTTGA<br>GCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTC<br>ACCCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTT<br>ATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCATCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATT<br>GAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCC<br>GGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAAATACATCCCATCA<br>ATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGG<br>CTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTT<br>GATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCT<br>CTGCCCGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTA<br>CCAGTTCCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTATTGCCACAATTTCAGA<br>GCCTGTTATTGGTCGATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTCGAGGAATGTATCCATTTCTTCTAGATTTTCTAGT<br>TTATTTGCGTAGAGGTGTTTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCGGTGGTGATATCCCCTTTATCATTTTTTATTGTGTCTATTT<br>GATTCTTCTCTCTTTTTTTCTTTATTAGTCTTGCTAGCAGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGATTCATTGATTTTTTGAAG<br>GGTTTTTTGTGTCTCTATTTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCTCTTGCTTTTCTAGTTCT<br>TTTAATTGTGATGTTAGGGTGTCAATTTTGGATCTTTCCTGCTTTCTCTTGTAGGCATTTAGTGCTATAAATTTCCCTCTACACACTGCTTTGAATGCGT<br>CCCAGAGATTCTGGTATGTGGCGTCTTTGTTCTCGTTGGTTTCAAAGAACATCTTTATTTCTGCCTTCATTTCGTTATGTACCCAGTAGTCATTCAGGAG<br>CAGGTTGTTCAGTTTCCATGTAGTTGAGCGGCTTTGAGTGAGATTCTTAATCCTGAGTTCTAGTTTGATTGCACTGTGGTCTGAGAGATAGTTTGTTATA<br>ATTTCTGTTCTTTTACATTTGCTGAGGAGAGCTTTACTTCCAACTATGTGGTCAATTTTGGAATAGGTGTGGTGTGGTGCTGAAAAAAATGTATATTCTG<br>TTGATTTGGGGTGGAGAGTTCTGTAGATGTCTATTAGGTCTGCTTGGTGCAGAGCTGAGTTCAATTCCTGGGTATCCTTGTTGACTTTCTGTCTCGTTGA<br>TCTGTCTAATGTTGACAGTGGGGTGTTAAAGTCTCCCATTATTAATGTGTGGGAGTCTAAGTCTCTTTGTAGGTCACTGAGGACTTGCTTTATGAATCTG<br>GGTGCTCCTGTATTGGGTGCATAAATATTTAGGATAGTTAGCTCCTCTTGTTGAATTGATCCCTTTACCATTATGTAATGGCCTTCTTTGTCTCTTTTGA<br>TCTTTGTTGGTTTAAAGTCTGTTTTGTCAGAGACTAGGATTGCAACCCCTGCCTTTTTTTGTTTTCCATTGGCTTGGTAGATCTTCCTCCATCCTTTTAT<br>TTTGAGCCTATGTGTGTCTCTGCACGTGAGATGGGTTTCCTGAATACAGCACACTGATGGGTCTTGACTCTTTATCTAACTTGCCAGAGTGAACAGGCAA<br>CCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAA<br>ACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACT<br>GGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGA<br>GGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAAC<br>TAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATGAAGACACATGCACACGTATGTTTATTGC<br>GGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTAT<br>GCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAAC<br>ACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAG<br>GGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGC<br>ACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAA</font><font color="green"><u>AAAAAAATTATTATGTTTT</u></font>aatttttcatggctgtgtccctctgccccagta<br>gaatgtatatcttatcactctgtgcggtcctcggcacaaagtgtcagttgcttaccatagctaaactggatggggaaatattactatgaccaggagaggg<br>acacagaagaacacagacttatctttctcaaaatagagaaagagaaaaaaaaaagaatcatgttaatcgcttgaaggacttacacaaaatttggcatgct<br>taatttaacaatatcaataaacatgaaaacaacagttacatctatgtgtatggtatgtgtcagatactgtttaaagatgccttcacactgcttggacact<br>aagaagcaaacccatcttaacatgatttcactctttcatagcctttgt	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr16	82228359	82234413	2000043	0	+	Druze47; RIP_L1_chr16_082_01	AGAACTTGATATATACGAAG	TACAGTTTGAACTCAACAGC	LINE	L1	L1HS	ctgaactaatctacattcccaccagcagcatatatgtgttcccttttctcctagttctaccaacatctgtaattttttgacttttgaacaaaagccattc<br>caactggtgtgagatggtaactcattatggttttgatttgcatttctctgctgattagtgatgatgagcattttttcatttgtgaattggccattcatat<br>gtcttctcttgagacatgtctgttcatgtcctttgccctctttttaatggttatttgtagaaaaccattttaaatacagtttgaactcaacagcttttta<br>tcccctctaaaattatttttctgattaaaacataactcatttccattgtaaacaacattaaaatatcaaaaacgtctaatag<font color="green"><u>AAAAATTTAACAGATCTC<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGCTCCCAGCGTGAGCTACGCAGAAGACGGTGATTTCTGCATT<br>TCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCA<br>TTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGATGCACCTGGAAAATCGGGTCACTCCCACCCGAA<br>TATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCT<br>AGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAA<br>GCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGT<br>AACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCT<br>CAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGATACCTCACACGGCAGGGTATTCCAACAGAC<br>CTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAA<br>GTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCAC<br>CAGCAACAGAACAAAGCTGGTTGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAAC<br>CAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAA<br>ACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAA<br>TGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGAT<br>TGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAAC<br>GTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGG<br>AAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAG<br>AAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATA<br>AAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACC<br>GGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAAT<br>GACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAA<br>GACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAA<br>AACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAA<br>GGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGA<br>GACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAAT<br>TGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTA<br>TTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAA<br>CTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGG<br>CAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGC<br>ACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCT<br>AGCAGAAAGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTG<br>AAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCAC<br>CACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTCGAC<br>ACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCA<br>AAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAA<br>AGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCC<br>TTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCC<br>CTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGC<br>AGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTAT<br>GACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTAT<br>TCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGC<br>AGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAAT<br>GTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAAT<br>ACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAA<br>CATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATG<br>ACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTG<br>GAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAG<br>AACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAA<br>TGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAA<br>ACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGC<br>AATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACA<br>ACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACC<br>CCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCAT<br>CAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCCGGAGAGGATGC<br>GGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTACTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAA<br>TACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACT<br>ATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCC<br>ATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCA<br>TATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGA<br>GGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATG<br>TGCACATGTACCCTATAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAGAAAAA</font><font color="green"><u>AAAAATTTAACAGATCTC</u></font>tccacacacctgagagaggactatgtt<br>ctttcccttcgtatatatcaagttctacttttttatttacaaacgtgtgatcacactctcttcagtatattgccatctgtctcacgatttgtatcttttt<br>ccttgtctgtaaaaagggagaactattaataatactctatttctttagtctttggtgaggatcaaatgataaaacacatgcagagagtttaacccagcac<br>ctgctacatagtaatgtctttgttgatgttatttttattgttcccccttcagcttatgctacctgctttgggtgatcttggcctttcttggtggcaataa<br>agggcagagaaactccataatgtttagtaatccaagtcagtttgcagaagcagtc	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/45	NA	NA	NA	intron:CDH13:NM:001257:8/14	
0	chr9	68343959	68343960	2000044	0	+	Druze48; RIP_L1_chr9_067_01	CATCTCTGATTATATGTGAA	GACTTATGTCTAACCTTTGC	LINE	L1	L1HS	ggaataaagctagaaataaacaacaggaggaaattcagaaattgtgcaaatacatacaaattaaacaacatatccttaaacaaccaatgggtcaatgaaa<br>aaaaatttaattttaaaaatgtcttaagacaaataaaaatgaaatcagaacatatgaaaacttatgaaatacagcaaaacagtccttagaggaaagttta<br>tagcaatgcatttctacatcaataaggaagaaagttaatgaataaatcatctaacaatgtatttcaaggaagtataaaatcaagaacaaactaagaccca<br>aattagcgaaagaatataaagatcagagcacaaatatacataatgaagataaaaaatacaaacgactaattaaatgaaggaatctttttt<font color="green"><u>GAAAAGGTAA<br></u></font><font color="red">TGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATC<br>CAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGCCAAAG<br>ATCAGATAGTTGTAGATATGTGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTA<br>CTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTT<br>CCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATG<br>GCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTGTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCT<br>CCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTC<br>TGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTT<br>TCGGCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCT<br>TCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCAGTTTTCAAAGGGAATGC<br>TTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAAATACGTCCCATCAATACCTAATTTATTGAGA<br>GTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGA<br>TTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCG<br>GTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCCGGCTTTGGTATC<br>AGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCTCCTTGTACC<br>TCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAGCTATTGATTATTGCCACAATTTCAGAGCCTGTTATTGGTCTATT<br>CAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTCGAGGAATGTAACCATTTCTTCTAGATTTTCTAGTTTATTTGCGTAGAGGTGT<br>TTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCGGTGCTGATATCCCCTTTATCATTTTTTATTGTGTCTATTTGATTCTTCTCTCTTTTTT<br>TCTTTATTAGTCTTGCTAGCGGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGATTCATTGATTTTTTGAAGGGTTTTTTGTGTCTCTAT<br>TTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAA<br>AACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAAC<br>AGGCAACCTACAAAATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAA<br>AAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATC<br>ATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGC<br>TGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATC<br>TAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTT<br>TATTGCGGCACTATTCACAATAGCAGAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAA<br>TACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAA<br>CCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCG<br>GGGGAGGGGGGAGGAATAGCATTGGGAGATATACCTAATGGTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTA<br>ACCTGCACAATGTGCACATGGTACCCTAAAACTTAGGGTATGTTTCCCCAAAAAAAAAAAAGAATAAGAATAAAGAATCTCATTGCCCCCATAAAAAAAA<br>AAAAA</font><font color="green"><u>GAAAAGGTAA</u></font>acgacaaatgttttgtcagactaagaaaaaaagagaaaattcacatataatcagagatgaaaaaggatatactatgatagactct<br>agagaaatataaggaaccatgagtaagtactacaaacaattatatgccaataaattgaaaaacttagaagaaatacgtacgctcgtggacacatataccc<br>tatcaaaattgaagaaagaagaaatagaaaatgtgaacacaccaatgacaactaatgagattgaaggagcgatttaggctctcagtcaaggaaaatccaa<br>aagacttcacacagtagctcacacctgtaatctcacagtttaggagcccaaggcaggagaatcaccagaggccaggagttcaagattagcctgggcaaca<br>caatg	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr18	67768252	67768253	2000045	0	-	Druze49; RIP_L1_chr18_067_01	ACATTTGCTTCTCAGTTTCC	ATCAGATCCTACAGCAGAAA	LINE	L1	Ta-1	actggcattgtaataagcctggggatgcagtggcccctggacagtggctctaccagtagtgcactaaacaggctttaagaaaaaagctgtagctggagga<br>gtgaccctttccaccatgtctccgcagagctacatgctctgacttttatctcataatgtttttctggttttatacatttgcttctcagtttccattattg<br>ggctgattttcttcaccctgttctgtctgtcatcccatgggagtgcttttcaattccgtttattcagcaaatctgtttacagtacatttaaacactctct<br>catgttggacacttggaaaaaaaatcatcctgttttatgttaccacagtgcttgtgattcttctctgagttataaaaccaatctttgcaaaaaatgtgtt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>gaaatttaaacacaaagtgggtcacctctaaaactatagaatactgcttcaaaaataaaatgcatttaataaactcattt<br>aagtactactctggcagtcaacttgttaatatggcaaatatagagatggaaatcagacgatgccaatactggcattgtaataagcccagggatgcagtgg<br>cccctggacagtttgataagcactttctgctgtaggatctgatgccatgggaggattggacaaagagacacattaagaaacagtaaaataaatgctagga<br>ttgtacatcagctgatatttttatgtttcctaaaaaatctcttgtctgattcctcctaatcaaagagtcttttatatttatatcctcctttagaaatagg<br>aagggattaggcatcacttc	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	50/48	NA	NA	NA	intergenic	
0	chr3	187854801	187854802	2000046	0	-	Druze50; RIP_L1_chr3_187_01	CAGCTAAGGCTCCTAATG	ATGGCTCTTTGAACTCAATG	LINE	L1	Ta-1	tgaagagcaagcaaagtcagcattgccagatgcttgaaagtgtaagtaaaagtgaacagaaattttttttttaatttaaaataaaagattgttagggaac<br>accaagtcagtgggttatgggaaaagagatagattcacattactgtgacctaaggaatgaagaggtggtggggaagtggcaagcatgggaacaatctagt<br>ttttcacgaattaagccatggaaagacaaaggaggtggtagatagaaggagaaacaaagtctgaggcccttccccatccttttaccagtagagaagggcc<br>ttatagaacaccccttgggaaaccccagctaaggctcctaatggtttctctctgtttgcctcaggcccatcctttgattttctctgcctggtcttgtctc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ccaggctggctccagggaattgaataacccaggctctccctgctggctagtttaccattgagttcaaagagccattggga<br>ggaggagattggaaggaaacaggaagggagggagaggggagggtgcttattccctgctccttctcgttccagcaccgggttctgcaggggctgcatccct<br>ccaccagggcggcttctgcagggcggcttctccacaggatagttccaacagagcggggaagctagccactcctgctcctgctcagcctcgggtggcaaag<br>gctgtccaggtgcctcagcatcccttggccttcccttagcctgggcaacaagccttcactaaaggtcccttcactgaagtctttttctttttttgagatg<br>gcgtctagctctgttaccca	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr13	47754437	47754438	2000047	0	+	Druze52; RIP_L1_chr13_047_01	CCTGTCATATAACTCCTTGA	TTATCAGTGTTCTTTCCTGG	LINE	L1	Ta-1	agaaggattttatttctcttatctgctccatctcttcttagtttaaatcccattgaacctccaacttagataatattagattcacccttcctttattgaa<br>acatatagtgcacgaataatcctaaattgttgggttgaattggaaatggatgggaggcaagagatgtcacagcattttcctttcctggcagtaaagtttt<br>atcagtgttctttcctggtggcgtggctagaaatggcaaccaagaaagtgactcagtttacccctgattttcagtttgtactgggggcagtgagtgggag<br>tcccacctctatctgcacttaatgctgtttgacttgggcagcactttccatacttgccacctccccatgtcctccaaacctcccaacaatctgatagaaa<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tcatctgttctccatcattttcaccaggaagctaggacagtggctcaaagtgtaaactgaaggtccctgagattccctga<br>gatccttacagggagccattgaggtcagaactatttcttgatgagttaagatattatttccgtttttcatttttattatctcaagtatgcaatggagttt<br>ttcaaggagttatatgacaggtgatattgcaactcattgaatgcagaagacataagaatccagctgtcttccacttagagattttctaaaataagatgtg<br>actctcactaaatgtttttattttggaacgaattcataaaactatgtcatttttgctaacatgtaatgggcttactattgttattttaattaaattgata<br>aatatatatttaaaatgttc	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr4	175968306	175968307	2000048	0	-	Druze53; RIP_L1_chr4_176_01	ACAGGGATTTAGAATGTAAC	AGAACAAATTCTCAAGGCAA	LINE	L1	Ta-1	agaaaagaaagactatcccttcccagaaggaagctaggagcaacaatacctatgagaaacattttatagcttgagatttattttaagaaatcaactgcta<br>tttcacggatttgacaaaggaaagtaatattgacaaactatttccctgaaatgctgctacagggatttagaatgtaactggcatttttttaaagcttgtg<br>tatgaagctgctactgtggtaattgatatataaccacaaacttgcatttataattttgactctaatcattatagccatttaattaaaatggatttcaaag<br>tctttatgtggatttaatttcacttacaattacttaggtaatacataattatgtcttcaatataaaaatccaaatattttggataaatgaaaagtttccc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ttggttgccaacactgtcttagttcccttcttggagataatgactgaaatcatttaatatgtttctttccagattatatt<br>ttatatatttctacaaatatatgtgaccacaaataaatacatatgtatataatatatatatatttaagaaaaatgttccaattaggggattaatactact<br>tatccattccatgtgtttcctttactttgaaggggagagagttgccttgagaatttgttcttgcctctccccaccgctaatccattctgccacagaatag<br>agaagtgaatattctgttgaggaggtttctagtccagcatcttttgtttcctttcctctcacttctgattgtcctttgctctgttcttctctaactgctc<br>ctttcttccaaaatagcatg	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intron:GLRA3:NM:001042543:1/9	
0	chr5	34183704	34189726	2000049	0	+	Druze54; RIP_L1_chr5_034_01	CTCTCATTGGTATTAGATAG	CTAAACTAAAAGTTGAAATTAA	LINE	L1	L1HS	gaaaatgtggtataaatacattatggagtactacagagccatagaaaaaagaacgaaatcaggtcctttgcagaaacatggttgcagctggtggtcataa<br>tactaagcaaattagtgcaggaacacaaaaccaaatatggcatgtcctcacttataagtgggaaataaatactgagcacacatgggcataaacatgggaa<br>aaagagacactgtggactactagatggggtagaaaaaaagagtggtgtgaattgaaaaactacttatcatgtactatgcttactacctgggtgatgtgat<br>gcataccccaaacctcagcatcacacaacagattcgtgtaacagacttgtatatgtaccctcatatctaaactaaaagttgaaatt<font color="green"><u>AAAAACAAAAACAA<br></u></font><font color="red">GGGCGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCATGCGCGAGCCGAAGCAGGGCAAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTTGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGTGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGTGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGAGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCGATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATGAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTAACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACGAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAAT<br>TGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAA<br>GACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>AAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTG<br>GTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTT<br>TATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGGAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTGCAAAACACCAAAAGCAATGGCAACAAAAGCC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACAATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACAC<br>TTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>CATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGG<br>TGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG<br>ATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAA<br>AACTTAGAGTATAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAAAACAA</u></font>aagcaaaacaaagcaaactaactaggtgagattatagatgtgttaactgacttgattgttgtt<br>atcatttcacataatatacacataccaaataattagatagtatagattaatcacataatttttgaattatactttattaaacctgcaaaataaaaaaaaa<br>aaatgtcatttggtataaataatgcaaggtctatctatctaataccaatgagagttgtttcctattaagtatagagtttttgtgaattattatggaattt<br>ttcctgcatttattgtgaagtagtagtaatcatcggaaattgaaatttgttaatatttttacttttgaacatattttggaaatggaaagtataacgagtt<br>tttttcttcttataattaatcgc	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	42/48	NA	NA	NA	intergenic	
0	chr1	216312262	216313112	2000050	0	+	Druze56; RIP_L1_chr1_214_01	CATCAATGTAACCATTCATC	TATAGAAAGCTTACCATGGC	LINE	L1	L1HS	gcctgtaatcccagctactctggaggctgaggcaggagaattgcttgaacccagctactctggaagctgaggcaggagaattgcttgaacccagtgagcc<br>gagatcataccattgcactccagcctgggcaagaagagggaaactgtctcaaaaaaaaaaaaaaagaaagaaagaaagaaagaaaagaaaaaaaacatga<br>atgactagggaactctatcatatccttacctgagttacttctttgcactctacttaaggtcaaaacaatgatatagaggaaagaggaacaacaaggcaat<br>ccataattcctttttttagtttagtgcttcttttcctatcaccactaagccaaagataggatagaaaatgataatagaacatatttgtat<font color="green"><u>AAAAAAAGAA<br></u></font><font color="red">CAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAGACATGAAGAAATGCTCATCATCA<br>CTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGA<br>GAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGA<br>ACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATT<br>GCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACT<br>ATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAA<br>ACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGG<br>AGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCT<br>GCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAGAA</u></font>ataaaaacatttgagtttgttttgacagtttccactgtt<br>ccagtaagaagaaaagacatgaatgtttgagctgtgaaatataaaatatgtaattttgatgagtctgcatataattaaatgcttttgtattcaaatttaa<br>agttggtattgcacaacataaggatgaatggttacattgatgctgataattaaaaattttcatttttctttacttagaatgacatttaatagcaaataaa<br>tagcatcacaacaagtcaagagagagaccatggaagacaagaagaagtttgatgttttagtgccttcaacatcactgttttctctgctttgtgaaaaggg<br>agccctgcatttttattttgcactgagccctgcaaattgtataactaaccc	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr12	33216925	33216926	2000051	0	+	Druze57; RIP_L1_chr12_033_01	ATAGAGCAGTACTCATGAGA	TGCAACCACAATCTACTAGA	LINE	L1	Ta-1	aagaagctctttttacccgggaaaaaagatgttatagagatagagcagtactcatgagactttgagcaaatgatgtatgagtcttacccactcttattca<br>tagtctaggacagaaaatacaaaatagtctaagaaaatgtaatgagatttatatttgaaattgcctctttcattagaactaaggtgtgttgatgctagtg<br>ttttcttgatctttatagaacttatcagtggaagaatttaaaaaaattgtttcatgaatgttacatagttaacagcaattgtactaatgccattgattcc<br>aaaatgtattccaaattcaaaaagataaaataggaaaaaacaacataaatcttagaattggtgaagtatataggtgatttgaatgttattggaagggcta<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>aaataattaggttctcagttgggtctctaagaaaatttgcaggacgatatactgctagtccactgagaatgcttctacct<br>ccgatatcacacttaagagttatgcttagaagtaggaagctactgtcaccactatacttgcttttcatacttagaaaactagaaaatgaacactgaaatt<br>ctgttcaaggaagatgcacagttccaaacttttttggtcaagaaacaccagctaatagtcatagaagataacatctgccttatgtttatttttccagtct<br>cacaagagttcatctaattggtggaacctaatttgcatcaagaacccttgcttcaagggagtctagtagattgtggttgcAGCTTCTAACCTTTTTAATT<br>ATAAGTATAGAATGGGGATT	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	50/48	NA	NA	NA	intergenic	
0	chr4	137434104	137440151	2000052	0	-	AC018680; Druze58; RIP_L1_chr4_137_01	TACCTAATACATCTTCTGCC	AAGTCAGTTGCAACAATGG	LINE	L1	L1HS	tggaacttgcagcaatctcacttgtgtatactaaaataggagaaaaatcttatgaaactacaggaaggtttttgcttagctttctctcaaaatgacagaa<br>taagttgttgatgctttttgtctctgcctgcctctgagttatgaaaatagcattttcaatttcgcacattatctcttcagctatcacgaacaatgcggtc<br>cattttcctcaagttccttgtcatcagcaacacctggaagcaagttgaaatttagattgttttgctttgttttatttatgtttacttagaatgttacact<br>tttccgacaaagaattctttaaaatctaagatcacattcaaataggtaagctatttctacttcttttaaagttaagtataacatc<font color="green"><u>AAAATTAATAGAACA<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCATGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACAGCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAA</font><font color="green"><u>AAAATTAATAGAACA</u></font>acaggtggtttgtgcctcatcaccatagaaaaagtga<br>aatattagctgtgcatacattacaaaataaatctaataataattaatctaaggcaaaatgaatgatggcagaagatgtattaggtaaaatagttttagaa<br>aatgtgtaaaatgaaaaaggaatacctttaaatgtttgaaattcagaagtattaggtcagattctcccaagctgtattctctaaattgctttagatttta<br>tactttagtctttctcccagccttcctgaaaggggacccagtagacatttacctatgttgattttgcattagagaaagggaaataggctgggcatgatgg<br>ctcattcctgtaatcccagcactttgggaagctgaggcaggtgaatca	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	50/48	NA	NA	NA	intergenic	
0	chr12	41543253	41543254	2000053	0	-	Druze60; AF417153;1104685300946; RIP_L1_chr12_041_01	TTTATCCTCAAATACTTGTC;TTTGATGCTTATTGGCAAACC	ATAAGTGACATAATACAGGC;TTTCACCTCTCACACTGAAAAA	LINE	L1	Ta-1	atatgctttctttcctaatgttcttggaatgtttaccaaaacatgtaaaataaaatgctataaagaaaacttcaaaacttccaataagtgacataataca<br>ggcttcattacgtgactctatttttaaaaaagtttaaacattaattatacaattagcaattttaaaatataaataacttgagttgaaagaaaatcaaaat<br>tcttagtataagctatttagaaaatagcagtgggaactatccatcaaaacggatggcaaaagctgccctcagagaaaaatttatagctttagggagttta<br>ttaataaagaataaatgaaaataagcaaaatattcaactcaaaactctaagaaaattaaattagacatctaatatttcacctctcacactgaaaaatatt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACTATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAA</font><font color="green"><u>nnnnn</u></font>aaaa<br>agaattaaaatacttattactgacaagtatttgaggataaaaatactattgagaattctataaataggtacaaatctcctgaggtttgccaataagcatc<br>aaaatccctagcacttctatttctacaagtttattctaatgatagatttgctcaaagatacatatagctttgttttgttttgagacagagtctcactcta<br>tcaccaacgctggagtgcagtggcatgatcactgctcactgcaacctcaacctccctggagggctcaggtgatcctcccacttcagacttccaagtagct<br>ggaactacaggtgcacgccaccacacccagctaatttttgtattttttgtagagacagggttttgccatgttgcccaggctggtctcaaaactcct	Other;Venter	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	 TSD unavailable;NA	48/48;55	NA;1292	NA;133	NA;NA	intergenic	
0	chr11	57928326	57928327	2000054	0	+	Druze61; RIP_L1_chr11_057_01	TCAAGATTTCAAAGCTCACC	TGTCTCCTTTGGTACAAACT	LINE	L1	Ta-1	gcacaggaggttgagtaacatattcatatttatacaagtattaaatggcaagccatgctttggacccataccaacttttgaacccatgctgaatggttcc<br>taaatctaatggtctaaactgaatttaaatcaaattgaatacaactgtatttacaatcactcattgtctcctttggtacaaactcagtgttttgagtttc<br>acaatgaagtaagcaagtaatatatgcttagtaaatgggctggggtaacagggttgtttggggcatgttcaactaccagaaacaattctgagagaagcct<br>atcaccaaacagagcagatacagagcttgagttcttgaaagagttgcgtatcagtccacgacttaccacctgggaatcactggttctaatctaattccct<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>taaacatcacattttcttctgtaacactaaaacagtaatgtgacctactttgaggtattattgtgagaattaaataagat<br>aatccattaaaaatgctagatgttaagcacagcctaatgagtgctagttataatattaaatattattattagataggtgataatctttttgttggtttga<br>taaaggtggatggtgacaagcagggctgcaggcatgggtgagctttgaaatcttgaagctcccacctccaattttcttttcctccatgctaggaccactg<br>agattttctgtgttcttcagtgattttcaggttgttcttcctccaagcaaatgattgtctgctccggaagattcacatgagcctttctttttcttaattt<br>ctcccttgaaatccacattt	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	promoter:OR5B3:NM:001005469	
0	chr6	63425742	63425743	2000055	0	+	Druze64; RIP_L1_chr6_063_01	TGCATACTTTTAGGCTAGAA	GTGTCTAGACTTTAGCATTC	LINE	L1	Ta-1	accaatcaaattttttcctaaataaataatgtgtgtattgctgctttgcaaaactaatgcaccttctgaattatgaaatatataattttactgagagaaa<br>aatgaatagctgataacactgctaaggtttattgactgattttcatgtgccaagatgcactttgctaagcactttacatgaattataatatcttgggtag<br>ttctctcaaaaacttttacaaaataggtattgatattatttataattacattttaagaatttgaagcaccagaggagttaagtaacttgtcagaagtcat<br>aaagctggaaaagtcttgggtgataaataaaacccaggtctgagatttcaaaaatctaggttccagaacaacactgctcctcagtgatattttagtcaca<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>atttaagcatacatctttaaatgctaaagtttaggggtcagcaaactggcctatgcttcaaatacagcctgttgcttgtt<br>ttggaagttaacacttcatggaaacacagttccacctattggtttacatgtgcctaaggttgtttcattacaacatagttgagtaattgtacctgagacc<br>acatggctcacaaagcctaaatattcactatttgatcctttacaagaacagtttgctgatctgtgctttagacttttaatttgaaatttgaaatccatgt<br>catgttctcagatatttactacactttctgtttctatcaatttggaaatatttaatatggttggagtaataattacatatttaacaaatacatcaaaatt<br>atttgatagaagcctaagtc	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr6	108893768	108893769	2000056	0	+	Druze65; RIP_L1_chr6_108_01	CCCTAGAGTCATAGAGTCA	TGACTTCAATATAAGTTGCC	LINE	L1	Ta-1	gctgaccttaggtcttatgtcccaaataccagatttttaaaaatgagataatcctggtccttctttagagcctcacaagcatggatatatttctgaatag<br>agatttttagtgtaaggcaatgttactatctttttaaatggtttcactacagaactaacaagagggccctagagtcatagagtcactgctgctgctgctg<br>ctgctgctgctaaagtttttacaataaagttgtgttcttaaattttcctactttaaaaagtgaagatatcttgaagcacgggttttaaaattttatgtgt<br>atcatgacaattgagaaaatgtttctagattaactattttgtttatttttaatttttaattagttcttttaatttaatttaacttttttaaagagttatg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tttaacactttaaaacatagtgacacttttttaaagtgtcactatgttgcccaggctggcctcaaactcctgggctcaag<br>tgatcctcttgactcagcctccctagtagctgagactataggcatgagtcactacactatggattaagtcttttgttaaattaaattacatttgtgtttt<br>tatgcccaatccttgttaaaaaataaacttgaggcaacttatattgaagtcatttataatttatccaccataatcactaaaatggaagagatggaaaatg<br>ccaagtattggcaaggatgtggagaaaatggaactcttttttgtatcactggtgggagtataaattgctacaaccaattggaaaactggcaacatctcct<br>acactgaacataggtatacc	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intron:LACE1:NM:145315:8/13	
0	chr3	89592670	89598696	2000057	0	-	L1HS508; Druze66; RIP_L1_chr3_089_01;AC213268	GAATCGAATATGCCGAATAC;NA	TTTGAAGTTATAGCCGTTAC;NA	LINE	L1	L1HS	agaatagtaatatattttttccgtacattttataactgttttttaaaatttcaaatgtttccccaatgtatttcagggggaaaatcttatatttgccaat<br>ttattttaatgttgattgccgatgaccttgatctttatcactaaaattaaaaatccagatacgataaaatgaatttaatttttcatcagtaactaaaaat<br>aattttgaatatatacagttcccaacaggaacctagtacataaatgacacattaaggagaaataaagtcattgtgtttattttaattatctctaggcctt<br>aaggacaaaaatctttgaagttatagccgttacacctggtttaattcctccgtgtggtaaaattagctgttttgattttaagatt<font color="green"><u>AAAAAAGAGAGACAG<br></u></font><font color="red">GAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCATAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACAAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAGTCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACAGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAATAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTCCAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCTTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCTCAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAATAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAA</font><font color="green"><u>AAAAAAGAGAGACAG</u></font>agagatcacttgggtattcggcatattcgattccctctaaaaggttctgtatcatatt<br>tattcactgagcaaagtcaccctgtcagtttcagaatttgaggtcaaagtcattttgagaaataaaggcagattgtcttttggttgttcgatttgtcttg<br>aaggatatggtatttgtcaaaacagcagttattctcaaaaagaattctattatgtactcttagagatcagaagctttttactaatacttgtttattttca<br>ttaactggggaaaatatgagtattgtttatttttactcctttctatgctgcaagttaataaaaataaatcccttcaaagttagtgatcaatgcaatgaaa<br>caatatatttaaaaacatttcaattaa	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	58;NA	6144;NA	103;NA	NA;NA	intron:EPHA3:NM:005233:15/17;intron:EPHA3:NM:005233:15/17	
0	chr6	148237282	148237283	2000058	0	+	Druze67; RIP_L1_chr6_148_01	TGCTGTGAGTTCTGATTATG	TTATGGCTTCACAGTTTAGG	LINE	L1	Ta-1	gtctcagctactgtctgcttttagtgaacatgatactatgcttacttaattgctcaaaaaactttaggcaatgctaagcaagaatagaaggctttttcct<br>agggtggggaaacaggctgattggctttacttccttaattatggcttcacagtttaggcattacagaaatattacatatctgactcttaaggtctttacc<br>catttcatattagatcttagatttcttcatcccattattgatctaaaatgtctctagctctctcgggtaaaggaagaacatgcccatgtgttgcattagg<br>taattcctattattgaaaagctgtgttcaatctaaaatgaccttttcttggattttttgtcaagctagctttgcaacccatattaaattgaagcttttgt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>atgaggaccgagaagcccgttgttgcgtgggcaatgacattcttagggtgtttgctcaggacagccggccctccggccag<br>ctggtggcaggagctggagcatttggccgagtagtcattgctgctttttttaagtccacagcaaagacagggcattgggtctgaatttggactataaaga<br>aggatggacaagtgctatgcaaagaaaaagttcatctgtgaagaggatctctgtgctttcataatcagaactcacagcatcagtacttttgaagatgtcg<br>aacaagaattttgggaggggcagcatggagatttggacttttcacaaaaataaatttgataatcagcattggttttactttaattttagtggtcctttat<br>gattgtacatgtttatagtg	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr13	60360442	60360443	2000059	0	-	Druze69; RIP_L1_chr13_060_01	ACTACTTGGAAAGTTAGTTC	CACTAGTGTTTCCTAGAATG	LINE	L1	Ta-1	ttattttagcaacgtaaatgtcatacacactgggatttaacacagagcactttaaattccttgatacaacagctgttatcctcatttttagctgaagctc<br>aggtaaattaaatgcttattatataaggattcaaggaaagggatacgactttttaaaaatcttcatgtctaaatttaaatacttaaatattaagagaatt<br>tgagtttctttcttagttcatcatttcatgtctaattctcactagtgtttcctagaatgtaaaaattcagcatgttggggaccacaactaaattttccag<br>ataccccagaaataaatggccagagtgatctttgaaaatcgaaaaatgtggcagcaaccatcatcttctgcatttctcctttctgagatttcatagaacc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ccaaagagaacaataaaataagcttaaaacttcctctcactccactttaaatctaatattttatctaatgctggaacagt<br>gtcacacaggttatataaaaaagagaagaaagctattccaccattgtagagcactctagaactaactttccaagtagtaaatatccaggtcttagactat<br>taattattgcaaagaaaagaagaaactcattcattaaactttctatggttatcaacttaaatcaaccacatgccaaacgtcgtgctaagaactagacatt<br>tctgtgctttctactcaaggaatccaatgtagtaaaagaaacaggtgtgaacaaataatgtgatgtagtgtgatgagtgttatgacattggcctgcaaag<br>gaaaccaagaaattgtgtaa	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr4	59317142	59317143	2000060	0	+	Druze70; RIP_L1_chr4_059_01	GCCTGTCATAAAGTTGTCAT	GCTGGTTAAGTCATATAAAC	LINE	L1	Ta-1	tacaatcgtataatacctgccttgtgcctgcaatgcataccaataataaatcacattttgtggtaaaattactgtcaaaacttcatagaataatggtcat<br>tatgtcaaaaaaatagactaagcaataaatttctacacaattgtgataatacttaatcaggtgaaaatacacatacatatatgtatttatacatatacac<br>ataaatgtatatatacccatatatatatgcacaaacacacacaaaagctggttaagtcatataaacatgagaataaaaaaatacagagaaaatatagaaa<br>caaacatagaaatatgtaaaagacatcaacagtcaatttataaaaatgcaaaatgatgaataaacaaatatattttattattactaataaataataaatt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tcagaagctagacttattttggctaataagattagcaatatttaaaatgtatttttagaaaatacagatgacagtgtcac<br>tttgtagacaatttttgtataataacagggatatatactagcacaattttttgatgacaactttgtgacaggcctgcaaatgtgatatatggatgtcttt<br>agacccagaattttacttctgagaatgtgacttaaggaaaaaattaggtaaatgtacaaagatggattgcaaggatgttcatcatgatgttggacaaata<br>gccccatgttgtcttttgaaaaggagtaaattatgtcaaattacatagtgaaatattaaaagaatattgaaataatgatacccagtcagtcctataacac<br>acatttataacatttactaa	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr5	108622989	108629020	2000061	0	+	L1HS158; Druze71; 238563; RIP_L1_chr5_108_01;AC216137	GCTGCTTAGATATCTGATTG;NA	ACAGCGTGAAGTTCCTTATT;NA	LINE	L1	L1HS	ctgttagaggatggtcacagagttcttggaaaaaaacctcactgaatggaaagccaaaggaaactcaaaaggcttgttgatcttgacgtaagcacatgac<br>tgattcccttaggagtctcccagaaataactagaggagtgagaaggaagagggatcatgcccatgtgtgaaggtgaagccacggcctatgaaatgtgagt<br>ttttgttaatatgacctaagctgagactgggcaacctagagagctggggtcccattctcctgaaatcctcgagccatgagcagtggaggcttacataaga<br>gcatctgccagaacgtcagccagcccagagtagttcatgtttttgtaatttgagttttaattccacaagtaaaatatttctcttt<font color="green"><u>AAGAAATAAGAATGG<br></u></font><font color="red">AGGGAGGAGCCAAAATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAAAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAAGTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATCTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCCCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCACTGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGACCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATAAGAATGG</u></font>tgtctcattttatttttgagtagtgactttccaaacaatcagatatctaagca<br>gctccttttccttcttcctccaggctgtccaccatcgcctttcccttagcttccatctttccttgtgacatgaggaattgctgaggatttagatcactac<br>aaactcagcacttcaactttcctcaggggacaatttggcaggttgagccctttttgacccatttttagccattgatttctgatgcatcctttcttcttgt<br>cataactggggaaatgtcaggacctttgttttgaaatctaaatggcactatctttcaaggttgataatatcttcaaggtggaattgggaacattgcgtgc<br>ttgccttaattgtacccagactcccaggttgg	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	59;NA	6194;NA	147;NA	NA;NA	intergenic;intergenic	
0	chr11	78066470	78072495	2000062	0	-	Druze72; RIP_L1_chr11_078_01	AAACATTCTAACTTAGATTC	AGCACAAATCCAGAGATAGT	LINE	L1	L1HS	aatctctgtgccatagtgcctctcacagcacgcactcaaatattggagaatttgttcattaacggagcagtgactcccacacccctcagctgcaagacca<br>ctgaggaggcccatagaaaggctgaggggtgtacaggacagggagtcatacattctggccagtggaacaggggaagcttctggaaagagatgacatttta<br>gcagagcctggagggagtcttaagccagcacttactgaagacgggggcagtgcagaggaaacagccaaggaagggccagagacaggagagtgcagcacaa<br>atccagagatagtattttcatctatagaaagaaactctatgtgtattttacagctgaaatttgcttttttcaccgtaagtttcatttagtt<font color="green"><u>AAGAATCTA<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGATGGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATAGCCCAGGCTCGCTTAGGTAAACAAAGCAGCCGCGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACGTCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGGTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCGCCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAATCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTCGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGTAGAAAAGGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAGCAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCAGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAA</font><font color="green"><u>AAGAATCTA</u></font>agttagaatgttttaaatcaaatttaaaatttcaaatcatatgtatatttaaatcattgtcatat<br>gcctgtgacaatgatttaaaatatgtttatatttatgtatttttttttgtcattctgtcagtggtttaagtgtcaaagttatttttcaccttgttataaa<br>aaacattgttaccttagagtgtatcaagagccttaaaaatgttcaacctgccaggtatggtggctcacacttgtaatcccattgcttttggaggctaagg<br>tggaaggattgcttgagcccaggagttcaagacctgcctggtcaaatattgaaacctggtctctacaaaatatttcaaaaattagccgggtgtggtgatg<br>catgcctatagtcctagctacttggg	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intron:ODZ4:NM:001098816:29/34	
0	chr12	83479436	83479437	2000063	0	-	Druze73; RIP_L1_chr12_083_01	CATCTCCATATGTTAACAGA	AAACCTTGTAGAAGCATGAG	LINE	L1	Ta-1	cttcagtttgatctcgaggctaatatttaaacagactgaatgattaagagatgctcagcatcaagaatattaatttcctcaaactttggatattattgat<br>ctgtttaaatgttgactttccgttaaatatttctttcaaaatgtcttcaaaatacctttcctttattttgtgaaattacagatgttctaacatattccac<br>tttatttattctttcgctaaaccttgtagaagcatgagctatagcttataaaattattaatttccatggtaagtagaatgaaggtagaatttaattttaa<br>tgaagcctagtgtaacaaacattccactccagtgaaatcttacaaagtaccagctggaaaacagctgtgtcccatgctctttgactgttgtgaaatctta<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ctacaaccaaataaaacagatgcatccttgaaagttttgatgaactttgtaaatcttcagatcaggtctttcatacttta<br>tattagttaaaaggcaaaaaagtttcattctatttggaagttcattagcttctctttgaggctctgccaagaattcagttctctgttaacatatggagat<br>gataccacatttgcctgtttgggtactagtgtcattccttcaatgtagataaccaaatacatcagcactgtttacatcaaaacacactctttattaaaat<br>gtataagcacaaatatataatcatacatcataaagaagcacaaattcagaaactaatgctttagttaatggaggttcctctttgttaaaaattcagatga<br>gtaattcaacagcctcaaaa	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr6	32697490	32697491	2000064	0	+	Druze74; RIP_L1_chr6_032_01	TGGTAATTGGAGTTACCATC	GCAGTTCTGCAGTCATATTT	LINE	L1	Ta-1	agaatcacttaatagactgcagcagatctcccttgaccaaccccccgaaaccagtcaaattcttcattttccccaaagtgaggactcccacattaagaag<br>ccctcagtactgagataactagcagatacatttttccattgcaagggtggtcttgatgcagggccagcaaacctcaaaattggggctttgcccaagagtg<br>ttcttggcttcactagggaaagattccaaggatgagacagtggtgttagacagcaaattttatggaactaagctactccttgaagagcagggttacccca<br>tagacagtgtgcccagaatagtagctcagaggcagttctgcagtcatatttatacccacttttaattatatacaaattaagaggtggactatgcagaagt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ttctagaaatagggtagaaatttctgcataatccaccccttaatttatagatggtaactccaattaccacttcaatgacc<br>ccagtgggtcattattgccatggaaagaagtggtaacctctgggtgttgccatggcaatggtaaactgacatggcaaactggtaggcatgtcttatggag<br>aggtgcttctgccccatccctgttttagttaatttgatctggtgtctgagccccacctactacttcagtcttgtgacccccagattccccagttgataag<br>aagatgcgtgagtaaaggaggaaattgagagatgcttcctttcagtgtccaagtgtcaaaaaggattcctagtcttaattaaaatttagatataagaaat<br>ctactgaaagaaagtgatta	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/45	NA	NA	NA	intergenic	
0	chr5	151436624	151442640	2000065	0	+	L1HS446; Druze75; RIP_L1_chr5_151_01	ACAGCGTACAAGCTAAGTTA	CATCACATGTCATCTGAACA	LINE	L1	L1HS	acatccttgatgtaattctcttaacttagatagatgctattatgcctactttataggttaggaaaaagtaattcatttgtccaaagtcacacagctagta<br>aatcttggggtctggactgaaagcaattcttttccaaaaccattttctttttaaaatgtatacctaactgagttgtgggtatcacttctgtttcaggagc<br>aaggcatgagaagctctatctttgcaaataatttgctttggataaagctatttcttttgcagaagcatcacatgtcatctgaacatttaaaaaatatttt<br>ttgtgtctcttagaaattctcgtgacatttccatcatatagcctttagatagtgtggtcttcaaaattagatagtgtggtctt<font color="green"><u>CAAAATTACATGGTGGA<br></u></font><font color="red">GCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCAGGTTCATCTCACTAGGGAGTGCCAGACA<br>GTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTC<br>CGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAG<br>ACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCCAGGCGGCAACGAGGCT<br>GGGGGAGGGGCGCCCGCCATAGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCC<br>TGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAATGTCCCTGTCTGACAGCTTTGAAGA<br>GAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAATTGGG<br>AGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTCCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACC<br>AGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAA<br>CTGGAAACTCTAAAACGCAGAGTGCCTCTCCTCCTCCAAAGGAATGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCT<br>GAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAA<br>TGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGA<br>GCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAA<br>TGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGGGGAGAATGGAACCAAGTTGGAA<br>AACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCT<br>CGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCT<br>CAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAAT<br>TTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTACAGACAAGCAAATGATGAGAGATTTTGTCACCA<br>CCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCACTGCAAAATCATGCCAAAATGTAAAGACCATC<br>GAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATA<br>AATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCA<br>GAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAAC<br>AGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTAT<br>GCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCC<br>CACTGTCAACATTAGACAGATCAACAAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAG<br>AACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGC<br>AAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTA<br>CATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAATGAGAACAAAGACAC<br>CACATACCAGAATCTCTGTGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCCACAAGAGAAAGCAGGAAAGATCCAAAATTGAC<br>ACCCTAACATCACAATTAAAAGAACTAGAGAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGG<br>AAATAGAGACACAAAAAACCCTTCAAAAACTCAATGAATCCAGGAGCTGGTTTTTCGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAA<br>GAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTAC<br>AAACACCTCTACGCATATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTC<br>TGAATAGACCAATAACAGGATCTGAAATTGTGGCAATAATCAATAGCTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCAAATTCTACCA<br>GAGGTACAAGGAGGAGCTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGATGCCAGCATCATT<br>CTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAATATTGATGCAAAAAATCCTCAATAAAATACTGGCA<br>AACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATG<br>TAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAA<br>AACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAGACTG<br>GAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGG<br>AGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGC<br>CCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCCTATACACCAACAACAGACAA<br>ACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGAACCTCTTCA<br>AGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAAT<br>GGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATA<br>TGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTA<br>CAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCT<br>GATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAA<br>CTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAG<br>GCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAA<br>ACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGG<br>CTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAA<br>AAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCAC<br>ACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAA<br>CTAGTTCAACCATTGTGGAAGTCAGTGTGGTGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAA<br>ATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAAC<br>AATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATG<br>AAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATG<br>GACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATT<br>AGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CAAAATTACATGGTGGA</u></font>cacttacaacccttaggtgacttaaaagaaaagctttactgagatataatttacttataaaatt<br>catccactttaagtatgaaattcaatgattattattatattacagaattgtgcaactgtcacgtaaattgaattcctttggtaacttagtttgtacgctg<br>taacggatcaattatccaagaggatgagagaagtcattgcagatataaggaacgacatgaataaaggtgtcaggatggggacatagagatcatatgaaga<br>ggagtggatagtcctatttggctgggtataaaatgagtaaaaagagaaaaataaataatactagggctgggtaataacaatgaacagatcatttccagag<br>agctggtttggtgggaaga	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	56	6142	109	NA	intergenic	
0	chr5	68299434	68299435	2000066	0	+	Druze76; RIP_L1_chr5_068_01	TAATGTCCCTCTGTAACATT	AGCTACTATCATTATCGTGG	LINE	L1	Ta-1	aagtgctgggattacaagcgtgagccaccatgccccgccctgtctctaattttttaaaaaaaagaatatcaaaatgccagaatgccaggtattcatctgg<br>aattgttccatttataatgattattaacattaaaaagtactcttaagtccattaaaagttcatcatctcatttaatgtccctctgtaacattgatgttat<br>tgttcccattttacagataagaaagctgaggtcacaaaaaggaaagtgactggtccaagttgaaattgatcgtaattagcagagccagaagttgaaacca<br>gttctgttttattataaatccacaccacactttggatcacacatcatcagtggcccaaactctcagctcttgcaaataaaaataaatcaacagtttttag<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tgtcaagtctctgtacaacatgtgctggtccacatttcatgccttggggctagttattgccttgtattaattattatctt<br>tcatgtagactttgcctcctaagtagtaactaaattgctaactctttatagtcaaaaatatgtgttttccatctttgtgccccacacttagaagagcttt<br>ttgcacatttaggtgatttttagatcaccacgataatgatagtagctttctgcctctctagactgcccaacaatctctggacaaatcaggcctctctgcc<br>tataaagatgtgatgcaggctggctgcagtggttcatgagtataatcccagcactttgggaggccaaggcagaaggatcagttggggctaggagttcaag<br>atcagcctgggcaacatagt	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr3	189318164	189318165	2000067	0	+	Druze77; RIP_L1_chr3_189_01	TTTGTGTTAAACTAAACCTG	GCAGAGTACATTCAATCCAA	LINE	L1	Ta-1	ctccacccaagaaggaacctttcaaacctgtgagggagactggagctcttggaggactggggctctacgccaaggatgctcagcctctgcgtggagagga<br>caattttcaaggcatcttccaaccctgagatttcagtgatttgtgttaaactagacctgggaagggtgtttttgtaacttatatttttttattccctaaa<br>acgttcttcagaaaaagccttatcttccttccaatatttcattagcgttcactttcctgtgtttctctgattgttgccctccaggtaaattttgtgctaa<br>atatatgtgacctggctagtgacttggttgtattttttttatttgtttgtttgttttgagacaaagtctcccagactggagtgcagtggcgtgatcttgg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ctcactgcaacttccgcctcccaggttcaagcgattctcctgcctcagcctctggaatagatgggattacgggtgcatat<br>caccacgcccagctaattttgtatttttagtaaagacggggttttgccatgttggccaggctggtctcgacctcctgacctcaggtgatccgcccgcctt<br>ggcctcccaaagcgctgggatcacaggcatgagccacctcacccagctgccttggttgtatttggattgaatgtactctgcgcgtatgtctattcagtgc<br>tccaaacagggctaagtgtttaaataatcatacatagtcactcacattcttggagttttattatagccttattacgtatccatgtttaatagtttaatag<br>tttagtaattatttaataat	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr4	112848364	112848365	2000068	0	+	Druze78; RIP_L1_chr4_112_01	TGTAAGTTATTTTGAGTCTC	TTCAACAAAGTCTGTCATGC	LINE	L1	Ta-1	aatttagaattgttgatttttctcttaactatcctatgtcatagcatcatggtggtaaaacaccaccatcaaactaaaaatcatatacactgcttaaata<br>cttataaactagaaaatatatcataggaaaaatgtgaccactaaattgtttgttgaataacatgcctataaaaagaaaataatttagatttaagctgata<br>gttacatagagtaaaagaaatatttggatgtcctttgagattattcatttcaacaaagtctgtcatgcccaataagtaccaaatgacagtgtgggaacat<br>gtgaaactgaaactggactgttaaagaaatcttagcagaaatatggaaaatcagaatatgaaatgtacaaaccccagctaagtcatagactatcattttc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>attatctgtcacctgacagcagattatctactcctaaactgtgtttaaagtatctcataaacttaaatgatgttaagggc<br>aaatgtttatattaaagtatccataaaaagaactaaatttgtaaaaatgagactcaaaataacttacataattttaatacaaatcatttaaaattgaatt<br>ttgcttagagaagagttttctaaaaaggaataatgaaaaactgtatttatttatgttttttaattattaatttttttttttttgagacagagtccactct<br>gttgcccaggctggagtgcagtggtgcaatctcggttcactgcaacctctgcctgccaggttcaagtgattctcgtacctcagtctcctgagtggcaggg<br>actagaggtgcccaccacca	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr8	5816858	5816859	2000069	0	+	Druze79; RIP_L1_chr8_005_01	CAAAATCTCTTAAAACAACC	ATTGGTCTGAAGTGATGTCA	LINE	L1	Ta-1	aagtatccagacatggtggcaggtcctgtaatcctggctacttgggaggctgaggcaggagaattgcttgaatccatgaggtggaggttgcagtgagcca<br>agattgtgccactgcactccaacctgggcgacatggagtgagactccatctcaaaaaacaaacaagaaagcaagaaagaaaacaaaagaaataacttcaa<br>aatctcttaaaacaaccttaccacctgttttctagtcttaatcttccattctgcagattggcagtactttatgtctatctgctgactgagattatagaat<br>tcctcacacatggctcctgggcgcttgctaaacttgtagttactgaaactccttttcagatttgaaggcgtccctgaacgtggacttctttggcttcatt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ctccccgacctgtgttatattttacaaaaacacctcgagactggctcacccaattgcctctgtgagcgcccctaggaact<br>tgttttgaggctgaatacactccatctatgaccgctctgtttcccggcccttggccaatatagacccaatgtcctcaggttctttcccttctgcgagctg<br>ggtgacatcacttcagaccaatgccctattgtatgttagaaccaaaaagcgtttacatttccattcaagccctcatttctacacggaatttttggtagtc<br>ctcacaaactgctgtcctcctgcttttgtccatctcagtaaatggcagcagtatctaccacattgctgaggatgcaaacctagatatttccctcaattct<br>tcctttataaaaattcctac	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/50	NA	NA	NA	intergenic	
0	chr6	142491804	142491805	2000070	0	-	Druze81; RIP_L1_chr6_142_01	TTTGGTAACTTGTTGCAAAC	AAGAGTCACTACTTCCTTGA	LINE	L1	L1HS	gaggcaccaatacaagggtgtttgctcaaatttgcttgaagtttttagtttcagataaaggagggaaggcgagctcagatttactactactactattagt<br>acaaaaagttgctaacatttattaatcactactatatgccagtactattctaaaccctgggagtaatgtataatcttttggtagacattcttggtgtcct<br>aaaacttctttctgagattaaaaacatttaagaccttgtggtgtaaacaagaaacagggtaaattttgttcagaacccaaaataggatcaaaataaataa<br>aaatgagttaaagcattatgcatgatgattaacacatgcaaattaatgcataaatgttatatattattacattcacatctggtctaattt<font color="green"><u>AATAGTTTGC<br></u></font><font color="red">GAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGGGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCAT<br>CTCACTAGGGAGCGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAG<br>GGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTT<br>AAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAGTCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAAC<br>TGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACC<br>ACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGACTCCACCTCTGGGGGCAGGGCACAGACAGACAAAAAGGCAGCAGTAACCTCTGCAGACTTAAATGTCC<br>CTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACAGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGAC<br>CCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGT<br>TAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACTCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGG<br>GAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATG<br>GAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACT<br>TTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGA<br>AGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGA<br>GAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGG<br>AGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAATGCAGGCCAACGTTCAGATTCAGGAAATACAGAG<br>AATGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGA<br>GAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCA<br>ACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAAT<br>GCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCAT<br>GCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGGAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAA<br>CAATACTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCA<br>GGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCA<br>ATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGC<br>TAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAAT<br>AATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCA<br>GACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACACACTTG<br>GAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACACAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCT<br>CACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGACATAAAGATGTTCTTTGAA<br>ACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGC<br>AGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAA<br>AATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGA<br>CCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAA<br>CTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAA<br>CCAGGAAGAAGTTGAATCTCTGAATAGACGAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGA<br>TTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCAT<br>TTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAAT<br>CCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAAT<br>ATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAACCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTC<br>AACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCAT<br>ACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTG<br>GCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAG<br>AAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGCATAAAAATCACAAGCATTCTT<br>ATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGG<br>GATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAA<br>GAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAA<br>AACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTC<br>AAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGCTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAACGC<br>CGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGC<br>CATATGTAGAAAGCTGAAACTGGATTCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAA<br>ACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGTGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTG<br>ACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAAC<br>CTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAGACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGAC<br>ATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCA<br>CTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACA<br>CTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCA<br>TTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGA<br>ACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATC<br>CTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAAT<br>TGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACC<br>TAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAG<br>AGTATAATAAAAAAAAAAAAAAAA</font><font color="green"><u>AATAGTTTGC</u></font>aacaagttaccaaacattcaaagaagaatgaatactgattcctcttaagctcttctgaaaaattga<br>agaggaacactgccaaactcaatttatgaagccattttcaccctgttgccagagtcagacaaaaacaccacaagaaaactacagggcaacatcccagaag<br>agtacagatgcaaaaaccctccataaaatactagcaaaccaaattcagcaacatagatagaagaataatacaccagtgggatttatctctgagatgcaag<br>gattgcttaatacattgcaaatcagtaaatgtgatataccaacttaacaaaatgaaagacaaaaaccacatgatcatttcaatagatgcagaaagatcat<br>ttgacaaaattcaaaatcaattcc	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr4	58612465	58612466	2000071	0	+	Druze63; RIP_L1_chr4_058_01	CTAGCTTTATTCAAACTCTG	TTGCATGTCTATTTCTCCTG	LINE	L1	Ta-1	caagcagaggataatgctataaatgctatatgaaataattattttgaaatgaatcagtctgggagctttttttgatagagttaggataatttttaaaaat<br>cgcttatgatgacattaacatctagctttattcaaactctgttaaaataaaatctttgaacctaattctcattattatctcccatacctatgtttgattt<br>caatgattgctgctttattcttaatgaaagcaaagtttatggctagtgcatgattgaaatttaaaaataaataagctaaaacagacaaacaaacaaaacg<br>tagagctgtggctgggcacagtggcctcacacttgtaatcccagcactttgagagggcgaggtgggtggatcatgaggtcaggagatcaagaccaccagg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ccaacacggggaaaacccctctctactaaaaatccgaaataattagctgggtgtggtggtgtgcgcctgtagttccagat<br>actctggaggctgaagcaggagaatcgctggaacccaggaggtggaggttgcagtgagccaaggtcttgccactgcactccagcctggtgacacagcaag<br>actccgtctcaaaaaacaaaacaaaaaaatttgagctttgacttctctttttgttttactctgtatctccctgaaaaatcaggagaaatagacatgcaag<br>agattcttcttattcttttccttttggaagaagcttgtcatggggtgtagctttcctgaaattaatgtaactagtcattctgaaaatggtttaatttccc<br>attgtctgggctggcaaaaa	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr4	58582044	58583094	2000072	0	+	Druze82; RIP_L1_chr4_058_02	ATTTCTCAGCATCCTCTGCT	TGGAAGTCAACGTAAACTAG	LINE	L1	Ta-1	ttgggcaaaatagttgcctgattgaaagcaaccaatagagacatctatagaacctcaggtatatagccaatcctgggcttggttccccgtagtttggagg<br>atataaaaacaaacattatatctgttttcctgaatcaataatttttaatcaagtttatagaaacaatactttcacgtgtgtcggacaaagggtaatgaac<br>tgtattctgtaaataggcactttattgttagacataatggaaattgctagattggtggaagtcaacgtaaactagaatagtctagtaaatcttttgaaaa<br>tggagtagggcatagataatcaggaaaaggagacaagtaatgcagtaaaactaaggcatagcatatgaaagcacacaaataatactaaaacctgac<font color="green"><u>AAAT<br></u></font><font color="red">GGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTC<br>ATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAAC<br>AGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACAATGA<br>GATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTG<br>GTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTG<br>GGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAAC<br>CCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGATCATATCCTTTGT<br>AGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACA<br>ATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCACTGGGAGATATACCTAATGC<br>TAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATA<br>ATAAAAACAAAACAAAACAAAACAAAACAAAAAAAAAAAAAAAAAAAAAGA</font><font color="green"><u>AAAT</u></font>ctctcagatttgtttgtggtcagcagaggatgctgagaaatggtc<br>tctcccctaaccaagtctagtgaaattggtgttttgtgtgcttgtttgtttttcttttaccatttaatatcttcctgtctcataaatagtatccaggttt<br>tgataaagaactatcacccatgggcattaaggcaaaccaagtaaacatttataaggagcagttagttcttttcttcctggccttgattttatttactcaa<br>ttaattatttaatcgtaacaaggaacatagtctccctgtgctctcttcatccctttgcagtaatcagcagtgaagggaggcaatgcagtaaatgggctct<br>gtacggaaggataagagaatcatgaataatggttgtttttagtaccatgaa	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr6	46418161	46418162	2000073	0	+	Druze83; RIP_L1_chr6_046_01	GCTATGTTCTATATGTAGGT	TGAGACATCTGGTATAGAAG	LINE	L1	Ta-1	gaaatcacattcctctttgactgagatatgtcttttgagtgtagtgttagagtgtcaagagtagagaaacaagaacctggctatgaaagactggctctag<br>gctcaaggaaaagggacaaagacttttaggttactttcaaagtcaaccagccctggaataggaataagtaaggaaaaagagtatcagggcaaatgctcta<br>ttaaagaatagttattgtgcatttggctggagttttctttgtgctgtgtctctgagacatctggtatagaaggtgaagtggagaaagatgtagaatgcca<br>gtggtggaaacataaatcaccttatcaagaaggaagttttagccaggactggtggctcatgcctgtagtcccagctactcaggaggttgaggtgagagga<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tcacttgaatccagtagtccaaggctgcagtgagctatgattgtgtcactatactccagcctgagtgatagggtgagacc<br>ctgtctcttaaaaaaagaaagaaagaaagaataagccagaagaacacgacctacatatagaacatagcttttctttcaaacccagagatctgatgaaagg<br>aaagcctaaatgaaccaaattccataaagcggtaagcccttcccatgggagcaaaagtacatgtttgctttcatccttggtgtagttgtgggagaaagaa<br>tttgccatagagaggcataaggagaaaccagatgaactcacagaaaacttttatggtttgatgtgggctagaataatggatcagaatcccaaagagtcac<br>agccaaagagtaagtctgta	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr6	133383528	133389578	2000074	0	-	Druze84; RIP_L1_chr6_133_01;AC208158	TTCAGTAAGTTTGCACATAG;NA	TTTGCTACACTATACCTTTG;NA	LINE	L1	L1HS	ataaagaaagaatcaaatggaaaatgtggaatttaaatgacatttatcaagattagaaaatcagtgcataggtataacagcagatttgacctagcaaaag<br>atgaattggtagctgtaaaataagaaaaataaaatatatagaataggaaagagaaaaggagagaggtagagggagaaaagagaaggagaacacagaaaag<br>gtgatacaagatttacaggaaagattaagaattctaatgtattagtatttaaaacatcacaatagaggaaaagagagcaaaagaaatatttgaagagatc<br>attgttgagaactttcaaaaactgatgaaagatattaaactacagattcaagaatgctcacaaactccaagcaatttttttttctt<font color="green"><u>AAAACATCACACCT<br></u></font><font color="red">GAAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACAGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAACGACTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCGAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCAAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCTCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATAGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAGTATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGCCTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAGGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCCCCAGCATGGCACATGTATACATATGTAATTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACATCACACCT</u></font>atgtgcaaacttactgaataaatgagacagaagga<br>tagaatacaaatcttaaaagtagcaagaaaaataagacagttatcttcaaagccacaaaaggtacacagagagctgtcttctcaacaggcaaaaaaataa<br>aagcaagagaatggagtaatatatctataagtctgaggaaaaaacctgctaaggtacaaattttatacccaataaaaatatacttgaagaaggaaggaga<br>agtaagtatttttcagacaaacagaaatcgagagaattacttttctaaacacttgcactaaaggatagtcatcaagcatgaggaaaataagttcagatgg<br>aaggttgggatgcatggagaaatggagagcaatgaaaagggaaagtatatt	UCSC;UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr11	67355597	67355598	2000075	0	-	Druze85; RIP_L1_chr11_067_01	TTCAGTCAACCCAGTTCTAT	AGAGTGAGGTCCTGTCTCAA	LINE	L1	Ta-1	agcctaggagttcaagagcaggcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcttggtggtacatgccctgtagtc<br>ccagcttctggggaggctgaggcagaagaattgctggaacccaggaggcagaggttgcagtgagctgagatcatgccactgcactccagcagcctgggca<br>acagagcaaggcccagtctgaaaaaaaaacaaagacaaaactaaaccaaaaaaaaaccaaaaaacaaaaaacgcacacacacacaaaaacaaaggtagac<br>tccaataggaaaaattcactcaaaagcaattcaaataattattcagtcaacccagttctatctcagttctttattatatatataaacttattctgtccag<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>atgccctagttttctttttcttatcttttttgttttcttttgagacaggacctcactctgtcacccaggctggagtatag<br>tggcacaatcatggctcactgcagcctcaacctcctgggctgaagtagttctcccacctcagcctcccaagtaactgggactacaggtgcatgccaccat<br>gctcagcaactttttgtattttttgtagaaacggggtctcactatgtgggccaggctggtcttgaactcctggactcaagaagtccacctgcctcaacct<br>cccaaagtgccaagattacaagcatgagccactgcatctggttgattccatagttttctttttctctttgcccattgcctggattccataagcagaagga<br>aaacccaggggctgactttg	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/45	NA	NA	NA	intergenic	
0	chr5	2021411	2024378	2000076	0	+	L1HS426; Druze86; 31075; RIP_L1_chr5_002_01	CACATCATTTGCCTAAATGC	TGAATTGTCATGATGCTGTT	LINE	L1	L1HS	ctgagcctgcctttcccggtcttttggtgctggctgtggtgctgtgagagatgatgaagtttgtaagtcagggcagtttttaaacccacagacaagaagc<br>acatctgcaaaatgcagcctgggagctgtctactctgcccggaacagtggggatctctgcaggaggaaatcgcatagtttcccacgggtgaattgtcatg<br>atgctgttgtggctgttggcaggaagcttcctcacattttcagtttaaatgcattcctcctgatctttccaaaagacggaggcagaacagctggttgcca<br>tactccgcataaagtcctttgggtaaattgaaggtaaattttatcccttaaattctgctccatggggtcacagccttgggtccttaaa<font color="green"><u>TAAAGAAAATTG<br></u></font><font color="red">TGGTGATATCCCCTTTATCATTTTTTATTGTGTCTATTTGATTCTTCTCTCTTTTTTTCTTTATTAGTCTTGCTAGCGGTCTATCAATTTTGTTGATCCT<br>TTCAAAAAACCAGCTCCTGGATTCATTGATTTTTTGAAGGGTTTTTTGTGTCTCTATTTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTG<br>CTAGCTTTTGAATGTGTTTGCTCTTGCTTTTCTAGTTCTTTTAATTGTGATGTTAGGGTGTCAATTTTGGATCTTTCCTGCTTTCTCTTGTAGGCATTTA<br>GTGCTATAAATTTCCCTCTACACACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGA<br>TACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAAT<br>AGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCC<br>AATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTT<br>TAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAA<br>GTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTA<br>TCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAAT<br>AAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTC<br>TCACCGCTCCTATTCAACATAGTGTTGGAAGTTCCGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAAT<br>TGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGG<br>ATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCA<br>AAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAA<br>ACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCAT<br>CAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAA<br>AAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAG<br>ATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTC<br>CCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGG<br>ATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCTA<br>AAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAA<br>CAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAA<br>AAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCAT<br>CATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCATTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTG<br>CTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGAT<br>CTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGT<br>TTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGA<br>ATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAA<br>ACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTC<br>GGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACT<br>AACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT</font><font color="green"><u>TAAAGAAATTTG</u></font>ggggttttttc<br>ccctataaaagcaaaacaatccggcaactgcaccatggatgaagcatttaggcaaatgatgtgatttggataccaaagggaatctgaggcccggcgcagt<br>ggcttatgcctgtaatcccagcactttggaaggtcaaggcaggcaaatcacttgaggtcagcagtttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnn<br>nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaattcagttcaccggctgctcgtgtgagaa<br>tcatactgagcacccacagaaaagcctgctgtggacagtgccgtacagttcacaaaggcgccgcaaactatgagctc	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	3394	204	NA	intergenic	
0	chr18	50206967	50210957	2000077	0	+	Druze89; 237810; L1HS552; RIP_L1_chr18_050_01;AC203632;AC209537	ATGCTTCCTCTTCATGCTTT;NA;NA	TATCTGTACATGCATACCTA;NA;NA	LINE	L1	L1HS	gaggtggccacttccatgatgtactttaggaacaggacaacctgtccctgcccttgactatttgtttatctagctattcatttactaaacatttaaaagc<br>aatgactataagtgaagcattatgttagatgttagggatataaaattgactgttaaatgatctttgccctgaaatagctttcagccgattgaaagacaca<br>gtaaaaacagtgatactttgtaatagtgctatgattagtatacattgtaataagtgatatatatgtatatacacacatacaaaggatatatctgtacatg<br>catacctaaatgagacaccacacccagctatggggtgtgaggtagacggtgtcaagaagttttcctggagtctctctgaatgaagattaagagtt<font color="green"><u>AGCCA<br></u></font><font color="red">GTGGGGTGTTAAAGTCTCCCATTATTAATGTGTGGGAGTCTAAGTCTCTTTGTAGGTCACTGAGGACTTGCTTTATGAATCTGGGTGCTCCTGTATTGGG<br>TGCATAAATATTTAGGATAGTTAGCTCCTCTTGTTGAATTGATCCCTTTACCATTATGTAATGGCCTTCTTTGTCTCTTTTGATCTTTGTTGGTTTAAAG<br>TCTGTTTTATCAGAGACTAGGATTGCAACCCCTGCCTTTTTTTGTTTTCCATTGGCTTGGTAGATCTTCCTCCATCCTTTTATTTTGAGCCTATGTGTGT<br>CTCTGCACGTGAGATGGGTTTCCTGAATACAGCACACTGATGGGTCTTGACTCTTTATCCAACTTGCCAGTCTGTGTCTTTTAATTGTCAACATTAGACA<br>GATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGTACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATC<br>AACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAA<br>ATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACC<br>TGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTG<br>GGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTA<br>AAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAA<br>CCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAA<br>TCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAAT<br>AAACTAGAAAATCTAGAAGAAATGGATACATTCCTTGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAG<br>GCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAGCT<br>GGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGC<br>AGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACA<br>TCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAG<br>AGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGT<br>ATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAA<br>CGGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTAT<br>TCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAGCCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTG<br>ATAAGCAACTTCAGGAAAGTGTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGG<br>GTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACT<br>GCTCAAGGAAATAAAAGAGGACACAAACAATTGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTA<br>ATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCC<br>GCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGACTACAGTAACCAAAACAGCATG<br>GTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAG<br>AAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACAC<br>CTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACAT<br>AGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACA<br>GCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACA<br>ATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGC<br>CAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAGATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATC<br>ATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGA<br>AGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTG<br>CTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAG<br>AAAACGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTC<br>TCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATAT<br>CACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAG<br>CATGGCACATGTATACATATGTAACTAACCTGCACAATATGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AGCCA</u></font>aagc<br>atgaagaggaagcatgtgtgtgaaggctgctccacggtgaaggttgaaggagccaatcatggcaggcatggaattgtgagaaagcagttcactgtggctg<br>taaaggagaggcccagtggtgagaggtgagggtggaggagaagggaggaatcaggttggaaaagacctgttatcccttagatccaccttattgtgaattt<br>agcttattctccttttctgggagagctagacaatctgagagcctggcagcaatgggaagtttgtggtggcattggtgttttaaagagattttgtagcgaa<br>tgttcacaatccaggaggaggagtgtagctgagaaatacagtgaaaagcacagggcaatgggtatacggaagaggatgtccacatagaaaa	UCSC;UCSC;UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA;NA	48/48;NA;NA	NA;NA;NA	NA;NA;NA	NA;NA;NA	intergenic;intergenic;intergenic	
0	chr5	147318215	147320721	2000078	0	-	Druze92; RIP_L1_chr5_147_01	TCTGACACTTCTTACTTATG	TCTACTGCAATCGAGAAAC	LINE	L1	L1HS	gatcagatgataatgcaggttgcccaaggtaggcatggctggagcatttgtgtgctgcagtctttggtagcctggattttattccaagtatgaggaaaaa<br>ccattagaatgacttaaatatgttaaaatgtggttaccatatttacaaaataccttattctgagaaattcaggtctcagaaggcactctcatattgtccc<br>tctactgcaatcgagaaacctgaggctgattcatcttctgctaggtgtatgtggcggatgataacaagccattcaccagcctagagggaccaacctataa<br>gggtctacagcttagggaccttaagaacaggaaattaccaattgggagaaactttaatgaggacaggcaatcttttgggacactttaaa<font color="green"><u>ACCAGCCTGGA<br></u></font><font color="red">GTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTT<br>CCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTC<br>TTGTGCCAGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAAATACGT<br>CCCATCAATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTG<br>TCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAA<br>GCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCA<br>TTCTTATACACCAACAAGAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTA<br>CAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGT<br>AGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTG<br>GAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTG<br>ACTTCAAACTATACTACAAGGCTACAGTAATCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAAT<br>AATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGG<br>CTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCA<br>TAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTAGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAGAAGACAA<br>AATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTC<br>GCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAACAAAAAAACAAACAACCCCATCAAAAAGTGGGCGA<br>AGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAA<br>AACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTT<br>TTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGTGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCA<br>TCCCACTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGAC<br>TTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTC<br>ATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCATAGGTG<br>GGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGAT<br>ATACCTAATGCAAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAA<br>CTTAGAGTATAATAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAAAAATAAAAACAGTAACAATATAAAAAACAAACAAAAACAAACAAACAAAAAAA<br>AAAAAAC</font><font color="green"><u>ACCAGCCTGGA</u></font>aacaaggtagccaagactttatcctttatctcatctgatcttcacaacaaccaggtcaagtggaccaagctgaagttatcat<br>ttcccataagtaagaagtgtcagattccataaagaaaattaatttatgtttaacagagccatgggcaaagattatttcacctattttgctgactgagaaa<br>ggaattatgaaaatttgcctgattttacatgcatttgtcacagctggactagcactaaagtatagatgcccggattctcgctgtctccgcggtgtcactg<br>tctccttgtgacattcagggaatggggaaattttgtaactttcatcaagtcagctaaggagcaacccagccagcttcccacaaactacttaaggcattca<br>gcccaca	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr4	83148338	83150415	2000079	0	+	L1HS427; Druze94; RIP_L1_chr4_083_01	AATATTCAGCCTTCTGACAT	GCACATTCCAATTTGTAGTG	LINE	L1	L1HS	tctgcacattccaatttgtagtgcaaaacgttctcagtaagggagggctgaaggggctggaggagcgtggctcttataaaatctcaaaattgaggaacaa<br>aagcttccttccaggacaaaacccatggagaaactgctgggtgtggatgccaacttgaccaggacgggagtaacagggataaaatagagattgagagaga<br>agactcagattaaaaattgcaaatggaagtccaaataaatacagttaatttagtcaaagttgtctagtcaattcagcatgaccattaagatgaacacagt<br>tatccaaagctaatgctttttccatttttattaagatgtttgttaccatacgggcaaagactgagagtactaaataaaataaagctt<font color="green"><u>AAGAAATAAATGA<br></u></font><font color="red">TGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATT<br>CAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGA<br>TAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCCATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCGTGGG<br>TGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTG<br>CTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAA<br>TTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCG<br>CATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCCAACTATACTACAAGGCTACAGTAACCAAAACAGCATGG<br>TACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGA<br>AAAACAAGAAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCCTACACC<br>TTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATA<br>GGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAG<br>CAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAAATTTTCCCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAA<br>TGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCC<br>AAAAAACACGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATTATT<br>AAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGT<br>CAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTA<br>TAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAA<br>ATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCA<br>GTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCAC<br>ACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCAT<br>GGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAA</font><font color="green"><u>AAGAAATAAATGA</u></font>atagaagaa<br>tattatactcaaatatagttttttcagttataagattctatgagaaaaacaaatagtttgatgtcagaaggctgaatattacaattttttttactttatt<br>aaaacattgagtttatttcacatgtacatttttgtctccctgccatttccatgtctggccactgcaactactatatcctagcacacatttcatacatatt<br>taaaaccaagcagagggtggagatccatctttaaaaaccaaataggcattttggaaaacacattcttagcagtggaacctggacatttatcaaacatggt<br>agggaaagttctcactctgtgttatcaaacagacatctagatatcaactgttatagaaatgaaataagatgggaaatt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	57	2230	139	NA	intergenic	
0	chrX	11635288	11641320	2000080	0	+	L1HS24; AC004554; Druze96; RIP_L1_chrX_011_01;AC208301	TTTATGTTCTATTAACCAGA;NA	TGTCCAGGTAATATTGTTGA;NA	LINE	L1	L1HS	gatgtacatgtgagttgtgtgtgtattctttatccactgacatttcaaaattctatttaattatatcttcatattttaaaaatcagatgattcaggggac<br>tgattcgataagttgtcttacttccactagtggaataccatgcaactgcaaatccaaggactaagaagttctcttaagttccaatgtgggaagatgtcca<br>ggtaatattgttgagtgaaaaatccaaggcactgaacaatgtgtgtgtatatttatatatatagaacaccaccttttgtaaagaaaaggtggaaaataag<br>aataaatattcataggagtaaaacttcttgaggaataatgtttcgtgtattttgccttttgaaccaagtaaatcaaagaactattc<font color="green"><u>AAAAATAACAATAA<br></u></font><font color="red">GGGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCGAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACACAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCAGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACCAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTGGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGACCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGACAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTGTTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAA</font><font color="green"><u>AAAAATAACAATAA</u></font>aatgagataaaatctactaaaaatcaagtgaaacaagtttttgatctggttaa<br>tagaacataaaatgataattaaaacattagctaaaattatgattcaaattcaaattcagggatttttattatgctcacaaagttgtgcaaccgtcacaca<br>aattccagaactttttcatcacctccaaaagaagccctgtgctcattagcaatcactctccattcccctttcccccaatccactatttaattttttgaaa<br>aacaagttataaaacactcaagcacaacataaattccaagcaaaactcaaaactggtttctaaacagcactcattatagtagcacctgtgaccaatatct<br>ccaagaagttgggttagggaaagaaaactgtca	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	59;NA	6148;NA	101;NA	NA;NA	intergenic;intergenic	
0	chrX	11863121	11869356	2000081	0	-	L1HS28; AC002980; Druze97; RIP_L1_chrX_011_02;AC206602	TTTGTGACACTGGATTTCTA;NA	GAGTAGAATGCTTCTGTATT;NA	LINE	L1	L1HS	aaactatgggataaatctagacgcttgcttgaagccgaccggatttcttcaaactttgaacactggatttattccaactaaggtactgctctctttaagc<br>ttttaagtacttgaggctgaagtatttcttaaacacattttagaataagccactgtatattggagctgtttttcctctccaagagggagtgatgtgtaca<br>aagcacctacagatataaagtggcatacggctaactgtgggagaggaagagtagaatgcttctgtattttatcaagtgctgggggctgtggagaatgcaa<br>ttgtaagcaaataccagaatgacctataggtaaacatatgggatttctcataataatcacctcttaaacctcccaacaatactgtt<font color="green"><u>AAAAAAAATCACCA<br></u></font><font color="red">GGGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGACAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTCACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAATGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGCACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCGGTTAGAATGGCAATCATTAAGAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACAAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAACACATTAAAAAAAAAAAAAACAACAAAACAAAGCAAACATGGAAATGTTTGTT<br>ATTTTAATTGTTATGATGGTTTCATGGCTGTTTGCATGTGTCAAAACTCATCAAATTTGTGTACGTTAAATATGTGAAACTTATTGTATGCTGGTTACAC<br>CTCAATAAAGCTGTTAAATTTAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAATCACCA</u></font>atagttgctgctagaaatccagtgtcacaaaaggccaaagtttattgaca<br>aattggtgtatatgaaagacctcgaccttcaacattcacaagaaaagatcaattgcatgtaatttgtcttgcccgtaattttgctgttcacataatatgg<br>tgaagatccctcttacgctacaaacaaattaaattaaacaacaacaacaaaacgatcttgtcttgaatagcaattgctatgaacttcaaggacatcattc<br>attccttcatcattcaatctataaatatttactgactgtctgccatgtgtcagaccctgttctaggccttgggaatagagcagtgggagagatagacatt<br>gttcataacttcaaagagtttataatctcaaaggaa	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	58;NA	6531;NA	282;NA	NA;NA	intergenic;intergenic	
0	chr7	31490305	31491778	2000082	0	-	Druze98; AC005090; RIP_L1_chr7_031_01	CAAGTTCATTATTCCACAGA	AAATATGGTTTGGAATGAGC	LINE	L1	L1HS	gtgatttctgggattttggtgtacccatcactcaagcagtgtacactgtacccaatatgcagtcttttatctctcaccccctcccacccttcccccagtc<br>cccaaaatccaatgtattattcttatgtctttttgtcctcatagcttagctcccacttatgagtgagagcttacgatgtttaatttttcattcctgagtt<br>acttcacttcgaataatggtctccaattccatcaaaattgctgtgaatgccattatttctatcctttttatggctaatagtattccacagcgtatacata<br>tatatctcacattttctttatccactcattcattgatgggcataaaggctggctccatatttttcaattgcaaattgtgctgctat<font color="green"><u>AAACATGTGTGTGC<br></u></font><font color="red">CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCATTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATACTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATGG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAATAGGAGAGCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACATGTGTGTGC</u></font>aagtatcttttt<br>catataatgacttctttttctctgagtagagatgcagtaatgcattgctggatcaaacagtttgagtacattatttattcaatgactgctttttgacaac<br>ttaccatgtgctgagctctgttgtgagcactggcaatacccaagttgggagagaggggttgggatggccctggaggcccccctcttccccttgctgtggg<br>ttagcaaagagaggttgttcctgagacagtgaccaaagcacacagccaagcactctggaggctccacctctctgatgaggctgcttctctattagggagc<br>ttttactttacaagatcacccattcttacaaatatgcaggacaaggtgggagtggaggctttccctctgccaga	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr12	125349471	125355550	2000083	0	-	L1HS117; AC005885; Druze99; RIP_L1_chr12_125_01;AC219111	GATTCTAAAGAGGTCCATGT;NA	GATATTACATGCAAAGGTGA;NA	LINE	L1	L1HS	ctctgtgcatcccaactatatcccataaagagtttcccatctataaaatgggattcataatagtagttaactcaaggtggcattgtgaggattaaacaag<br>ttaaaacatatgaatcactgacaacagtgcctggcacattagcacatagtaagtgcccgatcagtataaagcatcattgatattacatgcaaaggtgatg<br>ctatggtttggatgtttgtctacccaaacctcacgttgaaatttgatcccaatgtggaggtatggtctagcgggatgtgtttgggtcatgggggtggata<br>cttcatgaatagattaatgccatgtccgtggggatttgggggtgagtgagttctcactctattagtttccataagagctggttgtt<font color="green"><u>AAAAAGGAGCCCGG<br></u></font><font color="red">GAAAAGTTCTTGCGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCC<br>ATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTG<br>CCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATTGGGTCACTCCCACCCGAATAT<br>TGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGC<br>ACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCTGGAAGCT<br>CGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAAC<br>CTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAA<br>GTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTG<br>CAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTA<br>GATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAG<br>CAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAA<br>AGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACC<br>AAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGA<br>AGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGG<br>TGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTT<br>CAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAA<br>AAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAG<br>AGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAA<br>TACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGT<br>ACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGAC<br>AGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGAC<br>CCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAAC<br>AAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGG<br>ATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGAC<br>TTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGA<br>ACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTC<br>CAAAATTGACCACATACTGGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAACTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTA<br>GAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAG<br>AAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGCGTGTAGAGGGAAATTTATAGCACT<br>AAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGC<br>AGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAA<br>GGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCAC<br>CGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACA<br>TACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAA<br>AGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGA<br>GGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCTGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTG<br>ATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTG<br>GGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGA<br>AAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGAC<br>AAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCA<br>ACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGA<br>CGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTA<br>CAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACC<br>TAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACAT<br>TCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACT<br>TTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAG<br>GCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAAC<br>AGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGG<br>TGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACG<br>TTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAAT<br>GGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACA<br>TGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCA<br>TCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAG<br>AGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGA<br>GAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATAC<br>CATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACATATGTTTATTGCGGCACTATT<br>CACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATA<br>AAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATAT<br>TCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGG<br>ATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGC<br>ACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAGAAAACCACTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGGAGCCCGG</u></font>aacctc<br>cctcactttcctccctctctcgccatgtgatctctgcacacactggctgcccctcaccttctgatattagtggaagctcatggttctgcaggttgacatg<br>ttcttgcaaaacctgaagttgtactgaagaattgaagccaacctaactctaaaaccttttcttttttccatatctagggatatcattttctagggtaaat<br>atgcttccctaatggaaaacatggacctctttagaatcagaaatctcatctgtacctgaacctgatttcaactcccaaatcctgaatttgaattgacaat<br>ctaaaataacaaggttttgagatcctgggaggaagtgagtatattttgcatcagggaggagcatataaaatctttggtca	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	57;NA	6629;NA	535;NA	NA;NA	intergenic;intergenic	
0	chr8	17903786	17904702	2000084	0	-	L1HS77; Druze100; AF417124; RIP_L1_chr8_017_01	GAGAAAGCACCTGTAGAAAC	GTCTAAAGAGCTCAACTACA	LINE	L1	L1HS	gttttcacacttagagcgtctaaagagctcaactacagttgagggttgaagattccagtcatttattaattcattaatgtttactgagtgtctacaatgt<br>gcatgtactatttttggacagtgaccaaaagagattaacatctcagatgtcatggatcttgtattttagcatggagaggcagacaaatattacataggtt<br>aaaggtggcgtgcaagcactaagcaggtaaaggataaggcagaggtttactcagcaaaagttaacatttgaccaaacagttgagttcaagaaaacaagcc<br>atgcaggtaggtatgtgaaggaagagcattccaggcagaagtattagcaagtgccaaggcctcagaagtgctaacaactctagtaggagagtt<font color="green"><u>GAAAGGT<br></u></font><font color="red">CAAAAAGTGGGCGAAGGACATGAACAGACACTTTTTAAAAAGAAGACATTTATGCAGCCATAAAACACATGAAGAAATGCTCATCATCACTGACCATCAG<br>AGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTATAAAGTCAGGTAACAACAGGTGCTGGAGAGGATGCGGA<br>GAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATAC<br>CATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATT<br>CACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATA<br>AAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATAT<br>TCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGG<br>ATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGC<br>ACATGTACCCTATAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAATTTTACCAAATTTTTCCCCAAAAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>GAAAGGT</u></font>tagaagcagcggcaaaaggatagtaaggccatttaggaactgttgcaattgcccagaacaaggctacgtgtttctgtttttacatgga<br>ataatctggacacgatcagctgactttttcctctcagctgtaaagtcagatacagagaaagcagtttctacaggtgctttctcaaagatctctcttctct<br>caaaacattccanaaaaaaagcaattacttctgctgagggaagaaatatgagcacaatggaagcaattctctgtggtacatgtcttacaaagaaaagtat<br>gagtacaatataagaaactagcccagtgacaatgtattttgtagtttaccatatctagatgaaaagaaaacaattacttttcacttctaattgttaaaac<br>ttcca	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display; E:Insertion-specific detection:PCR	NA	58	990	78	NA	intron:PCM1:NM:006197:29/39	
0	chrX	55601886	55601887	2000085	0	-	L1HS30; Druze101; AL022166; RIP_L1_chrX_055_01;AC206417	CTAGGTATGATTAGAAGATG;NA	TCTTAGACAAGTTCAATCAC;NA	LINE	L1	L1HS	atcatgttagcatgtttctaacgactctctcagggccttgaaaggggcctgtgcaactgacagacactgaagattaatattccttagcttcatagtagat<br>gcacctctgcaccacatctgatacatcaagtctagaactcttaaggttaataagtggttgaccctccagtagttgtgctggtggcccagtccagcactgt<br>tgactaatacaactctcacgtttatttgcaaacctcctagaagtctttcttagacaagttcaatcacttctcctcaaaggaaaattttgtggatttgtca<br>tttaagatggcaaagatgtatttgtctcttgggaattgcccctaaacagaaaggaaaatgagacttagtaacataaactctaacatc<font color="green"><u>AAGAAAACAAGAA<br></u></font><font color="red">ATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTA<br>TCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAG<br>ACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGA<br>CTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCAT<br>ATCCAGCCAAACTAAGCTTCATAAGCGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGA<br>GCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGC<br>ATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAA<br>TTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAA<br>AATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGTCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAG<br>ATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCAC<br>CCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAG<br>ATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCA<br>ACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAA<br>TTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCT<br>GCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGG<br>GACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCCACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAA<br>AAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAAC<br>CCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAACAGAGAGAAGAAT<br>CAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATA<br>AACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGG<br>CTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTG<br>GTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCA<br>GAGACACAACCAAAAAAGAGAATTTTAGACCACTATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACAT<br>CAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGA<br>GCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTA<br>TTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAAC<br>TGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATT<br>CAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGA<br>TAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAG<br>TGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTG<br>CTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAA<br>TTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCG<br>CATCACCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGG<br>TACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGA<br>AAAACAAACAATGGGGAAAGGATTCCCTGTTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACC<br>TTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATA<br>GGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAG<br>CAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAA<br>TGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAATTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCC<br>AAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCA<br>TTAAAATGTCAGGAAACAACAGGTGCTGGAGAGGATGCAGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAA<br>GTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGC<br>TATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGA<br>AAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCT<br>CAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATC<br>ACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGC<br>ATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAACAAGAA</u></font>ta<br>tatttagatgtataaccttgaaccacaatgaggaaagaggattagtagcttacttagcagagcaatagaatgtaaatttaagtgttttcagagaggcata<br>gaaaaaaagatgaaaacccatttactccaaagacaattagaaaagtttttggaattttgggcactagaaactgtggaagtggaggtatggcattgggatg<br>aaaactggagtgttgctagaaattctaatacttagaaattccacaccatcttctaatcatacctagactttcaaggtgatcttagttccacagcatctgt<br>ctccactgcctctatgactgttacagtaagtagagccctgtgccacagagtcctcccaaagctcaaagcttgaattctttgtgac	Other;OTHER	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	4795;NA	97;NA	NA;NA	intergenic;intergenic	
0	chr7	129907891	129908486	2000086	0	+	L1HS13; Druze102; AC007938; RIP_L1_chr7_129_01	CACTGAATTTAGGCTGGTAT	CATTGTACAGATATGCCACA	LINE	L1	L1HS	tcactgctccccgttccagccctaggcaaccactaatctactttgtgtctttatagatttgcctattctggacatttcatataaatggaatcatacaata<br>tatgttcttttgtgactggtttcttttacttttcaaggttcacccatgttgtagcatggattagtccttcaatcccttttattgattaataatattccat<br>tgtacagatatgccacattttatttttatcccttcatcagttgatggatacttgtgtgaactcagtggatttgccttaaagtgcttgaacaactatgaca<br>agcagagtgttgtacgatggagatagtggaaatgggggtaggtgggttacagatgggaaggaaccccatctatggtttt<font color="green"><u>AGAAATTCTGGGTTTTGTTCC<br></u></font><font color="red">ATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGAGCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAA<br>TCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACT<br>GGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAAC<br>CATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAG<br>GGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATCGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAG<br>CGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAA<br>ATTCTGGGTTTTGTTCC</u></font>tttcttcttcttttttttttttttttttttgagaaatgaacaggccaaagagaggagtaattcatggatctgactttattcat<br>ggttcattctccccactttagtaccatattccattccccactgcttagaccacagaggagaaagtctctgaaataccagcctaaattcagtgaaacctgt<br>ttaaataagtaatttcattcaactgaagaattttcagtagataaaatagataaaatacggcctccaggactcttgcaccagtctgacttttagctgctgc<br>caaaaacaaaagaatgtttcacttggaagtgttccttgttcttcttttaaggtaaatctttactttgcagattgtagagttttcaatattatcttg	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	59	745	128	NA	intergenic	
0	chr2	169813380	169819408	2000087	0	+	238226; Druze103; L1HS15; AC007556; RIP_L1_chr2_169_01;AC204955	GTATCTTTTGGTTTCATCAG;NA	AATCAATGACCAATCAGTCA;NA	LINE	L1	L1HS	aactattgcagcaggaaaataaacatatatttttaaaagaaagaattgcatcaatgtggattttctctttaatgatagtttaactagaaaaccctaatta<br>atcagaaaatgtttaagatgtcataaattttatttgaccaatttccttatctgtggtctaatcaatgaccaatcagtcattggactccctaaatctttct<br>agagcctggcaatcccagtcccactactaacaaaggcatcctcatatacttaaataagtaaggagttcaataaatcttttagttctgtgtggtgcacaat<br>caagaagatctagccctttagtaaaaaggtacacaatttctatggtgttgcacaacaaaagaactttccaaaagaaattcac<font color="green"><u>AAAAAACAGCAATGTTGA<br></u></font><font color="red">GGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGAGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGTC<br>CCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGA<br>GGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAA<br>CCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGGAACAGA<br>ACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAA<br>GAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTC<br>GAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGTGATCAACTGGAAGTAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGA<br>AGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCT<br>GAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTC<br>AGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTT<br>AAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTTGGCAGAAACCCTACAAGCCAGAAGAGAGTGG<br>GGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTA<br>TAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCC<br>GCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCA<br>AATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAG<br>TGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAA<br>GGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATT<br>CAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGTCTTAGACT<br>CCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGC<br>TCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTGTTCCAAAATT<br>GACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCA<br>GGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAA<br>GATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCC<br>TACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGC<br>AAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGGCACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAA<br>CAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAGAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTTCGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCAAATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAACGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGAGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAA</font><font color="green"><u>AAAAAACAGCAATGTTGA</u></font>aagaaataaataattattgctattttgggaatgttgtgttgtcctcatgggta<br>tgcattcaaatttttttcatactgatgaaaccaaaagatactaaaactacattttctcgaatcccaaaacatcccagcccagagcagagaaaattcaact<br>ttttataatgtttctatgtgacagcaaatagcatgtgtctgacatcattagtgaaaagggagtaaatggatggcagcggcgggagggggacgggaggagt<br>atttataattaactcatcaaaaatctcatgagcattttttaaataccacacactcctccacagataaacagacagcaggacaagatatgcaatatactta<br>ctaactattcattccacacatacattcta	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intron:LRP2:NM:004525:19/79;intron:LRP2:NM:004525:19/79	
0	chr2	143727276	143727277	2000088	0	+	Melanesian104; RIP_L1_chr2_143_01	CATGTCAACAGTTTGATAGG	ATGAAGTGTTTCTTCCTGAC	LINE	L1	Ta-1	tctagatgacttgcatcaatatttgattagatacattagctggtcgaactctcaaatgatcagaataaacatgattatgtcttaaaaacatggtattaag<br>gcattgttggacgttggagtgtatgtgtgcaatggtttcattacctgcagaataatgaagtgtttcttcctgactgaaaaagaccatcatagcttcagct<br>gatgtgctacattggaaatagctttagaattccaagtttgaattaggcttggtgttcaatctcagtctatgaattatagattacagatagcaaatgacta<br>ttgagatttttggttcaaggaaaatcaaagaagagcaaaattagaaatattttaaaatttgaaatctgtctttaaaaagtttgatggattagcaattgta<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tgccatgtaattacaatgtctgcagagaagttgaacttaaaatgaataggaaaacaaacaaaaaattgtatgtgcctgag<br>aaatgttgcaagtctcagaagcacacatttgtgacaaccaaaaatggacagatttcatttatttcatttgttcatatatgctgtttggatgtttgagttg<br>ttttctctttgtactgaaatccaaattttccttcctagttgaaatcctatcaaactgttgacatggactgaatcttatttgattgctatgtggaaacata<br>acaatgacaacattaattattaagttttggtattcaacaactttcagtaaatcagaatgatacttgctaagtttaagaatatctgcatattttataacag<br>cacactctttggcctaattg	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intron:ARHGAP15:NM:018460:6/14	
0	chr19	56867750	56869325	2000089	0	-	L1HS112; Melanesian105; RIP_L1_chr19_056_01	CTGAGTACTGAATGTGTATG	ACTGAGTGCCACTTAATTTC	LINE	L1	L1HS	taaataatgcagcctcaaaatatataaatccaaagttgtcagaactacagaaaatgtccaaattcataatcatagtgggaaattttttaacatatctctt<br>tcattaatgagtaaattaaacatgaaaaaagtcagtgaagatgaagaaaatctacacaacatcatcaacaaattgacttaaacaaaagacaaaacagtac<br>actcacaacagcaacaatacatgcattattaaagcacacacagaatatttgtacaacttgatcagagactgagccattgagaaaatctcaacacagttta<br>agggatttatatcacaaaaagtatattttctgatcactttgttgttaagatggagatctgaaacaaaaatattattgaactcttgaaaggtt<font color="green"><u>GAAAATTA<br></u></font><font color="red">TGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATC<br>CAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAG<br>ATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTA<br>CTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTT<br>CCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTCAGGACATAGGCGTGGGCAAGG<br>ACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTAC<br>CATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAA<br>ATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGA<br>AGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGG<br>AAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGTGA<br>TTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACAT<br>GCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACAT<br>ATACACCATGGAATACTGTGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCG<br>CAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGAC<br>TGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTAT<br>ACATATGTAACTAACCTGCACAATGTGCACATGTTCCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATTA</u></font>agaaattttatccagt<br>attagagatggaacctaatgggagatgtttgggttatgggagtgggtgcctcatgaatggcttggtactgtcctcttggtaatgggtgagttcttgctct<br>attaattcttacaagagcggttgttaaaaagaacctgccacctgcactgtccctatctcttgctttctctctcctcatgtgatctttgcacgtggtggct<br>cccctttaccttctgccatgagtagaagcggcctgaggcctcaccagaagcagatgctggttccatgctttctatacagcctgcagaactgtgagccaaa<br>tacacctcttttctgtataaattacccagcatcaggtattgcttttttagcaagactaaatggactaagacagata	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	1686	102	NA	intergenic	
0	chr9	104113267	104113268	2000090	0	+	Melanesian106; RIP_L1_chr9_102_01	AGAGGTCTGAACAGTAAATG	TCTGGCTCTAATCAATGAGT	LINE	L1	Ta-1	ctttatttttagtcaagtgtaaatagacacaaaatatacatagttttctctggctctaatcaatgagtggattttctcatgataaaataacttagtttat<br>aaataacagtaaaatattatagaatatgactaacacctagaagtaattcaatgagagttggtttttgcatcaaagttatgcatagtcaaattaagtagct<br>ggtatacatgtagaatttcctagagtagtttcatatacataatactattaattctctcattaacactaacagttgattttattgttattattgacattaa<br>agagaaggctcagagaaattacataacttgtatgaaatcacacagtggagatttgacatcagatcttttctatctccaaagtccttgtactttccattat<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>actctgttgcttgtctaattaagataatgcatcatatctagttttatctcctactcccttttaggagaaaaaatagccca<br>aatgtttataatgtttcttgctgacaagggtttcctcaatgtgtcagaatttaagtactctggctttagtgaagagtgccgtataatttctcttatctca<br>gttattacaaatttaactagcttaaagtagattttattcatcatacccttctacctacgaattttggcttactgggcttcaactattagatgtcaccttg<br>actctctgtaacaagagaacctttctaagaatcccagattctacactccatacccgcatttactgttcagacctcttatgaagttgatttagccctacaa<br>gtctcgctgtgcttgtccgt	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	45/48	NA	NA	NA	intergenic	
0	chr7	91264198	91264199	2000091	0	+	Melanesian107; RIP_L1_chr7_091_01	TGAATATCTTCTCACCAGTG	AACTGAAATCACAGGATCAC	LINE	L1	Ta-1	aaaataatcatggagaagaaaagaaaatcatggcacctaaattaataggcactagacatttgaaacaaggaattgaaataagtgtgcaaatttaaattgt<br>ggaattttcctttgtgttcttctcatagttattcacgatacaggcaatatcatttgcaagcaaagataaacattctttactgatgccaggaaacattctt<br>tgcagcaaaaacttactaatgaatatcttctcaccagtgggctcctatctcctaccaagaagaaaaactaattatttttcttaaatttgtttcaattttt<br>agattatattttctacattaagcaaaaaaaaaagactgaaagtctatgagccctttaaatcatattttatcacaattttcttcacttaatcatattatag<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>gaggagagagaccattcttgatatgtctttatgaaagatggcaatatgttatcacttttcccttcaaattatattgaaga<br>tattggcatagaaatagattattagcttattctattataattaatgtgtttatgatgactaaagaaaataagggttctatgtgatcctgtgatttcagtt<br>ataaccaatatacacaaccagtaagttctttaaaatcaaggttgatcagaaatgaccccatcacgtaggcctctacagtattggggggatgggggggttc<br>ctttttttatcttagatttatcttttattttatttttaattgctatggatatataatagttgtatgggtggaggtagggtttgttttgttgtgtgttttt<br>gagagggagtctcactctgt	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	45/48	NA	NA	NA	intergenic	
0	chr2	101409206	101409207	2000092	0	+	Melanesian108; RIP_L1_chr2_101_01	AGGAAGGATCAAAGTCATTC	AGTAAAAGTAGCGTACAGAG	LINE	L1	Ta-1	ggatggagagaagttgatcaatgggtacaaacagacagaagaaatgagacctaggctttgatcaatctagtagagtgactatagttcacaaaaatctagt<br>tgatattttcaaatacccagataagaatcatttggctgcctccagaaaaagaaaagatacctgtttaaggcaataagtatcccaattatactgatttgat<br>ctttacacagtatagaaatgtgtcaaaatatcacgcatatccagaaaatatatacatctattatatatcagtctttaaaaatccaccaacttttaaataa<br>taactgtgttgagtgtggtggctcatgcttgtaatcccagaacttttggaggctgaggcaggacgattgcctcgggccaggagttcatgaccagcatggg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>caacatagtaagagcctgtctctacaaaaaattaaaaaaaaacaaaaacacaaaaaacatttctgggcatggtgacatac<br>gcctgtagtcctaaatactcaggaggctgaggtgagaagttggcttgagcctagaagttggagactccagtgagctgtgatcgtgccactgctctccagc<br>ctgggcaaaagagcaagacctcgtctctaaaaaataaaataaataaataaatactgcataatgacaaatatgtataaacaaaagctatatctaaaaaatg<br>accattgagaaattctacgtggattctttaggtatattaaatgcagtttgagattttgacagacccaagaaatgtcactggagttacatgctaccattca<br>tctactcattctttagtgag	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	50/48	NA	NA	NA	intron:LOC731220:NM:001145664:2/12	
0	chr11	9999211	9999212	2000093	0	-	Melanesian109; AC011092; RIP_L1_chr11_009_01	GAATGGCTACAGTCAACATT	TTTGTATTCACAGGAACTGG	LINE	L1	Ta-1	gtcttgtgtttatttggtttttggtttttttgttttttttgtttttttggcagcctatgtgaactatttttgtttacctgaggattagtgttttaagtgt<br>actaacaatgctgggatttttaatgttaataagtttgtattcacaggaactggtttttatagaccctgtgatattttaatctaatccatacccgtttaaa<br>cttgggtgtccctccctgccccaaataatcttgtaaaatgctcttgacatcttttgtcatgtctgttcacctgtaatttggattttactagaacatgtac<br>tagttttagaaaatgtatccaacagttttcacagtatactctttaataggcatttttgaaaactgactaaaatgatcctgggccatcagctatcaacact<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ttgtttccacagttaaaccacattaatcttgtatcatttgtgtttgtacctttttctatgcatgctttctttttacttgt<br>ccatggttaactttggccagttttttattagctattgatgggtcagtatgtctccatcgatgatctctgatattaaatatagggtttttttttaaagttc<br>ttaaaaaagtttttgttcagtttgtcttacaaatattattcttactttgtacataaaagttattaaaatgttgactgtagccattccttgctattcagca<br>agttgtttcagttttaaaatgctttaatggaaaacctttggtagtctcacttttgtctttccctggaaaaacttctctctgtgatactatgtgattattt<br>ttgaagtgataatgttactg	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Badge RM, Alisch RS, Moran JV. ATLAS: a system to selectively identify human-specific L1 insertions. Am J Hum Genet. 2003 Apr;72(4):823-38. Epub 2003 Mar 11.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12632328">PMID:12632328</a>.</LI></UL>	E:Retrotransposon display:ATLAS; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	45/48	NA	NA	NA	intron:SBF2:NM:030962:6/40	
0	chr8	77499942	77500980	2000094	0	-	Melanesian110; RIP_L1_chr8_077_01	GTTTAGTGGTAGATACAGAC	AACATGTGGATTCACTTAGG	LINE	L1	L1HS	gagctgtaaatccaccaagaactttctctgacagcttttatgctgaaaacctccacggatgtttcattttgagagacagtgtagtgtagttaagagcatg<br>gattctagagttgatctgcttgtgtttaatttcaagatccactatttatttgctgcacgtccttgctcaacttacttacttactctctctgttcttctat<br>ttcctcatcttcagatggcggtaatattatctacctcatagttgaggtattaaattagttgatacaggcaggacacttatgacagtacatggcatatagc<br>aaatatttacatagcacctactagtattatttaccagcctttagcttaaattaataccagtcatatttatgaaataccagtccccttccttgatt<font color="green"><u>AAAAA<br></u></font><font color="red">GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCATTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGAAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAA</u></font>ccagctccccatacatctagttaacaacccaaagtctgtatctaccactaaacatg<br>gcaacttagtcatttaccaacttaggttcacattcagtggaaagaaaataagtgataaggtaaagtttaggaagaactgacccacttatgcctagtgttc<br>cattattggagtgctaagaatgtgagagttttttatatcctgctgctcaaggttattaccaaggtctgattttttcactcatgtaaaagttcaaaaaatg<br>gcaacctctggcataaatgggttaataatagccagggacaaaggtgatggacgcagatgcaggagatcaagtgctatttttggcacaaagttactcactg<br>tctccgggtgatactctgttgagattacctggtcactga	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr4	17803552	17803553	2000095	0	+	Melanesian111; RIP_L1_chr4_017_01	GAAATGCACTACAAAGCATG	AGTCTTAATACACAGCCAAG	LINE	L1	Ta-1	cattcagagcctcattcctggctcttagctcttattgctaggagggctcttatttgccctcttagcaaagcttttgaatctacagggcaacctgaagatt<br>aaggggaagataaacctcattcattttcccagaattttatctcttcacatgtaaaaggggcacagggtcatgaaatagcctgacatggggcagggatggc<br>tttctccaacagggacattagtacctcttgggcttccagaaatgcactacaaagcatggagaggaaagaataaaggcaataaaagaaatgagcaatcaat<br>ttttatcacctggttaagtaatctaaactttttaagcacatactttataggtacatgtatgtatagtaaaaagttttcttcaaatttcaaggtgacactc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>atgattaaaatattaagcttgaggtggactatttaagcctctccctccagcccctgaaggtacctgctggtgcttttctg<br>ctattaggtgtacatagtggatgtcttgcaaaaaaactggataaggaaattgttttaaactgcttggctgtgtattaagacttaattcgctgctccctct<br>tgaattaaatcctctagtttatcaaatggctaaagcccaatctgtctaaaagagggagctggctgtgctacaagaatttatgtttccatcctcccaagtc<br>ccatctgtgccccggatgtcacctggagagatggtgtttggaagagcaaggcagggacaggccaaggacaaaacgtggatgagtcaagcaggagccatca<br>gcagggagcaagccctcttc	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	50/48	NA	NA	NA	intergenic	
0	chr9	71967361	71967362	2000096	0	+	Melanesian112; RIP_L1_chr9_070_01	TTGATTTGACTTCACAGCAC	AGCAAATGCTCCTCATAGTA	LINE	L1	Ta-1	ccagtgtttagttctttaacacaaacagtccttttgaactatataacaaagatttgatttgatttgacttcacagcacccaacaaaatttatttcctcca<br>tttcctggcaaaattctattcattatatttggtagttgttaaactataacatcctataaagtgaaaagcaataaccctgattattttaaaacctatcttg<br>atttggtttgagaacatgaattcctgacatacctgattctctactttttctttcctgggtacttttgttttgttttgtttttttaagacaggatctcact<br>ctgtcacccaggctggagtgcagtgatgtgatcacagttcactgcagcctcaacctcccgggccgaggtgatccttccacctcaacctcctgagtaactg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>gaactacaggtgtacaccaccgtgcccagctaattttttatacttttagtagagagggggttttgccatgttgctcaggc<br>tggtctcgaactggctgcaatctgcctgccttggcctcccaaagtgttgggaacaggcatgagccatggcacctggactcgtgggtactttaaccaggaa<br>cttttatgaactttgacaggcctaggggcagtctgaccccttggactaacacaaccttgtaggtgggtttccacacagacctcctcctaatcaaccaccc<br>ccctcaaaaaaaaaaaaaaactttagaagagacttaaaattatatactatgaggagcatttgctcagtgaccttttaggttctgctgcctgtcattatgt<br>tgtttctagagagcagatca	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	50/48	NA	NA	NA	intron:MAMDC2:NM:153267:9/14	
0	chrX	80983310	80989346	2000097	0	+	Pygmy113; RIP_L1_chrX_080_01;AC209313	AGGTTTGTTTCCAAGTATTG;NA	GCATTTTCAGTCTTGTAGAA;NA	LINE	L1	L1HS	cacaaagatgtttgaagttttatttccatttgagcatttctctatatacattgattaatatgcattttcagtcttgtagaaaatgccaactgaggttaac<br>aactgccccggttgttatctttgtacccccaagcaactcaagtaacctattgtagatatagtcaattggcactcagtattcatcccaaccactttctggt<br>gtgcaatcctatattacagaggctggaaatttaaaaataatttataaacaacagtaagatagcactacctattagactgattaaaatctgaaaattgaga<br>attaacaattactgacaagaatgtagacagaaacccttatttatttatttattttttgcgggaatgcaaaatgttatggctacatt<font color="green"><u>AGAAGGCAATTTGG<br></u></font><font color="red">AGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCTGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCTTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTAAGAACGGGCAGACTACCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGATCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTCAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCTGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCCTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTACAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGCATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATAAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACGCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAACA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAAGTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCATTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGTCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCCTCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGTTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAGGCAATTTGG</u></font>cagtttcttataaattcaacattatcttaccatatgacccaacattccc<br>atgctcctatgtatttatgcaaggtaattgaaaacttaagtctacaaaaaaaactgaaaataaaacctattagtagtatttttattctttattaccaaaa<br>actggaagcaaccaggatatcctttagtaggtgagtgaaattggaggtattgaatgctattcaataataaataggaatgaactatctatgaaatggactg<br>ccactgagtaataaaaaagaataaactatcaatccacataaaaatcactgaatcttaaatgcatatttctaagtaaaaaaagacagcctgaaaattctac<br>attctctatgatttcattcatgtcattctggaaaagg	UCSC;UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr8	107628674	107628675	2000098	0	-	Pygmy114; RIP_L1_chr8_107_01	ATACCTCTGGCATGTAATTC	TGTTAAGTAGTCGTTTAACC	LINE	L1	Ta-1	tgtacaaaaattagctgggcatggtcatgtgcacctgttatcccagctgtttgggaggctgggcagaagaatcgcttggactcgggaggcagaggttaca<br>gtcagctgagattgcgccattgcattccagcctgggcaacagagtttcactctgtctcaaaaaaaaaaaaaaaaaaagaaagaaagaaaggaaattctaa<br>cacattgtacaaaatggatgaaccttgaagatattatactaactgaataagccagttacaaatgaacaaatgctgggtgagtccacttctatgaggtacc<br>tagaatagtgaaattcaaggacagaaaatagaatgatggttgccagtgtctggagggagcgggaatggggagtttaatgggcacaaagtttcaattttgc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>aagatgaaaatgttctggagatgaatggtggcgatgtgtacttcatgccactgaactgttcacttaaaaatggttaaaat<br>gggctgggtatggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggtggatcatgaggtcaggaggtcaagaccatcctggccaacatg<br>gtgaaacccggtctctactaaaaatacaaaaattagctaggcgtggtggtgcacacttgtaatcccagctacttggtaggctgaggcaggagaattgctt<br>aaaaccaaaggcggaggttgcagtgagccgagattgcatcactgcactccagcctggcgacatagtgagactccgtctaaaaaataaaaacaaacaggtt<br>aaaatagtaaatttcatgtt	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intron:OXR1:NM:018002:3/16	
0	chr8	131110396	131110397	2000099	0	-	Pygmy115; RIP_L1_chr8_131_01	CAGTGCCTACTGTTAAATGA	CTGTCTTTAGGCATATTCAC	LINE	L1	Ta-1	tggaaatctgtattttaaacaggtactccagggggttctgatgtaagtggctctgggatcatgttctgggaaaacttagttttctcatctgtaaaatgag<br>aatagcaataaaactcaaaagtgttgatagaagcattaaatgtaattaatttcataatacacatgttagaaagaacataggattgagggtctgcactgga<br>gggctttagtcctaaatctgtctctaacttgctctgtggccttctggaaggcactcaacctttctgtgattcaatttccttgtgtgcaaatggaagggaa<br>tggcgctgctttctctctatcacgggattgttaggcaaaagcgctgaagacaatggctgtggaaatcctttgaggagtaggaagtgctaatcttatgaaa<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>cacagtcccgtggaaaatcaagcaggcagcaaagcagggacacatgaaacccactcaacaggtatttaggatttcaggga<br>ggactggagaccaggcagtcttgatgtggcgtggccagggaacatccttggggagctggggaaccttcttccacatggaagaaaagagcaaatgggctga<br>gtgcggtggctcgtgcctgtaatcccagcactttgggaggccgaagtgggcggatcacctgagatcaggagttcgagaccagcctggctaacacggtgaa<br>accccatctctgctaaaaatacaaaaattagccaggtgtggtggcggtgtgcctgtaatcccagctactcaggaggctgaggcaggagaatggcttgaac<br>acgggaggcagaggttacag	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr2	4759186	4765231	2000100	0	+	Pygmy116; RIP_L1_chr2_004_01;AC215718	CGTCCAAGAAATCATTAGTG;NA	TGCCCTTAACTGAACAGTTT;NA	LINE	L1	L1HS	gtagctcagactacaggcgcccgccactacgcccggctaatttttttctattttttagaagagacggggtttcaccgtgttagccaggatggtctcgatc<br>tgctgacctcgtgatcctgctcgcctcagcctcccaaagtgctggaattacagcgtgagccaccacgcccggccataattaatgatcttagcttccattt<br>tgggaagctagaggaagaagaccaattaaagactaaagcaagtggaaaaaaagcaataataaaatttagagaagaaatcaatagaactaagaacgggaaa<br>tggagaaaaatcaatgaaaccaaaaacttgttctttttaaaaatcaatcagatagatagacctccagtcaagcaaaacaag<font color="green"><u>AAAAAAAAAAGATACTGCA<br></u></font><font color="red">GAGAGCACCGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCA<br>TCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGC<br>CTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATT<br>GCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCA<br>CAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGGCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTC<br>GAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACC<br>TCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTTCTCAAG<br>TGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGC<br>AGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAG<br>ATAAAACCACAAAGATAGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGC<br>AACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAA<br>GGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCA<br>AGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAA<br>GCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGT<br>GTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTC<br>AGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAA<br>AATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGA<br>GAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAAT<br>ACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTA<br>CCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACA<br>GGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACC<br>CATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACA<br>AAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGA<br>TCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACT<br>TAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAA<br>CTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCC<br>AAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAG<br>AACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGA<br>AATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACAACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTA<br>AATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCA<br>GAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAG<br>GATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACC<br>GATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACAT<br>ACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAA<br>GAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAG<br>GGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGA<br>TGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGG<br>GATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAA<br>AAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACA<br>AACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAA<br>CATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGAC<br>GACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTAC<br>AAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCT<br>AGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATT<br>CCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTT<br>TCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGG<br>CATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACA<br>GAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGT<br>GCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGT<br>TAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATG<br>GCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACAT<br>GGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCAT<br>CAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGA<br>GAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCATTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAG<br>AAATAGGAACACTTTTACACTGTTGGTGGGAATGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACC<br>ATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTC<br>ACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAA<br>AAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATT<br>CTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGA<br>TAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCA<br>CATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAAAGATACTGCA</u></font>aattgttaatatcagaaaagtaaaaaggagctatc<br>actaatgatttcttggacgttaagaagataataacataatattatgactaactctatgaaaacaattttgatcacttcaaggaaatggatctttacaaca<br>aatggcgctagaataattgggtgcctgtaagcatcctgccaccccacaaaactagatccagaccttacacctttcacaaaaatcaactgaatcatacacc<br>tgtatgtaaaatataaaactatgaaacttcttggattaaaaaaaaaagacaatcttaaatttggcaataactttaagatacaataccaagagcacaacat<br>aatccataaaagaaaatactgatacatctgacttcactaaaatctt	UCSC;UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	45/48;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr5	40077569	40077570	2000101	0	-	Pygmy117; RIP_L1_chr5_040_01	GTAAGATTGGAAGTGAAGAC	ACCATATCAATTGGTGGCAT	LINE	L1	Ta-1	tctaacttatccaaagcatcacaacatttttattaatactaaggtctctgttcatttctccattcacaaacattatgataactattttcaaataatattc<br>cattttagtcacctgacatttacagcatgaattgtgtgaattcagctaagaattatttaaaataaacacagtagaaaaaatattgtggcaggttattttt<br>ttaaattggaagtataaccaaacaagcatgctggatcaaatgttgaattcatgctcacctaaaggaaatgtgtgtcttaaagaaaaatctagttagtaaa<br>tctttgtaacagggatacctctctggtatatgtgtgagtccttatgagcaaaaataaataaacaattgattcttgaggaaaaaacatgttttgaaatggg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>agatgcaagtaaagccaaaacaaataccagtgaccaaaaggagttgcgctgtgtgtgactaggaattattataatgctgt<br>aaaatagctcattgttcatcaagcaagacatgagtaattcaaactgactaagcatgttgtttagttaacctggacatgaagctcaagttaaatattatat<br>gtttataaatgtgtttttttgagggcttgctgtggtgcccctcacacagtagatgctgaattaaggctttctgagtagttcatgcaatgaaagtcctttg<br>ggcatgcattataaagttatgtaaaattatttaattctttcacattttaaagagtatgaattcaaaaagacctaatatgaacttcagttctgccgctgtt<br>taatgtctgacattttctga	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	50/48	NA	NA	NA	intergenic	
0	chr4	8046711	8047793	2000102	0	-	L1HS395; Pygmy118; AF417132; RIP_L1_chr4_008_01	CGAAGTAACCTCTTCAATAC	GGACCTTGATCTTGATGTTT	LINE	L1	L1HS	catggaatttcttctctgtcctcattgagtccatgaggaacccccaaatgaaaggcccccggagaagcatcttttgctcagaagtgaggtccccggagag<br>agcgggtgggcagttctgtgcacagaacctgccttgcccctggaggcatggtccttgctacagacatgtggccttgtgagccaccttcccctcggaggcc<br>tcgtgggcagcttggaagctcccatgagtgaatgtgggcatctggccctgtacctggccgatctccgccaccagggcccagtactggggtgacaccccca<br>gatgaggcaggtgtgagccatgctctttaaggccccataggctagtggaaagacagacagtttagggacccaggacaggtctttt<font color="green"><u>AAGAATGCTTCCCTG<br></u></font><font color="red">ACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTCTTCAT<br>GTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGT<br>TTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCAAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCACTCTGATGGTAG<br>TTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCAGG<br>AAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGA<br>TTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACAT<br>GCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACAT<br>ATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCG<br>CAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGAC<br>TGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTAT<br>ACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGCTTCCCTG</u></font>g<br>gtgtggagggtcctgcccctccagggtccaggctctgccccttcctttccaaaatgcaaccacaccacctttgagccaggcaggcgttcacttcctccct<br>gctttcccatcacgtggtattgaaaaggttacttcggaggtctaaaactcccagcaagctcccaggcccacccagggccagccagggacatgagtgatgg<br>agggagctcggtgggggctggaaaaggctgccccctcctgacagccccagcgagccttgccccacaggggaatccagagttcattgtctcagaccagccc<br>tctattatttcacgagaagctagaaatttggattttaatatgaagccccccaattgcaagcaactcaggattttttttatttat	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display; E:Insertion-specific detection:PCR	NA	61	1218	119	NA	intron:ABLIM2:NM:032432:13/16	
0	chr8	137292708	137292709	2000103	0	-	Pygmy119; RIP_L1_chr8_137_01	GGAAGGATATTATGGGAAAC	ATCCAAGGATTCAAACACAC	LINE	L1	Ta-1	gttccttttatatatgcatagttctgttaagcagtactcagctatttcctgcatttattttattactttggcaaggaggaaattatttcaaacatgggta<br>gaatcctgcatcctcacatggtctaacctactttttaaaatgggtgaatacttaagagttcgcctataattctcagcccaaatccaaggattcaaacaca<br>caaaggcttccaaaaagtaaaatgttctaatttatttattttcccatatggagcagaaattgtgtgccacaaaacctccattcataacttttgagcttat<br>ttgaacactaagatacatatttcactatattctctaattaaactgaacaaattttttctgaaatagagagggttttcattggcatgttgcaagctttacc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tgttatcttcccttattgcaaagtgtataatttgtcttctcagcaatggcacatatatcttaatgtgacttatgttagaa<br>aaatagcccatcatcagagaatattaattgctcttgttttctccaaaaagagaggaaaaaagtggtattcattgcaagagcagattcatcttcaggtttt<br>aaagggaacttaatgcaatgtttcccataatatcattccaataaatgttaggccctagaatccttccaagtcgccagttctgtttctccattattcattt<br>acaaaaaacccttctctgtagacagtcagattgtctccattttctagattgtctccattaagtacttatttttgtctgaatttctacctttgaaagagtt<br>ataacatgttatttttgagt	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr13	60119099	60119100	2000104	0	-	Pygmy120; RIP_L1_chr13_060_02	GGACTGATTAATCTCTCATC	TTTCAGAACGAGCAGTTATC	LINE	L1	Ta-1	aatacttccacaaatgaaaatgtatgattcctagcactgcctctacccacagtctgtgggagggcaacatcaaaaagccactgggtgctcattaaaggct<br>gcccttagaaaataagaaaccattctccaccagcccacagcaaatagaaagaccaagcaatgtcttcaagggtttcagaacgagcagttatccagccagc<br>cagcagcaaccgcctctcaaatgggaatgtgcatttggcctccaataaagagattctgtgtacttgatgcagcgaattatattagagtagaaacgcggct<br>ctggttgtggctgtttttcttccttagaaaagccaggctgggaatgtgtaggtgtaaagcaattaaccttttaatacaaacatggagattggagctagca<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ttgacccaggaaagagctaaatccattcccttgccaagatgagaagagccactgaagcatccctagcaactctgtccaca<br>gaaaggaagagcctcttagggaacactggggtgtcgcatcacaatcagccagctcaatctcagtccccacacactcccacagagctctgggcatgcatgc<br>gacatttacaggttgaaataggagcacagatgagagattaatcagtcctggggcagggctgtggtgtgacaaaagcatggcccctctggattgaaaaagg<br>aagtgaaaatattaaagtaagctgaccaaatgaggcacggttaatagaaaagatttgttcctctgtttattcaatttctatatatcagagacttggtatt<br>aggagtataatagcagagga	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr4	66492256	66492257	2000105	0	-	Pygmy121; RIP_L1_chr4_066_01	AGTAGTCTTCATCGCAATTG	CATCCTTTCCACTGATATAG	LINE	L1	Ta-1	ttgctatgagatcaggttgcaatacatattcttgaacccataatttttggtggaacccataaatttcaacatttcgttttttatttttattttattttta<br>ttattttaaatgtattgcttctttagaaacctgtggcataatttaaaatatttgtgaaatttttaaatatcttaccactattgctttctaattaaatttt<br>attttgggctacatgaaatatcaattttttaaatcattgagagttatttttattgtcaagcatatagtatatcctggtaaaaattctttgcacacttgag<br>acaacaggtgctctaaatttgttaggtttaatcttctataagtatcaattaggtaaatatggataaaacgctgttcaaatagtttatagtcttgctgatt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tattttgtattttttatttcaattacatgtattttaaccttgactgtggaattgtttattcttcctttaattctattagt<br>ttttcagttctatgttttgaagatatattattatgcgcaaatgtattttttaactgtgtcttaacatttggtcattttacaaaatattcctttttcttac<br>caacaataatgattgttatgaactctactgcttttgatattattatagatattttatttttcatatgactatattttataattatgatatttcatgcttt<br>gattctcatcttgagtctttaatatttagtgtacaactattatagacaggatacacttgagtcgtgatgtttttgtccaatattaaaatctctgcctttt<br>aatttgtatgtttatcaata	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr10	58816001	58816002	2000106	0	+	Pygmy122; RIP_L1_chr10_058_01	CTCTAAGCACAGTAACTACT	ATAGCCTTGAGTCGATAAAG	LINE	L1	Ta-1	gaagggccatgttatcagtataaattttgccagctccaatatagtatatactcttttgttaatctcacattaatcagtctattgacaattgttattcagg<br>aacaaataaataaaagtatataatagttggattaccagcacaatgtaggcttagacatgttccacagaggataagtcaattattaatatttcacttcttt<br>gtttttcacgctgatttcaaggaaggatacaagatatacaatatattatacatcttaattcaataatcacctttgaaaatacacatacaaaatgaaatcc<br>aacttataaatatttagaaataataaatgtttgtgaaattcagttttccatgttgcttttggttaagaaagtaaaatatagtagaaattgatggaaaagt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>gtacataagggaaaaataaaagtgtattagagagaaataaaaagggatgaaaaacagggaactagaaataaaatcagtct<br>ttatattatagtttgaatgtttagaatctccttgtaatcttcaatggtcaggactaaagactaatacttatttaccagaggcatttgcaaatattttgtg<br>ccaggaatgagtctctaaaatacttgcttagacatttatgtgttacacagagaccaaaagaaaaaaaataaaatatatgattttttccattattcatcca<br>ttcacccatgtgtctgtgtgtctatccatctattactttctaaagttccattagagtgttttcagagagtggataaatgactacctggcttatttttttt<br>acaaagcctgtgtgcttctt	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	45/48	NA	NA	NA	intergenic	
0	chr4	147444591	147444592	2000107	0	-	Pygmy123; RIP_L1_chr4_147_01	TGTTTGTGACCATGTAATTG	TCCTGTTTAGTATTTGCAGG	LINE	L1	Ta-1	ccaacaacagacatctagcaagtctttaccttattctgcaacttttgataaggtctccgtgtttatgaccattgttgggaacaagcatctgtctttggtt<br>ggtgtctttatagactcctccaacagcagttatgtttgtgaccatgtaattgataaacaatttaatcctattatctcttaaagtttatcttagaatattt<br>agggtttactttgtcattcttattcaattggactgataggaattctattttaacttcttataacaagttagtagtaagcatataagcatacaaattgtaa<br>aacaagtggattttttttgttttctatgaaatcataggatgccacagtattggagtatagaatttaatgcacaactaaagtgaacaagtcttaggaaagc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>agtacattaagagcaactagattctagacttatttctgccttttatttgcagtgttactatgggcaagttatttaatctc<br>cctagctctaggttcataatttattaaatattatgacaataatatctatcgtaaagggttgttgtaaagattaactgaaatatgcatgcctgtaaacttc<br>ttgtcatagaacctaacacaggtaagtgctctgtagcttctatcatcataatcattattaccaaattccctgcaaatactaaacaggaaacaagtctttg<br>aaatattgaatataaaaaatgtatgtataggctgggctcggtggctcacgcctataatcccagcactttgcaaggctgagatgggcggatcacctgaggt<br>caggagttcgtgaccagcct	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	45/48	NA	NA	NA	intron:SLC10A7:NM:001029998:7/12	
0	chr2	115961128	115962942	2000108	0	+	Pygmy124; RIP_L1_chr2_115_01	TAGCCATACACTCTAAAAGG	CGTGTGAAAATTGCTGCTAT	LINE	L1	L1HS	atgctactattctgcaaacaacccttctggtgggaaaatatatttaaaattctagagagagattttattttcctcttatgctatctttttgcaaataatc<br>caaagaatgaaatggtcgtgtgaaaattgctgctattcacattttagctacaaatcagaaaaacatcatttagttgagtggctatcaactgctccattat<br>ctagcctgaaaaaggctctttatcacaggaagtaccattcataggatcggcacttccacaagaattaataatgattacttacaattatgatgacttttaa<br>ataaaaacgaactttattctggttactttttaggtaaatgcttttattttggatatctaactttatcttatttaccagggatttgattcatttttt<font color="green"><u>AAAA<br></u></font><font color="red">CAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAG<br>GACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATA<br>TCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGCCTTTCTTCACAGAATTGGAAAAAACTACTTT<br>AAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATAC<br>TACAAGGCTACAGTAGCCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCT<br>ACAACTATCTGATCTTTGACAAACCTGACAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAG<br>AAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACATTAAACCTAAAACCATAAAAACCCTAGAA<br>GAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGG<br>ATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATC<br>TGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGTGAAGGACATGAACAGA<br>CACTTCTCAAAACAAGACATTTATACAGCCAAAAAACACATGAAAAAATGCTCACCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACAATGAGAT<br>ACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTG<br>GGACTGTCAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGT<br>ATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCA<br>AATGTCCAACAGTGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGG<br>GACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATG<br>AGATCACATGGACACAGGAAGGGGAATATCACACTCCTGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAG<br>ATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAA</u></font>tatgtatctctcatgccatgttgtaaaacaaacaaacaaagaaacaaaaaacataccttttagagtgtatggctattttgg<br>aaatccaaaagaacagtcttttagttacattgcaatgatcggtgattaacgtttaaaatatagtaagtaaaagatatcttatttgaatgaggcaaacaat<br>taataggctaacacagattccagcaaactttttatttaaagaaccagagggtaaatatttaaggctttgcgggccatattttctctgttgcaactactca<br>actatgctgttatagtgcataagcagccatgagcaataaatagatgtagctgtgttctttacaaaaacagttcttagaaagccagattagcccaatgctg<br>tagtttatggacccc	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intron:DPP10:NM:020868:3/26	
0	chr15	81348690	81348691	2000109	0	-	L1HS516; Pygmy125; AC044907; RIP_L1_chr15_081_01;AC203593	CTCATGTCTTTAGACAACAG;NA	ATGTCCTCATTGTGTTCTAC;NA	LINE	L1	L1HS	agaccacttaggaatggatgcacctgggctgggggagtatgaacacttcctgatgtcctcattgtgttctaccacactgggtcagccccactttgtttta<br>ggcctttgatcccaaatgttgatctgaaccatgatgacaggtggtcagatgcgtttagcttttggggctgtgtcttagctcatgggctgcacctctgtga<br>ctttgggcaggtctagtgcctgagtcctgcctctctctgttggctgggccacatcaagtatattactttgagcttctgagtggtacttctgggccattcg<br>ttcctctcaaagcaggaggctgttgtgggctggaaggggaagccgcctccactcctccccagggaaggagtggatgtgtttcagt<font color="green"><u>AAGAAGTGGCTGGTG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCTGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGATCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAATCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACCAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAGTCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCAAAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTAC<br>AAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTA<br>GGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGG<br>AAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGA<br>CTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATA<br>ACGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGC<br>TAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCAT<br>AAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAA<br>ATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTG<br>CAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAA<br>GGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAA<br>ACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTT<br>TACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCACTTGACCCAGCCAT<br>CCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACT<br>TGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCA<br>TATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGG<br>GAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGATGGGGGAGGGATAGCATTGGGAGATA<br>TACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAAC<br>TTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGCAGTGGCTGGTG</u></font>tagaatggactcagctcattttgagcaaacgccacatcagattcagcttc<br>tgtgtaaactgtgggcagccaaagagcacaggctctttgagaaggaaagctgtggccaacagcttcagcagctgtcattccatgccaggcacagccagct<br>cctctgccctgtccaagcatgtgtcacgctctacctggggagggatgcatggacagcctctcctccttctggaagcagttggtgctactcatctcaggaa<br>gatctgtactcagacctgttctttattcttaaaacacgaagacatttccttcttccccgggacaatgtttcatgtgtcagttccagctgttgtctaaaga<br>catgagtgggtgggaaaacttcagtgtgttgcctc	Other;OTHER	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Badge RM, Alisch RS, Moran JV. ATLAS: a system to selectively identify human-specific L1 insertions. Am J Hum Genet. 2003 Apr;72(4):823-38. Epub 2003 Mar 11.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12632328">PMID:12632328</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Retrotransposon display:ATLAS; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	6151;NA	101;NA	NA;NA	intron:HOMER2:NM:199332:2/9;intron:HOMER2:NM:199332:2/9	
0	chr14	29924376	29924377	2000110	0	+	Pygmy126; RIP_L1_chr14_029_01	GTCCAATATGCCATAAGTAG	CCTCTGTATTCAATGATTCC	LINE	L1	Ta-1	gataaagatattgacaaattatagatttagacaggaattgatttagatgtagatataggcagttggatttgtggctcccgagttcaagagatgaggtttt<br>agctggagaaagtgtggagaaatctgttctctccagaagggtggttgaaacaatggggatgtaggtgagatcagcctgtaggagtatgtgaagaaagggg<br>ttttacagcctttgtttttaatccactccgtaattcatcaatttgttaacctcctctgtattcaatgattcctaaatatctactccactttcacacttgg<br>agtcaatattatttcctctcatttggtgctcctattggtcaagggaacctccaaaagcccacacaagccatgggaagtaagatccactataaatatgtcc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tattataatgaatttatttgttatagttctactgtgaaggcttaagattaccaaatgactatctccttagaagtataaag<br>caagcatagtaagctaagagtcagaatccccttttgtcaactctgacactacttatggcatattggacaaatttttgcaatagctggttactgaggttga<br>tgctctcattatgaatacagtacaatgtattgttttgctctttaagcaatcttatatacacagacatgaaattatcaaaaatgcttttaatccatttcag<br>tgcatgtattataatacactaaatatatttccttttttcatcacagaaagtcaaaagatctgtttttcttgtagtattcataaatgaccttaaaactgac<br>ccacatataacctactaatt	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr10	117375172	117375173	2000111	0	+	Pygmy128; RIP_L1_chr10_117_01	CTTTATACTGACAGAGGAAC	TTTCTTGGCATAGTTGCTTG	LINE	L1	Ta-1	ttgtatggatgaaactgaaaatggaagagttgtcactgtaaattttttgagctgatagaaatttctgatggaattttttactttggaaattttcaaaaat<br>actaagaagcaaataataatttgtatttccacactcataatttaatgctattaatttcttggcatagttgcttgtagttttataccttttttgttaagaa<br>aaatcactattgttgctgaaaaatattacacatgtgtattgaaaatattcaaacaaaaaagtttagaaaagaaagaaaaaatagaccatgaatattctat<br>ctggaaagttttatccataacattctagaaacacctttgcaggtgttttatctgtacataaatacagaaaaatgagggttcaaagaaaggaaacttcaca<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>cattcagtccctgagttcctagaactccattcatgcaatttaatcaagaacctattcccagaactccattcatgcaattt<br>aatcaagaacctagaattggatgccaaggcgcataggaatgaccctatatgcttatatttccaacctcaatgaacaaactcttctttctctagatgacat<br>ttccaatcctccaaatctaagcccctcaagcagccccaacttgttcgttcctctgtcagtataaagattatccttgaatgcatacccttacttaaacaat<br>cctcacactttccccctcatctcctgaattttctccagcctgccttgcagagtaaatattttactaataataatttgtactacatggtatatctccatgc<br>cccctgaaactggtattgac	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intron:ATRNL1:NM:207303:26/29	
0	chr4	167913624	167919642	2000112	0	+	Pygmy129; L1HS118; RIP_L1_chr4_168_01;AC216081	GAAAATGCCAGAAATACCTC;NA	TCTAAGTGCAATTCTCTCAG;NA	LINE	L1	L1HS	aactattttaaaaatttgctttcaacaattcttattttgagggattcagtgagctctcatatgtatgttgcttatctagttgttgtttaattttctcttt<br>tctactcattacaagtgaaagtaaactaataactcagttatttgcatggaaaagaggatgtattggagacatggggacttatgaaaacagtatcaaaaag<br>atgtaatcttcaacaacagggtttgaagagtagtttaaacatttctaagtgcaattctctcagattttgtagctaattttatgttctagtaatacaaaat<br>ctattttgatagttttttttcttgttatactttgaattataaaaataatagaaataaaaatgtagacacttaggattaaaaatt<font color="green"><u>AAATAAGAGATTTGGG<br></u></font><font color="red">ACAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGT<br>GCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTT<br>CCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCAGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCA<br>CCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAA<br>CGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAG<br>GCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCT<br>TTGAAGAGAGCAGTAGTTCTCCCAGCACGCAGATGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCA<br>GCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAA<br>AACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACA<br>GAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAATGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGAT<br>TTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAA<br>ATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAG<br>AAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGA<br>ATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAA<br>CCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACA<br>AAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGT<br>CGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTA<br>AAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGCTGAGAGA<br>TTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATG<br>TAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAA<br>CTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCA<br>TCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTC<br>TCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCC<br>TAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGA<br>CTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATA<br>GACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAG<br>CTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAG<br>CCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAACGCAGAAATAAAGATGTTCTTTGAAACCAACAAG<br>AACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGAT<br>CCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGC<br>AGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCA<br>AGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCA<br>GAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGA<br>AGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCC<br>GAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGG<br>CCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAA<br>AATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAA<br>TCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCT<br>TCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGG<br>GCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCA<br>ATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTATATCTAGAAAACCCCA<br>TCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAA<br>CAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAG<br>GACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATA<br>TCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTT<br>AAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATAC<br>TACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCT<br>ACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAG<br>AAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAA<br>GAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGCAACAAAAGACAAAATTGACAAATGGGA<br>TCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACATCATGGGAGAAAATTTTCGCAACCTACTCATCT<br>GACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGAC<br>ACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATA<br>TCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGG<br>GACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGACATCCCATTACTGGGTA<br>TATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGACCCAACCCAA<br>ATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGG<br>ACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGA<br>GATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGA<br>TGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGAGATTTGGG</u></font>ggcttgaaaaatttacaatttcacaaacttttgggaatttgttaattttcagaagatatttaatg<br>ctcatatctgtgaatcaccatattagaaaatggtaatacaaaggtaaaagaggtatttctggcattttcataaaagtattaaagaatttcagtgtttttg<br>ttgttgtttaaattctcttgtaaaattgtttatagaatcaaaacagagttatctcactcaaacaaacagtaaacatgaattccttatttcctattttctg<br>tgcaagtgctcaccttggttctggaaatgtaaggttaaaaatgtagattaggtccctattaccttgaagcaaatttttaaaatagtatattttgagatac<br>tgatttaaactattctaat	UCSC;UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	50/48;NA	NA;NA	NA;NA	NA;NA	intron:SPOCK3:NM:001040159:7/11;intron:SPOCK3:NM:001040159:7/11	
0	chr3	81008004	81009292	2000113	0	-	Pygmy131; 3917; RIP_L1_chr3_081_01	CTCAAAATGTTCATGCATAG	GGTAGCTTCAGAAAGTATTC	LINE	L1	L1HS	aaaacacaataggtttaatataatagctgctcaatgggactgagtagtcaaccagggattcttgatattcttgatagatgtgtttgtatgtgcttgtaag<br>ctcctgggcagagaaagaagacatcacaggaataggagttatgaaagattaaaactataatagtaatgcacaacacaattgttatgaaatagattcaaac<br>aataaaggaatctgtggtctacatccacttgcctgcccaaagggaattttgttcttataagatgacatgtacaccaccacatcttgtttcacacagataa<br>acattttatacaggtacacacagaacatacatgtacttatacacatttttacatttatgaggtcattaaatacacatgattgtaacacatgcttt<font color="green"><u>AAAGC<br></u></font><font color="red">AATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAA<br>AATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGC<br>AAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAA<br>CTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAA<br>ACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACAC<br>ATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGT<br>CAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTG<br>GCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGAC<br>ACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGC<br>ACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACT<br>ATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGG<br>GGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCAATGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACAT<br>GTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACC</u></font>tttttt<br>tgaaattttgtggaacattctgctttgctgtttataacagttccatgctattctatatcatgacatattatttgaagcctctcctattgatttatattta<br>tattgtttctaaatgtttatagaagcaaaaaaaaaaagaattttttttaaaaacctgcatgtttgtttaacaagaaggtacttttataggaagggtttct<br>cagtattgtatttactatgcatgaacattttgagttttaaggtcagctggttaatgatggatttccttgtagaaatgatataaatttcctggttcaccag<br>cattttatcaaattcctagtttctctgtattttaaaacttttgcaaaagagtgagcaaaacaaaatacttattgttcatatttgctttt	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr3	79299044	79299045	2000114	0	-	Pygmy132; RIP_L1_chr3_079_01	ATGATGACAGTCATTACAGG	GGATAGAGGAATAATATTCC	LINE	L1	Ta-1	agtggtgtgaagggaagtaactagttgggacagataaaaaggaaagtgccctcttagaaggcaattgcatagttttatcatttatatgaagacagtagcc<br>ccaaaatgatgacagtcattacaggtgttataaagatataagttataggaatttagaagaaaggaacagtgacattgatttcatgacaaaaatacaatgt<br>ggatgtacacaaagaagttttactagaacagaaggctaaattctctgtgttcctcttgctaaggaagaaattgctgccttgcaacttctggaattttgtt<br>ggcacaagcaaacaaaaatagtgaagagtaaacaaaaaaacacaaaaattttaactgcaagaaaatttactagcgtgagtttagatgctctggatgaatt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>aggaaatgcttttgtgctattaattttcaaacctaaaagacctttcttcaattttataatcaatattatcagcagtatct<br>tgacctgggaaaaatgaagtgtttggcactggttgtgtcttttaggaaacatgattaggacatgatttgaaattgagtagccagaattctgacagtcttt<br>gttcttaacattggagacacgtggatatgtgcacatcgcctcaggcatagtgaatagcagtagcattaattcagaagcctaagaagatgtctttggaata<br>ttattcctctatccataaaactgttaagtgattcattaattcaacaaatattatgaatcctttactgatttaggcactgataatacattagtgaacaaat<br>taagaaaaatagcggatcaa	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intron:ROBO1:NM:002941:2/31	
0	chr11	26374254	26374255	2000115	0	+	Pygmy133; RIP_L1_chr11_026_01	GCTATGAGGTTAGATCTTAC	TACATGGTTGTTGATCTCAG	LINE	L1	Ta-1	tggctagccatatacagaaaactgaaactggaccccttccttacaccttatacaaaaattaacgcaagatagattaaagacttaaacgtaagacctaaaa<br>ccataaaaaccctaagaatacctaggcagtaccattcaggacataggcatgggcaaagacttcatgactaaaacaccaaaagcaagggcaacaaaagcca<br>aaattgacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaagctatcatcagaatgaacaggcaacttacaggatgggagaaaatttt<br>tgcaatctatccatctgatgcagggctaatatccagaactacaaagaacttaaacaaatttacaagaaaaaaacaaccccctcaaaaagtaggcgaagga<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tatgaacagacacttctcaaaagaagacatttatgcagccaacaaacatatgaaagaaagctcacaatcactggtcatta<br>gagaaatgcaaatcaaaaccacaatgaaataccatctcatgccagttagagtggtgatcattaaaaagtcaggaaacaacagatgctggaggggatgtgg<br>agaaataggaacacttttacactgttggtaggggtgtaaattacttcaaccatttacacttagaagacagtgtggcgatccctcaaggatctagaaccag<br>aaataacatttgacccagcagtcccattactgggtatatacataaagggttataaatcattttactataaagacacgtgcacacatatgtttattgcagc<br>actgttcacaatagcaaaga	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intron:ANO3:NM:031418:1/27	
0	chr1	195767144	195769894	2000116	0	-	L1HS332; Database37; 238700; RIP_L1_chr1_194_01;AC231538	AACTGGGATCTATGATCATC;NA	ACAAGAGTTCACATTCTGGT;NA	LINE	L1	L1HS	aagttttggtttttaaaaagttgcttatgaattacccagtcattccaaagaaataggttagatgttttagatccacaaatcttttcagtgtcacaagagt<br>tcacattctggtggaggtacctagcagagacaaagacttttgttttggaagacagaaatttagttttcttcatttagtcttttctgtgctgtttctatta<br>tttgaaatgctcagtctcattaatacctctctcaaagacagcttagtttactagctgttgaacctcattaaaaaaggtgaaaacaggtacaagtggaaat<br>aatatacactcttttcttcctactgtaaggctactgaagagtagcatcactgtcatgttagaactggctcaagtatccaaattctttt<font color="green"><u>AAAAGATTTGTT<br></u></font><font color="red">TTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAG<br>CCCTTTGTCAGATGAGTAGGATGCGAAAATTTTCTCCCATTTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGT<br>TTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGC<br>CTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAG<br>TTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATC<br>AGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTG<br>TAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCA<br>TATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCC<br>ATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTGTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCT<br>TGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTCTGT<br>TTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGG<br>GCTGAGACCATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCT<br>CCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCAGTTTTCAAAGGGAATGCTTC<br>CAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAGATACGTCCCATCAATACCTAATTTATTGAGAGTT<br>TTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCCTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTA<br>CATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTT<br>TGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCTGGCTTTGGTATCAGA<br>ATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCTTCCTTGTACCTCT<br>GGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTATTGCCACAATTTCAGAGCCTGTTATTGGTCTATTCAG<br>AAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACC<br>AGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTA<br>GTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATG<br>AGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAAT<br>GATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTACGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAA<br>TTGGAAACCATCAGTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGAC<br>ACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGGGGAGGGGGAAGGGATAGTATTGGGAGATATACCTAATGCTAGATGACACATTAGT<br>GGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAATAAAAT<br>AAAATAAAATAAAAATAAATGAAAAAAAAAAAAAAAGAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGATTTGTT</u></font>atgtggtgaatttaattgcctaaaggcaaatttctgc<br>agggacctttgtgatttttgtaatctagataattttcatgttcctactactatttttcaaacttcaatttttatacagttgaaatagtagaaaaatgccc<br>tagagcagcctcagaagacctggaaaagatggacagttttttgataacagtgaggctgtctgtgtatgtttgtatttacgtgattcatttaaaacttcca<br>acaatccagtcagggcaagaattattatccgcgtttttcagatttagaaacaaatggagactaataaatgtgcccagagttctacaagtaataaatagca<br>gaataggaattaaaaagcaggcagactgattctagaacttaggtacctaac	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	58;NA	2850;NA	87;NA	NA;NA	intron:DENND1B:NM:001142795:19/22;intron:DENND1B:NM:001142795:19/22	
0	chr6	110583439	110586460	2000117	0	-	Druze51; RIP_L1_chr6_110_01	ACCCTGAAATAATCAGACTC	AGTAGCTGGTTCTAATCTTC	LINE	L1	L1HS	ggttaataataataattactagcatagaaaaatagaactctgaattcagaggaaggactaactcaccatgaactgggtttatcaagaaggttttcatggc<br>aaaggaaggattcattcaggacattgaaggattaattggattgagctagatagggaagaaagtagacatccattctaaatagaatagtagctggttctaa<br>tcttcattcttaactccaacatgaatcatatctttttttaaaaaaaattgctatgcttatggagttaacattgactcagacaagtcacctgagtgaatta<br>ctcacttattttatcttggggtcaaagaagctcatgtgagggttcctcattccctaagattctccttttatataagattgt<font color="green"><u>AAACAAGAAGGCACTTTAG<br></u></font><font color="red">GGGAAGAGCCAAGATGGCCGAATAGGATCCTCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCA<br>AGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCA<br>GAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGA<br>AGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCT<br>GAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGG<br>CCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAA<br>AATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAA<br>TCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCT<br>TCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGG<br>GCAAAAACTGGAAGCATTCCCTTTGGAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCA<br>ATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCA<br>TCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAA<br>CAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGAAATCCAACTTACAAGGGATGTGAAG<br>GACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATA<br>TCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTT<br>AAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATAC<br>TACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCT<br>ACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAG<br>AAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAA<br>GAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGG<br>ATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATC<br>TGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGA<br>CACTTCTCAAAAGAAGACATTCATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGAT<br>ATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTG<br>GGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGT<br>ATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCA<br>AATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGG<br>GACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATG<br>AGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAG<br>ATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGAAGGCACTTTAG</u></font>aaataatgtagtcctacctgtaatctcttctagaggcaagtaatttccttattggaaat<br>gtctggtataaaaagattttttttctgttcaaattaaatgtcttctcatcactttaagctattgatcctagatttgctttcaaagaactctcttaatctc<br>attccaagccaggaaatgataatggcaaaatagtttaaccaaatctacctttttagtttctgttccagtttgtgcttatagccgataaaaagcatactta<br>ggtgtacattatgatggtatattggtatatcgaggccaaaaataatgcttaagagttactgaattagtaagagccctgatacttagggagaactatagat<br>taagtaaatctatattgattta	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intron:WASF1:NM:003931:3/11	
0	chr6	162101226	162101227	2000118	0	+	Druze59; RIP_L1_chr6_162_01	TGATGTGACTCAGTTGACAT	GGTCACAATGTCAATTGCTA	LINE	L1	Ta-1	tgggttttagggttccccagatttagaaatatgtacacctgaacataaaactgggttcagttttctgaagtctgaccaatgagctgacatactgatagct<br>cactgaggtaaaagaagctttgtgatacaactgaaggatgtttatactttcagtgaacgaggcatagcagcctaaatgcaaccgattgaaccacaaataa<br>tacttctcaatcaaatggccttttatctttcttgtctctaaatatacccttttaccacacagctcgttcttaaaaaaaaaaaaaatccggtggtcacaat<br>gtcaattgctaactttattttctatttatatcgtccactttatgaatacccttttcctcaatttaattagttagtgtcactcacactttaactgggaaca<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ttgtaagactgagctgaatttgaaaacaatgccacgatgtcagactgagtcacatcaattttctaactgcccaccacagc<br>cacagcgcaactcaacgacacccacacgggtatctgcgtcctggaattggacttttacatttttattttaatgaaaatgatgtattacatataagtaaaa<br>caacacctttaaagatggaaaagaccctttttttcaagcctcaatttcagttctagtgggacagccaggtgggagggggtccctggagaaactccaacca<br>gcctgccctctgcagtggggaggagcctggcccctcctcctcctgtgtggaacccgagattcaggctgagcgccggaagccgtctagcagggactctggc<br>ctagcgagagtccctgtttc	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/45	NA	NA	NA	intron:PARK2:NM:013987:6/11	
0	chr8	18498901	18500224	2000119	0	+	Druze62; RIP_L1_chr8_018_01	CCTTTTATGCTGTACTGAAG	AAACCAGAAAACAGTACTGC	LINE	L1	L1HS	aattgggaaacctagaagaaagggataaattactagaaacctacaatctaccaagatgaattacggagaggtagaaaatctgaatggatctgtaataata<br>aggggattgaatctgtaatgaaaaccctcccaacaaaggaaagtttaggagcagatggcttcaccagtgaattctacctaacagttaaacaactaatgcc<br>aatcattctcaaactgttccaaaaaattgaagaggagggaacacttccaaactcattttatgaggccagcatgaccctgatatcaaaaccagaaaacagt<br>actgcaagaaaactacttgccaacatccattatgagcataaatgcaaaaactctaaacataatgctggcaaactgaattcaacagtacatt<font color="green"><u>AAAAGGATC<br></u></font><font color="red">TACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAACAATGGGGAAAGGATTCCCTGTTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTA<br>GAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGA<br>AGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGG<br>GATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCAT<br>CTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAG<br>ACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGA<br>TATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGT<br>GGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGG<br>TATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCC<br>AAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAG<br>GGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAAT<br>GAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTA<br>GATGACACATTATTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAAT<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGGATC</u></font>atatacaatgaccaagtgagatttatccttgggatgtaaaggtggttcaacatatgaaaatcagtca<br>aagtgataaaacgcattaacagatcaaatgataaaaattacacaaacatctcaatgatgcaggaaagcgatgatattaatatcctttcatgatttgaaaa<br>accctcaaaacagatacagtttcaaatgatcttatatgtagaaaacccaaagattccccaaaaacctattagaataaataaattcagcaaagttgcagga<br>tacaaaatcaaccatcagttccatttctatatgctaacaatgaacaatctgaaaaggaaatgaataataccatttacaacagcatcaaaaactattaaaa<br>aatacttaagaataaacatgatca	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	45/50	NA	NA	NA	intron:PSD3:NM:206909:9/13	
0	chr10	110442952	110442953	2000120	0	+	Druze87; RIP_L1_chr10_110_01	CCATCTTGGAAAGTGATTC	CATAAGTCAATTTCTAGCTC	LINE	L1	Ta-1	aggaagatgactgggtaggaagcaccaggaatctatctcccccttacataacaattaagcttgcagaatctgccttatatgactgttttggatctatgga<br>gtctattaaagccttgaagcttccaagagaaggcttcaacactcagttgtggttaactttggtcaatttcagcttttagctcaacagcagctactacttc<br>cccatgcacagccccatggcaggcaccggtgcatgtgctcctgaagcagcttccatgcatatcgtaggaactggggtgtgggacagcaataaagacctgt<br>cttctaaatattggggatctgtgttctgaactctgattgctgtttctaatcactgaggcctaagccagaggtgagcagctattattgtttcacacccccc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>cattaaaacaaacccaattcccttccgttgaatgacgttgaggagattgaaatgtccactgccttttttttttttatcac<br>tttcctttttctctttttcttctttgtggagccaaactacactaggacattgaaaagcaactgcatactttggaacattttaaaaattactgtgcatacc<br>caggcaaaggctcatgctcagaaaacacctgaagagaatttaagtttacacctcaggttgatcatcagcacagagacagcctacagaaattgaaaacaac<br>aagtcctggagaaagaggagaatctgattttcagagctgccacattattagttcagatgtccagttttcaacaacaacaacaaaactacggggcatacaa<br>ttaaattggaaagtgtggcc	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr10	18583817	18583818	2000121	0	+	Druze90; RIP_L1_chr10_018_01	CAAGAGGCATGATCAGATTT	TTTCAGTTCTGTAGAAGCTG	LINE	L1	Ta-1	aataaacaaatgttgccactctcattactgagaaaaaaaaatgattgattgttggtctgaaaaacaaaacaaaaaccaaaaaaaatcccgtacatcaaaa<br>gacaacccagacactttggtgagaaataaaggaaaattagagaaaggttttcagttctgtagaagctggaatgaaatagagtgtgcattttggtggctaa<br>agaagtggagttcagtggaagctgcaagcagccagatagagattttgttcaggaccctaaggagagaaatgaggactggaccaagaaatagaagtacact<br>ggcactgacatgaaaacaaaggtttatcacagatcggattactgaagactgaacttcagaaatgcatggaaatgttcaggaatgagagaacacgggaacg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tgtatgtattacattgggtttcattttctgtttctgtccttgcacttacctacttgaattccccaatatctaatagattc<br>attcattttccttatctcccatcttcagctccttagcatgagagcatcatcttttgcttgggtaaaagtacttcctagctgatctccctggcttctctct<br>agccgtcttccaatctgtcttcaactgtcctgccaaagtggattttaaatggcacaaatctgatcatgcctcttgtgggaaagaaatcccactgctctta<br>gtagaaagagaaaagatccccagcgtggccctcatgatcttgcctgataatcacctgcctctctaacctcatcttctcctccctctcttactttattctc<br>caactgcttaagctgggcct	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	50/48	NA	NA	NA	intron:CACNB2:NM:201597:2/14	
0	chr15	98748763	98748764	2000122	0	-	Druze91; RIP_L1_chr15_098_01	AAAGGACAACTCGCTCTTG	GTACTTCCAATACCAAATTG	LINE	L1	Ta-1	attatactcaaaaacattcatgcttctttttataacttacataggttgatgaaccctttgctccatctggtatttattttggtgtaagaaatgaggtaaa<br>taggggtttttaaaaatggtttgctggttgtccccaaggcatttgctgagcatttttttcttttcctttgtgctttgcaatgccactcttaaattatttt<br>gtgtctcttgtctctttctggacttcccattctgtttcaccgaagtacttccaataccaaattgttttaattagtacagccttataataggttttcttat<br>ggttagatcaataatccgtttttcctcttgtctttcccaatattactggcccattcaacatctttatttgatttccaatatttattttattccaagctag<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>aaactggatgaattctagtttttgttttttgttaggctcctctcaaaatcccaatggtgtgctattttaagattgcttta<br>aatttatacacttagaagaacggacaatttatcatattgagtattcccatcgaagagcgagttgtcttttcagttaaattctttatctcttagtaaaata<br>gggaattttatttgtatacaccctgaacatttcctttaacatttcacggaggtaattttctctttgattattattgtgaataaaatctttacttcctttt<br>attttttttaatacttagaaaagctattgatttttgtatgatagctgtgagatatgcctctccgctcaagtttctaataggttttcagcaattttggggt<br>tttctatgtatagaaagtca	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr1	74757118	74757841	2000123	0	-	Pygmy130; RIP_L1_chr1_074_01	AATATGGACGATTTAAGGAG	GCTTTGGCTTGACTATAACA	LINE	L1	L1HS	gaaaatggcagtatccaaaggagaaatagctgtaagaacatgctgtccagtcagggcatccagagcagagaaggtggatctgtgctcccacagataggac<br>acccacactgccacagggaccctgtggactattcaatcttcccttcacctctgaatgacacacattataaacttaaagctttggcttgactataacatat<br>cttcattataggtacttgtcctcacattagaaaaatttcatgtataaaatgtaattttcttttaaagatatattctgtggggttattttgtaagactatt<br>tactttataaaaaagattcttagaagtttttatctctattctggctttcttatgattttagtttaaaaatcaattcaaaaattacacttt<font color="green"><u>TAAAGTAAGG<br></u></font><font color="red">CAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATT<br>GTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCA<br>TGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTAGAACCAACCCAAATGTCCAACAATGATAGACTGGA<br>TTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAATATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCAT<br>CATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGG<br>AATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGAAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGC<br>ACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAGGGGA<br>AAAAAAATAAAATAAAATAAAAAA</font><font color="green"><u>TAAAGTAAGG</u></font>taatttgttttaaattgaagactaaatactccttaaataatccatatttgtaaatgttgttttaaa<br>aacacaccctttacttatggaaataaattatataaaagcaaaatatgtgttcaaaacactaatataataattttgagcttaaaaaacagatattgttttg<br>aaaacactattagcgatgcattatgaagcctctgcactgacagtgtgctccccaggcaggcatcaggtgaaacacgggaaccataagcttcgtcacgatt<br>agtagaatccactgagatctgtaagcagtgggaaccatagagccaccctaaaaagaaggcatattgaggtgggagaatcagagatccttgaggtaagaaa<br>agcatctcagaagcaaccaagagt	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intron:TNNI3K:NM:015978:23/25	
0	chr6	153071684	153075482	2000124	0	-	52577; Druze95; L1HS461; RIP_L1_chr6_153_01;AC214249	TGAATTCTGTTTCACCTGAA;NA	AAACATCAAGCTAGGATTCC;NA	LINE	L1	L1HS	aaaaatatttaacaaatgtgcaattataatcccccaaacagaggaaagggtggatggagctaaaaacattttgaataaatgaggctgaaatttttcaaaa<br>ttagtgaaacaaattaatctacaaatcaagagtctcagtaacatcaagcagaatatatataaagaactatgcacgtcatagtcaaacagctgaagatcaa<br>aggttaacaaaaaaaacttgaacacagccaaattacaaataataataacattacattcataaaagacaattatttaaatactcacttttaataagacacg<br>gtgatattttaaagtgattttaaaaaagctgtcaactcagaattttatatccagcaaaagtatcccttaagtatagtagtg<font color="green"><u>AAATAAATACTCTTTCAGG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGGGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCAGGAATTGAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTC<br>TCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATG<br>TAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGG<br>AAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACAT<br>ACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCT<br>AACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATA<br>GAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAA<br>AAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACA<br>CCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAAT<br>AGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGT<br>ACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGAT<br>ACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGA<br>ATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCC<br>AGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCT<br>CAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCA<br>TTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGG<br>AAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAA<br>TCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAG<br>AGCCAAATCACGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGA<br>ACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCAT<br>ACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAAC<br>CAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGTTACAGTAA<br>CCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTT<br>TGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGAT<br>CCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTA<br>CCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAA<br>GAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGTGCTAATA<br>TCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAG<br>ACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGT<br>TAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTT<br>CAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCGTTACTGGGTATATACCCAAATGAGT<br>ATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGGT<br>AGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTG<br>GAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACA<br>GGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGG<br>TGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAATAAAA</font><font color="green"><u>A<br>AATAAATACTCTTTCAGG</u></font>tgaaacagaattcaaattaatcaccagcacacctacactaaaacatgtgctgaagaaaatccttagtctggggataatgaaa<br>actgggatctttaagaagaaattgagaccatcagaaatagtatcagagtaaatatagaagactcttttccatcaatttctttaaaatatatttttctagc<br>tagagcaaaaattaaaatattttcatatgaaatgtatagtttatatagatttaatatgtaataattataatacaaagaattgggacaggatataaataaa<br>tctattagcttgattgattgatttagtttttaagagattttagagacagggacttactatatcatccaggctggtctcaaagttttgggctcaaatgac	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intron:MYCT1:NM:025107:1/2;intron:MYCT1:NM:025107:1/2	
0	chr1	191816264	191816265	2000125	0	+	Druze88; AF417139; RIP_L1_chr1_190_01	GAATCGAGTATTTCTCACTG	TCTTCTCACATGAGGAAACT	LINE	L1	Ta-1	cttctcacatgaggaaactaaagtgaaaacaagctaattaatctccaaattatatcctgaaatgaaagcagatgcacgttactgcaaagcatatctttcc<br>ttggtcctcactgaagttgccttaaggagaggcgtggaagaggccactatggcaatcaatgaacaaaatcatctgtaattttaaatggaaacaaattgat<br>atcccacatgaatggttttctttttccctgcaatacaatcttgacatattacagcaatatcttgaggagtttattttggggattaagtacaaatagcaat<br>gcaaacctgtaaccatagtctagtgcccaaagagaccacattttgtgttgaaataatacacaatagagaaagctgaatgggtaaaataaaatccttcttt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAATGAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>nnnnn</u></font>aagaaaaataatctcttctctgagttattaaagtttgcagcctccttggttttcgatgagcttatttaaaatctacgggggga<br>aaattagcagcttaaaatgctgacagcatgaaaaaacagtgagaaatactcgattcttcaaggagtccttccttcaccccccaaatagtttgatttttcc<br>tatttatctcctttgtcttttgataaaaagaaaagaaccctttgagaggacaattttgaggtcttaatccatacttctttccagtttatcttttacattc<br>aaaacaaacacctttaaaagaatcctttttggtctggtagtgctaaatgctaagcttaggtatcagcagctaattagcttcacatctggggggattgtca<br>atgaactctatctcctg	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display; E:Insertion-specific detection:PCR	 TSD unavailable	50/48	NA	NA	NA	intergenic	
0	chr2	180708400	180708401	2000126	0	+	Pygmy127; RIP_L1_chr2_180_01	AGCATAAGCCATATAAGTCG	GAGACATATTGGTAAGAAGC	LINE	L1	Ta-1	tttcccttaagcatttttcacagagatttcccattaggtactctctctttctcctactagtctgtgagtacctagaagactgaatgtatgttgtatttat<br>atttctaactctgaaccagcacagttcctggcacttgttactatgtcattggtacctgttaaataaatgactgactatgctgcatatgaataggcaatac<br>acacaaatggactgggataaaggtgtgagcttctcaggtgtaggctggatggtgttatattaatattctggttgccttgccatgtgttgggcacagaaaa<br>agtgctcaataaatactcattgaatgtacttcttgacaagacttcagcaggctgctcactgcagcctcaacatcccaggttcgagccatcctcccaacta<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>agcctcccgagtagctggtactacaagcatgtgctgccacaccctgctaatttttgttttgttttgtagaaacagggttt<br>ctccatgttgcccaggcttgtctcaaactcctgagctcaagcaatccgccagcctcagcctcccaaagtgctgagattacaggtgtgggccactgtgcct<br>ggctcaccaagtaaatttttaaaggatatattaatgttaaagtaaaaagtattctgtaagagattgggaactattttaaaaagagagagattcttactgt<br>agtgaaaatttgtatgtagttccccaaagaataaaatcagcaaaattcccagatgtgttttcagggttctttgaggatttctgatccgaaggaattagaa<br>aggttagaaaatataggtct	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr6	29970892	30028191	2000127	0	+	AC004200; RIP_L1_chr6_030_01	ATTTGCGGCCGCCAGGATGCCATGAAAAATAGCC	GCATTACTGTATCAGCCTGTAAGCG	LINE	L1	L1HS	caaagaggaccaggatgccatgaaaaatagccttggctagaaataggtcatttgatccttggctaattggcatctctctacattctctggtatacaatgt<br>tcaatctgatgtgcaaggcaattgtatctcgcaaagaatttgagaatttgatatgttgctcacattttaccacacatacaagtgaattaaacttttacag<br>aatagaaaaaaccattgtcgagcaaaataaattaaatgaaaagacataaaggaataactagtgatgaaatagcaataagaatggaaaacacaaaagagct<br>gcttttaaagcaatgttagaagcacaaaataactgcatttttcagaatcatactggagtccaaatcacttctaacacatctaatt<font color="green"><u>AAAAAACACAGTGAA<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCAACACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGACTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGAGATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATTTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATGATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGGGATGAGCAATGAATAAC<br>ATTTTAGTATAGCTAAGCAATATTTGCATATTTATGTGTAATGTGTTTAAGCAAGTATTGGAAGATATTTATACAAATAATAACATTACCCAAAATTCAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAAAACACAGTGAA</u></font>agatgttaaactgatcaatggatgcccactgaatacccagtttttgaaaaatcttgttcctagattggagtta<br>accatttccacctaccacatcaaatcaaatcgttgtcgtgatgctaagctagctgtacagacaaagatgtgagacacattttttctaattgcaaagcacc<br>ctgattaggcaaatatttttgtagaagcttgagtaagaaaattggcattttgggcattcttaaacggaattagtaacttctgaggaaaaagaaagatagt<br>tatgattgtaaaggcattattatacggcaccagtcttgggactctttgatctagctactgtattttctcaactttcttgtaactcatcaaagagaacatt<br>aatattaaagac	Other	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr4	113035408	113041444	2000128	0	+	AC004704; RIP_L1_chr4_113_01	ATTTGCGGCCGCGGGTGAAAATCAAATGACCTTGGG	GGAGTCACGATTGGTTTAACGC	LINE	L1	L1HS	gcaaaatagtcttttcaacaaacggtgctggatacttacatgcaaaaacactgaatctagacacaggtattattcccttcacaaaaataaacttaaaatg<br>attaatagagctaaatgtaaaatacaagaatataaaactcctagaaaatgaagtgggtgaaaatcaaatgaccttgggtatgatgatgacattttagata<br>taatgccaagggtatgatccatgaaaaaaataattgataagctgaacttcataaaaaaaaaaaaaaacttctgctctgtgaaagacaatgtcaagaagat<br>aagacaaaccaaagactgggagaaaatattttcaaaagacacatctgctaaaggactgttatccaaaatatataaagaactcttaaa<font color="green"><u>ACTCAACAATAAG<br></u></font><font color="red">GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACAGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGCCGCAGGTCAGTGGGTGCGCACACCGTGCACGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGATTCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGAGTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCTGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAGCGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CCCCTGACCCCCGAGCAGCCTAACTGGGAGGCATCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTATTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAATGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACAATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCTAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTAATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAACGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCCACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACACAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTTTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGATCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATTCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACTTGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATG<br>GATAGGAAGAATGAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTACGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTGAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGC<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACA<br>CTTTTACCATGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGACACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGCGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAAAAAAAAAAAAAAAAAAAAAAAT</font><font color="green"><u>ACTCAACAATAAG</u></font>aaagcacacagcctgattttttaaatgtgccaaaggccttaactgatgcc<br>tctccaaagaagatattcagatagcaaataagcatacaaaaagatgctctaccttgtatgtcatttgggaaatgcaagttaaaacaacaatgtgatacca<br>ctgttacgcaattgatgaacctacattgacacatcatgatcacccaaaagtgagcagaaaggtaaacaaagcctctttcttgtgaatgtgaagaaatgag<br>agtaggataaagagtgtaaaagtattaagaaaagaattactaaaacaaatcaagctttccctggatcacttcctatgaagacatatacaattcctctttt<br>taaaagaaaatttacctaaaaccacaatgcatgtata	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr12	3478587	3484657	2000129	0	-	AC005908; RIP_L1_chr12_003_01	ATTTGCGGCCGCTCGAAGTCCTAAACCCCCAGTACC	ATAGACACATCATCTGGTCTCTGCC	LINE	L1	L1HS	gcaaaacagaattaataagagttgctttgcaatgttgttgagtaaattaaataaggcaatgtttacaaagtgactgacacagcacccaacccataatatg<br>tatgctaaaatggtagctcttgctatagtgattgctactgcacaaggaaaaagccatgataaagaccctgggaagccagtgggtgcagtgtgcagctgag<br>tgagaagcaggaaagagataagggagagagaccactttctcggacttgcaactattctgaggccattcatcagccatttgctatatggcgggcaccgtgt<br>tgagtaacatcatgggttgaattgtgtcatccaaaaacatgtgtcgaagtcctaaacccccagtacctgtgacagtgagctcatt<font color="green"><u>TAAAAATAGGGTCTT<br></u></font><font color="red">GGGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCAACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAG<br>GTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACC<br>TGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTT<br>TTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAG<br>TCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTG<br>GGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCA<br>GACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACACAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTC<br>CCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCACCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAGCAGACCTGCAGCTGA<br>GGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAA<br>CCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGTCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGA<br>ACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAA<br>GAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTC<br>GAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGA<br>AGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCT<br>GAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTC<br>AGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTT<br>AAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTTGGCAGAAACCCTACAAGCCAGAAGAGAGTGG<br>GGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTA<br>TAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCC<br>GCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCA<br>AATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAG<br>TGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAACAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAA<br>GGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATT<br>CAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACT<br>CCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGC<br>TCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATT<br>GACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAAATCA<br>GGATTAAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAA<br>GATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCC<br>TACAAGAGAAAGCAGGAAAGATCCAAAATTGACAGCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGC<br>AAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAA<br>CAAAATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCC<br>ACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTC<br>TCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCC<br>AGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGGAAAAGAGGGAATC<br>CTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGACACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACA<br>TTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCA<br>AGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCC<br>TTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCA<br>CAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGT<br>GTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATG<br>ATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAAT<br>CACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAAT<br>CCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGC<br>TCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCA<br>CAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCAC<br>ACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCC<br>TCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGG<br>AAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACC<br>TAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACA<br>AAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGA<br>AAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAA<br>GTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATG<br>CAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAG<br>GAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGA<br>CCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATA<br>GCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATG<br>ATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCTAACACCGCATATTCTCACT<br>CATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGGGGGGAGGGATAGCA<br>TTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGT<br>ACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAGAAAGGAAAAAAAAAATAAATAAATAAATAAAAA</font><font color="green"><u>TAAAAATAGGGTCTT</u></font>tgcagatgttatca<br>agttaagatgaagtcatattggattagagtggcccctaatccaacaagactgttgtccttataagaagacgtatagacacacacaggaaagaatgccctg<br>tgaagatgaaggcagagaccagatgatgtgtctatagccaaggaaggctgagcatcgttggccaccacgggaaaccagaagaaaggcaaggaacagattc<br>tccatgaagacttcaagaggaaccaaccctgctggcatctggatttcagacttctggcttccagaactgtggaagaagacatctcgttgttttaaagcca<br>cccagtttgtggtactttattacagcagacctaggagggtaatacaggtgatgaaactacaaagataaatt	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:PRMT8:NM:019854:1/10	
0	chr7	30445388	30451439	2000130	0	+	AC006027; L1HS46; RIP_L1_chr7_030_01	ATTTGCGGCCGCAGCAATCCCACTGCTGGATATATAC	GAAACAGACACTGGCTTGCTTCTATG	LINE	L1	L1HS	agagaagggagagaaagtgagagagcttaactgagcttaaatgttaacaagaatcattttctgagaagataatttttattatttttcatagtttccaaat<br>aaaattacctgtgttccttttgtaatccaataaaaattataatgaaacaaaaagctttaaaaagcctcaagaatcaaaaccacaatgagacaggacctca<br>cactcattaggatgggtactgtcaaaaagagaaaatagcaagtgttggcaaggatgtggagaaactagaatgaactgttggtgggaacataaaatggtgc<br>tgctgccgtggaaaacagtatgatgattcttcaaaaaattaaaaattaccatgtgatccagcaatcccactgctggatatataccc<font color="green"><u>AAAAGAATTGGAGG<br></u></font><font color="red">GAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCG<br>GGTTCATCTCACTAGGGAGCGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAA<br>GCGCAAGGGATCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGA<br>CCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAG<br>ATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATAGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGA<br>GCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTA<br>AGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGAC<br>CCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGAGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCC<br>TGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACTGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAA<br>AGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAG<br>CTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTT<br>GAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAAC<br>TACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAA<br>GTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGT<br>GATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAA<br>TACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGC<br>AGCCAGAGAGAAAGTTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACA<br>AGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGGTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCA<br>AAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCGCCAGCTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGG<br>GGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACA<br>CATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCA<br>CCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTCGAAAGGATCAACAAAAT<br>TGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAA<br>GACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>CAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTG<br>GTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTT<br>TATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGAC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAGCAGGTGCTGGAGAGGATGCGGAGAAATAGGAACAC<br>TTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>CATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCACTATTCACAATAGCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGG<br>TGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG<br>ATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAA<br>AACTTAGAGTATAATAAAAAAAAAAAGAATCTAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAATTGAAGG</u></font>cagtccttgaagagacatttgtatgcccatgtgc<br>acagcagcattattcacaacagccaaagcatagaagcaagccagtgtctgttcttggatgaatgagtaaacaaaatgtggcatagccatgcaatggagta<br>ttactcagccttaaaaaagaaggaaatcctggcggggcacggtggctcacgcctataatcctgacactttgggagaccgaggtgggtggatcatttgagg<br>tcaggagtttgagaccagcctggccaacatggtgaaaccccgcctctactaaaaatacaaaaattagctgggattggtggcgggtgcctataatcccagc<br>tactcgtgtggctgaggcgagagaatcgcttgaacccagaaggcagaggttg	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	55	6382	326	NA	intron:NOD1:NM:006092:9/14	
0	chr2	102549235	102555282	2000131	0	-	AC007278; RIP_L1_chr2_102_01	ATTTGCGGCCGCTGTTAAGGGCATTACCAAGCAGAG	ACCTTGTATCCTGTGGCCTTGC	LINE	L1	L1HS	acatgttaagggcattaccaagcagagataatggtagaccaatattattcatgaacaaagatacatcaatcttcaacaaaaatattagcgataggatcca<br>ggaatatattaaaaactactacatgatgatcaagttgggtttatctcaggaatgaaagggtagttcaacattttaaaattaataaaaaagttaatttgtt<br>tactacattaacaaaataaaaaataaaaatgatttgattactgtattagattctgataaagcatttgatgtaatatacaatccattaatgtaaaaattct<br>taaattagaaatagaagagaacttactctgataacaggtgtctattaatccccctccacagttaacttaatgcttactggttaatt<font color="green"><u>AATGATGAATTTTC<br></u></font><font color="red">GGGGGAGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGTGACGCAGAAGACAGGTGATTTCTGCATTTCCATC<br>TGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGCATTGCCTC<br>ACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCG<br>CTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAG<br>CAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAA<br>CTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCT<br>GCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGG<br>GTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGC<br>TGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCAAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATA<br>AAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCCGTTCCTCACCAGCAAC<br>AGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGC<br>AAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGG<br>CTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCG<br>AGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTA<br>CCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGACCAACGTTCAGA<br>TTCAGGAAATACAGAGAACTCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAAT<br>GTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAG<br>TGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACT<br>TTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCCCTAAACATGGAAAGGAACAACCGGTACCA<br>GCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGA<br>TCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCAT<br>CAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAA<br>AAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCA<br>ATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACTCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAG<br>ACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTC<br>AGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAA<br>ATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAAC<br>TCAGGATTAAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAAT<br>AAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAAT<br>GCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAACAGAA<br>GGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGAT<br>CAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGAT<br>CCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACA<br>CTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAG<br>TCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGA<br>ATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGA<br>ACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGAT<br>GCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAA<br>GCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAAC<br>CCACAGCCAATATCATTCTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACAT<br>AGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGAC<br>ATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAA<br>AATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGTGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGG<br>AATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCA<br>TGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGGCTTTCT<br>TCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCAT<br>CACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAG<br>CTCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCT<br>GGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAG<br>ACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCA<br>ACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGTGAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGG<br>AGAAAATTTTCGCATCCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAA<br>AAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAA<br>ATGCAGATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAA<br>TAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGGAATACCATT<br>TGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACA<br>ATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAA<br>ATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTC<br>ACTCATAGGTGGGAATTGAACAATGAGATCACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAG<br>CATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACAT<br>GTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAATTAAAAAAAAAA</font><font color="green"><u>AATGATGAATTTTC</u></font>cccctctctacatcttttcaacgttgtgttagagatgc<br>tagttagtacaataaagcaggaaaaaagaatacaaactaccaatattggaaagatacaaagttatgtttatttgaagatgatatgattgtacacatagaa<br>aatgttgatagatccacataaaacatactacatttaataagtgaatttagcaaggccacaggatacaaggttaatttgaaatttaattgtaactgcatat<br>accagcaacaaataattgaaaaataaaatcaaaatgcagtaatttaaaagcacatagcatagcctaaaaatattaaaatgctgagtgataaagttagtga<br>aagatgtacacaaaatctacattaaagaatataagacattaattacta	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr5	79110470	79116517	2000132	0	-	AC008496; RIP_L1_chr5_079_01	ATTTGCGGCCGCAATAAAACCAGTATGGTCCTGGGG	TTAAAATGCCCCCATGCCG	LINE	L1	L1HS	gtcaggagcaggctgatggaggaggctacgcatcctgattctaaagatcatatcaaatacaaactagcaaatagaaaaaaaaagtcaggaagcggcaacc<br>taatctaccaggaattctaaattataaagctacaataataaaaccagtatggtcctggggcataaatagatggatcaatagacagattataaaggtcagg<br>aatagacccaaacatatagtctcttgagtgtataataatggaagtatttcagatcagaagggaaaatgatgggttttcctgatgggacagctagatagcc<br>atactaaaaaaaaaaaaaaagtaggatttcctacttcacacaatctactgagataaattccagatgataaaatacctagtttt<font color="green"><u>TAAAAATGAAATTACTG<br></u></font><font color="red">GGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCGGG<br>TTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGAGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGC<br>GCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACC<br>GGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGAT<br>CAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCTCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGC<br>CCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAG<br>TGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCC<br>CTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTG<br>TCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAG<br>ATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAATGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAACAAAGCT<br>GGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGA<br>AAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTA<br>CGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGT<br>TTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGA<br>TGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACATTCAGATTCAGGAAATA<br>CAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAG<br>CCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGGAGAGAGTGGGGGCCAAT<br>ATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAG<br>CAAATGCTGAGAGATTTTGTCATCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAA<br>ATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACA<br>CATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGATCCATCAGTGTGCTGT<br>ATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGG<br>TTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGA<br>GGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACA<br>TTAATAATGGAAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGAATACCCAGGAATTGAACTCAGCTCTGCACC<br>AAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACAT<br>AGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAG<br>AATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCT<br>TTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAG<br>AAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATA<br>ACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTG<br>ATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAAT<br>ACAAACTACCATCAGAGAATCCTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTGGACACATACACTCTCCCAAGA<br>CTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAG<br>ATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAA<br>CTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCA<br>AAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGT<br>TCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAA<br>AATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAAT<br>ATCATACTGAATGGGCAAAAACTGCAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAG<br>TTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTA<br>TCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCA<br>TTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTA<br>CAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGT<br>AGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTG<br>GAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTG<br>ACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAAT<br>AATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGG<br>CTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCA<br>TAAAAACCCTAGAAGAAAACCTAGGCATTACCATTGAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAA<br>AATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTC<br>GCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGA<br>AGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAA<br>AACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTT<br>TTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCA<br>TCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGAC<br>TTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTC<br>ATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTG<br>GGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGAT<br>ATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAA<br>CTTAGAGTATAATAAAAAAAAAAAATTAAAAAAAAAAATAAAAATAAA</font><font color="green"><u>TAAAAATGAAATTACTG</u></font>tattggctactacaaaaaaacatgagtgaataaac<br>atacacacacacacacacacacacacagaaagagagaggggggcaggcggcatgggggcattttaaaatatgctacccaagttaaaagctattttcaaaa<br>gagattgataaatccaactcaattattataaaaaatatgcacggtaaaaaatttttaaagatttgaaacttatctcttaataggaaagctaacttcctta<br>aaaaaacagagcttctacaaatcaaaaagaaaaaataccacaatccaagagaaaaaaaattgctaggaaatgatcagtttatagaaaaagaagtactgta<br>gtggctctgaaccatatgaaaagatgttcaacctaataaaagaaatgc	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:CMYA5:NM:153610:9/13	
0	chr15	68808908	68814562	2000133	0	+	AC009269; 79799; RIP_L1_chr15_068_01;AC203602	ATTTGCGGCCGCCCACCCAAAAGACACCGTACTTG;NA	CGCAGTATGCAGTTTTTCAGCC;NA	LINE	L1	L1HS	gaaagcagtttggagatttctcaaagaactgaaaatagaactaccattcaacccagcaatcccattactgggtatatactcaaaggaaaataaatcattc<br>cacccaaaagacaccgtacttgtatgttcactgcagcactattcacaatagcaaaaacatggaagcaacttaggtcccatcaagagtggactggaaaaag<br>aaaatgtggtacatatataccatggaatactacttagccataaaaaaagaatgaaaccatgtctttgctgcagcttggatgcaatcagaggccactatcc<br>cacgcaaattaatgcagaaacagaaaaccaaatcccacatgttcctgcttaccagtgggaactaaacactgagtacacatggacat<font color="green"><u>AAAGATGGGAACAA<br></u></font><font color="red">CCCTTCCGCCGCCTGTGAAGGGACCCACCGAGCTCCCAGGGCCTTTCTGCTGCTTCCTCTACCCCTGTATTTTGCTCGGCTCTGTAACTTGACTCAGCTT<br>CAGAGAGTGGTTAAAAATTCTCAACAAGAAAAAGCTGTGGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCG<br>ACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTC<br>CTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAG<br>ACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAA<br>AAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTC<br>ACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAA<br>ACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGA<br>AAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGA<br>AATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTG<br>ATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCA<br>ACGTTCAGATTCAGGAAATACAGAGAACACCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAA<br>GGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCC<br>AGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATACAGCCAAACTAAGCTTCATAAGTGAAGGAGAAA<br>TAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAA<br>CCGGTACCAGCCACTGCAAAATCATGCCAAAATGTAAAGACCATTGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATA<br>ATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTC<br>AAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGG<br>AAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTA<br>AAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAA<br>GAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGA<br>ATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACC<br>TATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCA<br>AACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAA<br>GGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATA<br>GCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAG<br>CTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTT<br>TGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATC<br>ACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCG<br>ACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAAC<br>CAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAA<br>AAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATAT<br>CCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCAT<br>CCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGAT<br>GCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCT<br>ATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCT<br>ATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTT<br>GCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCA<br>ATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAA<br>ATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAG<br>AACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAA<br>TGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGC<br>TGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAAC<br>AGAACAGAGCCCTCAGAAATAATGCCGCGTATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATA<br>AATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTT<br>AAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAA<br>GCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTA<br>CAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAA<br>CCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCC<br>ATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGAT<br>GCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGA<br>AATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCA<br>CTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAG<br>CCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCG<br>CATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGG<br>GAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAA<br>TGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGATGGGAACAA</u></font>aagacactagagggcagacagagggatgggg<br>ggaagggctgaaaaactgcatactgcgtactatgctcaatacctgggtgacaagatcaatcataccacaaacctcggcaacacacaatacacccaagtaa<br>caaacatgcatatgtacccctgaatctaaaagttgaattttttaatgcagattcataaacaaacaccattctaaatctaaatccatctctaaaagtgttg<br>tctaggaatatatctgagaagctaacattcctaaaccccttaaatataggaaactattttaaggagtctgaagaattgatgtttattctctcaattaaaa<br>aaaatatcaccactaaccaaactgggattatactaatagtcctccagcttgcttc	UCSC;UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:UACA:NM:018003:1/19;intron:UACA:NM:018003:1/19	
0	chr8	135152112	135158197	2000134	0	-	L1HS166; AC021017; 238091; RIP_L1_chr8_135_01;AC193119	ATTTGCGGCCGCCCAAGGTGCTAGAATTACAGACGTG;NA	CGACTTCCACAGAGAAAACGGAG;NA	LINE	L1	L1HS	agtcaggagcaacaacagagctacactccctaaaactacagatttgtcattgttgtatacgtaatataaattattttatttttgagacaaggtcttgctc<br>tgtggcccaagctggagttcagtggcacaatcacagctcactgcagccttgatctcccaggcttaagtgatcctcccacctcagcctcttgagtaggtgg<br>gactacaggtacacatcaacatatccagctaagtttttaattttttatttagttgtagagatagggtcttgctattttctccaagctgctctcaaactcc<br>tggcctcaagtgatccttccacctcaacctcccaaggtgctagaattacagacgtgcccagcccataatataaattgtgtgttt<font color="green"><u>AAAATGTTGAAGAATG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACCATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACAGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACAACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACTGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAAGTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGCATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCACATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCATTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACTTGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGCTGATTAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATGTTGAAGAA<br>TG</u></font>taaaaaatgagaaccatgagaaaggaataagatactaccaatagcatttcaggcatgttttaaaagaacacatagaacctctagaaaagaaaatgtga<br>tcactgaaattcaaaagtatttgagacaatgtaaaggacagtaaataagacagcttgaggaatcggtgcaaggatttgacaggaagacattgccaagagt<br>tcagaagagagagaagagatgtaaagtaggaagaagtagaagaaaagaagggtagaatggaaaagtttagcctaatttgtttcagaaaaaatggggtact<br>agaggtgatagggggaaatatttttcaaaaggaattcatgataaaattcagaaatcatcagacttaggtagccagcttgatggaaa	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	6204;NA	102;NA	NA;NA	intergenic;intergenic	
0	chr3	100258191	100258192	2000135	0	-	L1HS373; AC022838; RIP_L1_chr3_100_01	ATTTGCGGCCGCTGCAACGGCTAAATACCATGTG	TCAGTGGCAAAACACGAAAGG	LINE	L1	L1HS	attattaatcaggccatctgaacattctagtaatcacctggaaacaacctaaaatcatttctaactataggttaatgtggatttgggacaaaaatttttc<br>ccttaaaacatctctaagattagtgtattccagttctataatgtgaatattggctggcacattgctgacagttagaaagaatgcaacggctaaataccat<br>gtgcaatttctcaaatcacaaatttgaaggatggtttgcgtcatgtcccaacaggacatttttgggaaaataaagtgttgtttcttcataactattgcag<br>ctaataaaattctaagccagctagataattttctttcattggttaaatgcattgtcactaggtattttgtcggaaaatcttgtt<font color="green"><u>AAGAAGAAGGGCTGGG<br></u></font><font color="red">GGAGCCAAGATGGCCAAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGT<br>TCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCG<br>CAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCG<br>GCTTAAGAAACGGTGCACCACGAGACTATATCCCACACCTGGCTCGGAGGTTCCTATGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATC<br>AAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAATCTCGAACTGGGTGGAGCC<br>CACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAATCTCTGCAGACTTAAGT<br>GTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCC<br>TGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGT<br>CTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGA<br>TGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTG<br>GATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAA<br>AACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTAC<br>GTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTT<br>TAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGAT<br>GTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATAC<br>AGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGC<br>CAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATA<br>TTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGC<br>AAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAA<br>TCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACAC<br>ATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTA<br>TTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGT<br>TGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAG<br>GAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACAT<br>TAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCA<br>AGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATA<br>GTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGA<br>ATTTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTT<br>TGAAACCAACGAGAACAAAGACACCACATACCAGAAGCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGA<br>AAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAGAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAA<br>CTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGA<br>TAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATA<br>CAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGAC<br>TAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGA<br>TGGATTCACAGTCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAAC<br>TCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAA<br>AAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTT<br>CAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAA<br>ATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATA<br>TCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGT<br>TCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTAT<br>CTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCAT<br>TCTTATACACCAACAACAGACAAACAGAGAGCCAAAACATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTAC<br>AAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTA<br>GGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGG<br>AAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGA<br>CTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATA<br>ATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGC<br>TAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCAT<br>AAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAA<br>ATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTG<br>CAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAA<br>GGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAA<br>ACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTT<br>TACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCAT<br>CCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACT<br>TGGAACCAACCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCA<br>TATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGG<br>GAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATA<br>TACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAAC<br>TTAGAGTATAATAAAAAAAAAAAATAATAAAGTATGATACTCTTTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGAAGGGCTGGG</u></font>aaaatgcgtgcgctaggagca<br>tgtgtgggggtgtggtacagagaactctctttccaccagctcatacagttctaaagcacatattttcttattaaactcagatgttatttttctaatttgc<br>ctctggatttttaatgacatttactccaaacgcaacatttaatagctctgtgaaaataataacaaaattgaacagaagggaagtgtttagtacgaaaaag<br>ttggatttaaattcattttcccagttctcttcttccctttcccctttcgtgttttgccactgacaataattccagtgtcaacaatgagaaccttagggat<br>aagtcaaaatataaatgatctacatttatttggttaactgctggaggaaagacaacatcccgt	Other	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	6294	215	NA	intergenic	
0	chr7	62246631	62252673	2000136	0	-	AC069285; RIP_L1_chr7_062_01	ATTTGCGGCCGCGTGAACATTATACCGCTGATTGCC	AGTTCGCTTGAGCAGCAGTTTC	LINE	L1	L1HS	gtctttaatcactcagcttaataagaaagttgaaaataaataatttacattgtcctactatttacattttactaactccatatgtgtagaggtgtaaggg<br>atttttaaaagagcaacaaggttgagacttgtaaacctgaatttagatagaagatgaatcttcaaaagtattgataactttggaaaataatttttaagaa<br>aggcatgacagccagtgattatctagtttcacaatttgttgtcagagtttgtgaaggctttactataaaaactataggatgaacaaggaatccttgatgc<br>tgagattttgtcttttgtcttaataggtgaacattataccgctgattgccaaagcagacacaatttctaaaaatgatttacagactttt<font color="green"><u>AAGAGTAAGAT<br></u></font><font color="red">GGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACAGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAACTCAAGGAGGCCTGCCTGCCTCTCTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGAACCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAACCTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAATGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>GGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAC<br>AGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGTCTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCATGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAACGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTGGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTGCAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAACAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACATGATTG<br>TATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCCTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACTGCTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATCTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATGCTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACGTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>CCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACCACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACCAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCAGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAACGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAACATTAAAAAAAAAA</font><font color="green"><u>AAGAGTAAGAT</u></font>aatgagtgaattgattagcagtggcctccagatatatcagctccca<br>gcagatgaagaaactgctgctcaagcgaactcctcaattaatgtaagtttcagtaacaatatctgacaaagaggctataaatgagtttttatccagaatc<br>cagtgtgaaaattttttaatttttttattttgaaaaacttcttttgagaattgattctttgtaaacagatttatttagatttaattcatacaccgtgttc<br>ctcaaggatattggcttataattttcttcttggaagtatattttctttcttggatatcagggggatgcttgcctcatagaatgactctgaaggtgttacc<br>tcctttttctattttttcaaagaatttgaggatgttttatatt	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr7	110134289	110140338	2000137	0	-	AC073326; RIP_L1_chr7_109_01	ATTTGCGGCCGCAAATGGTGCTGGGGTAACTGGC	CAAGAAGTGTCCATGTCTTTTGCC	LINE	L1	L1HS	ttcacagaatcagaaaaatctattttaaaattcgtatggaaacagaaaaagagcccgaatagccaaaacaatcccaagctgtaagaacaaagtcagacgc<br>atcacattacctgacttcaaactagtaatgtaagtccacagtaaccaaaagagcatggtactagtacaaaaacagacatgtagaccaatggaacagaata<br>gagaacccagaaatcaaactgtatacctacagccatctgatctttgacaaacccaacaaaaataagcaatggggaaaggactccctattaaataaatggt<br>gctggggtaactggctagacatatgcaaaagaaagaaactgaacccttacctttcaccatatacaaaatcaactcaagatggatt<font color="green"><u>AAAAATTTAAGTGTA<br></u></font><font color="red">GGTTATCTACAAGAGTCATACGAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGTGACGCAGAAGACGGGTGATTTCTGCATTTC<br>CATCTGAGGTACCGGGTTCATCTCACCAGGGAGTGCCAGACAGTGTGCGCAGGCCAGTGTGTGTGCGCACTGTGCGCGAGCCGAAGCAGGGTGAGGCATT<br>GCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTCCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATA<br>TTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCACTGATTGCTAG<br>CACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCGTTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGC<br>TCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAA<br>CCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCA<br>AGTGGGTCCCTGACCCCTGACCCCCAAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACAGCAGGGTATTCCAACAGACCT<br>GCAGCTGAGGGTCCTGTCTCTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTTCATCACCATCATCAAAGACCAAAAGT<br>AGATAAAACCACAAAGATGGGGAAAAAACGGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCA<br>GCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAAATACTCTGAGCTACGGGAGGACATTCAAACCA<br>AAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGGATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAAC<br>CAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATG<br>AAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTG<br>GTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGT<br>TCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAA<br>AAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAA<br>GAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAA<br>ATACTTTACAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGG<br>TACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGA<br>CAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGA<br>CCCATCAGTGTGTTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAA<br>CAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGG<br>GATCAATTCAACAAGAAGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGA<br>CTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTG<br>AACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAAAATATACATTTTTTTCAGCACCACACCACACCTATT<br>CCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACT<br>AGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCA<br>GAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCAC<br>TAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAG<br>CAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAA<br>AGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCA<br>CCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCCAGAAGAAATGGATACATTCCTCGACAC<br>ATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAA<br>AAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAG<br>AGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTT<br>GATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCT<br>GGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAG<br>AAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGA<br>CAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTC<br>AACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAAGAAGTCAAATTGTCCCTGTTTGCAG<br>ACAACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGT<br>ACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATAC<br>CTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACA<br>TTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGAC<br>TTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGA<br>GGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAA<br>CAGAGCCCTCAGAAATAATGACGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATG<br>GTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAAC<br>GTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAA<br>TGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAC<br>ATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCC<br>ATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCA<br>GAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGG<br>AGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATA<br>CCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTAT<br>TCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCAT<br>AAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATA<br>TTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGG<br>GATAGCATTGGGAGATATACCTAATGCTAGATGACTCGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATACGTAACTAACCTGCACAATGTG<br>CACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAATTAAAAAA</font><font color="green"><u>AAAAATTTAAGTGTA</u></font>acacctcaaactgtaaaaatcctagaagaaagcca<br>aggaaacatcattctgggtatcaaccttgggaaagaatttatgaccaagtcctcaaaaaaattacagcaaaaacaaaaattgacgagtgggacctaatta<br>aactaaggagcatctgcacagcaaaagaaactatcaatagagtaagcaggcaacctacagaataagagaaaatattcacaacctatgcacctgacaaaga<br>tctaatattcagaatctataaggaacttaaggaaatcaacaagcaaaaacaaccccattaaaaagtgggcaaaagacatggacacttcttgaaagaagac<br>atacaagtagccaacaagcatgaaaaaatgctcagcatcaccagtcatca	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:IMMP2L:NM:032549:5/6	
0	chr1	245917099	245923131	2000138	0	+	AC091612; 237935; RIP_L1_chr1_244_01;AC229898	ATTTGCGGCCGCTTACCAGAAGGTGGGAAGGGAG;NA	TTACACAGTGCAACACATCCGTTC;NA	LINE	L1	L1HS	tggcagtttatctatttctttatatgtactaatatttgcagatctgataatattaatattttaccagaaggtgggaagggaggagaggtgaagagaagtt<br>gcttactgggtacaaaaatacagttagatagaatatattctactgtttgtagcacagtatggtgactgtagttagcaaaaattaattgtatatttcaaaa<br>tagctagaagtgaagatttaaatgtttccaacaagggaaatgatcaatctttgaggtgatggatattctaattaccctgatttgataatcacacattgta<br>tgcatgtatcacagtgccaatatgaaccctataaatatgtacagttacagttatactttgataaagatactgcaaaagtt<font color="green"><u>AAAAAATGAAAAGAAAGATC<br></u></font><font color="red">GAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGTGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACTGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAATGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGGTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTGCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAATCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACGAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAGTCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACTCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGTTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGACTTAAATGTTAGACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>ACCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTGAGAGTATAATAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAGAAAAGAAAGATC</u></font>atattaaaacaatgaggaaaaatcttgatgatattcatttataaaga<br>acggatgtgttgcactgtgtaatagtgttaaaatacagtttaaatgtgcagttataaaaatgttgttactagtgagggaaaaaataaaatgaaataaaac<br>aaaaacttaagcttggaaatagactctagcatacataatgttttggtatttaataatttttgcatttaaaatcagtaaagaagtaaattatctagaaaga<br>aattgtggagtaattaattagtcctttgggacacaataactcagctcaaaaccacattctctaaaccaaaattaattacaaaacaaatatgatttcaaat<br>agtaaaataaataaaactacagaagctatcaga	UCSC;UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr1	172825888	172832139	2000139	0	-	AL021069; RIP_L1_chr1_171_01	ATTTGCGGCCGCAAGATGCCCACTTTCACCACCG	CTGAATCTGCACATTGCTTTGGAC	LINE	L1	L1HS	tgcccactttcaccaccgttattcaacatagtcctggaaatcctagctaaaggaatcagataagataaagaaataaaggtcatccaaactgaaatggaag<br>aagtcaaattatccttctttgcagatgatataatcttatatttagaaaaacctaaagacttaatcaagaaattattagaactgagaagtaaattacataa<br>aattacaggatataaaatcaatatatgaaaatcaatagcatttaaatatgccaacaatgaacaatctgaaaaagaaatttaaaatttaagaatccaattt<br>gcaacagctacaaataaattatctaggaataacttaaccaaagaagtgaaagatctgtacaataagaactacaaaacactgatg<font color="green"><u>AAAGAAACTGAAGAGG<br></u></font><font color="red">AGGGAGGAACCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCCACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCAAGGCTTGCTTAGGTAAACAAAGCAGCAGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CCCCTGACCCCCGAGCAGCCTAACTGGGAGGCAGCCCCCAGCAGGGGCACACTGACACCTCACATCGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTCAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGACAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACATCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACAGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCATTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCCAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTCAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAAGAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGATAAC<br>TGGCTAGCCATATGTAGAAAGATGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATGAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCGATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACTTGGACACAGGAAGGGGAATAGCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAATAAATAAAAAAAAAAAGAAAAAAAAACAATACAGCATCTAAAACAAAGGAGGTATTAAAAAATAACTTTACAGT<br>CTCATATTCATTTATTTAACCAAAAGTTGTTAGAGCATTAACTTTGTGTATTAGTCCATTTTAAATTGCTGTAAAGGAACACCTGAGACATGGTAATTTA<br>TAAATAAAAGAAGTTTATTTGGCTCACAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAACTGAAGAGG</u></font>tcacaaaaaatggaaagatattccatgttcat<br>ggattagaagaatcaatattgttaaaatgtccaaagcaatgtgcagattcagtgtaatccgaatcaaagtatcaatctcattcttcacagaaatataaat<br>aaataatcgtaaattttgatggaacccatgaaagacctggaatagcctaagccatcctaaacaaaaagaacaaaactggagaactcacattacctgactt<br>caaattatactacagagctactgcaaccaaaacagcacgggactggcataaaaagaaacacatagaccaatggaacagaataaagaatccagaagtaaat<br>ccatacatctacattgaactcatttttgacaacatgccaagaacatacattg	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:RABGAP1L:NM:014857:13/21	
0	chrX	82201251	82207300	2000140	0	-	AL022308; RIP_L1_chrX_082_01	ATTTGCGGCCGCTGGGACTTACATCAGCAGCTTCC	ACAGGTGTGTTAGCCAGGGTTGTC	LINE	L1	L1HS	tctgatcatcccaacaatggttaatattacaagtcaacttgactggcttgaggatgcccagatggctggtgaagcactgttcctgggtgtgtctgtgagg<br>gtgttgccagaggagattgacatttgagtcagtggactggaggatcaagattcaacccagtgtgggtggacaccattcaatcggctgccagaatggcaag<br>aacaaagcaggtggaagaaggcatgataattttgcttgctgagtcttgtggctttctctctctcttcccatgctggatacttgattcctctcctcctgcc<br>cttggacatcagactccaggttcttaggcctttggactttgggacttacatcagcagcttcccagggggtcttgggccttcagctt<font color="green"><u>AAGAGTGAGGGCTG<br></u></font><font color="red">AGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCAGGTCACTCCCACCCGAATATTGCACTTTTC<br>AGACTGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCACTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGTCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACACCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACAGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTCTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGACAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAATGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCACAAATCAACAGAATATACATTCTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAACAAATATAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTGCATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGAAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGAAAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACTGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTTGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAAGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGTTGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAATGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATTCTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAATGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATTGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCTCTCT<br>GAAATAATGCCACATATCTACAACTATCCGATCTTTGACAAACCTGAGAAAAACAAGCAACGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACAATTATACAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTTCACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACTCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATGTTCTCACTCAT<br>AGGTGGGGAATGAACAATGAGATCACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACGTTAGTGGGTACAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTGAGGGCTG</u></font>cactgtcagcttgctgattttgaggcttttggactt<br>agaccgattccatgctactggcttttttctttccccagcaggcagacagcctattgtgagatttccccttgtaatcgtgtgagccaattctccctaatta<br>actcccttttatatatacctatatcctactggttttgtccttctggacaaccctggctaacacacctgtgagacccaattagggtatctgatccccagga<br>ctgtaagaaaataaatgtgtgttgttttaagccattaagtttgtggtaatttgttacaacatcagtagaaatctaatacacatagaaacaaaatgtccat<br>ttccaaatattgattttcacattttagtaatgtctatgcacatgaaccaa	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chrX	141393300	141399382	2000141	0	+	AL031586; RIP_L1_chrX_141_01	ATTTGCGGCCGCTCCTCGTCACTCAAAGTGTGGTC	AAAGACAACTGGCAGGACAGGTAG	LINE	L1	L1HS	aaggcaagccagttttagaattttactgaatgtagcagaaaaccccggcaataataatctttgattaaattatcctcatgctcccctactttgggaacct<br>cttttcatgatactgatactgtgattacaaacacacgtacacacatgcataaatgtggtgagtcctaatccagggaagaatgatatgctttcctaaactc<br>tagcattaagagaaaattgggatggattgtgagagtagcagaagagatgacagaacttgaaattatatatgaatggccttgagtagtaaataaaaatgat<br>acacagagccaaggtattttagatcctcgtcactcaaagtgtggtctctgtaccagcagcaccagcatcatctgggagcttgtt<font color="green"><u>AGAAATACAGCATGTC<br></u></font><font color="red">GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACC<br>AGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGGCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACTGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTGGCACAGCAGGCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAACTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCCGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGTGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAAGAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGAACAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAAAAAGAAATGGGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGA<br>TGCGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATA<br>CAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAG<br>CCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCAGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAAT<br>ATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAG<br>CAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAA<br>ATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACA<br>CATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAATGTGCTGT<br>ATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGG<br>TTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGA<br>GGAGCTAACTATCCAAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACA<br>TTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACC<br>AAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAACCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAACTGACCACAT<br>AGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAG<br>AATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCT<br>TTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCCACAAGAG<br>AAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATA<br>ACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTG<br>ATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAGATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGACAT<br>ACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGA<br>CTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAG<br>ATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAA<br>CTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCA<br>AAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGT<br>TCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAA<br>AATTCAACAACCCTTCATGCTAAAAACTCTCAAGAAATTAGGTATTGATGGGACGTATTTCAAAATAAAAAGAGCTATCTATGACAAACCCACAGCCAAT<br>ATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAG<br>TTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTA<br>TCTAGAAAACCCCATCTTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCA<br>TTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATGCAACTTA<br>CAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGT<br>AGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTG<br>GAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTG<br>ACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATAGAGATCAATGGAACAGAACAGAGCCCTCAGAAAT<br>AACGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGG<br>CTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCA<br>TAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAA<br>AATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTC<br>GCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCCAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGA<br>AGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCACCATCACTGGCCATCAGAGAAATGCAAATCAA<br>AACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTT<br>TTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCA<br>TCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGAC<br>TTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTC<br>ATATCGTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTG<br>GGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGAAGAGGGGAGGGATAGCATTGGGAGAT<br>ATACCTAATGCTAGATGACACATTAGTGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACCTGCACAATGTGCACATGTACCCTAAAACTTA<br>GAGTATAATAAAAAAAATAAATAAATAAAAATAAAATAAAATAAAATAAACTGTCCTAATGCCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATACAGCATGTC</u></font>a<br>gtccccatctcagacttactgactcagaatctgcatttttatcaagaacacaaggttattcatacgacacttaagtttgagaaatacttatccagagcat<br>tttgggtatgggatttacctgctttttttcttactgtcatagtcatagcaagtataaacaaaccaagtataagtcaattcaagttgccctacctgtcctg<br>ccagttgtctttactgaatggagagaattttgcactgagggctgacaggactcattacattgtttgtctctgggagctggctgagcttgcaagcgtttgt<br>ggcagattgccatttgaattgtttttcctgtctctttctgttaccaaaaagtataatattgcacaggggggaaaatgtagagg	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr6	2363014	2369040	2000142	0	-	AL031768; RIP_L1_chr6_002_01	ATTTGCGGCCGCCCCAAAGTGATTACAGGTGTGATCC	AACACAGAAACCCAGTAAAGTGGC	LINE	L1	L1HS	agtggtaaattttgttatgtctattttaccacaatttaaaataagtaaataaaaatcatttacagataaaaggtacattcaaaatataaaatacatcaat<br>gaattttaaagtaacagagtaccaaaagtttttttatattgtttcagaatctatgttgcaattaacttttaaaaattatcatttatttaaatttatgaag<br>actcaaagaatatttataattatccaaaagactatttaaatacttctccttttgcaactacatatttatgtgaagccagattttccttatacgtttcaac<br>caaaacaacattttgcaacagactgaatgcaaagcgtgaatgaaaatccaacttcttctattatgccagacatgacagaggtttgttt<font color="green"><u>AAAAAAAAAAAA<br></u></font><font color="red">TTGTGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTG<br>AGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCA<br>CCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGC<br>TTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGC<br>AGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGTGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAAC<br>TGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTG<br>CAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGG<br>TCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCT<br>GAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCAAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAA<br>AACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACA<br>GAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCA<br>AAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGC<br>TCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCAATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGA<br>GAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTAC<br>CTGAAAGTGATGGGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGAT<br>TCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATG<br>TTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGT<br>GGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTT<br>TATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAG<br>CCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGAT<br>CAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATC<br>AGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAA<br>AAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAA<br>TTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGA<br>CTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCA<br>GCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAA<br>TTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACT<br>CAGGATTAAAAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATA<br>AAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATG<br>CCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAG<br>GCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATC<br>AACAAAATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATC<br>CCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACAC<br>TCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGTTCTGAAATTGGGGCAATAATCAATAGTTTACCAACCAAAAAGAGT<br>CCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAA<br>TCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACAAAAAAAGAGAATTTTAGACCAATATCCTTGATGAA<br>CATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCAAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATG<br>CAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAG<br>CCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACC<br>CACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATA<br>GTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACA<br>TGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAA<br>ATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGA<br>ATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCAT<br>GCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTT<br>CACTGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATC<br>ACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGC<br>CCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTG<br>GGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAAATGGATTAAAGATTTAAACGTCAGA<br>CCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAA<br>CAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACCACATGGGA<br>GAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAA<br>AAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAA<br>TGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAAT<br>AGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTT<br>GACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA<br>TAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAA<br>TGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCA<br>CTCATAGGTGGGAATTGAACAATGAGATCATATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGC<br>ATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATG<br>TACCCTAAAACTTAGAGTATAATAAAA</font><font color="green"><u>AAAAAAAAAAAA</u></font>gtaaaacgatgccactttactgggtttctgtgttgaaaatacagcaatttttcataaaaac<br>atcatttatgtcaacatgtaataggcttatgtttatgtgaattaatgaaagatgtttgcatatgaattaaatattttaaatctgcccagtttgggtttct<br>aatatggtaattgtctataggtacgctccacataatgataaactatttggggtccttgataattttttaaagtgacaaggggcactgagccccaaaactg<br>tgagaactgctgcattcagatggctgtattacagggcatagagcatttaatctcctcctctggctcctctgcccctggaagatggcagttttaatagaga<br>gaatgtagacagtcccattctgggggc	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr20	7044794	7050846	2000143	0	-	237986; L1HS104; AL096799; RIP_L1_chr20_007_01;AC216061	ATTTGCGGCCGCAGCCACCATGTTCTTTGTGGG;NA	TGCTACAGAGGAGTCCATTTGACTG;NA	LINE	L1	L1HS	tagaccaatgggaatccttcttgccaagccaccatgttctttgtgggaaacaaacatggcttatatttagaaggagaagaggaaggacattcatgacgac<br>acctcacctgatctgagcctcagcctgtgtcagcttggaaatttatgatgattatttcttcctatgggtaaaattaattgatggtgctcatacacaaaga<br>tagtttataagaagtacatcctaaaaccttctgttgttaaatgcaagtacaattttaaaaaaagcaaggatatttcagtattactgttagaaactttctc<br>atggtttctacgctatggagatgtggttttgtttgaactgtgaatgatattacatttttaatattatactagagaattttattcattt<font color="green"><u>AAAAATTTTGTC<br></u></font><font color="red">GAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACTGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACTTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTATGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGGCAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAG<br>AAGGAAAACTAACAACCAGAAAGGACATCCACACCAAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAA<br>AAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAG<br>AATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTG<br>AAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGA<br>ATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAA<br>AAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGGCCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGA<br>ATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAAC<br>GCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAG<br>AAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACA<br>TTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATCCTTTACAGACAGGCAAATGCT<br>GAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCC<br>AAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAA<br>TATTAACTTTAAATGTAAATGGACTAAATTCTCCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGA<br>AACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATC<br>CTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAA<br>CTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAAT<br>GGGAGACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAACAGAC<br>CTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAA<br>GTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCAC<br>TCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACC<br>AACGAGAACAAAGACACAACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGG<br>AAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAAT<br>CAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCTAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCG<br>CTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTA<br>CCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCA<br>GGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTC<br>ACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTT<br>ATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCT<br>CAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATA<br>CGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACGTGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAAC<br>AACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATCTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACT<br>GAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTGGCC<br>AGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAA<br>ACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATA<br>CAACAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGAT<br>GTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAA<br>TCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAAC<br>TACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAA<br>CTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCAC<br>ATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTGAATAAATGGTGCTGGGAAAACTGGCTAGCCAT<br>ATGTAGAAAGCTGAAACTCGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACC<br>CTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACA<br>AATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTA<br>CTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATG<br>AACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTA<br>TGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTGTACACTG<br>TTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTA<br>CTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACC<br>AACCCAACTGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTT<br>TGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGA<br>ACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAA<br>TGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAGCCTGCACAATGTGCACATGTACCCTAAAACTTAGAGT<br>ATAATAAAAAAAAAAAAAAAAAAAAGACTCTAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTTTGTC</u></font>atgttctactaagttttcacaatcaatcttctcta<br>aactatgtgagctgctggtcttattgaaagtttaaccaggtttgcaacggcctcatctattcctcagcctgctgtgtgaccttggatcttaccattggtt<br>ctctgcttattggcacttccatataagacagggcagaagacacaaaaaagcatggaacccctgtcagtcaaatggactcctctgtagcagttccagagca<br>aaaaaaatgggatgaaaagttgaaacatttgactttcaagaggtttgggcataatatggaaattccatccacaactcctctatttaccattcttggttat<br>aaactaaatttcgtctttttctgagatttaagattccttgtctatgcttggtg	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	59;NA	6196;NA	131;NA	NA;NA	intergenic;intergenic	
0	chr22	27388955	27395311	2000144	0	+	L1HS86; AL121825; RIP_L1_chr22_027_01	ATTTGCGGCCGCGCAACTGTGCAGTATCAGGAAATG	GACAGAGGAAACTGCTGACTCCAC	LINE	L1	L1HS	agtacacacaatataaatgctagtctagctataataatctcaaacacctatacttacagaaggaagagtgcttccacacaaatactctataatttatatg<br>gttcttccaaataagcctaatgaaaattttatttttcataaaatatatttggaatttgtggccaatttcttgaacaattattattaaatggttttcataa<br>atctttgtgaatattaggaagcaatggattcaacaaaagcattatgtgacagtggagcaatattcaaaactcctgttgctacacaagccaaaaatgacag<br>ggatccaagacaactcaaaacaaaaatattacacacagaacagaagcaactgtgcagtatcaggaaatgcaatacactttttctagtgat<font color="green"><u>AAGAAACTTC<br></u></font><font color="red">CACCGGGCGCGGTGGCTCACACCTGTAATCCCAGTACTTTGGGAGGCTGAGGCAGGCTGATCTCGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTGTACTAAAAATACAATAAATTAGCCAGGCGTGGTGGCGAACGCCTGTAGTCCCAGCTACTCGGAAGGCTGAGATAGGAGAATGGCGT<br>GAACCCAGGAGGCAGAGATTGCAGTGAGCCGAGATAGTGCCGCTGCACTCCAGCCTGGGAGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAGAA<br>AGAAAGAAAGAAAAAGAGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACACAGAAGACGGGTGATTTCT<br>GCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCG<br>AGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCAC<br>CCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGA<br>TTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAGCCAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCC<br>GGGAAGCTCCAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACA<br>GCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGC<br>CTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAA<br>CAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGAC<br>CAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTC<br>CTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATT<br>CAAACCAAAGGCAAAGAAATTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGC<br>TGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAA<br>TGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGT<br>CTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGG<br>CCAACGTTCAGATTCAGGAAGTACAGAGAACACCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAAT<br>GAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAA<br>GCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAG<br>AAATAAAATACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAA<br>CAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATC<br>ACAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGA<br>GTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAA<br>TGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAGCAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATG<br>GTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTAC<br>AAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCA<br>GGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAAAATATACATTTTTTTCAGCACCACACCAC<br>ACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAA<br>TCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAAT<br>GAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTT<br>ATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAA<br>AAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTT<br>TTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGAT<br>ATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCC<br>TCAACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACC<br>AACCAAAAAGAGTCCAGGACCAGATGGATTCACTGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATA<br>GAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAA<br>TATCCTTGATGAACATTGACGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTT<br>CATCCCTGGGATGCAAGGCTGGTTCAATATACACAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATA<br>GATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTA<br>TCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTATCTCACCACT<br>CCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTG<br>TTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAA<br>TCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAAT<br>AAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGG<br>AAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTAC<br>CAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAA<br>AGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGG<br>AACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTA<br>ATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGA<br>TTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCA<br>AAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAAC<br>CTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAA<br>CAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTG<br>GCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAG<br>GATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACT<br>AGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCG<br>GCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATG<br>CAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACA<br>CCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTAGGAGGAGG<br>GGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCA<br>CAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAGAAAGAAA</font><font color="green"><u>AAGAAACTTC</u></font>acatggggccacatgtctaataaaggtgactga<br>atcccaaaattatattggtaacatggaaattcctgataggggaagaatattcccagaagtgtgaccagttagggccaaaataaaaggtacaatttaccca<br>attattatacctaagtacccggccttattaaatatatgttcctcaatatcaaattgtactaaaaatcaggaaactaagctcctagtagagaactggtcaa<br>agggaagatctttgtggagtcagcagtttcctctgtcctacaatttggcaaaataatctcataagcacaagaaggttaatatgcttgcattaaaaatgtt<br>aagttacttataatccaatttaaatgtaagttcaaataccttaacatgttcacatta	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	6154	410	NA	intron:TTC28:NM:001145418:1/23	
0	chrX	95195636	95206247	2000145	0	-	AL137845; RIP_L1_chrX_095_01	ATTTGCGGCCGCTCACTGTAATGCAAGCGTGGTTC	TGCCAAGAGATAGGGGTCTAGTTTC	LINE	L1	L1HS	caaactatttcaaaaaatacagggggaaggaataatttcaaactcattctacaaggccaatattaccctgataccaaaaacacagaaagacacataagaa<br>aaagaaaaaggccaataattctgatgaatattgaggcaaatatcttcaaccaaatactaacaaaccaaattcaacaatacattagaaaggtcattcatta<br>tgaacaagtgagatttatcactgtaatgcaagcgtggttcaaaatactcatatcaatcaatgtggtgtatcatatcaattgaatgaagaataaaaaacgt<br>gattattttaattgatgctggaaatcatttaataaaattcttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaa<font color="green"><u>AAGAGACAAAG<br></u></font><font color="red">GAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAAAAGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCA<br>AGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACAATAATAATGGGAAACTTTAACACCCCACTGTCAACATTAGACAGACCAATGAGACAGAAA<br>GTTAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAATAGAATATACATTTT<br>TTTCAGCACCACACCACACCTATTCCAAAATTGACCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGACCACAAATTATAACAAACTGTCT<br>CTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGACTCACTAAAAACCGCTAAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTG<br>GGTACATAAGGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACAACATACCAGAATCTCTGGGACACATTCAAAGCAGTG<br>TGTAGAGGGAAATTTATAGCACTAAATGACCACAACAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAG<br>AGCAAACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGGGAGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCC<br>AGCGTGAGCGACGCAGAAGACAGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTG<br>TGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGA<br>CGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCT<br>CGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCAT<br>TGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCT<br>CTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCA<br>CGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGC<br>ACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGA<br>AAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAATGCAG<br>AGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGAC<br>GATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAA<br>TACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAA<br>GAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAA<br>TATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTAT<br>CCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGA<br>CACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGAC<br>TAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATA<br>TCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAAAAAATACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAG<br>CTCCTGAAGGAATCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCA<br>TCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAAT<br>TAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAA<br>ATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAACAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACGAAGA<br>TCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACC<br>CAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGAGAGACTTTAACACCCCACTGTCAACATTAGACAGA<br>TCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAA<br>CAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAAT<br>TATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTG<br>CTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACAACATACCAGAATCTCTGGG<br>ACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGACCACAACAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAA<br>AGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACC<br>CTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATC<br>AAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAA<br>ACTAGAAAATCTAGAAGAAATGGGTACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGTCCAATAACAGGC<br>TCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGG<br>TACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAG<br>AGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATC<br>AAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAG<br>CCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTAT<br>TGATGGGACGTATCTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACT<br>GGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTC<br>AATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGAT<br>AAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGT<br>GAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGC<br>TCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAAT<br>TTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGC<br>ATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGT<br>ACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAA<br>AAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCT<br>TATACAAAAATCAATTCAAGATGGATTAAAGACTTAAATGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAG<br>GCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAACCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGC<br>AAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAAT<br>GAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCA<br>AAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCAT<br>TAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAG<br>TCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCT<br>ATAAAGACACATGCACACGTATGCTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAA<br>AATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTC<br>AGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCA<br>CACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCA<br>TGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTGAGAGTATAATAAAAAAAAAAAAAAGAAAAAAAAAATAAAGAA<br>AAAAAAAAAAAAAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACAAAAAAACCCTTCAAAAAATTAATGAATCCAGGAGCTGGTTTTTT<br>GAAAGGATCAACAAAATTGATAGACCACTAGTAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGATGCAATAAAAAATGATAAAGGGGATATCA<br>CCACCGATTCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTCAA<br>CACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGCTTACCAACC<br>AAAAAGAGTCCAGGACCAGATGGATTCACAGCAGAATTCTACCAGAGGTACAAGGAGAAGCTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAA<br>AAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATCGTGATACCAAAGCCTGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATC<br>CTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATC<br>CTTGGGATGCAAGGCTGGTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAACCAAAGACAAAAAACCACATGATTATCTCAATAGAT<br>GCAGAAAAGGCCTTTGACAAAATTCAACAACCCTTCATGCTGAAAACTCTCAATAAATTAGGTATTGATGGGCTGTATCTCAAAATAATAAGAGCTATCT<br>ATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCT<br>ATTCAACATAGTCTTGGAAGTTCTGCCCAGGGCAATTAGGCAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGTA<br>GACGACATGATTGTATATCTAGAAAACCCCATTGTCTCAGCACAAAATCTCCTTAAGCTGACAGGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATG<br>TATAAAAATCAGAAGCATTCTTATACACCAATAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAGTAAAATA<br>CCTAGGAATCCAACTTACAAGGGACGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAATGAAATAAAAGAGAATACAAACAAATGGAAGAAC<br>CTTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTATAGATTCAATGCCATCCCCATCAAGCTACCAATGG<br>CTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCTGCATCACCAAGTCAATACTAAGCCAAAAGAACAAAGCCGG<br>AGGCATCACGCTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGA<br>ACAGAGCCCTCAGAAATAACACCGAATATCTACAACCATCTGATCTTTGACAAACCTGAGAAAAACAAGAAATGGGGAAAGGATTCCCTATTTAATAAAT<br>GGTGCTGGGAAAACTGGCTAGCCATAGGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATTAATTCAAGATGGATTAAAGACTTAAA<br>CGTTCGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCAATATCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCTAAAACACCAAAAGCA<br>AGGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAATGAACAGGCAACCTACAA<br>AATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAAAAAAAACAAACAACCCG<br>ATCAAAAAGTGGGCAAATGACATGAACAGACACTTCTGAAAAGAAGACATTTATGCAGGCAAAAGACACATGAAAAAATGCTCATCATCACTGGCCATCA<br>GAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACACCAGTTAGAATTGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGG<br>AGAAATAGGAACACTTTTACACTGTTGGTGGGACGGTAAACTAGTTCAACCCTTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATA<br>CCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCACTAT<br>TCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGACAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCAT<br>AAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCTCAAGGACAAAATACCAAACACCACACA<br>TTCTCACTCATAGATGGGAATTGAACAATGAGAACACATGGACACAGGAAGAGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGCGGGGGGAGGG<br>GGGGAGGGATAGCATTAGGAGATATACCTAATGCTAAATGACGAGTTAATGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCA<br>CATTGTGCACATGTACCCTAAAATTTAAAGTATAATAATAATAATAAAAAGAAAAATAAATAAATAAAATTCAGTATCCCATTCTGATAAAAACCCTTAA<br>AAAACTGGGTATAGAACGACCATACTTGAAAATAATAAAAGCTGTAGATGAGAGACCTACAGCTAATATTATACTAAATGGAAGAAATATCCCTGGAAAT<br>CCTTCCCTCTAAGATCTGGAACATGACAAGGATGCCCGCTGTCATCACTGTTATTCAACATAGTACTGCAAGTCCCAGCTAAAACAATCAGACAAGAGAA<br>AGAAATAAACTGTGTTCAGATTGGAATGGAAGAAGTCAAATTATCTTTGTTTTCAGATGATATATATAATCTTATGTTTGAAAAAAAACCTAAAGACTCT<br>ACAAAAAAACTGTTAGAACTAAAAAATTCATTAAAGTTGTAGGATACAAAACAAACACGCAAAATCAGTAGCATTTGTATATGCCAATGGTGTGCAATGT<br>GAAAAAGAAATAAAAATTATGATTTACAATAGCCACACATAAAATTAAATACCTAGAAATTAACTTAACCAAAGAAGTGAAAAATCTCTATAATGAAAAC<br>TATAAAACACTGTTGAAAGAAATTGAAGAGGACACCAAATAATGGAAAAACATTTCATGTTCATGGATTGGAAGAATAAATATTGTCAAAATGTCCATAC<br>TATCCAAAGCAATCTGCAGATTCAATACAATCCCTATCAAGATACCAATGCCGTTCTTCACAGAAATAGAAAAAACAGTCCTAAAATTTATACGGAGCCA<br>CAGAATGCCTAG</font><font color="green"><u>AAGAGACAAAG</u></font>ctatcctaagccaaaagggcaaaactggaggaatcacatcacctgacttcaaattatagtgcagagccatagtaagc<br>aaaatagcatggtactggtgtaaaagcagacacatacaccaatggaacagaatagagaacccaaaaacaaattcacacactcatagtaaactcacttttg<br>acaaaagtgccgagaacatacactggggaaaagacaatctcttcaataaatggtgcagggaaaactggatatccatatgcagaagaatgaaactagaccc<br>ctatctcttggcatatacaaaaattaaatcaaactggttaaagacttaaatctcagacctcaaactatgaaactgctacaataaaactttggggaaattt<br>tccaggacattg	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr1	179102557	179108615	2000146	0	-	AL162431; RIP_L1_chr1_177_01	ATTTGCGGCCGCTTTACATGGGGAAGACGGTGC	CATGATTTAAATTGTGCCATGCTGGTGCGCTGC	LINE	L1	L1HS	cggtgctcaagtaatacttgcaggtactagcacccaggatttaggagtccagtccagttttagctacacaaaagtcttaagtacacaaattgccaataga<br>gcagaactatataattcatagatttgctcattattaatctcaaggaaatcagctctttaaatatatgtatttaatgaatgtgaaatttttgggaagggga<br>actactatgtattaagccataatatttattttacttaaaaaatttttaaacaaagtaatactagtcattgtgagaatgctattctaaaaaaaaaaaaagt<br>cccctggccaccttctctttccatccctagagaccgaacattttcaaaatttgtagctacttcttctacttagcctccatgtat<font color="green"><u>TAAACTAATATGTGTA<br></u></font><font color="red">ATAAGAATAATCCGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCAT<br>TTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGC<br>ATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGA<br>ATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGC<br>TAGCACAGCAGTCTGAGATCAAACGGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGCAAACAAAGCAGCTGGGA<br>AGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAG<br>TAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCC<br>TCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACAGCAGGGTATTCCAACAGA<br>CCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAA<br>AGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCA<br>CCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAA<br>CCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAA<br>AACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGTGATCAACTGGAAGAAAGGGTATCAGCGATGGAAGATGAAATGAATGAA<br>ATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGA<br>TTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAA<br>CGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAG<br>GAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCA<br>GAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAT<br>AAAATACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAAC<br>CGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAA<br>TGACAGGATCAAATTCACACATAACAATATTAACTTTAAATGTAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCA<br>AGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGA<br>AAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAA<br>AGGGATCAATTCAACAAGAAGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAG<br>AGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAA<br>TTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAGTATACATTTTTTTCAGCACCACACCACACCT<br>ATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAA<br>ACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTCCATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAG<br>GCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGCGTGTAGAGGGAAATTTATAG<br>CACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGC<br>TAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTT<br>GAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCA<br>CCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGA<br>CACATACTCTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACC<br>AAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAGCTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAA<br>AAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATC<br>CTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCCAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATC<br>CCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATG<br>CAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTA<br>TGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTA<br>TTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTG<br>CAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAA<br>TGTGCAAAAATCACAAGCATTCTTACACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAA<br>TACCTAGGAATCCAACTTACAAGGGATGTGAAGGACATCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGA<br>ACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAAT<br>GACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCT<br>GGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACA<br>GAACAGAGCCCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAA<br>ATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTA<br>AACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAG<br>TAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTAC<br>AACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAAC<br>CCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCA<br>TCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAACTCAGGAAACAACAGGTGCTGGAGAGGATG<br>TGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAA<br>ATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGATTATAAATCATGCTGCTCTAAAGACACATGCACACGTATGTTTATTGCGGCAC<br>TATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGC<br>CATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGC<br>ATATTCTCACTCATAGGTGGGAATGGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGG<br>AGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAAT<br>GTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAATTAAAAAAAAAAAA</font><font color="green"><u>TAAACTAATATGTGTA</u></font>tagtgttatatcttgattactcaat<br>tttagatattattcactgactgatgattatgataaatttaatgaggattattatgaggattttaacacattcacatggctcactgttccctctccttcct<br>cgcaatatagtgataatgcaatttttgggtaaatccacattcactttattattaggcttaactgaagaactgcaatttcatgtgcctttcagagtcagtc<br>ttaagctattcaccatgaccaatgtggaaactggtgtcaccaaaaatgtggaagtctttcaggaggaatacacttatctttgaggtcaagagacacagca<br>aagttaagtgtgaatataaagatgacaaaaattgttcctggacctgggatgtggtgctt	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:XPR1:NM:004736:12/15	
0	chr9	97499686	97505715	2000147	0	+	AL354861; RIP_L1_chr9_095_01	ATTTGCGGCCGCAGGCACCTGACCTAATCCTGATCC	CCCACAAAGCTGAAAATCGGTG	LINE	L1	L1HS	tttttactacaagagaagtatgagtacatacgtaggcacatcagtgtgttttgtaccaaataccaatcaatattctttgaggtcttcagtactgtgaaaa<br>aggggatttatattagggctggaaaaggtttgctgggacttaagaaagaattttgtgtcctcccacacattaactcacaaggagctttcagaataccatg<br>tcccaaagggctcatgacacctctgtggactgcactgtatgactggcctctccattcctgagatgagatcattcacacactttctgaccaaatccatgtg<br>ccaggggtacaaaaaggaagacacagtcctgccctcaaggaacttctggtctaacatctgaaacagatacataaatagattgttac<font color="green"><u>AATAACGTTTGGTT<br></u></font><font color="red">GAGGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCATAAGACGGGTGACTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCTCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGATGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCGCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTGGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAACCAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCAAGTGGGTCCCTGACCC<br>CTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTG<br>TCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAG<br>ATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAATGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCT<br>GGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGA<br>AAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTGGAGAACTA<br>CGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGT<br>TTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGA<br>TGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATA<br>CAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAG<br>CCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAAT<br>ATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAG<br>CAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTACAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAA<br>ATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACA<br>CATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGT<br>ATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGG<br>TTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGA<br>GGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACA<br>TTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACC<br>AAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACAT<br>AGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAG<br>AATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCT<br>TTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAG<br>AAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATA<br>ACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTG<br>ATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAAT<br>ACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGA<br>CTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAG<br>ATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAA<br>CTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCA<br>AAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGT<br>TCAATATACGCAAATCAATAAATGTAATCCAGCATATAAGCAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAA<br>AATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAAT<br>ATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAG<br>TTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTA<br>TCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCA<br>TTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTA<br>CAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGT<br>AGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTG<br>GAAAAAACTACTTTAAAGTTCATGTGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGACAAAAGAACAAAGCTGGAGGCATCACACTACCTG<br>ACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAAT<br>AATGCCGCATATCTACAACTATCTGATATTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGG<br>CTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCA<br>TAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAA<br>AATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTC<br>GCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGA<br>AGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAA<br>AACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTT<br>TTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCA<br>TCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGAC<br>TTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTC<br>ATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTG<br>GGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACGGTGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATAC<br>CTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTA<br>GAGTATAATAAAAAAAAATAAAATAAAAAA</font><font color="green"><u>AATAAAGTTTGGTT</u></font>tgtaggatgacagagatatgcaaagacttgtggatcaccggggacgctcagagaat<br>cacctgcgtggcgagtggagacagcttcagcttgggttctcagctcatagggacactgatttatacactgttcttgtgagtcatcattaagtttgggggg<br>agtcaaaagttattcaccgattttcagctttgtggggagttggcatccctaaccactacattgttcaagggtcatttgtgtatatatatgtgtgtgtctg<br>tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgcttttgtcacagaacaagtcatagcatttttttatgttcttagaaacacttcacaaatgtcat<br>ttttgattgctgcgtgaggagcatcctgtg	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr10	111562115	111568206	2000148	0	-	AL354951; RIP_L1_chr10_111_01;AC207482	ATTTGCGGCCGCGCCTCCATTAGCAGAAAACACTGG;NA	ATGTGGTATTTGTCCTCCCAGAAG;NA	LINE	L1	L1HS	atgcctgagttctagatgatgatgaatgataggattctgtggcaacaataatacatgatgccgctggtgttgctgtgttgaatttgccagctttccctgt<br>acagtcctaacaaactcaatgaagacctgcctcactgtgagggaccaaagagcaagtctccctggttgcctccattagcagaaaacactggttctgctga<br>caaggaaattacttagtcctttaaatcataatgtcatcttcatttctgagacaagaaggccagagctgcatcctcccaaccttcatagccacaaggactt<br>atgacccatttgaaggaacatctcaaggacatctctcaggcattgcttctgacagttgcatgtcactaacaggaaattgccagctc<font color="green"><u>AGAACATGGCTTTA<br></u></font><font color="red">AGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCAACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGTGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACACAGCTGGAGATCTGAGAACTGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCACCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAGCAGACCTGCAGCTGAG<br>GGTTCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGTCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAATCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGTGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGAACATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAACAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAAATCAG<br>GATTAAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACAGCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATAATCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGGGGGGAGGGATAGCAT<br>TGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTA<br>CCCTAAAACTTAGAGTATAATAAAAAAAAAAAAGAAAGGAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAACATG<br>GCTTTA</u></font>tttgtcttctgggaggacaaataccacatgttaaatgggaattaatctgaaggggaaaaagtattgttgcccttgcagctgactctcatttatg<br>ttttgttaaaaaaatcaccgtactgagatttaatttacaatacaataaaatgattcattttaaatgtacagtttaatttttttttttttttgagacaaag<br>tctcactgctctgttgcccaggctggagtgcagtggtatgatctgggctcactgcaacctccacctcctgagttcaagcaattctcgtgttttagcctcc<br>catgtagctgagattacaggtgtgtgccactacacctggctaattttttgtatttttagtagagatgggcttcaccatgttgattaggctgg	UCSC;UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr6	102198254	102198255	2000149	0	-	AL356438; RIP_L1_chr6_102_01	ATTTGCGGCCGCAATGTGATGGACCCTAACTGAAGC	TATGTCTGCCTTTGTGCCAGTATC	LINE	L1	L1HS	tatagttgtatatgtcatcagtatataaagtttataaagaaaaaataattttcagacaaataaggaagtgagctcaaattaaagaatgtgatggacccta<br>actgaagcagcaaatgtactgctatagaaagaatctatgttagttgattggctactaaatagactaataaattgacaaataaatgttgttttatttataa<br>agtatattttagtataactcaaatttccttggttttaaaaatatgagtacattactcaaagtgatctatagatttaatgtactctctatcaaaattccaa<br>taaaattttttgcagaaacagaaaaactcagctaaaacttcatatagaatctcaagaaatcctgactagccaaaacaatctt<font color="green"><u>AAAAAAGAACAAAGTTGG<br></u></font><font color="red">GGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCAACACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGACTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGAGATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCAACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCTTATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGAGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAATAATAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGAACAAAGTTGG</u></font>agatctcatagttcctgatttcaaac<br>ttattacaaagctagttaaaacagtatgatactggcacaaaggcagacatataaaccaatggaataaaatagagagctcagaaataaactctcacatatg<br>tggtaaaataattttcattttcaacaataaactctaacatatgtggtcaataaatgacaaaagaatagtcttttcaataaacagagatagggaaactgga<br>tatccacatacaaaagaataaagttggactcttactcttcaagatagaaaaaaaattaattcaaaaaacataaaaaacctaaatgtaagatctaaaacta<br>tacaacccttagaaaaaaacataggggaaaatcttcatgacattagatttggcaat	Other	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:GRIK2:NM:175768:3/17	
0	chr1	185833428	185839516	2000150	0	+	AL357559; RIP_L1_chr1_184_01	ATTTGCGGCCGCAGCTACAAACCTGAGAGCCCTCAC	TTATAGGGTAGGACCCTTTTTGGG	LINE	L1	L1HS	gggtacagccctccattctggctgctttcacaggctggtgttgagtgtttgcagtttttggaaacttacgagatcaaaagaaagctacaaacctgagagc<br>cctcaccctggaagacattcatacaatgtaatggactggactaattattaatgatggtgtatattcttttcatagaaaggatccatgttcaaaaactaga<br>ggttggcctgtggtgttatttgatacacacacacacacaaatatatatttatatgtatatacaacgtaatatatgtgtatatataatatataacatataa<br>aacacatatgccaggaactggcttataactcccagagcccttatcatagtcttttgttacaacattgggtgctttaggcctt<font color="green"><u>AGAAAACAGAATGCTCAG<br></u></font><font color="red">GAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCG<br>GGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCACGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAA<br>GCGCAAGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGAC<br>CGGCTTAAAAAACGGCGCACCAGGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCACTGATTGCTAGCACAGCAGTCTGAGA<br>TCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAG<br>CCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAA<br>GTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCATGCAGCTGGAGATCTGAGAACAGGCAGACTGCCTCCTCAATTGGGTCCCTGACC<br>CCTGACCCCTGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCT<br>GTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAA<br>GATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCACCTCTCCTCCTCCAAAGGAAAGCAGTTCCTCACCAGCAACGGAACAAAGC<br>TGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTG<br>AAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACT<br>ACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAG<br>TTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTG<br>ATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTACCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAAT<br>ACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCA<br>GCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCAGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAA<br>TATTCAACATTCTTAAAAAAAAGAATTTTCAACCCATAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAA<br>GCAAATGCTGAGAGATTTTGTCAACACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACTGGTACCAGCCGCTGCAA<br>AATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCAC<br>ACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGGTGGATAAAGAGTCAAGACCCATCAGTGTGCTG<br>TATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGG<br>GTTGCAATTCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAG<br>AGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACAC<br>ATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCAC<br>CAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACA<br>TAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAA<br>GAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTC<br>TTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCCACAAGA<br>AAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAAT<br>AACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATT<br>GATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACTGATCCCACAGAAA<br>TACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAG<br>ACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCA<br>CATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTA<br>ACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCTGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGC<br>AAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGG<br>TTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACA<br>AAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAA<br>TATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAA<br>GTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTT<br>ATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGC<br>ATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTT<br>ACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTCCATGCTCATGGG<br>TAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATT<br>GGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCT<br>GACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAA<br>TAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTG<br>GCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACC<br>ATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCA<br>AAATTGACAAATGGGATCTAACTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTT<br>CGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCG<br>AAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCCTCACTGGCCATCAGAGAAATGCAAATCA<br>AAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACT<br>TTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCC<br>ATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGA<br>CTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTT<br>CATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCATAGGT<br>GGGAATTGAACAATGAGATCACAGGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCAGTGGGAGA<br>TATACCTAATGATTGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAA<br>ACTTAAAGTATAATAAAAAAAAAAAAAATTTAAAAAAAAATAAAAATAAAAAATAAAAAAAAATAAAATAGAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAACAGAA<br>TGCTCAG</u></font>atcttctcctgccctccttttacccactccaatgcaggactttaatcttcctccacctttctggttgtgagtcatgagacctttcccaaaaag<br>ggtcctaccctataacccgggggaaggaatgctgacctcataaagcttctataaaaacccaagaggtcaggcttcagggagcttcatgcccctttcccca<br>tacctcaccctatgcatcttttcatatgtatcccttgtaatatcccttataataaaccaggaaatgtgaaaaaaggaaatcaactattagcaacaacagc<br>aacacaagcaacaccattcaatggtttaaaggctaggtgggctagggttatatatgcaatacttatatttgggcgtgatgttgatcagc	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr1	113841366	113847400	2000151	0	+	AL389921; RIP_L1_chr1_113_01	ATTTGCGGCCGCCTGTAAGTCCCAGCTACTTGGAGG	CCTCTGCTTGCTCATTTCCAGTG	LINE	L1	L1HS	catttttttaaagtaattgttatctaggccacattagccttcaagctacattgtctattgactgaggctccttagatctcttataaaatgcattatattg<br>cctgacttgcatattatattatctaggtaaagcaatgtaattaaagcttaactgaggtcatgggtggtggctcacacctgtagtcccagcactttgggag<br>gcaaaggcaggcagatcacttgaggtcaggtgttcaagaccaacctgggcaacgtggggagagcccgtttctacaaaaatacaaaaattagctgggcgtg<br>atggcgcatgcctgtaagtcccagctacttggaggctgaggtgcgtggatcacttgatcccaggaggtggaggttgcagtgagct<font color="green"><u>AAGATCACACCACTG<br></u></font><font color="red">GAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGG<br>AGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGA<br>GTTCCCTTTCCGAGTCAAAGAAAGGGGTGATGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGC<br>GCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGG<br>CAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAG<br>GAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGAGCAGGGCACAGACAAACAAAAAGGCAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACA<br>GCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAG<br>CCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAA<br>ACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAG<br>AACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATT<br>TTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAA<br>TTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGA<br>AGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAA<br>TAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAAC<br>CAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAA<br>AGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTC<br>GGGTTACCCTCAAAGGGAAGCCTATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAA<br>AGAAAAGAATTTTCAACCCAGAATTTCATTTCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAGAAAATACTTTACAGACAAGCAAATGCTGAGAGAT<br>TTTGTCACCACCAGGCCTACCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGT<br>AAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAAC<br>TTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCAT<br>CTCATGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCT<br>CTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCT<br>AAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGAC<br>TTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAG<br>ACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATCGACCACATAGTTGGAAGTAAAGC<br>TCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGC<br>CGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGA<br>ACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATC<br>CAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCA<br>GAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAA<br>GACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAG<br>AGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAAACAGGAAGAA<br>GTTGAATCTCTGAATGGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCG<br>AATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGC<br>CAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAA<br>ATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAAT<br>CAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTT<br>CATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGG<br>CAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAA<br>TCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCAT<br>TGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAAC<br>AACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGG<br>ACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATAT<br>CGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTA<br>AAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTTACTTCAAACTATACT<br>ACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCACATATCTA<br>CAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGA<br>AAGCTGAAACTGGATCTCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAG<br>AAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGA<br>TCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCT<br>GACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGAC<br>ACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATA<br>TCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGG<br>GACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTA<br>TATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACTCGTATGTTTATTGCGGCACTATTCACAATAGCAAAAACTTGGAACCAACCCAA<br>ATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATATTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGG<br>ACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGA<br>GATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGGTAGCATTGGGAGATATACCTAATGCTAGA<br>TGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATTA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATCACACCACTG</u></font>cactccagcctgggtgtcaaagcgagaccctgtctcaggaaaaaaaaaaa<br>aaaaaaaaaaaaaggcttaattgattgaaccagattcgagaaaacagtgctaaattataattttctcaatactgtaaatatttttcaatcttcagcttca<br>ttaacttctataatttgaaattatcccaattattacctgacatgtactaaaattccctaaaatggatcttgagtaacattttcacagtacgataattttt<br>ctctctgtatatatttatatagtcacatatatgcacatacattatacaagcattacttttctataactgtaaggtcagaatttgaagttgtgttttcttt<br>atctttttatttccaatacttggcatcaagttgat	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:MAGI3:NM:152900:1/21	
0	chr11	94809030	94815087	2000152	0	+	AP000652; RIP_L1_chr11_094_01	ATTTGCGGCCGCAGCAAACTGCTGCCAGTGTGTC	GGGATTATCTGGTTGCAGGAGTAG	LINE	L1	L1HS	gcacatcctctgtctcaaacttcccaacagttttaggaggatgtttttacaggatcatgttaaaggtgccggaacagaggctacaagatattaagtaact<br>tgtctgcagttattcaacatttggcattggggttgagatttgcacccaggcttggctgacttcacacttgggtttttaacttctccattaaaagaacatg<br>gataaaaatgtaaggaaagaaaaaagaagacaagtaaaagaagaaaggaaacagtgaggggaagcttcaggctaaggctaaacagattgctaagccatgt<br>agtagaacacaggtcagcaaactgctgccagtgtgtcacatccatcctgatgacctgtttttggattgcaaaatggtttttacatttttaaag<font color="green"><u>AATTGTA<br></u></font><font color="red">GGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACAGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAAA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACACCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCAGATCTCTCAGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCTCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCACTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTTGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATACTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGCTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAACTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAGTGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAAAAAAAAA</font><font color="green"><u>AATTATA</u></font>aataaaacaaagaagaatatgtgagaggagctga<br>atgtgccccataaagcctaaaatatttaatctcttgtccttttttcctgcaccaggccagatatgactcctgggcctcactaccctgaggttaactgtag<br>gtgaaaaggaaggggaaggagatcagcctttggtaaaaatttcctactgctaccagcgtttgacatagattatctaagttaattcttaaaataaccctga<br>gacatggtttgcacttgtcttccctattttagccagagggaaaacctgctcaatgattaattcgcttgtctaaattcccagctaggaattggtagagatc<br>agaatgggtctcctgggatcagacttagacttagagctcagacttaagtctcttgggct	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr7	110670807	110676838	2000153	0	-	AC004142; RIP_L1_chr7_110_01	ATTTGCGGCCGCCGGGAATGTTGAAAGAGGTCATC	GGCATGTTGACAGGAATGTACACAG	LINE	L1	L1HS	ctgtttgaatatcctttatttctttctcttgcctgattgccctggccagaacttccaatactgtgttgaacgggaatgttgaaagaggtcatccttgtct<br>tgttttcaaaggaaatgcttctaacttttgcccattcagtatcatattggctgtggatttatcatatatggctctggttattttgaggtatgctctttca<br>atacctagtttattgagagtttttaacatgaagggatgttgaattttaccaaaggccttttctgggtctgttgagataatcatgtgttttttgcctttag<br>ttctgtttatgtgatgaattacaaatatgactttctcttctaaatggatagttttctttccttataagcagtttgtaaatatttagt<font color="green"><u>TAAAGCAACAAGA<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGATGGATGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCACCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACATCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACACCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAATCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCGGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTATCTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACAAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGCACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAACGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCTTTCCTTACACCTTACACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAA</font><font color="green"><u>TAAAGCAACAAGA</u></font>aatatagagttgaacactttacttctataagcatataacttttaaaattatatat<br>gtaaaacatgaaggactggaaaacctattgtggaaattactagtccatgcaagaatataaaatttcaacagcttgggaatttactagtactgtgtacatt<br>cctgtcaacatgcctcagttatgtcatagtttttaattctacaagagttttagatagagaattagtatttattgagaactcttttagcataataaatatt<br>ttataattcaatatataataaatacttcacattcagaatatgtatcttgggaatgattgaatggctggtgagcaaggcaacgtcatgccatacatttaaa<br>aattcctgttgtttcttctcaaaacaactact	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:IMMP2L:NM:032549:3/6	
0	chr17	65869026	65869027	2000154	0	+	AC011990; L1HS74; RIP_L1_chr17_065_02	ATTTGCGGCCGCTGCCCACATTAGAACAGGATGC	CTTTAAGAAAAGTGAGGAGCGGTG	LINE	L1	NA	ggaaagatgattgggttaggaaagttgagcagttatttagaaatgagcacacgagctggggagacctctccagagaaggcagtggagaatcaaagaatag<br>agggttgtacaggagatgctttttgggaatggctgtttcaggtatcaattaaagtggaaaggtagggttgtttttgtaaaaaagatccaagacaatggag<br>gatttgcccacattagaacaggatgcaaactacaggacggcagaatgttacagaaacgaaaaatgtgtttcagagtgattggagttagcattctggacgt<br>atttcttacagagttgactagcactattcattttccaccctccaacagttgctgaatgattttgttttaagaaaaaataaacaaaaagtacttagcctca<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>aggaaaataacttagggattttctgcatcttgaaatgcatgcttgtttggaacaaacagccgataaaccaattctcttaa<br>ttatacacaaactgcctcacaattatgtactaaccgaatcctgagtggacttggtagacacttgctgcttatgaaagaaacactacgcagaggcaccgct<br>cctcacttttcttaaagaaaaaaaatgcatgactttaaaaaaagagtttgaaaattctcagtgatcttgttccctcatttatttttccacaagctgtgtc<br>taaattcaggcaaagttatcaacttaccatttaatgatatggtcacttaaacaaagcataaccttaacagaccttcaattcaagcttgcattacacatag<br>tttccaaaagctgttttttt	Other	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr10	13299275	13300746	2000155	0	+	L1HS493; 1; RIP_L1_chr10_013_01	GACTACCTTTCTGCGTATTCCTTTC	GTCTAACAGGTACACGAGACTCCAT	LINE	L1	L1Hs	taggtaaaccaactggtattaaacaaagcatggcatccaaccaggaggacagttttgtgtgaatacagcgcaaccttcctggtgtcgctggctgaacagc<br>cttcagggctgacgcaggatctgagctagcagcaggctgagcttgcactcctgcccaaaaacatatcactggtcaaaaataaattctaaagttttttaaa<br>aaaaataaaaatggtcagcacagtgttcctggcggaaaaataaataaataataaatagaaaaaagtttatatacttagatgtatacagatcactcaaagg<br>aaactcaagacaatggtgataatggtttctttcaggagacccaggagggactacctttctgcgtattcctttctgttcttt<font color="green"><u>AAAAATGTTAAACCATGGG<br></u></font><font color="red">GTGCTCGCTTCGGCAGCACATATACTAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCAAATTCGTGAAGCGTTCCA<br>TATTTTTATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCACAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAAAGTATAATAATAATAATAAAAAAAGAAAAAAAAAAAAAAAAGAAAAGATAAAAAAAAAAAA</font><font color="green"><u>AAAAATGTTAAACCATGGG</u></font>tgtgtatta<br>cctgttagactattttttttttgagatggagtctcgtgtacctgttagactatttttaattttaaaaagccaagataatgtggaaagtgaataaaacatt<br>tttaaacatttataattttaaacattataagatcacagagtatatcagagttctcaattgtagactagaacatttatatttaaccaatttgttttcagag<br>aaatcccttcaaggctagagacaacttttttttagagacagggtcttactctcttgcccagtctggagtgcagtggtgtcacatagttcactataccctc<br>aacctcctgggctcaagcaatcctcccacctcagtctcccgagtagctggaactacaggcatgtgtcaccat	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Buzdin A, Ustyugova S, Gogvadze E, Lebedev Y, Hunsmann G, Sverdlov E. Genome-wide targeted search for human specific and polymorphic L1 integrations. Hum Genet. 2003 May;112(5-6):527-33. Epub 2003 Feb 25.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12601470">PMID:12601470</a>.</LI></UL>	E:Library screening:TGDA; E:Insertion-specific detection:PCR	NA	61	1603	111	NA	intergenic	
0	chr4	88489228	88493322	2000156	0	-	22; RIP_L1_chr4_088_01	NA	NA	LINE	L1	L1Hs	ggaagggcctaaagattggtcctgacatatgaacctctttgaggctaagctggtactaaagtagaccccaaagatgaagttggttttaatatagaaactt<br>attacttctaattagaagagagaacatgttcctcgttaaatacctgtttacatttcagacaccaaataaaatgtcattttcttaaacctcacaacaatac<br>ttttggggagatgttattagtccctcttcagtagatgagagagatctgaggtttagagaaattaaattacaagttatataccctttggcccagtaatccc<br>cctttatgaatctacctgagggagataattatccaaaagtgaaaatatgtgtgcccgaggatgcttattgctgatttgctgtt<font color="green"><u>AAAAATCCAGAATACTA<br></u></font><font color="red">GAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGGAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAATTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACA</font><font color="green"><u>AAAAA<br>TCCAGAATACTA</u></font>aaaacaaccctaaaatcatcactaggagatgctattgctcccaataatcaatacaatttactgtttactataaaggtataatacagca<br>taatctgggtttattggaattaaatgtaaatcaggtgttccaattatttttttaagctcagttatttttgttaaacttgaatttcaacaaatagttttta<br>aaattttttaaaaatatacatatatatattttttcttttagagacaaggtcttgctttgttccccaggctgatcttgcctcagtgtcccaagtagctggg<br>ctataggcgtgagctgccacacccagcttagcacacttttaatctttgccagtatgataggaaaaaaacagtacttccatgttatattaatatga	UCSC	<UL><LI>Buzdin A, Ustyugova S, Gogvadze E, Lebedev Y, Hunsmann G, Sverdlov E. Genome-wide targeted search for human specific and polymorphic L1 integrations. Hum Genet. 2003 May;112(5-6):527-33. Epub 2003 Feb 25.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12601470">PMID:12601470</a>.</LI></UL>	E:Library screening:TGDA	NA	NA	NA	NA	NA	intron:HSD17B11:NM:016245:5/7	
0	chr9	46019227	46019794	2000157	0	-	25; RIP_L1_chr9_044_01	NA	NA	LINE	L1	L1PA2	gtatctgcctctgcttctatcactggtgatctggggaccatatgcttttcggataagagatgagcctcttagaggtcaatttgtcaattcctctgtctcc<br>tcttggggtggcccctttgtaaattctaatagctataggaaatgaaaagggtgagagtctctgaaattctgggatctcaagagaagctaattctaagtga<br>aaacctcccggactgaagcagtgcctgtggtgaggggatgtccaaggttgagaagcagctctcagctgagtatccctcccctctcttgctctggcagaag<br>tgtcagccctccccttatctcttgtatcatttcctagggcctgcatctcaacctctggctacacattagcaacctggggagtttt<font color="green"><u>AAAAATCCAGATGCC<br></u></font><font color="red">ATGGTGTATATGTGCTACATTTTCTTAATCCAGTCTATCATTATTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAATGCCGCAATAAACA<br>TTCGTGTGCATGTGTCTTTATAGCAGCATGATTTATAGTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATC<br>CCTCATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCGTGTCCTTTGTAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAA<br>CTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAACTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCT<br>GGGGACTGTGGTGGGGTGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACAAGTTAGTGGGTGCAGCGCACCAGCATGGCAC<br>ATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAAAAAA</font><font color="green"><u>AAAAATCCAGATGCC</u></font>caggccctactacaggc<br>caaccaaattggaatctctggaggtgggacccaggcatcagtattttaaaaaacttgtggctgggcatggtggctcacacctgtaatcccagcacgttgg<br>gaggccgaggcgggcggattacctgaggtgaggagtttgacacaagcctggcaaacatggtgaaaccccgtctctattaaaaatacaaaaattagctggg<br>catggtggcaagcacctgtaatcccagctactcgggaggctgaggcagggataattgcttgaacccaggaggcagaggttgtagtgagccgagatgtgcc<br>accgcactctatcctgggtgacaagagcaagacaccatctcaaaaacaaaaatgagcaaacaaaaaaa	UCSC	<UL><LI>Buzdin A, Ustyugova S, Gogvadze E, Lebedev Y, Hunsmann G, Sverdlov E. Genome-wide targeted search for human specific and polymorphic L1 integrations. Hum Genet. 2003 May;112(5-6):527-33. Epub 2003 Feb 25.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12601470">PMID:12601470</a>.</LI></UL>	E:Library screening:TGDA	NA	NA	NA	NA	NA	intergenic	
0	chr3	106956551	106956812	2000158	0	-	L1HS6; RIP_L1_chr3_106_01	TTTATTTCCCTGCATCTGATTA	CCTGTTATTAGATAATGAGTTCTAGTC	LINE	L1	L1HS	tcattcacaccagtagtatacagaagttcctgtttgcaaacaccctggcttctgttgatgttcaccctttgttgtatgaaatgtttttcattttttccta<br>tcagttgaaactaaaaccctgtagccttttatgaactagtggtttcatgaaaatattttacctttttttttttaaaagaaatcattctcctcacactttc<br>tattttccattcttcttaccttttcttaaaattgcaggattttcaaattagaatatctaatacacttctccacatttacacaggagaaaacaagcctgga<br>agattaagtgatttgtcaactactgaccagctgacacctttccagatttatttccctgcatctgattaatcccattgtcttt<font color="green"><u>GAAAAGATACTGTTTTTC<br></u></font><font color="red">CACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCAGGGGA<br>GGGGGGAGAGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTG<br>CACAATGTGCACATACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAAGATACTGTTTTTC</u></font>aagactttaaagaggattac<br>tattgttttttggtagacagactagaactcattatctaataacaggattataacatagtcttatttatcatgttcttatctctcatgatattatatgaac<br>agaactatcactttaacaaaaagtcattaatagatttctgtgtaatagataggtggtagtaagccatcaataaatggcagttcttactcttatttgaaat<br>aaaaagatcctgaaattatattattattacaggtgcatggctatccattggtcatgtattctattctttgtagattgacagttacttatacttgttcact<br>gtattttaaaagcgattcagcctgcaacttaagtggtttataattgtaagggtcaatagaat	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	54	402	122	NA	intron:CBLB:NM:170662:4/19	
0	chr7	69466265	69466402	2000159	0	+	L1HS7; RIP_L1_chr7_069_01	CCTTAGACATATTCTTGGAAATAG	CCAGAATATTTGGGTATTTCATCTG	LINE	L1	L1HS	aagataaattatctcaataactctggaatgacatcaaccccacttagaattaaaggaacagaagtctttgtgataaatattctctcagtctttccctctc<br>tgtgtgtgtataatatttttgttaatacacagatggtaatctaatgagatgcatttattcctcctgatatttgtaagtacagtgtatcttttcattgtat<br>taactgttgttctacatctgtttggatccattctgtggattcaaaatcatgtagatcaccagtctctaatggttggacatttaggatttatctggtttct<br>catctgagtgtttattagatgactattggatttccttagacatattcttggaaatagaattgctatatcaaaaattatgg<font color="green"><u>AAAATCTGAAGCTATTGATA<br></u></font><font color="red">TACCTAATGCTAGATGACACATTGGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAAC<br>TTAGAGTATAATATAAAAAAAAGAAAAAAAAAAAAAA</font><font color="green"><u>AAAATCTGAAGCTATTGATA</u></font>gtcttatttttaattgctctaaaataagtattaatttcttaga<br>aagaattatttatttaaattaagatatttatgcagatgaaatacccaaatattctggtttgctgtttatttttatcccataactcaacgggtatttatat<br>aattaattatacttttcaagtttttcacccctatgttctacatatattgctacccatgtactccatactctattcttttatgcttctttgaattctgtaa<br>tttaaaaaatcaaagcaaactaaaaacaaaacaattcagctcaaataacattttttcctaaaaacctaagtctcccagcttctttgaactcctccttcta<br>tggactcttacagtcctcctctagcctatttatctca	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	58	326	169	NA	intron:AUTS2:NM:001127231:4/18	
0	chr4	15452268	15458340	2000160	0	+	L1HS18; RIP_L1_chr4_015_01	TTGAACAGCTTAGACTCGTCAGATA	GCAGTTAGACAGGAAAACAGAAAGA	LINE	L1	L1HS	ttcaaaactgagacccctcactcatttttaagcagttgtgaccaatggtgtaggtaggtactcattggtagaagcatctttggagatttttccacgtata<br>atagcttggaacaagattgatgcagagaggaaaagctgttcaaaggaggtagaagctgagatgctagaatattgttcctgtttccatgtcactaccttct<br>ctcactaaccacatcagaaaagcagaaggatagattctggagactctactgatggcttttgtttcccaaatgacctgaattccccatgagtcaccttgct<br>tctatctggaaacagccagaaaaggccatgagcattctacagcagttagacaggaaaacagaaagaatgaatgaaggagcaactgt<font color="green"><u>AAAAGCAATCTTGC<br></u></font><font color="red">GGCGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCACACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCGCGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGATTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCTTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACATGGCAGAGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACATGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCAGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAAAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGAGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGATGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACGCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACTGCTCATGGGT<br>AGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTG<br>GAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTG<br>ACTTCAAACTATACTACAAGGCTCCAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAAT<br>AATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGG<br>CTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCA<br>TAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAA<br>AATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTC<br>GCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGA<br>AGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAA<br>AACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTT<br>TTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCA<br>TCCCATTACTGGGTATATAACCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGAC<br>TTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTC<br>ATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTG<br>GGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGAT<br>ATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAA<br>CTTAGAGTATAATAAAAAAAATAAAAAATAAAAAACAACTCTCAGAAGCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGCAATCTTGC</u></font>agatatctgacga<br>gtctaagctgttcaaagatatgttgcatggagaaaatagaatagtagaaacctagacaaagactgggaaataaagatggtcttatccccaatactctttt<br>accttttttgtcttatgaaacattaacctttttctcataaatgaccagaagacctttatattataattcgtcaactcccctcatttgtgtctgctttagg<br>ctccaagtgagctcactcattctccatctggaaagaaaatatgggcatggcttccatttggacttgtacagacagtggcccataatgggaaccaggtgac<br>acatcacaagggcaggttctgacacctcttccttccagaagcccaggggtgctggcagctgcttctgaggatc	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	6174	87	NA	intron:CD38:NM:001775:7/8	
0	chr4	20769968	20775752	2000161	0	+	L1HS39; RIP_L1_chr4_016_01	AGAACCAATCTTGCCCACAC	TGAGGAGTTTCTGAGTAACCTGGTA	LINE	L1	L1HS	tgggcttattcctgaaagggccacaagtgtgctttggtgttggcctcagacgacttctgcaactgccaaactactaatcacatgtctttccaatcaatga<br>ccacattgtcattaaaagcaagactaccaggcatcactgctattgcatttactttgaaaatacaaggctggctgtggaatgttaaggcaggtagaccatt<br>gggggatgggaagcatttccttagatggggaactgaaggaagggaaggtgttctgaggagaggggaaagcagaaataaaaactagaaaaaggaaaggtac<br>aagatgtaatgaggagtttctgagtaacctggtatattagtttgataggactcccatagcaaagtaccgcaaagtgggtggctt<font color="green"><u>AGAAATTTATTGTCTT<br></u></font><font color="red">GGCCATTTTCCTCCGGAAGTGCGGATCCCAGCGGCGGTCCTGTAGCTGAGCAGGCCTGGGGCTTGGTTCTATGTCCCTGTGGCTATGTTTCCAGTGTCCT<br>CTGGGTGTTTCCAAGAGCGGCAAGAAACGAATAAATCTCTGTTTTAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGT<br>GAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCA<br>CACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACG<br>CACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAATGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGG<br>GTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCA<br>GGCTTGCTTAGGTAAACAAAGCAGCCCGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGG<br>GCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAACTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGC<br>TGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCTGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTG<br>ACACCTCACACGGCAGGATATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCC<br>ATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAATTGGAAACTCTAAAACGCAGAGCGCC<br>TCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAA<br>ATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAAATTAGAAGAATGTATAACTAGAATAACCAATACAGA<br>GAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGG<br>GTATCAGCAATGGAAGATGAAATGAATGAAATGAAGTGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGG<br>ACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGA<br>GAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATATTCCTCGAGAAGAGCAACTCCAAGACACATA<br>ATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGACGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAG<br>CGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGC<br>CAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTG<br>AAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACT<br>AATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAG<br>ACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGCGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAA<br>GGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAA<br>GAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATT<br>CATAAAGCAAGTTCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACG<br>AGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACATAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAAT<br>ATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAAC<br>AAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTG<br>AATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCAT<br>TCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCACAATTGACACCCTAACATCACAATTAAAAGAACT<br>AGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAA<br>AAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAG<br>ACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGA<br>AAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTGAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAA<br>ATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCAT<br>TCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTAATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACAC<br>AACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAG<br>CTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAG<br>ACAAAAACCACATGATTATCTCCATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGG<br>GATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCAGCACA<br>AGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAG<br>GAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAA<br>CTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTC<br>CCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGG<br>AAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAG<br>ATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCC<br>AAGTCAATCCTAAGCCAAAAGAACAAACCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGT<br>ACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAA<br>GCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACA<br>AAAATCAATTCAAGGTGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGG<br>GCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGA<br>AACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTC<br>AAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACAGTTCTCAAAAGAAGACATTTATGCAGCCAAAAAAC<br>ACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAA<br>GTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTG<br>TGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAG<br>ACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTG<br>GCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAA<br>CTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCT<br>GGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCAC<br>ATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATTTATTGTCTT</u></font>atagt<br>tgtggaggctagaagttcaagatcaaggtgtgggcaagattggttctttctgagagctatgaagaagaatctcgttgatgcctccccctagcttcttgtg<br>gtttgctggcaattttgggcattcattggcttgcagatgcatcacgtaatttctgccttcatcttcacatggcattctcgctgtctgcatgtctgactcc<br>aaatttcccttttctatgaggacaccagtaatactggattagaggttcactcctctggtatgacctcatcttaattatgtctgcaatgaccctatttcca<br>aataagatcacattctgaggtattggggcttaggaattcagcatatgtattttggggagcacagttcagcatgtgacat	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	6337	155	NA	intron:KCNIP4:NM:001035004:1/8	
0	chr3	4055896	4056553	2000162	0	-	L1HS73; L1HS178; RIP_L1_chr3_004_01	ATAAGGAGCCTAGGGAAGAACTTTT	CAAGCATGCCTGAAACATCTAT	LINE	L1	L1HS	acataatttgacctgttgttttatttattttcccaagctttattgaagtataattgacaaattaaaattgtatatatttaaggagtacaaaatgatgttt<br>tgatatatttccagattgtgaaatgtgaccaaaattaagctaatcaacatatctatcaccttacatagttatctctcttttgtgtgtgtggtaaaaatac<br>ttaagatctactcttttagcaaattttcaagtatacaaaacattttttttcttgagacaggtctctgttgcccatgttggagtgctatggtgtgatcatg<br>gctcattgcagccttaactcctgggctcaagtgatcctcctatctcaggctcccaagtagctgaaattataggtatatgccaccgtgtccagtg<font color="green"><u>AATTTG<br></u></font><font color="red">AAAATTTTTTTTGTAGAAACTAGGTCTCACTGTATTGCCCAGGCTGGTCTCAAACTCCTGGCATCAAGTGATCCTCCTGCCTCAGCCTCCAAAAGTGCTG<br>AGATTATGGGTATGAGTCACCATACCTGACCATACAAAACATTATAATTAACTATAGTCATTAGGACCTATTGTTTTTAGAATATTGAGCTTTCTTCACC<br>TTTTAATCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGC<br>AGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACAC<br>CGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGG<br>GGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCAC<br>AATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATTTG</u></font>catagatgtttcaggcatgcttgaaggaagttatag<br>atccatttttaggatatggattatgatatatattaaatgtattttctgtatttcaattctctgtaatttttttctacttgaactataaaaaattaagggg<br>ggagtgctttaatgtttgccattgctgttgcatttaggtagttctcttttcaaacaaaatgtaaatattatgatatgctattttgtttataaatggttaa<br>gttgctgtcttaattgtgagttagtaaattaatctgtttatgctctttattgcttttttcttgaattaagcattgtctgatactaatatcgcaacccctg<br>aactcttttgatttgcattttcctggtaaaacttagctatcctgagcatacccagtgg	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	55	1126	462	NA	intergenic	
0	chr20	12729657	12735692	2000163	0	-	L1HS110; RIP_L1_chr20_012_01	GGATTCTGACCTTATTCTAACAGCA	AGTTGACTGTTGGTGTTGATTGTGT	LINE	L1	L1HS	tagctgggattacaggcgcccgccaccacgcccagttaatttttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtcttgatctc<br>ctgacctcgtgatccgcaaaatgggatcaatctttttctaaaattatcttttagttataaaaggaagacttgcaaggagcgctgctgctatgattccatg<br>ttagaccttcatgcagaactctgtaacctagctctttatgggtaagaattgtcccttgttcattattttctaattattaaggattacatcatttccagtt<br>gactgttggtgttgattgtgttttattacattttaatcctaggaatattaagaagccacatgtggttggtgtaggttgctgtctt<font color="green"><u>TAAATCCAGTGACCC<br></u></font><font color="red">GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGATGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGCGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGAAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTACAGAC<br>AAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATGTTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTGTTCAGGAAACCCATCTCACGTCCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTTCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAACGTCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACTAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCGATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAGCCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAGTCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCATAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAACGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAACAATGGCAACAAAAGC<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACGTACAACATGGGAGAAAATT<br>TTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>TGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>ACATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAAGAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAATAAATAAATAAAA</font><font color="green"><u>TAAATCCAGTGACCC</u></font>tagtggttttattttgtcttgttttttaaacacaaatctgactggacgg<br>ctcgatggttggaaactcatcagcagcttcccattgctgttagaataaggtcagaatcctcaacctgccagaagcatccctgccctttgtccccacattc<br>ctaccctttacaattagcctggcttataagggctgcatgtgaagaaatacacatattttcttttccactgctaaaattctcacttgcattcttggtgctg<br>tgagcagaggtggtgtctgctgtgttcactccttaaatacatagtctagcactgtgcctggtacatagcagatgctcattacaaatattttaaaataatt<br>cagtaaccgagtaaaacagtctaccatgttaataat	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	56	6263	212	NA	intergenic	
0	chrX	124905402	124905627	2000164	0	+	L1HS125; RIP_L1_chrX_124_01	CCTCACGTTTCTCCACATTGTA	TTCTGGCCTTCATAGTGTTTTA	LINE	L1	L1HS	aactattaactttttaatgtactccttgactagagtgtcatggtcctgatatgaaaaaaagaaccaaatatgcctaaatcaatgaagccttattatatta<br>tgcatcatctctcctcagtgtatgtgctgtatgtaaatatctcatatactgatggcaatgcttaactgaatatctaatattttaaagtgatattgttttg<br>ggtcttataataaaagtgcaatttaatatactagtattattagacaagtaggttaagaagatgccatagacataatgaatcggggtttcaaccacatttt<br>gaaaagaaaccttacaaggtatcttggcataaaattctggccttcatagtgttttaaaaataatagttgttcaataacgttttattgcat<font color="green"><u>AGAAATTGAA<br></u></font><font color="red">CGTTATTGAACAACTATTATTTTTAAAACACTATGAAGGCCAGAATTTTATGCCAAGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTA<br>ATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAG<br>TATAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATTGAA</u></font>tgaaattacaatgtggagaaacgtgaggttagagagatgtgagttagaaaacttcaaaacatac<br>atgaagagtattggttaaatagatgaaatttatgtctgaagagtctttatggggagctatatagctcatttattgggcttaatgacttacatttttatca<br>acaaatttagtttagacaaagaacataaataagtttatcaggtttgtggaagacgtagcgtggcaaaatacctaatatagaatcacgatttaatgagaac<br>aatctgagaggctgtaatgattagtaaaagctacagtgatggactctactaagtcataaaaaattaactgcaaatgtgtaagggtaaaacttcctaagat<br>ctgctcctgtaaaacagatattttca	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	332	96	NA	intergenic	
0	chr6	66844286	66845022	2000165	0	-	L1HS157; AL049842; RIP_L1_chr6_066_01	ATTCAAGTTCCAGTAAGCTGTGTTT	GAACTTTGGAAAATTCACAACTACC	LINE	L1	L1HS	acaataatagtcggcgacctcaaaataccatgcagcaatcgacagatcagccaagcaggaaatcagtgagcaaacattgcacttaaattacactttatac<br>caaatggaccaaacagaaatacagagaacattctatccaacagctgcaaaatacacattcttttcaagtgcacaggagaccttacccaagatagatcacg<br>ttaggctgaaaaacatgtctcaacaaacataagagaattaaaatcatatagaatatattttctgactacaatggcacaaaactagatatcaataaaaaga<br>ggaactttggaaaattcacaactacctgaaaattaaacaatatgcttttgaacaaccattatgtcaatcaagaaattaaaggggaaat<font color="green"><u>TAAAAATATGTT<br></u></font><font color="red">GAAACAACAGGTGCTGGAGAGGATGCGGAAAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCG<br>ATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACA<br>TGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACA<br>TATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATC<br>GCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGA<br>CTGTGGTGGGGTTGGGGGAGGGGGGAGGGATAGTATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTA<br>TACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAATAAAATAAAATAAAAAAAAATAAATGAAAAAAAAA<br>AAAATAAAATGAAAGTAAAATGTTATTTAAAAAAAAA</font><font color="green"><u>TAAAAATATGTT</u></font>aagataaacaaaaatagaaacacagcttactggaacttgaatatgttaagt<br>gaaataagccaggcacaaagaaaaacgtcacattttctcatgtatttttgggatcaaaaaattaaaataattgaactgataaacatagagagtagaagga<br>tggttagcagaatctgggaaggttagtggagggttgcacagcgggtggaggggcagagatggggatagctaatgggtacaaaaagttgaaagaataagat<br>atactatttgatagcacaatagggtgattatagtcaatagtaacttaattgcacatttcaaaataacttaaagagtgtaactgaattgtctgtaactcaa<br>ataacaaatgcttgacgggatgaacaccccattctcc	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	60	892	143	NA	intergenic	
0	chr6	125651491	125652361	2000166	0	+	L1HS160; RIP_L1_chr6_125_01	CTAAATAGGCAGAGGAAAGGAAAAC	TAAACTTCCAAGAGATCAGCACTTC	LINE	L1	L1HS	ctgaacagctgatgtggggcacagacaggggagggggagaaaggggcagggaggtgacccgaggcccactgatggggtgctggcagccctgaggctctgc<br>agagcctggtggccagggcggctgtgaccccagtccccacggcacagagtctctgaatcagtgtttcgcagccttctggtaggacaggagaggactcaga<br>ctggggtttcaaagagcaacagagggacaaggagtccaagcaggatggagattcaaattctaggtcctgaaaatggaggactaaataggcagaggaaagg<br>aaaacaggaagattaaacatttcgcaacctactcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaatttacaag<font color="green"><u>AAAAAAACAAA<br></u></font><font color="red">CAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACACTTATGCAGCCAAAAAACACATGAAGAAATGTTCATCATCACTG<br>GCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAG<br>GATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCCATTCCTCAGGGATCTAGAACT<br>AGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCG<br>GCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTAGATTAAGAAAATGTGGCACATATACACCATGGAATACTATG<br>CAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAACTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACA<br>CTGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGG<br>GGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCA<br>CAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAATTAAAAAAAACAAAACAAAACA</font><font color="green"><u>AAAAAAACAAA</u></font>aaaaaaacatttccttct<br>tcctggggaaaaggttggccctgagtgaagtgctgatctcttggaagtttatcttttgcatcttcccctctccaacctcctagtgactctccctccaggg<br>ttctggggtccttatgctgctctacatcaagccccacctgtactttgaagaatgaattggggggagacatttttaaaagggtacttgttaacctaactgt<br>atctccaattgactgaacttctgacaatgtggagagaaaacttggggttagaaacaatccaaggacggtggggtgtactaggcatttcacatgcaggaga<br>ggctcccctcacgccttggggctcaaaaggacatttctttaaggcaaaatgcaggtggtggagaagacatc	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	1071	99	NA	intron:HDDC2:NM:016063:4/6	
0	chr14	19624318	19624498	2000167	0	-	L1HS131; L1HS173; RIP_L1_chr14_019_01	CACCATCTAGTGATTTTATGTTCTGC	AATAATCCCCATTGACTGTGTACTG	LINE	L1	L1HS	aaaaaatttaaacatactaagaccctcgttctctaagaatgtcttatttggcctagattgctagattattttcttaactccaaatacaaaattacaagtt<br>ttcttttttattaattgcaataaaatataattctttgcaattaaattttcccctttttagccctttctttagttatgattttgggatttgtgttttatta<br>cttatgatcctatataatattgtaaatgccaatagtgtgatagacatattatgtatgtagagtaattaatatatcaggattatgtaacctaccagtttac<br>agttacctttaagaagtaacaccattatgaaatcctggatacttaatcttcaccatctagtgattttatgttctgctctgggttt<font color="green"><u>GAAAGGCACAGAGGC<br></u></font><font color="red">GGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCAC<br>ATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGGCACAGAGGC</u></font>ataa<br>aggagaaaactaatttcattgttattacattcctcagagactggcagtacacagtcaatggggattattaaaatatcctttatgccattatggaaaatgt<br>aacactgtattttacctatcaaattggtgacattttaaaggcaacagtcagtactcaggagggtatagaaagagaactagagatgaattatgagattttt<br>gtgtgatagtcatacatactattgctgaaattattttccacaataaacactgataactattctattcatgcaaaatattaatatttattctgtgttagta<br>atcttattttatatggacaaataaaaatgtatgcatttattatgtgcaacatattttaatatatgtatacaccgtggaatg	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	58	381	179	NA	intergenic	
0	chr3	81852584	81853099	2000168	0	+	L1HS177; RIP_L1_chr3_081_02	CAAGTTCCTCACCAAATGAAACTAC	TCCATTTTACTGATGTTGAATAGGC	LINE	L1	L1HS	tgtgtatgtgtgtgtgtgtgtatatatatatatatatatcttatatacacaaacccattgattttacagccaataacctaactccgatgaaacagaatag<br>gtctgaaagcacaggtacagtttggcaagtacagtggtcctctgcattgtgtgcatgtctcaatttattacatctcctccattacctattttattctttt<br>aactatttacccaaattgaaattgagataaggtatttaaatgttactgagcaactctactctgtaggtcttgtaatgatgtaatgtatgaatgtaaaata<br>acactgatacatttcacttaccatattatcaagttcctcaccaaatgaaactactataaccaagagcataatgctacaagcagattta<font color="green"><u>AAAGAAAACCCA<br></u></font><font color="red">CATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCA<br>CATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTA<br>TCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGG<br>GACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATG<br>TATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAATAAATAAATAAATAAATAAATAAATAAAAACACAT<br>GAAAAAAAAAAAAAAG</font><font color="green"><u>AAAGAAAACCCA</u></font>aagctaaatttcatgtaagtacaactaaatctgtgtgctaataatgtcatactgatacttaatttagtagcc<br>tattcaacatcagtaaaatggaaactttaaattcacctaagccttgtattgcttatggggaacagtttttcaattctgtgatcccaaagtgctctgacca<br>gacatactgatacaaataattactgttttggcctattcataattaaaacaagtgaaatagtgaactcacataggcacctcattacttatgggtcaacctt<br>tcccaagactgagttcacggagagctttgaccaaactgctcaaatggtatataattatacagtattataaatttatctgctgacatattttccctaccag<br>attataggtgccataa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	58	693	165	NA	intron:GBE1:NM:000158:1/16	
0	chr5	15959550	15965662	2000169	0	-	L1HS197; RIP_L1_chr5_015_01	TGGAGTAGAATTCAAGCAAACTGAA	AGAGTTTATGATAGGTCCCCATTCT	LINE	L1	L1HS	acgctgggctctgattctaaaggtcaccttatattgacctgggatacatttcgcatgggtagttccctgggcctactacagtctaagttcataatctctt<br>ctttaaagaccccagagcccctttctagggcagggcttttccagtgaatggacccaatattaaatagcacaaagactggcgtttcggtgggtccctgagt<br>gcgggaggcaggacttttatggtggagtaacatgggcctaattctagagtgatcatcttagttttcagaacttgtcatacttcttttttttttaatagaa<br>agctccattttaatgcaaagttaataataatgttttggaaattcagttgtggagtagaattcaagcaaactgaaatacttgtgg<font color="green"><u>AAAATCCTTCTAGGTC<br></u></font><font color="red">GGTGGGGAGGAGCCAAGATGGCCAAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAG<br>GTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACC<br>TGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTT<br>TTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACGGCAG<br>TCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCTGGGAAGCTCGAACTG<br>GGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCA<br>GACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTC<br>CCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGA<br>GGGTCCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCTACACCGAAAACCCATCTGTTCATCACCATCATCAAAGACCAAAAGTAGATAAAA<br>CCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGA<br>ACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGACCTACGGGAGGACATTCAAACCAAAGGCAAA<br>GAAGTTGAAAACGTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTC<br>GAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCAAGA<br>AGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACATCTGATTGGTGTACCT<br>GAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTC<br>AGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTT<br>AAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGG<br>GGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTA<br>TAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCC<br>GCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCA<br>AATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAG<br>TGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAA<br>GGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATT<br>CAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACT<br>CCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGC<br>TCTGTACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATT<br>GACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCA<br>GGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAA<br>GATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCC<br>TACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGC<br>AAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGA<br>TCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGA<br>TCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATAC<br>ACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGA<br>GTCCAGGACCAGATGGATTCACAGACGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGG<br>AATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATG<br>AACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGA<br>TGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAA<br>AGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAA<br>CCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACA<br>TAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGA<br>CATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTGTCAGGATACAAAATCAATGTACAA<br>AAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAG<br>GAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAATTGGAAGAACATTCC<br>ATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTC<br>TTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCA<br>TCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGA<br>GCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGGGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGC<br>TGGGAAAACTGGCTAGCCGTATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTA<br>AACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGC<br>AACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGG<br>GAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCA<br>AAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGA<br>AATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAA<br>ATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCAT<br>TTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCAC<br>AATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAA<br>AATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCT<br>CACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATA<br>GCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAATCTGCACAATATGCACA<br>TGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAATTTTTTGTGGATCCTGAACAACTAAAAAATAATAATTATGGTAAAATACATGTTACATAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAATCCTTCTAGGTC</u></font>aactatgtaaaatagctctatagaatggggacctatcataaactctgcaaagcacccatatctcaacagcc<br>tataatttctgagtcatgtttctctttagaaagatacttagaagtttatatttataggctgtatttcttaatggcatttaaatcaagtttgaaaaaataa<br>atttaaatgtaactatataacatagcattgaccaatgtgtaaagctcctcaataaaattttgcaatatcattaaaaaaaaatgcctgggtttggaaccag<br>gagggaaggaagtgtacatttgatatgttggcgatgatctttatttagaaccacttttctaggcaatctttgcttttagttcccttttaagcaaattcaa<br>ggcttataactca	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	6226	97	NA	intron:FBXL7:NM:012304:2/4	
0	chr3	2023592	2025194	2000170	0	+	L1HS213; RIP_L1_chr3_002_01	AATGCCTGATAAAAGTAGACACACC	GTGGGAATATATCTTCTTGGGTTT	LINE	L1	L1HS	acataacaaatatagggaaactgaagaagactaaagacaaaagatgactctgtggtttttggcttgctcaatgtggcagatggtggaaccattcagaaac<br>acaggacaatggaaacagaggagattagggctggtaaggtcagtcttgaatctgctagaatttttttggccttacagacagtcatgtggtaaagtctagt<br>aggcaaatgaatatacagcatggatctgaaagcagaagtctgtgctagagatattggctgtcacatgagtagatgtcaaataaagttgttcatatgcgca<br>aggctgcctaagagatggatttagataaagttaagggctttctggaactacatataatgcctgataaaagtagacacacct<font color="green"><u>GCAAAAGAAACATAGAAGG<br></u></font><font color="red">CCATACTGTCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATG<br>GAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACA<br>GTAACCAAAACAGCATGGTACTGGTATCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGA<br>TCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACT<br>GGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGC<br>ATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAGTGGGATCTAATTAAAC<br>TAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCT<br>AATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAA<br>GAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACAC<br>CAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACT<br>AGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAG<br>GACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAA<br>TGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAA<br>ATTGGAAACCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGA<br>CACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAG<br>TGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAGAAACATAGAAGG</u></font>ggtcagaatggaaaaagaaaacccaagaagatatattcccacaaaagccaaagcaaaagaccaagagaggattttttta<br>ttctcctatatttgcagctttgaagatcatctctacatgtaataacatcatattagtctggcattcttctcctagcattaaatattaaatttagcacaca<br>ttcttacatatattaccacatgtagacatagagatctttcagaataaacgagtattacagatgttcacattatttatctagagattttagtcattgttat<br>cctctaaactagagatctgcaaatgttttccacaaagggccagagagtaagtattccaggtgttggggaccatgaggtctctgtcacaagtactcaactt<br>tt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	1710	89	NA	intergenic	
0	chr3	34669367	34673181	2000171	0	-	L1HS214; RIP_L1_chr3_034_01	TAGCTGAGAAACCATAAGCCTAGAA	ACCTGAATGTCCACTCATTCACT	LINE	L1	L1HS	tttataacatatgtatattctattaaatacattgtgtaaatacaaacattcatgcacattctcttatatgtatttagacagtgctcagagccatacacaa<br>taacttgttgacttttgtaacctctatggattgggattggaatgtttagaatggagaaaaagactgttattatttaacattttaatacttatgggcatgt<br>attactttctaaaagttattttatttataaaagcctgatgcatttaataacataataaggagaaaaatatagctgagaaaccataagcctagaaagatag<br>aatttcagttatcaaagataattaatttttacattttaatgtatattctcatatattgaacaaaatttaaacagatatatcttt<font color="green"><u>AAAAGTTATATGTATA<br></u></font><font color="red">TAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGT<br>TTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCA<br>GTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCG<br>ATGCGGGCTCTTTTTTGGTTCCACATGAACTTTAAAGTAGATTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGT<br>AAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTGTCCTCTTTTATTTCCTT<br>GAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGT<br>TCACCCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGC<br>TTATCAGCTTAAGGAGATTTTGGGCTGAGATGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAA<br>TTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTG<br>CCAGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAAATACGTCCCAT<br>CAATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTT<br>GGCTCTGTTTTTATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTT<br>TTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGT<br>CTCTGCCCGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGG<br>TACCAGTTCCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTATTGCCACAATTTCA<br>GAGCCTGTTATTGGTCTATTCAGAGATTCAACTTCTTCCTGCTTTAGTCTTGGGAGAGTGTATGTGTCGAGGAATGTATCCATTTCTTCTAGATTTTCTA<br>GTTTATTTGCGTAGAGGTGTTTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCGGTGGTGATATCCCCTTTATCATTTTTTATTGTGTCTAT<br>TTGATTCTTCTCTCTTTTTTTCTTTATTAGTCTTGCTAGTGGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGATTCATTGATTTTTTGA<br>AGGGTTTTTTGTGTCTCTATTTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCTCTTGCTTTTCTAGTT<br>CTTTTAATTGTGATGTTAGGGTGTCAATTTTGGATCTTTCCTGCTTTCTCTTGTAGGCATTTAGTGCTATAAATTTCCCTCTACACACTGCTTTGAATGT<br>GTCCCAGAGATTCTGGTATGTGGTGTCTTTGTTCTCGTTGGTTTCAAAGAACATCTTTATTTCTGCCTTCATTTCGTTATGTACCCAGTAGTCATTCAGG<br>AGCAGGTTGTTCAGTTTCCATGTAGTTGAGTGGCTTTGAGTGAGATTCTTAATCCTGAGTTCTAGTTTGATTGCACTGTGGTCTGAGAGATAGTTTGTTA<br>TAATTTCTGTTCTTTTACATTTGCTGAGGAGAGCTTTACTTCCAACTATGTGGTCAATTTTGGAATAGGTGTGGTGTGGTGCTGAAAAAAATGTATATTC<br>TGTTGATTTGGGGTGGAGAGTTCTGTAGATGTCTATTAGGTCTGCTTGGTGCAGAGCTGAGTTCAATTCCTGGGTATCCTTGTTGACTTTCTGTCTCGTT<br>GATCTGTCTAATGTTGACAGTGGGGTGTTAAAGTCTCCCATTATTAATGTGTGGGAGTCTAAGTCTCTTTGTAGGTCACTGAGGACTTGCTTTATGAATC<br>TGGGTGCTCCTGTATTGGGTGCATAAATATTTAGGATAGTTAGCTCCTCTTGTTGAATTGATCCCTTAACCATTATGTAATGGCCTTCTTTGTCTCTTTT<br>GATCTTTGTTGGTTTAAAGTCTGTTTTATCAGAGACTAGGATTGCAACCCCTGCCTTTTTATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAA<br>ACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTG<br>ACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAAC<br>CTACTCATCTGACAAAGGGCTAATATCCAGAAACTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGAC<br>ATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCA<br>CTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACA<br>CTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCA<br>TTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGA<br>ACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATC<br>CTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAAC<br>TGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACC<br>TAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAG<br>AGTATAATAAAAAAA</font><font color="green"><u>AAAAGTTATATGTATA</u></font>aatttatatatatttatatctacttatatctaagcatatatgtatatatgcttacctatggaacattta<br>taatgtgaatatgatatgatttatatataaattgatcacatttgtgtatacaaattcttatcattgttactgctttatggtctatcctaatttatttaat<br>catcgagtgaatgagtggacattcaggttgttgaaattccctttcaacagatatttagactattccacctctacacaataaaacaatacagagtaatgac<br>agctacaaataagttaaaaatgaaagagaaacctctacaaataagacaaaagtaattaaaaacttagaaagtattaaccaattatcccacatgttactta<br>atttcagttgttaga	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	4159	328	NA	intergenic	
0	chr13	56691457	56692640	2000172	0	-	L1HS228; RIP_L1_chr13_056_01	AATATCCACTACCCAATTCCATAGG	GCTGCAATTTAGCAGGATTTCT	LINE	L1	L1HS	aacagattccgttttctattaattctatgtaattgttatgcgaatgaggaaactacatccttcaaaatgtttgcaaaccaggaaacatcatatgtatatt<br>caagttagaggaaaaagtggaaagaataagggaatttctagaaaaacaaagacgctctgggagtgcagtcatgaattgaatttgccatcctaaacagcag<br>tacttatgactaaaaattgtttaaacatttaaaaacttttagaagatattttaatcgagaaaataatgctgcaatttagcaggatttctgcagattttac<br>tagaattctatttgtgtgatattttctttgccttctgtagaaaaaaaaaaaaaaacaacaactcttccataagaattttaccatt<font color="green"><u>GAAAACTGGCAACTG<br></u></font><font color="red">TTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGC<br>ATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTT<br>GTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTTGCCTGGTCACT<br>CTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACA<br>TGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACATTTAAATCTTTAATCCATCT<br>TGAATTGATTTTTGTATAAGGTGTAAGGAATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAG<br>TGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAA<br>AGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATG<br>TGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATTAAATTGGAAACCATCATTCTCAGTA<br>AACTATCGCAAGAACAAAAAACCAAGCACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACT<br>CTGGGGACTGTGGTGGGGTCGGGGGACGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGC<br>ACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAACTGGCAACTG</u></font>a<br>atactcaaacagagcaaacacaaaccctatggaattgggtagtggatatttggaaggaatgtttcttttagccaagaccaagttttggaaacaaactgac<br>aacactaactgccttttaataaaaatcatttcactgcctcaatatgcgtggcaaacggctgcaagtgtcaggttcagataagctgaaagcaagatggctg<br>aaaggtacattttctaatcaacttcctgaattatctttgactcctggtatggcctcacatgtgacttaattatgaagcataacatgcaatattttcataa<br>caaaaaatgaaaattggtcttttaattctttggaaatggttcatgatgttatccttgccctgttacttcaatgaatttcggata	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	1383	184	NA	intergenic	
0	chr13	87649209	87651105	2000173	0	-	L1HS231; RIP_L1_chr13_087_01	GAGTATGAGAGCTCTGCTTTCTGTC	CTTGAAGGACTGGGATACTTGAAA	LINE	L1	L1HS	gcgtgttcattttgtgagtgtgtgtatgtgtgagtgtgtgttgagggagttgtgtgtttgtagtaggaagtaatcaggattcaggggacaaataagtcat<br>ttattaaatactttatttcacattagcgagaacaataaggtatcttctattaacaaaatgaaaagaaccacatttatcttcattaacaaagatccagaaa<br>aatagaagtcatctagttctctaaaagctcagaaaatattccagtttgtatatcttgaagtttatagaattgcccggaaaaacttaactggttcaagaat<br>tgtaatcttaccatacatacctgaaaaaacagacaaaatacatgttttcagatattggacaacggaccttgaaggactgggatactt<font color="green"><u>GAAAGAAAACAAA<br></u></font><font color="red">GCCCACTTGATCATGGTGGATAAGTTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATT<br>GGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCCGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTA<br>TTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCTCCTTGTACCTCTGGTAGAATTCAGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGG<br>TAAACTATTGATTATTGCCACAATTTCAGATCCTGTTATTGGTCTATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTCGAGG<br>AATGTATCCATTTCTTCTAGATTTTCTAGTTTATTTGCGTAGAGGTGTTTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCGGTGGTGATAT<br>CCCCTTTATCATTTTTTATTGCGTCTATTTGATTCTTCTCTCTTTTTTTCTCTATTAGTCTTGCTAGCGGTCTATCAATTTTGTTGATCCTTTCAAAAAA<br>CCAGCTCCTGGATTCATTAATTTTTTGAAGGGTTTTTTGTGTCTCTATTTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTT<br>GAATGTGTTTGCTCTTGCTTTTCTAGTTCTTTTAATTGTGATGTTAGGGTGTCAATTTTGGATCTTTCCTGCTTTCTCTTGTAGGCATTTAGTGCTATAA<br>ATTTCCCTCTACACACTGCTTTGAATGCGTCCCAGAGATTCTGGTATGTGGTGTCTTTGTTCTCGTTGGTTTCAAAGAACATCTTTATTTCTGCCTTCAT<br>TTCGTTATGTACCCAGTAGTCATTCAGGAGCAGGTTGTTCAGTTTCCATGTAGTTGAGCGGCTTTGAGTGAGATTCTTAATCCTGAGTTCTAGTTTGATT<br>GCACTGTGGTCTGAGAGATAGTTTGTTATAATTTCTGTTCTTTTACATTTGCTGAGGAGAGCTTTACTTCCAACTATGTGGTCAATTTTGGAATAGGTGT<br>GGTGTGGTGCTGAAAAAAATGTATATTCTGTTGATTTGGGGTGGAGAGTTCTGTAGATGTCTATTAGGTCAAAACCACTATGAGATATCATCTCACACCA<br>GTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAG<br>TTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGA<br>CTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAACTGTCCAACAATG<br>ATAGACTGGATTAAGAAAATGTGGCACATATGCACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAAT<br>TGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACA<br>CAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTG<br>GGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u>GAA<br>AAAAAACAAA</u></font>atggggtaagtcctacaactttcctagattgctgcagaaatcagtctctaagcccgagcaaaggtgtatgaaactagtctagtgatcttg<br>ctgagatgaggagacagacattagggtttagaaaggaaaggttaagatggctattatttatatagcagaatactggagataaagaagctgcataaacaaa<br>aacagatcacgaaaaactggccagggaaaccccctctccagtctttggtagagtaccaatctctgcatgcatgggtaaaatttcaaggccaaagaaagca<br>ccactggcaagcaagtaaacaatttttaccagacagaaagcagagctctcatactccataggatattaagtagaatctacagaacaactgtgtttag	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	2289	379	NA	intergenic	
0	chr11	36529736	36534760	2000174	0	+	L1HS291; RIP_L1_chr11_098_01	CTCCCACTACTTTATGGGAAGGT	AGGACTTCCAATTCCTAGTATGCAG	LINE	L1	L1HS	taataataagaaacatatttttgatggagaatagaaatagatttagttagtagaaatagtacttgttaacttagtgaattcagaggagatattaaagagg<br>aaagcgcagtgtttacattcatatgaactcaagtgttaggtgagccaagaacacagcagaagagccaataaaaggagcaaaaggttcattgacaattgta<br>ttgatcaggcacatttctggctacttcaattgagagcactacccatatattaatatagttataataaaaaacacatacaaatgaactgtggccatttaag<br>gaaaacaacacatggtttggctcccactactttatgggaaggtctggggaggagtttgtgcaatgtaaaaaaaaaaaaatgtatc<font color="green"><u>AAAAATCACAGTGTT<br></u></font><font color="red">GAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAATGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCAGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCGATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCAGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATAACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGAGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTATGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGTCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTAGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTGCAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATTAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAAAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCACCAAGTCAATCCTAAGCCAAAAGATCAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGTTACTGGTACGAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATTCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>CCAAAATTGACAAATGGGATCTAATGAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTCACAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCACCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTGTGAGATATCATCTCACACCAGTTAGAATGGCGATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAAGGGCTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAA</font><font color="green"><u>AAAAATCACAGTGTT</u></font>tgtgaactcaaaacttctatactgccaatctcttttaaactactatattatctgctga<br>aaagtcataattttcaataaaatgtttaataaatatgtgttgtcccatctatgctgcatactaggaattggaagtccttttagttactggcagatgttac<br>agcccactaccttgtttgcttgcccaggaaactgatgtcagcaagaatgatcaggtctacaaaacagtaagattagactaggtagtaagggcaatgcatg<br>ggttgaattttgtcttacaaggaaaacaatgttgaccttctaacctccctggtcagaatgtgactttatttggagattgggcctttacagaggtaatcaa<br>tgtaaaatgagttgatgagattgggac	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	58	5658	216	NA	intergenic	
0	chr2	133773961	133776882	2000175	0	+	L1HS337; RIP_L1_chr2_133_01	GGTACAATATGAGGCATCACGTA	GTAGCATCCTTTATAGCTTTGCTGA	LINE	L1	L1HS	ggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaacactgtctctactaaaaatacaaaaaaaaattagccgagtgtggcgg<br>aaggcacctgtaatcccagctacacgggaggctgaggcaggagaactgcttgaaccagggaggtggaggttgcagtgagccaagttcctgccattgcact<br>ccagcctgggcaacaagagcaaatctctgtctcagtcaatcaatcaatcaatgactttaggggcttactgagggtgggtgagacaaatgtacttaataaa<br>acaatttcggtacaatatgaggcatcacgtaattaagcaccagcatatttatttcatagaccgctagcaagactaatgaaaaagagag<font color="green"><u>AAGAATCAAATA<br></u></font><font color="red">GACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAG<br>AAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGA<br>AATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCA<br>TTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCTCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACA<br>CAACCAAAAAAGAGAATTTTAGACGAATATCCTTGATGAACACTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAA<br>GCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAA<br>GACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATTAATTAGGTATTGATG<br>GGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCAC<br>AAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGCGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTA<br>GGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCA<br>ACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAAGCATGGGTGAACT<br>CCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAG<br>GAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAACATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACA<br>GATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGC<br>CAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGG<br>TACCAAAACAGAGATATAGATTAATGGAACAGAACAGAGCCCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACA<br>AGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATAC<br>AAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTGAGGACATAGGCGTG<br>GGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAG<br>AAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACT<br>CAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAA<br>CACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCCATCATTAAAA<br>AGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGT<br>GTGGCGATTCCTCAGGGATCTAGAACTGGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAA<br>GACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGT<br>GGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAA<br>ACTATCACAAGAACAAAAAACCAAACACTGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTC<br>TGGGGACTGTGGTGGGGTCGGGGGAGGGGGGATGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCA<br>CATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAATAAAAATAAAAAAAATAAATAAATAAATAA<br>ATAAATAAATCTTGAAGCAAGC</font><font color="green"><u>AAGGATCAAATA</u></font>atttgggctctagttttcacattacaattttgccattccaagatgatagtttcttagaatctaaca<br>gtttttagccagacaaggacttagtatatattctgtagtctaactgaaatattttagatcagcaaagctataaaggatgctacctgagcaagcaaataag<br>aacatgaattgaactcacctccagagactcctgtgttgctcctcaagctgagtcagcagatgctcaatgtatttattggagtccatgtattcctgcacaa<br>gcagacaaagacagatgaaaactcactatgacagtccccaccatcctaagaccctgaccttatctctacaaggagtatttttgacaacattatccctact<br>tcccttccggttctaggattct	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	3174	210	NA	intron:NAP5:NM:207363:4/20	
0	chr2	142505137	142505577	2000176	0	-	L1HS348; AF417123; RIP_L1_chr2_142_01	GAAATGGGAAGAGGAGTTGACA	CCTATTTTTATCTCAGCTGATGTCG	LINE	L1	L1HS	gtggggcattctccctatgcatgtgtctgtttcttttcctcacattcttttatgaagacaccagacatatgggattaggggcccattctactccactatg<br>acctcatcctaactacttcttcagtaactctagttccaaataagatcagattctgagagactggggattagcatttcaacacataaaatcaggggcacaa<br>ttcaaactgaatcagatgttgaacaatggacgtagagagtttggaaaggcagctgcgggaaatgggaagaggagttgacaatatgtcattttttttttag<br>aaatgacaatatgtcattttttttttagttgacaatatgtcatttttttctcttcaatacattaagagaatcttatcaataaataagt<font color="green"><u>AAAATCACACAT<br></u></font><font color="red">GGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACAT<br>TAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAA<br>AAAAAAAATAAGTATAATCAACCTTTCTCTAAATATATCTGTTTTTACCAGATATATTGAGTTCAGCAATAACATGAGAATCCAAACTATTCCAATGATT<br>TGATTGTTTATCTCTGTCTCTTTCACATGCACATTTATCTCATTACACACACACAAGAAGAAAGAAAGCTATATCATATTATATAATGAGGAAAGTTAAC<br>ACAGAAACATAATAAACAGAAGACTTGTGTGAAGATTTGTA</font><font color="green"><u>AAAATCACACAT</u></font>atgacaaacacttaaaagtatataattcagagtaaaaatatgtaagg<br>gtataagaaataacatgaagaacttgaaagtatgctacaaccttaaaaaatgtctttgacaggtctataagaacaaaattgcgacatcagctgagataaa<br>aataggttgcaacgggactgaggaacatttggatttcaaatatctaataaattgtggctgggaaaagctaaagtacttcagtgacactgcttggtactaa<br>acagttagaacaaccagccccaatttcaaaataactaacataaccaagggctgcccttggcatcaagactgatttctttctaggtcatgagtcccaggca<br>tatcatctctaataaaaatcttacacagacaactttatttt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display; E:Insertion-specific detection:PCR	NA	60	748	283	NA	intron:LRP1B:NM:018557:1/91	
0	chr2	107998438	107998554	2000177	0	-	L1HS349; RIP_L1_chr2_108_01	GGAGCTGGGAGAATTATTGAAAC	CCACTCTCAACTACTGTCCAACAAG	LINE	L1	L1HS	catgctgataactagttgaatacaagattcaaagtcaaaatgatttcccaaaagctagataaattttgtcacagttttcccagttggaaagacagtttca<br>ggaaagcttgtatgcatcatataatgtactaatagcaagtaaataccatctacatctgggaaactgaggcctacagaggttaagtgacttggctaagacc<br>atgcaactcttgtggccctcaatctgatgctgagctgcttttcaaagccatgtgtgtcttgttctatagtcccactctcaactactgtccaacaagttac<br>gctacaattctccgaaaaagtttcctaataagggcgtaatgaaaaatctagagatataaaagatcttaaaggttatctaaataatatacctaatgct<font color="green"><u>AGA<br></u></font><font color="red">TGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAA<br>AAAAAAAAAAAAAAAGA</font><font color="green"><u>AGA</u></font>cttacaaaaataaaagagatccagagagtttcaataattctcccagctccgtccattttcagaacccaaaagagcgtgat<br>tcctggccccatccttctactgtattctcttcagctccacgtgtggcactgcactatcagaagctgttttcaattacttctttcagtaatacctactgct<br>ctaaattctatcactggacttttagtcttacctggtttatgcttttaactgcctctatatgacaaactgataaatcaacacagcagtttggcttcaaaat<br>acataatgcaatatctcttttaaatagataactatagttttccaaccaaaaataaaggcagaatcaccacatattctctgactttagagaatttaaataa<br>gatacaatgactgtttt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	229	114	NA	intergenic	
0	chr2	82920367	82921745	2000178	0	+	L1HS353; RIP_L1_chr2_082_01	TCCATGATAGAACACACTCTTCC	AATCCCTGTCAAAACCAATCC	LINE	L1	L1HS	ccctgtcaaaaccaatccttgcttaagagtttacttccggccaagagaggtggctctcatgcctgtaatcccagtactttgggaggctgaggcgcacaga<br>tcatgaggtcaggagatagagaccatcctggctaccaccgtaaaacccagtctctactaaaaatacaaaattagccaggcgtggtggcacgcgcctgtag<br>tcccagctactcgggaggctgaggcaggagaattgcttgaacccgggaggcacaggttgcagtgagccgagatcatgccactgcactccagcctgggcta<br>caacgtgagactctgtctgaaaaaaaaaaaaaaaaaatttacttccattgttaatctgtatttttgacttattttttgagtgt<font color="green"><u>AAGAATATCTTTCTTGT<br></u></font><font color="red">AAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTTGCCTCTTCACTCT<br>GATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATG<br>AAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTTACGTTTAAATCTTTAATCCATCTTG<br>AATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTCCATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTT<br>TCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGACCTATATCT<br>CTGTTTTGGTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAAC<br>ACATGAAGAAATGCCCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAA<br>GTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCATCCATTGTGGAAGTCAGTG<br>TGGCAATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAG<br>ACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGACTAAGAAAATGTG<br>GCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAAATGGAAACCATCATTCTCAGTAAA<br>CTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCT<br>GGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCAC<br>ATGTATACATACGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATATCTTTCTTGT</u></font>ggaa<br>gagtgtgttctatcatggaataatatacaaaagccattggctttctctcctttggtatcttttgcttttagattgttatcttagtgagtcttattgatat<br>gaaaatttaccctttaagcataacagtgggattgtgctattttatccgataaagtatatgatcaactatgcaccctgacatctcagaagagggtaaatta<br>gcattcttctttgagtgtggtgggatggaagaaatctaagggagaagacaaaggttcatagatgtacagatactggtgagatggcagattcacaaaatca<br>acaagtatcacaaaattttaaggtattaggaatagaataaatagatttgtggaggacatgtcggcatcacttcttgggt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	59	1822	426	NA	intergenic	
0	chr3	26414511	26420540	2000179	0	-	238595; L1HS364; RIP_L1_chr3_026_01	CTTAGCCTCTGTCTTTAGGGAAAAC	CATGACCAACGGTGCATAATA	LINE	L1	L1HS	aaaggaaaatagaaaattatccaaaattgaggtgatctgcttaagaaaaatctaattttatttctctacccagtttgtatctcaactgtttctaatatca<br>tcacacctagataatctgactattcttaactttgttaagaatttttttttacttatgtgatccatgtggacacaaaatcttttttttttttttctaaatt<br>ttaagaatcagcactaagtgctaaggcacaggtcacaaattcaagactctacagagaaagcagataatggaaatgggtaaagcagccttggccatagaaa<br>aaccagtctacatgtggcagtaaatagcattggaaccttagcctctgtctttagggaaaacacctccagccaagtgtttctgattctt<font color="green"><u>AAGAAAACAAAC<br></u></font><font color="red">GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACAGTGATTTCTGCATTTCCATCTGAGGTACCG<br>GGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCTAAGCAGGGCGAGGCATTGCCTCACCTGGGAA<br>GCGCAAGGGGTCAGGGAGTTCCCTTTCCGACTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGA<br>CCGGCTTAAGAAACGGCGCACCACAAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAG<br>ATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGA<br>GCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTA<br>AGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACAGGCAGACTGCCTCCTCAAGTGGGTCCCTGAC<br>TCCTGACCCCCGAGCAGCCTAAATGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGCCCTGCAGCTGAGGGTCC<br>TGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCAAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAA<br>AGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAG<br>CTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTT<br>GAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAAC<br>TACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAA<br>GTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGT<br>GATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAA<br>TACAGAGAACGCGACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGGAGGAAAAAATGTTAAGGGC<br>AGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACA<br>AGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCTGCTGCA<br>AAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCGCATGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGG<br>GGTTGCAATCCTACTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACA<br>CATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCA<br>CCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCGGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAAT<br>TGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAA<br>GACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAGTTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>CAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATTAAGTGGGCTTCATCCCTGGGATGCAAGGCTG<br>GTTCAATATACGCAAATCAATAACTGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAACTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTT<br>TATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGCTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACAC<br>TTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>CATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGG<br>TGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG<br>ATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAA<br>AACTTAGAGTATAATAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAACAAAC</u></font>aaaaaatgtgattattatgcaccgttggtcatgggcattttttccccaagaccccatt<br>ctgattctgggcttgctttccagtgagttttatgtgcttcaaacaggaaacttgattaacccaaaagacaggcttccctaagcaacagaagtagcctaga<br>ggaggcatttacaccagaaaaaagagacattaaactacctcgttcctcccacaaaaagcacaaactccaataccatagttcaactgtggctgctttacct<br>gaatcaaaaatcctcctcttcaatggggataaaagggtatctcagttatccctagagctttccattagcagatttgttttaaggaataaaaatgtaaaaa<br>atccataccacagtaaaaagataatttaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	6139	97	NA	intergenic	
0	chr4	18779281	18780040	2000180	0	+	L1HS391; RIP_L1_chr4_018_01	GTGGACATCAGAGTATCCCTTTCT	AGAAGGGTACATGACAACTGGTTAG	LINE	L1	L1HS	atcagtaaaggctcgcttctgtattattgtggggtaaattgaattaaattcagaaaaatttcccaagtcccaagcctttatatctttatctttctatccc<br>caattcctaccatggtatctggcccaaattaggagctcaataaatatttttaaatgaataaatgttaggtgatacaaaggatgtcaacatgaataagatt<br>ttgtcttgacactcaacaattttgaaaaatgattatgagggctaattaaaacatatcagaataattccaatgtctgattatatattaaaagttacaaagt<br>agtatgtgagttctgtgattagaagggtacatgacaactggttaggaaagaagaactggaagacttaaagcagaaggcaacatt<font color="green"><u>AGAAAAGAATATCAAC<br></u></font><font color="red">CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAATCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGATCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAATGTAAAAAGAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAGAATATCAAC</u></font>atgtgattgagaaagggatactct<br>gatgtccacacatataattcagatacattgcaatgttttccttcaaggaggggaccatgtctattatatctgcatccttgccacattatacagatattga<br>ataatcctagaggcacgcagtaaatagtaaatagattgtgtagttttgtacgtaacacagactggcttgattgataaaattgatcagctaccatgaaaaa<br>gttgggattacctaattaagctaatttgttgttgtttgttgtatttttgatagttagaagaaatctgcacagaggagaattttgccaattattacttaat<br>attctgatataaattattgagcaattttataaaagttcaaagaatcctcacaaccagcat	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	889	113	NA	intergenic	
0	chr4	147759280	147762642	2000181	0	+	L1HS406; RIP_L1_chr4_147_02	GCAAGTTTTACCCATAGTACACAGG	GTATGTAGAAGGCAGGGGTACACT	LINE	L1	L1HS	gtagcatccaaggcaggggatgggacaccagttaccttttacagttttccctccatctctggcaccaaagatgtttactccaccctctctgcagactctg<br>aatcacatgtcaggtatcctggatggccatgcctttttcctccgggagtttttaagaacacagctccacaatgccattgggcttttctgataaatgtctt<br>ctcttgcctctgttcccagatagatgtggtgatgtcatgttctcttggatcatttttatgccgtattgaatgagggatagatatacttgagtgaatggga<br>ccattctttcttctgcttatatgggtctcacctctccttcctgctgttggtggtatgtagaaggcaggggtacactcagcatt<font color="green"><u>GAAAAAGATCACAATCT<br></u></font><font color="red">TTCCCCATTGCTTGTTTTTCTCAAGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATC<br>TCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTT<br>AGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTATTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGA<br>TGGCATTGAATCTGTAAATTACCTTGGGTAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTGTC<br>CTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCA<br>ATTGTGAATGGGAGTTCACCCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGA<br>CTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTTGAC<br>TTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCTGTGGCCAGAACTTCCAACACTATGTTGAATAGGAGTGGTGAGAGAGGG<br>CATCCCTGTCTTGTGCCAGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTT<br>TGAAATACGTCCCATCAATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCAT<br>GTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCA<br>TGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCT<br>CTTTTTTGGTTGTGTCTCTGCCTGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAG<br>TTTCAGAAGGAATGGTACCAGTTCCTCCTTGTACCTCTGGTAGAATTGGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTGGGTAAACTATTGATT<br>ATTGCCACAATTTCAGAGCCTGTTATTGGTCTATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTCGAGGAATGTATCCATTT<br>CTTCTAGATTTTCTAGTTTATTTGCGTAGAGGTGTTTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCAGTGGTGATATCCCCTTTATCATC<br>TTTTATTGTGTCTATTTGATTCTTCTCTCTTTTTTTCTTTATTAGTCTTGCTAGCGGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGAT<br>TCATTGATTTTTTGAAGGGTTTTTTGTGTCTCTATTTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCT<br>CTTGCTTTTCTAGTTCTTTTAATTGTGATGTTAGGGTGTCAATTTTGGATCTTTCCTGCTTTCTCTTGTGGGCATTTAGTGCTATAAATTTCCCTCTACA<br>CACTGCTTTGAATGCGTCCCAGAGATTCTGGTATGTGGTGTCTTTGTTCTCGCTGGTTTCAAAGAACATCTTTATTTCTGCCTTCATTTCGTTATGTACC<br>CAGTAGTCATTCAGGAGCAGGTTGTTCAGTTTCCATGTAGTTGAGCGGCTTTGAGTGAGATTCTTAATCCTGAGTTCTAGTTTGATTGCACTGTGGTCTG<br>AGAGAGAGTTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAG<br>ATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATG<br>TCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAG<br>TGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAA<br>GAGAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTCATGCAGCCAAAAAACACATGAAGAAATGC<br>TCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACA<br>GGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTTAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAG<br>GGATCTAGAACTAGAAATACCATCTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGT<br>ATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCA<br>TGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACA<br>AAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGG<br>GGTTGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGT<br>AACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAAAGATCACAATCT</u></font>aggaaggcattgatcatggc<br>ctaaaatagttcaagagaaaacatggtcagaaaatatgttgttttatctttagtctatacaattctgaaaagtaaatttaatattaccagaaaacagatt<br>ataattcacattttcctgtgtactatgggtaaaacttgcatttgaggtcattatccacaaaacacaataaccatattggaaagcatcaatgggagccagt<br>attcatgggcagcagggtggatgtaaccagcacgaaataaatggtactagagcaccacaggggcaagaaaccctacattgtattaacacgaaccagttca<br>aaaagctactttttctttatggtgggagatatacaatcagccaggaacagcatatttaacaat	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	3589	209	NA	intergenic	
0	chr4	29142069	29143066	2000182	0	-	L1HS415; RIP_L1_chr4_029_01	TCAGACCCATATATGAGCATAACC	GCTTAGAAGAATTTTTAGCCAGGTG	LINE	L1	L1HS	taagagtacagtatataattttatctaatcccaaatagagatatgggtaaaaataattataaattttgggatatgatgaactggaagaaggaaaaattta<br>agtttacatgagaaatgtactgatattcctgcataaggtcagacccatatatgagcataacctaaccattaactaaaagagagcatttcaaggatattct<br>tattcattcatacatattaattgaagacctactatgtaatagacacttttgttggcactgtggatatctaacaatcaggataggaaagaatcactacttt<br>caacatgaattatttggcagagagagaggcaaacacataggtatgtatataataagttagatggtaatgagaactaataaaatgaagtag<font color="green"><u>AAAAAAGAGA<br></u></font><font color="red">AATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAA<br>ATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCAT<br>TTGACCCAGCCATCCCTTTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCAC<br>AATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAA<br>AATGATGAGTTCATATTCTTTGTAAGGACACGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCCCAAGAACAAAAAACCAAACACCGCCATATTC<br>TCACTCATAAGTGGGGAATTGACCAATGAGATCACCATGGACACAGGAAAGGGGAATATCACACTTTGGGGACTGTGGTGGGGTCGGGGAAGGGGGAGGG<br>AATAGCACTGGGAGATATACCTAATGCTAGATGACACATTTAGTGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGT<br>GCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAATTTAAAAAAAAAAAAGAAAAGAAAAAAATTAGGTAGAAGTTTCTGGATCAGGGTGAAATTTT<br>AAATTTAATTTTGAATAAGGGATTCAAAGAAGGCCTCCATGAAAAGACATTTGGGTCATGAGTGGAAGGTGATGAGAAGCAAATCTTATGGATTTCTGGG<br>GGAGAGATATTCTAGAAAGAATGGCAAGTTTCAAAGGCCTTGGAAAGGAAAGTGTCTGACGTGTTCAAAAAATAAGGCTAGTATGGCTAAAATTTTCTGG<br>AC</font><font color="green"><u>AAAAAAGAGA</u></font>ttagaggtagaaaaacccagggtcactcagagatcttaataaatattaaccagttcacctggctaaaaattcttctaagccaactggt<br>aatatatacaccagctccataacaactacttacaaatgaactaagtcttgaagagtagtttttattatttattttgcattacaccattagttcccattat<br>ctaaaaatacttatgttgaaatgcattttgtatgttgcagatgaatctaagttttttccaattagaactacgaatgccaataataaacaaatacacagat<br>agctttctagaaatctttattattgagttttccctcatattttaaaagtttatgtcacttatatattttggatttgagaaagacgacatgagatcacatg<br>ac	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	56	1360	590	NA	intergenic	
0	chr4	71229214	71234677	2000183	0	+	L1HS423; RIP_L1_chr4_071_01	CTCCCTGTCTTCTGGGTTAAAATA	GGAAGTCCCACTTTTTCAGTAGAG	LINE	L1	L1HS	tcttctaacaacactggaaaaagactcattctagcattaacactaaactgcaatctgctttcatctaattagctaaaccttaaggttgataacacaagga<br>tgtttgatacaattaacgttattattaaaaatactccctctgaaattgagaatataattcttaaaaataatgcagttatccacatcttgattcttgtttc<br>tgggtgaattttgacacatgacaccagctccctgccactgacaaccctccctgtcttctgggttaaaataacagcctgcagaaaaaacattcctaaaaca<br>attttaacctacaaaacttgagactctcactattactcaagtaaattcaagaagaagtaagaaatacaatgaaaaagagaacact<font color="green"><u>AAAGACCCAAACAGG<br></u></font><font color="red">AGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGA<br>GGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGTGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCA<br>GAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAAC<br>TGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTG<br>AGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAAT<br>GTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAG<br>CCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAAT<br>GAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAA<br>ACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTC<br>GAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTC<br>AAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATT<br>TTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCAC<br>CAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCG<br>AGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAA<br>ATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAG<br>AGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACA<br>GACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATG<br>CACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCC<br>ACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGA<br>ACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCA<br>AATGTAAAAGAACAGAAATTATAACAAACTGTCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTAC<br>ATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACC<br>ACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACA<br>CCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGA<br>AATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAG<br>AAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCAATCCCACAGAAATACAAACTACCATCAGAGAATACTACA<br>AACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCT<br>GAATAGACCAATAACAGGATCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAG<br>AGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTC<br>TGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAA<br>CCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTA<br>ATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAGGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAA<br>CTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGA<br>AGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAG<br>AAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATGTAGAAAACCCCATCGTCTCAGCCC<br>AAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAAC<br>AGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAG<br>GAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGG<br>CCATACTGCCCAAGGTAATTTATAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATG<br>GAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACA<br>GTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACACAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGA<br>TCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACT<br>GGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGC<br>ATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGAGATCTAATTAAAC<br>TAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCATCCTACTCATCTGACAAAGGGCT<br>AATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAA<br>GAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACAC<br>CAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACT<br>AGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAT<br>GAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAA<br>TGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAA<br>ATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGATGGGAATTGAACAATGAGATCACATGGA<br>CACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGGGGAGGGGGGAGGGATAGTATTGGGAGATATACCTAATGCTAGATGACACATTAG<br>TGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAATAAAA<br>TAAAATAAAATAAAAATAAATGAAAAAAAAAAAAACAAAAAACAAAAAAAGAAAAAAAAAAAAA</font><font color="green"><u>AAAGACCCAAACAGG</u></font>ccaataactattagttattat<br>ctctactgaaaaagtgggacttcctgttatgaataagggaactaactgaattccctgctacctaattaccttctgtagctatacttactgacaaaaacac<br>cattaatttttttagataccaattttttttaatactatgaatcttaagggaaaatggcttcacctcaaaaatactctgttacttgcttggaagatagacg<br>actttaagctgatgctgataaacttgtggcttccaaagttttccttactaattctaaacccaaaaggtgcctggcagtctctgctatgtctgtttcaagt<br>aaccctagctctatatcaggagacattttccttataaacagaaacatggtaaatcttaagttcc	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	5680	201	NA	promoter:C4orf35:NM:033122	
0	chr5	155421520	155427555	2000184	0	-	L1HS450; RIP_L1_chr5_155_01	GTGAAGACTGTTGGTCAGTTACTTGT	GTCATTGAGATTGGCAGGTAAAAG	LINE	L1	L1HS	catattctcactcataagtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacactctggggactgttgtggggtggggaaaggggg<br>gagggatagctttaggagacatacctgatgctaaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaactaacctgcacat<br>tgtgcacatgtaccctaaaacttaaaataaaataaaataacataaaataaaataaaataaaaataaaaatataaaattctagggacatcacaggccactg<br>caggtagagaggaaggttgaacagtgaagactgttggtcagttacttgtttcaacaaaatttctaaagaaagaattttgccaatt<font color="green"><u>AAAAAAAAAAAAGTG<br></u></font><font color="red">GGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCTCTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGAGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGATGGTCGCACCTGGAAAATAGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGG<br>TCCCTGACTCCTGACCCCGGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCT<br>GAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAA<br>AACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACA<br>GAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCA<br>AAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTGTAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGC<br>TCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCAATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGA<br>GAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTAC<br>CTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGAT<br>TCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATG<br>TTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGT<br>GGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTT<br>TATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAG<br>CCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGAT<br>CAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATC<br>AGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAA<br>AAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCGACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAA<br>TTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGA<br>CTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCA<br>GCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTCTTCTCAGCACCACACCACACCTATTCCAAAA<br>TTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACT<br>CAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATA<br>AAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATG<br>CCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAG<br>GCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGATTTTTTGAAAGGATC<br>AACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATC<br>CCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACAC<br>TCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGT<br>CCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAA<br>TCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAA<br>CATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATG<br>CAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAG<br>CCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACC<br>CACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCGCAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATA<br>GTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACA<br>TGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAA<br>ATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGA<br>ATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCAT<br>GCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAACGCCATCCCCATAAAGCTACCAATGACTTTCTT<br>CACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATC<br>ACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGC<br>CCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTG<br>GGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAA<br>CCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAA<br>CAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGA<br>GAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAA<br>AAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAA<br>TGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAAT<br>AGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCAATTCCTGAGGGATCTAGAACTAGAAATACCATTT<br>GACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA<br>TAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAA<br>TGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCA<br>CTCATAGGTGGGAACTGAACAATGAGATCACATGCACACAGGAAGGGGAACATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGC<br>ATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATG<br>TACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAAAAAGTG</u></font>aaaactcctggaattatcaccaaatatcttttacctgccaatctcaatg<br>actgaattattcaaagacatatattaatgtaacttggaggaacactccaacacatgtccccaaactgtcagttcatctatgaaactgtccagacaaccca<br>ttagatatttgttgcctttgggtcttactttttctttacattgagaataaatttctcctgttcctagttttctatttcttcctaattaacaacaattgtg<br>cattgtccttccactaacacctggcatagatcaaatttctactgtgattcctacatttaacacttcccctgaaaagagctttatttccattgaggggtcc<br>aattcattaacattcatgcagtgggtttgtttttaa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	6179	128	NA	intergenic	
0	chr14	46265414	46266723	2000185	0	-	L1HS512; RIP_L1_chr14_046_01	AAAGAGACAATCCACAGCATAGTTG	GATTTATTCCTTCATGGAGATGTGC	LINE	L1	L1HS	tgttaatattttttaaaaaagaaatcacttatttgtctaacaaggggaattaagttaactttattataatatatgattcattcataaaataaactactat<br>gcagttatcaaataatattattgacaaatatttcatatcatgaggacatcaggaattttataaaatagtaagtatattacgattctctatttctaaagaa<br>tgtatataatcaaatgtatacttggatgtgcatataaagtattgatggatatttatcaaaatgtaaaggatggttctccctgaagtaagatattactgaa<br>gtgttagtgtaacttttattttttctttatattttttcaaattttcagagtaaacatattactgtcaggaagggaaaaatgttttaag<font color="green"><u>AAAGAAAATCTT<br></u></font><font color="red">GACTATGTATCTGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTT<br>CCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCAT<br>TGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATGGGATCTAATTAAACTAAAG<br>AGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATAT<br>CCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGA<br>CATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTT<br>AGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTC<br>AACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTA<br>TAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAGAGACTTGGAACCAACCCAAATGTCCAACAATGATA<br>GACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGG<br>AAACCATCTTTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAG<br>GAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGT<br>GCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAGAA<br>AAAAAAAAAA</font><font color="green"><u>AAAGAAAATCTT</u></font>aaaatcacaaacatggatacaatatatgtaatacaacattttttctaaatggttattttgaattaattttgcttttag<br>aattttttctcagcacatctccatgaaggaataaatcataaaatgaatgaatatgctaaatcatgagagcagaatcattaattaagaggtagtgtgattt<br>aagagatggaaatggaaaagtggcaccagttatgctttttataaccataaatgataagtaatatatgctttctaagtgtttgatgtttgttttcaaagaa<br>cattggcatggtgtttgaattcaatattcagtcgttcacttttagtgagattatgccctttccagatgccttgtaatttatttcaaaaaagtatagaaca<br>gttaatgttt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	61	2071	722	NA	intergenic	
0	chr18	70839486	70840318	2000186	0	+	L1HS558; RIP_L1_chr18_070_01	TGCTTTCTTTCTTTCACATAGATCA	GCAGACACGAATCACAGTTTGTAT	LINE	L1	L1HS	agctgcacagttaagaatcctttttttcatgggatgatgtttcttgtcaataagatttaattccctgaggcagagagagttttaattcctttttctttag<br>tttactcagcttagctcagtgaagggcaaagcaaaaacaccaagaaaaattactttttgaattaaatgaatgtcttctttgcctagccccatccttccca<br>ggctgtctgtcagctcttgcctccttcagtgtgggaaggtcccctgtcctatcactacaggcctttgatgggtcaaaatacctgtctgtgttctcctcta<br>atccacttttccatataatgctttctttctttcacatagatcatacttagatcatcacttctatgttgatgtacatatttttttcaattaacgaagg<font color="green"><u>ACA<br></u></font><font color="red">TGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCAC<br>TATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACAC<br>TGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCAT<br>TACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAA<br>CCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCC<br>TTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATT<br>GAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCT<br>AATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGA<br>GTATAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>ACA</u></font>aaggtaaaacttaagtattttgtttgaaagttgtaggtttatttatacaaactgtgattcgtgtctgct<br>ttcccctggcttaaccctttggacatcttttcattgctaccatagccacatggcagaacatatttctgagaaagaaaataatttagagtctactccagga<br>atataggaatattgctcacaaatgtgccagacttttaatttcttatttttgaatcattgtattgaagaataacagtgaactcaaatctcataaagattgc<br>tgatagtgtaaaagagaatgattcttatactttgatgcccacaaaaagaataaatttttatgaatatgagtcactttaggaaatacgtcttgattattct<br>tccattattgaagaaattggcctgatca	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	61	983	128	NA	intron:ZNF407:NM:017757:7/8	
0	chr6	13611043	13611044	2000187	0	+	L1HS2; RIP_L1_chr6_013_01;AC208509;AC217408	ACCAAATATCTGGACACTTTCTGG;NA;NA	GAAGTCAGCAGTGGTTAATTTTACA;NA;NA	LINE	L1	L1HS	caccactgtactccagcctgggcaacagagcaagactctgcctcaaaaaaagaacaacttaaaaaaaaaagatactatatttaagccaatactataccag<br>actaaaagaatataccacagttatatgtgtcaatatgcattggtctcagaaacataacattgattaaaataaaaatgtgattacttttatattgatgtta<br>aaaccaatgcaaacaattctgcattttaatgaatacatatgtgtgtgtgtgcatgtgtgtgtgtatctgtttaaaacaaattggaagaactcataggact<br>gtgtgctaaaactgtatgtaaattaaacttcaatacatggcttaaaaaatagactgggaagtcagcagtggttaattttacatgtc<font color="green"><u>AAATGTAAAAATGA<br></u></font><font color="red">GAGTCGAGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCAT<br>CTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCC<br>TCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTG<br>CGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCAC<br>AGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCG<br>AACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCT<br>CTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACAGGCAGACTGCCTCCTCAAGT<br>GGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCA<br>GCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGA<br>TAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCA<br>ACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAG<br>GCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGACGGAGCTGAAAACCAA<br>GGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAG<br>TGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTG<br>TACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCA<br>GATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAA<br>ATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAG<br>AGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAAGTAAGCTTCATAAGTGAAGGAGAAATAAAATA<br>CTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTAC<br>CAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATTGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAG<br>GATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCC<br>ATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAA<br>AAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGAT<br>CAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTT<br>AGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAAC<br>TCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCA<br>AAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGA<br>ACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAA<br>ATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAA<br>ATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAG<br>AAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGG<br>ATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACGCAATAAAAAATGATAAAGGGGATATCACCACCG<br>ATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCGCTACGCAAATGAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATA<br>CACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAG<br>AGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGG<br>GAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGAT<br>GAACATTGATGCAAAAATCCTCAATAAGATAATGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGG<br>ATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAA<br>AAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAA<br>ACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAAC<br>ATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACG<br>ACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACA<br>AAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTA<br>GGAATCCAACTTACAAGGGATGTGAAGGACCTCATCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTC<br>CATGCTCATGGGTAGGAAGAATCAATATCATGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTT<br>CTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGC<br>ATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAG<br>AGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTG<br>CTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTT<br>AAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGG<br>CAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATG<br>GGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATC<br>AAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAG<br>AAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGA<br>AATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAAGGATCTAGAACTAGAAATACCA<br>TTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCA<br>CAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAA<br>AAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCACATATTC<br>TCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGAT<br>AGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCAC<br>ATGTACCCTAAAACTTAGAGTATAATTAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATGTAAAAATGA</u></font>ctgggccagaaagtgtccagatatttggtcaaacattattgtg<br>gatgtttgaataatagaataacatttaatgagatgaacatttgaatccatagactgaattcagcagattgccttcaccctggtagaggtggaggttggcc<br>tcatccagtctcttgaaggcctaactagaacaaaaaagccagctctcccctgagtaaaagagaatttctcctccctgactgccttcaaactgggacattg<br>gcttttttcctgcctttggactcaaactgaaacatcacctctttctgggtgtagagcctgccaccttcacattggaactataccatcagctctccttggt<br>ctccagcttgccaactcaccctgcagttcctgggactttccca	Other;OTHER;OTHER	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA;NA	60;NA;NA	6131;NA;NA	74;NA;NA	NA;NA;NA	intergenic;intergenic;intergenic	
0	chr17	26683724	26684063	2000188	0	-	L1HS14; RIP_L1_chr17_026_01	AAGTGGATTAACAGTAACATACAGA	CCAAGCTGATAACTGATTATCTCA	LINE	L1	L1HS	aataaacattttaacattaattctttaggataaatgctaaaaagcagaattatgaggccaaaaggtatgaatagtcttaaggtcttgttatccacttcca<br>aatgcctttctagaaaaattgcctctactcacaattccacagaccaccaggaatggatcttaaaaaaaaaatctttgccaagctgataactgattatctc<br>actattctttcaattggcttttattagtgaatttcttaaaatataaatattctttttgagatgggggcctcactatgttgtccaggctggtctcaaactc<br>ctgggcttagcgatcctcctgagcaggtgggattacaggcatgtgccatggtgcctggcttttttctttttttgtacaaatattctttttt<font color="green"><u>AAAAAACAT<br></u></font><font color="red">AAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATA<br>TTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGG<br>GATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTG<br>CACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u>AAAAAACAT</u></font>gatctgtatgttactgttaatccactttttattaatcggtcagcaccctt<br>catgattaaggattttattcattcattcattcatttattcattcatttatttattttgagacagagtctccctctgttgcccaggctggagtgcagtgga<br>gtgatctcggctcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggactacaggcatgtaccaccgagccc<br>ggctaatttttgtatttttagtagagaggggatttcaccatattggccaggctggtctcgaactccttaccttgtgatccacccacctcagcctcccaaa<br>gtgctgggattacaggcgtgagccaccgcgtctggccgatt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	55	601	251	NA	intron:NF1:NM:001042492:39/58	
0	chr21	25747018	25747269	2000189	0	+	238468; L1HS132; L1HS78; L1HS16; RIP_L1_chr21_025_01	CCCTCACAGAGTGCTTGGTAA	GGGAAGGTAGGAAAACAGATT	LINE	L1	L1HS	ttattaatgagatattttatgttttatgcatgctatgtttctgaaatcttgttagtattttgtgcttatagcacttatcagcttggactggccacatctc<br>aagtgctggataatcacatgtggctagtggccatcatattgggcagtgaaggtctagagcagacaggcaaggtgaagcggaaagaagaacaaaaatgaag<br>acagaccagggtttaaactccaccctgtgactgaagctcagtgaatgctagctataatttctatgctcctaactggagaaccttcctgagccttggtttt<br>ctcatacataaatgagggataatagtacctcccttaaagagctgttataaagattcattggaaagcccctcacagagtgcttggt<font color="green"><u>AAAGTGTAGATGCTC<br></u></font><font color="red">TATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGA<br>GGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATG<br>TGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGTGTAGATGCTC</u></font>aataaatatcaggcacttttcttttcctcttag<br>tcttcatatctgttttcctaccttccctcttcaaggaaaaagtctgcttattttacctttgtttccccagcctggcccactggtaggtgctcagaaagtc<br>gttgtagaattaatgagtggtcttaagttcctatagtggaatatatccaattgctaatttagattttcctttaataaatcatcctttaaaacactttggc<br>aagacttgcaagttgtggagctgttgacattgtagctggtggtccagtggagagatggtccaaggtctagtttggggattggagggaagagcctgttaag<br>ggaaaggaaatgtggcagcatcacaaacaaaacaaaccagatgagatgaacc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	56	753	486	NA	intergenic	
0	chr2	53479277	53481503	2000190	0	+	L1HS20; RIP_L1_chr2_053_01	AATGGAAGAGCTCTCAAATTCCTTA	GCAACCATTCAAAAATTTACAACAG	LINE	L1	L1HS	ctaaagggaccgagggacctctatctggtactttattaaaaagtcattaccatttccttgcacaattataagaaaaataaaatgcgaagagttagggaag<br>gtgttaaatagagaatttttataaaacttctcttaaaatctttcaacattttttaatgaagccatttagccattaaaaaaaagtgatataaaaaagttgt<br>atccatggttagagttaagacggttttattaaattcctgttcaagacattttaatggtgatctctataaattcttgatggacaccatcaatgagaaactg<br>ttcttactgttcttactagtaggtgatttaaaataaataaataaataaataaaacatttttatgcaaccattcaaaaatttacaacagtt<font color="green"><u>GAAATTATAT<br></u></font><font color="red">CTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAAT<br>CCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTAT<br>ATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGG<br>CTTAGGATTGACTTGGCGATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGG<br>GGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGT<br>GTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAA<br>GCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTG<br>AGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTT<br>GACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGA<br>GGGCATCCCTGTCTTGTGCCAGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTA<br>TTTTGAAATACGTCCCATCAATACCTAATTTAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACC<br>TAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAAT<br>TAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAA<br>GGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCT<br>CAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCT<br>CACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGT<br>AAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACC<br>CAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACATATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCC<br>AACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGG<br>ATGAAATTGGAAACCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCAC<br>ATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACA<br>CATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAA<br>AAAAAAGAAAGAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAATTATAT</u></font>ttaaggaatttgagagctcttccattgacaaatataactattcaattttttgtaataacatga<br>agacattttaaatccaattgaaattttcatatcaagtatttcaaaataatgaggaagccttgatttttagaatacatatattttagaacaaaaccctata<br>gctagcctggacataagtaaaacggcccatccatggatggacagaagtatctgatatttgacaagaaagagcttcttgattcccatctgggggtgcagtc<br>acaaggaacctccatctagcctgccagccccaccaccatcccactggcatcaccttaacctacacccttggctggtgctcttaagacacctagaacatga<br>gatcattcagtagtgcccagacttctt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	61	2302	62	NA	intergenic	
0	chr7	144694162	144694317	2000191	0	+	L1HS32; RIP_L1_chr7_144_01	TCTCTAATCCAGCCTTTCAATTC	TGTTTCTTTTCCTGTGTGTTTCC	LINE	L1	L1HS	ttattatcatttcaggcctagttttaatcacaaatacttgaggacaaattttgtatctagaagtgtagcttttcctttgttcttcatttccagaattgtc<br>ttggctacatttagattcttgttattacacaggatcttttgaattcatttttctaaatacatgaaaagtactattgagattttcctttaattcattaaca<br>ggtaaaatttttatcatgcttttgagtattcccattcactaacttattatatttcatcatttattcatgttcctttaatgtccttcaatacaattttgta<br>tttctttcatatagcccttgcacatttgttgctgctgtcattgaaattatttcctgtttcttttcctgtgtgtttccagttagagtaagtgtt<font color="green"><u>AAGATAC<br></u></font><font color="red">GGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTA<br>ACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAA</font><font color="green"><u>AAGATAC</u></font>attcctaagtgagatttgcaggaaggaattaaagtat<br>cagcctttttgtaacatacacctgttgcattttacctgctacctcacataatggggcatttgcctgtcctgcaaatgcgccacttaccctggatcttttt<br>gcagcattttcgccacctgatccagaggtgcattcagttccgtcctgatggacaccggcttcttctgcaaagaagcttctattttcctggctttgaattg<br>aaaggctggattagagatttcaaagttagtttctatatctaaaaattaataatgattttatcttaatactctcatgtaaaatattactcatttataatta<br>cataatttattatgcagttaatgtggccactaaagtaaatattataaatgatctaa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	57	463	280	NA	intergenic	
0	chr5	8802529	8802530	2000192	0	+	L1HS34; RIP_L1_chr5_008_01	ATGTCTGTCTTGACATTCCTAAGC	AATATGTAGAATGGCACAGGCTTC	LINE	L1	L1HS	tatataaaaattcatcatgacaactttataaaatgcatctcgactaaacagctaacattctgaattctgctttatgcagtgtgtttgggtcatacataga<br>ggccatgaaaacactgagcttggcttaaatacactggtttctcttatctacgtcaccatcagtttaaagtaaaatttggaagaaaaaatatattgaagaa<br>taatataagtaggcactcaaacaatgtgccacacacttccatcttaaaacaaagttaatatgtagaatggcacaggcttcagacattttcatattatctg<br>gtaacacttttctttaactacagcatttaaaatatataggcaggttaatataagaaatatcattccaaagagtaaattttctcttt<font color="green"><u>AAAATTTTTTAATG<br></u></font><font color="red">TGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGT<br>GAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAG<br>CATGGAATGTTCTTCCATTTGTTTGTCTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGA<br>TTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGA<br>TTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATC<br>ATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACA<br>CTATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCGGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGT<br>GGGTTTGTCATAGATAGCTCTTATTATTTTGAAATACGTCCCATCAATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAG<br>GCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTT<br>GCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAAT<br>GTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCCGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGG<br>ATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTG<br>GACTCTTTTTGGTTGGTAAACTATTGATTATTGCCACAATTTCAGAGCCTGTTATTGGTCGATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAG<br>AGTGTATGTGTCGAGGAATGTATCCATTTCTTCTAGATTTTCTAGTTTATTTGCGTAGAGGTGTTTGTGTTTATTGCGGCACTATTCACAATAGCAAAGA<br>CTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTT<br>CATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGT<br>GGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGA<br>TATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAA<br>ACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAGTTTTAAATTTAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTTTTTAATG</u></font>aatccat<br>ttcaaaaattttaaatcaattatctttttcattacataaactcaggcatgtatgaacatattttttagtggaagtagtcaaataattttgatttgaagcc<br>ttttaaggcttaggaatgtcaagacagacatcaaatatttaacagatccatgatgcaaaagcaatttcagaggcttttgaaatagacttttggccttatg<br>ctgaatcatcccatactgaggtgctctttgagttattacatttgcccttcatgtttgtgtttttcacctgctattcgctggtatttcttgacaccacatg<br>cgttcctccctagaggattcttttcagtgttgtgtggtgcctgccctggtttgagcaggtgcatagccaaactcaacat	Other	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	58	2177	284	NA	intergenic	
0	chr7	107616500	107616501	2000193	0	+	L1HS43;1104685588367; RIP_L1_chr7_107_01	TTTATTGCACCTCCTGGTAAAGTAG;TAGAAGACTGGGCCTGGATG 	AGAGCACCATTAAACAACACAAGAT;TACCGCAGGAAGACAATTCC	LINE	L1	L1HS	tgcagatataatgaaattatgcttaataatgtattattaattttatcttatttatatcctcatctaaaatataagctccataaccacagagatttttgac<br>tattttgttttagaacaatgtctggcacacagtaggcactcaaaaatatctgttgaatgaatgagtaaatgaatgaaagagtagaaatgccttgaaatct<br>aatggtattattttaatataggaaaaaagagtctccaagccatctaaccagctaactctggctaatgtacccaatgagctagaagactgggcctggatga<br>atttgtgttctgatcaaggacattgaacactcaagtagggaaaagagcaccattaaacaacacaagatagaggaggggcttttgt<font color="green"><u>TAAATTTTAGTGGAA<br></u></font><font color="red">TAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCAAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCACCATTGCCCAGGCTAGCTTAGGTAAACAAAGCAGCCTGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>TTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACATCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACACAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCCGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCGAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAGGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAAGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACTGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTAGGAGGCCAGCATCATTCTGATACCAAAGCTGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATACATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAGGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAATGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAACACCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGACATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAATTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACATGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAATACTTAGAGTATAATAAAAAAAATAAAAATAAAATAAATAAATAAATAAA</font><font color="green"><u>TAAATTTTAGTGGAA</u></font>atattctactttaccaggaggtgcaataaatc<br>aacacacctatcatttcagaatcatcttaggtagtcatcagaaaggaattgtcttcctgcggtatatgcctgaaggtaataatgtatttcaggcatgtga<br>cctgattgtgtctgcctcttaagtatctctttggttttacaattcaacttcgaagcttacctatagtctaattttattatgctcttctagtatccttatg<br>acattgtccttccttatcttatttcctaggccctaggcttatgtcaccaacgtgagaagctcacattgttgaatgggcaactttgtagcagggactaatg<br>gaaagaaagagacctaggttggaagttaaggtagaacctgttatctacgccca	Other;Venter	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA;NA	58;55	6157;6284	89;217	NA;NA	intron:NRCAM:NM:001037132:20/33	
0	chrX	143234669	143237641	2000194	0	+	L1HS70; AL049588; AF417125; RIP_L1_chrX_143_01	GTTCATTTGAGTGAGGGTACTGTCT	TAAGTCCCAAAAATTGCATCC	LINE	L1	L1HS	gagttctctagtcaatagctttttttttttcctttttcctttttcctttttcttctttttttttttttttttttttttttagcagagagtacagttcttc<br>ttagaaaattattagatcagattagggagatttcaaaatatttatcaccttttaatttctttaaagaaattctaatcagactgaatatcaccaagatcat<br>aggcaagaaggctttgaattaatatgttctacttgcacaggaaaatatatcagttcatttgagtgagggtactgtctcagaccccatgctctattgggca<br>atccacccttattgacagagttgccagatttggcaagtaaacatacaggatgcccagaaacatttaaatttcagataaacaacaaataag<font color="green"><u>AAGAAAAAAA<br></u></font><font color="red">GAGACAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCT<br>CTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACCCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGA<br>CCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACA<br>AGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACC<br>AAAGCCTGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATC<br>CAGCAGCACATCAAAAAGCTTATCCAACATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGC<br>ATATAAACAGAGCCAAAGACAAAAACCACATGATATTCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAA<br>TAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGACAATATCATACTGAATGGGCAAAAACTGGAAGCATTC<br>CCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAA<br>TAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCT<br>CCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGC<br>CAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACT<br>ACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACT<br>GCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAA<br>AAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACCACAAGGCTACAGTAACCA<br>AAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGA<br>CAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCC<br>TTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCA<br>TTCAGGACATAGGCGTGGGCAAGGACTTCACGTCCAAAACACCAAAAGCAATGGCAACCAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAG<br>CTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCC<br>AGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACA<br>TTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAG<br>AATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAA<br>CCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATA<br>AATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGA<br>CTGGATTGAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAA<br>ACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGA<br>AGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCAGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGC<br>AGCACACCAGCATGGCACATGTATACATATGTAACTAACATGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAATCATTTATTA<br>AAACAAAGTTTTTATATTTTTATAATAGTGTTTCACTTGATAAATATTTTTGAATAAATGAATGAGGAAATTA</font><font color="green"><u>AAGAAAAAAA</u></font>aaaaagaagatatgcac<br>tatttggatgcaatttttgggacttaatatgtggtatacacttttattttaaaatatttatttacttgaaattcaactttaacttggtgtcctatatttt<br>atctggcaattctattgctataagatggggcatctgttaaagaattgtatcttagctcatgagaggctgccaagccacctgaattattccttacatcact<br>cccctgaggcacacaatccttattcaccatgggctctacaataagcagtttattcaatacacatctacataaactgatagatcacttactaagtactggg<br>cactggggtcacacggtaaataaggcccactccccaccctggagaagctcactatccagggaaggaggtaaac	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	59	3174	175	NA	intergenic	
0	chr6	32485879	32486631	2000195	0	+	L1HS153; RIP_L1_chr6_032_02	CCAATTCACTTTGTCTCCTAGAAAT	AGTTCACGAAGTTGAAAGCTTATGT	LINE	L1	L1HS	ttgtcaagatatatgatctaatatgcaaatgtatcatcaaattctcaaaaacccatgtttaatttaatttaattttctggataaagtttaagtgttaaat<br>tgtaataataagtggtagcttatgtttaggcattagatgatgaacaattctgaatttcaaggcctatcctgcactgctaaaactcatatcaaagaaaatt<br>gcaaattactacgtatcatgggtcattagaacttttttcagtaaaagcctcaaatgttgctcctcaaaatgccaagcagccatagtaactgactggtaag<br>aataaattaacttagttcaggaagttgaaagcttatgtatcttagttcacgaagttgaaagcttatgtatctatgtagacatt<font color="green"><u>AAAAACAGCTATAGTTT<br></u></font><font color="red">GTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTT<br>GCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGG<br>TGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCT<br>TTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCAT<br>AAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATA<br>TTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAAG<br>GATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTG<br>CACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAATTAAAAAAAA</font><font color="green"><u>AAAAACAGCTATAGTTT</u></font>atcatatgttaaaacaatacatttttatagaga<br>aagctaaaataagatttctaggagacaaagtgaattgggtttttgtgtgtgtgtgtgtgaccttggacatctttctttacttttttgagcctgtattttc<br>tctgctgtgtggtggagacaatcatcctaatgttttccaagctgtgtcatgaccatgtgacataagaagacgtcaaggctcagggacacatgccccacat<br>catccatgacaaatgaaaatgtgatcctggttttcttgtttttaatttcgtgcttcttcctcactcagcctgcttcacaagaacactgtgagggtcaaat<br>gggctacaatcgcactttgaagactgcgcagtgggatataaatgtaagtg	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	931	169	NA	intergenic	
0	chr9	12546850	12549646	2000196	0	-	L1HS163; RIP_L1_chr9_012_01	GGGACAGGGGTTAAGATTTTATTTT	AGTTCTCAACTGTAAAGGCAGTGTC	LINE	L1	L1HS	tacatgctctttcagagcaactgtaaaaagagaaagtagcaggaggcaaagttcctttcctggagtacaaaatggtaatgcacataatcatgcccttccc<br>acttatgttactctatgggatattcagagactggggagctgcagcacctgccaacccttctgcctctgggttctagcctgaactgtgtggtacataaggc<br>cattgcatcaaccccttactcatcagtgttctccacattttcactcagaacatcaattggcataaatagcctgaggactctgaagaactctcttcctttt<br>gggcacttggagactgagttcattaacttctccccaggggaaagggcagttctcaactgtaaaggcagtgtctaattcgaggtt<font color="green"><u>GAAAAGTATTGTATTG<br></u></font><font color="red">ACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGAG<br>GGCATCCCTGTCTTGTGCCGGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTAT<br>TTTGAAATACGTCCCATCAATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATC<br>ATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGAT<br>CATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATT<br>CTCTTTTTTGGTTGTGTCTCTGCCCGGCTTTGGTATCAGTATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAAT<br>AGTTTCAGAAGGAATGGTACCAGTTCCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGA<br>TTATTGCCACAATTTCAGAGCCTGTTATTGGTCGATTCAGAGATTCAACTTCTTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAAC<br>CCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACA<br>CCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGT<br>GAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATC<br>AATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTA<br>CTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACT<br>ATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCACAT<br>ATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATAT<br>GTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCT<br>AGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAA<br>CGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACT<br>CATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAA<br>CAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATG<br>AGATATCATCTCACACCAGTTAGAATGGCAGTCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTT<br>GGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACT<br>GGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCAGCACTATTCACAATAGCAAAGACTTGGAACCAA<br>CCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTG<br>TAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAAC<br>AATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATG<br>CTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTAT<br>AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTGTAAAAAAAAAAATTATAAATAAAACAAAGAAGAATAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAA<br>AAGTATTGTATTG</u></font>taaactaaaaataaaatcttaacccctgtcccgcccgctaccacgtgctgtacagaccccaaagggcccccagaaaaaaaaacttaa<br>aactaagttccttgcggccaaagggaccccacaaaaaaacaaaactgagttggtgacaggatgggaggtcagatatgctttgttatatccccccctttca<br>tggtttacccacaactgaccagcattaatgttaacatagagatcataagaccaacagaacagactctttgttgcaataagatgcccaattacaaacaaga<br>cctaaggccatgccaggcaagggtctggcatgggtacaattaaagaataaactatgctgtaactgtgctacaaagcttttctttttctctaggctaa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	2898	85	NA	intergenic	
0	chr6	70776961	70783010	2000197	0	+	L1HS169; RIP_L1_chr6_070_01	TATTGAGGTGTAACCAGCATACAAT	CCACACGAAAGATATATGAATTGC	LINE	L1	L1HS	ataggtaatagaaataaatgtaaaaaccaaaactgtaaattttttagaagaaaatacagaataaatactttgtgactttaggttaggcataggtttttaa<br>ctatgacactaaaaagtcaatcaatgaaagaaatagttaaaaatatttcttctttgaaagacactgccaggagaataaaaagacaaagcacaccatggga<br>gaaatattttcaaattacatatatgataaaatgacttttatccagaatatataaatagctctaaacaaacaatccaatttttaaaatgagtatgattgta<br>atagcactccacacgaaagatatatgaattgcaaataaactcatgaaaagttgttcaacatgattagtcattagg<font color="green"><u>AAAATCAAAACAAAACAAAGCAAAC<br></u></font><font color="red">GAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGAGAGTTGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCGGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATAGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACACCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCAAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTATGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCACAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGACAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTCACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACAAAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACACAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACAAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAACACATGAAAAAAA</font><font color="green"><u>AAAAACAAAACAAAACAAAGCAAAC</u></font>atggaaatgtttgttattttaattg<br>ttatgatggtttcatggctgtttgcatgtgtcaaaactcatcaaatttgtgtacgttaaatatgtgaaacttattgtatgctggttacacctcaataaag<br>ctgttaaatttttttaaatttaaaaatattatttcaagaataaaataaccaaaccatattctgggagcaagtatttgcaaattatatatctgataaatga<br>cttgtatcaataatacataaagaacttttacaactcacaaataagaaggcaaactaaaaatggaaaaaagatttaaatagatgattcttcaaagaagata<br>tgtgaatgtctaacaagcagaggaaatgatcattaatcattaagaaaatg	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	6289	214	NA	intron:COL19A1:NM:001858:11/51	
0	chr9	10126524	10127713	2000198	0	+	L1HS172; RIP_L1_chr9_010_01	CTAAGATCAGTCACAGGCTTAATGA	CAGGTGCAAGTGGTTTAATTTTC	LINE	L1	L1HS	caaaaaggacagagcaagacattacataacaataaaatattcaattcaacaagaacacctaattatcctaaatacatatgcaatgcaacattggcactca<br>gattcataaaacaagtacttcttggactgcagtaagatttagacagctgcacaagaatagtgggggacttcaacgttccactaacagtgctagatagatc<br>atcaaggcagaaaactaacagaaattttggacttaaactcgacacttgacgaattgttcctaatagatatttacagaatactcaacctaacaaccgcaaa<br>gtacacagtcttttaatctgcactcagaacatactctaagatcagtcacaggcttaatgataaagcaagtctaaataaattcc<font color="green"><u>AAAAAATAGAAATTATA<br></u></font><font color="red">CCAAACAAACTTTTCAGACCAAAGTATGATAAAAATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATT<br>CAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCT<br>TCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAG<br>AATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATT<br>TATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAA<br>TGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACC<br>ATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGACATCCCATTACTGGGTATATACCCAAATGAGTATAAA<br>TCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACT<br>GGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAAC<br>CATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAG<br>GGGAATATCACACTCTGGGGACTGTGGTGGCGTCGGGGGAGGGGGGAGGGATAGCACTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAG<br>CGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAGA<br>AATCATA</u></font>accaagaatatctcaaactgcacaactacatgaaaattaaaccacttgcacctgaatggctttttggtaaacaacaaaattaagggagaaatt<br>gtaaaactctttgaaattaataaaaacagaaacacaacatatcaaaatctatgtgatgcagctaaagcaggattaagaggaaatgtatagtgctaaacac<br>ctacatcaagaacttagaaatataccaaattaataatctaacatcacacctagaggaattagaaaatcaagaccaaactaatcccaaagctagcagaaga<br>aaagaaacaacaaaaatcagagaagcactgaagaaaattgatatgcaaaaattcatagaaaagaccaacaaattcaaaagtgtatttcaa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	1326	111	NA	intron:PTPRD:NM:130392:2/44	
0	chr7	134000548	134000962	2000199	0	+	L1HS180; RIP_L1_chr7_133_01	GGAGTGTAGAATACTGGGGAAAATC	CTTATTTCCCAATGAGCCCTGTA	LINE	L1	L1HS	aggatttcatttatatgaaatacccagaataggcaaatctttagaaacagaaggtagagtggttgttgcctagagggtagggaggatggaagattttgca<br>agtgatttgctgatgggtacagagtttcttgttggggtgataaaaatattctaaaattgattgtagtgagggttgcacaactctgaatatgctaagagcc<br>attgagttgtacactttgtgtgggtgaattgtatgtgaattatatctcattaaagctggaaaaataatcaatggaattgaaaggttaaaggatttgtcat<br>tggcctagaaaacagtggggggtggcaaacatacggaagtgataacaaaactgaaatgcatggctgtggagtgtagaatactggggaaaatc<font color="green"><u>AAAGTGCA<br></u></font><font color="red">CATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTA<br>TCGCAAGAACAAAAAAACAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGG<br>GACTGTGGTGGGGTTGGGGGAGGGGGGAGGGATAGTATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATG<br>TATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAATAAAATAAAATAAAATAAAAATTAATGAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAGTGCA</u></font>gctttgaccactggggcagaagtggacttacagggctcattgggaaataagcaggcattggtcttcaggcagcttcc<br>agtccttcatctaaagggctttttattttattttattttttatttttatttttttaagttggaagtatgaaactgaatgaccttttcttttcttttagag<br>attaatgacattttcttttcttttcttttcttttcttttttagacaaagtctcgctgtgttgcccaggctggaatgcagtggttcgatcttggcccactg<br>caaccttcgcctcctgagttcaagcgattctcatgcctcagccttctgagtagctaggattataggtgtgtaccaccacacctggctaatttttgtaatt<br>ttttagtagagatgg	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	56	507	84	NA	intron:BPGM:NM:001724:2/3	
0	chr6	32784565	32784993	2000200	0	-	L1HS242; RIP_L1_chr6_032_03	AGTTCACGGTCTCTATCTCTCCTTT	AACCTGTCTTTGACTGTTGAGC	LINE	L1	L1HS	agtcccaagtacagattatataagtcatacccttagataacattatttgaggcctatgtatgccataaaataggtctaagtgttttatatgtattacatc<br>atgggtcctctcaacaacctactttgtggttactaaaggattacattgcatgtaaatataaaatactatattaatgaaatcttagttaatctacaaagtt<br>ccacaaaataaaaacagcctaaattgtaatgttgtcaataatcataatttatgagcttgagcacggagtaaatttagattgtgtttttactaccaccaaa<br>tgatgcacatccatttacctagttcacggtctctatctctcctttctcatttatgttaatccaaatagtgatacacacagtgttatgcagc<font color="green"><u>CATAAAAAA<br></u></font><font color="red">TGATGAGTTCATATCCTTTGTAGGGACCTGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGTGTATTCTCA<br>CTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGC<br>ATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATG<br>TACCCTAAAACTTAGAGTGTAATTAAAAAAAAATAAAAAAAATAAAAAAAAAAAAACAACCTAAAAAAAAAAATTACCTTCAGGCGCTATATGTATAAAG<br>TGTATATAAAACATAAATG</font><font color="green"><u>CATAAAAAA</u></font>aaaaagagttaaagaaagaggaaagaaacacaaaaagtggctcaacagtcaaagacaggtttattttggaga<br>ataaacctgagagggcttctggctgatttcagtcaggagccctctctcttacagactaagagtatttaagggtttggggcgaaaggcttgaatgtttctg<br>tgtggagaagaagtttattgtggggttggaatgtctctggttggaggggaggttatcttgggtttggcatctctccggtcagaggggaggttatcttggg<br>gctggtatgtctctggttggagaggggtttatctcagggttggaatgtttctggtcagaggtatcatttgtggtttaaggtcatgctgccattagccatt<br>aggctgatgccctttgggt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	58	576	150	NA	intergenic	
0	chr1	101751578	101751579	2000201	0	-	L1HS308; database26; RIP_L1_chr1_101_01	CCTACTAGGCCCTCTTCTTTTGTAT	GTCTTGTTGTGCCAGACACTTTA	LINE	L1	L1HS	gtcatgagtgagactcatttgaatactatcagtttctacaatttaatttcctctcctacagggttgtaaactagtctggacagagaaacgcaaaggtaca<br>caccctataaagtcccattatccctaaagggaatctcatttaaacactcctctaaaaggacaatcatctcttttgccaatttctaaatctttgaatattt<br>tcttcacaaatctaacgtgaattatgtaatcattccttttcctgtataatggatctatagaaaatgaatgttttaattggcctactaggccctcttcttt<br>tgtatcaagatggtaataaaactttgtcatattctcataaattgtctgaaacattttcttttacagatttgttaaatttcaaactgtttaa<font color="green"><u>GAAAATCTA<br></u></font><font color="red">TTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGT<br>GCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCC<br>CGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGT<br>TCCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTATTGCCACAATTTCAGAGCCTG<br>TTATTGGTCGATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTCGAGGAATGTATCCATTTCTTCTAGATTTTCTAGTTTATT<br>TGCATAGAGGTGTTTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCGGTGGTGATATCCCCTTTATCATTTTTTATTGTGTCTATTTGATTC<br>TTCTCTCTTTTTTTCTTTATTAGTCTTGCTAGCGGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGATTCATTGATTTTTTGAAGGGTTT<br>TTTGTGTCTCTATTTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCTCTTGCTTTTCTAGTTCTTTTAA<br>TTGTGATGTTAGGGTGTCAATTTTGGATCTTTCCTGCTTTCTCTTGTAGGCATTTAGTGCTATAAATTTCCCTCTACACACTGCTTTGAATGTGTCCCAG<br>AGATTCTGGTATGTGGTGTCTTTGTTCTCGTTGGTTTCAAAGAACATCTTTATTTCTGCCTTCATTTCGTTATGTACCCAGTAGTCATTCAGGAGCAGGT<br>TGTTCAGTTTCCATGTAGTTGAGCGGCTTTGAGTGAGATTCTTAATCCTGAGTTCTAGTTTGATTGCACTGTGGTCTGAGGACCTCTTCAAGGAGAACTA<br>CAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTG<br>CCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAA<br>AAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAA<br>AACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGAC<br>AAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCTTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCT<br>TCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCAT<br>TCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGC<br>TTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCA<br>GAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACAT<br>TTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGA<br>ATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAAC<br>CATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAA<br>ATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCTCAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGAC<br>TGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAA<br>CCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAA<br>GGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCA<br>GCGCACCAGCATGGCAGATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAA<br>AAGAGAGACAGAGAGATCACTTGGGTATTCGGCATATTCGATTCCCTCTAAAAGGTTCTGTATCATATTTATTCACTGAGCAAAGTCACCCTGTCAGTTT<br>CAGAATTTGAGGTCAAAGTCATTTTGAGAAATAAAGGCAGATTGTCTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAAAATCTA</u></font>acatgacagctttt<br>aattttacattgaaatatctaactgatattttaatctaaaaggtatgaaagaaattaagtttgtgagcataacataaattttaggaaaaccctatttata<br>tttataagtttgatttgtcagatttacaaaatttgcttaaatgtttagaaagattatttcttaaagctttaattaaaagcacttttacatagtaatgtaa<br>atgttcttaatgaattatacactgaaaaatgtttaaaatggtacactttatgttatgtatattttatgataatagagaaagcacatttacttgtttttta<br>aagtgtctggcacaacaagacatttaaaatgtttcaatatagtataaaaaatttaagggaatttcaagtaactaaat	Other	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	62	3441	455	NA	intergenic	
0	chr1	82898565	82900157	2000202	0	+	L1HS320; RIP_L1_chr1_082_01	GGGATTCAAATGGGAAACAAG	CTCCTTTCCAGTATCTGCTCTTATG	LINE	L1	L1HS	ttgtatagaaaaaaactatataatctaaaaggaataaatgcttcaagaattctaaggaaaagatatttcaaaaatcaacatttattttttcagtggtata<br>tcctggttttattttcttaagagaattacaattatattattatgttggtacaaaagtaatggcggtttttgccattacttttgcaccaacctaatattaa<br>tactactttgtttagcaaagatggaatttacttgctaatgatcttttatcaggtcactcttcacacagtagcatttattgttttgaccctgggaaatagg<br>tgagcttgtattctgtgaagcctctgacctttctcctttccagtatctgctcttatgtttttcaaggctattatcatctttt<font color="green"><u>AAAAAAAATGGTTCATGC<br></u></font><font color="red">ACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGT<br>AACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATC<br>TTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGG<br>ATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCAT<br>TACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTA<br>AAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAA<br>TATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGA<br>AGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCA<br>GTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAGATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAG<br>TTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGA<br>GTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCAGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGCCCAACAATG<br>ATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAAT<br>TGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACA<br>CAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTG<br>GGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAATAA<br>AATAAAAAAAAAAAAATAAAAAAAAAAGAATTGTAAAAAAAAAAATTATAAATAAAACAAAGAAGAATATGTGAGAGGAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAA<br>ATGGTTCATGC</u></font>taaggagctaataaaaaaaaaaaatttctctctccacaaaaaagaagacaacttgtttcccatttgaatcccagttctgccacttgtta<br>agtatatgatcttggtcaagttatataacctgttggtttctgtgtgtgtgtgtttttttttttctcatttgtaaagtgaggacaataggagagttgtggg<br>gtgtttagagaattaaacgactattgtattagagggaaggggagaaagggacagaaagtgaagaaaagaagggagagaggaacaagtcaggaaggaaaac<br>cagatcagctgatgaagacaactcagcacaaaaggcagacgtgataatattggaatttctggctttaataagaagctactagtatagaggacc	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	1748	140	NA	intergenic	
0	chr2	126225984	126227106	2000203	0	+	L1HS335; RIP_L1_chr2_126_01	CATGCATCTCTGAACTACTGACTTG	ATAAAAACCTGTTTAGGCCAAGG	LINE	L1	L1HS	ttcttgtaatacaaaagaaaataaacaaaaatatttaagcagatctgtctatctatctatacatcaatccatccatatatatatctgcttaaatatttct<br>gtttatatgtatatctatcacctatctacctatctatatacatatatatgaagagagagagagaaagacagagatacttctcagatatttatttatttgt<br>catctgttgtctcttactgactggcatccattttcaaaatggacctccacaaaagtcaaaattcagtacattggccttgcaaaatattgtgatacaaagc<br>cagtcctcaaggaatggggcataactgcccactgggaggcacagggcttcaccatgcatctctgaactactgacttgggtcagcctcatg<font color="green"><u>AAATATAAAA<br></u></font><font color="red">GGAAATCTTTCAGTTGGTTTAGCCCCCAGGAAGAGAGCTTCAATGCCAAAAAGCTTCTCCTTCTGTGCCTGCTTTGAGTTTCCTCTTTCCAGTGAGTCTA<br>AGAGGCTGGGGAGTGGAGTTTGGGTGATACTTCCCGGGACCTGCGATAAGTCCCTCCCTTGATCTGGGTCTCCACTTCCTCATCTTTAGTAGACTTATAA<br>GAAATGGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTA<br>TAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGT<br>TTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATGTCTCTGTTTTGGTACCA<br>GTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACACATGC<br>ACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATAT<br>ACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCA<br>AGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTG<br>TGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATAC<br>ATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAGGGGGGATA<br>AAATAATCTCTAAAATTTCCTTC</font><font color="green"><u>AAATATAAAA</u></font>ttttataattaaaaaagtctactatgctgcccatgcggaaatgttatttgttgcctgaaaccaatcg<br>tgttgccttggcctaaacaggtttttatttccaggaatatcctcaccatgacaaccatcgatttaaatggggctgatgggctgtttttttaaagcccagt<br>gattttaggacttcaaaaattaggtgataagctaaagtaaacatcgaccactgcctttgttctttaggacccctggtattgtagtagtgtttgtaaaagt<br>ctgcttgatgtctttaaaaaaaattcaatccctttttcttctagcactactgatatttttctccaactagagaaaaataactttatatccaaagttacat<br>catgagaatgccatctttgctgg	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	1276	395	NA	intergenic	
0	chr3	41793081	41796497	2000204	0	+	L1HS375; RIP_L1_chr3_041_01	TGTGGTACAGTCACACTACAAAG	GATAGCATACACCATCATGCACT	LINE	L1	L1HS	agtttctaattcaagcatcttttcccaagtttactgaccattccaatttcttcttctataaagtaattcttcacattctatgcccattttgtcttaactt<br>ttccttttcattattaggctatttttcatatcctggatactaatcattaagaaaagtttccctacaacaagatcacaaagacagttatgtaaattttctt<br>ttaagtttttttcaagttttccttttcatattttagtcttatgtcagaaaaaaaatctaacactcaaatgtcaacaaaaaaactaattgaataaaaatgt<br>ggtacagtcacactacaaagtactaatttcaaaaaagatgaacatttctataaacagatacaaaatgatctctgaggtaagttt<font color="green"><u>AAAAAGGTACAAAATG<br></u></font><font color="red">AAATACGTCCCATCAATACCTAATTTATTGAAAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGT<br>GGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATG<br>GTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCT<br>TTTTTGGTTGTGTCTCTGCCAGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTT<br>TCAGAAGGAATGGTACCAGTTCCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTAT<br>TGCCACAATTTCAGAGCCTGTTATTGGTCTATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTCGAGGAATGTATCCATTTCT<br>TCTAGATTTTCTAGTTTATTTGCGTAGAGGGGTTTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATTGGTGGTGATATCCCCTTTATCATTTT<br>TTATTGTGTCTATTTGATTCTTCTCTCTTTTTTTCTTTATTAGTCTTGCTAGTGGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGATTC<br>ATTGATTTTTTGAAGGGTTTTTTGTGTCTCTATTTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCTCT<br>TGCTTTTCTAGTTCTTTTAATTGTGATGTTAGGGTGTCAATTTTGGATCCTTCCTGCTTTCTCTTGTAGGCATTTAGTGCTATAAATTTCCCTCTACACA<br>CTGCTTTGAATGCGTCCCAGAGATTCTGGTATGTGGTGTCTTTGTTCTCGTTGGTTTCAAAGAACATCTTTATTTCTGCCTTCATTTCGTTATGTACCCA<br>GTAGTCATTCAGGAGCAGGTTGTTCAGTTTCCATGTAGTTGAGCGGCTTTGAGTGAGATTCTTAATCCTGAGTTCTAGTTTGATTGCACTGTGGTCTGAG<br>AGATAGTTTGTTATAATTTCTGTTCTTTTACATTTGCTGAGGAGAGCTTTACTTCCAACTACATGGTCAATTTAAACCCACAGCCAATATCATACTGAAT<br>GGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGG<br>CAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCC<br>CACTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCGCAAGCATTCTTATACACC<br>AACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGA<br>AGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAA<br>TATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACT<br>TTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTAT<br>ACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATAT<br>CTACAACTATCTGATTTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGT<br>AGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAG<br>AAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATG<br>GGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCA<br>TCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCACAAAGTGGGCGAAGGACATGAACA<br>GACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAG<br>ATATCATCTCACACCAGTTAGAATGGCAATCATTCAAAAGTCAGGATACACAGGTGCTGGAGAGGATGTGGAGAGATAGGGACACTTTTACACTGTTGGT<br>GGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGG<br>TATATACCCAAAGGATTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCC<br>AAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAG<br>GGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAAT<br>GAGATCACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGTGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTA<br>GATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAAT<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGGTACAAAATG</u></font>ggccagatgccgtggctcacatctgcaatttccaacactttggaaacactttgggaggctgaggcagg<br>tggatcacctgagcccaagagctcgatagcagcctgggcagcatggcgaaacccagtctctaccgaaaatacaaaaaaaaagccgagtgtggtggcacac<br>acctgtggtcccagccaccctggaaggtggaaagacagcttgagcccaggaggcagcggtttcagtgagccaagatcacaccactgtactccagcctcgg<br>agaaagagaccccaccctgggtcaaaaattaaataaagtgcatgatggtgtatgctatcttttatcttttatattaaaatataaaaatttatattaaaaa<br>tataaaagatgttatc	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	3862	430	NA	intron:ULK4:NM:017886:21/37	
0	chr3	106788698	106793718	2000205	0	-	L1HS378; RIP_L1_chr3_106_02	CTCCCCTTTTTGCCTTACTTCT	CTTACTTGCAATAGCCCATTCAC	LINE	L1	L1HS	tttttcttttttttctgagacagagtctcgctctgtctcccaggctggagtccagtggcatgatcttggctcactgcaagctccgcctcccgggttgaca<br>ccattctcctgcctcagcctccccagtagctgggaccacaggcgcccgccaccacgcccggctaattttttgtatttttagtagagacggggtttcaccg<br>tgttagccaggatggtctcgatctcctgagctcgtgatccgcccacttcggcctcctaaagttctgggattacaggcttgagccaccgcgcccagccatg<br>aaccagatatttctaagtataggtgcatggaggtcattagaaaataaaataacgatcacaactttattcagctgaattttagtctt<font color="green"><u>AAAGAGAAGTATTT<br></u></font><font color="red">TTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGA<br>TAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTT<br>GGTTGTGTCTCTGCCCGGCTTTGGTGTCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGA<br>AGGAATGGTACCAGTTCCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTATTGCCA<br>CAATTTCAGAGCCTGTTATTGGTCTATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTCGAGGAATGTATCCATTTCTTCTAG<br>ATTTTCTAGTTTATTTGCGTAGAGGTGTTTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCGGTGGTGATATCCCCTTTATCATTTTTTATT<br>GTGTCTATTTGATTCTTCTCTCTTTTTTTCTTTATTAGTCTTGCTAGCGGTCTATCAATTTTGTTGATGCTTTCAAAAAACCAGCTCCTGGATTCATTGA<br>TTTTTTGAAGGGTTTTTTGTGTCTCTATTTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGTTCTTGCTT<br>TTCTAGTTCTTTTAATTGTGATGTTAGGGTGTCAATTTTGGATCTTTCCTGCTTTCTCTTGTGGGCATTTAGTGCTATAAATTTCCCTCTACACACTGCT<br>TTGAATGCGTCCCAGAGATTCTGGTATGTGGTGTCTTTGTTCTCGTTGGTTTCAAAGAACATCTTTATTTCTGCCTTCATTTCGTTATGTACCCAGTAGT<br>CATTCAGGAGCAGGTTGTTCAGTTTCCATGTAGTTGAGCGGCTTTGAGTGAGATTCTTAATCCTGAGTTCTAGTTTGATTGCACTGTGGTCTGAGAGACA<br>GTTTGTTATAATTTCTGTTCTTTTACATTTGCTGAGGAGAGCTTTACTTCCAACTATGTGGTCAATTTTGGAATAGGTGTGGTGTGGTGCTGAAAAAAAT<br>GTATATTCTGTTGATTTGGGGTGGAGAGTTCTGTAGATGTCTATTAGGTCTGCTTGGTGCAGAGCTGAGTTCAATTCCTGGGTATCCTTGTTGACTTTCT<br>GTCTCATTGATCTGTCTAATGTTGACAGTGGGGTGTTAAAGTCTCCCATTATTAATGTGTGGGAGTCTAAGTCTCTTTGTAGGTCACTCAGGACTTGCTT<br>TATGAATCTGGGTGCTCCTGTATTGGGTGCATAAATATTTAGGATAGTTAGCTCCTCTTGTTGAATTGATCCCTTTACCATTATGTAATGGCCTTCTTTG<br>TCTCTTTTGATCTTTGTTGGTTTAAAGTCTGTTTTATCAGAGACTAGGATTGCAACCCCTGCCTTTTTTTGTTTTCCATTTGCTTGGTAGATCTTCCTCC<br>ATCCTTTTATTTTGAGCCTATGTGTGTCTCTGCACGTGAGATGGGTTTCCTGAATACAGCACACTGATGGGTCTTGACTCTTTATCCAACTTGCCAGTCT<br>GTGTCTTTTAATTGCAGAATTTAGTCCATTTATATTTAAAGTTAATATTGTTATGTGTGAATTTGATCCTGTCATTATGATGTTAGCTGGTGATTTTGCT<br>CATTAGTTGATGCAGTTTCTTCCTAGTCTCGATGGTCTTTACATTTTGGCATGATTTTGCAGCGGCTGGTACCGGTTGTTCCTTTCCATGTTTAGCGCTT<br>CCTTCAGGAGCTCTTTTAGGGCAGGCCTGGTGGTGACAAAATCTCTCAGCGTTTGCTTGTCTATAAAGTATTTTATTTCTCCTTCACTTATGAAGCTTAG<br>TTTGGCTGGATATGAAATTCTGGGTTGAAAATTCTTTTCTTTAAGAATGTTGAATATTGGCCCCCACTCTCTTCTGGCTTGTAGGGTTTCTGCCGAGAGA<br>TCCGCTGTTAGTCTGATGGGCTTTCCTTTGAGGGTAACCCGACCTTTCTCTCTGGCTGCCCTTAACATTTTTTCCTTCATTTCAACTTTGGTGAATCTGA<br>CAATTATGTGTCTTGGAGTTGCTCTTCTCGAGGAGTATCTTTGTGGCGTTCTCTGTATTTCCTGAATCTGAACGTTGGCCTGCCTTGCTAGATTGGGGAA<br>GTTCTCCTGGATAATATCCTGCAGAGTGTTTTCCAACTTGGTTCCATTCTCCACATCACTTTCAGGTACACCAATCAGACGTAGATTTGGTCTTTTCACA<br>TAGTCCCATATTTCTTGGAGGCTTTGCTCATTTCTTTTTATTCTTTTTTCTCTAAACTTCCCTTCTCGCTTCATTTCATTCATTTCATCTTCCATTGCTG<br>ATACCCTTTCTTCCAGTTGATCGCATCGGCTCCTGAAGCTTCTGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGAT<br>GCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAATCTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCT<br>ATGACAAACCCATAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCT<br>ATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTT<br>GCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCA<br>ATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAA<br>ATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGA<br>ACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAAT<br>GACTTTCTTCACAGAATTGGAAACAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCT<br>GGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACA<br>GAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAA<br>ATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGTATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTA<br>AACATTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAG<br>CAATGGCAACAAAAGTCAAAATTGACAAATGGGTTCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTAC<br>AACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAAC<br>CCCATCAAAAAGTGGGCGAAAGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCA<br>TCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAGCAGGTGCTGGAGAGGATG<br>TGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAA<br>ATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCAC<br>TATTCACAATAGCAAAGACTTGGAACCAAGCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGC<br>CATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGC<br>ATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGG<br>AGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAAT<br>GTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAATGGCTTACATGAATTTCTCCTTTTTATCTTTAA<br>AAGCTTCCCCCTTTCCCCAACCCCTTTGGATGTGTCTATGGTTCACCATAGCATGCATATGTCCCAGATTGCAATCCCTTGCTATTCCTGAATAAACTAC<br>TTTTTGGGAAAAAAAAAAAAA</font><font color="green"><u>AAAGAGAAGTATTT</u></font>ggataattacagggaaaaacaaaggcattttaggtgaatgggctattgcaagtaagtcaacaacg<br>ttgaaataaaaaatattttttcatactgtggaatacagactcttcagaaagtacttttctgagcttcacattccttatttacatgaatagattgtgtgtg<br>tgtttataggtgtgcattacactttaaaatctaaatacaggctgagcacggtggctcacgcccgtaatcccagcactttgggaggctgaggcaggtggat<br>tacctgaggtcaggagttcgagaccagcctggccaacatgtgaaaccctgtttctattaaaaatacaaagaaacaaacaaaaaaattagcccggtgcggg<br>tgtcctggtgcatgcctgtaa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	5569	646	NA	intergenic	
0	chr4	20770101	20776195	2000206	0	+	L1HS410; RIP_L1_chr4_020_01;AC226616;AC212263	GCTAAGCAATGGAGGAAAATATCG;NA;NA	TGTACATGGTGTGAGGTATGAA;NA;NA	LINE	L1	L1HS	tataatagcttcataaattgataacttagtaaagttatcaattttccccaaattgatttacagagtcaataaaatccaaaccaaactcacagcgggcatt<br>gtttatttggtagaaatcaacaagctgatttgaaattaatgtggaaatccaatgaatctagactagccagggaaattttaaaagaaaagaaagaacaaag<br>ttggaggaataacagtgccagaattcaagactgattataaagctacaattattaatatagtgtgtgtcattggtgtaataaaagacaagttaatcaatgg<br>aatagaaatggacccatgaatatgtagaatattgatttttaataatgctataggctaagcaatggaggaaaatatcgtattttt<font color="green"><u>AGAAAATTATACTAAA<br></u></font><font color="red">GATATGTTTGAGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTC<br>CATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATT<br>GCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATA<br>TTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAG<br>CACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGC<br>TCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAA<br>CCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCCGGAGATCTGAGAACGGGCAGACTGCCTCCTCA<br>AGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCT<br>GCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGT<br>AGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCA<br>GCAACAGAACAAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCA<br>AAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAAC<br>CAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGTGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATG<br>AAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTG<br>GTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGT<br>TCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAA<br>AAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAA<br>GAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAA<br>ATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGG<br>TACCAGCCGCTGCAAAACCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGA<br>CAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGA<br>CCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAA<br>CAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGG<br>GATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGA<br>CTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTG<br>AACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATT<br>CCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACT<br>AGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCA<br>GAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCAC<br>TAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAG<br>CAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAA<br>AGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCA<br>CCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACAC<br>ATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAA<br>AAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAG<br>AGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTT<br>GATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCT<br>GGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAG<br>AAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAACTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGA<br>CAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTC<br>AACATAGTTTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAG<br>ACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGT<br>ACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATAC<br>CTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACA<br>TTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGAC<br>TTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCTCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGA<br>GGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAA<br>CAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATG<br>GTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAAC<br>GTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAA<br>TGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAC<br>ATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCC<br>ATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCA<br>GAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGG<br>AGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATA<br>CCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTAT<br>TCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCAT<br>AAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATA<br>TTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGG<br>GATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTG<br>CACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAATCATATGTTTGAAAGCATCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAA<br>ATTATACTAAA</u></font>aattaggtattcaaatgaaaattatttaattcatacctcacaccatgtacaaaaattaactcaaaatgcatcatagatctaaatataaa<br>atgatacaacttctagaaaacaaggaaaaaaatcttagtactcttggattaggcaaaggttttctagatatgagaccaaaaacataatccataaaaaaat<br>taagtgggactccattaaatttgaaaattctggtcttttaaagacactgacaggaaaatatagttatatagctaatatgggggagggagtggtatggatt<br>gaatgtttgtgtcctctctaaaattcatgttaaaactaaatttccaatgcagcagcattaagaggtgcggcctttaagagatgacttggccatgc	UCSC;UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA;NA	57;NA;NA	6211;NA;NA	100;NA;NA	NA;NA;NA	intron:KCNIP4:NM:001035004:1/8;intron:KCNIP4:NM:001035004:1/8;intron:KCNIP4:NM:001035004:1/8	
0	chr4	79488159	79494219	2000207	0	+	L1HS413; RIP_L1_chr4_079_01;AC208184	TCATGAGCATCACTCTTACCATGT;NA	ACTCAGCTGACTTGCCATAAATGT;NA	LINE	L1	L1HS	tgttcctgtgtgcctctgtgctgttacatgctcttcccttctaacaagggtgtcctcaactggcaccatctgcaaacatcaaataagcactcaagttcaa<br>gttcctcttattcactttggataaaatattctctgatccttctttgacacctgttgcatttgggatgtgtatgtgtgtgtgtgtatgtgtgtgcgtgtgt<br>gtgtgtgttttttttttttttttttggtcatcccttcctaagcatcttgagagaaggattgaagtctgattcaatcctatattaccttccacagtgcctc<br>atactcagctgacttgccataaatgttaattgaagtgaactgttttcttttgtggagctaaactgagtaaaacataaattggatac<font color="green"><u>AAAGCTTCAAGATA<br></u></font><font color="red">GGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACTGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGACCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACAGCAGGGTATTCCAACAGACCTGCATCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAACACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGGAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAGTCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTAGTCAGGAAACCCATCTCATGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACAAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACAGAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGTAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCTCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCAGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAACAAAAAAATTAAAAAAAAAATAAAATAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGCTTCAAGATA</u></font>catggtaagagtgatgctcatgac<br>gtgttgttggcagtgcaagctggcaccaaaacctagagctttgcttttacatttgacactgccactcgccacctccccttaccctccccacttcaagctg<br>tttcctcggctcctacggcagccttcccaacacattggtgagtttgtctacactgggtagaaatcactgccctataacatgaaggtcattctgttgtcgt<br>gttttatttggttagttttttaagagtaaaacaatagccacagacactgaagaaagaagtctcatttggttggttggttttgttttgttttgtagctttt<br>gtactaattcaaagcctctaaagagaatacatgatttgtaacagcttacgggtgggctgagc	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	6199;NA	127;NA	NA;NA	intron:FRAS1:NM:025074:20/74;intron:FRAS1:NM:025074:20/74	
0	chr5	96892180	96892181	2000208	0	+	L1HS437; RIP_L1_chr5_096_01	ATCTATCATTTATCTGCCCCGTCT	ACAAGGATTAGCAGGAAGTCTGTT	LINE	L1	L1HS	ttttttatcaacaaaatttacacacatagaaaaatttagaaaataaagaaaataaaagctactgatgctattgatgatacaaatgcacatacatttatgt<br>gaattctgtaatctatgtataacatgtatgtgatcacattatctttattattttgtgatatgctttttgatacttagcaatatagtgtggatatctatca<br>tttatctgccccgtctttcaaatgtatatacaagcattatttttaataaatacatagtggtattctataattgatttaatctatcatatactattgactt<br>tcatattgcttccaaattttacttttacatgtaattatgcaattagtctatacaaatattttgccattttttactgatttttt<font color="green"><u>AAAAAATACATTTTTAG<br></u></font><font color="red">CTATTGTGAATAGTGCCGCAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATACTCATTTGGGTATATACCCAGTAATGGGATGGCTGG<br>GTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTT<br>CCTATTTCTCCGCATCCTCTCCGGCACCTGTTGTTTCCTGACTTTTGAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTT<br>GCATTTCTCTGATGGCCAGTGATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCA<br>CTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCAAAAATT<br>TTCTCCCATGTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTGAGTTTAATTAGATCCCATTTGTCAATTTTGTCTT<br>TTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTT<br>AGGTCTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTT<br>TCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTG<br>AGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAG<br>TGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGGC<br>ATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGT<br>TCTTCCATTTGTTTGTCTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTA<br>TTTTGTTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACA<br>TTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTG<br>CAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAA<br>TAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCAGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCA<br>TAGATAGCTCTTATTATTTTGAGATATGTCCCATCAATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTG<br>CATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGG<br>GATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAG<br>GATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCCGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTT<br>TTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGC<br>ACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAGAATGTGGCACATAT<br>ACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCA<br>AGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTG<br>TGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATAC<br>ATATGTAACTAACCTGCACAATGTGCACATGTACCCTATAACTTAGAGTATAATAAAAAAAAAAAAAAGAAAGAAAAAAAA</font><font color="green"><u>AAAAAATACATTTTTAG</u></font>aa<br>tccataaattcataccaattaacagacttcctgctaatccttgttgcatataatagtaatgggtaattcccttaatcatattcaatttactaggcagatg<br>atatctttaatgtttatttttattaatattgatatttaaaatttttatttttaatatagtttgatttaatatctttgattttattatagttattacatat<br>ttgtatattaatatttcttttgtaaatggcctaatttttaatttctcacttgtatacaaggagataattcacatttttattatttataattgttattttg<br>ttgactgcatgatatcatatatatttagcatgatgaatataaaagagactttttctgttgcatctatattttggctacagc	Other	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	2954	256	NA	intergenic	
0	chr5	151456437	151456556	2000209	0	+	L1HS447; L1HS448; RIP_L1_chr5_151_02	GTACATCTCTTTGGACACTTCCACT	GTTTAAGTCCAACATCCTGTTCTG	LINE	L1	L1HS	actaaaagaggcttagtttgggagagggagaaaatgacatcaatccaagctggaggagcaagcaaggactagatcatgagttggatattcattttgttta<br>agtccaacatcctgttctgttgctccttttgtcaattagagcatgaagaagccacagattaattctcaaactttcatatacatcggtctctcccagggag<br>cttataaaagtgcaatacttgctcagagcttctgacacagtagccataataagcacaggttctttctgttggaagtcatagaaattcaactaaaatcaac<br>ttaagcaaagccaaaacagaagtaatggcttctctattttggaatcaaagaggtggtgttagcttcaggcatgactccatctagcagtt<font color="green"><u>AAAATAATATC<br></u></font><font color="red">CCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTT<br>AGAGTATAATAAAAAAAAAA</font><font color="green"><u>AAAATAATATCA</u></font>attaaagctccctctctcttttctaaaaagttgttcttctaatttatttattggcttcatccttagga<br>atgctttctccacatggtagtaaaaataggcatcagaactccaggcttgtattatcctcataggtagtgatcccagaggaaagggtgctatgttctcttt<br>ttcatttccacgttaacccctctaatggatttggattggccctgctcgggtcaaattcccacagtggaagtgtccaaagagatgtacatcatctctttgg<br>acactctctttagtttgctgcctaagcagagaaagcagggtcacttgagtgatagaatcaccagattcacttggcttggggaaaggatagtttccataaa<br>gaagaaatgttcaaacaggaa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	59	691	560	NA	intergenic	
0	chr4	88702925	88705336	2000210	0	+	L1HS480; 238204; RIP_L1_chr4_088_02	AGAGGTAACCACTACCTTGCAACT	GCCTCATGACAGGAGAAGAGATAAA	LINE	L1	L1HS	aggttgtggatcagtagattagtttatagtttgctggtgggagtgttcaaccactttagcaaggaatttggcattatctcttaaagctggagactcatat<br>atctatgatgagtaattctacactgggcatatactcaaaagaaattattgcaggtgtacattaggagacatctacaagaatgtccatggaagcatttctg<br>tttgaaatagcaaaagctttgaaaaaaacttacatgcctcatgacaggagaagagataaattgtggtaccttcatacaataaaatatcttactggaaaga<br>aaatgaatataaacgatgctagaaatataatttgaataaaaattaagctctcaaaaggttacatgtactacaaaacacatttt<font color="green"><u>AAAAAGTTACAAACAAC<br></u></font><font color="red">ATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTA<br>TTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAA<br>TATTTTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTC<br>CCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAA<br>TAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCT<br>CCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGC<br>CAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACT<br>ACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACT<br>GCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAA<br>AAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCA<br>AAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGA<br>CAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCC<br>TTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCA<br>TTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAG<br>CTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCC<br>AGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACA<br>TTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAG<br>AATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAA<br>CCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATA<br>AATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGA<br>CTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAA<br>ACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGA<br>AGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTG<br>CAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAGAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAAAGTTACAAACAAC</u></font>taaaactacccaatatgctttttaagaaatatttatattatggtaaaactgtagttctaaaaagcaaaggg<br>aagactaatacaagttgcaaggtagtggttacctctggcggagggaggcagggtatgagatagggaagataacattggaggatgttacaaattatgaatg<br>tttccattgtcatgcagggtggtgtatacacaggtatttattgcataacaaacaaattgttcaacaaacaaataggtaaataaataaataaataaaaaga<br>aggccatgcctgaaccaaggatgagaccatgtcatgaaccaagttttatgattaattaaattttaggcatccagcattagaaacacaactactggatttt<br>tgattgggcaga	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	2701	272	NA	intergenic	
0	chr13	85238148	85238149	2000211	0	-	L1HS513; RIP_L1_chr13_085_01	CCAAACTTGAGCCTCCTGTAATC	CCTTGAAATAAGCAGGAAGAAGC	LINE	L1	L1HS	atgttactttcttctctagccctgataaaaatataaaaggactgattcctatataatattaatttatagtgcatactatccctttatatgaaaagaatgt<br>gaattaaaagtaatatttaaagaaagaaggttattgtgaataaactaaaaacaaaaaggcatatactattttgaatgtggtaagattcaatattttgttt<br>ccttacaatcacgagatcaaagaagctaagctccttgctgggaacttccctgtatatgctaaggaaactcttggtaacttttggtatagaataatcttga<br>aagccccagggctattattattctaaattgagagaaaataaaaatatggcatatattgagtgggccccaaacttgagcctcctgtaatccttgacacg<font color="green"><u>AA<br></u></font><font color="red">TGTGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTCGAAGTCAGTGTGGCGATTCCTC<br>AGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACAC<br>GTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACAC<br>CATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAA<br>CAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGT<br>GGAGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATAT<br>GTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAATTAAAAAAAAAAAAAA</font><font color="green"><u>AA</u></font>gcttcttgatacacagctaggtcg<br>ttagttattatttattgaattcactgaaccaaggtttaggattactagccaggcttcttcctgcttatttcaaggatatgcctgtaccaaattgttaaat<br>cctcattccaatcccaaacttatacatatcccagaaatcttattaccatcttatacagtatgtgccttttaaaggcttggtattaggttagagcacctta<br>actctcatttctcttttgcttttaagtttataatgatagaaaatttcctcaactacttcattctacaaatctaattggtaaaatgaagtgtttaaggcac<br>tgaatcaaatttttctttttcatatgttttccttttactgcgaagtcatacctgtagaatgaagactgggcctt	Other	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	61	809	142	NA	intergenic	
0	chr16	18740046	18745877	2000212	0	-	L1HS526; RIP_L1_chr16_018_01	ACCCTCCAAGGTAACTGAATCTTA	ATGCCCATGCTTGTTAGCTACTAC	LINE	L1	L1HS	tatatttatacctatatatatatattttggagacagagtctcgctttgttgcccaggttggagtgcagtggcactatctcacctcactgcaacctctgcc<br>tctcgggttcaagcgattctcctgcctcagcctctgaagtagctgggactacaggcacgcaccaccatgtccagctaatttttgtatttttatagagacg<br>gggtttcaccatgctggccaggctggtctcaaactcctgacctcaggtgatctgcccaccttggcctcccaaaacactgggattgcaggcttgagccacc<br>gcacccggcctatattttttatttcttaccctccaaggtaactgaatcttatagtaacaggtatattttgaaccaggagt<font color="green"><u>AGAAACATACTAAATATCTC<br></u></font><font color="red">CGAGTCAAAGAAAGGGGTGACGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTACGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAG<br>ACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCT<br>GGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCC<br>TGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGA<br>GAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGG<br>AGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACC<br>AGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAA<br>CTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCT<br>GAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAA<br>TGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGA<br>GCCGATGCAATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAA<br>TGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAA<br>AACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCT<br>CGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCT<br>CAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAAT<br>TTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATGGACAAGCAAATGCTGAGAGATTTTGTCACCA<br>CCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATC<br>GAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATA<br>AATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCA<br>GAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAAC<br>AGACTTCAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTAT<br>GCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCC<br>CACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAG<br>AACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGC<br>AAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTA<br>CATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACAC<br>CACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGAC<br>ACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGG<br>AAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAA<br>GAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTAC<br>AAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTC<br>TGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCA<br>GAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATT<br>CTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAA<br>ACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGT<br>AATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAA<br>ACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGG<br>AAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGA<br>GAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCATCTCAGCG<br>CAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAA<br>CAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAA<br>GGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATG<br>GCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATAT<br>GGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTAC<br>AGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTG<br>ATCTTTGACAAACCTGAGAAAAACAAGAAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAAC<br>TGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGACTTAAATGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGG<br>CATTACCATTCAGGACATAGGTGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAACCAAAATTGACAAATGGGATCTAATTAAA<br>CTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGC<br>TAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAA<br>AGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACA<br>CCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAAC<br>TAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAA<br>GGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACA<br>ATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGA<br>AATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGG<br>ACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGCGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTA<br>GTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTGAGAGTATAATAAAAAAAAAAAA<br>AAGAAAAAAAAAAGAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAACATACTAAATATCTC</u></font>aggtttttaatgaatttgataattactgtgccttaatacattaaggaa<br>attttgatgattagaaaaactttgaatactgaatttgttttgtgaaatgtatataagtagttctattttgtttattagtagtagctaacaagcatgggca<br>tttcttatgttgtatagataatggaattttgtgatgcctaaggcagcagaatatttttctgaactattatagtgactggatattgaaagctatgtacata<br>atccttctacttatttttttacataagagaaacttgccttaatgaaagttatgtgtatctttatattgtctgtcctttatacttcatgtactcagtagta<br>actgacatttttgtttttgtaaattaatagca	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	6076	223	NA	intron:SMG1:NM:015092:55/63	
0	chr12	60581313	60581484	2000213	0	-	L1HS5; 238698; RIP_L1_chr12_060_01	TCAACTACAAAGTTGAAGAATAGG	GTTTCCATCAACAAGATCATGTCAAG	LINE	L1	L1HS	gtatatctatttgtattgtaataaccagtaactggcatggtatacaatcaaaaattgcctcccgatgttgtgtgagacagataattaatgtaacaaacct<br>gtgtggagccaaatgtttgattagtgtggtgccttcaattcaactcctatagtacttcttctgatcttacctgaaaaaaataatttttacaggccaagta<br>ctaatgctttcttcaaatggcttctggagaaaataagtttttgttccagatattgtttatgttgtgtgtctttttttttgttatagaagtaccatatatt<br>tgtttcatcagagttggaaagtaacaatataatttatagaatgtttttcaactacaaagttgaagaataggattaaaattattgtt<font color="green"><u>AAAAAGTGAAATTG<br></u></font><font color="red">GTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTA<br>ACTAACCTGCACAATATGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGTGAAATTG</u></font>aagagttaaaactt<br>ggaaagcaaattaagtttgacattagaataattattcttagaaaatatacaaaacactattgggaaaagattattagtcaagtgaacatatgtacaaata<br>catttcctaaagattgttataaagacatatatttggtaaagttcatggaaaagtgtctagcttcttaaaagagattccaacatacctgtaataaagtaga<br>ccaaaacaggtaatcacagacacagctcaaaactccacatggattggccaatttaatgaaaaaaacttgacatgatcttgttgatggaaacaaagaaatg<br>ataatactgtctgcttacttgaaaaattattcactgttcagaaattaatagataccaatgaaagtcataggt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	58	546	376	NA	intron:FAM19A2:NM:178539:1/5	
0	chr2	159857373	159859894	2000214	0	-	L1HS21; 237829; RIP_L1_chr2_159_01	GTGTTGGCATATTTCTATTCG	TAAAGGCTGAACTTTGCATTG	LINE	L1	L1HS	aggtcaggagtttgagaccagcctggacagcatggtgaaaccttgtctctataaaaaaaaatacaaaaatcagccaggcatggtggcgtgcgcttgtagt<br>cccagctactcaggagactgaggtgggaggatggcttgagtccaggaggtcgaggctgcagtgagctgtgatcacgccattgcactctagcatggacaac<br>agagtgagaccctgcttcagaaaaaataaaatgcaaataaaatgaaaagaaagtaaccaaattatatttccctatagtagttttcaaattttggacaaat<br>aactataactaacaagtttgagtttaatccattttaagcaaagagatattgtgttggcatatttctattcgtaattcactgaagtgataag<font color="green"><u>GAAATTCTA<br></u></font><font color="red">TAGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGAATTTCCATCTGAG<br>GTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACTGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACC<br>TGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTT<br>TTCAGACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAG<br>TCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCTGCCATTGCCCAGGCTTCCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTG<br>GGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAGCAAAAAGGCAGCAGTAACCTCTGCA<br>GACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTACCTCCTCAAGTGGGTC<br>CCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTACTCCAACAGACCTGCAGCTGA<br>GGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAA<br>CCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGA<br>ACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAA<br>GAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTC<br>GAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCTATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGA<br>AGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGGCCAAATCTACGTCTGATTGGTGTACCT<br>GAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTC<br>AGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTT<br>AAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCGGCGAAGGACATGAACAGACACTTCTCAAAA<br>GAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACAC<br>CAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCAGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACT<br>AGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAG<br>GACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAA<br>TGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAA<br>ATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGA<br>CACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAG<br>TGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAGCCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAATTCTA</u></font>aacaatgcaaagttcagcctttaattactacacttctatctctctggcagttatctagctgcaaaagca<br>ggtacctcaaaacttagtggtttaaaataacaatctgcaacttggacggggcttgacaggaaggctcatctctgcttcacatgacatcagctttggtgtc<br>tccaccgagagttggcgacccctctccaagaggggtcactcacaggcactggttattggctgggagctcagcctggattgagagataggaacttcattcc<br>tctccatgtgggtctcttcatgtagcccaggcttcctcactgcacggtggctggctgctgagggaaagtgactcaaggaccgtattgcctcttaagaccc<br>aggcttggaagttatacagtgt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	57	2606	84	NA	intergenic	
0	chr4	57782108	57782491	2000215	0	-	8419; L1HS57; RIP_L1_chr4_057_01	CAGCAAGACTCTGTCTCTAAAATGAT	GGACTTGAATTTGGTCTTGTTTCTA	LINE	L1	L1HS	ataagtcaggtatagtggtgcatgcctgtactcccagctacttgggaggcagtagtgggaggatcccttgagcccaggagttggatgctgcagtgagtta<br>tgatcacgccactgcactccagcctggattgcagtcaaagaaggtcaggcacatctagccacctattaagatctgtttgaggaagttagtttgaaaactg<br>gtctagaccacagccaatcacctcacctccaaccttccctccaccagctcccatagcagggttaacagagcaaatctgtgcttgtcaaagtcagactata<br>attttcttatttcagtttctccatgagcaaaatggggaagataatgccagcaagactctgtctctaaaatgataatgacagctgct<font color="green"><u>AAAGAACATTTACT<br></u></font><font color="red">CACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAAC<br>TATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTG<br>GGGACTGAGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACA<br>TGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAACATTTACT</u></font>at<br>gtatcagacactgtactaagcgctgtgcatgtataatctcatgtagtctttgcaacaaacccttgagataggtgttatttccatttttcaactaaattac<br>agaatgtgatagaaacaagaccaaattcaagtccaacagcatagcccatgctattaacgaccatgccttcttacctcctgtgattgctctgcagggcaga<br>atgactacgtaaagcctgactgaaactagtcatacaggaacaggaaacccagagtaagggtctgcctcaggcctcagcaaaggacatttagttacaggga<br>agaccagaagtatcaggttataacccagcttcacagacagctttctgtaggtgttgacacacatcctttcctctcttcctggtc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	59	589	195	NA	intergenic	
0	chr22	17091526	17092024	2000216	0	+	L1HS85; RIP_L1_chr22_017_01	TTTGTATGCCTTGTGTTTTGTATTG	AGGAGAGTCTCATCTCCAGAGTTAC	LINE	L1	L1HS	cgtccttatttctgttcctctgacttgatcatttcaagtgtcccatcttcaaattcactgaatctttcttctgttgctcaaatctgcttttgaatccctc<br>tggtgaacttttatttcaatcactacacttttagttccagaatttatttattttttttctttttaggttttctatctctttattgatattcccattttgt<br>ttacacataattttactgactttctccacatcttccttcagttctttgaccatctttaagaaagttgttttaaagtatttgtgtagtaggttaccatctg<br>gtctttctctggaacagtttctgttgttgtttttcctttgaaataccatattttcttgttttttgtatgccttgtgttttgtatt<font color="green"><u>GAAAACTGGACACTT<br></u></font><font color="red">AAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAG<br>ACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGTCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGA<br>AACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGG<br>AAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTG<br>CAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAA</font><font color="green"><u>G<br>AAAACTGGACACTT</u></font>gaatataataatgcagtaactctggagatgagactctcctcttcctcagggtttgctgttttggggttttgttatgttttacattg<br>ttgtaggttgtctccatgctgaggatcaacctgagttgtaagcttgaggtcttctcaggtctgaagctgctcctttccctgggcacacactcctctctcc<br>aaggatgtgtggtaactttaatttcctctgtgtatgccattgcttttgagtgtcctagtctttaatgtttggctcccaaaaaaggaaaagagaacaacga<br>aggggaagggaaatggggttctggccttttctatctcctagaagttgcttcagtctggtaagggcttgcagcagtggagtggggagttgtgagcaataa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	58	593	79	NA	intergenic	
0	chr5	57715759	57721852	2000217	0	+	L1HS220; RIP_L1_chr5_057_01;AC226350	ATTGGCCTTCAGAAGTGATTAAGAC;NA	TAGATAGCCAGACAAACAAACCTTG;NA	LINE	L1	L1HS	tttaaccactatgcaatgctatcacttatatgataatcaataattaggcaagtatgcatgcaatttgtatacatacaagacagagacaaaaaaggttgtt<br>acgtttttcttaccgactcttgttcaaaaatgaataaatccctgctggcttctttaataaagattgagtaaatatatttagttatcttaaattattaatc<br>tataaatcagctcatactcagatatatgaaatacattctgcttttacctcattgtaaagattatgcctactgtttgcctttaaaacttaatttaaaaaat<br>gtaactttaaaagatgccttctattattggccttcagaagtgattaagacccagccaatgcagaaagagaacaaaacaaacacat<font color="green"><u>AAAAACAAAAAACAC<br></u></font><font color="red">GGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGTCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAAGAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGTGATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCAACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACTGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAAGAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAACCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGACTTAAATGTTAGACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AACCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCTTAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTGAGAGTATAATAAAAAAAAAAAAAAGAAAAAAAAAATAAAGAAAATGTGGTATAAATACACAATCAAATACTAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAA<br>AAAAAACAC</u></font>cagaacagaataaagtaaatgaaagctaacaaattcaaggtttgtttgtctggctatctattttaaacctcaagtggagacttaaccaaat<br>gtgggtttatttttctcacataagaagatgttcagaagtaggtagtcccaggcctttacagaggtttggaatgtcactaggcacgtcttatcttcccatg<br>ctgtcatcctcagtgtggggctttcatcttcatgctcacaagatggctgttgcactcctaggcatcacatacacattccaggcagaaaacaaaaaaaggg<br>caaaaggcaaagggaaagatgcccaatgcatttgtccctctcaaaacacccccagaccaccagaagatttctgtttacgacaaattaatcagaa	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	6244;NA	135;NA	NA;NA	intergenic;intergenic	
0	chr6	66316761	66318742	2000218	0	-	L1HS226; 54985; AF417134; RIP_L1_chr6_066_02	CCCTAAGCCTGTCAGAAGTTAGTATC	GCCATGAAAGATAAGGAGATAAGAG	LINE	L1	L1HS	ttggtagtttgtgcaatatttgaaaaaaaaattgcagtttaaagtaaaattatttaaaataatttgaatcatcaagccaatttcattttcatgttaagta<br>taatgattacaagatttttaaaaataaactcctgttaaaatgtcttgaacaacttgagagaacaatgtttatttcttagttagtggattcttacttctaa<br>taaagatggatcacttttgcttagggtcactgaaaaagttccaaataaatgtaaaagcaatctttaaagacaacataaagctagcaaagtagtcgagata<br>acaagtttgagatgccatgaaagataaggagataagaggtaagtctggaatctgaatccattttgccttgaggtttctccctgatcag<font color="green"><u>AAAGATATAGTA<br></u></font><font color="red">TCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGT<br>CTGTTCATGACCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAG<br>ATGAGTAGGTTGCAAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATC<br>CCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCT<br>TCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTC<br>TACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTA<br>GATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAG<br>TATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCATATGAACTTTA<br>AAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGAT<br>ATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTGTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCC<br>TTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGTCATCTCACACCAGTTAGAA<br>TGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACC<br>ATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAA<br>TCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACT<br>GGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAAC<br>CATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAG<br>GGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAG<br>CGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAATAAATAAAAAA<br>CAACTCTCAGAAGCAAAAAAAAAAAAAAAAAGCAATCTTGCAGATATCTGACCAGTCTAAGCTGTTCAAAGATATGTTGCATGGAGAAAATAGAATAGTA<br>GAAACCTAGACAAAGACTGGGAAATAAAGATGGTCTTATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGATATAGTA</u></font>gagtca<br>gatactaacttctgacaggcttaggggaaaaacaggttcagctacaaaagggctcagtgaaaaataatggatgggagtggacaaaaagcatctgtctagt<br>catttggggaattcactgtaccactggtccagggaggatggttgccaccttgcccctccctgagacatttctggccaactccagagcccaatgctccctg<br>cattccagaccaggacatctgtatggtggaacatcgatctccctgactaatgtaatctgtaactgttctggccaatgggcggcagccattgaaccagatc<br>aggaaggacaaggataggcagacagggttgactgggagaagctgtcagaaaaattcttcctgaggagaaagtcaggttggaa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display; E:Insertion-specific detection:PCR	NA	60	2114	120	NA	intron:EYS:NM:198283:1/10	
0	chr12	42263728	42265816	2000219	0	+	L1HS293; RIP_L1_chr12_042_01	TTACAATGGATACGTTAGACAGCTC	CCATAATTGGTTAGGATGATGAGAC	LINE	L1	L1HS	atccaacatttattgagtgaccatgatatttcaggcactgcaccaggtgctgaaaacacagacatccataaattatattctttgtccaaaaaaagacaaa<br>caattatataattatattacaatggatacgttagacagctcccagtaataaggaatctgacgccaatttcatttttgatgtttgactattgacagctttc<br>atgccctaccctacgcctttcccttttgtcccacataaggggaagataaaaagaaaaccttggggctccattcattggtgttggcggagaagtgcacacc<br>attcaaacccagttcctctgggaacattcactacagccccaccctctcagcacaatagaaaccaaagccactggcttcccttttcactc<font color="green"><u>AAGACATTCCA<br></u></font><font color="red">TGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTCTGT<br>TTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGG<br>GCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCT<br>CCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCAGTTTTCAAAGGGAATGCTTC<br>CAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAAATACGTCCCATCAATACCTAATTTATTGAGAGTT<br>TTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTA<br>CATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGACAAGCTTTTTGATGTGCTGCTGAATTCGGTT<br>TGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCCGGCTTTGGTATCAGA<br>ATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCTCCTTGTACCTCT<br>GGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTATTGCCACAATTTCAGAGCCTGTTATTGGTCTATTCAG<br>AGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTCGAGGAATGTATCCATTTCTTCTAGATTTTCTAGTTTATTTGCGTAGAGGTGTTTG<br>TAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCGGTGGTGATATCCCCTTTATCATTTTTTATTGTGTCTATTTGATTCTTCTCTCTTTTTTTCT<br>TTATTAGTCTTGCTAGCGGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGATTCATTGATTTTTTGAAGGGTTTTTTGTGTCTCTATTTC<br>CTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCTCTTGCTTTTCTAGTTCTTTTAATTGTGATGTTAGGGTG<br>TCAATTTTGGATCTTTCCTGCTTTCTCTTGTAGGCATTTAGTGCTATAAATTTCCCTCTACACACTGCTTTGAATGCGTCCCAGAGATTCTGGTATGTGG<br>TGTCTTTGTTCTCGTTGGTTTCAAAGAACATCTTTATTTCTGCCTTCATTTCGTTATGTACCCAGTAGCCCAGTAGTCATTCAGGAGCAGGCACTATTCA<br>CAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAA<br>AAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAAATGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTC<br>TCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGAT<br>AGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGATGCAGCGCACCTGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCAC<br>ATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAGGAATTTTGATAGAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACATTCCA<br></u></font>gaccagcttttatgcctgcccagcttttttttagaaagtctcattatgtgagcaataaatcttttcctaccgcttggatggagggatggaagcatcttca<br>gtctaacagtctcatcatcctaaccaattatggatgagtgtttattgccctccacaaagcaaccacaaaacatacccccgcctcctggtattcatgccct<br>tgtataattctctctgcttgaatgtgggctgagcctagtaactagcttcaagcaaatagaatacagcaaaagtaatgggatgtcttttccaaattaaatg<br>tcaaaaagactcttggtttctctcttgctcaacttctattgctctcttgctttctctgatggaaaccagttacctatgaacaggtccac	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	2517	417	NA	intergenic	
0	chr12	40524316	40525153	2000220	0	-	L1HS298; 31032; database22; RIP_L1_chr12_040_01	ATATACCATACTCCTTTCCCCTTCC	TGAGCCCTGTATTTTAATCACTTGT	LINE	L1	L1HS	agatgagacatgggtgatggtgatcatggaagggccttaaagccacagcagggactttggcttttactcttgaatttgatgggatgtcatgagaaggttt<br>tgaacagagaaattgcatgatatgacatatatttttgcaaatttttccttgaataccaaatacatgatatatatgtcatatgaaatatgtacatataaat<br>atattaaatataagtatagtatacatatatgtatgttcataagtatataccatactcctttccccttccctccttctttttctccctccctgtgctatta<br>attaaaataacaattttacagttaatcacagtctgtttgtaactcctgcactattgttttatatcacaggagcttaatttatattgcccaatag<font color="green"><u>AAAATA<br></u></font><font color="red">TGTAGCATCCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGG<br>AAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGA<br>TTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACAT<br>GCACACGTATGTTTATTGCAGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACAT<br>ATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGCTGAAATTGGAAACCATCATTCTCAGTAAACTATCG<br>CAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGAC<br>TGTGGTGGGGTTGGGGGAGGGGGGAGGGATAGTATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTAT<br>ACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAATAAAATAAAATAAAAAAAAAATAATTGAAAAAAAAA<br>AAAAAAAAAAAAAAAAGGAAATTTTGTGCCTTCTCCAA</font><font color="green"><u>AAAATA</u></font>gcttggaaatttacaagtgattaaaatacagggctcaaggttattaaattttgaac<br>ttgttttgctttcatactgttaaaaaaaagttcctcaagggcagggtgcaggttgagtttccctcatctaaaagcttgggaccggaagtgttttaaattt<br>aaaatttttccaaattttggaatatttgcacaaacataatgagatatctgggggatgggaaccaggtctaaacatttatgttttatatataaaccttatg<br>catatagcctgagggttttatttataatatttaaaataactggggcataaaacaaagttttgatggggttttgactgtgacctgtgatatgaggtcaggt<br>gtggaattttccacttggggcatcatatgagggtggaa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	1037	80	NA	intergenic	
0	chr2	76380021	76382401	2000221	0	-	L1HS345; 239018; RIP_L1_chr2_076_01	CACAGCATTTACCAAAGCACTC	CTCAGTTCATTGCACAGTTTGG	LINE	L1	L1HS	aaagatgtggagctctaatgtagtcaccacgaaagcccatgattgccctatagggtattctgaagcagggacaggctcccagatttcttggtcgttgcgg<br>ggaaagcactgggccttcactccctttccacattgacagggcactggacatactcaccctaaggagagggcacacctgtgggtgaaacagctctccttag<br>ccaagaccaagagggctgagagctgagcactgctgctggccgtaccctcagtccctcccacctgaagggtgatcagggcagcttgtcacagcatttacca<br>aagcactctttacaattctacaaataaatttaccatttcagagctaatttttaaaaaatatataaaattaccaaaattcacttaat<font color="green"><u>AAAACATGGAAAAC<br></u></font><font color="red">TTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATT<br>TGTTTGTGTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCT<br>CTTTGAAGCAATTGTGAATGGGAGTTCACTCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTG<br>TATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGG<br>ACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGTGG<br>TGAGAGAGGGCATCCCTGTCTTGTGCCAGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCT<br>CTTATTATTTTGAAATACGTCCCATCAATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTG<br>AGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATTCAATG<br>CCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCTCCAAGTCAAT<br>CCTAAGCCAAAAGGACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCCACAGTAACCAAAACAGCATGGTACTGGTACCAAAAC<br>AGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGG<br>GAAAGGATTCCCTATTTAACAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAA<br>TTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGAC<br>TTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCA<br>TCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAAACTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAAT<br>TTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAG<br>AAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAA<br>ACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATT<br>CCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGC<br>ACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATAT<br>ACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCA<br>AGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTG<br>TGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATAC<br>ATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAACATTTAAAAAAAAAAA</font><font color="green"><u>AAAACATGGAAAAC</u></font>ctaaa<br>agatattgtacccctgttaagcattttaataaaaagttgacaaactgtcccccaaactgtgcaatgaactgagattttagtggggagttgtattgagact<br>gcaaaaaaaaaaaaaccaataaaattataaaccaaacttatttataaatacagttgtcaaaatgtaaataaaacatggactaacataacccagccctgtg<br>gtataatgacatcatgcccaaatatggtttatttacgatatggggtataatacaataggatgtatgattatctcgatagatgtccctaaaagcgcattta<br>atttgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagattgatttctcatt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	2587	192	NA	intergenic	
0	chr4	44202023	44202488	2000222	0	-	L1HS393; RIP_L1_chr4_044_01	TACACAGAATCTGATGCTAGGAGAG	CGGGAACATAAAGTCATAGCGTAAC	LINE	L1	L1HS	atgcaaataagcagaaaaatacagcaaaatggtgaaaaattattaaagcaatccagaaagcaaacaaatgatagaatatttgcacccattagcaaaacca<br>gaatgacgctttttgtcagattataaacacctgaaggcctggaattacattttgtatttaatttataaatctcaaagggagagagacctgtagtatactt<br>gacccatcactgagagtgacatgagtgctaatttattaataacctgcatgtattatacaataataaatttttaaaaaattgacctcccattttacaaagt<br>acatttatatgtgttacattatttgttcataatataaaactggagaatagagccatttacacagaatctgatgctaggagaggttaaacaac<font color="green"><u>TTACTTAA<br></u></font><font color="red">GAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCT<br>TTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTG<br>AACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTA<br>ATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAG<br>TATAATAAAAAAAAAAAAAAAAAGTTTTAAATTTAAAAAAAAAAAAAAAAAAAAGATTATAGAATT</font><font color="green"><u>TTACTTAA</u></font>atactctagttttcttagttctttcc<br>atacattatagtgcctttctgttttattctgtaatgaaaggtcaactaaaagagaagagtttatactgaataacatagctttataaattcaatgtgatat<br>aaatttaatatgacattaacattaaaatttagagttgtcatttttatatggattataattctaatatcttgaatactctgtctgttacgctatgacttta<br>tgttcccgttaacaaatattttaaacaatgttgatttgtgttaggtgttggacatcctggaactcttaatggagtagtaacaccatctaaggctagccaa<br>tgtaaattgtggtctgaaaagcctttaagcactagccagtataccttgtggtgctattgcatcaag	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	61	751	277	NA	intergenic	
0	chr15	51743408	51743409	2000223	0	+	L1HS404; RIP_L1_chr15_051_01	CCACCTTACGTTCAGCTGTTAAT	CGGTGATTAGGTGACAGCTTTT	LINE	L1	L1HS	agtagctatgaagctcttcaagagagtgaaataaatatcagtcagtttaccttctgggagttaaattagttaaaatgacacttgatgaatgagatttgct<br>cctgcagaccctagacatctgaaacgcataggtcaagagacattcccccggttctcagctaatactctgacatataatttccactataagatgctaactc<br>tgttatgaatagtgagcaacaaagacacatcaagatggggatgcttggcagctggctcagctcactcactgggctttattcactatagccttatgatacc<br>taagactgtcagtgtggttcaatttcccaccttacgttcagctgttaatgttgaagtttcaatgcatctctataactgtcctt<font color="green"><u>AGAAAAATGACCTTTTC<br></u></font><font color="red">GTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATT<br>GAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCCGGCTTTGGTATCAGAATGATGCTGGCCTCA<br>TAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCTCCTTGTACCTCTGGTAGAATTCGGCTG<br>TGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTATTGCCACAATTTCAGAGCCTGTTATTGGTCGATTCAGAGATTCAACTTCTTC<br>CTGGTTTAGTTTTGGGAGAGTGTATGTGTCGAGGAATGTATCCATTTCTTCTAGATTTTCTAGTTTATTTGCGTAGAGGTGTTTGTAGTATTCTCTGATG<br>GTAGTTTGTATTTCTGTGGGATCGGTGGTGATATCCCCTTTATCATTTTTTATTGTGTCTATTTGATTCTTCTCTCTTTTTTTCTTTATTAGTCTTGCTA<br>GCGGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGATTCATTGATTTTTTGAAGGGTTTTTTGTGTCTCTATTTCCTTCAGTTCTGCTCT<br>GATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCTCTTGCTTTTCTATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCC<br>AAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTG<br>ATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGG<br>CACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAA<br>TTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAA<br>GCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGA<br>ACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTC<br>AAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTT<br>ACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCAT<br>TGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTAC<br>TGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAA<br>ACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTA<br>TACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGC<br>GTGGGCAAGGATTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAA<br>AAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGA<br>ACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAA<br>AAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTA<br>AAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTC<br>AGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTAT<br>AAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAA<br>TGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAG<br>TAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACA<br>CTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATG<br>GCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAATGACCTTTTC<br></u></font>aagttaagaataggaaaaataggttttaaaaacctaaagacaatggattaaatgagaaaagaaaaaaagctgtcacctaatcaccggtttcaatatctga<br>aggaggaaagtacaaacaaaagcaggtgttctaaatggagtcttaagaagagaaatacaaaattcagaaatgtttccatgcattattagctttgaccaag<br>ggagatggtactctgctgggctgaaagcattggctacattcaactctcagagctcagtgaatgaatatcctctgggctctgactccatttccatcaaggc<br>accctgtaatacaatttcccctggcctcagatttgctacagtgagaatgtaccaagcaataaccagaatgccaattaaagaat	Other	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	3262	163	NA	intron:WDR72:NM:182758:14/20	
0	chr14	42738619	42738620	2000224	0	-	L1HS561; RIP_L1_chr14_042_01	TACCCATTTAAAGGGCAAAGTG	CTACCCATTTAAACCACTAATGCTG	LINE	L1	L1HS	tcactggaatgaatgtgaaggcttaacttgactattttgaagatatcaaactcatttagtgtataagaaaaaattaattccatagttatacattataact<br>cttaaaagtctcagaaatagctaagtgaggagatttgaatgccagcaaagccactttgtaactccatgacatcaacattaaacattccattccatcccta<br>cctgtaaaattttcacattttttctcatattctcttaaatgcatttttctctctgtttgtatttaacaggaggaaaagtgcagttgatttggggaggaag<br>acttattctgagtaacaggagtaaaaagaggatagttttacccatttaaagggcaaagtgaaacatacaatataagattgcttttt<font color="green"><u>AAGAGTAACTCAGA<br></u></font><font color="red">CACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGA<br>GGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTG<br>CACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAATAAAAAATAAAAAAAAAATAAAGAGAAACAAATGACAAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAGTAACTCAGA</u></font>aatttcaaaatacaaatttgaatagcagcattagtggtttaaatgggtagtgtattactcagggttctcaggagggacagaagc<br>aataggatacacgtatgtacaaagaggagttcattaaggagtattgattcatacaatcacaaggtgaagtcccacaataggccatctacaaattgaagag<br>caaagaagccagtccaagtcccaaaacctcgaaagtgtggaagccaacagtgcagccttcagtctgtggttaaaggcgcaagagtcccaaagctgaaact<br>cttgggagtttacctgatgtttaaaggcaggaagcatccagcacaggagaaaggtttagcctggaagactaagctagtctattccttcaacattcttctg<br>cc	Other	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	61	430	114	NA	intergenic	
0	chrX	42649558	42649559	2000225	0	+	L1HS564; RIP_L1_chrX_042_01	TGCAATTGACATAGATACTGCAGAG	CCCTTCCCTTTCTGTACATGTCTT	LINE	L1	L1HS	cacagagttgaaaaatgcaattgacatagatactgcagagtatctatgatgttagagtgtaggggttgcttttgttacctttactttccttgtcatcaaa<br>gttaagtcattatcagtttaaaataacctgttataactataagatattttgtaagcctcatggtaaccacaaacaaaatcctgtaatagatgcactataa<br>acaaatagtacagcatcaaaacatactgttagagaaaaacacttaagagcaggaaaacagaaagacagaaatggagaaaggatttacaaaagaaaaaaac<br>aaaaaaaataagtatcaaaatggcagtagaaaatccttacctatcaatatcattgaatgtaaatggattaaattcttcaattagaataaat<font color="green"><u>AGAGTGGTT<br></u></font><font color="red">ATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGAT<br>CCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAA<br>GATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTT<br>ACTGTTTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTA<br>AAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCATCCTACTCATCTGACAAAGGGCTAA<br>TATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGA<br>AGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCA<br>GTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAG<br>TTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGA<br>GTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATG<br>ATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTTGGGACATGGATGAAAT<br>TGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACA<br>CAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGGGGAGGGGGTAGGGATAGTATTGGGAGATATACCTAATGCTAGATGACACATTAGTG<br>GGTGCAGCGCCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGACATGTACCCTAAAACTTATCGAGTATAATAAAAAAAATAAAATAA<br>AATAAAATAAAAATAAATGAAAAAAAAAAAAAAAGAGAAATGCCATATATAGTCAAAAGTTACTGACTTGTAGAAAGATTTAGCATGCATATCACAAGGA<br>CTAATGTCTTTTAAGTTTCAGAGCCCATGTGGATTTCTTCTTCAGTGAATAAATACATCCTTTAGCTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA<br>ATAAAT</font><font color="green"><u>AGAGTGGTT</u></font>gagtgattttaaaaaacaagaaccaaatacatactgtctacaagaaactgacttcacctataaagacatgtacagaaagggaagg<br>gatagaaaaagtgaagaatgaaaaatattgcaatcaaatggacacaaaaaaagagcaagaatagatcttttactagtaactcttttttttaaagtagagt<br>ttaaataaagaatggcaaaaaaggacaaagaaggccattatataatgataacaagatcaatatagcaagagacatacaattttacatatatatgcactca<br>accctgaagcagccaaatatataaaacaaatattaatagacctaaaaagagagattagctacaatacaacaacagtaggggatatcaccacctcactttc<br>agcgat	Other	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	61	2085	471	NA	intergenic	
0	chr11	55075383	55075384	2000226	0	+	L1HS287; RIP_L1_chr11_055_01	CCTTTTATCTGAAATAAGTGGTTGG	CTTCCTTTAGCTGGGCTGTTCTAAG	LINE	L1	L1HS	aagtaattttagattaagagaaaggttgtgaagatagtatagagagcttctgtatactactcacttagtttcccttaatattttcttcttacactactat<br>ttgtgaagactatgaaatgaacgttgatatatactattaactaaacaccaggtttattcatatttgactattttttctcctgtcttttttctattctagg<br>attcaatcttaaacaacacatcacatttaagactcttttaaaatgatttaaaaccataaatcttgttatcatacattatgaagatgctatactttctatt<br>gtcaaagtttccacactaattttggaaattccttttatctgaaataagtggttggtttctttatatctactaaatattttaattc<font color="green"><u>TAAAATGTTATTCTT<br></u></font><font color="red">TTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAG<br>CCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGT<br>TTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTGTGTCCTGAATGGTAATGC<br>CTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAG<br>TTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATC<br>AGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTG<br>TAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCA<br>TATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGCATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGGTCTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAAGAAGTTAAAAAAAAAAAATAAAATAAAATAAAAAAAAAAAAAATAAAAAAA</font><font color="green"><u>TAAAATGTTATTCTT</u></font>ct<br>tagaacagcccagctaaaggaagtggagagattaagaattgtttaattattagattaatatagaaccttgtctttctttccatctccaacttttatggag<br>ttttctatgtacaatgaagctatttgaaatagaagtggatatttgacagaatgggggccacagtactttattcagggattactaaagacatttaaaagtg<br>ttgtgcattttaaaatatcatgtctgcactgagacagaccaaataaaatatttaacatttttcaaaatttatttttatttttatttttttctcttttaaa<br>atttttttattatactttaagttctagggtacatgtgcacaacgtgcatgtttgttacatacgtatacatgtgccatgttggt	Other	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	61	1693	95	NA	intergenic	
0	chr9	112219202	112225295	2000227	0	+	L1HS260; RIP_L1_chr9_110_01	GGCAACGGAATAATAGCTTCA	GTCAGCACTCCCATCTTAAATGTCT	LINE	L1	L1HS	tagtcatctcatagcaaaacactaaaacaacaaagacaagtttttaaaaagtaaccaaagagaaaacatattacttatacagcaacaagaatttgaccag<br>agtttctcaatttcagcactactgacattgtggaccagatacttcttagttgtggaggactgttctgtacattgtaggatatttagcatttttcctagat<br>tctaactattagatgctagtagcatcttccccccagttgtgacaaccaaaaatgtctccagacattgccagatgtccttggagggcaatattgtccttga<br>ttgaggatcactaaattagactcataaaggaattctgaatagcaacattagaatcataaggcaacggaataatagcttcaaaatacttatg<font color="green"><u>GAAAAATTG<br></u></font><font color="red">GAGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAG<br>GTACCGGGTTCATCTCACTAGGGAGTGCCAGACGGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACC<br>TGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCCAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTT<br>TTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAG<br>TCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTG<br>GGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCA<br>GACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTC<br>CCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTAACACGGCAGGGTATTCCAACAGACCTGCAGCTGA<br>GGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAA<br>CCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGA<br>ACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAA<br>GAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTC<br>GAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGA<br>AGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCT<br>GAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTC<br>AGGAAATACAGAGAATGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTT<br>AAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGG<br>GGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCGTATCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGAGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGATAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAAAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACAGAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAGATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACTCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTAGGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCACATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCCTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAACAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATAGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAATCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGCGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACGTGTAC<br>CCTAAAACTTAGAGTATAATAAAAAATAATAATAATAAAAAAAAAATAAAAAAATAAAAAAATAAAGTAAAAAAAAAAAAAAAGAAAAAAAAAA</font><font color="green"><u>GAAAAA<br>TTG</u></font>tcaatgtagatttgtatattcagctaaactacaattcaagagcaagggcaaaatactattagtttctgaccaagactgtgtaattcatgactcttgc<br>tggaaaagatgcaaagaacatcttcaggaagtagaaacatgaaactcaaatggaaggagtgtgatgcaaaaagaaatagtggtgaaaaaattaatagaca<br>tgtaaataaatatacataagcagtgactgcagttaaaaaatgactgatttggaaagctgtaagataaaagggaagtaaaaaggtacatagtgataagaca<br>tttaagatgggagtgctgacagaagttaatgctttctaaagtcttcaagttgttcaggaagaaggcagaaacattaagtatgatcttaggatat	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	57	6461	358	NA	intron:SVEP1:NM:153366:36/48	
0	chr1	216249126	216255217	2000228	0	-	L1HS314; RIP_L1_chr1_214_02;AC196548	TGGCTAGCAAAAAGGTGGAC;NA	AGGGCAGAGAAAAATGGTCA;NA	LINE	L1	L1HS	cttttgatcaaaaaatacaaagtcttaggagagaaaaaaaacaaaagcatgaaggccttttaaacacaaacatacatgcacacatacacacacagaactt<br>ggacgttagcttttaattaagctgagttttaaccattgagctcgttaaagaaaatctttttgaagcttattaccatatttcagctaggacaaattactgc<br>catttcaaaagtaccaaatatcaaaccagaaaggtcttgatttagaaaccataccctggctgtcatgtgaaaagaaaagaaggcagaaccttagccatgg<br>aactgcagcatggggtaacagtcattgctctttcagtttggcctggctagcaaaaaggtggacttgttatgtaaataaatcccctt<font color="green"><u>AAGAAGTCAAAATA<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTGC<br>CGGGTTCATCTCACTAGGAAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACTGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCGCCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGGGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACCCCTGACCCCTGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTATCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGCAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACTGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACCTTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTGCAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACACTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGTAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCAACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAGAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCAAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTCCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACTCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTAAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTGAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAACTCCACATACCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>CCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATCGGAGAAAAT<br>TTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAACCCCATCAAAAAGTGGGCGA<br>AGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGGAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAA<br>AACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTT<br>TTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCA<br>TCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGAC<br>TTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTC<br>ATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTG<br>GGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGAT<br>ATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAA<br>CTTAGAGTATAATAAAAAAAAAAAATTCACACAGCTGTACAAACAAATAATGACTGAAAAAAAAAAAAGAATGTTTTCTATTAAAAAAAAAA</font><font color="green"><u>AAGAAGTC<br>AAAATA</u></font>aaaatgtttcctttttccttttttccttttggtgaccatttttctctgccctccttaccatgtttttctttttttatgagaatttagccacttc<br>agagaacttgttcccaataatttggaaatttccttcagatttgatcaagtcagatagagttggtcaaacccaatgggaaaaagaatgaaatgacaacaga<br>aacagaaacaaacaacaacaaaaattagtcaagataagcaatcacaccacttgtatgattactaagcactctaatggtgttgggaaaagctgagtgttgg<br>gagaagctgaggcagggcttgcatgtctgacataaggtaaaagagtcttggaacatgtctggggtccagggtctaaaaccccttgtggcctt	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	58;NA	6215;NA	109;NA	NA;NA	intergenic;intergenic	
0	chr5	41635208	41635880	2000229	0	+	238538; L1HS442; RIP_L1_chr5_041_01	GACGGTTACTCAGAAAAACACAAG	GTAGATGCCACTGTTACCCTGACT	LINE	L1	L1HS	ttaataatgttcaaactagcagaggaggtggaaagcatcatgagaaaaacgaaatatctaatccaaaaagatgcaagaaatgagggagggcagagaaaca<br>gaaaatgtagaacgataaaagaacaaaataaaatgatataaataaatcaaatatatttgttatcatagtaaatataaatacactaaactctccttaaaag<br>acaaagagactggattttttttaaagacggttactcagaaaaacacaagaaattagtacatgtagtaaacagaacaatagaaaagagaaaatcttccgag<br>tgggaagataatagataaattctaaaagtggaaaaccaagaagtaccaatataaagcatgttctttagagaaattacaataaataaataatgatc<font color="green"><u>AGAAA<br></u></font><font color="red">CAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCGACCATTGTGGAAGTCAGTGTGGCGATTC<br>CTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTGTAAATCATGCTGCTATAAAGACACATGCA<br>CACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATA<br>CACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAA<br>GAACAAAAAACCAAACACCGCATGTTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGT<br>GGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACA<br>TATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAATAATAAAAAAAAAAAAAA</font><font color="green"><u>AGAAA</u></font>gtttaattgtctctgagcagca<br>ggaagtcagggtaacagtggcatctactgtttttcatacaagaccttgtatggtaaacaaccatttttatcttcaaactgtgtacatgtatacattttta<br>tttctttatttattttaaacaagaatgccttactatgctacctttcagttaggttattttgtttcactacatggtatgtttaagcttagttgtgaaataa<br>agaattcgtgactaaattctacacatttactaataatgagtatatagatccaaggtctaatcaatatatattggaaaatgaataaatagtgaattaatga<br>atgaaaaattaaatgttcactttgtattgaatgtcaaaaccatatataacctcctttaattactataaacaga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	907	224	NA	intergenic	
0	chr4	66323716	66324016	2000230	0	+	L1AD77; RIP_L1_chr4_066_02	TCAAGGAAGGGAGTTAAAAA	ACTTCTTTCATGCCCCTTAT	LINE	L1	L1HS	aatatcttttaacaaaatatggtagacacaaaagaatacactcactgcaattctatttatttaaagttaaaaggcaaaaatattgtttagggacattctc<br>tagtgacaaaaacatttttaaaacatggtagtgacttagataaaaagtggagctggtcaaagagcacacatttcagtttgtaagatggacaagttctgga<br>tatctatggtatagcatgggtggcaatcaaataatttatttgattatggtaatcattatgcaatatatatgtaagtcatcacattgtcacattacttctt<br>gaatatatataatatttgtcaaataaattcttaaaaacaaatatcttgtgctaaaaaatttaaaaatctgttattaattttaaaatattt<font color="green"><u>AAAATAAACA<br></u></font><font color="red">CCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGAACACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGG<br>GGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACCTGCACAAT<br>GTGCACATGTACCCTAAAACTTAGAGTATAAAAAAAAAAAAAAAAAAAAAAACGAAAAGTGATCCAAAAAAAAAATAAATAAAAAAAAAAATAAATAAAA<br>T</font><font color="green"><u>AAAATAAAGA</u></font>ttagaatagtggttacctttagagggataaggataaggggcatgaaagaagtttcaggaatgttgtccatcacctatcttaacataggt<br>agcagttacatgggtatttgcattctgaaaaatcattgagctgtacgattttacagtactctttttatgtgtgttacatgttataacgaaaataaaggta<br>tgactatagaatgggtccaaaatggttatattataaacatcgtagacttatgattatctaaaatttcatagattgtattatttttattatcaatgtttat<br>cttcataatcagcttaaaattagatggcattattcctcttgtattgatgatgaaaacactctcagaaaggctaagtgatttccctataatttttagctag<br>g	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	55	991	729	NA	intergenic	
0	chr16	83046872	83049602	2000231	0	+	L1AD82; RIP_L1_chr16_083_01	GGTGTCTCCACAGTTGATTC	CCACCGCCAGATTTTACTA	LINE	L1	L1HS	gtgtggggtgagaaaggattaaaatgaacatcttccgtttgaggcctgcgtgttgatacatatatctcaggcattgcaaagagacctgggcagaaacacc<br>cccatcgctgaccacggaggtgctctctaggttctggggcttgcacaaaactatttgttctgtttcacttttctgtatttttttcttaatacatttacct<br>tcctaattttaattagttctgagactctcctcataagctaatcgcagtggttagttgggggtgagggaaaactttttaagcctgatacaaaaaatccaaa<br>taaacaaatattgaggctaggtggatcgtgcactttacaaaggtgtctccacagttgattcgccataggaagccttaacacacttag<font color="green"><u>AAAAAAAAAAAAA<br></u></font><font color="red">AGTCATAGATAGCTCTTATTATTTTGAAATACGTCCCATCAATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTT<br>TTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATC<br>CCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCA<br>TCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCCGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCC<br>CTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTC<br>TTTTTGGTTGGTAAACTATTGATTATTGTCACAATTTCAGAGCCTGTTATTGGTCTATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGT<br>ATGTGTCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATT<br>CAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCA<br>GACGACATGATTGTTTATCTAGAAAACCCCATGGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATG<br>TACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATA<br>CCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAAC<br>ATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGA<br>CTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAAGCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGG<br>AGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGA<br>ACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAAT<br>GGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAA<br>CGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCA<br>ATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAA<br>CATGGGAGAAAATTTTCACAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCC<br>CATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATC<br>AGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTG<br>GAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAAT<br>ACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTA<br>TTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCA<br>TAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCACAT<br>ATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGGA<br>GGGATAGCATCGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATG<br>TGCACATGTACCCTAAAACTTAGAGTATAAT</font><font color="green"><u>AAAAAAAAAAAAA</u></font>tttaaataaaaaaaaagtcataatatcagctctatagttcttttcaaaatatttta<br>gtaaaatctggcggtgggggcacccacggtgcgtaattgtttttctacattagtgaccccaggtcaaggtttaaaagggcttccgcgaagagccttctaa<br>agacagaagcaggcgatgtccttcagcctccccatccctccctccttaccgtcctccggacctcatttttaggccgaactggttttgctgcgtctctctc<br>tcctctttggtaaatcgcggagatgcacggcgcacttcgggagtctgggcagggatggggccccctgggctcggccggagagtaattcatggtctgattg<br>gaggcatcaggtgtacccttggcacagaagg	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	55	2876	117	NA	intron:ATP2C2:NM:014861:21/27	
0	chr5	166326344	166332398	2000232	0	-	L1AD100; RIP_L1_chr5_166_01	CCTGGGTCACAATATGAAGA	TCTGATAACCAGAAGATGAAGA	LINE	L1	L1HS	cgcgatctccactcgctgcaagctccgcctcctgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccgccaccacacc<br>tggctacttttttgtattttttagtagagacggggtttcactgtgttagccaggatggtctcaatctcctgacctcgtgatctgcctgcctcggcctccc<br>agagtgctgggattacaggtgtgagccaatgtgcccggcctccaaaaaccctttacataattgctcagagcccataaggaatgagaagacaagaggtaaa<br>ctgctatttctaggaaattaataatagtaagaagtagaatctgataaccagaagatgaagaagataaaatttaaatttcccataaaaaa<font color="green"><u>TTTGAAGGCTT<br></u></font><font color="red">GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACAGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CCCCTGACCCCTAACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCT<br>GAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAA<br>AACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACA<br>GAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCA<br>AAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGC<br>TCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGA<br>GAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTAC<br>CTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGAT<br>TCAGGAAATACAGAGAACTCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATG<br>TTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGT<br>GGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTT<br>TATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCCCTAAACATGGAAAGGAACAACTGGTACCAG<br>CCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGAT<br>CAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATC<br>AGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAA<br>AAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAA<br>TTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACTCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGA<br>CTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCA<br>GCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAA<br>TTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACT<br>CAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATA<br>AAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATG<br>CCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAG<br>GCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATC<br>AACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATC<br>CCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACAC<br>TCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGT<br>CCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAA<br>TCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAA<br>CATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATG<br>CAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAG<br>CCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACC<br>CACAGCCAATATCATTCTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATA<br>GTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACA<br>TGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAGTCTCAGGATACAAAATCAATGTACAAAAAT<br>CACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAAT<br>CCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGC<br>TCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCA<br>CAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCAC<br>ACTACCTGACTTCAAACTATACTACATGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCTC<br>TCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGG<br>AAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACC<br>TAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACA<br>AAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGA<br>AAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAA<br>GTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATG<br>CAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAG<br>GAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGGAATACCATTTGA<br>CCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATA<br>GCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACAATGGAATACTATGCAGCCATAAAAAATG<br>ATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACT<br>CATAGGTGGGAATTGAACAATGAGATCACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCAT<br>TGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGCCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTA<br>CCCTAAAACTTAGAGTATAATAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TTTGAAGGCTT</u></font>aatttaatgtgtaggtaaggcttccaatactgca<br>tttcaatagcacttctggatgtcttcaaattacaatatggtaggacagcaatgatgttaatgatatttacgttgaatccattcttcaattgcagtgtaat<br>gtcaaaaattaaagcctggattcctcagtctatcacataaggctcttcatattgtgacccaggagtgggatgtgcttttcctcacataaaccaatgcgct<br>ccaacacactggatcagcagtgactgcgtggataggtatttggaggccatatctacacaagcaacattgttctgagtgatgagattgattcgttgatggc<br>tgctgctggtagggacctagtatagtgctgcaaatgccatgcatttccccaatat	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	55	6324	258	NA	intergenic	
0	chr2	2240427	2242194	2000233	0	+	L1AD135; RIP_L1_chr2_002_01	CTCAAGGGTTCTCATCACTAA	GGAAAGGATACCACAATCAA	LINE	L1	L1HS	tgaaacacacagcccctgcaatttgctattatgactttgaacttggggctcatattggaaatgactgacggttttctctatcgatgatgtcttaatgccc<br>tgggattgtttttccaggttggagccataaggaccttgaaagatccaatcttggctgcggtggcttatgcctgtaatctcagcactttgggaggctgaag<br>cggttggatcacgaggtcaaggatgaggagagatgccattcaaggaacagaaaaccttaccagacaggaaaagtaagtcctggagctctaacgcacagca<br>tggtgactatggtaaatagcactgtatcgtctatttgaaatttgctaagagagtagcctcaagggttctcatcactaacttttt<font color="green"><u>AAAAATGGAACTATGT<br></u></font><font color="red">AAGTTGGATTCCTAGGTATTTTATTCTCTTTGAGGCAAGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACA<br>CAAACAAATGGAAGAACATTCCATGCTCCTGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATCTACAGATTCAATGCCATCCC<br>CATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGC<br>CAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAGGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATA<br>TAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGA<br>TTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGA<br>TGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGT<br>CCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGT<br>GAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATCTACAAG<br>AAAAAAACAAACAACCCCATCAAAAAGTGGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCT<br>CATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAG<br>GTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGG<br>GATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTA<br>TGTTTATTGCAGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCAT<br>GGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAA<br>AAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGG<br>GTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTA<br>ACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAACATTAAAAAA</font><font color="green"><u>AAAAATGGAACTATGT</u></font>gaggtgatagatgtat<br>tagttagcttgattgtggtatcctttcctaatgtatatatatatcacatcatcacattgtgtatcttaaatacatatagtttttatttgtcaattatatt<br>ttaaaagagctgaaaaaaaatcaggaatatgtccccaaagtgaaaattgtgacctgaaaatctccaaatctttaggattaatgggaaaattaaaatcaca<br>ttctgactgaccctcgtcttatagaaaatgtggctagtatcgatccattccagggagtgctaatccccctgggatggatgtcaaggtacgggtcatcccg<br>acggcagatgggcttcaggattgggaatcctgggttggagccctgtcaatgtgtgtcgctggccaggt	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	1871	87	NA	intron:MYT1L:NM:015025:2/25	
0	chr1	187351567	187351862	2000234	0	-	L1AD189; RIP_L1_chr1_185_01	TGTTTCATGGAGTGTATTTCA	TGCAATGTTAGAAGAAGTGG	LINE	L1	L1HS	acaggggtttggtgtacagattattttaccactcaggtaataagtatagtacccaataagtaatttttaaatccctatcctctttcctgcctccaacctt<br>aagtaggctcttgtgtctgtttcttccttctttgtgtccgtatgtactcaatgtttagctccctctcataagtgagaacatgcagcatttgttttctttg<br>tccctggtttagttcacttcttatcaaaaacgatggaagctagaaagtagaggaatgacctagtcaaagagctgcaagaaaaaaaaggataaaaaatgct<br>caatgttgaatcttatgtccggaaaaattatctttcaaaaattaaactgaaataaggacattaccacataaagaaacactcaagaatgcaatgt<font color="green"><u>TAGAAG<br></u></font><font color="red">AAGTGGTGAAGAATAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACACGGACACAGGAAGGGGAATATCACACTC<br>TGGGGACTGTGGTGGGGTCGGGGGATGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCA<br>CATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAATAAAAAAAAAGAAAGTTCTTTAGGC</font><font color="green"><u>TAGA<br>AG</u></font>caaacaacagtataaagtaattagaatacacacaagcagagaatgccagtaaagataattataggtaagtataagaaaatatagttatgtacttcttc<br>ttctttcttttctcaatggattgaaatacactccatgaaacaatactatgaacaactttgccaaacatagattatttagataagatgggcaaattcctaa<br>aaagacaaaaatcaataaaactgaatagaaataaataaaaattgattatacctattataagcaaagatattgagttagtaattatcttattacctcaaat<br>caaaatttagaaaaatatacctttattggtgaactctgccaaacatttaaaaatgaataaatatctcttttacaagtcttataattgcagaagtga	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	55	456	198	NA	intergenic	
0	chr9	87615952	87617604	2000235	0	-	L1AD208; RIP_L1_chr9_085_01	ATCTCCTATCCCCTTAGCTG	AACCCAAGAGTCACAGTTGA	LINE	L1	L1PA2	aattggtacaaactatttaaaaatttgactaagcatgcctgactccattgcaaagtgttttgaaactttatcaacatctggcccctatataagctaaggc<br>tttaatctttgaaataaaaaagtttttaggcattgagtagtaggtgagtggtcagccactgaaaagagtcaaagacctaaagattacacataacatacta<br>cagaaggaaaatacctatctaccagaaacccaagagtcacagttgagactatatcttaaatagtgggcatacaatagataataaatgtttcttgaatgaa<br>tgaaaaaaagtaacaaaagaaacaaaaagcaaacagaaagtattatgacaaatactgttaatcaagaaaagaaccaatgacaaacactca<font color="green"><u>AAAGACAAAA<br></u></font><font color="red">TTATTTTTCTGGTAAAGCAGCTACTTATGCTGTGTCACATCAGCAACCTATGTGTTAACATGTCTTAACTTCTAAAAGGGTAAAATGGAAAGGGGGAAAT<br>GCTCCTTTAATGACCCCTTGTTTGATCAGGGTAAAGTGCAAAAAAAGAGTAAGATAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTT<br>TCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCT<br>TTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTT<br>GTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTG<br>GGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAG<br>AAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACT<br>CAAACAAGTTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAA<br>CACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAA<br>AGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCACTGTGGAAGTCAGT<br>GTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAA<br>GACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGT<br>GGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAA<br>ACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTC<br>TGGGGACTGTGGTGGGGTCGGGGGACGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCACACCAGCATGGCA<br>CATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAACAATAATAATAAAAAAAGAAAAAAAAAAAAAAAAGAGT<br>AAGATAGTGCAGCCACTTCCCATTATATTATACTTTACATAACAGTAAATATT</font><font color="green"><u>AAAGACAAAA</u></font>aatagcactacttaatctgcagctaaggggataggag<br>atgaaacaactggaagggttcaatcatctgagctatgctatacttaaaaaaaaaatagccaacatatcaacacatcatctacttcaacagccttgacaga<br>aatctacatgctatgtcaaaaggtacaatgaccagtacttcagaagtagaagagaaggaaatgtaattttaaatgaaagaagggaataaaacttaatatg<br>aaaataatccccaatttgtaaatatgtctattattcatacacataccaaaatgaagaaagaaatgcatgggattactcactatgcttattttcctttcta<br>tagtttttactatttccccaaatattctacaatgactatatacatatatatat	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	1978	530	NA	intergenic	
0	chr6	127979778	127981411	2000236	0	+	L1AD230; RIP_L1_chr6_127_01	GCAATCCATAGACAACCAAT	AGGAGGAATATGCAAACTGA	LINE	L1	L1PA2	gtttttaaagtgaccggaatgacagcaagctatttagataaaaggaaataataaaaagtactcattgcaaaacaaggcaaaaagagagaaggcgataata<br>aagggacatacctctttgttgttgttagattcaatctaaacatataaaattagattaaacataaatgagttaaacatacaagttaaagtctgtgattgtt<br>tggataaaaaaattaagactcaattatatactgtaagcataagatagctgtaaacataaagacaggataattaggagattaattttgtgagaattccagt<br>ctctaaaattttctacttagaaatttaattttctgaaaataatagttcaaatatcagaatacaagacacataaaaagcattttt<font color="green"><u>AAAAAACTCATCTTTC<br></u></font><font color="red">GAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATT<br>TTGGCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTA<br>TGGTTTTAGGTCTAATGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCATCTTTCTACATATGGCTAG<br>CCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATT<br>ATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGT<br>CAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCGATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTC<br>CAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCAAATTTTCGCAACCTACTCATCTG<br>ACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACA<br>CTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATAT<br>CATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGG<br>ACTGTCAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTAT<br>ATACCCAAAGGATTATAAATCATGCTGCTATAAAGACACATGCACACATATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAA<br>TGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGA<br>CATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATGGCAAGAACAAAAAACCAAACACCGCATATTCTCACGCATAGGTGGGAATTGAACAATGAG<br>ATCACAAGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGAT<br>GACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAAA<br>AAAAAAATTAAAAAAAAATAAAAAAAATAAAAAT</font><font color="green"><u>AAAAAACTCATCTTTC</u></font>atggatttttaggctatatgtcctataaatgtaactctcattataaagtt<br>taaaaaataatttgtccaaacaaataattcacttcataatttttcattatttgatttgaacctcaggtgtggatgggcatctgtgaacagtttggacata<br>attattcagtttgcatattcctcctgaaaacagtccatagattctctgaataaagtggggcattacggtcgatttttctagtctgtgactatatgagtgt<br>tagttcttctccacagctcattggagccagtgtggtgtgcacaccaaacatagggaaactaattcagaggctacattctaccagaacaaacgtatctcca<br>gggcatttgtgttttgaaaatgatgcgtcatttt	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr14	50589959	50590339	2000237	0	-	L1AD240; 1664; RIP_L1_chr14_050_01	GTCTCAGACACACAAGCTCA	TTGGCCACTCATCTATCTTT	LINE	L1	L1HS	tctcctctgtataagtcataaatcatgctctcaaatgatgtcaatggttgggcgtggtgcaatacacctatagtccgagctgctggggagactgaggtgg<br>gaggatggtttgagcccaggagctccaggccagcctgatgagatcttgtctctaaaattttttttaactttttaatgatgtcaaaatgatttctaaagaa<br>agattaattctgtgacagcctctggacttcaattactaagttttaagataatcaattttaaaagttaatgttggccactcatctatctttagagatggta<br>gctgattaaactgataacatgctttattagtgattttaagacagcaaaaccattgtagattcactcttacccataatatatttcttttca<font color="green"><u>TTTTATAGTT<br></u></font><font color="red">AGTCTTTACTTTGGGCAATAATTTGTAATTCTTACCATCCATAAGAATACCTGTTCTGCAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCT<br>GGGGACTGTGGTGGGGTCGGGGGAGCGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAACATGGCAC<br>ATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAATTAAAAAAAAAAAAAGAAAATTAA<br>AAAGTAAAAAAAAATAAATAAATAAATGTAATGTTAACGCATAAAAAAAAAAAAAAAAAAAAGAATACCTGTTCTGATCAG</font><font color="green"><u>TTTTATAGTT</u></font>gagcttgtg<br>tgtctgagacattctcagagtgtgaactacaaactgatacaaactgagtactgaatgaacttttctgcatttgagttgaagcatctcctatcatgagtgt<br>gcactgactcatcttaggactcttaaggtttgataaatactgtgggaggacctaaaataaaactcattttattatcattaattaagtatttcataaatat<br>gaaataaaagtgctctgtgtaagacattttttaagattctttttgcgtttttcttttgtttttactctatagatagtaaaatgacaagttttcttctctt<br>ttttttttttttgaaacagggtctctctctgtcacccaggctggaatgcagtggcacaatctcggctcactgtaacctcca	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	540	222	NA	intron:TRIM9:NM:015163:1/10	
0	chr11	93713454	93714314	2000238	0	+	L1AD361; RIP_L1_chr11_093_01	GGAAAAATGACAGTCAGGAG	GCCTACCCAATGAATATCCT	LINE	L1	L1HS	catgcgtgggacagactcgtagaaacacggcaaagtcattgagaactaaattaaaaatttaaaccactcagtggccagtctgaatggcgcatacgtgaga<br>taaacctgaaacagcagagcaaagatttgaaaactgaactgagattgaaaccactggtcaaaatggaagagacagaacttgtaggctaaactgaagtgga<br>tcgatttcctgctaaaacgaaaaatcaacattctttacagaattataagggggttcaagtctaagcaacacaatattcaaaatggctaggatacaatcca<br>aaattatacgacgaacaaagaaccaagaaaatgtgacaaattttcaaggaaaaatgacagtcaggagatgccaacccaaggagggcccagat<font color="green"><u>ATTAAAAT<br></u></font><font color="red">TATCAGACTTTCAGTAAGCTATTATCACTTTGCTTCATGAGATAAAGGTGGTCTCACCTGAAGTAAAACACATGAAGAAATGCTCATCATCACTGGCCAT<br>CAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGT<br>GGAGAAATAGGAACACTTTTACACTGTTGTGGAACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAAT<br>ACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTA<br>TTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCA<br>TAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCAT<br>ATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGCGGGAG<br>GGATAGCATTGGGAGAGATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGT<br>GCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAACCTTTAAAAAAAAATAAA</font><font color="green"><u>ATTAAAAT</u></font>aaaaagaaagaaaacttgttaacagaggaaa<br>aaaaaaaactatgaaaaaagaaagggaaatttcaaaaatgaaaaataaaacgtgaaataggatattcattgggtaggctaaatagaatgtttatgacgga<br>gtacaagttagtaaacttaaaaatagatttttaaaaaaattagaagaacaaaaagaaaaaccttgacaaaaaaatagagatgtaggaacttacaggacaa<br>catcgaaaggtctaatatacatctcattggagtctaaaaagtacagaagaaagagaacatgacagaaaaaatatttgaagaaaaaatatacctgaaaact<br>tctcaaatttggtaaaaagcatcaacattcaggttaaagaagttcactgaaattcagagag	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	1031	149	NA	intergenic	
0	chr21	31134124	31136052	2000239	0	+	L1AD371; RIP_L1_chr21_031_01	CTAAATTGCTCCATTCCTTG	ATCACTGTAGGGTGATCCAG	LINE	L1	L1HS	gtcaatgagtcacttgtatgagtcttctaactttgaagctacccgtgctctccatctcaatatcttcacagggtgaatacagactgaggccaacagaaag<br>ataccaggaaatggtagctctcaaaaagcattattaaatacatttaactcagctatgtttctgaggccctatccacctgtcagagtaaaggttgtccaga<br>ataattatcctgatgatgctttttgctacaccttctctctaaattgctccattccttggttttatcactgagaaacatggcatgagctttaggcaggaac<br>tgagagatgtctcttggttcagtctagtccaagaatatgttttcccaattttccaaaaattgggggaaaaaactgattttttttaattc<font color="green"><u>TTAAAAAAAAA<br></u></font><font color="red">CAAAGAACATCTTTATTTCTGCCTTCATTTCGTTATGTACCCAGTAGTCATTCAGGAGCAGGTTGTTCAGTTTCCAGGTAGTTGAGCGGCTTTGAGTGAG<br>ATTCTTAATCCTGAGTTCTAGTTTGATTGCACTGTGGTCTGAGAGATAGTTTGTTATAATTTCTGTTCTTTTACATTTGCTGAGGAGAGCTTTACTTCCA<br>ACTATGTGGTCAATTTTGGAATAGGTGTGGTGTGGTGCTGAAAAAAATGTATATTCTGTTGATTTGGGGTGGAGAGTTCTGTAGATGTCTATTAGGTCCG<br>CTTGGTGCAGAGCTGAGTTCAATTCCTGGGTATCCTTGTTGACTTTCTGTCTCGTTGATCTGTCTAATGTTGACAGTGGGGTGTTAAAGTCTCCCATTAT<br>TAATGTGTGGGAGTCTAAGTCTCTTTGTAGGTCACTCAGGACTTGCTTTATGAATCTGGGTGCTCCTGTATTGGGTGCATAAATATTTAGGATAGTTAGC<br>TCCTCTTGTTGAATTGATCCCTTTACCATTATGTAATGGCCTTCTTTGTCTCTTTTGATCTTTGTTGGTTTAAAGTCTGTTTTATCAGAGACTAGGATTG<br>CAACCCCTGCCTTTTTTTGTTTTCCATTGGCTTGGTAGATCTTCCTCCATCCTTTTATTTTGAGCCTATGTGTGTCTCTGCACGTGAGATGGGTTTCCTG<br>AATATAGCACACTGATGGGTCTTGACTCTTTATCCAACTTGCCAGTCTGTGTCTTTTAATTGCAGAATTTAGTCCATTTATATTTAAAGTTAATATTGTT<br>ATGTGTGAATTTGATCCTGTCATTATGATGTTAGCTGGTGATTTTGCTCATTAGTTGATGCAGTTTCTTCCTAGTCTTGATGGTCTTTACATTTTGGCAT<br>GATTTTGCAGCGGCTGGTACCGGTTGTTCCTTTCCATATTTAGCGCTTCCTTCAGGAGCTCTTTTAGGGCAGGCCTGGTGGTGACAAAATCTCTCAGCAT<br>TTGCTTGTCTATAAAGTATTTTATTTCTCCTTCACTTATGAAGCTTAGTTTGGCTGGATATGAAATTCTGGGTTGAAAATTCTTTTCTTTAAGAATGAAG<br>GACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAA<br>CCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTT<br>ACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGGCCCAGCCATC<br>CCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTT<br>GGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCAT<br>GTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCACATATTCTCACTCATAGGTGGG<br>AATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATAT<br>ACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACATTGTGCACATGTACCCTAAAACT<br>TAAGAGTACAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>TTAAAAAAAAA</u></font>aaaacataaacaacaacaacaacaaaaaaacagagtttctctcttatcgcccaggctgga<br>atacagtggcgctacctcagctcactgtaacctctgcctccagggtttaagcgattcttctgcttcagcctcctgagtagctgggattacaggcaaccac<br>caccatgcccggctaatttttctatttttagtggagacagggttttgtcatgctgaccaggctggtctcgaactcctgacctcaggtgttacacccgtct<br>tggcctcccaaagtgctgggattacaggggtgagccactgcgcccggccaaaaaacaaacgaacaaaaaaaaaaaaccaaaaaaaaaaatcttttttaaa<br>acccaggttatcggagctcataaatgtga	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	55	2525	581	NA	intergenic	
0	chr2	134683188	134686600	2000240	0	-	L1AD10; RIP_L1_chr2_134_01;AC225996	TGTATTTACCGGGGATGAGG;NA	GCTGTCCCAAATTTCCAGAG;NA	LINE	L1	L1HS	aatcagcattctatgcccagtgaagctcggcattcaagctggctcacttacgccatcactcaggagacaagcaagtctcaaggtcttactgatatcttcc<br>ctctctctggaagataatagttggatacactggaactgaataatagaggattatctctggagaagtgcaagaatacaatgaagaagagggaaacagactg<br>aaagtatggggaaatccaacctcttcccaccattttccatggaaaactcgattcttgatttttcaggaagttggagctgtcccaaatttccagagagctc<br>tgatttaacattttcccaaggctgggcaagaggcaacccaaagatcaagttgatcattttacggggttttatgttgttatgtt<font color="green"><u>AAAAATAAGCCAGTTCT<br></u></font><font color="red">TATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATG<br>ACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAA<br>AGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAA<br>AAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAA<br>TCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACAC<br>AATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAAT<br>CTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTG<br>TGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCT<br>TCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACC<br>AAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTA<br>TCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAA<br>AAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCATTAAATTAGGTATTGATGGGACG<br>TATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGTACAAGAC<br>AGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAA<br>AGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTC<br>AGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCAT<br>TCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAAT<br>AAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTC<br>AATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGT<br>CAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCA<br>AAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCCACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAA<br>TGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAA<br>TCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAA<br>GGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACCGCAAAAGAAACT<br>ACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAAC<br>AAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACAT<br>GAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCA<br>GGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGC<br>GATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACAC<br>ATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCAC<br>ATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTAT<br>CGCAAGAACAAAAAACCAAACACCACATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGG<br>ACTGTGGTGGGGTCGGGGGAGTGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGT<br>ATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAATAATAATAATTAAAAAATAAAAAAAAAAATAAAAAAAAAA<br>AAAAAAATAAAAA</font><font color="green"><u>AAAAATAAGCCAGTTCT</u></font>atatacaatccctctgcccatccacctcctcatccccggtaaatacacaaaaacaaaagaggaagacaag<br>tgactgcaagtgacacaggggaagtgaggtctgggtcttcccatgcacaaggcctccttcatgctgatgtaacagaacaccaggaaaccctgctcccaga<br>acactggggaaaaacagacactgaccacaacactggggcatctccttattgattctctcggttatttattttccccagaggctgggagtaagataatgct<br>ttcctaaaacaaagaatatggtataaaaacaaaattttttagaagtccagccaagaaaggccacataggtgggtaaggtaatgttttattaaatgtttac<br>attccctagatat	UCSC;UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	3602;NA	172;NA	NA;NA	intergenic;intergenic	
0	chr2	119369800	119375838	2000241	0	-	L1AD14; RIP_L1_chr2_119_01	TTCTGCAACTATAGCCGTAA	ACAACAGACACAGAAGCAAA	LINE	L1	L1PA2	gactccgacatctgagatttggggttgggagacgcgactcagcccataacacaggctgttcttttcctctcagtgagaagatgtccacaggaaaacacat<br>gctaacttccactgcaagtgagagagaaggagcagatcagggagaagggaaggaagagaagaaggaaaaaggaaagatccctgggaggggcagggatgag<br>gcacacagccatccgcagagggcttcagtgggtgtgggcatcactcagctctaagggcccacccacccggacatcagggccaaatctacagacaacaaca<br>gacacagaagcaaagagagtccactgaagccacttcaggccaaggtatggtgccagcttgctgtgtgcagagggattggtggtaatga<font color="green"><u>AAGCCAGTGCCG<br></u></font><font color="red">GAAGGAGGAGCCAAGATGGCCGAGTAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCTCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCAAAGCAGGGCAAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGATGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAAAAACGGCGCACCATGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACACCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAAAGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGTTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTGCACCTCTAGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAATGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCAAGCAGAGGCATACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACGCCAAAAACCTATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCGGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCAGAATTTCATATCCAGCCAAACTTAGCCTTGTAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGGACAACCGGTACCAGCCACT<br>GCAAAATCATGCCAAAATGTAAAGACCATTGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAACTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCTCAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAATAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCAATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACACAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGAAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATTAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATAAAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCATGAAAATGGCCATACTGCCCAAGGTAATTATAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAACCCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCACAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAAGAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTCAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACATGTATGTTTATTGCGGCATTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACGCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAAAGTATAATAAAAAAAAAAAAAAAAAAAGG</font><font color="green"><u>AAGCCAGTGCCG</u></font>agaagtttacttacggctatagttgcagaagatattcataattaattgt<br>gtaggtttaagtgcttatgaaagtttatttataatcttaactgtagtccctgcattaggtttatcttaaacagaatcctaatttgggaacttaggaagat<br>atgcatcagctggtctgtttcaatctgggtgagctctgctcttcctgtgggctcttacggcctctacctgaggcgggcggatcacaaggtcaagagatcg<br>ggaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggtgcacgcctgtagtcccagctacttgggagg<br>ctgaggcaggagaattccttgaaccagggaggtgaaagt	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	6187	136	NA	intergenic	
0	chr16	59487890	59488202	2000242	0	+	L1AD20; RIP_L1_chr16_059_01	CATTAGCAAGCTGATTCAAA	CTTTTGCCATGATTAGTGGT	LINE	L1	L1PA2	tatactagcaaagaacatttgaagatagcatttacagcaggatcaaagaaacatgatatacttatgcataaatctaaaaaaagtgcataatgtatgctaa<br>aaattataaaacaatgatgaaaatgcaattaaagaatgtataaataaggagataattaaaccatgttcatgaattagaagacctaataatgggatgtcaa<br>atatcttcaattgatatatacaggcaatataatatgtgttcacctttatgtataataaaaatatcaacagaattcttatgaacattagcaagctgattca<br>aaatatttatggaaattcaaaaaacacagaagagttaaaatcattttgaaaaaagaataatattagaggactcatactatctgatt<font color="green"><u>TAAATACTTACTAT<br></u></font><font color="red">CGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGG<br>ACCGTGGTGGGGTTGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCACACCAGCATGGCACATGT<br>ATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATTAAAAAAAAAGTAAATAAATCTAAAAAAAAAATAAATAAATA<br>AATAAAAAATAAA</font><font color="green"><u>TAAATACTTACTAT</u></font>aaaactaaaaccactaatcatggcaaaagtctggacatacagatcaatgaaacaggatacagaattaaaatgc<br>tgacttataagtatggtcagtttgtatttcataaaagtgcaagagaaactcaatggagaaaatattgtcttgtaaacaaatagttctggataaactggtt<br>gttcacacacaatgttttaaaagtactgtcatattccttgcatgcaaatatttaaaaattaactcataatgcattagtgacaaacatgaaacctaaaatt<br>ataaacatactagaagacaatcatcatacaattaaattagtcaaaatattcttagatataacatcaaaagtagaattcataccataaaaattcaggttaa<br>ctgtacttcatca	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	55	474	147	NA	intergenic	
0	chr16	59467547	59471417	2000243	0	+	L1AD19; RIP_L1_chr16_059_02	ATATTGGCCAAAGCCTCTTA	TGGCAAGTCCTGAATGATAA	LINE	L1	L1HS	gggtgagcattgaaatcaatgtgtccattgaattatattcttcaaaaatattgtattaaatcaattatgtatcttatagttgatgccatcttagaattga<br>aattttaaaaaatcattcaagtccattaaatttttaaagccatatatatgctttatttttattatttaatttattattattcttttgagacggagtcttg<br>ctctgttacccaggcaggagctcagtggtgtaatcttggctcactgcaccctccacctcccaagttcaagcgattctcctgcctcagcctcttgagtagc<br>tgggattacaggcatgcgccaccatgccagctccctcagtttcttgaagtacatgggagtcatattggccaaagcctcttaaagt<font color="green"><u>AAAAGGAAAAAAAAA<br></u></font><font color="red">TTTCAGAGCCTGTTATTGGTCTATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTCGAGGAATGTATCCACTTCTTCTAGATT<br>TTCTAGTTTATTTGCGTAGAGGTGTTTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCGGTGGTGATATCCCCTTTATCATTTTTTATTGTG<br>TCTATTTGATTCTTCTCTCTTTTTTTCTTTATTAGTCTTGCTAGCGGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGATTCATTGATTT<br>TTTGAAGGGCTTTTTGTGTCTCTATTTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCTCTTGCTTTTC<br>TAGTTCTTTTAATTGTGATGTTAGGGTGTCAATTTTGGATCTTTCCTGCTTTCTCTTGTAGGCATTTAGTGCTATAAATTTCCCTCTACACACTGCTTTG<br>AATGCGTCCCAGAGATTCTGGTATGTGGTGTCTTTGTTCTCGTTGGTTTCAAAGAACATCTTTATTTCTGTCTTCATTTCGTTATGTACCCAGTAGTCAT<br>TCAGGAGCAGGTTGTTCAGTTTCCATGTAGTTGAGCGGCTTTGAGTGAGATTCTTAATCCTGAGTTCTAGTTTGATTGCACTGTGGTCTGAGAGATAGTT<br>TGTTATAATTTCTGTTCTTTTACATTTGCTGAGGAGAGCTTTACTTCCAACTATGTGGTCAATTTTGGAATAGGTGTGGTGTGGTGCTGAAAAAAATGTA<br>TATTCTGTTGATTTGGGGTGGAGAGTTCTGTAGATGTCTATTAGGTCTGCTTGGTGCAGAGCTGAGTTCAATTCCTGGGTATCCTTGTTGACTTTCTGTC<br>TCGTTGATCTGTCTAATGTTGACAGTGGGGTGTTAAAGTCTCCCATTATTAATGTGTGGGAGTCTAAGTCTCTTTGTAGGTCACTCAGGACTTGCTTTAT<br>GAACCTGGGTGCTCCTGTATTGGGTGCATAAATATTTAGGATAGTTAGCTCCTCTTGTTGAATTGATCCCTTTACCATTATGTAATGGCCTTCTTTGTCT<br>CTTTTGATCTTTGTTGGTTTAAAGTCTGTTTTATCAGAGACTAGGATTGCAACCCCTGCCTTTTTTTGTTTTCCATTGGCTTGGTAGATCTTCCAACCAA<br>AAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAA<br>GAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCT<br>TGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCC<br>TGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCA<br>GAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATG<br>ACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATT<br>CAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCA<br>GACGACATGATTGTTTATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATG<br>TACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATA<br>CCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAAC<br>ATTCCATGCTCATGGGTAGGAAGAATCAATATTGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGA<br>CTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGG<br>AGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGA<br>ACAGAGCCCTCAGAAATAATGCCGCGTATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAAT<br>GGTGCTGGGAAAACTGGCTAGCCATATGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAA<br>TTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGAC<br>TTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCA<br>TCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAAT<br>TTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAACAAACACATGAAG<br>AAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAA<br>ACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATT<br>CCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGATATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGC<br>ACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATAT<br>ACACCATGGAATACTATACAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCACA<br>AGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTG<br>TGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATAC<br>ATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGGAAAAAAAAA</u></font>aaaagactagttct<br>tcccaccactgtcacttatcattcaggacttgccaactccctgcaactttctcaaaaagtagtgcataacatttcttctttttgtaataccactaaactt<br>ctcattgttctttggacatactaaagacaagccagtttacagtgtatgccccaaattgtaattcattcttctcaaataaagcattttaattttatggatt<br>tgtccccctattttatttgacttttatagaagcctcaccagaaaccaatcttgatgcacctctatcttgaacttctagattccagaaaataaacgtctgt<br>tgttttgcaaaaaagaaaaaacaagaaaaagaaaaaagaaagaaagaaagaagaagaatattgcccaataa	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	55	3974	88	NA	intergenic	
0	chr1	197705367	197706856	2000244	0	+	L1AD75; RIP_L1_chr1_196_01	TTTCTCTCCCTCAAGCCTTTT	CCAAAATTCATGCTGGGAAC	LINE	L1	L1HS	aatcttaaattttacagactgtgagacggtcattgtcattgatagtaaattgaagaagagaaactgtcttgggcagtgtcttagtctgttcctgctgcta<br>taacaaaatacctcagactgggtaatttataaggcacagaaaattatttctcacagttctgggggctgggaagtataagatataggcactggcaggttca<br>gtatctagtgagggtctggttactcttccaagatggctgcttgttactgcatcctcacatgacagagggcaaatggacaaaatgagtgatttttctctcc<br>ctcaagccttttataatggcactagttccattcacacgggtagagttctcactacctaatcacttcctaaagtcctgcctctt<font color="green"><u>AAAAATATTGGGTCTCA<br></u></font><font color="red">CCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATAT<br>CTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTC<br>TGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGA<br>TGAGTAGGTTGCAAAAATTTTCTCCCATGTTGTGGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCC<br>CATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCATGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTT<br>CTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCT<br>ACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAG<br>ATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGCACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGT<br>ATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATC<br>TAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTT<br>TATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAA<br>TACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAA<br>CCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCG<br>GGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTA<br>ACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAATAAATAAATAAATAAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATATTG<br>GGTCTCA</u></font>gttcccagcatgaattttggaggaaaacaaaaattcaaaccaaagcaagaattcatttttgctatgttgaatttaagtcaattgtaagttgtt<br>ctgctgaaaagtataataattattagagcacaagtgaggtcaaagctgcattttattaagcaactattactgagcccttgcatgtgccaagaaaaggtaa<br>gaaactgggtacacagtggtgaaaagacagatatagttcccacccttacagaggttataatttgagataatagtctaggataagcacttgctaattacat<br>ttcaagaatgtgtcaaatgtcacagaaaagtcaaggtaaaaattaagacagagaatagcaccaaatttggcaatattaaagtcttaagtg	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	1636	129	NA	intergenic	
0	chr4	164877763	164878582	2000245	0	-	L1AD96; RIP_L1_chr4_165_01	TAATTAGGTAACGCCTGTGG	CAGGAAGCCTAAACTGCTT	LINE	L1	L1HS	ggcatgagggaaacagaagcccgaacccaaaagcactcatctttgttctgccaagtagttcaaatggccccaaagaaggttttggttctttggtggaaac<br>ttccaccataaactgagaaaaaccgatgtttactccaagtgcatgaaatcagattaaaatgtgtcctctacatttttctgttgcccacactaattgaagc<br>caatttgaaaagactctcctctagccccttctgaagcaacaagaataagaactgaaatatgtttgttaggaccagatctacaaggcagcctgccgatttc<br>agaagagcatataaccctaccatgtcctcttcaacgcatccaacatccagaccaccaggaagcctaaactgcttccggaagcaatt<font color="green"><u>GAAAAAAGCTGCGA<br></u></font><font color="red">ATAGTGCCGCAATAAACATACGTGTGCATGTGTCTTTAGAGCAGCATGATTTATAGTCCTTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGG<br>TATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCT<br>CCACATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTC<br>TGATGGCCAGTGATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCAAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATAC<br>ACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTGTCGCAAG<br>AACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTG<br>GTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACAT<br>ATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAATTAAAAAAAATAAATAAATAAACTAATATGTGAA<br>AAAAAAAAAAAAAAAAGAAA</font><font color="green"><u>GAAAAAAGCTGCGA</u></font>gcgctgataagtgacttaaataaatgagaatagccacaggcgttacctaattaaaagacacttaga<br>caccaggtctctactttgaggcctggcaaacaaatgagctttcccttacacatttctggctttgctccatcaatcttagttgatggtagaagtttccctc<br>agagatcctgaatgtgttagggccatcataaatttattaggcttttcactttggagtattaagggagaaaactaaaaaatgatatggaatttaaaaagta<br>tgaagacagtatattttatgcaagactttatttttaatgaaaaagcatttctgactcacaggtgtaaaataactatctgttgactgtaatagaataaaaa<br>catacttggtgaatacttta	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	932	98	NA	intergenic	
0	chr5	132946880	132952889	2000246	0	+	L1AD101; RIP_L1_chr5_132_01;AC225583	AGTCTCCCTTTCAGAAGCA;NA	AATGCTGGGAATCTTACCTC;NA	LINE	L1	L1HS	ggcagctctgaccactcactagccatggccatcccatagcgcaggggtgctcatccacctagatgaaaggggcatactctgaaggagccaccacagctca<br>accaatctttagtactcagtgtgcctgggggtgcctgacacttccacctctaaggaggaggctgtccctccatggcagcacctccagcagaagtacatga<br>gcttgcctctggcctcatctcagcagcagccctgctgctgtctccagcggccagtggaagagtcagcaaacaccagcacattcccactgggtttcctgac<br>cctccaaaagcccttcacagtaaccacagttggtatcacagtaaccaacttggctgccaatgctgggaatcttacctcctcctt<font color="green"><u>AAGATCAAGGCCCCAG<br></u></font><font color="red">GAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCG<br>GGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGC<br>GCAAGGGGCCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACC<br>GGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGAT<br>CAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGC<br>CCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAG<br>TGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCC<br>CTGACCCCCGAGCAGCCTAACTGGGAGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAA<br>CTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGA<br>ACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAATGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTT<br>TGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAAT<br>TTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAA<br>GCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAAT<br>AAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACC<br>AAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAA<br>GATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGGAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCG<br>GGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTTGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAA<br>GAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGCTGAGAGATT<br>TTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACCTGGAAAGGAACAACCAGTACCAGCCGCTGCAAAATCATGCCAAAATGTA<br>AAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACT<br>TTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATC<br>TCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTC<br>TGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTA<br>AACATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACT<br>TTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGA<br>CATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCT<br>CTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCC<br>GCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGACAGAAATAAAGATGTTCTTTGAAACCAACGAGAA<br>CAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCC<br>AAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGTAAACACATTCAAAAGCTAGCAGAAGGCAAGACATAACTAAAATCAGAGCAG<br>AACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAG<br>ACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGA<br>GAATACTACAAACACCTCTACACAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAG<br>TTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGA<br>ATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCC<br>AGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCGAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAA<br>TACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATATGCAAATC<br>AATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTC<br>ATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGC<br>AAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAACACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAAT<br>CAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATT<br>GTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACA<br>ACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGACAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGA<br>CCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATC<br>GTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAA<br>AGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTA<br>CAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTAC<br>AACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAA<br>AGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATCCAAGGTGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGA<br>AAACCTAGGCATTACCTTTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGAT<br>CTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCAACAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACGCATCTG<br>ACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACA<br>CTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATAT<br>CATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGG<br>ACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTAT<br>ATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAA<br>TGTCCAACAATGATAGACTGGATTAAAAAATGTGGCACATATACACCATGGAATACTATATAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGAC<br>ATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGA<br>TCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATG<br>ACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGATCAAGGCCCCAG</u></font>aaccttgcttctgaaagggagactgctgtggtcaacccttaggaacttcccaaggccaattcttaaaagcagaaa<br>cagagaccaccaaatatcacacacttagtcctccacccacagacactgccctcactgtcccatgtgagggcagtagctgccaagtccccagtggaatcct<br>ggaagaagtgcaaggaaatagccaaaggaatgttaatatgttaattctcagaggttcagtggctgcctgatggtgaaagaagagaaattgttggggagga<br>gggggaataggggcagaactcatctctccccacagaaggtcaagaggccacccaccgcccagccccagaagaccacctcaaactctgctgccctccagga<br>ggaggggat	UCSC;UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	55;NA	6091;NA	66;NA	NA;NA	intron:FSTL4:NM:015082:2/16;intron:FSTL4:NM:015082:2/16	
0	chr5	132961998	132961999	2000247	0	+	L1AD102; RIP_L1_chr5_132_02	GAATGGGGTGTGCTGTAA	TTTTAACAAGATCCCAGACC	LINE	L1	L1HS	ctgcttgaaaacaggtgcaaatgaccctagaaccaaggttgtttaagttcatctttcccatcacctacctgcccactaagctagtctcatcaagctattt<br>tccagcatgactgcagcctgcccatttctctcctttccctgactgtagtcagcatcatgtcagcaagaactaaaaaaaggccagagtcaatccaactggg<br>attctccttgtgtgtgtgcatgggaggaggcagggggctcctctaaggcttttctgcccagtgtcccccaggatctgaagtatcagcatcacctggagct<br>cagaatcttgggacccacctcagatttgctgcattagaatctgcattttaacaagatcccagaccgttcacaagcacattgcatctc<font color="green"><u>AAGAGGTGCTGGC<br></u></font><font color="red">CATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACAAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCA<br>CCAAGCAGACCTAACAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGACAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAAT<br>TGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTATAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAA<br>GACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGCTTACCAACCAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>CAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTG<br>GTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTT<br>TATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGACAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTA<br>GGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGG<br>AAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGA<br>CTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCCTGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATA<br>ATGCCGCATATCTATAACTATCTGATCTTTGACAAACCTGACAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGC<br>TAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAATGTTAGACCTAAAACCAT<br>AAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAA<br>ATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAAATTTTCG<br>CAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAA<br>GGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAA<br>ACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTT<br>TACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCAT<br>CCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACT<br>TGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACGCCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCA<br>TGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGG<br>GAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGCGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATA<br>TACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAAC<br>TTAGAGTATAATAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGGTGCTGGC</u></font>acaggttacagcacaccccattctgcaattgggaatgggttcatcccaatgcccctg<br>agaccttgggaggttctgccaccatcatttgccttgaaaattataaatgtactgataacgtctataggtgggaggttgtgccctcccagttgtacctgaa<br>aaatgaatatccacatcctctgactcagaataatcagcagaaagccctggctaagtgttaggggcccagagaagtggcccccacgtcaaccagcacagca<br>cctgcagaggaagttctggatccttttgaaaggagtacgtggttcggttatcccagggctccacggccctggggagaccattctcgcctcttgctgagag<br>accttgcccagggtctcatcttctttgaaa	Other	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	3721	78	NA	intron:FSTL4:NM:015082:2/16	
0	chr18	46165012	46165272	2000248	0	+	L1AD125; RIP_L1_chr18_046_01	AAACGGTGAAGGAAATGTTG	GACATGAGCAACCATCAGGA	LINE	L1	L1HS	ataacaggtataagaaatattacaggtatttcttatacttgttattatgtgtagttatagcagccccctactgtttcttatatctggtgtcgtctttcct<br>atgtcttgacttgctgctggcaacatccctggcagttaaggaacctagaagctatagtgtgtttctagactttgttgctagtgggacaggagctatatta<br>gtcggcttctcactcgctgtaaaaattgggcagattgaatccaggggtgacccatgatcattgctggcaactaaaatgactccgcaatacacagggactg<br>acatgagcaaccatcaggataaattagaataaatagaagtctaagataactgatgtttccagattcagagttagggacgtcagg<font color="green"><u>AAGACAAGCTGTTAAG<br></u></font><font color="red">GGGTTAGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGAT<br>ATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAA<br>CTTAGAGTATAATAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAA</font><font color="green"><u>AAGAGAAGCTATTAAG</u></font>ccgtaaagctgttaacttactga<br>ctttgaggagctggtgggacaactgatgaagatatcatgttacacgtaaataaatgtagctatattactgaagatttgggaacttaatttttcaacattt<br>ccttcaccgtttaatgttcatgaacaatagacatagggatagaaaaaaatgttggcaataagattataacaggatgagttacgtatttaatattattttc<br>agttgggaaaactgtcagtatgctgcttatttctgaaaattgcctgtatgtatgtacatctgtattctgtagtgttaagggatcagatcttgatcctgaa<br>gaaccaatcaaagttgaagaacctgaacccgtaaagaagcctcccaaagagcaaagaagta	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	513	236	NA	intron:C18orf24:NM:001039535:4/7	
0	chr3	7322034	7322322	2000249	0	-	L1AD160; L1AD176; 2363; RIP_L1_chr3_007_01	AGAGCTACATGGCTAAATGC	TCTGCAGTTTTAACACCTCTT	LINE	L1	L1HS	attaaaataaacagaactccatgtgaaacatgaaaaatttataacttgtgtatgattgaaagtattatatatacataatcaggacaatgggagcaaataa<br>aagaaaaaagggaactagctattaatgaaaaagttattgcaatagtacttttggaagaggggattgatgagatgtaactgcattggtagatcagaaaaag<br>ctacaactgaagcccctttggtgggtaagaccacaggataagtggtttgtttgtctcttgggacttgggagtatcaggcaccacagagctacatggctaa<br>atgcaggaagattgggtcaaagattgtgaataagctgacaaaggccagttctacttttttttcttccaggcaggaaatgacagttttct<font color="green"><u>AAAGAAAAAAA<br></u></font><font color="red">TCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGG<br>GAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCG<br>CACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTATCCTAAAACTTAAAGTATAATTAAAAAAAAAAAA</font><font color="green"><u>AAAGAAAAAAA<br></u></font>aaaaagcagcagcataggaaataggttctgatattgtaaacaccaaaatagtaaaaggtggataagagatggtaacaaaaaaacaccaaaatagtaaaag<br>gtagataagaggtgttaaaactgcagatggggatgggagggaatgactaaaagtcagtataatagaaattgaaatgttaagacactctaggaattttaaa<br>cttctgctcacaaaatgctgggaactaggggtttgtcaccccaggtagaaaataatttttctgtaaaaatctgatacatatcagaaagtagactctagat<br>attgttataaagaagtcctctgatggaatggccaatctgattccctgggaaccccatcagttgtcatgcactgcccgtgggcacagagc	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	543	238	NA	intron:GRM7:NM:181874:3/11	
0	chr3	136156607	136157245	2000250	0	-	17693; L1AD186; RIP_L1_chr3_136_01	ACTTGAAATTGGGGTAGATG	ATTTTCTAGAGGGCTCCTTG	LINE	L1	L1HS	tctaacagccccagcctcctccccttcctccctgcagtccaacttcagctaaagcaatattttaggctacacagtagagagagagagagagtctgctgag<br>agccaactcggcctccctggcacaggaagagccaggctgcatgggacctacacagagaatagacttagccaccaacctcagcagggaagaggggagaagg<br>gaagacaaagctatgatttctcattaatcctctacactatgagcataacttgaaattggggtagatggggcattttcctagtaattaacaattttataaa<br>gacaaatgcatgatgaggtcagagtcactagtgagatgaggtcagcaggccaatgtgactctgcctgatgggaccagcctgtgtgt<font color="green"><u>AAAGAAAGGATGTC<br></u></font><font color="red">CCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAGTCCTTTGGGTATATACCCAGTAAT<br>GGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAAATGT<br>CCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACAT<br>GGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATC<br>ACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGAC<br>ACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATTAAAAA<br>AAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAAGGATGTC</u></font>aggaacaggccttaggccaaggagccctctagaaaatgcatgagccg<br>cttgccacacatcctaatgcgcaagttctccccatagcttcctctactcccctctcacctgttctcttctcaccacccacgctcttcacaacagaaacag<br>ctctaggccaggaccactctttgctggctgtgctgtctaattggtctccaggtgcctctgcacagccaagcgactggtcaccacgactttgacaggagac<br>ggtttcacagaagcaaagtgaaagccaagaaaatacagttccctggccataatgaaagtctgttctgtttccatgcaggaaaaatagcatggaaccagaa<br>gcggagagattattctttctgccaccctacaaagtccca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	843	190	NA	intron:EPHB1:NM:004441:3/16	
0	chr14	80538881	80539180	2000251	0	-	2035; L1AD213; RIP_L1_chr14_080_01	GCCATAAACAGAAAACCATT	GTTGCAGAAATAACAGCACA	LINE	L1	L1HS	aaacagcgtgcaccattctgacattacaatgggggaattggtagtgcccaggtcaagtggtggggctggacacaggaggcaaataggaaatgtagtctga<br>agcacaaggaagaggtcagggctaatgataaaatgtggcagtcattattatccaggtgatagctgacactttaaattggatgagatttttctaaggagca<br>tgtgtactgtacaaaaaggacaaaggatgaaacacctggggaggtcaacctttaatgagcgagtcaccggagcagtagaatgaaaatgaagtagaaggag<br>aactgagtctatttgtcacagaaatattatatgttgcagaaataacagcacaaaagaaactaaacagcagtcttttaaactggcagtt<font color="green"><u>AAGAGGCATTAG<br></u></font><font color="red">CAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGG<br>GGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAA<br>CCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAATAAAAAAAGAAAAAAAAAAAAAAGATAAAAAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGAGGCATTAG</u></font>ggaccttaatgagagaaattaccatggagttgagaaataggatagcaaaccagatttcagccagttgaagagtagtcaatggtaacta<br>atgacaaatggttttctgtttatggcatgagtggaagaaaatggatagagggttaactatggagggaatagggcgaagagcagggattttataattggga<br>cattaggtaatatttttgggtagagtgaaggattaaggttgatgataatagcaaacctatagtgcttactatgtgctagagattactgtaagcactttac<br>atagattaactcaattaaatcttcacaacaacattgagataggtaatactattatccctattttacaaatggggaaactgaagcacagacgggttaagta<br>	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	494	182	NA	intron:TSHR:NM:000369:1/10	
0	chr7	93254878	93260927	2000252	0	-	238587; L1AD219; RIP_L1_chr7_093_01;AC207446	AGGGAATATTTGGGACATCT;NA	CCCCACCACACTAGAAACTA;NA	LINE	L1	L1HS	tactttcaatggcaaaaaacaaaattacatttacaccaatctaataaaaagatcagtcgctgccaggggttaagggaaaataacagaggatttttaggac<br>atcgaaaatactctgtataatactataacggtggagatataagttgtccaaactcatagaatgtacaactccaagagtgaaacctaatataaattataca<br>gtttgtgtgataatgatgtggttcatcaattgtaacaaatgtacactatgatgggggatgttgataatgcatcagaggaggcagggaatatttgggacat<br>ctctataccttcctcttaattttactgagaacctaaaactgctctaaaaattagtcttaaaaatcaatcccatctatctttaattc<font color="green"><u>AAGAATGATGATTA<br></u></font><font color="red">GGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGTCGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>GCCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCTCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGGCCGGCTTAAGAAACGGCGCACCACGAGACGATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATGTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACAAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTACGTAAACAAAGCAGCCGGGAAGCTCCAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGAACCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAGGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAATGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGAAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATGGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAACAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAACTCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCAAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATGCTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACTGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTACACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACCGTCTGATCTTTGACAAACTTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAGTTTGCAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGTACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCACATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAACTGAACAATGAGATCACATGGACACAGGAAAGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTTCC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAATTAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGATGATTA</u></font>aattggaatgtattatattgtgagagacacatggag<br>gaaccatattattcatctcatcctatctagctatctatttatctggtgtatatagttaatatatctattgtgtattaataaatgtatagtttgtattata<br>tataacatatagtatatatatttattatgtatgttagtatatggtagacattttccatacatatgtaatttgactatatatagtttctagtgtggtgggg<br>actgtggggggcagtaagatacgtggttattgctcacaaggagcttataggtaatcaaggagctggagataggcataaatgaccataatatctatagaaa<br>gaacgttatgtataaggtatgcaaataaaataatgtggagataagaatca	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	6418;NA	354;NA	NA;NA	intergenic;intergenic	
0	chr1	236918941	236919873	2000253	0	+	L1AD232; RIP_L1_chr1_235_01	TCCCAGAACTACCTCATAACA	GAGGAAGACAGTGTCACAGA	LINE	L1	L1HS	gagctttcaagtcacagaactctggagaagaggaagatcgctgcatggatcaaggtataagaatgtcaatatttttattaatgtggattaaataattaca<br>ttgaagatgcattttaatgggcaacacaaataacttttatatgttccattaaatacattattcaacttctgaaacagtgattgctgtcaatatcactttc<br>tattttgaaatattggcatgccaactttaaatgtgcctattttgtatattcccagaactacctcataacattctatggatatttacatctcttatattgg<br>gaaaaataaactaatttacattcttatatgttatattccgccgttctatctgttatattttatattctgcctatatatgctttttatatt<font color="green"><u>AAAAAAACTA<br></u></font><font color="red">GTTTTTTTTTTTTTTTTTTTTAGAGGGTGTTTCTTTTTTTTTTTTTTTTTAATGTTTTTTTTTTTGTTATCATACTCTAAGTTTTAGGGTACATGTGCAC<br>ATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAACGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCT<br>CCCCCCTCCCCCGACCCCACCACAGTCCCCAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGGGCTAATAT<br>CCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGA<br>CATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTT<br>AGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTC<br>AACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTA<br>TAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATA<br>GACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGG<br>AAACCATCATTCTCAGTAAACTATCGCAAGAAC</font><font color="green"><u>AAAAAAACTA</u></font>cttttacaaaactgatacagttagtggtcaagtaaaatcaaatatagctctgtgaca<br>ctgtcttcctcacaactttcttttctcctgaaaaatttcattgagcatataaaagtatttttaaacactcagatttttagtttttcatatttctgcaaag<br>gagaacatttctgctggtgataaatagatcttaggtggaatctctctatgagatctgctgcaggttaagcatctctggatttcctccacaaaagtgatga<br>gagaaacaacaaagagaatcagggatagaagagagtggctactgatcactgcccttaaccttctttttcccctagaacataaacaaacactcatattatt<br>cttcaattagttgcaatgacactaagaggtaat	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	1162	219	NA	intergenic	
0	chr14	39168161	39169964	2000254	0	-	52553; L1AD251; RIP_L1_chr14_039_01	CTGTGGAGGAAACATTGAAG	TCACACTCAAAGACTCCTTTC	LINE	L1	L1HS	aggcagttttaggcaaaagttaatactatatttttaaaaattagggtacaaaagcatgtgcaaattttacaaattaataaattatatatgttagtacaca<br>catgtatacatgaacatgtgtacatacaaacatatacaaaggatggaataaaaagcaattctctctggttattggaattataagtgattttattctaaat<br>attctctaaaataaatccaataaaaaatagttattttttatttattaaaaaaaaaatctataccttaacagtgacctaaaataaaattctgagagctgga<br>aaaggttttcagttttcattaccagatttcatttttaaagtaggttaaactcataataaaatcacactcaaagactcctttc<font color="green"><u>AAGTTATTTCAGGACTCT<br></u></font><font color="red">TTTTTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTG<br>TTTATCTGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGT<br>GCTGCTGGATTCTGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCC<br>CGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGT<br>TCCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTATTGCCACAATTTCAGAGCCTG<br>TTATTGGTCTATTCAGAGATTCAATTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTCGAGGAATGTATCCATTTCTTCTAGATTTTCTAGTTTATT<br>TGCGTAGAGGTGTTTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCGGTGGTGATATCCCCTTTATCATTTTTTATTGTGTCTATTTGATTC<br>TTCTCTCTTTTTTTCTTTATTAGTCTTGCTAGCGGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCAAATGGGATCTAATTAAACTAGAGAGCT<br>TCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAG<br>AATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATT<br>TATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAA<br>TGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGAAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACC<br>ATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAA<br>TCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACT<br>GGATTAAGAAAATGTGGCACATATACACCATGGAATACTATACAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAAC<br>CATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAG<br>GGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGAAAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAG<br>CGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTATCCTAAAACTTAGAGTATAATAAAAAAATAATAATAATAAAAA<br>AAAA</font><font color="green"><u>AAGTTATTTCAGGACTCT</u></font>gtctgctttgttgaaattgaatttatttatgttaatatgtaaatgtgccattcaattgttccaaagcataatctagat<br>ctaagatttttcaaagccattggctaggttgcatatcttcaatgtttcctccacagcattttgaacatagcaaacactcaatgaatacacaccacataag<br>ctgtgttggtagtttggccccaagtcatcatgtcccttggtttattaaaagcatacccactcctcaacactttgttccatgagccctttaagcaacctct<br>gttagagacagtgaaattcataaaaatagcatctgattgtgtattctgagaaaaactggacattagctaagaatggtgttgcataaaaattttcctatgg<br>tgtt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	1995	172	NA	intergenic	
0	chr14	82705607	82706236	2000255	0	-	238908; L1AD253; RIP_L1_chr14_082_01	TTGCCTAGCTTTTCTACCAG	TTCAAGCTACCTTCTCAAGC	LINE	L1	L1HS	acaggtgcccaccaccacgtttggctaaattttaagatatttttagtagagacagggtttcaccatgttggccaggctgttcttgaactcctgacctcag<br>gtgattcacctacctcagcctcccaaagtgctgggattacaggcattagtcattgtgcctggccttgtatacatatttcaaaacatcatgttgtacgaaa<br>aggccctgcctaggtaataaggctggtgtggagcggacattacaaacagaaggaaaagaaaaagacaaaggcatgcaggcatgaattagctgggtaaatg<br>caaaggaacttcaaagaattcacactaaggataagctaacaacatggtgcttagtaaggccatagacttaggcattggcctgg<font color="green"><u>AAATAAAGGTCTTTGGA<br></u></font><font color="red">ACACCACATACCAGAATCTCTTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTAT<br>ATACCCAAAGGACTATAAATCATGCTGCTCTAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAA<br>TGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGA<br>CATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAG<br>ATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGCGGAGGGATAGCATTGGGAGATATACCTAATGCTAGAT<br>GACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAA<br>AAAAAAAAAAAATTTAAAAAAAAAAAAAAT</font><font color="green"><u>AAATAAAGGTCTTTGGA</u></font>gcttgagaaggtagcttgaagcttatcttgtatgtaaaacactgaagagcctt<br>tggtgtggtctgatttgaatttaagaataatttacatagaaatacagaggatggaaaaaataaagctgcacagctggaaacttgcaattatttacataaa<br>atcatcatcactaatatttccataacattaagtatatgccaggcaatttctaggtgatttacaagatttactaatttacaagaggaggatatgaaacaga<br>tatgtacatatgtaaatgaaaacatgtttcccatatcatatggtaatattagagaaattctaccagtagataatgttgcctcccaagagaataatgaatg<br>gggcacattaccgtgataaaagcaaccaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	1369	726	NA	intergenic	
0	chr14	28797801	28798553	2000256	0	+	L1AD255; RIP_L1_chr14_028_01	TCATTGTTCTATCCATGCCTTTT	GTAGGTTTGGGGCTGGAAAT	LINE	L1	L1PA3	agatataccattttcattgcatcatgtcatggcacatactgtcaacacgatttatcactgttgatgtttaccttgatcatcaactgaggcagtagttgtc<br>aaatttctccactgtaaggcagctacttttattcctttctatactatatatttttttgagagtccctacgcatagccctcactttaaaactagagaattg<br>tgctcctatcgtcttgagagtaaagcagctacacaaattatttggtattcttctgcaaggaagatttgtttttgttccaccatttctttacttattcaat<br>aagtgaagatttatgcatatttattttatattttggttaaaattcaatgctactttatttctttgctcattgttctatccatgcctttt<font color="green"><u>GAGAATTCTTT<br></u></font><font color="red">TTTTTTTTTTTTGTTTTGCAACTAATATTGATTTCTTTTTTATTTTTATTTTTATTTTTATTTTTTTTTTAATTTTTTTTTTTTATTATACTCTAAGTTT<br>TAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAACGTGTCATCTAGCATTAGGTATATC<br>TCCCAATGCTATCCCTCCCCCCTCCCCCGACCCCACCACAGTCCCCAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCAC<br>CTATGAGACATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACA<br>CTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCA<br>TTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGA<br>ACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTC<br>CTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGC</font><font color="green"><u>GAGAATTCTTT</u></font>ccattggatcctgtgtctctttgacagacccccacc<br>agtgtgtatttatgtatgtatgtatgtgtttgtttgtgtgtatgtgtgtatatgtttaaccctttcatgcttttggtgctatgagattatccaggtgcat<br>cgtacatatttccagccccaaacctacaattagtcatttatctatggaactctgattccttctagtggaaaattgtattagtaattaagatctgggtact<br>cagtgtacacttgtccaatgaaatgtcatttttaggcactctcagctgacagaacaaagaaatatatctgtgaattctaatccatgtatatacagatatc<br>tataaacattatcacctgtacctatattaagctaaacttatactgatgtctcc	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	55	961	197	NA	intergenic	
0	chr20	41458027	41459206	2000257	0	-	L1AD264; 31073; RIP_L1_chr20_041_01	GGGGAAGTTCCTCCTATATT	AAATGGTAGGTTGGTTTATCA	LINE	L1	L1HS	atttgatctgatgaaaactgagatctttttttaaaagaaagtcttttgtttttttggggggggggaagacaaaactacattttaaaaatggtaggttggt<br>ttatcaacaaatctctatttaagaaattgaatatggaactgattatacagctggcaaaaccctcactatttcgacacattctgagatggtctaatttagt<br>gaaaggtctggatcagttggaagccaatgattttggagctctgactggcttcattacctttgactcagaggaagccgagaaactgattccttcagtgacc<br>tccagagtcaagagaaacttatcccaatgagctgataaagacagtttcttaacatatatatatttattcatttttcttttat<font color="green"><u>AGAAATGGGGTTTTACCA<br></u></font><font color="red">ATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCA<br>AAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAA<br>CAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAA<br>AAAACAAACAACCCCATCAAAAAGTGGACGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCAT<br>CATCACTGGCCATCAGAGAAATGCAAACCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGACAATCATTAAAAAGTCAGGAAACAACAGGTG<br>CTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGAT<br>CTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGT<br>TTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGA<br>ATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAA<br>ACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTC<br>GGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACT<br>AACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAACATTAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATGGGGTTTTACCA</u></font>tg<br>ttgcccaggctggtcttgaactccggtgctcaagtgatcttcttgcctcagcctcccaatgctgggattacagatgtgagccaccacgcccagcccaaag<br>agagtttctaattagcagatcaatttcaaaatattaacgacttcttaagtttttctctgtttgtaatataggaggaacttccccatcggtggcctggtcc<br>ctttggtgtttgcacagttgaggaaagagtcttaaccctgccccacaaaacccatggtcaccaccacacatatgatatactgatgtggaaactgaggctc<br>agggggagggagtgccttgctcaaggtttcaaggctgaactgtggctggaacacatctccttatgactcccagtccagtg	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	1699	501	NA	intergenic	
0	chr10	29752161	29752724	2000258	0	-	L1AD290; 3429; RIP_L1_chr10_029_01	CCATGCCTCAACATCTCA	ACCTTCCTTATCTTCCCTTG	LINE	L1	L1HS	gtgagatagtgtttgttgtttcaaacgacgatttaagttttgaagtaatttgtatgcagaaatagataactattacaaagtccatgcataaaagttctta<br>agtcatgttatagttgttgaaaccaaggtatcaaaagaccaaatgtattttccatagtcaaccagggaagcagtgacaaaacaagaaatggagtttagat<br>gccagttgattcccagacttattctctcctatataaaggttaatgacattttgcatgaaataatgctagtagaacccacgaggttgttagccatgctacc<br>ttccttatcttcccttgactttctttttaaatctctttatagagtaaccgttgagcactgagccttttccccagaaatattattttttt<font color="green"><u>AACAATGCATC<br></u></font><font color="red">CCTGTCTTGTGCCAGTTTTCAATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCATATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACAATGCAAC</u></font>tttgtcttttctaaaacaaagagat<br>tccaggcattcagtgtgcattctaaaaagtgagatgttgaggcatgggaggaaagtgactttcaaataagcacataatgatcaagtaatcttctctctac<br>ctttcatgctgagaacagtcacaaatatttcattcctgagaatcttgttcccaaattgacaatgcttcaataagcacctttttgtactttcttcttaatc<br>aagtagaaagaaaaaacatcataaatacaagaggggtattttcccttctactcaaagtgtgtagccaggagccccagcattctttccacagagagatagt<br>atggttctaaactatcacttaggcgactgagcacagtatttggatagaaggatgctttgtatca	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	750	175	NA	intergenic	
0	chr6	51847541	51853559	2000259	0	+	L1AD310; 237948; RIP_L1_chr6_051_01;AC226759	CAACACACGTACAGGTATGC;NA	TTAGCCTCTGTCTTTTGTGC;NA	LINE	L1	L1HS	cacatgtctttcttgtatatttaagtcattcgtactgaaaattattctattcatctcaatacaaaggtaacattggctgtgagagtaccaacacacgtac<br>aggtatgcttaaaggaaaaaaattccttctgatgataaaaagttcttccagaaagtaatgtttattttaggatgtgactcacagataattgtatgccacc<br>aattatatatgagtggaaagtctaacaatggacaggccaaattctttaaaagtcttaattcctggccaggcgcagtggctcacgcctgtaatcccagcac<br>tatgggaggccaaggcgggcggatcacgaggtcaggagattgagaccatcctggctaacatgttgaaactccgtctgtact<font color="green"><u>AAAAACACAAAAAATGAGC<br></u></font><font color="red">TCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGT<br>GGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGA<br>GTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCAAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACT<br>ATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACGGCAAGGCGGCAACGAGGCTGTG<br>GGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCTGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGC<br>CTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAG<br>CAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGG<br>CACCCCCCAGCAGGGGCACACTGACACCTCACACAGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGA<br>AAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTG<br>GAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAG<br>AGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGT<br>ATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCC<br>GATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGA<br>GCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAAC<br>ACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGA<br>GAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAA<br>AGGAAAGCCCATCAGACTAACAGCGGATCTCTTGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTT<br>CAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCA<br>GGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAG<br>ACTAGGAGGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAAT<br>GGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAG<br>ACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGA<br>CTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTGAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCA<br>CCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCAC<br>TGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCAACAGAAC<br>TCTCCACCCCAAATCAACAGAGTATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAA<br>TGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTCCAT<br>GGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACAAGAACAAAGACACCAC<br>ATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACC<br>CTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACGAAAATCAGAGCAGAACTGAAGGAAA<br>TAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAA<br>AAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAA<br>CACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGA<br>ATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAG<br>GTACAAGGAGGAGCTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTG<br>ATACCAAAGCCGGGCAGAGACACAACAAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACC<br>GAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAAT<br>CCAGCATATAAACATAGCCAAAGACAAAAACCACATGATTATCTCAATAGACGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACT<br>CAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCA<br>TTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGG<br>AAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAA<br>TCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAAAAACAGACAAACAGAG<br>AGCCAACTCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGA<br>ACTACAAACCACTGCTCAACGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCAT<br>ACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCTTCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAAC<br>CAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAA<br>CCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTT<br>TGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAGGCTGAAACTGGAT<br>CCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTA<br>CCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTCAA<br>GAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGTCTAATA<br>TCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAG<br>ACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGT<br>TAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTT<br>CAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACT<br>ATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGAT<br>AGACTGGATTAAGCAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTG<br>GAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACA<br>GGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGG<br>TGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAATTAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACACAAAAAATTAGC</u></font>caggcgtggtggcaggtgcctgtggtcccagctactcaggaggctgaggcaggagaatggcg<br>tgaacccgggaggcggagcttgcagtgagccaagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaagaaa<br>gtgttaattcctaaaggaatggcaggcacaaaagacagaggctaaaatcagagtcccataaccacagaggtcaggaaccctctttttctttctttttttt<br>tttttttttctttttttggaacaactgacacctggcaacatagtggttcccaaataaatctgaaaaatactgtgctaagtaaagattaatagattttttt<br>ttgcttgttcactttaatg	UCSC;UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	6557;NA	519;NA	NA;NA	intron:PKHD1:NM:170724:46/61;intron:PKHD1:NM:170724:46/61	
0	chr1	183081367	183087407	2000260	0	+	238548; L1AD312; RIP_L1_chr1_181_01;AC225572	TTGGGGATAACTTTAACTGC;NA	CCTTTTCATCCTCATGTTTT;NA	LINE	L1	L1HS	ttaacagagctttacacttagggtaaataggtgatttcattgtgaaaacgctaagcatttacaattattttcagtaaagttcaaggagcatcttgtttaa<br>taacttggctaacaacaagcttaaacaaaataagatgggattactgaatggaatattatgcagtcactaaaataatatttttttcttttccacaaattaa<br>aataacaattatgatgacattatgaaaaagtagtttggggataactttaactgcaaaaagcagattataggccaagtatgatggttcatgcctgtaattt<br>taatactttgggaggccaaggaggattgcttgaggccaggagttcaagactagcttgggcaacatagtgagacccccgtctctac<font color="green"><u>AAAAATTTTAAAAAG<br></u></font><font color="red">GGAATGTGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGATCCCAGCGTAAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCAGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCACCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGCGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCTGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAGGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTAGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACATTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAATGCCACAAAGACACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCAGGTTACCCTCAAAGGAAAGCCCATCAGACTTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGG<br>GGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTA<br>CAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCC<br>GCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGGTCA<br>AATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAG<br>TGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAA<br>GGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATT<br>CAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACT<br>CCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGC<br>TCTGCACCAAGTGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATT<br>GACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCA<br>GGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAAAAATAAA<br>GATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCC<br>TACAAGAGAAAGTAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGC<br>AAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAA<br>CAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCC<br>ACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTC<br>TCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCC<br>AGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATC<br>CTCCCTAACTCATTTTATGAGGCCAGCATCATCCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACA<br>TTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGAA<br>AGGCTGGTTCAATATACACAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCC<br>TTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTAATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCA<br>CAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGT<br>GTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATG<br>ATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAAT<br>CACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAAT<br>CCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGC<br>TCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATATTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCA<br>CAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCAC<br>ACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCC<br>TCAGAAATAATGCCGCATGTCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGG<br>AAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACC<br>TAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACA<br>AAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGA<br>AAATTTTCACAACCTAGTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAA<br>GTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATG<br>CAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAG<br>GAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACAATTTGA<br>CCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATA<br>GCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATG<br>ATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACT<br>CATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAATTAAAAAA</font><font color="green"><u>AAAAATTTTAAAAAG</u></font>aaccagattatacattacatatatatcctgattaagtaatgcaa<br>aacatgaggatgaaaagggaatgcataagaaataaaaggtgagttatgggggattttgtacttgtggctcaaagtttatgaaatgttacactgttaatta<br>tccttaggaatatacaggctgatctaacgactttttttttttttttaactaatcctcttatgaccatggttgatatttgcctttccagagtcaaaatggt<br>cctgggcagtttgcctcttagaatctcagagagctcccgtgagcgctggcagcttccaaagcccagcacgcgccacagtcccaccacgcggggtccaatc<br>caaggtgtttgtaaagaacttcggtgagcagagactcacat	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	55;NA	6284;NA	228;NA	NA;NA	intron:FAM129A:NM:052966:5/14;intron:FAM129A:NM:052966:5/14	
0	chr1	91686695	91687138	2000261	0	+	L1AD318; RIP_L1_chr1_091_01	TGTGGCTAATTCTGAGACCT	ACATGAGTTATCGTGGCATC	LINE	L1	L1HS	tcatggggtgggggactgggggccagatagcattaggagaaatacctaatgtaaatggcgagttgatgggtgcagcaaaccaacatggcacgttgtgcac<br>atgtaccctagaacttaaagtatttttttaaaataccatttttaaaaaataaaaattccttggaattcataaagtattaaaattctctaacaaatacttt<br>ttatttaattttcttttcctttatattcattgaacttgcaattattctgggcctaagtattaattctgtggctaattctgagacctcagattcctattcc<br>tctcttaagtacaacttgcctttaggttatttctctgctcactagtaccttgaccatgggatgaacaaggaaaacaagaactccattttt<font color="green"><u>TTAAAAAAAA<br></u></font><font color="red">TGTTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGC<br>CATTAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGC<br>ATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGG<br>AGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAAT<br>GTGCACATGTACCCTAAAACTCAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u>TTAAAAAAAA</u></font>aagttcgtgaaatataaatgcctgatgccacgataactcatgtcct<br>ttatttggagagaaagtagatagaaaataattaaatatgagtaattcaggcacagctttttgtagcaagtccacaggcatcgcagggctgagccaagtcc<br>tgcttttaaaaagcagatatatcagatctgtccagatccttggaacttctctccattcatatttgtgagcacaagaacttactgacctttgttgctttcc<br>atgatcattcccttttgtgaacccagaaagttggcaccacaggtacacagatgatgtacatcttcctataaaaccttaattttattatatatttttctgc<br>ttgcattacttcataaaaagaagatgcaaagttaagtgtatcct	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	631	176	NA	intergenic	
0	chr17	55942204	55942205	2000262	0	+	LID2; RIP_L1_chr17_055_01	AGGAAGTCTTGTAAATGTATCC	GCCTTCAGATGAGTTTTGAGATCAGAGC	LINE	L1	L1HS	gcgtggtggcacatgcctgtaatcgcagctacccggggggctgaggcagaattgcttgaacccaggaggtggaggctgcggtgagctgagattgcaccat<br>tgcactccagcctgggcaacaacagtgaaactccatctcaaaaaacacaaaaaacaacaacaaagaaatcatctgatgtctagatttgcttccaaatatc<br>acatgaaaggggaaagtgaatgggagaacagattcagtaacaagactggccagaatcgataattgttaaagctaggtgatagacataggaattcattatt<br>ctattctatttctgtatgtatttaactttttaaaaaaggaagtcttgtaaatgtatcctttacctctaacataaaagaatatgtttcatttaacaaacat<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>gagttatcgtcacttacatgattcatttattattatgctctgatctcaaaactcatctgaaggctggcacagtggctcac<br>acctgtaatcccagcaatttggcaagccgagacaagaggattgcttgagaccaggagtttgagaccagccggggcaatgtagcaagacccccaactccac<br>aaaaaataaaaaattagccagacgtggtagtacatatctgtagtctgaactacttgggtggctgaggtggaaggatcacttgagccctgaaggtcaaggc<br>tgcagtgagtcatgattataccactggactccagcctggacaacacagcaaaatcctgcctcaaaacaaataattttaaaaagtaaaaaactcatctgat<br>gttgggcgtggtgggtcaca	Other	<UL><LI>Sheen FM, Sherry ST, Risch GM, Robichaux M, Nasidze I, Stoneking M, Batzer MA,Swergold GD. Reading between the LINEs: human genomic variation induced by LINE-1retrotransposition. Genome Res. 2000 Oct;10(10):1496-508.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042149">PMID:11042149</a>.</LI></UL>	E:Retrotransposon display:L1 display; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	59	120	300	NA	intron:APPBP2:NM:006380:1/13	
0	chr5	8802504	8802505	2000263	0	+	LID5; RIP_L1_chr5_008_02	AGGCCATGAAAACACTGAGCTTGGC	AGCCAGCGAATAGCAGGTGAAAAACAC	LINE	L1	L1HS	actatatatcatggaccctgatttatatataaaaattcatcatgacaactttataaaatgcatctcgactaaacagctaacattctgaattctgctttat<br>gcagtgtgtttgggtcatacatagaggccgtgaaaacactgagcttggcttaaatacactggtttctcttatctacgttaccatcagtttaaagtaaaat<br>ttggaagaaaaaatatattgaagaataatataagtaggcactcaaacaatgtgccacacacttccatcttaaaacaaagttaatatgtagaatggcacag<br>gcttcagacattttcatattatctggtaacacttttctttaactacagcatttaaaatatataggcaggttaatataagaaatatcattccaaagagtaa<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>attttctctttaaaattttttaatgaatccatttcaaaaattttaaatcaattatctttttcattacataaactcaggca<br>tgtatgaacatattttttagtggaagtagtcaaataattttgatttgaagccttttaaggcttaggaatgtcaagacagacatcaaatatttaacagatc<br>catgatgcaaaagcaatttcagaggcttttgaaatagacttttggccttatgctgaatcatcccatactgaggtgctctttgagttattacatttgccct<br>tcatgtttgtgtttttcacctgctattcgctggtatttcttgacaccacatgcgttcctccctagaggattcttttcagtgttgtgtggtgcctgccctg<br>gtttgagcaggtgcatagcc	Other	<UL><LI>Sheen FM, Sherry ST, Risch GM, Robichaux M, Nasidze I, Stoneking M, Batzer MA,Swergold GD. Reading between the LINEs: human genomic variation induced by LINE-1retrotransposition. Genome Res. 2000 Oct;10(10):1496-508.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042149">PMID:11042149</a>.</LI></UL>	E:Retrotransposon display:L1 display; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	59	600	470	NA	intergenic	
0	chr17	15451919	15451920	2000264	0	+	LID6; RIP_L1_chr17_015_01	CGTTCTGGTATGCAGTCCAC	CCCTGAGTGTGCTTTGTACT	LINE	L1	L1HS	cctttccatgtacacaaaggtcagggaaatcccaaatgtcagtgtggataactcaagcgtccctagagacccagattctgaccccagtacctacgtgtca<br>gagagaatgcgaacattgtaggtcccacagaaaacatttctctcctccatcaggacctgctgcgtttcctcgttctggtatgcagtccacaggttgtact<br>cattctaacaagggaatatttgaagttaaagctcagtggtaacttcaaatacccacagtcccagagcccctagggtctccctggtaagggcacagggctc<br>acagattcttcctctgaaggctgaggctgctgctctgcagagaagggagcagccagtgagcaagcaccaaaggaaaccatgagttagaaaatgttgggtc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>aaggttcttaattcttctttcatctctttgattttccatgtgccctgattccatgaactttcaaggctgaattccaaatg<br>tcaccaataacacaactttttcaaaaatcagctcacaaagggtatcctcacaacataaagtcacaggtgccctttgaccgaccatttcacagaagtcgga<br>acgtcatatgtatattacatctacctgatagtacaaagcacactcaggggattttaagccaactgtgaaattactgctacacatgctatgctatgcattt<br>gcatttttttttttttttttcagacggagtctcgctctgtcaccaggctggagtgtagtggtgcaatctcagctcactgcaacctccgccctcctgggtt<br>caagtgattctcctgcctca	Other	<UL><LI>Sheen FM, Sherry ST, Risch GM, Robichaux M, Nasidze I, Stoneking M, Batzer MA,Swergold GD. Reading between the LINEs: human genomic variation induced by LINE-1retrotransposition. Genome Res. 2000 Oct;10(10):1496-508.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042149">PMID:11042149</a>.</LI></UL>	E:Retrotransposon display:L1 display; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	59	505	350	NA	intron:CDRT1:NM:006382:5/12	
0	chr4	80987701	80987702	2000265	0	+	LID4; RIP_L1_chr4_081_01	CGAATTCAGGAGGCAGAG	TAACGCCACTCTTTAAGCAG	LINE	L1	L1HS	aggctgaggcaggtgtatcacctgaggtcagaagttcaagaccagcttggccaatatggtgaaaccccttctctactaaaaatacagaaattatctgggt<br>gtggtggcacgtgcctgtaatcccagctactcgggagctgaggcaggagaatcgctcgaattcaggaggcagaggctaaagtgagctgagatcgtgtgcc<br>actgtactccagcctggccaacaagagtgagactctgtctcaaaaagaaaaaaatatataaagaaagaaagaactaaaattcatcaaaggtcacttaaag<br>caaagcactctatttattcacattttatagatactaattatgttttcactcatgcttttcagtatttcaaaataaaatggctcctcattttcatgccaaa<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>acatctttacaaaaattgttacagattatttccaataccttttgctcagcaatttggcatcaacactactcaggcaacaa<br>cattcatatggtaatagttaaatttgtttttcactagggccctctcagccaaatttttcatttccagcctgcgcatgctgaactctagaagatgttgtaa<br>ttattttattgaacatgggtatttctaaatcaattaatatcatgtatgttgccaattattttcctgcttaaagagtgggcgttactctgtaaatttgttt<br>cttttaatcttatttctcaggtaacagttagactggatttgaatttcacctctttctcttcttagctgcatggcattgcaagaatgttaacctctttgaa<br>gcttactttcctcatctcta	Other	<UL><LI>Sheen FM, Sherry ST, Risch GM, Robichaux M, Nasidze I, Stoneking M, Batzer MA,Swergold GD. Reading between the LINEs: human genomic variation induced by LINE-1retrotransposition. Genome Res. 2000 Oct;10(10):1496-508.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042149">PMID:11042149</a>.</LI></UL>	E:Retrotransposon display:L1 display; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	59	506	550	NA	intron:GDEP:NR:026555:1/2	
0	chr11	37405387	37405472	2000266	0	+	11015; RIP_L1_chr11_037_01	NA	NA	LINE	L1	L1HS	attcatagccaagatttcgaagcaacataagtgtcctttaacagatgaatggataaataaaatgtggtacatatacacagcagagttctattcagccata<br>agaaagaaattctgtcatttgcaacaatatagatggaactaaagtttattatgttaagtaaaataagccaggcacaagaagataaacatcatatgttatc<br>acttatttctggaatctaaaagtcaaaacaattgtatttatgaagatagagaatagaagtatggtagggtagtatagttttgtgggtagggggagatagg<br>gatggttatcgtacaagataattagaatgaataagacctagtatttgatagcacaagagggtgactatagtcaattataatttaatt<font color="green"><u>TAAAAATAACTAA<br></u></font><font color="red">TAACTAACCTGCACAATGTGCACATGTACCCTAAAACTGAGAGTATAATAAAAAAAAAAAAAAGAAAAAAAAAAAATAAAAAAAAA</font><font color="green"><u>TAAAAATAACTAA</u></font>a<br>agtataattggattgtgtctaagacaaaagataaatgtttgattggatggatacccatcaaacatttcatgatgtgattattatatattacatgcctata<br>acaaaatatgttatgtaccctgtaactatatatacgtactatgtacccacaaatattaaaaaagaatttaaaaagatatgccctttctttaaataacata<br>gactattgtacaagaaattagatgtctccaaatataactatgattttgaatgccaaatataggatacataggaaaaagagtgagatttcaggaaaaaact<br>gctatgcataggtttaggtaaagagtataattaaaaaagcaaacccagagatagcatgtactaaagtaccactgtttggaattttt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr12	60621488	60627538	2000267	0	+	238234; RIP_L1_chr12_060_02	NA	NA	LINE	L1	L1PA2	actttcatatatgttttaaacaatatgggcatgtaaatctattttctaactgtaattttataaaatttaaatacagatcatatatttgtgatgaaaatcc<br>agactctgaactagatatattgttaccataaacagcacaccaaattttgaaaacagtaccaaaacaaaaacttatattactaataacttttatatagact<br>acatggtaaaaaagtattttcgatatgttagatacataaaatatatcattagaattaatctgcactctttttaattttctaatgtggctactagaaaatt<br>taaaattacacattagctcacataactttattcgaaagtactggtctagtgaattaatagggtaggcaaaacaagatcttgccaaaatt<font color="green"><u>AAGAATTTTGT<br></u></font><font color="red">TGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCAGTCTACAGCTCCCAGCTTGAGCGAAGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGGGTGCGTGCACCGTGCGTGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACAGATGCACCTGGAAAATGGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAAAAACGGCACACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTATGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGATTAGGTAAACAAAGCAGCCTGGAAGCTCAAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGAAGA<br>CTTAAATGTCCCTGTCTGAAAGCCTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCCACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGAGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAATGGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTATGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCAATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCAAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATCCTTTACA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGATCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATGTAAATGGACTAAATGCTCCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGATTGCAATCCGAGTCTCTGATAAAACAGACTTTAAATCAACAAAGATCAGAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTAAACTCAGCTC<br>TGCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACCTGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACAACATACCAGACTCTCTGGGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCTCA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTGGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGAGCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGACTGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACACT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATCATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGTGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCCTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAACAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTTCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAACTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCTTACCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACATCTTATATAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACGAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTACACTGTTGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGTGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACATGTATGTTTATTGCGGCATTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATGTCCTTTGTAGGGACATGGATGAAATTAGAAACCATCATTCTCAGTAAACTATCGCAAGGACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGAGGTGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAAAGTATAATTTAAAAAATAAATAAATAAATAAATAAATAAAA</font><font color="green"><u>AAGAATTTTGT</u></font>cattcgttttatctcaagcttctcacaaaacctgaaaa<br>ctaatgatgtgttctgatgtttctgctttggaaattagcatatacactcttcattcggtcagtttgttgaaaagcccactctaattcactgggccatttt<br>ctacccatcctttcaaagttctactccaacaatacatgctctaagaaggtcaattctctggcccctgaaagttaagttgctctcatctcctcgatatgta<br>agtgatagctgtaatacatcaatgcttcatatgtctgtgtaccctaaaagactttcctacactgaagcaagggtgtgcaatttggttttggatctgaaga<br>gcttagcacaaatcctgaaacagtaagcctcaaaacaacttgtagaataaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:FAM19A2:NM:178539:1/5	
0	chr12	82368176	82368739	2000268	0	+	54355; RIP_L1_chr12_082_01	NA	NA	LINE	L1	Ta-1	tatgaggccaacccacattgctcaggacaatccgctggacttaaagtccatcatcttaaatattaatctcatctaaaaaaacaccttatagaaacatcca<br>gaatgtttgaccacatatctgggtaccatggtccagccaaatagacaaataaaattaccacacaatgtatatagctggtctagcttatttatgtatctaa<br>gtcatataatatgaaaaggttagccctcacaagagatacattgatcatttacttcaattatgacactattcttagcattggaagagattcaagatacata<br>aaagatacataaaattattcctactgtttcatatggccggagtcttgagtgctttttaaattgctatattgctagtatttagaa<font color="green"><u>AGAACAAGCTCTTAAA<br></u></font><font color="red">AGAACAAGCTCTTAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATACTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCATTGCG<br>GCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATG<br>CAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACA<br>CCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGAAGG<br>GGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCA<br>CAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAACAAGCTCTTAAA</u></font>tattttattaatgaaagaaa<br>aattaacaacattagctggtacaccccaaggagaatacaagtagctgcaaaagaagcaggggtatattaagtgtcaaaataaaggtcaaccatattctag<br>gggaagccaaaagaaggataaaaatagagttgcagatattggtaatatttaagatactctgacatttagatagaagtcgaatcatgtagagagaaggaga<br>aaatatgtggagaacataatacaaacaaggcactaaagtataagggggaatatcaaatttggcttgcttgaataaacttgcaaaaataatttggtgcctg<br>ggaaatgtgagagaaagttgggaaaataagttggataaccatagtgcgtggttcctcctagtag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	45804901	45805037	2000269	0	-	682; RIP_L1_chr13_045_01	NA	NA	LINE	L1	L1PA2	ttgcagagtagtcctaggaccccctggagaagtctcccaaagatgcatgctagggaacactctccatatacacacacattacaaacacaaacacaaacgc<br>atgcagaatttattgcctttttctggccaaacctgattccaattaggttaacttcctctgttaactacctcctctcctccccaacctgaagttgtgacat<br>gttgtctctgctgtagcgtccagatggccaaagcatggggcagggctgaccctgatgccccatgccaggcccctgcccctagcccctgcagccatctggg<br>tccgtgtggatccatgtgggatctcagtagctgcccccttccagttccccacagaggaggaaaaacgtcagaaaagggaagtggggtt<font color="green"><u>AAGATGGTGCAG<br></u></font><font color="red">ACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACCTAAAGTATAATAAAA<br>AAAGAAAAGAAAAAAAAAAAAGAAAGAAAAAAAAAAA</font><font color="green"><u>AAGATGGTGCAG</u></font>tcagttacagcatctccactgacattccggctcccaaagttttgttgctga<br>tgtctcttccttcatcctttctgttcttgtaagttcatgtctttagaataattccttaattgttgtttttgagcagtctttctaccattgctttagaggg<br>acttcagcagtatgcaaaagtaaacgtacgttcaggctgccatttttacaggaagctagagctcacagcctttttattttataattgtggttaagcttaa<br>actcttaactgttgcgctgtgcctcacctctatgtttcactgtctcggaagtcttttttttttttttttttttttgagacaaagtctcgctctgtggccc<br>aggctggagtgcagtggcctgatctcggctcactgca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr14	51474096	51474207	2000270	0	-	8322; RIP_L1_chr14_051_01	NA	NA	LINE	L1	Ta	ctattctaaattgcggtttaaaattcattaacaaggatttactgcgtgcttaatgtgtgtgacccagaagtgcatgcacatgttacaataagtttctaaa<br>gaaaccagccactgaacgaatgtgagagcctgtgcgttacctcactaattctggaagacacttttcgttgttcgttaaggcttcctgtggccacagaata<br>aacttgcaagcctagcacctgaggcttccataattggctgctcccttctccccttcaggcctgtatcttatatggaaagactcagcagagcacctgtctc<br>cttttatcagcttagtacaaggagggctggtaacacacttgtttcccaattcacttttaaaaaatattatttcccaattcacttttt<font color="green"><u>AAAATTATGTATT<br></u></font><font color="red">AGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAA<br>TAAAAAAAAAAA</font><font color="green"><u>AAAATTATGTATT</u></font>tcttttgtaaagaaatacatagccattttcggaaaactgaaaagcatagagattcagaaaacagaaatcttctac<br>aaccctagcacctatagacaacccagttaatctttgcaaccatttttcaagtgctttttcccaccttggagtgcttacatttttgtgtctgatatcatgc<br>agggaaggaaatattaactaatatacataatcatctgtggggccctgcataaatgctgaccttttgggaagatttctcatgatctacactgcaagattta<br>ccatcctgctccatttcctttagagaatgaagttattttaatttttcctcattattcaagtgtcaaactttattttccatcttttaaggctattatacat<br>ctctgataatgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:GNG2:NM:053064:2/4	
0	chr15	27198775	27199188	2000271	0	+	1936; RIP_L1_chr15_027_01	NA	NA	LINE	L1	preTA	gaggcggtggcctggggtccagctgggttaggctgtgggtcttggatgggcaggagccctcctctctggcctgcccacagcagcgtgagctccttgctgt<br>gggcactgaccaccttcacggcccaggattcttggggaactgcagagtaaggagaagacttactctcacctagccgcccagagggtgtgggccaagggct<br>tgctccagcatgaccttggccatcaggggcatataaaagagacggcctttcaaggcgcacaccagctttgtgcctccctcttcccagaaagtatacatgg<br>tagaggcaaagaaagctgttccataggagactgtcacagagagctgcgtatatgccgaaatgtatatgcactcgctctgaatgaatatgctt<font color="green"><u>AAGAATGA<br></u></font><font color="red">TGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAATTAAAAATAAATAAATAAATAAATAAAATAAAATAAAATAATAAAATAATTCACAATTCTAGCAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGA</u></font>aaagcaaatacaattctcgacgtggccaacaaacaagaatgccagggatggccacatccttggggaatgaagagaaat<br>gtcgcctgagtcaaagctggagggaacgggattccactcaggaggccaagggggacattcctgccgtgcccaggacaaggcggggaagcaggtcccgggg<br>agagagccctggctagctgaggacatgcaggcaggactcccaccaaatcatacacatctttaaaaaacctgtatttaaggaaacatctgagccatggcct<br>gcattcctcccagcagcccttggaggccatgtccatggaggggctgccatggccagcgtggacgggcgtgggtgtgtccaggccctggccctccccactc<br>tgccccggagttga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr18	39285551	39286526	2000272	0	+	239086; RIP_L1_chr18_039_01	NA	NA	LINE	L1	Ta-1	aaaatctcataacttgagtaatttgtatttttgatatgttacttttttgtcattccaaattatagcaagttaatctcttatacatttattaactttttta<br>ctatttgtaaataggatatacgctactaaaaattgagacagtaattaatgaagtaaaattttaaagcattaaaaaataagtcaataaaaatatatacttt<br>taatgtaggtacaatatcttctataaacaattcacaatcctgtacataatttgtcgatgttgcttgagcattttagtttcattaatatgggctaatatga<br>aatttctgcctttcatcattttagggaagctttgacatatttcttccttgtttgccaagagaactttggtgtcctttaatgccaatgctttt<font color="green"><u>TAAAAACA<br></u></font><font color="red">TGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCA<br>TCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAG<br>AGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGA<br>GAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATAC<br>CATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATT<br>CACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATA<br>AAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGACATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATAT<br>TCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGG<br>ATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCGGCACAATGTGC<br>ACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAATAAAAAAAAAAAAAAAATAAAAAATAAAAAAAAAAAA</font><font color="green"><u>TAAAAACA</u></font>gtttaccctcagtttt<br>gtagaaacacagtagccagggcagatgtgggaagggtggagtttgggagttaaaggtagccaatggggaggagggaagggatcctttcctgtgatcactg<br>acagatttctctactctcaaataagatgccctgcaggctcaatgggatgccacgaattctcactgaatttatgataattgatgactgcctctatgagtct<br>cttcatgtaaagtttcttctcatatattccatcccaactatttggggaggagaagcctatagaacactatatacactttttttttttttttttttttttt<br>tttgagagggagtctcgctatttttgcccaggctggagtgcagtggcgcgacctccattcactgcaatctctgcct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr18	50016745	50016746	2000273	0	+	13146;1104685128966; RIP_L1_chr18_050_02	NA;ATCATCACCGGATTCCTCAG 	NA;GGGCAGGAAAGACCCTTAAA	LINE	L1	Ta	ctaacattatgatatcatcaccggattcctcagcacaacagcctgttcttaactcagttccgaatgttttctctcactatcatctcgatcacttccaaat<br>gttttctctcactatcttcttgatcaggccatcccattcttaggttcttactgtgccttctcactttgtcttaaacagataaagtccttcagctgattac<br>atttcaaatgcgtcaccaggttggccagaacgcgtcggtttcttcctatcttgtttcttccacttttttaaataaaatagatttttctaggaggacacta<br>tttaacttttcagcacatatctccaagttttttttctaggtacatagaagccctgctttctgtatattgtaccattttcttatt<font color="green"><u>AAAATGTCTTGAAGGA<br></u></font><font color="red">GAAGGAGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAAC<br>CTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAGAAAAAA</font><font color="green"><u>AAAATGTCTTGAAGGA</u></font>gtatacacagagattccaaacagc<br>tttcctatgttttactcattaatatgggcagccaggatctccaggcatttgaagaaagcctttaacatggaaaaacagcgcaagaaaaaaaaaaaaaaaa<br>aacacagcggaaaaaataactttggcagaaacagaggaaacaaagggaactgaagaagcttttaaaaaatctgatgatataacattattcagagattaac<br>atactcggaagatcctttaggatgaaccagacaatgttagaaaagaacaattggacgggcgcggtggctcacgcctgtaatcccggcactttgggaggcc<br>aaggcgggctgatcacgaggtcaggaaattgagaccatcctggctaacacggtgaaaccg	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA;NA	NA;55	NA;571	NA;403	NA;NA	intergenic	
0	chr20	53868029	53874023	2000274	0	+	237994; RIP_L1_chr20_053_01;AC208173	NA;NA	NA;NA	LINE	L1	Ta-1nd	ggatgtccatgttgtaatttcaggaacctatgaatatgttaccctacatggcgaaaggggcttaggtatgagtaagttaaggttcccgagatgagaagat<br>tatcctggattatctggatgggtccaatgtagtcataagggtcctaatgaggaggcagaagagatgtggagatgggagcagatgttgaagaaatatcact<br>gcttctggaagggggccacaagccaagaaatgtgggcaacctctagaagctggaaaagacaaaacaaacaactgacaacaaaaaacccagttctcctcta<br>tagtgtccggaagaaacacagatctgctgacaccttgattttagcccaggagaaaatatgtgggactctgacctctagcagcataac<font color="green"><u>AATAAATTTGTGG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACACAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGAAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCCCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACCCCTGACACCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGCCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAACCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACACCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATATTTTATAGA<br>CAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAGGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CGAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTAAAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTTAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGTGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATAGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATTCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACATTAGACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGACAGCAAAAGAAACTACCATCAGAGTGAAC<br>AGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAA<br>AAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATC<br>CTCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGC<br>TGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATC<br>TAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACATATGTT<br>TATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAA<br>TACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACACGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAA<br>CCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCG<br>GGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTA<br>ACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAGAAAAAAGAAAAAAAAAAAACAAAAAAAAAAAATAAATA</font><font color="green"><u>AATAA<br>ATTTGTGG</u></font>tgtttcaggtcactaagtttgtagcgatttgttacagcagccagaagaaactaatatgatagtcataggaggcttcattgaaaagtggacat<br>ttggacaaagatctaaaaggaggggtagcacccttcctgtgcagagattgtggtgatgtggagccttctacactccatgcctagtcaggtctccaggcat<br>ctgcaacaaccactctcctggattaggagtttaggttgccccgacccctactccacccatgcagatcactagggactgaggaggtttcccagcttcacaa<br>ctaggcacatctcacccactgaattctcccttgacaatggtgcttatgcctgcctctggggacctgtaggtgggcctgccaagactggccccacc	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr3	4041937	4044555	2000275	0	-	238924; RIP_L1_chr3_004_02;AC210910	NA;NA	NA;NA	LINE	L1	Ta-1	ccatcacacaatgctgaatccctacagatcagttaaacagacactgttcctaccagagacaatgagagatcaaactgcccaaaacaaccaggcaaacaag<br>cacactgttttgcatctttctactttcaaagaaccttggacagcaagtaagcactttctaacttacccaaattcagggtcattaaaacatggcatttata<br>cctcttctattaaacttacctaaatgacttgatagagatcttggagaataaggatgtgtcctccagagcattagagccctataaaaatataatgtaattc<br>aaacatgtgaactacatttgtaattttaaattttctagtacatatattatttagggtgaaaagaaacaggtgaaattatttttaaaaa<font color="green"><u>TATATATTTTGT<br></u></font><font color="red">CCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGT<br>AAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCA<br>GGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATG<br>CTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGC<br>TCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACC<br>TTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTGTCCTCTTTTATTTCCTTGAGCAGTG<br>GTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCAT<br>GATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGC<br>TTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATAC<br>CCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCGGTTTT<br>CAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAAATACGTCCCATCAATACCT<br>AATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGT<br>TTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCCTTTTGATGTG<br>CTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCC<br>GGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGACATAGGCGTGGG<br>CAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAA<br>ACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCA<br>AACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACA<br>CATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAG<br>TCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGAGTGTAAACTAGTTCAACCATTGTGGAAGACAGTGT<br>GGTGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGA<br>CACATGCACACGTATGTTTATTGTGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGG<br>CACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAAC<br>TATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTG<br>GGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACA<br>TGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAATATATATATATATATATATAT<br>ATATATATATATATATATA</font><font color="green"><u>TATATATTTTGT</u></font>aatctattttactaaaacaatccctccaaactactaccatttttacatggaatcaatatagaaattacc<br>aatgttattatttttattctaaatcttcaaaatctgatgtgtatttgacatgtatagtctgttctgtgaaaagaccacatatgcaaagtgaccaccaagc<br>acagaaggagctgagaaaccaaagaatgaggcagacaaatccagtttgctagtaaagggtgatttactggggaacttgcctcatggtcttgggtggcagc<br>aagacaggtagatctccacaccattactcctcagaccaagagcttatataccacagagaaagggcatatgtgctctatagccaattaaaggcagccctcc<br>agaaaaggcaagaatgcta	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr3	33528212	33529079	2000276	0	+	52428; RIP_L1_chr3_033_01	NA	NA	LINE	L1	Ta-1nd	aaatgtgagctgccgtgagcggccttaaagtagtttttaaatcaaattgtggtctagttgtgttagtgtgaggaggctctatttacttagactacaatgt<br>gactggagtcccctgcataagccatgctgaagccctgctcattattagtactctcatctctaggagtccttgagccctctgtatcacattaatgagaaat<br>aaaatataaaaataatatgattaatgtgttgtcaaaagttaacatactattcctccttgttttcctaatattttcttccttctgtattgagcttggggag<br>ggtaaaacactggttttgtgatgaagacaagaaatggctgtctatcttcttaccagagtctgtaatctctaaagatagtctt<font color="green"><u>AAGAACACGTAAAAATAA<br></u></font><font color="red">AACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCA<br>TCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCT<br>GGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCT<br>AGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTT<br>ATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAAT<br>ACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAAC<br>CAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGG<br>GGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAA<br>CCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACACGTAAAAATAA</u></font>ctgcttttgatgct<br>actttggcagtctctcacttaagatctcaataggtgaaaaatgcttagaaaggtacagtgggacatacactggaaaaaaaaaaaaaaaaaaaaggccagg<br>agtggtggctcagcctataatcccagcactttgggaggctgaggcaggcagatcacgaggtcaggagatcgagaccaccctggctaacatggtgaaaccc<br>tgtctccactaaaaatagaaaaaaattagcatggtgtggtggcatgcacctgtagtcccagctgttagggaggctgaggcaggagaatcgcttgaaccca<br>gagaggcagagattgcagtgagccaagatcgtgccactgcactccagccagggcgacagagtgagact	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CLASP2:NM:015097:35/38	
0	chr3	153794429	153795845	2000277	0	-	239284; RIP_L1_chr3_153_01	NA	NA	LINE	L1	Ta-1	ctgggatcaagcaatcctcccacctccacctcagcctcctgagtagatgagtagctgggactacacatgtgtgccaccacacccagctaatttgtaaaaa<br>ttttgtagagacagggtcacactgtgttgctcaagctggtctcaaactcctggaatcaagcaatccccccacctcagcctcccaaagtgctggaattaca<br>aacataagccactgtacctggtctgtgttaccattttcatagtaaaatatttttaccacaaagctaatttatcactaaatatactctgttctcttataat<br>gaacatgtgtcattctttttgtatgcccagcatacatcttgctttttttgtgtaaggaattttctaccttatgagtgtgggtggg<font color="green"><u>AAACAGTGACCTCTT<br></u></font><font color="red">CTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTC<br>ACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGG<br>ACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCA<br>TCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAA<br>TCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTA<br>TATCTCTGTTTTGGTACCAGTACCATGCTGTTTGGGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAG<br>ACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGT<br>TAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTT<br>CAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGT<br>ATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGAT<br>AGACTGGATGAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTG<br>GAAACCATCATTCTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACA<br>GGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGG<br>TGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACAGTGACCTCTT</u></font>tccataaaaagtctaggaaaattgcttgaagagaggacacaggcatgtgtctttggttttgccaatta<br>gatgctctcttggaggatgtggatttgagaactgatgatgcaaagacctatcctttgggttagggtggcaagagctctagtcagcatctggcactatgag<br>tatctgcagtataagcctcaaaatctgtgcctggaaacagtgacatcagtgtctctataagaccagccctactaggctttatgttgggcaatacaaagtt<br>ggacttggttcttggtgaaagtctccaagccaattatctggcccacttgggaataaatgataattctgcttaaataaaccaaatttctgttgcttgcaac<br>aaaaaccctgactgatt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	40661213	40661214	2000278	0	+	6405; RIP_L1_chr4_040_01	NA	NA	LINE	L1	Ta	aattttccatgggctttctttttgttaagggtaatacctttttttatccctccaaccccccaccaactttctgcttccatgactaactcatttaaaaaaa<br>aaataaattctgctctgctgatagaacaagaactgaagattttcttactgtgactaaaggctacatacacttgtacttggcccagatttcaactggtcac<br>cctggaaaagcttgaccctcttttgtggccactgggtctgtttgagaaatacacctacaagcattgaactagtaagctatccctaaaaaaacagtccata<br>actgattcacctacctgtcatctgattcaaccaacaattgcaatgctgtgtttttcactgagcaaaaccacgtaaaattatatc<font color="green"><u>AAAAATAAGATAAACA<br></u></font><font color="red">GCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTA<br>TAATAAAAAAAAAAAAAAAGAAAGAAAAAAAAAAAAAGAAAAAAAA</font><font color="green"><u>AAAAATAAGATAAACA</u></font>atcatttttttccccaaaagaagtaaacgacatacacc<br>ctatggcccagcaatatcgagagtgtatgccacatgccttctcatgcagttcaattagaggaatgtgcggggtgctccctgtggtactgggaaaatgggg<br>gcaacctgcaagtctatcactctaccaggggaaaggtaaaatgtgttggattcacagaatggagcaccatccagccactggaaacaatgcagcccatgta<br>cacatagcctatggatacatctccaaaacacagtacacgggggaaaatacccattgaataaacacacacacacacacacacacaacaatgcacattgcaa<br>gtatagttttgaacaaaaagttacccattaaacacattagaatagt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:APBB2:NM:173075:6/17	
0	chr4	45750766	45752952	2000279	0	+	239036; RIP_L1_chr4_045_01	NA	NA	LINE	L1	Ta-0	acattgttcccatcgtcagcccaggtaggtttccaaagtgtttcttggctccacaattatgtctcctatctgaaaaatcttaaatccaatgtgtggtttc<br>attttgttatccactactgcaataaattttactttattaagtttctgttactttcttttttaataaggcaaaaaaactaagcagaactttgctttcagac<br>atttatttaatttagtaattattatcactgtcattaccttgagaagaacatagtggattttctattaaaatatttctgagtccgtgataataaaaaacac<br>ttaagatattaacaggatattgagaaaacattttggatatcattgctatattctccatggcttcccctactcaagatcctacaata<font color="green"><u>AATAGTCTCCCATC<br></u></font><font color="red">AAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATT<br>TATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCT<br>GTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCA<br>GCTTTGTTCTTTTGGCTTAGGATTGACTTGGCGATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCA<br>TTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTT<br>CTTCCATTTGTTTGTGTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTAT<br>TTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACAT<br>TGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGC<br>AAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAAT<br>AGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCAGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCAT<br>AAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAA<br>ATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCG<br>CAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAA<br>GGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAA<br>ACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTT<br>TACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCAT<br>CCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACT<br>TGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCA<br>TATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGG<br>GAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGGGGGGAGGGATAGCATTGGGAGAT<br>ATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAA<br>CTTAGAGTATAATAAAAAAAAAAAAAAGAAAGGAAAAAAAAAAAAATAAATAAATAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATAGTCTCCCAT<br>C</u></font>acatttgaaataaaatttaaagtccttaaaatggcccacaaaaatttacctgatctaactattggccccttctccaaatttattttctgtgactattca<br>ttcagctccaaccacatttgtcatttttctgaaccccaaagcatggcatagcaggaagatctggcttcaaaaaccatatggttccccctgcctggaatat<br>ctttctgcccaatatccaccaggttagcaccacacttcattgggtcactgctcaaatgccacatcatcagaggtatctattgagactccacaatataaaa<br>tagcaaatatcataccactcacaccctgtcattttctaaacattgattttgctatctcttcacagccttcatgactcactaaaattt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:GABRG1:NM:173536:7/9	
0	chr4	78455299	78455564	2000280	0	+	1132; RIP_L1_chr4_078_01	NA	NA	LINE	L1	preTA	gattaaaaataaagtctttaaagtacaataggattctcatttagtagccaaacttgaaagcagactggccctggggtattcatagtactagtcagtaatg<br>cctaggcctgatgacaaaaccatgagccaaaacttaaaatgaaggaatacatgtcagtttttggctgaggttagtggcagaaatggatctcttgctcacg<br>aggtgttttctgacttcaagccctttcttttggacaaagtgaaacttgctctccttacttttaggatggagttgaaatccgtagtgtctttagacctgtg<br>atgctattggtttttgtaagactccctgtactgagcgagtgtgaaggcctagtttgcgtttcctaagaaggcagagttcccaggtta<font color="green"><u>AGAAGTGTGTGTA<br></u></font><font color="red">AAGAAGTGTGTGTACGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTG<br>GGGTCGGGGGTGGGGGGAGGGATGGCATTGGGAGATATACCTAATGCTGGATGACACGTTGGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATG<br>TAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAGTGTGTGTA</u></font>aaacacagttgggcttgggtg<br>tacacaagtcctgccttctagccccctgtctgagtgtgccaatatgtatccaaagtcaattctattccacaagattcctagaggacgggaaagtctgagt<br>ggtggggcctggcccatccactatggcagtcacctggatgttgcaggggagcggccactgagccacacgtgacgttcctggtttgggaatagtatatcat<br>tggtgttacttctgtggcacagctctacattctacaagcttaagacccatctacatcttttcaggtctcacagaagatgcagtaggactgatcattttgt<br>aaatcactttcctctgaggactgtactggcctggagatgaatattcaactcttcatttcccactac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	91815822	91821931	2000281	0	-	238834; RIP_L1_chr4_091_01;AC225697;AC205795	NA;NA;NA	NA;NA;NA	LINE	L1	Ta-1d	agatgatttacctacaccatgtttgccaaatcagagtaaagacataatttaggacatcaaaagtggtaggagaaagcttgcttcacacttgctcaacagc<br>aagcacttgtagtttagcaaaatatagaaacataaaaaaaaaagttatttttttttctttcagtctgggaccagaaatagtggacaagtagagaattatt<br>tttgttttcttacggcaatactagaaaatcaaaaacattagatatttcttccttttgttatatttcccaaggtggtaaacacccaatatgaatgtaaaaa<br>tttaccatttttctgagttctgtgaagactgtataattatcaattcttaaatcagtccacaaataaacatgtgttaccacatggtat<font color="green"><u>AAGATAAAAACAC<br></u></font><font color="red">GAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTTCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGAAATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGACAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTCACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAATGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGCACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCGGTTAGAATGGCAATCATTAAGAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAATTGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACAAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACATAAAAAAAAAAAAAAAAAAACCACCAACCCAAGCCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGATAAAAACAC</u></font>acatactatataaattttagatcatgtgtgttaacaaagttttcaaatacatcaacatcaaaatatgtcagtacagg<br>caaaaaaaaattggtctacccataagatatacactaacattagaaatcataaaattgagttcaacatacttaaaatacaaaaaataccaatttgatttca<br>aactaatattttgtgaatccacaaaataaactcagctataactagctgtacaatacacatttactagacatatagtaatatagaatatttttttcttgca<br>tccttacaaagcacactctctacatgtgattaaaaaaacatgcattttctcttaaagcacatattatttctagattgaaataagccttgcaactgtaagt<br>aattgtttat	UCSC;UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference;E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA;NA	NA;NA;NA	NA;NA;NA	NA;NA;NA	NA;NA;NA	intron:KIAA1680:NM:207491:6/8;intron:KIAA1680:NM:207491:6/8;intron:KIAA1680:NM:207491:6/8	
0	chr6	57531046	57537079	2000282	0	-	238745; RIP_L1_chr6_057_01	NA	NA	LINE	L1	L1PA3	tattcccagaggctatactggaaagctcttaatattatggtcaatttactatacatagaggagaaaatcacctctctcaagacatgggacatgaaattct<br>atagggcattaagagattctgtcctaggacttgaagaaattttaaatcccctttttgaaaaaaattggcccaaacagtggcccttgtactctctgcttat<br>aatgacactgatcaaatcttctgagacagaagctggaagaggaattaggaagctattgcaataattagataagagatggtgatggtgtggaccaatattg<br>tggcagtacaaactggataatgatatactttcaaggttgagacagaacaatttgctgagagcatcggtatgagagaaaggag<font color="green"><u>TAAAAGACTATATACATC<br></u></font><font color="red">GGGGAGGAGCCAAGATGACCGAATAGGAACAGCTCCGGTCTATAGCTCCCAGCATGAGCCACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGATAGTGGGCACAGGTCAGTGGGTGCGTGCACTCTGCACAAGCCAAAGCAGGGCGAGGCATTGCCTCACTCCG<br>GAAGCACAAGGGGTCAGGGAATTCCCTTTCCTAGTCAAAGAAAGGGGTGACAGACTGCACCTGGAAAATTGGGTCACTCCCACCCGAATACTGCGCTTTT<br>CTGACGGGCTTAAAAAATGGCGCACCACGAGATTATATCCCGCACCTGGCTCAGAGGGTCCTATGCCCACGGAGTCTCACTGATTGCTAGCACAGCAGTT<br>TGAGATCAAACTGCAAGGCGGCCGCAAGGCTGGGGGAGGGGCGCCCACCATTGCCCAGGCTTGCTTAGGTAAACAAAGCATCCAGGAAGCTCAAACTGGA<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACTTCTGCAGA<br>CTTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACAGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCTGAGCAGCCTAATTGGGAGGCACCCCCCAGCAGGGGCACACTGACACTTCACATGGCAGGGTACTCCAACAGACCTGCAGCTAAGG<br>GTCCTATTAGAAGGAAAACTAACAAACAGAAAGGACATCCACACCAAAAACACATCGGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAA<br>AGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAAAGCAGAGTGCCTCTCCTCTTCCAAAGGAACGCAGTTCCTCACCAGCAATGGAACAAAG<br>CTGGATGGAGAATGACTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCAACGGGAGGACATTCAAACCAAAGGCAAAGAAGTT<br>GAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAGACCAAGGCTCGAGAAC<br>TACGTGAAGAATGTAGAAGCCTCAGGAGCCGATGTGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCAAGAAGGGAA<br>GTTTAGAGAAAAAAGAATAAAAAGAAAAGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGT<br>GATGGGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCGAGGAGAACTTCCCCAATCTAGAAAGGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAAGGCCACAAAGATACTCCTTGAGAAAGCAAGTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTCAAGGGC<br>AGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCACCAGACTAACAGCGGATCTCTCAGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATGCTTTACACACA<br>AGCAAATACTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGAAACAACCGTTACCAGCCGCTGCA<br>AAATCATGCCAAAGTGTAAAGACCATCGAGACTAGGAAGACACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATGTAAATGGACTAAATGCTCCAATTAAAAGACACAGACTGGCAAATTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAAGAAAAAAAGGCAGG<br>GGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAAGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACA<br>CATTAATAATGGGAAACATTAACACCCCACTGTCAACATTAGACAGATCAACGAGAGAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCA<br>CCAAGCGGACCTAATACACATCTACAGCACTCTTCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCAC<br>ATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGTAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAACCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACAACATACCAGAATCTCTGGGACGCTTTCAAAGCAGTGTGTAAAGGGAAATTTATAGCACTAAGTACTAAGTGC<br>CCACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGG<br>CAAGAAATAACTAAAATCAGGCAGAATTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATTAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAA<br>CAAAATAGATAGACCGCTGGCAAGACTAACAAAGAAAAAAAGAGAGAAGAATCAAATAGATGCAATAAAAAATGATAAAGGGGATATCACCACCGATCCC<br>ACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTGGACACATACACTC<br>TCCCAAGACTAAACCAGGAGGAAGTTGAATCTCTGAATAGACCAATAACAGGATCTGAAATTGTGGCAATAATCAATAGCTTACCAACCAAAAAGAGTCC<br>AGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATC<br>CTCCCTAACTCATTTTATGAGGCCAGCATCATCCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAAGAGAATTTTAGACCAATATCCTTGATGAAC<br>ATTGATGCAAAAATCCTTAATAAAATACTGGCAAAACGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGC<br>AAGGCCGGTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGATAAAAACCACATGATTATCTCAATGGATGCAGAAAAGGC<br>CTTTGACAAAATTCAACAACCCTTCATGCTAAAAATTCTCAATAAATTAGGAATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCC<br>ACAGCCAATATCATACTGAATGGGCAAATACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAG<br>TGTTGGAAGTTCTGGCCAGGGCAATTAGGCAGGAGAAGGAAATAAATGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACAT<br>GATTGTATATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAA<br>TCACAAGCATTCTTATACACCAAGAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAA<br>TCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAATCCACTGCTCAACGAAATAAAAGAGGTTACAAACAAATGGAAGAGCATTCCATG<br>CTCATGGGTAGGAAGAATCAATATCGTGAAAATGGTCATACTGCCCAAGGTAATTTATAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTC<br>ACAAAATTGGAAAAAACTGCTTTAAAGTTCATATGGAACCAAAAAAGAGCCTGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCA<br>CGCTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTGCTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCC<br>CTCAGAAATAACGTCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGATGCTGG<br>GAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGAGTAAAGAATTAAATGTTAGAC<br>CCAAAACCATAAAAATCCTAGAAGAAAACCTAGGCAGTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCTAAAACACCAAAAGCAATGGCAAC<br>AAAAGCCATAATTGACAAATGGGATCTCATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAG<br>AAAATTTTCACAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCCAACAATTTTACAAGAAAAAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGTTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCGCAATGAGATACCATCTCCCACCAGTTAGAATGGCAATCATTAAAATGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCATCCCTTGTGGAAGTCAGTGTGGCAATTCCTCAGGGATCTAGAACTGGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAAGGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATCAAAAATGATG<br>AGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTCAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAACTGAACAATGAGATCACATGGACACAGGAAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGGAAGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGATGAGTGAGTGGGTGCAGCGCAACAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAAAGTATAATAATAAAAATAAATAAA</font><font color="green"><u>TAAAAGACTATATACATC</u></font>aaggtttttaacctgagcaactaaaacaatgagactgccattatctga<br>gattggaaagacgataggaggagttggtttggggcagaatggtataccaacagcttagttttaagcactttaagtctgagatacctcctaagtattatga<br>tgtttgtataatctagaacatagatcatctatagatcataagtaggcacttggatatctgggtctagagctcagggaggtggttaggctgaaaatatgcc<br>cttaggagttattggcatatagatctatgtgaagccataaaaaaggatgagatcacctgagtgtaaatataaagaactaaagtgtttcctggagtgctaa<br>actatctaagaagaatataatacccaaattcctc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PRIM2:NM:000947:10/15	
0	chr6	66651776	66652551	2000283	0	+	239277; RIP_L1_chr6_066_03	NA	NA	LINE	L1	L1PA2	agatttttaaaacagattttgaaagaatctaaacatattttcacacactgtttctgttttgtttgcttttataattaccaggagttatattttagttgaa<br>atattataaagaaataaagaaagtagcttgcaagccaaatatttccacagagaatagaaattcaattattttttgaaaaagaaaactgtcaatgaacata<br>ctagccaatttacaggcataaacaactgaaaaaaaagtgagcttaaagtggacattgggactatcaggatgtaacattgagttacatgttatttgctctt<br>ttctcaaaagagaaaaacacaatatttttaaaagattggaattaaagattttctgttactttaacagcacagggaatgctat<font color="green"><u>AAGAAATCGGAGGTTACA<br></u></font><font color="red">TACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAGTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATC<br>CCTGAGGAATTGCCACATTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCAC<br>CTGTTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATG<br>AGCATTTTTTCATGTGTTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACA<br>TATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATC<br>GCAAGAACAAAAAACCAAATACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGA<br>CTGTGGTGGGGAGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTA<br>TACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATTAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATCGGAGGTTACA</u></font>actgat<br>cctacaccacacataggggatactgaagtggttttcctaccaggtgtactacaagtcagccacagattctctttcagtacgcctgagaataacttcactg<br>cctcctgggtaacacaagaaaatatgacagaattagtttgaatgcactgaaataattttaggtgaattattagcccctttttctcatatctgtggtcaga<br>aatatgaaggttgtagattttgcaatgaattcgctttttctgtttgcctcaattgagtcttgctttatgagggaaatcagaatcatacacaatgtttatg<br>tcccccaacagattctaaccattctacccaagaatattacatatgttgatatatgaatagaagaataggaatataa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr7	87929244	87929685	2000284	0	-	4297; RIP_L1_chr7_087_01	NA	NA	LINE	L1	Ta	caaaaactgcttgtatctgcctgtcatgatggaaccatccttcatacaaactaagccagatatcctcaccttcaccttcaaacagaagatgccccattaa<br>tgttaatttctcatctagctctgtcaaaatcctaccagagtattctgtaacctaaaaactaaattgtaggctgggcgcggtggctcacacctataatccc<br>agcactttgggaggccgaggtgggcagatcacttgaggtcaggagtttgagaccagcctggccaacgtgatgaaaccctgtctctactaaaaaaaaaaaa<br>caaaaaaaaaaaaaacccaaattaaagataacaatccttacgtgaaatagtagtagtagaagaagggatggaggaaagaaaaatgagtggtt<font color="green"><u>AATATTGT<br></u></font><font color="red">GGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAA<br>ACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTC<br>TGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCA<br>CATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTGAGAGTATAATAAAAAAAAAAAAAAAAGAAAAAAAAAATAAAGAAAAT<br>GTGGTATAAATACACAATCAAATACTAAAAAAAAAAAAAAAA</font><font color="green"><u>AATATTGT</u></font>taacattcttcagcgaaagaccaccaggtgaataagatgaacaagtcagg<br>cttgtactgctgcagaaggcgagcacacataccacagagaacacttatctgggcatctcagcaagagggtattagaaagaacctattttaggagagggtc<br>tgggcttcagttgggtgatttggataggacatgacagaacaggagttcaccagaaatgaaatcctgtcagaaagcaggggtaattctaagattgagtatt<br>ttagtaaatcttgtctgcacagagagcagactagagtgaggacaaatctgtaattaaagcagcagtcactcatcctatctggaagagggagatactcggt<br>tttttgtggcttactcagttaccctgcttttgtctcgtttta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	126664312	126670316	2000285	0	+	238261; RIP_L1_chr8_126_01;AC193124	NA;NA	NA;NA	LINE	L1	Ta-1d/Ta-0	cttcttgtgtaattgatttattacgtaagggatgtaggagaaccctgtatggaagtgtgggaggctggagagggcaatggaaggggttcagcagagatat<br>ggtttcagctggagaacagcctcagtctgatcccatgggcagtctgaagcatgaatggcaccacagagctggtccctccttgtggctaaggggctgggta<br>ttctacttccagttagttgggggtttgtgactcctagacatttccctgtgagacgattcctgactatccacagaggtaatactctggagaagggtgcatt<br>gctcacagcagcttgagggtggctgtgttggctgggaccgcaaagagatcttgggtgaggccccaacactttgatgctagcacatctttaaa<font color="green"><u>CACTCACA<br></u></font><font color="red">GAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTG<br>TGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGA<br>CGGACGCACCTGGAAAATCGGGTCACTCCCACCCAAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCT<br>CGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCAT<br>TGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCAAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCT<br>CTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCA<br>CGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGC<br>ACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGA<br>AAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAG<br>AGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGAC<br>GATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAA<br>TACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAA<br>GAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAA<br>TATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTAT<br>CCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGA<br>CACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGAC<br>TAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCACA<br>TCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAG<br>CTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAACCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCA<br>TCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAAT<br>TAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAA<br>ATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGA<br>TCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACC<br>CAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGA<br>TCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAA<br>CAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAAT<br>TATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTG<br>CTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGG<br>ACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAA<br>AGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACC<br>CTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATC<br>AAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAA<br>ACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGC<br>TCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGG<br>TACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAG<br>AGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATC<br>AAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAG<br>CCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTAT<br>TGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACC<br>GGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTC<br>AATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGAT<br>AAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGT<br>GAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGC<br>TCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAAT<br>TTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGC<br>ATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGT<br>ACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAA<br>AAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCT<br>TATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAG<br>GCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGC<br>AAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAAT<br>GAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCA<br>AAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCAT<br>TAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAG<br>TCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTTTAAATCATGCTGCT<br>ATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAA<br>AATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTC<br>AGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCA<br>CACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCA<br>TGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAC</font><font color="green"><u>CACTCACA</u></font>aatctctctctctaacaaagacaggataagtctgagacaatggaatctatctagccttaactcaattaacactgtgggtgttttgat<br>tgcctctgcattttcatggcaaatgatactacatttctatttgatagtgatacaaaatttaatttgaaaaagtccatttacattaaaaaactgggttgat<br>ttaaagacattagcaaacgatggtacgggtggtagctggataaggcaaataaaatacagggccctccagaatattggagtttgtgggagaccatgtttgc<br>agataaagcaggaaagatccaaggtcccagattgaagtggggactatctttcactctcagtcgccctagacgactcattgcattagtggagaaagcactg<br>tatca	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr9	18568671	18569517	2000286	0	+	5204; RIP_L1_chr9_018_01	NA	NA	LINE	L1	L1PA2	atgaatataccttttcaaaccacattctccccctttctctccctctctccctcctagattctgacaatcatccccagtgggtgattgtgttatccctctt<br>caccctgcatctcagactgagaaacactgggattcttatttgctcactatcattctagactagatgaagttagagagaaggctgagctagggaggcaatt<br>tgtcattgtatgaatagttaaagacaagaggctctggaatcataccatctaggttggaatctaagctccaccactcattggcatgtgcctttgagcaagt<br>tcctaagcctcagttttgtcatctgcaaaatgaggataataattgtaaaaataggattagaaggaagattaagtaatcaagtgcatt<font color="green"><u>TAAAGTGCTTACT<br></u></font><font color="red">ATGCCGCAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAGTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTAT<br>TTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCA<br>CATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGA<br>TGGCCAGTGATGATGAGCATTTTTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCATGTTGCGGCATTATTCACAA<br>TAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCGTAAAAAA<br>TGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACGCCGCATATTCTCA<br>CTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACGCTGGGGACTGTGGTGGGGAGGGGGGAGGGGGGAGGGATAGC<br>ATTGGGAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATG<br>TACCCTAAAACTTAAAGTATAATTAAAAAATAAATAAATAAAAAAAA</font><font color="green"><u>TAAAGTGCTTACT</u></font>atgagcttgataaatactacttgtattaattgtacccaag<br>ttatgtcttatctttttctttttcttccttagagcctttctgagtacatgatttaatatgggtacacatacgaaaggggcactgacttcccaatgaatga<br>gcagaccttctgttaatttcctattgcagtcatcttttgcagatagctccacattgtacaattatcaactcctgatccagggcagtgaattgcatcctgt<br>acagagttaatgagccatcacaaataggatcagttctattagtactgctgttattcatttattttcattatccaaattacccctatttatatttgttgta<br>aagcacaaagccggtttctgttttaaatatattttttaaaagagtag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ADAMTSL1:NM:001040272:4/29	
0	chr1	65682227	65682480	2000287	0	-	31021; RIP_L1_chr1_065_01	NA	NA	LINE	L1	preTA	atttccctccccaccccaccccccgcccgcctccacccttctgaaagtttgttaatctgagtctataaaagaaactgacaatagccagattcatgggaga<br>caaagtatacacatttatcacatgcacatgtgcacaggagccacacaaactacgagactcgaagaatcaaagaagggccagatagttgaagcttcaatag<br>cattttaagctacagaaagaaatagggtcctaaaggctcctgcagggaggtagcaacacattatgagagggtgtggggaggaaaggcatggtgagcaaag<br>gctgtcttgtgatgcagatgaagtctctctgggagcagccctcagaaggaagagatgcagcaaaagtttcactgtccaaacttt<font color="green"><u>AAAAGTATCAGGTCTT<br></u></font><font color="red">AACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGG<br>GAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACC<br>TGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGTATCAGGTCTT</u></font>tagtctccttttcttattgagttccttttt<br>cctgatccagataggtggacctcagagaaagcctctgtgtctgttctttacctcaccaatgcagatttcctctacagatgcaaatctacccccaaaagaa<br>cagcttttcagaactattcctgtctgctacttctctgaataaccaactgaaaatacgccaaagaagtatattttgaggtgacatattttggtttcccaca<br>gtgtcaggcactattctaggtactatatgaagaaaggattccaaaagaagaccgagatgtggctctgtccaatatgaactcatccaatcatttttccagt<br>attcattgaatgcttaatactttatcccttagtatttaaatatagtatatcttt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:LEPR:NM:002303:2/20	
0	chr8	109217152	109217153	2000288	0	+	18748; 4028; RIP_L1_chr8_109_01	NA	NA	LINE	L1	preTA2	gggaaaaagttcttgagctctgctgtatcacaatgggcatatacttaacaattccgtaatatacacataaaaactgttaagtaagtaaatctatggtatg<br>tgtttttaaccacaatttaaaatttttttaatttaaaaatttaaagccaaaaataactacatcaggtgtgtcaagctcaacaccataaacttatttctgt<br>tcactcccacctcaggtgactgctggtctgcatgagacagtcagttcttagtaaaaactaaaagtgggtcatggttcttttttttatgacatatacctat<br>gtctctatgtctgcgccaatgtgtttatttttactgaacacacattgacatcatttgaaagtcctgaggcaattagggaaaaacta<font color="green"><u>AAAATGTCAGGTAA<br></u></font><font color="red">TTGGTGGGGAGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCCAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATA<br>CATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATTAAAAAAAAAAAAAAAGTTAAAAAAAAA</font><font color="green"><u>AAAATGTCAGGTAA</u></font>atg<br>ctttactttctctctacccaaggagtagtttgctttccaaacaagtcttctactagatagcctgttttatatttcttcatagtacttatttcactggcac<br>tatacaatatagtgggctattgatctactgcatgatagtataatttaattccatgagagcacaaatttgttttttttactactatatcctcagcacgtgg<br>aagagtttccagcacatagtaggtgctcaattaacacttgttgaattaatgaataattcctctgatagtgggaaggacaagaaaaaaaacagattgtccc<br>aagcttagccatcaaagtaaatgtgcttacattgaatagaaattgtctttggaaggatagaattctttgatctttttgcttgc	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	219894445	219894446	2000289	0	-	chr1-2182;1104685475315; RIP_L1_chr1_218_01	TGGCTCAGCGCTACTAGAGA;AAGGCTCTTTGCCATCAAAA	TGCATTGATGTCTGGCTTCT;AGGGCAGGCCATAATATTCC	LINE	L1	L1HS	agagtgagaccctccaatccagtcacctcccaccaggccccacctccaacattgggaatcacatttcaacatgagatttagaggggactaacgttcaaac<br>catgtcagttccctaggagagaagtttagaacatgttttgaaggaggaagggacatattgtttaccagggcaggccataatattcccggtgaaggattaa<br>gaaggttgaaaggtagaaatctgtaaggcagatgcaaacaaatgataagtcgactggctcagcgctactagagaggtggagacataatggtggaaagaaa<br>taaatagcaagtcaaagaacttcggtggcccacctatgtctaaaaataaatacatacatacatacatacataaaaatgtgtt<font color="green"><u>AAAAAGATTGGATTGGTT<br></u></font><font color="red">TGCCTTGAGGGAAGTTACGCTTATTTTTTTTTTTTTGTCTTTTGTTTTGTTTTTTTTTTCCTTTTTCTGGAGAACGGGGTCTCGCTATATTGCCCAGGCA<br>GGTCTCGAACTCCTGGGCTCAAGCTATCCTCCCGCCTCTTAGCCTCCCTGAGAGCTGGGATTACAGGCGTGAGCCACTGCAAATGTCCAACAATGATAGA<br>CTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAA<br>ACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGA<br>AGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATATCTAATGCTAGATGACACGTTAGTGGGTGC<br>AGAGCACCAGCATGGCACATGTACACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAATAAAAAAAGAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAAGATTGGATTGGTT</u></font>gctttgaatcaacctggagagaaacttagtcttaatagcgatgagcagtttggcaagaatcagagaagccag<br>acatcaatgcagaccacagatagttttgatggcaaagagccttcatcaggagctttatttcatgtttgtattttattttttaaagtcaactcttcttttt<br>ttaaaaaaaagttattgaagtgtaatttacctgtaataagagaggcttgttttaagagtacaattccggccgggcgcggtggctcacacctgtaatccca<br>acactttgggaggctgaggcaggcggatcacgaggtcaggagatcgagaccatcctggccaacacggtgaaaccctgtctctactaaaaatacaaaaaag<br>tagccgggcg	Other;Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA;NA	64;55	857;976	229;349	NA;NA	intergenic	
0	chr5	89486538	89486539	2000290	0	+	chr5-8948;1104685647419; RIP_L1_chr5_089_01;AC208153	ACTCCCTGGCAGTCAACAAT;ACTCCCTGGCAGTCAACAAT;NA	CCATGTTTACCTTCTTTGTGAGC;AAAACCTCGCTGTTCCTTGA;NA	LINE	L1	L1HS	tgcctgcttggagggttatttattctactattaataaactttaggattgacaagaaattcttgcattgctccaatctgcaacaaatctacctaccatgtg<br>ttagtacagctttcaaaatatgattttataattaacattaataaatatttgctgggtacctactatgttccagaccctgtgaaaggtgctagaaatatat<br>gaaaatctcattaccttaaaattgtttccatacacaaaaattccaggagcagactttagtcttgccaaggtgtcattttagtgactgacatggatcacca<br>ccccctggcagtcaacaatgacagcaagcaaagctgcttaacagggagttactgatcttccagctgtattttgcttgtcactgcttt<font color="green"><u>GAAAGATGCTTAC<br></u></font><font color="red">GGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCAACGCAGAAGACGGGTGATTTCAGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGAGGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACGGCAAGGCCAAGGAGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCTGGGAAGCTCG<br>AACTGGGTGGAGCCCACCACAGCTCAAGGAGGTCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCT<br>CTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGT<br>GGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACAGCAGGGTATTCCAACAGACCTGCA<br>GCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGA<br>TAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCA<br>ACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAG<br>GCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAA<br>GGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCGATGGAAGATGAAATGAATGAAATGAAG<br>CGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTG<br>TACCTGAAAGTGATGGGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCA<br>GATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAA<br>ATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAG<br>AGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATA<br>CTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTAC<br>CAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAG<br>GATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCC<br>ATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAA<br>AAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGAT<br>CAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTT<br>AGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAAC<br>TCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAGTATACATTTTTTTCAGCACCACACCACACCTATTCCA<br>AAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGA<br>ACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTCCATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAA<br>ATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAA<br>ATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAG<br>AAGGCAAGAAATAACTAAAATCGGAGCAGAACTGAAGGACACAGAGACATGAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGA<br>TCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGA<br>TCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATAC<br>TCTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGA<br>GTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAGCTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGG<br>AATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATG<br>AACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGA<br>TGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAA<br>AGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAA<br>CCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACA<br>TAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGA<br>CATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTGCAA<br>AAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAG<br>GAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCC<br>ATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTC<br>TTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCA<br>TCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGA<br>GCCCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGC<br>TGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTA<br>GACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGTAATGGC<br>AACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGG<br>GAGAAAATTTTCACAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCA<br>AAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGTAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGA<br>AATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAA<br>ATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCAT<br>TTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCAC<br>AATAGCAAAGACTTGGAACCAACCCACATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAA<br>AATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCT<br>CACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGGGGAGGGGGGAGGGATA<br>GCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAAACTGCACAATGTGCACA<br>TGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAATTAAAAAATTGTAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGATGCTTAC</u></font>tttgaagatct<br>ccatcatgtggaagagaaaaggtacaatgtaacctataaatcaaggaacagcgaggttttagagacacaagtaaaccaccatgtaagtaactcagagagc<br>tcacaaagaaggtaaacatggtgaataaaataaagagttcgtgaacttgatgataaaggaatcaatttcttctccaataaacattttgtaagcactgtac<br>caagaatagaagaaaagagtctccgtcccaccccttgcccaaaggaagaaagagctaatcacaggagatgctccagaatgcctaaagtatcataatgaat<br>agttctactaatgtccacttttcaatggaaagtatggacctcttagattcgcttccaaattcctcccaaaatgact	Other;Venter;OTHER	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA;NA	64;55;NA	6322;6260;NA	235;172;NA	NA;NA;NA	intergenic;intergenic	
0	chr6	97538307	97538308	2000291	0	-	L1-6-3; RIP_L1_chr6_097_01	NA	NA	LINE	L1	L1M2_orf2	caatgagaacaaagacacaacatatcaggatctctgggacgcattcaaagcagtgtgtagagggaaatttataccactaaatgcccacaagagaaagcag<br>gagagatctaaaattgacaccctaacatcacaattaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataagtaaga<br>tcagagcagaactgaaggaaatagagactcaaaaaacccttcaaaaaatcaatgaatccaggagctggttttttgaaaagatcaacaaaattgatagacc<br>gctagcaagactaataaagaagaaaagagagaagaatgaaatagatgcaataaaaaatgataaaggggatatcaccactgatcccat<font color="green"><u>AGAAATACAAACT<br></u></font><font color="red">ACTGGGGGGTGGAGCCAAGATGGCCGCATAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGAGCGATGCAGAAGACAGGTGATTTCTGCATTTCCAACTG<br>AGGTACTGGGTTCATCTCACTGGGGAGTGTCAGGAAGTGGGTGCAGGACAGTGGATGCAGTGCACCAAGCATGAGCTGAAGCAGGGCGAGGCATCGTCTC<br>ACCCAGGAAGTGCAAGGGGTCAGGGAATTCCCATTCCTAGTCAAAGAAAGGGGTGACAGATGGCACCTGGAAAATCGGGTCACTCCCACCCTAATACTGT<br>GCTTTTCCAACGGTCTTAGCAAATGGCACACCAGGAGATTATATCCCGTGCATTGCTTGGAGGGTCCTACACCCACGAAGCCTCGCTCATTGCTAGCACA<br>GCAGTGGGAGATCCAACTGCAAGGCAGCAGCCAGGCTGGGGGAGGGGCGCCCGCCATTGCCAAGGCTTGAGTAGGTAAACAAAGCAGCCAGGAAGCTCGA<br>ATTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGACTCCACCTCTGGGGGCAGGGCACAGCCAAACAAAAGGCAGCAGAATCCTTT<br>GCAGACTTAAATGTCCCTGTCTGACAGCCTTGACGAGAGTAGTGGTTCTCCCAGCATGCAGTTGGACATCTAAGAACGGACAGACTGCCTCCTCAAGTGG<br>GTCCCTGACCCCTGAGTAGCCTAACTGGGAGGCCCCCCCCATTAGGGGCAGACTGACACCTCACACGGCCGGATACTCCTCTGAGACAAAAATTCCAGAG<br>GAACGATCCGGCAGCAACATCTGCTGTTCACCAATATCTGCTGTTCTGCAGCCTCCACTGGTGATACCCAGGCAAACAGGGTCTGGAGTGGACCTCCAAC<br>AAACTCCAAAAGACCTGCAGCTGAGGGTCCTGACTGTTAGAAGGAAAACTAACAAACAGAAAAGACATCCACACCAAAACCCCATCTGTACGTCACCATC<br>ATCAAAGACCAAAGGTAGATAAATCCACAAAGATAGGGAAAAAACAGAGCAGAGAAGCTGGAAACTCTAAAAATCAGAGCACCTCTCCTCCTCCAAAGGA<br>CACAGCTCCTCACCAGCAATGGAACAAAGCTGGACGGAGAATGACTTTGACGAGTTGAGACAAGAAGGCTTCAGACAATCAAACTACTCTGAGCTAAAGG<br>AGGAAGTTCGTACCCATGGCAAAGAAGTTAAAAACCTTGAAAAAAAATTAGATGAATGGCTAACTAGAATAACCAATTCTAGAGAAGTCCTTAAAGGACC<br>TGATGGAACTGAAAACCAAGGCACGAGAACTACGTGACAAATGCACAAGCCTCAGTAGCTGATTCGATCAACTGGAAGAAAGGGTATCAGTGATGGAAGA<br>TGAAATGAATGAAATGAAGCAAGAAGAGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAACAAAGCCTCCAAGAAATATGGGACTATATGAAAAGACCA<br>AATCTACGTCTGATTGGTATACTTGAAAGTGACGAAGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATGATCTAGGAGAACTTCCCCAACCTAG<br>CAAGGCAGGCCAACATTCACATTCAGGAAATACAGAGAATGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAA<br>AGCTGAAATGAAGGAAAAAATGATAAGGGCAGCCAGAGAGAAAGACCAGGTTACCCACAAAGGGAAGCCCATCAGACTAACAGCTGATCTCTTGGCAGAA<br>ACTCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAA<br>GTGAAGGAGAAATAAAATCTGTTACAGACAAGCAAATACTGAGAGATTTTGTCACCACCAGGCCTGCCCTACAAGAGCTCCTGAAGGAAGCACTAAACAT<br>GGAAAGGAACAATCGGTACCAGCCACTGCAAAAACATGCCAAATTGTAAAGACCATCAAGGCTAGGAAGAAACTGCATCAACTAACGAGCAAAATAACCA<br>GCTAAGATCATAATGACAGGATCAAATTCACACATAACAATATTAACCTTAAATGTAAATGGGCTAAATGCTCCAATTAAAAGACACAGACTGGCAAATT<br>GGATAAAGAGTCAAGACCCATCACTGTACTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCCA<br>CCAAGCAAATAGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAGGCCATTACT<br>TAATGGTAAAGGGATCAATGCAACAAGAAGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTTAGAGA<br>CCTATAAAGAGACTTAGACTCCCACACAATAATAATGGGAGACTCTAACATCCCACTATCAACATTAGACAGATCAATGAGACAGTTAACAAGGATATCC<br>AGGAATTGAACTCAGCTCTGCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTCTTCTCAGTGCCACACTG<br>CACTTATTCCAAAATTGACCACTTAGTTGGAAGTAAAGCACTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTGTCTCTGAGACCACAGTGCA<br>ATCAAACTAGAACTCAGGATTAAGAAACTGACTCGAAACCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGCATATAACGAAA<br>TGAAGGCAGAAATAAAGATGTGCTTTGAAACCAATGAGAACAAAGACACAACATATCAGGATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATT<br>TATACCACTAAATGCCCACAAGAGAAAGCAGGAGAGATCTAAAATTGACACCCTAACATCACCATTAAAAGAACTAGAGAAGCAAGAGCAAACACATTCA<br>AAAGCTAGCAGAAGGCAAGAAATAAGTAAGATCAGAGCAGAACTGAAGGAAATAGAGACACAAAGAACCCTTCAAAAAATCAATGAATCCAGGAGGTGGT<br>TTCTTGAAAAGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAGAAAAGAAGAAGAATGAAATAGACGCAACAGAAAATGATAAAGGGATA<br>TCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAACACTATAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCC<br>CGACACATACACCCTCCCAAGACTAAATCAGGAAGAAGTTGAATCTCTGAATAGACCAATTAACAGGCTCTGAAATTGAGGCAACAATTAATAGCTTACC<br>AACCAAAAAAAGTCCAGCACCAGATGGATTCACAGCTGAATTCTACCAGAGGTATATGGAGGAGCTGGTACCATTCCTTCTGAAACTATTCCAATCAATA<br>GAAAAAGAGGGTCTCCTCCCTAACTCATTTTATGAGGCCAGCATCATCCTGATACCAAAGCCCGGCAGAGACACAACAAAAAAAGAGAATTTTAGATATC<br>TCTGATGAACATCAATTCAAAAATCCTCAATAAAATACTGGCAAACCTAATCCAGCAGCACATCAAGAAGCTTATCCACCATGATCAAGTGGGCTTCATC<br>CCTGGGATGCAAGGCTGGTTCAACATACACAAATCAATAAGCGTAATCCAGCATATAAACAGAACCAACGACAAAAACCATCTGATTATCTCAATAGATG<br>CAGAAAAGGCCTTTGACAAAATTCAACAACGCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACATATCTCAAAACAATAAGAGCTATCTA<br>TCACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTA<br>TTGAACATAGTGTTGGAAGTTGTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGAAAAAGAGGAAGTCAAATTGTCCCTGTTTG<br>CAGATGACATAATTGTATATCCAGAAAAGCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAGGCAACTTCAGCAAAGTCTCAGGATACAAAATCAA<br>TGTGCAAAAATCACAAGCATTCTTATGCACCAATAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAA<br>TACCTAGGAATCCAACTTACAAGGGACATGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAATGAAATAAAAGAGGATACAAACAAATGGAAGA<br>ACATTCCATGCTCATGGGTAGGAAGAATCAATATCATGAAAATGGCCATACTGCTCAAGGTAATTTATAGATTCAATGCCACCCCCATCAAGCTACCAAT<br>GACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAAGCAAAAAAGAGTCCGCATTGCCAAGTCAATCTTAAGCCAAAAGAACAAAGCT<br>GTAGGCATCATGCTACCTGACTTCAAACTATACTGCAAGGCTACAGTAACCAAAACAGCAAGGTACTGGTACCAAAACAGAGATATAGACCAAGTCAATC<br>TTGTCATATACCTAATGTTAAATGACAAGTTAATGGGTGCAGCACACCAACATGGCACATGTATACATATGTAACTAACCTGCACATTGTGCACATGTAC<br>CCTAAAACTTAAAGTATAAAAAAAAA</font><font color="green"><u>AGAAATACAAACT</u></font>gccatgagagaatactataaacatctctacacaaataaactagaaaatctagaagaaatgg<br>ataaattccttgacacatacaccctcccaagactaaaccagtaagaagttgaatctctgaatagaccaattaacaggctctgaaattgaggcaacaatta<br>atagcttaccaaccaaataaagtccagcaccagatgaattcacagctgaattctaccagaggtatatggaggagctggtaccattccttctaaaactatt<br>ccaatcaatagaaaaagagggaatcctccctaactcgttttatgaggccagcatcatcctgataccaaagcctggcagagacacaacaaaaaaagagaat<br>tttagaccaatatccttgatgaacat	Other	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intron:KLHL32:NM:052904:3/11	
0	chr7	110271982	110271983	2000292	0	+	chr7-1100;1104685587671; RIP_L1_chr7_110_02	TTGCCCTTCATCCTATGGTT;GTGGGAGAAGCAGAGATGGA 	GGAAATGTGGAGTTGGGAGA;CCTACGCAGAAGACAGAGTGG	LINE	L1	L1HS	tgtgtatttagaggcatgtacaaaatgctaaaggagactagaaggaaacttcataaaagagataaacatggaactagatcttgtaaggacataagagaga<br>aaatgtttcagacagcagcaattgcaaaataatggagtcatagaagagttcagtatgaaatggaaaccaaaaaaagtttagcagttttgcacccagaaaa<br>aaagaaaacggagaagggtaagcttgtaacaaacggatgggggtcttttatatgctaaggtatttgcccttcatcctatggttaatcaataggggagctt<br>tcagatgtattcaagccagatgacactgtagtttagaaagataaatctagtcctacgcagaagacagagtgggagataaagcacttagtggcaggg<font color="green"><u>AAGA<br></u></font><font color="red">CAGTAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAG<br>AAA</font><font color="green"><u>AAGA</u></font>aacttctacagcagtccagaaggagagatggtgaagctacaacctaaaagacagcatggaaatggcaaggatggacagtttctctcccaactc<br>cacatttccatctctgcttctcccacaaccaactatggccaggaaatttactggtcacagggttccattacatgtacaccaaggacaacataaaagtcgg<br>tggagtcaaagtgcaattaagaggattgaaagggggggcccagaaaaagaggcccaggcacaaagtttcctacttcctcattttatctaggaaattggat<br>ggctcttttatttccaaactctcatcagctgggaaagatttaaaaagtagcatgtgtcataactccaatatttcaatctaaaatccaaaaaagcagctgc<br>ttc	Other;Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA;NA	64;55	346;275	248;177	NA;NA	intron:IMMP2L:NM:032549:5/6	
0	chr8	83903249	83903250	2000293	0	+	chr8-8390;1104685024888; RIP_L1_chr8_083_01	TACTCATGGTCTCAGGACACC;GCAGTCAGATTTTTCTTCCAAAA 	GGTCATGTGAGTGAATGTTTGTC;TGCAAACCAGTCAGAGTGAAA	LINE	L1	L1HS	aaaaaaaacctactcacttaagcagaaaaaatgcccttgaactatgcgcttgttttattagaaatattcaatgaactgtgctctaaactaataaattttc<br>tagttttctcttgtactcatggtctcaggacaccgaaggcaaagagtttatattttgagattttttaccaaaataaaaataatggccctattgtattcca<br>attctgtaaatgaaaaatcttacacataaagcagaaataggaaatgattccaaaactggaatattattaatacattataaatatattacatattttaatt<br>caaaattaatctgcaaaccagtcagagtgaaagagagtaaaaacatgaatttttattgagtattggcaatagatttaagcacttt<font color="green"><u>AATTATAATGAATGC<br></u></font><font color="red">TGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGT<br>GTTCCTATTTCTCTGCATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGA<br>TTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTTGC<br>CCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAA<br>ATTTTCTCCCATGTTGTAGGTTGCCTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTAT<br>TCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCAT<br>AAAATATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATA<br>TTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGAAGG<br>GATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTCCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTG<br>CACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATTATAATGAATGC</u></font>attatttattccaaaaaatgttcgctaatgtttaaat<br>actactacatgcaaatgtcttgtatgaactatagaaaaatcaagtgagagtgacaaacattcactcacatgacctttgttttctgtagatactaatctca<br>aattttagttctctgaatttgaaaaaaatttttacaggctttttaagccaatatttttagacaagattttggaagaaaaatctgactgctttactgctca<br>aagaattttttttttaattttagaaaaaaaaatccttgaagaagaaataaaaggcttcagaagtcattgatacttttgactgtgactttaagttgttttg<br>atctacttcttaagtctatatctcttggaagctggctggattaagtgt	Other;Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA;NA	64;55	1250;1278	398;315	NA;NA	intergenic	
0	chr8	87384150	87384151	2000294	0	+	chr8-8738; RIP_L1_chr8_087_01	TCAGGGTCCTATTCCTACCA	AACCCCATTGAACTTAAGCAAA	LINE	L1	L1HS	ttttgtatttttagtacagacagggtttcaacatgttggccaggatggtctctatctcctgacctcacgatccgcccatctcggcctcccaaagtactgg<br>gattacaggcatgagccactatgctgggcctattattgctattttaaaattcattcaaataataaataaaaggttaaagtaaaaagtgcctcacttttaa<br>cttataacacagtaaataatataggtagctacaaccaacattggtgaatgaggacccactttggggtcctcaataatctttaagagtgtaaagatttctt<br>aagaccaaaaagcttgagaaccacctatctagaggatatttatcagggtcctattcctaccatagacaagctgaaacaaagagaatcttgagc<font color="green"><u>AAGGAAA<br></u></font><font color="red">CGTAGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAA<br>TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAA</u></font>tgaatggaatgacatcactttgagtcagtagcatcctgacaaggcagctcaatgccat<br>gagcccatggttgtgtgtcctctgagcttctccagttcttgtccattctcaggcccagctttcctgaataaatttcctatctttccaataaattgacttt<br>gcttaagttcaatggggttaatttctgttgactgcaatcaaatcatgctaatgaacacaatgtttagtaatatcctttttaaagttgtgtctgaaatctt<br>tcatttatagttcaaactcttttttgagttatttcctcaaactcaaggaggaaagttgttgtgggggggccacagcaacaaatgggaaatttaattggaa<br>aatccaattctgctctccctgggctactttaaacc	Other	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	63	378	250	NA	intergenic	
0	chr17	25422431	25422448	2000295	0	+	chr17-2542;1104685085786; RIP_L1_chr17_025_01	GACCCCTAGACTATGAAACTAC;CCTCGCCAGCATTTGTTATT 	ATAGCCATTCTAGCCAGGGTG;TGACCTTTCCCATCCCAGTA	LINE	L1	L1HS	ttgcaatgagccgagattgcgccactgcactccagcctgggtgacagagcgagattccatctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaattcaattt<br>aaaatggatcaaagacttaaatgtaagacccctagactatgaaactactgaagaaaacatgagggaaacacttcaggacattggtttaggcaaatatttt<br>atggggaagacctcaaaagcacaggcaacaaaagcaaaattagacaagcgggattctatcaaacttttaaaaagcttctgcagtgcaaaggaaacaatca<br>atggggtgaagagacaacttgcagaaggggagaaaatattttcaaactattcatctgacaagggattaatattcaaaatatataaggaactcaaac<font color="green"><u>AAAG<br></u></font><font color="red">CAATTATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAA<br>AAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAAT<br>TGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCA<br>ACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGG<br>ACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAAC<br>CACTATGAGATATCATCTCACACCATTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTA<br>CACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAACCATCC<br>CATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTG<br>GAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATA<br>TCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGA<br>ATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATA<br>CCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTT<br>AGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAGAA</font><font color="green"><u>AAAG</u></font>aaaaatcaaataattcaaatttaaaatgggtaaatgagctgaatagacatctctcaaaa<br>gaaaataaaaatggccaacaggtatttgaaaaaatgcttaacatcactaatcagggaaatacaaatcaaaaccacaatgaagtattatctcaccctggct<br>agaatggctattactaaaaagacaaaaaataacaaatgctggcgaggatgcagacaaagggaaactcttataccttgttggtgggatgtaaattagtaga<br>gccactattgaaaacagtatagaggtccctcaaaacactaaaaacagaactaccatatgatctaatctcactcaaagtatatatccaaaagaaaggaaat<br>aagtatgttaaagagatttctacattcccatgtttat	UCSC;Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA;NA	60;55	1685;2698	466;1473	NA;NA	intron:EFCAB5:NM:001145053:13/15	
0	chr1	143289654	143289810	2000296	0	-	L1-1-8; L1-1-12; RIP_L1_chr1_142_01	NA	NA	LINE	L1	L1PA5	gaacagctttaaatttggtttctcaaatgtctgtctaatggtttacaaaagtccagttactcaaatgaatttatcttacagtccggttttctattgttcc<br>atgctgtgcctcagtgacataaaccaagagtcagtatataaaaaagatttattcccactggtttataaccaaccaataactagtatgcctgttatatata<br>gttctgtgcattgggttgccagtctccttccttcttttgcctgatttttgttggaagtggagatgatgtaatgttatgggtcacttctattagtgtccct<br>ggactacagttctaccatctattttttaagctattttacctcgttattataagatctgcatatttgtgagcatcatttatgttattaat<font color="green"><u>AGTTAACATCT<br></u></font><font color="red">GGGGGGGTGGGGGAGGGATAGCATTAGGAAATATACCTAATGTAAATGATGAGTTAATGGGTGCAGCACACCAACATGGCACAGGTATACATATGTAACA<br>AACCTGCACGTTGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAAAAAAA</font><font color="green"><u>AGTTAACATCT</u></font>atggtagtcacttctttggttatgtcagagac<br>taaaatctgaaaatcagaaattcattctttatttcaggtgtgtgcatgctgttgtgttgatccctctcccctcccagaaaagtcattgtaggcccaagtc<br>gatgaagggacagactgtgaaagaacagatgcagagcatggactaagtatgcagtgcctactgaatcaaaaactttgctgaagttgcttttctgcgattg<br>tctaacattcctctgagtcaccttatctgctgcttaaaagccccaaagcattttcttaactgtcttgtggccattgttataaactctgctctgctcttcc<br>tgtgtcaactaccacacagtctgtttcattgcatggccctaaaggcagagccatttt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr1	241121584	241122024	2000297	0	+	L1-1-9; RIP_L1_chr1_239_01	NA	NA	LINE	L1	L1PA2	acagatttgctgtctatgtgctttgccaaacagagagagacaggggccattgagacatgatgaaaacagcttcttctgagacgggggaaaagaaaaataa<br>gaaatatgaacaaccacagtaggtccagcaacctttccacaaagccaggcactcaggagccacctgtcatgtcttaggccatttcgttcctacaagaacc<br>tcactgagattcatcttactactccacttttcagaggtgcaagttgaggctcagaaagctgcagtggcatccctagacacagctagtaggtagtagggtg<br>tgccttgaaagaaacagacactcgcctgctgaacagctgctccaggtgtagcaggacaagccgcagacaaaacccctcagacactgagtt<font color="green"><u>AAAGAAGTAA<br></u></font><font color="red">AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAATCATCATTCTCAGGAAACTATCTACAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAAAGTATAATAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAGTAA</u></font>gggctttattcggccgggagcttcggcaagactcacgtctccaacaacc<br>gagctcccagagtgagcaattcctgtcccttttaagggctcacaactctaagggggtctgcgtgagagggtcgtgatccattgaccaagcaggcggtacg<br>tgactgggggctgcatgcaccagcaattagaatggaacagaacaggacagggattttcacagtgcttttctatacaatgtctggaatctgtagataacat<br>agccgattaggtcaggggtcgatctttaactaccaggcccagggtgtggcgccgggctgtctgcctgtggatttcatttctgccttttagttcttagttc<br>ttctttctttggagacagaaattgggcataagacaatatga	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr1	86513575	86514285	2000298	0	+	chr1-8645; RIP_L1_chr1_086_01	GTAGACTAAGTCCAATGCAACAG	GAGAACTTCCAAACCCAGTG	LINE	L1	L1HS	gtattgataaaatccctcagcttttgtttgtttgggaaagtatttctccttcatgtttgaagaatattttcactggatatactattctggggtaaaagtg<br>ttttttttctttcagcactctctcctggcctgtaaaatttgcactgaaaagtctgttgccagacgtattggacctccattgtaggttatttgcttctttt<br>atcttgctgcttttaggattctttctttacccttgacctttgaaagtttgactattagatgtcttgaagatgggtctggtattgatgaaatccctcagct<br>tttgtttgtctgggaaagtatttctccttcacgtttgaagaatattttcctggatatactattctggggtaaatgtgtttaacttctttaagtt<font color="green"><u>AAATCT<br></u></font><font color="red">ACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTA<br>AACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCC<br>AAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCA<br>ACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGA<br>TGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACA<br>TGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACA<br>TTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAATCT</u></font>gcttggtattctataaccttcttatacttagatcttgatatctttcactgggtttggaagttctctgttactatctctttgaa<br>taaactttctacccctatctctttctctacctcctcttaaaggccaataactcttagattttcccttctgaggctattttctaaatcccacaggcaagct<br>tcattgttttttattcttttttttcttttgtctcctctgactgtatattgccaaatagcctgtcttcaagctcactaattctttcttctgcttcatcaat<br>tctgctattacaaggctctgatgcattcttcagaaagtcaattgcatttttcaactccagaatttctacttgattcttactaattatttcaacctttgtt<br>agatttatctg	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	64	1655	938	NA	intergenic	
0	chr1	56603713	56607549	2000299	0	+	chr1-5654; RIP_L1_chr1_056_01	CTGTAATGAAAGGGCCCAGA	TTTCGCCATCAATCTTTGAG	LINE	L1	L1HS	gaagagttccctcttgcttgggggacatgagtcttttgttttattcaggccttcgactgattggatgaggcccattcacattaaggagggtaatctgctt<br>catgtaaagtctacagatttaaatgttaatctcatccaaaaacatcctcaaagaaacctccagaataacgtttaaccaaatatttgggcactgtgatcca<br>cccaagctgacatataaaactaaccatcagagactccaatagatgaagatagagacagaaatacatatacatacatttatttattttagctctgtaatga<br>aagggcccagaagcaatgataccccagtagcagagagcacatattatgtctacatcttgatttctaaataccattctccact<font color="green"><u>AAAAAGAACCACTGCCTC<br></u></font><font color="red">GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATGTGGAGAAAGCTGAAACTGGATCTCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>CCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAATGAACAGGCAACCTACAAAATGGGAGAAAAT<br>TTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATATTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGAACCACTGCCTC</u></font>ttagagaaacagctgattctggctctggggcaaagaaaatataag<br>gtaagtcgagaatctcttgttgtcagaaaacaaagaggtactcaaagattgatggcgaaatatcaaaagaacataggaattggtttgaaggaattcccac<br>tggtcaaatcaattgggaaatcaaaaagaatagtgataataattcacagtccacttaagaataagaaagaaagaagaatccataagatcatgataataaa<br>tataaaatttaaagtaggaaagaaggaagttgttctttgaaatagttactactaggaaaaggaggaatattgggttcaactctatggtcttcaagttttt<br>tctttttaagtgaaagcaagtttattaaggaagtaaa	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	60	4069	214	NA	intergenic	
0	chr2	176054929	176060967	2000300	0	-	chr2-1761; RIP_L1_chr2_176_01;AC217067	CACACGCATTTACACTGAAGC;NA	CAGTCTAATGGGCATGACAAAA;NA	LINE	L1	L1HS	acttgggcaattatactgtgcctcaattattttatctagaaaatggctactataatgatgatgataataataataataatatcacttattttatgtgact<br>gttatcatggttaaacaagttatttctccccttctctcaactagatatttaaatacacatgtactctaaataccaaccatgacaggtagaattcagtgta<br>ttttctttaacctaaatgccctctttcaagcaaatgactttttcattaatggcttcataatttcatgttttgagctgccaaatatgtttcttgtttcaca<br>cgcatttacactgaagcattgaaagaatcctttagctctacaaccatggtgacttgataccagcacaatcagtttggaagtttttt<font color="green"><u>AAACATTTATTTTG<br></u></font><font color="red">GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCG<br>GGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAA<br>GCGCAAGGGGTCAAGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGA<br>CCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAG<br>ATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGCA<br>GCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTA<br>AGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGAC<br>TCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACATGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCC<br>TGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAA<br>AGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAATGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAG<br>CTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTT<br>GAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCCGAAAACCAAGGCTCGAGAAC<br>TACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAA<br>GTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGT<br>GATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAA<br>TACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGC<br>AGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGACAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACA<br>AGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCA<br>AAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGGTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGG<br>GGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACA<br>CATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGAATACCCAGGAATTGAACTCAGCTCTGCA<br>CCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACATCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAAT<br>TGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAA<br>GACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>CAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGGTG<br>GTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAAATAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTT<br>TATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATTGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAAAGCCCTCAGAA<br>ATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGAC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACAC<br>TTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>CATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCACTATTCACAATAGCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCACAGG<br>TGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG<br>ATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAA<br>AACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACATTTATTTTG</u></font>cactctgagtgatatcaaaatacctttagagcagttaacttagtttg<br>tatatattcatttgagtgacaataatgttttgtcatgcccattagactgtttctagtttcaatcacaattatatcaccagccttaatactcaataaatac<br>ttgttaattaaatggatcaatgaataaattttaaaaagcagactgatatgttttgctaaagttacttgtcagtcaaatgctcttttttaaaaaattatat<br>ctgaatcatacctgaatcctgaaagtctgatttcagagtttagaatttttcagaatttataatttttttcatttttgaaaagttaatactctatacatat<br>tttatatcatatgacatctacatcagggcctgggcacaa	UCSC;UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	63;NA	6253;NA	200;NA	NA;NA	intergenic;intergenic	
0	chr2	97199739	97201211	2000301	0	+	L1-2-14; RIP_L1_chr2_097_01	NA	NA	LINE	L1	L1PA2	caatgctatagactaccattgactttcttcacagaattagaaaaaactactggaaatttcatatggaacaaaaaaagggcccatatagccaagacaattg<br>taagtaaaaagaacagagctggaggcatcacgctacctgacttcaaactacactacaaggctatagtaatgaaaacagcatggtacagctaccaaaacag<br>tgatatagaccaatggaatagaacagaggcctcagaagcaacaccatacatctacaaccgtatgatctttgacaaacctgacaaaaagcaatcagtgggg<br>aaaagattacctatttaataaatgatgttgggaaaactggctagccttatgcaggaaactgaaactggaccccttccttacaccttat<font color="green"><u>ACAAAAATTAAC<br></u></font><font color="red">GGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGCTATAGATCAATGGAACA<br>GAACAGAGCCCTCAGAAATAACGCTGCATATCTACAACTATCTGATCTTTGACAAACCTGACAAAAACAAGAAATGGGGAAAGGATTCCCTATTTAATAA<br>ATGGTGCTGGGAAAACTTTCTACATAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTCATACAAAAATCAATTCAAGATGGATTAAAGA<br>TTTAAACCTAAAACCATAAAAGCCCTAGAAGAAAACCTAGCCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAA<br>TGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAATACAAAAT<br>GGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCAT<br>CAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGA<br>GAAATGCAAATCAAAACCACTGTGAGATACCATCTCACACCAGTTAGAATGGCAGTCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAG<br>AAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACC<br>ATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTC<br>ACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGATTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAA<br>AAAATGATGAGTTCATGTCCTTTGAAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATT<br>CTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTGGGGGGAGGGGGGAGGGA<br>TAGCATTGGGAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCA<br>CATGTACCCTAAAACTTAAAGTATAATTAAAAAAAAAAAGTGTTCTGTAAAAAAAAAAACAAAAACAAAAAAA</font><font color="green"><u>ACAAAAATTAAC</u></font>tcaagataaattaaa<br>gacttaaacgtttaagtgagacctaaaaccataataaccctagaagaaaatctaggcaataccattcaggacattggcatgggcaaagacttcatgacta<br>aaacaccaaaagcaatggcaacaaaagccagaattgacaaatgggatctaattaaactaaggaacttgtgcagttttatttgggagtgtgcatgaggtac<br>ctctgagtttcaaaaatgaagaaagtaagtggtcatgctttcctgactctttggtagacacagccttttaagacggtgattctgagctgttacggttttg<br>ggtttcctataatactgaagcttactgctgacatgtaatcaagagcttgaattaatttaaaaaaatcacccaa	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr2	195760077	195760330	2000302	0	+	chr2-1958; RIP_L1_chr2_195_01	ACAGTGTCCTACAGCAACCAG	GACCACCAGCTGTCACACAC	LINE	L1	L1HS	cctcctatttggaattagtttcagcaatgagttcctccagcttctaaaatgtcctgccattcctcatctttcatctttcatctttgtcttgcgcagatgc<br>cttccattttcccactcatttcacgcaacctcagataggattctacatcctgactgactcctcagaactcaattactgaccctaaggcctccactgagtg<br>gttattatgggaattagctgatataattataataaatatgaagcatttttcactatgtaaggaacatcaaagacactcaattaatggcaactgctactag<br>atacagtgtcctacagcaaccagcaaccagttgtaaagtaaaagcaaactgatgcaaataattgctttgttgaccaacagctt<font color="green"><u>AAAAAATAGGTTGGCTG<br></u></font><font color="red">CGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGCAAGGGGAATATCACACTCGGGGGACTGTGGTGGGGTCGGGGGAGGG<br>GGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACTTATGTAACTAGCCTGCAC<br>AATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAACATTAAAA</font><font color="green"><u>AAAAAATAGGTTGGCTG</u></font>ttttatttttatttaattagctaagcatt<br>tagtgtcacaaacagaatcaatatcagtgtgtgacagctggtggtcacccttatgttcattatgtttttatataggaacaattttcacatctgcagaaaa<br>aaaaaggaggcattagagagaaaagttgaatataagtagggtaagcatatgtcctcattacttgtgacagtaccagtgaatacctgttatcctagcatta<br>ttattaatagtggccagtttcactctccatcatggcattatccaactgaattttctgtggtgataaaaatgttctctatccaggctacccaatatggtag<br>ctactagtcaacgtggctattgagccttcaaaatgtgactaatgcggctcaatt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	64	444	174	NA	intergenic	
0	chr2	97204011	97208294	2000303	0	+	L1-2-16; RIP_L1_chr2_097_02	NA	NA	LINE	L1	L1PA2	acattatttcattgatgtgtatgtttttgcaaaagtggacgaagagacagtgagaaagtcgaactgctgaatccaggaaatgtaaaaacatcaggagtct<br>tcatgagtataaataaaatgatttttaaaattataactcttagattaagtgaactcacttcagatgcatttagaatatttgcataagggatgatttgatt<br>tttggctgctccaggaactactggaagcaggaaagagtgatagaattgggataaaccacagtgactcattgctcctctttgttaccattgggcaccagag<br>gtatatgttttgttgacattggttattcaaatgagataaacgtgaatatgcatacattggctttgtttttcaaggagctattggat<font color="green"><u>AAAATAGCAACTTA<br></u></font><font color="red">GATATATAATCATGTCATCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTAATTGCCCTGGCCAG<br>AACTTCCAACACTATGTTGAATAGGAGTGGTGAGAAAGGGCATCCCTGTCTTGTGCCAGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATG<br>ATATTGACTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAAATATGTCCCATCAATACTGAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAA<br>TTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCATATATT<br>GAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGTTTTGCCAGTATTTTATTGAGGATT<br>TTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTTGTTGTGTCTCTGCCTGGCTTTGGTATCAGAATGATACTGGCTTCATAAAATG<br>AGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCC<br>ATCTGGTCCTGGACTCTTTTTGGTTGGTAAGCTATTGATTATTGCCACAATTTCAGATCCTGTTATTGGTCTATTCAGAGATTCAACTTCTTCCTGGTTT<br>AGTCTTGGGAGAGTGTATGTGTCTAGGAATTTATCCATTTCTTCTAGATTTTCTAGTTTATTTGCGTAGAGGTGTTTGTAGTATTCTCTGATGGTAGTTT<br>ATTTCTGTGGGATCGGTGGTGATATCCCCTTTATCATTTTTTATTGCGTCTATTTGAATCTTCTCTCTTTTTTTCTTTATTAGTCTTGCTAGTGGTCTCT<br>CAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGATTCATTAATTTTTTGAAGGGGTTTTTGTGTCTCTATTTCCTTCAGTTCTGCTCTGATTTCAGT<br>TATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCTCTTGCTTTTCTAGTTCTTTTAATTGTGATGTTAGGGTGTCAATTTTGGATCTTTCCTGCTTT<br>CTCTTGTGGGCACTTAGTGCTATAAATTTCCCTCTACACACTGCTTTGAATGTGTCCCAGAGATTCTGGTATGTTGTGTCTTTGTTCTCATTGGTTTCAA<br>AGAACATCTTTATTTCTGCCTTCATTTTGTTATGTACCCAGTAGTCATTCAGGAGCAGGTTGTTCAGTTTCCATGTAGTTGAGCGGTTTTGAGTGAGATT<br>CTTAATCCTGAATTCTAGTTTGATTGCACTGTGGTCTGAGAGATAGTTTGTTATAATTTCTGTTCTTTTACATTTTCTGAGGAGAGCTTTACTTCCAAGT<br>ATGTGGTCAATTTTGGAATAGGTGTGGTGTGGTGCTGAAAAAATGTATATTCTGTTGATTTGGGGTGGAGAGTTCTGTAGATGTCTATTAGGTCCACTTG<br>GTGCAGAGCTGAGTTCAATTCCTGGGTATCCTTGTTGACTTTCTCTCTTGTTGATCTGTCCAATGTTGACAGTGGGGTGTTAAAGTCTCCCATTATTAAT<br>GTGTGGGAGTCTAAGTCTCTTTGTAGGTCACTCAGGACTTGCTTTATGAATCTGGGTGCTCCTGTATTGGGTGCATATATATTTAGGATAGTTAGCTCTT<br>CTTGTTGAATTGATCCCTTTACCATTATGTAATGGCCTTCTTTGTCTCTTTTGATCTTTGTTGGTTAAAAGTCTGTTTTATCAGAGACTAGGATTGCAAC<br>CCCTGCCTTTTTTTTGTTTTCCATTTGCTTGGTAGATCTTCCTCCATCCTTTTATTTTGAGTCTATGTGTGTCTCTGCACGTGAGATGGGTTTCCTGAAT<br>ACAGCACACTGATGGATCTTGACTCTTTATCCAATTTGCCAGTCTGTGTCTTTTAATTGGAGCATTTAGTCCATTTACATTTAAAGTTAATATTGTTATG<br>TGTGAATTTGATCCTGTCATTACGATGTTAGCTGGTTATTTTGCTCGTTAGTTGATGCAGTTTCTTCCTAGTCTTGATGGTTTTTACATTTTGGCATGAT<br>TTTGCAGAGTCTGGTACCGGTTGTTCCTTTCGATTTTTAGCGCTTCCTTCAGGAGCTCTTTTAGGGCAGGCCTGGTGGTGACAAAATCTCTCAGCATTTG<br>CTTGTCTGTAAAGTATTTTATTTCTCCTTCACTTATGAAGCTTAGTTTGGCTGGATATGAAAATTGTATATCTAGAAAACCCTATTGTCTCAGCCCAAAA<br>TCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTGCAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAG<br>AGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGAACTCTTCAAGGAGA<br>ACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTCCATGCTCATGCATAGGAAGAATCAATATCGTGAAAATGGCCAT<br>ACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGCCTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATAGAAC<br>CAAAAAAGAGCCCACATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAA<br>CCAAAACAGCATGGTACTGGTACCAAAACAGAGCTATAGATCAATGGAACAGAACGGAGACCTCAGAAATAATGCTGCATATCTACAGCTACCTGATCTT<br>TGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAAAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGTATC<br>CCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGACTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGCCATTAC<br>CATTCAGGACATAGGCATGGGCAAGGACTTCATGTCTAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAGATGGGATCTAATTAAACTAAAG<br>AGCTTCTGCACTGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATAT<br>CCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGA<br>CATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACACCAGTT<br>AGAATGGCCATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTC<br>AACCATTGTGGAAGTCAGTGTGGAGATTCCTCAGTGATCTAGAAGTGGAAATACCATTTGACCCAGCCATCCCATTAATGGGTATATACCCAAAGGACTA<br>TAAATCACGCTGCTATAAAGACACATGCACACGCATGCTTATTACGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATA<br>GACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGAAGGGACATGGATGAAATTGG<br>AAATCATCATTCTCAGTAAACTATCGCAAAAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAG<br>GAAGGGGAATATCACACTCTGGGGACTTTTGTGGGGTGGGGGGAGGGGAGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGATGAGATAGTGGGT<br>GCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCGCATGTACCCTAAAACTTAAAGTATAATAA</font><font color="green"><u>AAAAAAGCAACTTA</u></font>at<br>aaaaattctctagagaataacatgatactttaaccagactattttagaagtgaaaataatgttgaattcattacttgactcccaaatggttattttcagg<br>gaatattggagtgatttccagatgtaaaagcttattcatatctaatgcttgtagaaactttattttgtataagtatgtcaaatttggtaatttattacac<br>tttttgatgaagtttatatattataccttgttgcaatgagtggatgaaggaacttttagaagtctaaactagaagatacaagagatgtaggcacattatt<br>acatcatatgggtgtgagaaataatgaatattacatactagaattcaccaaacatatatccaagctgattaagttaggacactt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr2	109911884	109912118	2000304	0	-	L1-2-17; RIP_L1_chr2_109_01	NA	NA	LINE	L1	L1PA2	gcaagactctgtcccataacaaaaacaaacaaaaaaacctctcatccacttttcctcaaagcaagtgagactatgctacaccaaaacaaagaaagtaaat<br>gaagaggacatgagatacaagaaacaaagggtctaactcagaaaaaagatgaagggaattctcaaactggtgataaagggaagtcccaagagcacagctg<br>tgtagcaaagaggaagaaaaaccaatccgggttggagaagttggttagtaagggtattccaggtagacagacaatcaatcaatcaatcagtgttttaagc<br>tgaaattgatgggattatctgaccagtttgaccacatttgagggtttaaattgctgagtttaagtaagcaagtagtaacacaacatacaa<font color="green"><u>GCAAACCAAA<br></u></font><font color="red">AAATAAAGCAATTATTCAGTCCAGGAAAACGTGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAAAGTATAATAAAAAAAAAACAACAAAAAACTGCACAACAAGGGCAATTCAAATGCAAAAATATTTACCTTCTATTTATATAAATGTTAACT<br>ATTCATTTAAACAAAAACTGCAGTAACAGTACTGAAAGAATGAGGG</font><font color="green"><u>GCAAACCAAA</u></font>gtgtctgaggacagttttggaggagcataatagccagtacagaa<br>tgtctaaaatggggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcggatcatgaggtcaggagatcgagactatcc<br>tggctaacacggtgaaaccccgtctctactaaaaatgctaaaaaattagccgagtgttgtggcgggtgcctgtagtcccagctacaggctggggcaggag<br>aatggcgtgaaccccggaggcagagtttgcagtgagccgagatcgcgacactgcactccagcctggacgatagagcgagactccgtctcaaaaaaaaaaa<br>gaaaagaaaagaaaagaaaatgtctaaaatgggag	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intron:RGPD5:NM:032260:2/20	
0	chr2	87987648	87988093	2000305	0	+	chr2-8804; RIP_L1_chr2_088_02	AAGCGGTATATTGTGCCTTGAT	AGCAGGAGTGATTCATCTGAT	LINE	L1	L1HS	ttatataataaaagtgctctttatagtaccttcctcataggaggtacctcttgattatttttaatgaatgcattagtacacctaaatcacctgcatatat<br>ttctgaaccctctaagcggtatattgtgccttgattttttaaaaacataataataacctgtaatcctagcactttgggaggcttaggcccagctattcag<br>gaggcttaggtgggaagagcacctgagcccagagaggttgaggctgcagtgagccatgattgcaccactgaactccggccttggtgacagagtgagacct<br>tgtctcaaaaaataaaaatacaagtataaaataatgatgcaatccctgccttctggtagcttacatttgataaattaagctg<font color="green"><u>AAAAGAATTGTGGGTATG<br></u></font><font color="red">CAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTA<br>GGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAA<br>TGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCT<br>AGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAA<br>TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAATTGTGGGTATG</u></font>aaataggaaacaagcagacaagttacatgagtcact<br>tagaacttgagttcttcttataatatgggttcaaattacctgttgccaggtttaaggtgaatcgtttaccatactgttttattttccatggtctaaactg<br>aaatgtatgcactaaggtcagagaaccaaatattagctttaattacacaatagatatattagagaatgccacagactttttactgttttcctacaagtct<br>aaaccttggcccctacatgtggggataattgggtctgcaatctagttgcttgcataatcctagcttgccttacagtgtagtgagagctccaggtaaagag<br>cacaagtgagcttcaacatttattcattttcccctcgcactgggga	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	63	1198	734	NA	intergenic	
0	chr3	83019349	83019647	2000306	0	+	chr3-8301; RIP_L1_chr3_083_02	AGGGGCCAGGTTACTTCCTA	GACAGGCATTGGATGATGTTC	LINE	L1	L1HS	gttgtgtgagcatgcataatcgaccatctaagtagaaatgctgaagtttgggactgaaaaggatggacagagaggggaggacatgaagaagggctgtcag<br>atttctgaaaatctacaggcgggaaataggcatacatggctattcggtcacaagcacatgttatccttccagaaaagaaaaggatgactccaaagatggt<br>tcagagtctggggtgggaggggttgctaatgcattcaaaggcctggagaatacagactcaaaggataggaccatatcttcctaaattccaaggggccagg<br>ttacttcctatggctgagtagccctagtgggcccagaacatgaggctaccacctggttgggcatggagaacagaacatcaggcccaagagggttgttc<font color="green"><u>TA<br></u></font><font color="red">GAACAAAAAACCAAACACCGCATATTCTCACGCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGT<br>GGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACA<br>TATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAGAAAAAAAAATAAA</font><font color="green"><u>T<br>A</u></font>aagtcttaatatctaaaagaatttgtcctgctaggttttagatttgcttgatgcccatgacccctttcttcctttcaatttctcccttttggaattgga<br>acatcatccaatgcctgtcttaagattgtatttttaagtagataatgtgtctggattcacagattttcagctggaaagaaatttagcttcaggatgaatc<br>atatcttgagtcttactcacaccttaaatagatgatatttaaatgagattattggatttagagttgatatagaatcagcaatgacttttcaggatgttga<br>aatagggtgaatccattttgcatgtgagaaggatgtatatattttaagggaaaagggagtggtgttgtgggttgcatggtgtttccctatgtttacttt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	63	529	228	NA	intergenic	
0	chr3	22067366	22072800	2000307	0	+	chr3-2206; RIP_L1_chr3_022_01;AC207303;AC222565	CCAGATGAACTCAGCAGTTTTT;NA;NA	ATCATCTTTGCCATGGTCTG;NA;NA	LINE	L1	L1HS	ctgggctttcctttgacaggaaatgtttcattattgatttaatttggttgttctttattggtctgttaagattttctatttcttcatgattcaattttgg<br>tagattgtatgtattgaacattgttttctaggttttaatttctgactaaatgtaacttttgatgaaatcattgaattgaccaaaggccacatatgtttta<br>ccagatgaactcagcagtttttaatgagttaatttctccgattttatctgattctgaaattatattaattcattgtgtattatgtatttgtttaaaaatt<br>gtatatttatattaaataaactaaacaatcaaaaataacgaatatctgttcctgactttcacaatctcttcacttttctgaccctta<font color="green"><u>AAAATTCAATGTG<br></u></font><font color="red">TTATAATTTCTGTTCTTTTACATTTGCTGAGGAGAGCTTTACTTCCAACTATGTGGTCAATTTTGGAATAGGTGTGGTGTGGTGCTGAAAAAAATGTATA<br>TTCTGTTGATTTGGGGTGGAGAGTTCTGTAGATGTCTATTAGGTCTGCTTGGTGCAGAGCTGAGTTCAATTCCTGGGTATCCTTGTTGACTTTCTGTCTC<br>GTTGATCTGTCTAATGTTGACAGTGGGGTGTTAAAGTCTCCCATTATTAATGTGTGGGAGTCTAAGTCTCTTTGTAGGTCACTGAGGACTTGCTTTATGA<br>ATCTGGGTGCTCCTGTATTGGGTGCATAAATATTTAGGATAGTTAGCTCCTCTTGTTGAATTGATCCCTTTACCATTATGTAATGGCCTTCTTTGTCTCT<br>TTTGATCTTTGTTGGTTTAAAGTCTGTTTTATCAGAGACTAGGATTGCAACCCCTGCCTTTTTTTGTTTTCCATTGGCTTGGTAGATCTTCCTCCATCCT<br>TTTATTTTGAGCCTATGTGTGTCTCTGCACGTGAGATGGGTTTCCTGAATACAGCACACTGATGGGTCTTGACTCTTTATCCAACTTGCCAGTCTGTGTC<br>TTTTAATTGCAGAATTTAGTCCATTTATATTTAAAGTTAATATTGTTATGTGTGAATTTGATCCTGTCATTATGATGTTAGCTGGTGATTTTGCTCATTA<br>GTTGATGCAGTTTCTTCCTAGTCTCGATGGTCTTTACATTTTGGCATGATTTTGCAGCGGCTGGTACCGGTTGTTCCTTTCCATGTTTAGCGCTTCCTTC<br>AGGAGCTCTTTTAGGGCAGGCCTGGTGGTGACAAAATCTCTCAACATTTGCTTGTCTATAAAGTATTTTATTTCTCCTTCACTTATGAAGCTTAGTTTGG<br>CTGGATATGAAATTCTGGGTTGAAAATTCTTTTCTTTAAGAATGTTGAATATTGGCCCCCACTCTCTTCTGGCTTGTAGGGTTTCTGCCGAGAGATCCGC<br>TGTTAGTCTGATGGGCTTTCCTTTGAGGGTAACCCGACCTTTCTCTCTGGCTGCCCTTAACATTTTTTCCTTCATTTCAACTTTGGTGAATCTGACAATT<br>ATGTGTCTTGGAGTTGCTCTTCTCGAGGAGTATCTTTGTGGCGTTCTCTGTATTTCCTGAATCTGAACGTTGGCCTGCCTTGCTAGATTGGGGAAGTTCT<br>CCTGGATAATCTCCTGCAGAGTGTTTTCCAACTTGGTTCCATTCTCCACATCACTTTCAGGTACACCAATCAGACGTAGATTTGGTCTTTTCACATAGTC<br>CCATATTTCTTGGAGGCTTTGCTCATTTCTTTTTATTCTTTTTTCTCTAAACTTCCCTTCTCGCTTCATTTCATTCATTTCATCTTCCATTGCTGATACC<br>CTTTCTTCCAGTTGATCGCATCGGCTCCTGAGGCTTCTGCATTCTTCACGTAGTTCTCGAGCCTTGGTTTTCAGCTCCATCAGCTCCTTTAAGCACTTCT<br>CTGTATTGGTTATTCTAGTTATACATTCTTCTAAATTTTTTTCAAAGTTTTCAACTTCTTTGCCTTTGGTTTGAATGTCCTCCCGTAGCTCAGAGTAATT<br>TGATCGTCTGAAGCCTTCTTCTCTCAGCTCATCAAAATCATTCTCCATCCAGCTTTGTTCTGTTGCTGGTGAGGAACTGCGTTCCTTTGGAGGAGGAGAG<br>GCACTCTGCGTTTTAGAGTTTCCAGTTTTTCTGTTCTGTTTTTTCCCCATCTTTGTGGTTTTATCTACTTTTGGTCTTTGATGATGGTGATGTACAGATG<br>GGTTTTCGGTGTAGATGTCCTTTCTGGTTGTTAGTTTTCCTTCTAACAGACAGGACCCTCAGCTGCAGGTCTGTTGGAATACCCTGCCGTGTGAGGTGTC<br>AGTGTGCCCCTGCTGGGGGGTGCCTCCCAGTTAGGCTGCTCGGGGGTCAGGAGTCAGGGACCCACTTGAGGAGGCAGTCTGCCCGTTCTCAGATCTCCAG<br>CTGCGTGCTGGGAGAACCACTGCTCTCTTCAAAGCTGTCAGACAGGGACACTTAAGTCTGCAGAGGTTACTGCTGTCTTTTTGTTTGTCTGTGCCCTGCC<br>CCCAGAGGTGGAGCCTACAGAGGCAGTCAGGCCTCCTTGAGCTGTGGTGGGCTCCACCCAGTTCGAGCTTCCCGGCTGCTTTGTTTACCTAAGCAAGCCT<br>GGGCAATGGCGGGCGCCCCTCCCCCAGCCTCGTTGCCGCCTTGCAGTTTGATCTCAGACTGCTGTGCTAGCAATCAGCGAGATTCCGTGGGCGTAGGACC<br>CTCCGAGCCAGGTGTGGGATATAGTCTCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAAT<br>CAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCG<br>CTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTA<br>CCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCA<br>GGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTC<br>ACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTT<br>ATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCT<br>CAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATA<br>CGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAAC<br>AACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACT<br>GAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCC<br>AGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAA<br>ACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATA<br>CACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGAT<br>GTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAA<br>TCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAAC<br>TACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAA<br>CTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGC<br>ATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCAT<br>ATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACC<br>CTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACA<br>AATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTA<br>CTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATG<br>AACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTA<br>TGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTG<br>TTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTA<br>CTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACC<br>AACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTT<br>TGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGA<br>ACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAA<br>TGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGT<br>ATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTCAATGTG</u></font>atacagatacctagagagtacagtaagaatgggataaaatataaaccgtgtg<br>ttagtttaggggctgtctattacagaccatggcaaagatgataagctaaaattccatcaaggatcatttaggtgggaatgtcaccaggtgaaagataccc<br>aagataaaactgtagtgagtattaggatccatgacccgttatagggtgtacatcttcctaaagccattccaattaaacagaaaagaaagtttaaaaatgg<br>ttctgaccaaaaaacaaaacaataaaacaaaaagaactctacaaatcaaattcagctggtgcagtttgacagttttaattcaaaactattgttcagtgta<br>catcagctattgccataataatgctgtgtaacaat	UCSC;UCSC;UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR;E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA;NA	60;NA;NA	5742;NA;NA	294;NA;NA	NA;NA;NA	intergenic;intergenic;intergenic	
0	chr4	152560173	152561002	2000308	0	-	chr4-1526; RIP_L1_chr4_152_01	GCTTGGAAGAATGCACATCA	TCGGTGCTCTGTGCAAATC	LINE	L1	L1HS	taggttgatcttagtgctttaaaaatatcagtaatcactcactggcaacctactaagcaaaagaaaagcaacactaggaacagtggagggatgtggaaat<br>acagagttaggctccagtcctaaaggagtttataatctaattgggaagaaggacaaatgtataaaagataacactggatggcagcaaatgactaaattcc<br>taaaatttcagtatggagattcaggtgccaggaaactactacaggaaaagacagccaagaaagattttatggaggacacagctctgaactaggcttggaa<br>gaatgcacatcactaaaataactggaaagaggaaggactggtctcaacaaagatggggaaaaaggaagaggtagggtgtgttc<font color="green"><u>AAGAATGAGGAACAGAC<br></u></font><font color="red">ACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATA<br>TCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGG<br>GACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTA<br>TATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAA<br>ATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGG<br>ACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGA<br>GATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGA<br>TGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAGCCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGAGGAACAGAC</u></font>cagcatggcagtcaaagcaaaggatttgcacagagcaccagatcataaatgcc<br>ctgagaatcagccaatggttctccagagaaacagaaccagtaggagatgtatgtgtgtgtttataaagagacttattataaggaagtggcttacgcaatt<br>atagaggccaagaagtctcaagatctgcagtcagcaagctggagacccaagagagacaataacataagttatagtttgagtctgaatctgaaggcaggag<br>aagaccaatgtcccaggttgaaaacagtcaaacagagagagagagaggagagtgaattctcccttactcagtctttttgtactactgaagccttcaatag<br>actgaataagacccatccacactggggagg	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	62	997	150	NA	intron:FAM160A1:NM:001109977:1/14	
0	chr4	139688304	139692672	2000309	0	+	chr4-1398; RIP_L1_chr4_139_01	ATAGGCGTGGGCAAAGG	CTAATTTTCATTCCCACCAATG	LINE	L1	L1HS	catataaaacaagggaacagaacagagacctcagaaataacaccacacatctacgacatctgatcttcaacaaacatgacaaaaacaagcaatggggaaa<br>ggctctcctgttaaataaatgatgctgggaaaactggctagccatatgcagaaaattgaaactggaaccttgccttacaccttatgcaaaaattaactct<br>agatggattaaagtcttaaatgtaaaacccaaaaccacaaacaccctagaagaaaccctaggcaataccattcagtacataggcgtgggcaaaggcttca<br>taacggaaatgccaaaagcaattgcaacaaaatccaaaattgacaaatggcatctaattaaactaaagagcttttgcacagc<font color="green"><u>AAAAAAAAAAAAAAAAAA<br></u></font><font color="red">TTATCATCAGAGTGAACAGGCAACCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTG<br>AAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGA<br>AAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCT<br>AACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGA<br>TAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCA<br>AGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTAC<br>ATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTG<br>ACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACAACCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGA<br>TACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCA<br>CACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACA<br>GTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAA<br>CGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGG<br>AAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACAC<br>ATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAG<br>CTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAA<br>GGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATA<br>CATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAG<br>TTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAA<br>TCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGAAGAGACACAACCAAAAAAGAGAATTTTA<br>GACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGT<br>GGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATC<br>TCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAA<br>GAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTC<br>ACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTG<br>TCCCTGTTTGCAGATGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGAT<br>ACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAA<br>GAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAAC<br>AAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCA<br>AGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAA<br>GAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGAT<br>CAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCC<br>TATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGAT<br>TAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAA<br>ACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACA<br>GGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAA<br>AACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCA<br>TCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCT<br>GGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCT<br>AGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTT<br>ATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAAT<br>ACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAAC<br>CAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGG<br>GGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAA<br>CCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAGA</font><font color="green"><u>AAAAAAAAAAAAAAAAAA</u></font>gagtgaacaggca<br>acctacagaatgggagaaaatgtttgcaatctacccatctgacaaaggtctaatatccagaatttacaaggaacttaaacaaatttacaagaaaaaagca<br>aacaaccccatcaaaaagttggtaaaggatatgaacagacacttctcaaaagaagacatttacatggccaacaaacatatgaaaaaagttcaacatcact<br>gatcattagagaaatgcaaatcaaaaccaaagtgagataccatctcacgccagttaaaatggcgattattaaaaagtcaagaaacaatagatgctggaga<br>ggctgtggagaaacaggaacacttttacacattggtgggaatgaaaattagttcaaccattgtgaaaga	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	62	4873	495	NA	intergenic	
0	chr4	125163018	125164636	2000310	0	-	chr4-1253; RIP_L1_chr4_125_01	TCAGTGATCTGCCCATCTTG	TTTGGCACATCCTGAACATT	LINE	L1	L1HS	gaaaatacattcagattatagcactagtctgtaagtagataagtagatggtgcacaataaataataactttttttcaagatggaatctctctctgtctcc<br>caggttggaatgcagtggcatgatactgtaacatccgcctcccaggttcaagcagttctcctgcctcagcctcctgagtagctgaaattacaggcacctg<br>ccaccatgcccagctaacttttttgtatttttagtagagatggggtttcacatgttggccaggctggtcttgaacccccaaccttcagtgatctgcccat<br>cttggcctcctaaaatgttgggattacagacatgaaccactgcacctggcccacaataaataattgttaaattgaaattctaatc<font color="green"><u>ATAAAGTATGTAATG<br></u></font><font color="red">GCCAGTGATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATTTCCTTCGCCCACTTTTTGATGGGGT<br>TGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGT<br>AGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGGCTTTTGTTGCCATTGCT<br>TTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTA<br>AATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGCGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTT<br>ATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGTGGCATTATTTCTGAGGGCTCTGTTCTG<br>TTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAG<br>CTTTGTTCTTTTGGCTTAGGATTGACTTGGCGATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCAT<br>TGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCT<br>CACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGT<br>AAACTAGTTCAACCCTTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACC<br>CAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCC<br>AACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGG<br>ATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCAC<br>TTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACAT<br>GTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACACTAAAACTTAGAGTATAATAAAAAAAA<br>TAATAATAATAAAAAAAAA</font><font color="green"><u>ATAAAGTATGTAATG</u></font>caaagatatcttacgcagtattaaagtatatgcagaagtcattgatcttcttcaaaataaagaata<br>aagtaacttttattgaatgttcaggatgtgccaaacatattctaaggattctgcaaacattaagtctttagataatgctgtgagataaggaaacacttta<br>cggatgaaaaaactgaggcttggagagattaatataattgccccagattacacctagtaaggagtctatattaattacttgtagctgctgtaataaagta<br>acacaaacttggtggattacaaaaacagaaatttattttctttaattattggaggcccagagtctgaaaacactatcgctgtgccaaaatcaaggggtga<br>cagggccgccctgtctcca	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	62	1851	217	NA	intergenic	
0	chr4	103006802	103007375	2000311	0	+	chr4-1031; RIP_L1_chr4_103_01	TCGAACTGTAGAAAACTGAAAACAA	GAATTTTAGATTGGTGGGTTCC	LINE	L1	L1HS	ataggtttactagtagagttgacaaaggtcagaaaagaatcattgaatttgaagacaggtcaatgaaaacttcccaaacttaaatggtaaagagaaaaaa<br>gtttttttgtctgtttgttttttaaagaaaggacaaaacatctaagaaatgtgggatgatttcagaaggtctaacatacatgtaattggaatacaagaag<br>aatgacaaaatgaagcacaataaatattcgcatattaatgacagatcaaaatacagatataggaagctcaagtaacatgaagaaagataaatataaaata<br>ttgacacctattcatattacattcgaactgtagaaaactgaaaacaaaagagaaaatcttgtcagaagccagagaaaacgaataccttacctgtag<font color="green"><u>AGAA<br></u></font><font color="red">ATGAGTATAGGAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGT<br>TTATTGCAGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGA<br>ATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAA<br>ACCAAACGCCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTC<br>GGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACT<br>AACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAATTTAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAA</u></font>ttacgttgaatttctcttcaga<br>aaccacacaagcaagaaaatagtggagtaaaatattttaagtattgtgaaaaaaaggaacccaccaatctaaaattctatattcagtgaaattatcctta<br>atatagaatgaagtagaaataaggattttttcaaacagaaaaatgaaggagttcattaccagcagacctgccctgcaagaaattttaaaagaagttcttt<br>gggaaagaagggaaataatgtaggtcagaaacttagatctacgtaaagaaagagcatagagaataaatgaatgaaggtaaaaacacaatatttcattttc<br>cttatttttaattgatctaaaagataaatgtgtgtctgaagtaaacactgtcaatgtgttgggtgattacagca	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	60	755	190	NA	intron:BANK1:NM:001083907:4/17	
0	chr4	70274429	70274842	2000312	0	+	L1-4-25; RIP_L1_chr4_070_01	NA	NA	LINE	L1	L1PA4	agcaaacttagatccagacccttgacagtttactgtgatttctagtgaggacagctgccctcaactttttagtatccattcttgaactcttctggtatta<br>tagattgagaaattcccttggtcacctatctgttttgtccctagtgctatcttctctattactatgtacacagctttctaaattaggtctttctggataa<br>caccccagtcttagtactcatgtgtattatgactatctcccttctgaaggtctctattatttcaatatctgatcataaatcgtatcagtgagattggttt<br>ggtgagtcaaaaaagacctatcaaaggatagacatgttgaacattcattacaactagcaaatatttgatagatttccagcactgtat<font color="green"><u>AAGATGTCTATGT<br></u></font><font color="red">CCAACAACGATAGACTGGATTAAGAAAATGTAGCACATATACACCATGGAATACTATGCAGCCACAAAAAATGATGAGTTCATGTCCTTTGTGGGGACAT<br>GGATGAAATTGGAAACTGTCATTCTCAGCAAACTATCGCAAGGAATGTAAACCAAACACCACATGTTCTCACTCATAGGTGGGAATTGAACAATGAAAAC<br>ACATGGACACAGGAAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGAGGGGGGAGAGATAACATTAGGAGATATACCTAATGCTAAATGACG<br>AGTTAATAGGTGCAGCACACCAACATGGCACATGTATACATATGTAACAAATCTGCACTTTGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATA<br>AAATTTAAAAAAAA</font><font color="green"><u>AAGATGTCTATGT</u></font>taatatatccactatcataagccttctgattccctctttcattcactggcaaggccattccagcacacaagtt<br>tcattttgtagtagccacagtttttcccaagattatgaaggtatcttagtagtagtctgttaccactaccttctgaagtttgagcacaactattaaattc<br>tatttcctttgagagtgcctcaaaacaaaaaaggaaagtgttgttgaactttttgaaagtgtttgctgcatctattgaaatgatcatgatgtatttcttt<br>ttagtcctaggtatgtgatgaatcacatttatttatttgcatatgtttaacgaatcttgcatcctaagattaatgcctacttgattgtgctggttagatt<br>ttgatgtgctgctg	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr4	81107087	81113116	2000313	0	+	chr4-8124; RIP_L1_chr4_081_02;AC208817	TAAATGGCCTGTGATTGCTG;NA	GTTTCACCATCTCTAGAGTGC;NA	LINE	L1	L1HS	ttcctgatactcttcctgcctctgcgtcattattttctgaataggtaaattactgtaagttccccaaatgaaagatactctaaagcaaaaaagaactgaa<br>atttaagaaatattatgtgctctttctataaaatagaaataaaatttgtaggatattagagtctcaatacagattatatcactgccccatgcaaatatga<br>ttttatttaaacaaataatgaaatattactttttggataatactatttttatgtttacattattttagagacttaaaaaaatcactgaaatatttaccat<br>gattaaatggcctgtgattgctgcacattctttttggcacaagttgcctttgtcaatcaagatatttactgtgctggcgactata<font color="green"><u>AGAATAGGGCGTCCG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCAGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGAATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTTACGGATGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTATGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTG<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATA<br>CAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGAC<br>TAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGA<br>TGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAAC<br>TCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAA<br>AAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTT<br>CAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAA<br>ATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATA<br>TCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGT<br>TCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTAT<br>CTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCAT<br>TCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTAC<br>AAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTA<br>GGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGG<br>AAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGA<br>CTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATA<br>ATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGC<br>TAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACTTTATACAAAAATTAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCAT<br>AAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAA<br>ATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCG<br>CAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAA<br>GGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGTCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAA<br>ACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTT<br>TACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCAT<br>TCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACT<br>TGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCA<br>TATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGG<br>GAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATA<br>TACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAAC<br>TTAGAGTATAATAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAATAGGGCGTCCG</u></font>aaggcttcatttgttcacaagaagccaactgaaaattaacatataaaaatgtata<br>aactagtataagaaattgtcaaaacaaagtgaaagcatagtggaaataaatgcatttaagaagaaacaaagataaaagaagaaggaaggaaggaaaagag<br>ggagggaaagaggaaggtggggaggaagggaagtaagatagcactctagagatggtgaaaccaaaatagtatggtttcctaatacatactgtaaacttat<br>aaaaaatgttggggcccttcaattatcctaataatgtacagaaagctatttcactaaagtagtggaagaattcttgctgtgtatttttatgattaaatct<br>ctggaaaaatgtaggttcaggtttatatgt	UCSC;UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	62;NA	6358;NA	313;NA	NA;NA	intron:ANTXR2:NM:058172:16/17;intron:ANTXR2:NM:058172:16/17	
0	chr4	120519645	120520121	2000314	0	-	L1-4-27; RIP_L1_chr4_120_01	NA	NA	LINE	L1	L1PA2	tactctaccataaaaaaagaaagaaataatgtcttttgcagcaacttggatgaaactggaggccattattctaagttaagtaactaaggaatggaaaacc<br>aaatactacatgttcacacttataagtgggagctaagctatcagtatgcaaaggcagacagagtggtataatggacatgggagactcagaagtggggagg<br>ttgagaggatggtgatggatgaaaaactaccgattagagtacaatgtctactactcaagtgacgggtacattaaaatcccagacctcgtgactatacaag<br>tcatccatgtaaccaaaaaccacttgtactcctaaagctattagaataaaaaaaaggatgtaatcattcaatgaaagcataaagaaactaaa<font color="green"><u>AAAAGAAA<br></u></font><font color="red">AGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACA<br>CCATGGAATACTATGAAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAAGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCGCAAGA<br>ACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGG<br>TGGGGTGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATA<br>TGTAACTAACCTGCATGTTGTGCACATGTACCCTAAAACATAAAGTATAATTTAAAAATAAATAAATAAATAAAAAT</font><font color="green"><u>AAAAGAAA</u></font>tttcctaataatcac<br>tttcaatatatatttttaattgtttataaactcaaataaaatatagattacatttgtgaactatgtgtgtgcattcaaagctataacaatctcccctccc<br>caactgcagagatgaggggcctgaagggcctgaacagcagctaaagcaagggctccttgaaaacagcaacaggccctccctctgccacagggagatgcca<br>gcagtagcagtaggccatggaaccagcatgcaaggagtgggctgcttctattggtggtctacttttctactccaccaaacatatctatatttcactgctt<br>tgaagatttttttaagccacaaaattgttttcatagatgcaaaaaaaaaaaagaataaaaaatcagagctaaaataa	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr4	190295009	190301266	2000315	0	+	chr4-1904; RIP_L1_chr4_190_01;AC207775	TAAGATGGCTCTTGCCCTTC;NA	GGCAACGTAATGCATGTGAT;NA	LINE	L1	L1HS	ggagaaacaaatttaagtggacattggtacatggatgaaggaatacaatattacagttcagtcactttaaaaattactgtttgatatggcttggctgtgt<br>ccccacccaaatctcatcttgaactgtagcttccataattcccacgtgttgtgggtgggccccagtgggaggcaattgaatcatgggagcagtttcccgc<br>acactattctcctggtagtgaataagtctcatgagatctgatggttgtataaggggaaatcctttggcttggttctcattctcttcttgcctgccgccat<br>gtaagatggctcttgcccttccaccatgattgtgaggcctccccagccacgtggaaccatgagtccattaaacttctttccttt<font color="green"><u>ATAAATTACCCAGTCT<br></u></font><font color="red">AGCAATCAGCGAGACTCCGTGGGCGTAGGACCCTCCGAGCCAGTTCTTAAGATCTGCTATGAAAAATAGATAAGGATTTTGAAGTTATCCATGGACTTTT<br>GGAGTATTGTTAATAAGAAGTCCAGAATCATCATGACTTTCAGTCTTTGATATGTGACTTGTTCTTTCTAGAACCTTATGGGAAGAGTCATGCTCCCTTT<br>TCACTTCAAAGTGAGTGGACAGAGTGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAGGACGGGTGATTT<br>CTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGG<br>CGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCC<br>ACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCT<br>GATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAG<br>CCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGA<br>GCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGC<br>CTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAA<br>CAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGAC<br>CAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTC<br>CTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATT<br>CAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGC<br>TGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGTAATGGAAGATGAAATGAA<br>TGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGT<br>CTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGG<br>CCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAAT<br>GAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAA<br>GCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAG<br>AAATAAAATATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACC<br>GGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCAAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAAT<br>GACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAA<br>GACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAA<br>AACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAA<br>GGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGGGACCTACAAAGA<br>GACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACTCAGGAAT<br>TGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTA<br>TTCCAAAGTTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAA<br>CTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGG<br>CAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGC<br>ACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACACTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCT<br>AGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTG<br>AAAGGATCAACAAAATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCAC<br>CACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGAC<br>ACATACACTCTCCCAACACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCA<br>AAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCGGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAA<br>AGAGGGAATCCTCCCTAACTCATTTTATGAGGCCATCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTCAGACCAATATCC<br>TTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCC<br>CTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGC<br>AGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTAT<br>GACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTAT<br>TCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGC<br>AGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAAT<br>GTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATCGCTTCAAAGAGAATAAAAT<br>ACCTAGGAATCCAGCTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAA<br>CATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATG<br>ACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTG<br>GAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAG<br>AACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAA<br>TGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGATGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAA<br>ACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTGAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGC<br>AATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACA<br>ACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACC<br>CCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCAT<br>CAGAGAAATGTAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGT<br>GGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCCAGAACTAGAAA<br>TACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACATGTATGTTTATTGCGGCACT<br>ATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCC<br>ATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCA<br>TATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGA<br>GGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATG<br>TGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAATTAAAAAAAAAAAA</font><font color="green"><u>ATAAATTACCCAGTCT</u></font>taggtatgtctttattagcagcatga<br>gaacagactaacacactgttttttaatgttttattacattgaactttcattcattgaatctatgattttcttcacttttatgcccataatattgagttta<br>taaattttaatgattttttttacacctgatatttagcctgcctaggcatagtgaacacacatcctggttcgcctgggaaagtccttgtttactagatgaa<br>tcacatgcattacgttgccaccctgttcaaagatatctcagcttggattcattccatcttaccctgaggcagaacctgagacaagggtttgctggtgtgt<br>agtttattgtgggaaataaaccacaggggcaagtgatggtgaaataggaagagtgaaa	UCSC;UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	62;NA	6618;NA	344;NA	NA;NA	intergenic;intergenic	
0	chr5	69891520	69891580	2000316	0	-	L1-5-29; RIP_L1_chr5_069_01	NA	NA	LINE	L1	L1PA3	atctataaattaccttgggcagcaaagacttggaaccaatccaaatgtccaacagtgatagactggattaagaaaatgtggcacatatacaccatgcaat<br>actatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaattggaaatcatcattctcagtaaactatcgcaaggacaaaaaac<br>caaacaccggatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacaccacacgctggggactgttgtggggtggg<br>ggaaggggggagggaaagcattaggagatatatctaatgctaaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaact<font color="green"><u>AA<br></u></font><font color="red">CCTGCACATTGTGCACATGTACCCTAAAACTTGAAATATAATAATAATAAAATTTAAAAAA</font><font color="green"><u>AA</u></font>atgttcatttttaattatagcactacaccatgcactg<br>aatcacggagggtaaaaatgcacactgttaataagaaggagggagtcaatctcattagtattataatatttatactgaatgagactccattcccgaaatt<br>cacagaattaaaataataaaaataaaaatttattgctagccaatttgcagcaaaaaagattcattctcatattctgctatgagaaaataaatgaaattga<br>attttaaaagacatttttggaaagccctttgaattaaccagaaaattgttaaattcgtagtttttttgactaacattcttcttccacgttaacagaattt<br>atatataagtgacactcattgcatatacttttaaggggtaaaataattactaaatttatgt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr5	69015446	69015505	2000317	0	-	L1-5-33;L1-5-30; RIP_L1_chr5_069_02	NA;NA	NA;NA	LINE	L1	L1PA3	attgcggcactattcacaatagcaaagacttggaaccgacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatgcaccatggaat<br>actgtgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaattggaaatcatcattctcagtaaactatcgcaaggacaaaaacc<br>ctaagaccgcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacaccacacgctggggactgttgtggggtggg<br>ggaaggggggagggaaagcattaggagatatatctaatgctaaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaact<font color="green"><u>AA<br></u></font><font color="red">CCTGCACATTGTGCACATGTACCCTAAAACTTGAAATATAATAATAATAAAATTTAAAAA</font><font color="green"><u>AA</u></font>atgttcatttttaattatagcactacaccatgcactga<br>atcacggagggtaaaaatgcacactgttaataagaaggagggagtcaatctcattagtattataatatttatactgaatgagactccattcccgaaattc<br>acagaattaaaataataaaaataaaaatttattgctagccaatttgcagcaaaaaagattcattctcatattctgctatgagaaaataaatgaaattgaa<br>ttttaaaagacatttttggaaagccctttgaattaaccagaaaattgttaaattcgtagtttttttgactaacattcttcttccacgttaacagaattta<br>tatataagtgacactcattgcatatacttttaaggggtaaaataattactaaatttatgt	UCSC;UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:LOC653188:NR:027386:1/6	
0	chr5	69202121	69202181	2000318	0	+	L1-5-32;L1-5-34; RIP_L1_chr5_069_03	NA;NA	NA;NA	LINE	L1	L1PA3	atctataaattaccttgggcagcaaagacttggaaccaatccaaatgtccaacagtgatagactggattaagaaaatgtggcacatatacaccatgcaat<br>actatgcggccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaattggaaatcatcattctcagtaaactatcgcaaggacaaaaaac<br>caaacaccggatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacaccacacgctggggactgttgtggggtggg<br>ggaaggggggagggaaagcattaggagatatatctaatgctaaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaact<font color="green"><u>AA<br></u></font><font color="red">CCTGCACATTGTGCACATGTACCCTAAAACTTGAAATATAATAATAATAAAATTTAAAAAA</font><font color="green"><u>AA</u></font>atgttcatttttaattatagcactacaccatgcactg<br>aatcacggagggtaaaaatgcacactgttaataagaaggagggagtcaatctcattagtattataatatttatactgaatgagactccattcccgaaatt<br>cacagaattaaaataataaaaataaaaatttattgctagccaatttgcagcaaaaaagattcattctcatattctgctatgagaaaataaatgaaattga<br>attttaaaagacatttttggaaagccctttgaattaaccagaaaattgttaaattcgtagtttttttgactaacattcttcttccacgttaacagaattt<br>atatataagtgacactcattgcatatacttttaaggggtaaaataattactaaatttatgt	UCSC;UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr5	69595184	69595244	2000319	0	-	L1-5-31; RIP_L1_chr5_069_04	NA	NA	LINE	L1	L1PA3	attgcggcactattcacaatagcaaagacttggaaccaacccaaatatccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaat<br>actgtgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaattggaaatcatcattctcagtaaactatcacaaggacaaaaacc<br>ctaagatcgcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacaccacacgctggggactgttgtggggtggg<br>ggaaggggggagggaaagcattaggagatatatctaatgctaaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaact<font color="green"><u>AA<br></u></font><font color="red">CCTGCACATTGTGCACATGTACCCTAAAACTTGAAATATAATAATAATAAAATTTTAAAAA</font><font color="green"><u>AA</u></font>atgttcatttttaattatagcactacaccatgcactg<br>aatcacggagggtaaaaatgcacactgttaataagaaggagggagtcaatctcattagtattataatatttatactgaatgagactccattcccgaaatt<br>cacagaattaaaataataaaaataaaaatttattgctagccaatttgcagcaaaaaagattcattctcatattctgctatgagaaaataaatgaaattga<br>attttaaaagacatttttggaaagccctttgaattaaccagaaaattgttaaattcgtagtttttttgactaacattcttcttccacgttaacagaattt<br>atatataagtgacactcattgcatatacttttaaggggtaaaataattactaaatttatgt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr5	103882188	103888225	2000320	0	+	chr5-1038; RIP_L1_chr5_103_01;AC210770;AC196527	TTTGTTTTCCAAATGTGTGGTT;NA;NA	AGGAAATGGTGCCACATAGG;NA;NA	LINE	L1	L1HS	aatatatataatatatatgcagtttgggtactattgctatgtatcccttgatgaacagaagttttaaatttaatatatagtaaaagttacaaataatata<br>ttttacattatagtctctgtcatgtattcaaaattcttctctacctcaaggtctaaacaattttcaaacatatattctaccaaagtagtcaaatttgttt<br>tacttatttgtcattaatctttctagatttgagttttgccaattatctaaagaatccaattttgttttccaaatgtgtggttattttttctaactatatt<br>tacttaatatgatttaaaatccacactgattggcaagaagaattatgttgctttctccaaggtcaaacaagttgcaagtccccttt<font color="green"><u>AATAAAATTATTAA<br></u></font><font color="red">GGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCATGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAGTAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTCATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTGG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAACCCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTGAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAATAATAATAA</font><font color="green"><u>AATAAAATTATTAA</u></font>atatacttaacttttaaagccccataccggagatgttattacatattt<br>agtaatgtttatctattcaaggaggattgtcaattttataattataatactctctttgatattctaacaataatataaaacctgactaaggttaaagcag<br>tatctaattgatctttagcctatacttttcagtacatgaaagtctcacatttacatttcctatgtggcaccatttccttagaaggatgtccagtggttaa<br>taacacagctatctgagtcatggtttaatatttacaacaatattataaatcattctgccttaaaatacttctatttaaaaatttttaaaagaactgatta<br>tatgaaaaacttttccaaaaagtgcactatttggttaa	UCSC;UCSC;UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR;E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA;NA	56;NA;NA	6418;NA;NA	366;NA;NA	NA;NA;NA	intergenic;intergenic;intergenic	
0	chr6	20060986	20061101	2000321	0	-	chr6-2006; RIP_L1_chr6_020_01	GGAAAACATCCACAGTTCAACTG	CTTTCTCGTGTTGAGGTACAG	LINE	L1	L1HS	catcagatttagaaaggacaagaaaaggaacaataaaaaaaaaatcctaccaagattcactgtatgagcagaacagagagacaaatagttcttaaaggca<br>attagaaagaaaagggaaaacatccacagttcaactgtaggtaaagacttgaaaactgctgaattctaccaaatatttaaaaaagaactaataccacttc<br>tcaaactaatttcagaaaatttaagaggaatactttcaaactcatcttataaggccaacattattcagattccaaaactgggaaagaacacaataagaaa<br>agaaaactacaggccaatatccctgaggaaactagatgcaaaaattctcaaccagatactagcaaactgaatccaacagtacat<font color="green"><u>TAAAAAGATCATTCAC<br></u></font><font color="red">ATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAATA<br>AATAAATAAATAAAAA</font><font color="green"><u>TAAAAAGATCATTCAC</u></font>tatgatcaagtgagattcatctcagggatgcaagcatgatttaacaaaaaccaaatgattatttcaat<br>agacacagaaaaagcatttgacaaaattcaacatccttcatgatgaaaactctcaagaaattaggaacagaagttctgtacctcaacacgagaaaggcca<br>tatatggaaaactcatagctaacattatattgaacaggaacaagacaagtatgaccatttttaccacttttattcaatgtagtattgtaagtcctagcca<br>gagcaattagccaaggtacagaaataaaagacacccaaattggaaaagagagagtcagatcgtccctgtttgtatatggcataattgtatatagagagaa<br>ccccaaagacatcacc	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	62	582	451	NA	intergenic	
0	chr6	57586120	57586814	2000322	0	+	chr6-5758; RIP_L1_chr6_057_02	AATGAATACCATGATATGCCAAA	TGCCTACACTATAAACACTTAGGAACA	LINE	L1	L1PA2	ttttgctctgtaaaagacagctttaagagaacaagataagccacagactggaagaaaatatttgcaaatcataaatttcataaaagatgtgaatccaaaa<br>gatataaagaactctcaaaactcagtaattagaaaacagttttttaaacgggcaaaacatttgagtagacagttcaccaaagaaaaagtgtgaatggtaa<br>atataagcacatgaaaaaatatagctcattagtgaaatgaaatttaaaactacaatgaataccatgatatgccaaatagaattggtctaatttaaaaaaa<br>tctagcaatactaagtgctagtgaggatgcagagtgactgaaggtctcatacaatagtggaggaaatgcaagtcatagagtcactttg<font color="green"><u>AAAAGGAGTGTG<br></u></font><font color="red">AATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAA<br>CCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATA<br>AATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGA<br>CTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAA<br>ACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGA<br>AGGGGAACATCACACTCTGGGGACTGTGGTGGGGAGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGATGAGTTAGTGGGTGC<br>AGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATTTAAAAAAAAAAAAA</font><font color="green"><u>AAAAG<br>GAGTGTG</u></font>gcaatttcttataaagtgaagcttacacatgctatgtgacacagtgatacctgtaactagtatttatagaattgaaataaaagcataagtcca<br>cataaaaatctgttcctaagtgtttatagtgtaggcattattcataattgccaaaaactagaaacaacccagatgttcttcagtgtgtgattggataaac<br>aaattgtggtatagtcatacaatggaatattacctgacaatagaaaggaataaattactggtatacccattaaaatgtaaggttctcaaatacattatac<br>caagtgaaagaagtcagactcaaaagcactatagtgtataattctatttgtatgataaatctgtaggtacagagtgattgctgggagcaggagag	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	62	984	277	NA	intron:PRIM2:NM:000947:12/15	
0	chr6	86765473	86771510	2000323	0	-	chr6-8676; RIP_L1_chr6_086_01	ACACATATGTTTATTGTGGCAC	AGCCACTAGTCTCTTGTGCT	LINE	L1	L1HS	catatgaaaaaatgctcattgtcactggccatcagagaaatgcaaatcaaaaccacaataagataccacttcagttagaatggtgatcattaaaaagtca<br>ggaaacaacaggtgctggagaggatgtggagaaacaggaacacttttacactgttggtgagactgtaaactagttcaaccattgtgggagacagtgtggc<br>aattcctcgaggatctagaactagaaataccatttgacccagccattccattactgggtatatacccaaaggattataaatcatgctgctgtaaagacac<br>atgcacacatatgtttattgtggcactattcacaatagcaaagacttggaaccaaccaaaatgtccatcagtgatagactggatta<font color="green"><u>AGAAAATGTGGCAC<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGAGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCATGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCACCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTCTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACTCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGT<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACG<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGAATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTT<br>ACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTCCATGCTCATGGG<br>TAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATT<br>GGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCT<br>GACTTCAAACTATTCTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAA<br>TAATGCCGCATGTCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTG<br>GCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACC<br>ATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACA<br>AAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTT<br>TGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCG<br>AAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCA<br>AAACCACTATGAGATATCATCTCACACCATTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACT<br>TTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCC<br>ATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGA<br>CTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTT<br>CATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGT<br>GGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGA<br>TATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAA<br>ACTTAGAGTATAATAAAAAAAAAAAAAAGAAAAAAAAA</font><font color="green"><u>AGAAAATGTGGCAC</u></font>atatacaccgtggaatactatgcagccataaaaaaggatgagttcatg<br>tcctttgtagggacatggatgaaattagaaaccatcattctgagcaaactatcgcaaggatagaaaaccaaacactgcatgttctcactcacaggtggga<br>actgaacaatgaaaacacttggacacaggatgaggatcatcacatactggggcctgacatggggttgggggagggagcagggatagcattaggagattta<br>cctaatgtaaattgccagttaatgggtgcagcacaccaacatggcagatgtatacatatgcaacaaacctgcatgctgtacacatgtaccctagaactta<br>aagcataataataaaaataaataaataaatagcacaag	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	62	6546	494	NA	intergenic	
0	chr7	61410781	61411160	2000324	0	-	L1-7-39; RIP_L1_chr7_061_01	NA	NA	LINE	L1	L1PA2	atgttttgcaatatttctccatttattatgctttaaattagttgaatcatgcccctataatgtgtacattttaacctttgactataggtctcaatcttac<br>tttggatcctgcatttcaatttatgctaataaagtcctacagctaaaaaagatcatataaacttatctacacttttactagtattctggtgtcattttaa<br>attatgtaatgaaatcaaattttaatttggattattgttatctgagttaaggatctaaatttttaattttcctataaatattacataattatttctgaac<br>catatattgtctaatctgccctttatatgatgtgcattataagagcttgggattgtttcatttgcaaagatgaatgcttgagaagtagatattt<font color="green"><u>AATCAT<br></u></font><font color="red">AAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACTATCA<br>TTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACGGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAA<br>TATCACACTCGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACAGGTTAGTGGGTGCAGCGCACC<br>AGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAAAAAAAA</font><font color="green"><u>AAACAT</u></font>ttcaaaatctactg<br>gataacctagaagtgaaaaatagcctataggttcaaaaactcctgtagtgaagaaagaaaataactaatatacagtgacaatataaatattataaatatt<br>tattttattaccaccctgaaatttgataatacaaacatgtaatagctacatatcatccatatatcaggtcataaaaaatcaacacattcttcaaaaattt<br>agcataacagaaaatgcactctgtctccttgatggaattaaggtaaaaataaaagtaaaaataagtagataagtagatggaagtagatgtttaaaaacaa<br>agaaaaatatttgtttgggataacataaaatctcaattgacaattccaatatttccagaacattgcctgtcaacttgtgt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr7	108365460	108365461	2000325	0	+	L1-7-40; RIP_L1_chr7_108_01	NA	NA	LINE	L1	L1PA4	agtgagaacatgtggtgtttggttttttgtccttgcgatagtttgctgagaatgatggtttccagcttcatccacatccctacaaaggacatgaactcat<br>cattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcgttgttggacattttggttgtttccaagtctttgc<br>tattgtgaatagtgccacaataaacatacgtgtgcatgtgtctttatagcagcatgatttataatcctttaggtatatacccagtaatggaatggctggg<br>tcaaatggtatttctagttctagatccctgaggaatcaccacactgacttccacaatggttgaactagtttacagtcccacgaacagtgt<font color="green"><u>AAAAGTGCTC<br></u></font><font color="red">CTGTTAGGGGACCATCACACTCTGGGGAGTGTTGTGGGGTGGGGGGAGGGGGAGGGGGGGAGGGATAGTATTGGGAGATATACCTAATGCTAGATGACGA<br>GTTAGTGGGTGCAGCGCACCAGCATGACACATGTATACATATGTAAATAACCTGCACATTGTGCACATGTACCCTAAAACTTAAAGTATAGTGATAATAA<br>ATAAAGAAAAAAAAGAAAAA</font><font color="green"><u>AAAAGTGTTC</u></font>atatttctccacatcctctccagcacctgttgtttcctgactttttaatgatagcccttctaactggtgt<br>gagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgttttttggctgcataaatgccttctttt<br>gagaagtgtgtgttcatatcctttgcccactttttgacagggttgtttgtttttttcttgtaaatttgtttgagttcattgtagattctggatattagcc<br>ctttgtctgatgagtaggttgcaaaaattttctcccattccataggttgcctgttcactctgatggtggtttcttttgctgtgcagaagccctttagttt<br>aattagatcccatttgtcaa	Other	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr7	9601176	9602502	2000326	0	+	chr7-9407; RIP_L1_chr7_009_01	GCAACAACCTCATAATACAGGA	CAAGTGACATTATGCTCCTC	LINE	L1	L1HS	cttatgttgatgcaaaagtaattgcagtttttgtcattaaaagtaacagcaaagtaattaaaagtatggcaaaaactgcaattactattgcaacaacctc<br>ataatacaggaaattgataccaagagtgaggtattgctataaagaaatgtaaaaatatggaagcaactttggatctgggtaatgggcagagggtggaaca<br>gtttggagggctcaaaagaagacaggaagatgtgagaaagtttgggacttcctagaaacttgttgaatggttgtgaccaaaatgctgatagtaatatggc<br>caatgaagtccaggctgagggggttgcagatggatacgaggaactccttgagaaccagagcaaaggtcagtcttgctctgcttt<font color="green"><u>AGAAAAGAGACTACTG<br></u></font><font color="red">CCATGTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTT<br>GCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGACCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTT<br>TAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCA<br>GCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTAAAGGGCTA<br>ATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAG<br>AAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACC<br>AGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTA<br>GTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCTAAATG<br>AGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAAT<br>GATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAA<br>TTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGAC<br>ACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGT<br>GGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAATAATAATAA<br>TAATTAATAAATAAATAAATAAATAAA</font><font color="green"><u>AGAAAAGAGACTACTG</u></font>gcgttttgcccctgccctagagatctgtggaactttgaacttgagagatgatctgaa<br>attggaacttacgtttaaaaggaaagtagagcataaaagtttgaaaaatgcgcagcctgatgatgtggtagaaaagaaaaactcattttctggagagaaa<br>tttaagcatgctgcaaacattttcataagtaatgaggagcataatgtcacttgtcaagacaacaatagggaaaatgtgtctagggcatgtcagagatctt<br>gatagcagcccttcccatcacatgcccagagggctagaaaggaaaaatggttttacgggctgagtccaggaccgctctatactgtgcagccttgggattt<br>aatgccctgtatcccagctgctctagt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	60	1864	521	NA	intergenic	
0	chr7	144013694	144013830	2000327	0	-	chr7-1438; RIP_L1_chr7_143_01	TCCCATCCATAGGAAAAGGAT	GCATCAATTTTCTGACTCTCCA	LINE	L1	L1HS	aatgaatatttttttttccacttcgcctctgctttatttctcatgtaccatagaacacagaaaatagtcttacatatcatggataagtggaaaatacatt<br>ggaacttttatttctgacaatatagtcaggtagatattctttaaatatcccatccataggaaaaggattttaaaaaaaaaaagataaaagaaggtataga<br>aaatattagcaacagattatcagaaaagaccttgaattgaaaaaagaatcaaatagaacttctttaaaaagaatcagtaagactataaactttaatgttt<br>taaacaggtgactagacataattgcaagagaggtttgaagaaattacatgcatacacagaaagaaaaggtgatagaagcgacacagttt<font color="green"><u>AAGAAATGTGA<br></u></font><font color="red">CATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAA<br>AAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATGTGA</u></font>agggcagaatgagactgtctaaaaatacgtttaaatggagagtcagaaaatt<br>gatgcgtagagagaatggaaggtaggaaataatggaattaaaagtggctaagaattatccagaactgaagaaagtcatgggtcctcagatttaggaagca<br>cattttgttgttgttgtttttcagacagggtctggctctgtcgcctaggctggagtgcagtggtgccatcttggcttactgcagcctggacctccccagg<br>ctcaagcgatcctccagctcagcctcctaagtagctgggactacaggtgagtgccaccatgctcagctaatttttaaaaatttcttgtagagacagggtc<br>gtgccatgttgcccaggccggtcttgaatttctcagc	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	56	458	310	NA	intron:TPK1:NM:022445:3/9	
0	chr7	32356691	32359637	2000328	0	-	chr7-3216; RIP_L1_chr7_032_01;AC206606	GTGCACCATAGTTGGATCCAG;NA	GAATCTGGTCCAACTAAGGTC;NA	LINE	L1	L1HS	gagattgtattgatgtcatgatattcagttgggtacactgggagtgaggaagtggatgttttcatttcagctcccaaatggatatttctaaaataagaca<br>aatatgaaaaagagaaaaataccttcttctatatcatttcataaactcctccaagctccagttcctctcatgcaagaaatttaaaacaatctcaaagaca<br>atacactcaaataaattgcaaggaaaataaaaaagaatggaggcaatacctgtagactaaaaagatttaaaaatatgttggtcaaatgccatctgtgcac<br>catagttggatccagaatctaacaaactagaaaaaaaaaaaaaacaaaaactacaggcaatacctgtagactaaaaagacttaaaa<font color="green"><u>ATATATTAGTCAAA<br></u></font><font color="red">ATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAAT<br>ACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGA<br>ATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTC<br>TACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCA<br>TCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACT<br>GGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATA<br>AATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGC<br>TAAAAACTCTCAATAAATTAGGTATTGATGGGACATATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAA<br>ACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGG<br>CAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCT<br>CAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAG<br>ACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTC<br>TTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGA<br>AAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTT<br>CATATGGAACCAAAAAAGAGACCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAG<br>GCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACT<br>ATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCT<br>GAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAAC<br>CTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAA<br>TTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAA<br>AGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTC<br>TCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATC<br>TCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTG<br>TAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATAC<br>CCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTC<br>CAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATG<br>GATGAAATTGGAAACCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCA<br>CATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACA<br>CATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAA<br>AAAAAAAAAATATATATATATATATATATATATATATATATATATAT</font><font color="green"><u>ATATATTAGTCAAA</u></font>tgccatgcatagaccttagttggaccagattctaacaaa<br>ctagaaaaagaacctagcaaccatttatgacatttgggagatgattagatattagaacacaatatttgatgatattaaggaattgttctttgtttggctt<br>agttataataatagtattgtggttgtgttaaaaagaaagaccctttatgttctacatacatactctagaacataaagtatgtaagatgaaatgacgtgat<br>gtctggagtttgcttcaaaatgatacaggagggagggaggttaatgggaatgtagaaaggacacaattggctgtgaattgatggtagttggtgctgggaa<br>tagctaaatggcggctcattatattattgtgtttaattttgagtaag	UCSC;UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	62;NA	3099;NA	137;NA	NA;NA	intergenic;intergenic	
0	chr8	18471416	18471653	2000329	0	-	L1-8-44; RIP_L1_chr8_018_02	NA	NA	LINE	L1	L1PA3	ggctagccagttttcccagcaccatttattaaatagggaatccccattgcttgtttttgtcatgtttgtcaaagatcagatggttgtagataagcggcat<br>tatttctgagggctctgttctgttccattgatctatatctctgttttggtaccagtaccacggtgttttggttgctatagccttgtagtatagtttgaag<br>tcaggtagtgtgatgcctccagcttcgttcttttggcttaggattgacttggcgatgcgggctcttttttggttccatatgaactttaaagtagtttttt<br>ccaattctgtgaagaaagtcattggtagcttgatggggatggcattgaatctgtaaattaccttgggcagtatggccattttcacgatattga<font color="green"><u>TTCTTCC<br></u></font><font color="red">TACCACATATTCTCACTCATAGGTGGGAACTGAACAATGAGATCACATGGACACAGGAAGGGGAATGTCACACTCTGGGGACTGTTGTGGGGTCGGGGGA<br>GTGGGGAGGGATAGCATCGGGAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACGTATGTAAGTAACCTG<br>CACAATGTGCACATGTACCCGAAAACTTAAATGGAATG</font><font color="green"><u>TTCTTCC</u></font>atttgtttgtatcctcttttatttccttgagcagtggttggtagttctcctggaa<br>gaggtccttcacatcccttgtaagttggattcctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgt<br>ctgttgttggtgtataagaatgcttgtgatttttctacattgagataccatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacaggt<br>gctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcaggga<br>tctagaactagaaataccatttgacccagccatcccat	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intron:PSD3:NM:206909:11/13	
0	chr8	71746126	71747197	2000330	0	-	chr8-7174; RIP_L1_chr8_071_01	CTGCACCTGCATGTTTATCAC	TACAGGGTCTGGCTTTCACC	LINE	L1	L1HS	atcaggcaaatgcaaatcaaaaccataatgagatatcatcttaccccagttagaatagctgttattaaaaagacaataacagatgctgcagaggatgtag<br>agaaaaaggaactctcatacacagttggtgggaatgtaaattagtacaaccgctatggaaaacagtacagagatgtataaaatacacacacacacacaca<br>cagaactaccatatgatttagcaatcccactactatttgtatatcaaagggacaactgcacctgcatgtttatcacaacattattcacaataggaaagat<br>atgaaatcaacctaaaagtccatcaacaaacaaatggataaagaaaatgtgatatatacacacaataaaatactatttggccat<font color="green"><u>AAAAAAATGAGATCAT<br></u></font><font color="red">ATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGT<br>CAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTC<br>CAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCT<br>ACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTCTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTG<br>TAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAA<br>TGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGA<br>TAAACAATCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGATTGGATTAAGAAAATGT<br>GGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAA<br>ACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTC<br>TGGGGACTGTGGTGGGGTCGGGGAAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCA<br>CATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAA</font><font color="green"><u>AAAAAAATGAGATCAT</u></font>gtcattttcagc<br>aacatggatggaactagagattatgataagtgaaataatccatgcatagaaagacaaatatcacatattctcattcatacgtgggagctaaaaagtttat<br>ctcagccaggcatggtggctcaagcctgcaatcctagcactttgggagaccaaagcaggaggatcacctgaatcgcttgagttcaagagttcaaggttac<br>agtgagctatgatagtgccactgcactgcagcccgggtgaaagccagaccctgtaagtaaataagtaagttaagtaaggaaattaattaagccaaagaat<br>aaaagaaggggagtgcccagattctcaggaatctggtccagaaattactgttccatcctcttctccagggtt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	63	1500	412	NA	intron:XKR9:NM:001011720:1/5	
0	chr10	127735186	127735970	2000331	0	+	chr10-1277; RIP_L1_chr10_127_01	CCTCTGAAACTGCTGCTGCT	TCATTTGAAACCCCTTAGCC	LINE	L1	L1HS	atatcatactttaccactgaaatatggccaggaagtgatgtccctgaggcacagcaatgatagggctcactgccacatggcaaagaaaaggggcatttgc<br>aggagaggcaggctatgatttcatcagccatgtaaacacggggataggacagatgcatttctctatggaatcaaaggcccgaatgcatactccagcccct<br>gtcatctactttgttcattctcttccctggagaatgaagaaaagtggctaactcacgggtagccccaatagatacgatcttttgcttccttttatcagtc<br>ctctgaaactgctgctgctttaatttggtagtggtggtgagggtttgcaaggaaggtgggaggaagatggagcagagccctgttt<font color="green"><u>ACAATGCTTACTCTT<br></u></font><font color="red">GAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGT<br>TTACTGAGAATGATGGTTTCCAATTTCATCCATGTCCCTACAAAGGACATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATATGTGCC<br>ACATTTTCTTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACGTGTGCATGTGTC<br>TTTATAGCAGCATGATTTATAGTCCTTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCAC<br>ACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACT<br>TTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCCCGGGGTCGGGGG<br>AGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCT<br>GCACAATGTGCACATGTTCCCTAAAACTTAGAGTATAATAAAAAAAAAATTAAAAAACAAAAAAACAAAAAAACAAAAAAAAAAA</font><font color="green"><u>ACAATGCTTACTCTT<br></u></font>atccagttggccagggtgccttaccctggagtctccaggctgtaatgagaaatctcccatgaggaacacggatgtttaaaggctaaggggtttcaaatga<br>accaaacttctaaggacgcagcggccggaacttggtcctgtttgcaacacgcccctgctgccccaaactccaatgttaggttgtaggatggtaccatggt<br>gggctctgggccacttcctggggccagggagctgccagctagtggtcgccagagtgattcagcacaactccttccagaaccacacactggccacacccct<br>ccagggtgaaatctacctgtgtggtaggaggttgctctgggagcttggagcagcaacagcactttgtgaaaacggactgtggggt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	62	1001	201	NA	intron:ADAM12:NM:021641:14/19	
0	chr10	5002759	5003160	2000332	0	+	L1-10-47; RIP_L1_chr10_005_01	NA	NA	LINE	L1	L1PA2	caaagcatgtcacaggaatgaagatattctcccagttccagtgtcattactgtatctaagaacatcatctatagtgccctcatgtcatttggtatccagt<br>ccatatttgaatttttccttgcttaatcaaaatatcttttgtagctcttctttttttaaccagaattcaattgtttttatattgttgtattttgatatca<br>gttaacttgtttttcccagttgttgaaggtttctgtaaattagaagttagatgagagtgttttattacattgacttaaacctttggggcaagaaaatatt<br>tttatcatgctgtgtttttcaaattgcaccacactagactgcatacaatcacagaatgccccactagtggtgaaggtagtttt<font color="green"><u>AAAAACTTGGTTAAGCT<br></u></font><font color="red">CCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACAT<br>GGATGAAACTGGAAATCATCATTGTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATC<br>ACATGGATACAGGAAGGGGAATATCACACTCTGGGGACTGTTGTGGGGTGGGGGGAGGGGGGAGGGATAGCACTGGGAGATATACCTAATGCTAGATGAC<br>GAGTTAGTAGGTGCAGCGTACCAACATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTCGAACTTAAAGTATAATAAAAAA<br>AA</font><font color="green"><u>AAAAACTTGGTTAAGCT</u></font>aacagtggtcagatctgttgtttttaactcatgttttctctttaacaattactagtaatctgctgggggataattctcaac<br>agaagaagtcatattcccatgacaaattttcacatatgattgagtatacatcagtgatttgaacttttttctactgcatttctgttttcttctttgttat<br>ttcttatttgttatttccttggggtttttacataatcatttacaattttaaccacttgtttaactattcttacctgacatttaattaaaaatgatttctc<br>accaagtaaaaataataaactactattcctctaagtgagggtaaaggtgaacttcttccttcaattagcaatgtactgtgaacgtaattactgtaatgac<br>ca	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intron:AKR1C1:NM:001353:5/9	
0	chr11	49669598	49670141	2000333	0	+	L1-11-48; RIP_L1_chr11_049_01	NA	NA	LINE	L1	L1PA3	ttccctacaccaaaacttcccatcaattttgttgatgtctcctttgagaatcagatgcctgttaccccagggaaatgcatatgtgcccatccatgtgaaa<br>tgctgcacataatcctaagagggttcacaaactttttagggtctactcatgagccccctggtaataacacctgccgaagctaccaccttaatttctatgt<br>taaaaactgaggagtgggtgggctactgggccctgcttctgaagttaagtgattgggggagctttttaaatcatatttttaaagtgtacctttccctcaa<br>ttttaaccaggatcacttgatcatcataatgtgcatgtattaatggctttatttgagctgttaataatgtccttaaaaatattttt<font color="green"><u>AAGAAATCTGAATC<br></u></font><font color="red">AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATGTCCTTTATAGGGACATGGATGAAAGTGGAAATCATCATTCTCAGTAAAGTATCGCAAGAACAAAACACCAAACACTGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGAACACATGGACACAGGAAGGGGAACGTCACACTCTGTGGACTGTTGTGGGGTGGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACATTGTGCACATGTACCC<br>TAAAACTTAAAGCATAATAATAATAAATAAGTTAAAAAAAAAGA</font><font color="green"><u>AAGAAATCTGAATC</u></font>tcactgttatttctttaaaattaattgaacacacacacaaac<br>aagagaaaatagaaacttaaaatccttcctgtctatactggtgacttaactttgtgatgttttcagtagtaaagccagcctttagctaggagttcataaa<br>tattgagaagcatgatctttttccagagaaagtgcctaccaatttgtgtggattctggttgccaagagacaaagtttagtccattcaaattaagttcaat<br>ggtctaaaaaatgccaattttatgataaaatgctatcttttgtggtagaaaatgtttatttaaaatatttaggcctttaacatgtactctttaaataatg<br>acaaatatgtgcaactttgaaattgagggttttcttttactttt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intron:LOC440040:NR:027044:2/7	
0	chr11	89196252	89197377	2000334	0	-	L1-11-49; L1-11-50; RIP_L1_chr11_089_01	NA	NA	LINE	L1	L1PA2	tatacagatatcctgggattcttgctgagagaagaaaactcagccaaagcctttgggacctcagtcggtagttgtcaccagtgatgcagtcagggtctta<br>cagggaatgcccactgacactaaaggttttgaacttttgttcaaaccaaaggagtctattttcagcctgtcagctctggcgctgaggatcctgaggcagc<br>cattcccctcttagattctacctacaacagggcagtgcagagatggagcagggcctggctattgatatccctgggaacaaatcctccctccctttcctgt<br>ccttagggcatttccctctctttttcacctctcgcctctgcctctccagaataggagactcctttgtgataactcagagtaatcttctt<font color="green"><u>AAGATTTGCTG<br></u></font><font color="red">GGTTGAACTAGTTTACAGTCCTACCAACAGTGTAAAAGTGTTCCTGTTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCA<br>TTCCAACTGGTGTGAGATGGTATCTCATTGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATGTGTTTTTTGGCTGCATA<br>AATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTTGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATT<br>CTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCAAAAATTTTCTCCCATTTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGA<br>AGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGGCTTTTGTTGCCATTGCTTTTGGTGGTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTG<br>AATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTAAGTCTTTAGTCCATCTTGAATTGATTTTTGTATAAGATGTAAGG<br>AAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAACAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTT<br>TGTCAAAGATCAGATAGTTGTAGACATGCGGCGATATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGC<br>TTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACA<br>ATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGC<br>TAGATGACGAGTTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTGCCCTAAAACTTAAAGTATA<br>ATAAAAAAAAATAGAAAAAAAAAAAA</font><font color="green"><u>AAGATTTGCTG</u></font>gggcagggctggagaagatggggtgggtgggtagaagaaaatccagaatggcacactgttttt<br>cgatacatattcattcagccagataagaaggaaacttctgagacaaagaagcttaagttctcaggttctcctttgaaaccaaaatggaacatagccacag<br>attaatgctaaatacctcaaaacatgtagttgacccttaagcgacaagggtttgaaatttgggggtccacttataagtggatttttttcaatgaaagttt<br>cacctagcttgcctgcctctcctgcctcccactccatttcttttatttctgcctctgccactgctgagacactgtcttctcttcctcctcctcttcagcc<br>tactcaatgtgaagacaatgaagatg	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr11	92790416	92790417	2000335	0	+	L1-11-51; RIP_L1_chr11_092_01	NA	NA	LINE	L1	L1HS	ataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatcgagaaaaccccattgtctctgcccaaaatc<br>tccttaagttgataagcaacttcagcaaactctcaggatacaaaatcaatgtgcaaaaatcacaagcattcttatacaccaataacagacaaacagagag<br>ccaaatcatgagtgaactcccattcacaattgcttcaaagataataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaaggagaac<br>tacaaaccactgctcaatgaaataaaagaggatacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcatg<font color="green"><u>AAAATGGCCATAC<br></u></font><font color="red">CGGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCT<br>CACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGG<br>GTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAA<br>GAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTG<br>CAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCAC<br>AGCTCAAGGAGGCCTGCCTGCCTCTGAAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCT<br>GTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTG<br>ACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCT<br>GTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATG<br>GGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGA<br>TGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAAACAAAGGCAAAGAAGTTGAAAA<br>CTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGT<br>GAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTA<br>GAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGACTGGTGTACCTGAAAGTGATGT<br>GGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAG<br>AGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCA<br>GAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATT<br>CAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAA<br>ATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATC<br>ATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACAT<br>AACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATT<br>CAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTG<br>CAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGA<br>GCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTA<br>ATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAG<br>CAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGT<br>TGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTACAACTCAGGATTAAGAAT<br>CTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTG<br>AAACCAACGAGAATAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAA<br>GCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACT<br>AAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATA<br>GACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACA<br>AACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTA<br>AACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATG<br>GATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTC<br>ATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAA<br>ATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCA<br>ATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAAT<br>TCAACAACGCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATC<br>ATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTC<br>TGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTATATCT<br>AGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTC<br>TTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAA<br>GGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGG<br>AAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAA<br>AAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACT<br>TCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAAT<br>GCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTA<br>GCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAA<br>AAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAAT<br>TGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCA<br>ACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGG<br>ACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAAC<br>CACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTA<br>CACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCC<br>CATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTG<br>GAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATA<br>TCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGA<br>ATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATA<br>CCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTT<br>AGAGTATAATAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AAAATGGCCATAC</u></font>tgcccaaggtaatttgtagattcagtgccatccgcatca<br>agctaccaatgactttcttcaaaaaattggaagaaactactttaaagttcatatggaaccaaaaaagagcccacatcgccaagtcaatcctaagccaaaa<br>gaacaaagctggaggcatcatgctacctgacttcaaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaacagaaatatagat<br>caatggaacataacagagccctcagaaataatgccgcatatctacaaccatctgatctttgacaaacctgacaaaaataagcaatggggaaaggattccc<br>tatttaataaatggtgctgggaaaactggctagccatatgtagaaagc	Other	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intron:CCDC67:NM:181645:13/14	
0	chr11	24306072	24312124	2000336	0	+	chr11-2430; RIP_L1_chr11_024_01	AATCACTAAGAAATCTATGCAAGG	CTTTTCCTTTCAACCCACCT	LINE	L1	L1HS	agctggatacattttatttattttaagtaagtaattttactatttttaagtagtaaaatagtgacacctgtaggttatgacatctatatattttatgatg<br>tacacacacacatagagagtaatcactaagaaatctatgcaaggaatatatgcataaattaaaatggaactctaaaaaatgttcaagtaatccacaaaaa<br>ggcaaagaaaaataaacagtgcaataagcaatagagaatgaaagataaaatagataataaaatgccattcttaatctgtaatttatgattacattatata<br>tatttatatacaattatatataaatatataattacattaaatagtctaaaaacaccaactacaaggtagagatttcatagagtggat<font color="green"><u>AAAAACAGAACCC<br></u></font><font color="red">GAGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TAAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGTAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACGTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACAAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAACCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTGTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCTGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACATCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATGTAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACAGAACCC</u></font>aattctatcatgtctacataaactaaattcaaac<br>ataaaaatataggtgggttgaaaggaaaagaaaactgaaaaatgacaaacattatcaaaacaatcatgagaagctgtatttatgttatataatgtaggct<br>tcaggcaaagaaaatttcaagagacaaaaaggtaattacataatgataaaaggatcaatacaccaaaaatctcattagttttaaatgtctatacagcaaa<br>caacagcttcaaaataaagcaaaaaatgtatagaaatcaaaggagaaatagatccacatttatatttggctacttcaaaactacttttagcaattgacag<br>aactactggacagaaatgccacaatgttataaaaaattaaataacaaacaggt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	60	6410	344	NA	intergenic	
0	chr11	121852799	121854468	2000337	0	+	chr11-1218; RIP_L1_chr11_121_01	TCTTTGCTCTCCTAACCAAACTT	TGTTGGGTACTTGGGTCACTC	LINE	L1	L1HS	aggaaggagagatgaaagaagggactgggaactgagagaatgtaattgtttgaaacagccactgggagactcctcaataaatcaaaacaattagctgtgc<br>agtaatcttgtctcccccattatatgattattctggtagaggttaagcctgcatattccatattcattttaaaatctttcattatacctggcatgttatc<br>cctggatcagtatatgtttgtgcttcactgattctttccttataaacctgtgaatatattttcttatctttgctctcctaaccaaacttttaagtaagat<br>ctaagatttaatgagaccagttacatatcttctattgccacagataggagaatcctctggtcttctccagttggttcagaaccctggg<font color="green"><u>AAAGAAAGGAAA<br></u></font><font color="red">TAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATT<br>CAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAG<br>TCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACC<br>AAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCA<br>ATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAA<br>ATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCA<br>AGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAAC<br>TACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAA<br>CAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACA<br>TGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTC<br>AGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGG<br>CGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACA<br>CATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCA<br>CATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTA<br>TCGCAAGAACAAAAAACCAAACACCGCATAATCTCACTCATAGGTGGGAATTGAACGATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGG<br>GACTGTGGTGGGGTCGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACAT<br>GTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAA</font><font color="green"><u>AAAGAAAGGAAA</u></font>aaaaaaaaaaaaagaaag<br>aaacagaaagagagagagagaaagaaagaaagaaaaggaaggaaggaagggaaagagagagaagaggcaaggggacaggggatattatttattgagtgac<br>ccaagtacccaacaatagaattcataggactcttgtaaaattggtatcttgatgcttgactacatagtatctacagctgtgacagtgtaatcaaggtatt<br>gcccacaacagacctatctgtgcacaatcaccatctgtcatttttttacatggataatgaaggaaatcttgtctataattcaatagacaaattaaaatta<br>tcatagacaagtactgattttgttttaccaatacacttattcatttcttctggtcatggcaattcagagg	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	64	1948	247	NA	intergenic	
0	chr15	53005523	53011716	2000338	0	-	chr15-5300; RIP_L1_chr15_053_01;AC210541;AC193136	CTTTATAAACCTGGTGAAAGAGGT;NA;NA	CATTATCCCACTCTCCTATCCTG;NA;NA	LINE	L1	L1HS	gaaatctattggatttataggaaagcatcaaaacagcaaatttttaagtcatagcagttcaagaagagaaaggtaaatgagtagaaagcttatttaatga<br>ggcggtggatcacgaggtcaggagattgagaccatcctgggtaacacagtgaaaccccatctctactaaaaaaaaaaaaaaaatacaaaaaatcagctgg<br>gtgtggtgacaggtgcctgtagtcccagctgcttgggaggctgaggcaggagaatggcgtgaacctgggaggcagagttgcagtgagccgagatgatgcc<br>actgcactccagcctgggtgacagagtgagactccgtcctaaaaaaaaaaaaaaaaaaaaggcagaaacctttataaacctggtg<font color="green"><u>AAAGAGGTAATTATC<br></u></font><font color="red">GATTCATTTCTTTTAGCTGTTTTATAGAAGTCCATCACATGAATATACCACATTTTATTTGTCAATTTCCTTATTGCTGGATGCTTAGATTGTTCCAGTC<br>TTCACTCTTAAAAATATGCTATAGTGAGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGG<br>GTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGA<br>AGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGATGGACGCACCTGGAAAATCGGGT<br>CACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAA<br>TCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAAC<br>AAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAAC<br>AAAAAGGCAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGG<br>GCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACATGGCAGG<br>GTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATC<br>ATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCACCTCTCCTCCTCCAAAGGA<br>ACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGG<br>GAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGC<br>TGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGA<br>TGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCA<br>AATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAG<br>CAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAA<br>AGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCTATCAGACTAACAGCAGATCTCTCGGCAGAA<br>ACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAA<br>GTGAAGGAGAAAGAAAATACTTTACAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTACCCTAAAAGAGCTCCTGAAGGAAGCACTAAACAT<br>GGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCA<br>GCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTT<br>GGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTA<br>CCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCAT<br>TACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGA<br>GTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAA<br>GGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCA<br>CCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACC<br>ACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACA<br>TAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGA<br>GGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAA<br>CACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAG<br>GAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGAT<br>AAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGG<br>ATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAA<br>TAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTC<br>CAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATT<br>TTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCA<br>AGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATT<br>ATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAA<br>TAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCT<br>CTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAA<br>TTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAG<br>GATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTC<br>AAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACA<br>AACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCA<br>TCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCA<br>AAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATA<br>GATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATT<br>CCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCTCTTCCTTACACCTTATACAAAAATCAATTCAAGATG<br>GATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCC<br>AAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGA<br>ACAGGCAACCTACAAAATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAA<br>AAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCA<br>TCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGT<br>GCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGA<br>TCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATG<br>TTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGG<br>AATATTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAA<br>AACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGT<br>CGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAAC<br>TAACCTGCACAATGTGCACATGTACCCTAAAACTTAGGGTATAATAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAG<br>GTAATTATC</u></font>caggaacagaaaggtcaaacttctctaatcagatttaatccaaataaaacctgtcccgagtcatattataatcaaattgtcaaagatcaga<br>gacaacagagacaaaaagatgatactaaaagcaacaagagaaaagaagcaaataccataagggagttccagtatggctagcatcagacttgtcaacagaa<br>accttacaggataggagagtgggataatgtgcacaagtgccaaaagggaaaaaactgtcagtaaagaatactatacccagtaaagtggttcttcacaagt<br>gaatgagatgtaaaggctttcccagacaaggaaaagctgaagaagttcataactagaaaacctgttttataagaaatgctaacagaacttgttc	UCSC;UCSC;UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR;E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA;NA	58;NA;NA	6460;NA;NA	251;NA;NA	NA;NA;NA	intergenic;intergenic;intergenic	
0	chr16	86808546	86810812	2000339	0	-	L1-16-55; RIP_L1_chr16_086_01	NA	NA	LINE	L1	L1PA2	agaaaaactctattggacacaaaattgtctttggaaggcatcatgaggctgctgaggtcatgtcaagtattggagaactctggagaggggagaaccagga<br>aggtgagcaaacatctacagatgctttctctctaggggagaaccaggaaggggagcaatgtctcaggtgccttctctctaggggcatctgccagttgtgg<br>gcacaggcaggaggctgagaaccttgagctgtacccacggagggccacttctggggacagaggaaagagctgagctcttggtggagacttgggctgcctg<br>aaggacctggccaggtttccccacaagtcacatgatgaaaactggggtcatgtggaaatgggatatatggaaggccccagggaagtaggttg<font color="green"><u>GAATTTCA<br></u></font><font color="red">TGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAATGTTTAAGTCTTTAATCCATCTTGAATTGATTTTTGT<br>ATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTG<br>TTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCGTTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACC<br>AGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGC<br>AATGCGGGCTCTTTTTTGATTCCATATGAACTTTAAAGTAGTTTTTTCCAAATCTGTGAGGAAAGGCATTGGTAGCTTGATGGGGATGGCATTGAATCTG<br>TAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTATCCTCTTTTATTTCCT<br>TGGGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTCAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAG<br>TTCACTCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTG<br>CTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGGTTTTCTAGATATACAATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTA<br>ATTGAATACCTTTTATTTCCTTCTCCTGCCTAATTGCCCTGGCCAGAACTTCCAACACTATGTGGAATAGGAGTGGTGAGAGAGGGCATCCCTGTCTTGT<br>GCCAGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAAATACGTCCCA<br>TCAATACCTAATTTATTGAGAGTTTTTAGCATGAAGCGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCGTCTATTGAGATAATCATGTGGGCAAGGACTT<br>CATGTCTAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATC<br>AGAGTGAACAGGCAACCTACAAAATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTT<br>ACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGTACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAA<br>ATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAAC<br>AATAGGTGCTGGGGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCC<br>TCAGGGATCTAGAACTGGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCAC<br>ATGTATGTTTATTGCAGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATAC<br>ACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAATCATCATTCTCCGTAAACTATCGCAAG<br>AACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCGCATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTG<br>GTGGGGTGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCACACCAGCATGGCACATGTATACGT<br>ATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAAAAAAAAA</font><font color="green"><u>GAAATTTCA</u></font>aacacagtcacaaggcaatgttta<br>gacttcaggacccatgaaagactggggccccaaggaacacatcacgctttccatagaaaactctaaaggatcagaaagctcaaaggagatagagtttgcc<br>aggctgcagccccacttgactcagcagagtacctggctggattaaggagaggagttactactgtctcatcctagcacaaggaagggtaaaccctctgtgt<br>gggaaaatagcatcagctggagcctccacgatgcattttattcaccgtgttagtattcaatcaaaaatcacatgtcatgaccaaaggcaggaccacacga<br>ccaaaaaccaagagaaaatacacaacttagaagcagatacagagatgatccagataacagattttgca	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr16	26957618	26957743	2000340	0	-	chr16-2695; RIP_L1_chr16_026_01	GCACCCCTTCTATCTCATGG	GGGCACCTAGAAGAGTAATTGG	LINE	L1	L1HS	tatcatgggagggacccagtggaaggtaattgaatcatgggggtgggtctttcctgtgctgttctcgtgatagtaaataagtctcatgagatctgatggt<br>tttataaagaggagttctcctgcacaagctctttcttccttgctaccatgtaaaatgtgacttgctcctccttgccttccaccatgattgtgaggcctcc<br>ccagccacgtggaactgtgagccaattaaatctcttgtctttataaattatccagtcttgggtacgtctttatcagcagtgtgaaaacaaactaatgcac<br>cccttctatctcatggggaaaataataagacccatcccattgggttgttaaaattaactgaatcaagcatttagaatagtgcctgagacacagac<font color="green"><u>AGTGG<br></u></font><font color="red">CACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAGAAAGGAAAAAAAATAAATAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGTGG</u></font>tagttttaaaaactgttcaacattcaagaattatttatcaagcacttattaagtgccaattactcttct<br>aggtgcccagagtagagttgtgaacagagtaaaatcccttctttcatagaattttattgctattttttctctatggatgtccaaatgtttcggcattgtt<br>tgttgaaaagactatccttcctccattgaattacatttacaccttcatcaaaaattagctgcccatacttgcagggggatatttctgggttttctgtgct<br>attccattgatctgtgtgtctgtccttctgcctatatcacactatcttgaatactgtagctccagaataaatcttagaagtgagtagtatgattttctca<br>ctttagtctttttttcaaaattattt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	64	314	191	NA	intergenic	
0	chr18	12192434	12198459	2000341	0	-	L1-18-57; RIP_L1_chr18_012_02	NA	NA	LINE	L1	L1PA2	tccctgggtgaaccaggatctcctgggtgaaccaggagtcaacagcaaggacagaaacatgaatgtgcttttaaaagtcctaaaaattcagaggatgatc<br>atcaaggtttcctacagccctgggcaaaccttaggagtactttgtctccaggttcaagcatgtgcctgtgagaggcgtggccctcaccttccctccacca<br>caggttgagggaaccctaaacctcttttgcacaatatcaaggagtgctgactaatccaacgcagaagctgtgatgtttggcagatgcagaggcagaaaag<br>gtgttttgggaaagatcatctttaaacaacgcggcaccctcataagcccatagagacagttctcaccactacgccaataaacttgg<font color="green"><u>AAAAGACCAAACCA<br></u></font><font color="red">GCGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGGGTGCGCGCACCGGGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACAGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCTGGGAAGCTCGAACTGG<br>GTGGAGCACACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTCGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAATGGGTGGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCTCAGCAGGGGCACACTGACACCTCACATGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTGCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCCACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAA<br>CAAAGCTGGATGGAGAATGACTTTGACGAGCTGAGAGAAGAAGGCTTCAGACAATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAGCCAAGGCTCG<br>AGAACTACGTGAAGAATTCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATAAAATGAATGAAATGAAACGAGAA<br>GGGAAGGTTAGAGAAAAAAGGATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGCGGAGAATGGAACCAAGTTGGAAAACACTCTACAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTACAGAC<br>AAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCAGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGCGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATAACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATGTAAATGGACTAAATGCTCCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAAACCCGTCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGT<br>ACAAAGCGGATCTAATAGACATCTACATAACTCTCCACCCCAAATCAACAGGATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTGAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGATGTTCTTTGAAACCA<br>ACGAGAACAAAGACACAACATACCAGAATCTCTGGGACGCGTTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTGAATGCCCACAAGAGAAAGCAGGA<br>AAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATC<br>AGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGC<br>TAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACTGATCCCACAGAAATACAAACTAC<br>CATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAG<br>GAAGAAGTTGAATCTCTGAATAGACCAATAACAGGAGCTGAAATTGGGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCA<br>CAGCCAAATTCTACCAGAGGTACAAGGAGGAACTTGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTA<br>TGAGGCCAGCATCATCCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTC<br>AATAAAATACTGGCAAAACGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTTGTTCAATATAC<br>GCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACA<br>ACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTG<br>AATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCA<br>GGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAA<br>CCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATAC<br>ACCAGCAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATG<br>TGAAGGGCCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAAT<br>CAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAGTGACTTTCTTCACAGAATTGGAAAAAACT<br>ACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCACCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAAC<br>TATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAACGCCACA<br>TACCTACAACTATCTGATCTTTGACAAACCTGACAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATA<br>TGTAGAAAGCTGAAACTGGGTCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCC<br>TAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAA<br>ATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAATGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTAC<br>TCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCACATCAAAAAGTGGGCGAAGGACATGA<br>ACAGACACTTCTGAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAACGCAAATCAAAACCACTAT<br>GAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGT<br>TGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTAC<br>TGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATACACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCA<br>ACCCAAATGTCAAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTT<br>GTAGGGACATGGATGAAATGGGAAATCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAA<br>CAATGAGATCACATGGACACATGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTGGGGGGAGCGGGGAGGGATAGCATTGGGAGATATACCTAAG<br>GCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAGTGTGCACATGTACCCTAAAACTTAAAGTA<br>TAATTAAAAAAAAAAAGAAAAAAAAA</font><font color="green"><u>AAAAGACCAAACCA</u></font>aactttacacatatttcctttttctttttgattctatgccccctccctcagcctcccaag<br>cagcaggaataccctgaagggccctgggaacccttgcccactgagtcccacctggaaagcagttccctagctggagagtcctcctcatcagttatgctct<br>ccagcacccacactggagaaacacaaacaacaggagaagtcatttgagagaggctacccactcctactcccgctgaagccccactgcctcacacaggatt<br>ccctggtctttcctctgggttcacagatattcctgcagcctctctggccatagctttctactggaaagtcatttgctctcaccaggcccgtaatgctcct<br>tcccaaaggaacccagaatcaggttt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr18	12171628	12177773	2000342	0	+	L1-18-58; RIP_L1_chr18_012_03	NA	NA	LINE	L1	L1PA3	ccataaattgtgaccaatatgatttcaaaatatgatatggtagattaacattgaaaatgcaataaataaattagccaccataagaggttaatagaggaaa<br>aatatgattattgcaatagatacggaaattcatggaataacattcaccatatatttacaggacaactaccttataaactttaaatgacttattgcaacca<br>tctgaattaatgttgcttaaacagcatgtatcttggctgcttaaaaaccagataagaatttccataacattaatttatttataacaccatattgggtgtg<br>aacctatcataaagttcacccaactataaaggtacacaattgatgatttattaaattgacactgtgtgtagccatcaccatgatctaactt<font color="green"><u>AAAAATGTT<br></u></font><font color="red">TGTTTCTCTGGGGGAGAAGCCAAGATGGCCGAATAGGAACAGCTCTGGTCTACAGCTCCCAGCATGAGCGACACAGAAGACGGGGGATTTCTGCATTTCC<br>ATCTGAGGTACCAGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGACAGTGGGTGCAGCACACCGTGTGCGAGCCAAAGCAGGGTGAGTCATT<br>GCCTCACTCGGGAAGCACAAGGGGTCAGGGAGTTCCCTTTCCTGGTCAAGGAAAGGAGTGACAGACGGCACCTGGAAAATCGGGTCACTCCCACCCAAAT<br>ACTGTGCTTTTCTGACGGGCTTAGGAAACGGCACACCAGGAGATTATATCCCGCACATGGCTCGGAGGGTCCTATGCCCACGGAGTTTCGCTGATTGCTA<br>GCACAGCAGCCTGAGATCAAACTGCAAGGCGGCAGCAAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAAGCAGCCAGGAAGCTCA<br>AACTGGGTGCAGCCCACCACAACTCAAGGATGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACTT<br>CTGCAGACTTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACACAGCTGGAGATCTGAGAACAGGCAGACTGCCTCCTCAAGT<br>GGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGTAGGGGCAGGCTGACATCTCACACGGCCGGGTACTCCTCAGAGACAAAA<br>CTTCCAGAGGAACGATCAGACAGCAGCATTCGCGGTTCACGAAAATCCGCTGTTCTGCAGACACCGCCACTGATACCCAGGCAAACAGGGTCTGGAGTGG<br>ACCTCTAGCAAACTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCCACACCAAAAACCCATCTGTAC<br>GTCACCATCATCAAAGACCAAAAGTAGACAAAACCACAAAGATGGGGAAAAACAGAGCAGAAAAACTGGAAACTCTAAAAAGCAGAGCGCCTCTCCTCCT<br>CCAAAGGAACGCAGTTCCTCACCAGCAACGGAACAAAGCTGGACGGAGGATGACTTTGACGAGGTGAGAGAAGAAGGCTTCAGATGATCAAACTACTCCG<br>AGCTACAGGAGGAAATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGACGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTT<br>AAAGGAGCTGATGGAGCTGAAAGCCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTTTCAGTG<br>ATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAACGAACAAAGCCTTCAAGAAATATAGGGACTATGTG<br>AAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGACGGGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCC<br>CCAACCTAGCAAGGCAGGCCAACATTCAGATTCAGGAAATACAGAGAATGCCACAAAGATACTCCTTGAGAAGAGCAACACCAAGATGCATAATCGTCAG<br>ATTCACCAAAGTTGAAATGAAGGAAAGAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCACAAAGGGAAGCCCATCAGACTAACAGCTGATCTC<br>TCGGCAGAAACTCTACAAGCCAGAAGAGATTGGGGGCCAATATTCAAGCTTCTTAAAGAAAAGATTTTTCAATCCAGAATTTCATATCCAGCCAAACTAA<br>GTTTCATAAGTGAAGGAGAAATAAAATACTTTACAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGC<br>ACTAAACATGGAAATGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGCGACTAGGAAGAAACTGCATCAACTAACGAGCA<br>AAATAACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATGTAAATGGACTAAATGCTCCAATTAAAAGACACAGAC<br>TGGCAAATTGGATAAAGAGTCAAGACCCATCAGTGTGTTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAG<br>GAAGATCTACCAAGCAAACGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAGCAAAGATCAAAAGAGACAAA<br>GAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAACAAGAGCTAACTATCCTAGATATACATGCACCCAATACAGGAGCACCCAGATTCATAAAGC<br>AAGTCCTGAGTGACCTACAAACAGACTTAGACTCCCACACAATAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAA<br>AGTTAACAAGGATATGCAGGAATTGAACCCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTC<br>TTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTGTC<br>TCTCAGACCACAGTGCAAACAAACTAGAACTCAGGTTTAAAAAACTCACTCAAAACCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAGTGACTA<br>CTGGGTACATAACGAAATGAAGACAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACAACATACCAGAATCTCTGGGACACATTCAAAGCA<br>GTGTGTAGAGGGAAATTTATAGCACTAAATTCCCACAAGAGAAAGCAGGAAAGATCTAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAGAAGC<br>AAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAAAATCAGAGAAGAACTGAAGGAAATAGAGACAAAAAAAACCCTTTAAAAAATTAATGAA<br>TCCAGGAGCTGGTTTTTTGAAAAGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGATGCAATAAAAA<br>ATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCGTCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGA<br>AATGGATAAATTCCTCGACACGTACACTCTCCCAAGACTAAACCAGGAAGAAGCTGAATCTCTGAAGTGACCAATAACAGGATCTGAAATTGTGGCAATA<br>ATCAGTACCTTACCAAACAAAAAGAGTCCAGGACCAGATGGATTCACAGCCAAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAAC<br>TATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATCCTGATACCAAAGCCTGGCAGAGACACAACAAAAAAAGA<br>GAATTTTAGACCAATATCGTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCAAATCCAGCAGCACATCAAAAAGCTTATCCACCAT<br>GATCAAGTGGGCTTCATCCCTGGGATGCAAAGCTGGTTCAATATACGTAAATCAATAAATGTAATCCAGCATATAAACAGAACCAAAGACAAAAACCACA<br>TAATTATCTCAATAGATGCAGAAAAGGCCTTTGACAAAATTCAACAACCTTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATCTCAA<br>AATAATAAGAGCTATGTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGC<br>CCTCTCTTACCACTCTTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATTAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAG<br>TCAAATTGTCCCTGTTTGCAGACGACATGATTGTATATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGT<br>CTCAGGATACAAAATCAGTGTACAAAAATCACATTCTTATACACCAATAACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAA<br>GAGAATAAAATACTTAGGAATCCAACTTACAAGGGACGTGAAGGGCCTCTTCAAGGAGAACTACAAACCACTGCCCAATGAATTAAAGAGGATACAAACA<br>AATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGTCCAAAGTAATTTATAGATTCAATGCCATCCCCATCAA<br>GCTACCAGTGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAACCCACATCGCCAAGTCAATCTTAAGCCAAAAG<br>AACAAAGCTGGAGGCATCATGCTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATC<br>AATGGAACAGAACAGAGCCCTCAGAAATAACGCCACATATCTGCAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAGTGGGGAAAGGATTCCCT<br>ATTTAATAAATGGTGCTGGGAAAACCGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACGCCTTATACAAAAATTAATTCAAGATGGATT<br>AAAGACTTAAACGTTAGATCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCGTTACTATTCAGGACATAGGCATGGGCAAGGACTTCATGTCTAAAA<br>CACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAG<br>GCCACCTACAGAATGGGAGAAAATTTTCGCAACCTACTCACCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAA<br>ACAAACAACCACATCAAAAAGTGAGCAAAGGATATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAGACACATGAAAAAATGCTCATCAT<br>CACTGGCCATCAGAGAAATGCAAGTCAAAACCACAATGAGATACCATCTCACAACAGTTAGAATGGACATCATTAAAAAGTCAGGAAACAACAGGTGCTG<br>GAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAAGGATCTA<br>GAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTGTATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTA<br>TTGTGGCACTATTCACAATAGCAAAGATTTGGAACCAACCCAAATGTTCAACAAGGATAGACTGGATTAAGAAAATGTGGCAAATATACACCATGGAATA<br>CTATGCAGCCATAAAAAACGTTGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCGCAAGGACAAAAAACC<br>AAACACCGCATGTTCTCACTCATAGATGGGAATTGAACAATGAGAACACATGGACACAGGAAGGGGAACATCACACTCTGGGGACTGTGGTGGGGTGGGG<br>GGAGGGGGGAGGGATAGCATTAGGAGATATACCTAATGCTAAATGACGAGTTAATGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAAC<br>CTGCACATTGTGCACATGTACCCTAAAACTTAAAGTATAATAAAAA</font><font color="green"><u>AAAAAAGTT</u></font>actctcactgaagttctctcttgcccatttcaatccctactccca<br>tctccagccctaagcaatactgctctgatattctgtctgtataaatttcccatctgtgtaatagaaatggaatcatacaatatattatattgaggtctga<br>ctttaatcatttagttactatttttgaagttaattgatgctttagcttgtgccggtcatgtgttttccttttcattgcttcatagtccattgtgtggata<br>tataaacagtgtttattcattcatcagttgatggacatttaattatttctgttttttgtattatgaataatgctgctttgagcattcataatacagtcat<br>gtaatgtataataacattttggtcaatgatggatagcatgtatgat	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr20	28111757	28112258	2000343	0	+	L1-20-59; RIP_L1_chr20_028_01	NA	NA	LINE	L1	L1PA3	actgtatgcttcaatgggttatgaaactccccttgtagattctacaaaaaaagtttccaaactgatgaatcaaaagaaaagttcaacttttgagatgaaa<br>tcacacaacacaaagtattttaagaaatagcttctttatagtatttatcgcaggctattagattttccaatattagcctcaacaagctctgaaatgtccc<br>tttgtagattgcacaaaatgagtgtttccaacctatggaataaaaaggaaggtttaactctgtgagataaatccaggcatcacaaagcatattcacagat<br>ggcttatttctaatttttgttgtgggatatttggtttttcaataaaggcctcaagcactccgaaatgtccctttgtagattatataac<font color="green"><u>AAGAGTGTTTTA<br></u></font><font color="red">TGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCTATCACTGTTGGATATTTGGGTTGGTTCCATGTCTTTGCTATTGTGAA<br>TAGTGCCGCAATAAATATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAGTCCTTTGGGTATATACCCAGTTCATGTCCTTTGTAGGGACATGGA<br>TGAAATTGGAAATCATCATTCTCGGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCATTCATAGGTAGGAATTGAACAATGAGAACACA<br>TGGACACAGGAAGGGGAACATCACACTCTGGGGAGTGTTGTGGGGTGGGGGGAGTGGGGAGAGATAGCATTGGGAGATATACCTAATGCTAGATGACGAG<br>TTAGTGTGTGCAGCGCACCAGCATGTCACATGTATACATATGTAACTAAACTGCACATTGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAAA<br>AA</font><font color="green"><u>AAGAGTGTTTTA</u></font>aaagtgctgaatcaaagcaaatgtgtaactctttgagaggaatccacacatcacaaagcatattttcagatcacttgtttctagtt<br>tttaaagcatgatattcggtttttcactatatgcctcatcaggctcagaaatgtctcatagtagattttacaaaaatagtgtttcctacctgctgaatca<br>aaacaaccgtttaaatctgtgagatgacgccaaacctcgcaaagcattctcacagacagttttttcctagtttttatcgcaggatattcggtttttcagt<br>ataggcctcaatgaactttgaaatgtccattcataggttctataaaagtgtgttcccaactccctgtataaaagcaaaggtttaactctgtgaaatgaat<br>ct	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr22	15375520	15378569	2000344	0	+	L1-22-60; RIP_L1_chr22_015_01	NA	NA	LINE	L1	L1PA3	caggccttttcagtcatgctatcagttttgttccttttttctgttttactcttggtggagttactttttttccttgttacttgaataagaaaaataacaa<br>actagaaggctgggtgcggtggctcacgcctgtaatcccagtactttgggaggccaaggcgggtggatcatgaggtcaggagtttgagatcagcctgacc<br>aacatggtgaaatcccatctgtactaaaaatacaaaaaaaatagccgtgcgtggtggtgcatgcctttaatcccagctactcaggaggctgagacaggag<br>aatcgcttgcatctgggaggcggaggttgcagtgagctgagatcgtgccactgcactccagcctaggtgacagagcaagactccatctcaaa<font color="green"><u>AAAAAAAA<br></u></font><font color="red">AAATCCAAAACTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACGTTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCA<br>GAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATTAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATAGATAGACCGCT<br>AGCAAGACTAACAAAGAAAAACAGAGAGAAGAATCAAACAGAAGCAATAAAAAATGATAAAGGGGATATCACCACTGATCCCACAGAAATACAAACTACC<br>ATCAGAGAATACACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTCAACACATACACCCTCCCAAGACTAAACCAGGA<br>AGAAGTTAAATCTCTGAATAGACCAATATCAGGCTCTGAAATTGTGGCAATAATCAATAGGTTACCAACCAAAAACAGTCCAGGACCAGATGGATTCACA<br>GCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATG<br>AGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAA<br>TAAAATACTGGCAAAACGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAACATACAC<br>AAATCAATAAATGTAATCTAGCATATAAACAGAACCAAAGACAGAAACCACATGATTATCTCAATAGATGCAGAAAAGGCCTTTGACAAAATTCAACAAC<br>CCTTCATGCTAAAAACTCTCAATAAAGTAGGTATTGATGGGACGTATTTCAAAATAATAATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGAAAG<br>TTCTGGCCAGGGCAATTAGGCAGGAGAAGGAAATAAAGGGCATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTATA<br>TCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTGCAAAAATCACAGGCA<br>TTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCCCAATTGCTTCAAAGAGAATAAAATACCTAGGAATACAACTTA<br>CAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAATCCACTGCTCAAGGAAATAAAATAGGATACAAACAAATGGAAGAACATTCCATGCTCATGGGT<br>AGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTATAGATTCAATGCCAGCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTG<br>GAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGTATCACACTACCTG<br>ACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAAATCAATGGAACAGAACAGAGCCCTCAGAAAT<br>AACACCACATATCTACAACTATCTGATCTTTGACAAACCTGACAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACAGG<br>ATACCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATACAAGATGGATTAAAGACTTAAACGTTAGACCTAAAACCA<br>TAAAAACCCTAGAAGAAAACCTAAGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCTAAAACACCAAAAGCAATGGCAACAAAAGCCAA<br>AATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGCGAACAGGCAACCTACAACATGGGAGAAAATTTTC<br>ACAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCCAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCAA<br>AGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAAACACATAAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCG<br>AAACCACAATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACT<br>TTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGCGTGGCGATTCCTCAGGGATCTAGAACTGGAAATACCATTTGACCCAGCC<br>ATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACATATGTTTATTGCGGCATTATTCACAATAGCAAAGG<br>CTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTT<br>CACGTCCTTTTTAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGT<br>GGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGGAGGGGGGAGGGATAGCACTGGGAGA<br>TATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAA<br>ACTTAAAGTATAATAATAATAAAATAATAAAATTAAATTAAATTAACCAT</font><font color="green"><u>AAAAAAAA</u></font>cagactagtaaatgcaaccatttacaaattccaagagactct<br>tgaagattctttttgttagtagggaaaacattctccatttttctgccaactttagggttttcagagaagtttgggggagagaaaggaaagcaaagatgtg<br>ggaagaaagagtacttgcagccccaagttgggcgaactcctcccagctacttataccacagggtttggggagcagagcccctttcattaaacttttagga<br>gtcttggatggatagggtgggaattacaccagtgaaactcagctttgtgtgtgccaggcattgggccctgggatatgcagtcatgtgttgtataatgaca<br>ttttagtcaatgacaaaccacacgtaagtcagtggtaccataagatgatt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chrX	48003836	48005113	2000345	0	-	L1-X-62; RIP_L1_chrX_047_01	NA	NA	LINE	L1	L1PA3	aacaaatatgtcccctttctattcctgaaatgcacaaagatctctacccaagaacctgtctttttttcatcctatgttatctccgctcactgacaattgg<br>gaaagctctctgtgtgttggatgaggggtcactctttcaaactcacttccaagctcatcatggagaattggggttgtttgggaatgtgaagactatttgg<br>tttcaataaagtatggagaaacagcaatctttattacatgtgttcatcaccctctctcttaagatatttatccaatatctacatgctgttaatgaaacaa<br>tgtctggaagtttttggtggatctatacttttaatagtttctttttttttcacttttaaaattgtcttaactgtcctttgattcatt<font color="green"><u>AACAGTGTTTAGC<br></u></font><font color="red">TATCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGATTTTGCTGAAGTTGCTTATCAGCTTAAGGAG<br>ATTTTGGGCTGAGACAATGGGGTTTTCTAGGTATACGATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATT<br>TCCTTCTCCTGCCTAACTTCATGTCTAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCAC<br>AGCAAAAGAAACTACCACCAGAGTGAACAGGCAACCTACAGAATGGGAGGAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTAC<br>AATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCAAAGGGCATGAACAGACACTTCTCAAAAGAAGACATTTATGCAG<br>CTAAAAAACACATGAAAAAATGCTCACCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACACCAGTTAGAATGGCAAT<br>CATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGG<br>AAGTCAGTGTGGAGATTCCTCAGGAATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCT<br>GCTATAAAGACACATGCACACATATGTTTATTGTGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAA<br>GAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGCAGGGACATGGATGAAATTGGAAATCATCATT<br>CTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGAACACAAGGACACGGGAAGGGGAACA<br>TCACACTCTGGGGACTGTTGTGGGGTGGGGAGAGGGGGAAGGGATGGCGTTGGGAGATATACCTAATGCTAGATGATGAGTTAATGGGTGCAGCGCACCA<br>GCATGGCACATGTATACACATGTAACTAACCTGCACATTGTGCACATGTACCCTAAAACTTAAAGTATAATAAAAAAA</font><font color="green"><u>AACAGTGTTTAGC</u></font>aagaacaac<br>atgtcttttaaaaaagaaatgtttcaaacacacagaatagtatggggaataatattgagttcagtcgcatctcaacattaccccatgactatgttagatc<br>tgatttatttatttagaatgttagaaacactagaaacggcctgggtgcagtggctcacgcctgtaatcccagcactttgggaggctgaggtgggtggatc<br>acctgaggtcaggagtttgagaccagcctggtcaacatggtgaaaccccatctctactaaaaatacaaaaattaggtgggcatggtggcgggcgcctgta<br>atcccagctactcaggaggctgaggcaggagaatcgtttgaacccgggaggcagaggttgtagtgggctgagactgtg	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intron:SSX1:NM:005635:4/8	
0	chrX	16337618	16338133	2000346	0	+	chrX-1618; RIP_L1_chrX_016_01	GGATCAAACAGGGCTGGATA	TGGATGTGTCTTGGTTTGGA	LINE	L1	L1HS	cttcttttccgatgttttccacacacagatgtattaacactgttctttcaaggaaagcatggagagctctagctgatcaaatgaagtgctctcagactag<br>agcaggcaaggataatgtatcaagtatccattacgacctaacaaaccaccccaaaacttagggacttaactgctattttgtttgcttatcagtctatcag<br>caatttatgctaggctcagctgagtggttcctctgctgatctgggcttgggtcactcatgtgagtatagtcatcaggtggatcaaacagggctggataca<br>tttttttttttttggtgcttctagacaatttttatttatttatttattttgagacaggctctcactttaagggctggataatt<font color="green"><u>TAAAACAATGATTATCG<br></u></font><font color="red">CATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTG<br>GATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACC<br>ATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGG<br>GGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACTAATGCTAGATGACACATTAGTGGGTGCAGCG<br>CACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>TAAAACAATGATTATCG</u></font>gtaacaattataattaggttgaccatgtaatttgtagtccaaaccaagacacatccaaagtaaaatg<br>ggagggtctaaaataaatgaaatatttatttcatttaatttttttaacatttaaatatttaaaatatttaatatcttattttgaaataaaatatttcaaa<br>aaaagacatgaaatcaacctagatgcccatcagtgatagactggataaagaaaatgtggtacatatacaccatggaatactatgcagtcataaaaaagat<br>gaaatcatgtcctttgcagcaacatggatgcagttggagaccattatcctaagcgaattaatgcagggacagaaaaccaaataccatgtattctcactta<br>taaatgggagctaaac	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	60	712	177	NA	intergenic	
0	chrX	31008289	31008290	2000347	0	-	L1-X-64; RIP_L1_chrX_030_01	NA	NA	LINE	L1	L1PA3	aactcactcaaaaccacacaactacatggaaactgaacaacctgctcctgaatgactactgggaacataacgaaatgaaggcagaaataaagatgttctt<br>tgaaaccaatgagaacaaagacacaacataccagaatctctggaacacatttaaagccgtgtgtagaaggaaatttatagcactaaatgcccacaagaga<br>aagcaggaaagatctaaaattgacaccctaacatcacaattaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataa<br>ctaagatcagagaggaaatgaaggagatagagacacaaaaaattcttcaaaaaatcaatgaatccaggagctggttttttgaaaagat<font color="green"><u>CAACAAAATTGA<br></u></font><font color="red">GAAAACCGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATTAATTCAAGATGGATTAAAGACTTAAAGGTTAGAC<br>CTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCTAAAACACCAAAAGCAATGGCAAC<br>AAAAGCCCAAATTGACAAATGGGATCTAATTAAACTCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAG<br>AAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATAACCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAA<br>AGTGGGAAAATGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAGACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAAT<br>GCAAATCAAAACCACAATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATATGGAGAAATA<br>GGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCAATTCCTCAAGGATCTAGAACTAGAAATACCATTTG<br>ACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCACTATTCACAAT<br>AGCAAAGACTTGGAACCAACCCAAATGTCCAACGATGATTGACTGGACTAAGAAAATGTGGCACATATACACCATGGAATACTATGTAGACATAAAAAAT<br>GATGAATTCGTGTCCTTTGCAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCTCAAGGACAAAAAACCAAACACCGCATGTTCTCAC<br>TCATAGATGGGAATTGAACAATGAGAACACATGGACACAGGAAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGGAGGGGGGAGGGATAGCA<br>TTAGGAGATATACCTAATGCTAGATGACCAGTTAATGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACATTGTGCACATGT<br>ACCCTAAAACTTAAAGTATAATTAAAAAAAAC</font><font color="green"><u>CACCAAAATTGA</u></font>tagactgctagcaagactaataaagaagaaaagagagaagaatcaaatagatgcaa<br>taaaaaatgataaaggggatatcaccaccaatcccacagaaattcaaactaccatcagagaatactataaacacctctatgcaaataaacttgaaaattt<br>agaagaaatggataaattcctggatacatacaccctcccaagactaaaccaggaagaagttgaatctctgaagaccaataacaggctctgatattgaggc<br>aataattaatagcctaccaaccaaaaagaagtccaggaccagacgaattcacagccgaattctacaagaggtacaaggaggagctggtaccattccttct<br>gaaactattccaatcaatagaaaaacagggac	Other	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chrX	69737591	69737592	2000348	0	+	L1-X-65; RIP_L1_chrX_069_01	NA	NA	LINE	L1	L1HS	agtaaagctctcctcagcaaatgtaaaagaccacaaattataacaaactgtctctcagaccacagtgcaatcaaactagaactcaggattaagactcact<br>aaaaaccgctaaactacatggaaactgaacaacctgctcctgaatgactactgggtacataaggaaatgaaggcagaaataaagatgttctttgaaacca<br>acgagaacaaagacacaacataccagaatctctgggacacattcaaagcagtgtgtagagggaaatttatagcactaaatgaccacaacagaaagcagga<br>aagatccaaaattgacaccctaacatcacaattaaaagaactagaaaagcaagagcaaacattcaaaagctagcagaaggc<font color="green"><u>AAGAAATAACTAAAATCAG<br></u></font><font color="red">GGAGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACAGGTGATTTCTGCATTTCCATCTGAG<br>GTACCGGGTTCATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACC<br>TGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTT<br>TTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAG<br>TCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTG<br>GGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCA<br>GACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTC<br>CCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGA<br>GGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAA<br>CCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAATGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGA<br>ACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAA<br>GAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTC<br>GAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGA<br>AGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCT<br>GAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTC<br>AGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTT<br>AAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGG<br>GGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAAAAAATACTTTA<br>TAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAATCACTAAACATGGAAAGGAACAACCGGTACCAGCC<br>GCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCA<br>AATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAG<br>TGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAACAAAA<br>GGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACGAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATT<br>CAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACT<br>CCCACACATTAATAATGAGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGC<br>TCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATT<br>GACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCA<br>GGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAA<br>GATGTTCTTTGAAACCAACGAGAACAAAGACACAACATACCAGAATCTCTGGGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGAC<br>CACAACAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGC<br>AAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAA<br>CAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCC<br>ACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGGTACATTCCTCGACACATACACTC<br>TCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGTCCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCC<br>AGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATC<br>CTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACA<br>TTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCA<br>AGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCC<br>TTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATCTCAAAATAATAAGAGCTATCTATGACAAACCCA<br>CAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGT<br>GTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATG<br>ATTGTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAAT<br>CACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAAT<br>CCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGC<br>TCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCA<br>CAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCAC<br>ACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCC<br>TCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGG<br>AAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGACTTAAATGTTAGACC<br>TAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACA<br>AAAACCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGA<br>AAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAA<br>GTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATG<br>CAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAG<br>GAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGA<br>CCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGCTTATTGCGGCACTATTCACAATA<br>GCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATG<br>ATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACT<br>CATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCAT<br>TGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTA<br>CCCTAAAACTGAGAGTATAATAAAAAAAAAAAAAAGAAAAAAAAAATAAAGAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATAACTAAAATCAG</u></font>agcagaactgaaggaa<br>atagagacaaaaaaacccttcaaaaaattaatgaatccaggagctggttttttgaaaggatcaacaaaattgatagaccactagtaagactaataaagaa<br>aaaaagagagaagaatcaaatagatgcaataaaaaatgataaaggggatatcaccaccgattccacagaaatacaaactaccatcagagaatactacaaa<br>cacctctatgcaaataaactagaaaatctagaagaaatggataaattcctcaacacatacactctcccaagactaaaccaggaagaagttgaatctctga<br>atagaccaataacaggctctgaaattgtggcaataatcaatagcttaccaaccaaaaagagtcca	Other	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intron:TEX11:NM:001003811:25/31	
0	chrX	146366946	146367037	2000349	0	+	chrX-1462; RIP_L1_chrX_146_01	GTAAACGACAGGCAGCAGGT	GAAGCAGCCATGCATACAGA	LINE	L1	L1HS	aatgtgaaaatgggttctgtaatagctgtaaaaaggcctggcccaagaccactgtgagctagaaaagggagagagatagtgggaaaagaggtgagccgca<br>gatcgattcggtagacggtgtgtatgcccctctctatttgacttcacatacactcataactttccaaatagagttactttcttaaaccatacaagaattg<br>gaagaaccagtttgatttgttaaaccgttatttcttacaagctttacctgctgttacagtaactactgttaacctaatagaaaattgagtactttgaagt<br>agggtcatactataacaaaatcttaaaatatttggcattggtttagagggtaaacgacaggcagcaggtgatgaggaaatagacat<font color="green"><u>AAGAAGCTAAACAA<br></u></font><font color="red">CACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGCT<br>AAACAA</u></font>attggagtggtgtatcattccagaacaagatactgagcaaaactattgcctatgataacttgtaagacgcaacatgtacctattaaactggtag<br>ctcttggagaaaaatggctttaaaagcattagtctgtatgcatggctgcttcttgtgtttggcaaggtgatagtaacttgataggtttagttaggcatta<br>caagaaaattatgagctcagaaaagaattgcgaattttccaaaaattacttatttgtattcatctatgaaaaactattgggtcctaaattggcaccagca<br>aaaagcgtattgcaaaacctgggcatctcccatgaaagagaatgttccccctacatccatgataaagccaagtaccaaagaccaccagagaa	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	63	303	197	NA	intergenic	
0	chrX	90835290	90835544	2000350	0	+	L1-X-67; RIP_L1_chrX_090_01	NA	NA	LINE	L1	L1HS	ttaattgactcttcctttcatgaaagatttctctgtggcacgtgatgctgtttgatagcattttacccacagtagaacgttcacacttggagtcaatcct<br>ctcaaactctgccaccactttatcagctaagtttatgtaacattctaagtcctttgttgtcatttcaaaaatgttccacagcatcttcaccaggagtaga<br>ttccacctcaagaaaccaatttctttgctcatccataagaaccaactcatctgctcaagttttatcatgagattacagcaattcaggcaaaccttcagtc<br>tccacttctaatctagttctcttgctatatccaccacatgtgcagtttttctattggaaaaagccttcttttccaatagaaggctatttcatcc<font color="green"><u>AAAAAA<br></u></font><font color="red">CCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTGG<br>GGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTA<br>ACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u>AAAAAA</u></font>gaaaatctgttgtgtagtgtagctaccttcattaattaa<br>cacaatcttcagcagcttgctgcagcttctccctcagcacttgatgcttcaccttgcacttttatgttatgaagatggcttcattccttaaatctcattg<br>aaacaacctctgcaaaattcaaacttttttcctgctgctttctcatctctctgtcttcattgaattgaagagggttagggccttgttgtggattaggttt<br>cagtttaaggcaatgatgtggctactttgaccttctattcagattactcaaactttctccatatcagcaataagtctgcttattcttcttatcattggtg<br>cgttcagagtaacactttcaatttccttcaagaacttttccttgatattcacaat	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr5	33833312	33833313	2000351	0	+	AC008826; RIP_L1_chr5_033_01	TAAGCCTTTATGTTCACTTTTTATG	CTCCCCAAAGCCAAACTTCAC	LINE	L1	Ta1d	ctctgagaaaccttcttctataaaggcatctctaaatccaggcatgaaaaaataatatcctgataacaagaatgtgaacaagcaactctttacatcacgt<br>caacaaatctagatgcctagcctcccacagccccatgccagttgctagcaagaagaatttagacttcacttttacagaccttgagtggtcaagggtctgt<br>aatcttcctggccaagcctgttgaagagggctcctgccctataaaatgggaggatatgccattgacactggagactaattaaatgctatctcctggagtt<br>ataagaaatagggaagttagtaaacactggaattaaagaagttgtgaacagagtgtgtaactgctagcactttgataaatcttttctctaaaataaaact<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>cttatacaaccaatctgaaacacaggagaaagattctgggatccagagggacacagcgagattgaccctgagttgaccat<br>ggctgagcgcagaagccaaagtgagctggcttttaatgtcagaacttagtgatgaaggttccccacagagaaattcagtacattcccaaccactctagac<br>tatgttcgcattccttataaaatatgataaataataccttacttacttgggttgtcgtaaggattaatggaattgtatttgtaattatttctagcacaat<br>aaatactgatgtgttttcttcttcttaaaaaaaagttactatgaatatttctcaagctattatggaacctgaatgagtactaaatagagagcatagccca<br>actccacaaatatgctacac	Other	<UL><LI>Badge RM, Alisch RS, Moran JV. ATLAS: a system to selectively identify human-specific L1 insertions. Am J Hum Genet. 2003 Apr;72(4):823-38. Epub 2003 Mar 11.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12632328">PMID:12632328</a>.</LI></UL>	E:Retrotransposon display:ATLAS; E:Insertion-specific detection:PCR	 TSD unavailable	64	NA	NA	NA	intron:ADAMTS12:NM:030955:2/24	
0	chr2	36423924	36423925	2000352	0	+	AC009414; RIP_L1_chr2_036_01	ACTCGGTGACTTCGTGCCTC	AGACTCCCACAATTTTATTTTAGG	LINE	L1	Ta1d	tacaggcgtgagccaccgcgcctggccctaaggcacttttaaaatgagtgttttactgctctacttgcagataagcttccctgatgatatgcttagactc<br>ccacaattttattttaggaacttaaaaaaaaaagtttataatgagaaacaaaccaaaaggaactctccctttactcctttggtggctttcagaatgtaac<br>aagaagaaagatgtttacatctttgcacagttctttttttaaatttttattttttttataatttcaacttttattttagattcagggggtacatgtgcag<br>gtttgttacaaggatatattgcatttgcacagttctgacactgacaaatgcagtatctgcatcacctagacaggttttagatagctgaggaacaggacaa<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tgatgaaatcaatttatcactttaggccagtttgtctcatttccctggccatttcagcatttaagaagacaaggagatgg<br>gaaagacctagaagctctattggtcagtaggccttaggtgaactcatggttctgaataaggtaaatggccaccacccaaagcagcaagtaaggacatgga<br>agtaccatacaacctagcaggatgttctaatgtggaatacgataaacagaccagattcagtgtacaatgagttggttctagattgagagcactaccgtgc<br>cacagtgaggcacgaagtcaccgagtcccagatctgaatcctaacccaggcgcatgcattatgtcctcagaatatttatgtaatttctgtgaagcttttt<br>ttcacagttccccatctgta	Other	<UL><LI>Badge RM, Alisch RS, Moran JV. ATLAS: a system to selectively identify human-specific L1 insertions. Am J Hum Genet. 2003 Apr;72(4):823-38. Epub 2003 Mar 11.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12632328">PMID:12632328</a>.</LI></UL>	E:Retrotransposon display:ATLAS; E:Insertion-specific detection:PCR	 TSD unavailable	64	NA	NA	NA	intergenic	
0	chr18	49705057	49705058	2000353	0	+	AC087224; RIP_L1_chr18_049_01	TCATTGGTTTTAGATGTGTCTGCAA	CCCTCATTGGAACAAGAATCAGA	LINE	L1	Ta1d	tccagtgattcaagaagtccaacaatcccttatcctataacagtgaaactacagaaaaattaaagacaaaaaatattaagtcaatcagaataaaaaagta<br>ccctcattggaacaagaatcagagacagtgggagctaaatgatgagaacacatggacatatagagggaaaccacacacactggggcctgttggcgtgtgg<br>agggtggcagtggagagagaatcaggaaaaataactaatgagtactaggcttaatacctgggtgatgaaataatctgcacaaatacccatgacacagatt<br>tacctatgtaaaaacctgcacatgtacctctgaacttaaaacttttgaaaaataaaaaatgtttagcaattaaaaaaaagaattacaaatagttgaattc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ttaacagcaataatgaaaaccggaaagcggtgagaaatacctataaggtaccgaaggaaaactaccaattttctatgaaa<br>aatttaatccataatggagacaaaatgaagacactgtcagacaaacaatatctcagctaatttgccacttgcagacacatctaaaaccaatgatgagtta<br>atgaccattcttggattaatttctactccaggctgaaagaaaagaacaaaaacaagaaaacagatgcagcctccaagattctagaagaattgaaagcaat<br>gagtatagtaaatatatggataaatcaaatgtattttggatgaataaaataataatagcagtatatcatgtttaaatatgatacatttttatattaaaat<br>atgtgtataatatacaaaaa	Other	<UL><LI>Badge RM, Alisch RS, Moran JV. ATLAS: a system to selectively identify human-specific L1 insertions. Am J Hum Genet. 2003 Apr;72(4):823-38. Epub 2003 Mar 11.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12632328">PMID:12632328</a>.</LI></UL>	E:Retrotransposon display:ATLAS; E:Insertion-specific detection:PCR	 TSD unavailable	64	NA	NA	NA	intergenic	
0	chr6	16187539	16187540	2000354	0	+	AL021407; RIP_L1_chr6_016_01	TCAAACTCTCCAGGCAACAGG	CGGGAAATGGTGAAGCTAAGG	LINE	L1	Ta1d	aaaaatctttgcaaactgcaggtcaaactctccaggcaacaggtaaggagatttttatattttctcttttctcccttatataaaaggagaggcaagagta<br>tttcctcctgcagattgtaaattagttcaggccctatggaaagaagtttgcagatttctcatagaactaaacatagaattaccattcgacccagcaatca<br>atctcattaatgggtatatacccaaaggaaaataaatcattctaccaaaacacacatgcacatgcatgttcctcacagcactagtcacaatggcaaagtc<br>atgggatcaacctaggtgcctatcaacagtggactggataaagaaattgcggtacatatacagcatggaatactactcagccatacaaaagaatgaaatc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>atgtcctttgcagcaatgtggatgcaactggaggtctctatcctaagtgaattaaacacagaaacagaaaaccaaataac<br>acatgctctcacttataagggagctaaacattgggtacacatgggcataaagatggaaacagtatacactggggactccaaaggaagggaggtggggagg<br>ggagcagggattgcaaaactacctattaggtactatgctccttacttgagtgacagggtcagtcacaccccaaacttcagcattacacaataagctcatg<br>taacaaacttgcacatgtaccctctgaatccaaatttttttttaaaaaaagaatatttcctcctacagaagtggtagcagttatgacctagcttcaccat<br>ttcccgaggcaagatgaata	Other	<UL><LI>Badge RM, Alisch RS, Moran JV. ATLAS: a system to selectively identify human-specific L1 insertions. Am J Hum Genet. 2003 Apr;72(4):823-38. Epub 2003 Mar 11.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12632328">PMID:12632328</a>.</LI></UL>	E:Retrotransposon display:ATLAS; E:Insertion-specific detection:PCR	 TSD unavailable	64	NA	NA	NA	intergenic	
0	chr14	58290156	58290157	2000355	0	+	AL121819; RIP_L1_chr14_058_01	AGAAAACGCAGTTCCAAGCAAAA	ATCCCCATTACCACATCTCATTT	LINE	L1	Ta1d	tattttaattgcaaatttaaaaattcccaatcttgtgattttcttccaaagcagttgttactcagctcctaacacttctcgtattctacacgtctttaat<br>cactcttttcacttttgcctcagggaagcaatatccaatttacgaacatgtttttttctaaaagattatttgtaaactggttattgggaactaaaaatac<br>atttttccatagaagttataacgttgtaaatagcagttaaaatctcaacagactcttcatacagtaaaactcattaataataatatacagctattactat<br>aaggaagtgagttcctcattctaattctaaattgagcctctacctaatcaattaactcctgtgggctcatgattgttctaatcaaaaataagagaacagg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ccaggcatgatggctgatgcctatagtctcagtgctttgggaggctgagatgagaggattgcttgaagccagaagttcga<br>gaccagcctgaacaataccgtgagaccctatctctacaaacaataaaaattatctgggtgtggtggcatatatttgtagtactagatacttgagagactg<br>aagaaggaggaccccttgagcccaggagtttaaggctgcagtgagctatggttgtgtcactgcactccaaacagaggaaggtcctgtctctaataacaat<br>aataaaaatagaactattcaaatcaagaaatatcaagtgtttgtgtggaatgcaacttaagctcaatattataatgtcacacagaatggcatgaaggcaa<br>ttaggccagggtccgggggc	Other	<UL><LI>Badge RM, Alisch RS, Moran JV. ATLAS: a system to selectively identify human-specific L1 insertions. Am J Hum Genet. 2003 Apr;72(4):823-38. Epub 2003 Mar 11.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12632328">PMID:12632328</a>.</LI></UL>	E:Retrotransposon display:ATLAS; E:Insertion-specific detection:PCR	 TSD unavailable	64	NA	NA	NA	intergenic	
0	chr9	110604791	110604792	2000356	0	+	AL358779; RIP_L1_chr9_108_01	GACAATGGACAGTTGAAAATATGA	GGGATGATTCTATCTGATTCTAC	LINE	L1	Ta1d	gggatatctttccagttttttttgttgttgttgtttgtttttcatgtctgacacccatatagctccacctggacccatggctccatccagaccaacaact<br>ccacttttgtggccccacccagaagcaattcggatcccaagaggacagcttcaaccctctatgatttcctctccatcccaatcaaaaatttttgaaaagc<br>attgttttctttacccttaatattttttcaaaaaaagacaatggacagttgaaaatatgaatactattaataagtatgggattacaaactgaatatattt<br>aagaaatattagggatgttgaaagtggaaaatcttaaaccttattggtttattgagctagttaatggtgtttttcaattgtgactacaataacaaaatta<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>actacaataacaaaattaaagaacttatatgaaatgttggagagatagcctcaaagattgtgactaaaagacaaggtatt<br>atttgagactatatttcagctattaggtttacgatcttcaccttatacctggtctatctattcttggatgtgttcaacttttgcataagcattcaggaag<br>gcgtatatgtataaaagtaaggaattgcctacaacctggccttttccatagctgtgatagtgcttcacacagtagaacacacccaggaaataggcaagcc<br>agtgcagacccaggtgcaggcagcacctaaaccacgcaggtgtagaatcagatagaatcatccccagacaccaggtcaaagtgaggcccaagtcaacaaa<br>ctcaagaggccttgagagtg	Other	<UL><LI>Badge RM, Alisch RS, Moran JV. ATLAS: a system to selectively identify human-specific L1 insertions. Am J Hum Genet. 2003 Apr;72(4):823-38. Epub 2003 Mar 11.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12632328">PMID:12632328</a>.</LI></UL>	E:Retrotransposon display:ATLAS; E:Insertion-specific detection:PCR	 TSD unavailable	64	NA	NA	NA	intergenic	
0	chr4	141822680	141822681	2000357	0	+	AF417122; RIP_L1_chr4_141_01	NA	NA	LINE	L1	L1HS-Ta	caatttacttcacatggccactttctgaaacagagatctgactacagtattcccaccttataatcttccacaggctctcagtgaaagagaaaagaaatct<br>gcactgaatcttaacccataaaatctgctctcaatcttcccaagtcaacctttccaggtccagcataaataccaccttccctgtgaaaccagcccaattc<br>caaatgggttctaagcattctcacgtctatgttgtcttaatttacatgctggcagaaaatagcatgtttatatgtccttctaccactaaatatgaattcc<br>aaagataaaaagaatgtctcgaacattttaatcaccaatatctagcacctaaaagatgttcaatattactaaatgaatccatgttgttgtttttccaaat<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATTATTAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>nnnnn</u></font>taaaagatatcttaaggggccatatcttagtctttattgtataatccagagttgcagatttctaa<br>atctacaattgttttggagttagcaatgcctgagaaattaggtaccaagttgctaacttctgttcctctgtcatactggagggcattatggatagcaata<br>gaagtagcaatgtgcttccctggaaaaatatctaacataaggatattttcctctatttaccactgatatcactctaccaagagaacaaagacattaagct<br>cgatgaaggccaggagggagctcaattttggacccaggctattctagggacaagcaggcgttggtagtgttactttaagaacttcagacaactgaaggca<br>gcatgagggcatgggacccgtgggtgggaaggaga	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intron:TBC1D9:NM:015130:3/21	
0	chr17	29837724	29837725	2000358	0	+	AF417126; RIP_L1_chr17_029_01	NA	NA	LINE	L1	L1HS-Ta	tagatgagtagagtttcagttgcgcaagatgaaaaaattctggagattggttacacaaccgtgtgaatatatttaacactactgaggtgtgcacttacaa<br>atggttaaggctgggtgtggtggctcacgcccataatcccagcactttgggagactgaggtggcaggattgcttgagtctaggagttcgagaccagcctg<br>gcggacatggcgaaaccccatctctagaaaacatacaaaagttacccaggtgtggtggtgtggtgcctgtagtcccagctactccgggggctgaggaagg<br>aggatccctttacccaggaggttgaggcagcagtgagctgtgactgtgccactgcactttaacttgggcaacagagccagaccctgtatcaaaaaggtaa<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTNTAATAAAAAAAAAAAAAAAAAGGAAAGA<br>AAAAAGGCATTGTAGACCAAA</font><font color="green"><u>nnnnn</u></font>aaaaaaaaaaaaaaaaaggttaagaaggtaagatggtaaaatttatttatgtgtattttgtcacaatttaactt<br>aaaaaaaaacagaaagagagcctatgtccaggagctcaatgcggaggtctgctacatcttgcatttcaagtatatttcctaaaaaaaaaaaagagaaaaa<br>gacaccaaggagacttgttctttgaatgaaattgttgtacagccttttgtggcatgaagaattctgtgagtaagaaaagcatcctcatccagcctgtctg<br>tgtcggttagagactagcacgttttgcaaaaacagcacattttctcctcatgatgcgataagcatcgagctggcaccctacctgctagtgtgaggctggc<br>gcatgaagcactcctgctgggagagt	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr6	108893166	108893167	2000359	0	+	AF417127; RIP_L1_chr6_108_02	NA	NA	LINE	L1	L1HS-Ta	tcagtgggtagactttcttgtttgcattgtctgcacaaaggcctactttatagtagcatcccactgatggggcaattactcagaatggagctgtttcaca<br>ggaatgaaaggaagtcacttaaattctttatccttactcagtgtctgtctctccttaggagaaggaagaggagatgatttatagcaactgaacttaattt<br>atttatttccacctgatcatttttatgctacccaggtcactattagtcaagatactcttctttgtggttaaaatggaattatacaaagctgaacgggata<br>ttttcttctatgctatgtgacattatattcttgtggccccaaaagaaaactctaaatttagctccttatttacactgaaaaagaaaatcatgttaaattt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTACCCTGCACAATGTGCACATGTNCCCTAAAACTTAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u>nnnnn</u></font>agtgccg<br>tcttcatgctgtggtctttccatacaactactgttgactaccagatgtctctacttcctcaaattttactggttaggctggaatatctttcaattatgtt<br>tacagtttgagtttaattttaatcactgtttgtatttttatataatctatatccttgcatattttttgtacatttgtttttcatataggcttgttgctga<br>ccttaggtcttatgtcccaaataccagatttttaaaaatgagataatcctggtccttctttagagcctcacaagcatggatatatttctgaatagagatt<br>tttagtgtaaggcaatgttactatctttttaaatggtttcactacagaactaacaagagggccctagagtcatagagtcactgctgctgctgc	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intron:LACE1:NM:145315:8/13	
0	chr5	33832946	33832947	2000360	0	+	AF417128; RIP_L1_chr5_033_02	NA	NA	LINE	L1	L1HS-Ta	tcttccctttcctaagtttatcttgaaagtatatatgtgctgagatcaagcctatggcaacctggatcctgtagggtctatgaagagcaggaaaagaaat<br>ggtgcaaggagcaacttcaaaagcctccccaaagccaaacttcaccctcatcatcatttgattaaaaaacataaaattatgtgctttcaaatgagagctg<br>tggactccctaagtccagcctttgggaatggaagactggatgatgaactcagtgattgttgatggatagagactccttcaaggaagcttgacttctctcc<br>aactactggatcaaagcatgtccaaattgaaaggcaaaaacctcacagaaggcaggactgagaggactctgagaaaccttcttctataaaggcatctcta<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>nnnnn</u></font>aatccaggcatgaaaaaataatatcctgataacaagaatgtgaacaagcaactctttacatcacgtcaacaaatctagatgcctagcctcccaca<br>gccccatgccagttgctagcaagaagaatttagacttcacttttacagaccttgagtggtcaagggtctgtaatcttcctggccaagcctgttgaagagg<br>gctcctgccctataaaatgggaggatatgccattgacactggagactaattaaatgctatctcctggagttataagaaatagggaagttagtaaacactg<br>gaattaaagaagttgtgaacagagtgtgtaactgctagcactttgataaatcttttctctaaaataaaactcttatacaaccaatctgaaacacaggaga<br>aagat	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intron:ADAMTS12:NM:030955:2/24	
0	chr13	85719411	85719412	2000361	0	+	AF417129; RIP_L1_chr13_085_02	NA	NA	LINE	L1	L1HS-Ta	gaaaaacacaaaaatagtaaattaagaaaattttgatatatttagagaagactagtagactaatgtgagaaaaaatacactaatagttcaaaacaaaaat<br>taaaaaatatataatttgagactaaggtatgtgtaaggtacatgggtgtactttggtcaacaataggctgacgcagacatctgagccagagtgactcagc<br>gagtttggagtgcaggtatataactccacttgttatataacctgtttgtgtaagctcatacatggcttggagccactattgtttgaaaaagatataactg<br>ccctgctgacactgtataggcactcttgcagccagagaaagagagagtgctaaagctgtccatcttgtagacggacagggggaagctagggcatggcaca<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAGGAT</font><font color="green"><u>nnnnn</u></font>gctcgtctcacacacacccagagagacagtattgctactgacccctgtaaaggagagccagtcaccttgaaggccagc<br>aggggggatccagaaaccagcttgtgcccagagggaaagagttaagctgctgactctgacagagctggccttgcaggccagggagtacagcttcaggcat<br>gggggtggcaggagccacagagccggctgctgatatgagacacagctggagcagaaagctgagttaaaggcggacagcatgagacagctagcgtgagtaa<br>gctgctaatgagagagctgctgaataaaactacatctcacctgcctacccctgaaatggggtaaaattatatgaattattaaattaagtttagcctaaag<br>ctgtgtccttacatattttaag	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr20	41384745	41384746	2000362	0	+	AF417131; RIP_L1_chr20_041_02	NA	NA	LINE	L1	L1HS-Ta	aagagaggcatgcttcaactgcaagaaaataaaagtgttccaagcagtgaaatatttgaccttggagtaaactgctataataagtagtatgctcccttca<br>ctcacagtatttcagtcgggctgaaagatcatcggggtgcctagaggagaagttttcatgcacttctcaaattctatgatgctccaaatcagagggttgg<br>acaaaataattgtgcttaaaacctgcccttgtggtcctcttgtctcatataacacttagcaatctctctctttgcagactggctgaaatgcaatgagagt<br>gcctgatgacacataatttttggcacagaattcacgacattcatctcaaatgtccaagctactactataaattaacagatcttcacacacacacacacat<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGCAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAGAAAAAAAAAAAAAAA</font><font color="green"><u>nnn<br>nn</u></font>acacacacacacacacacacacatagctcatctcaaaagtgtgagagaacttccgaaccatgtgagaaaaccaaggcttttggaagaatatggctctg<br>cgtctgtcaagtcaggaatccatccttctagaagggcacggtagtcagaggaaagtcccctctcctctaacacacacacgttgatgtccacctcctaatc<br>cccagcacctgtgaatatggtaccttacaaggcaaaagggactttgtaggaatgattaagttgaaggactcttagatgggtgacattcccctaggttatt<br>tcgctcctccagtcgaatcatgtgagtcctcataagcagagatgcctctcctgactgcagtcagagaaccagagaggcgcagcaggagaagaacttggcc<br>ac	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr14	44244004	44250057	2000363	0	-	AF417133; RIP_L1_chr14_044_01	NA	NA	LINE	L1	L1HS-Ta	acattaatgtaaggtatatttataatcataatagattttaagaatttaccgaagaggataggtaagtagaagtaaatgaaaaggccagatgcggtggctc<br>acacctgtaattccagcacgttaggaggcggaggcaggtgggtcacttgaggtcaggagttcaagaccagcctggccagcatggtgaaaccccatctcta<br>ctaaaaatacagaaattagccgagtgtggtggtgcatgcctatagtcttagctacttgggaggctgaagcaggagaatcccttaaatccgggaggtggag<br>gttccagtgagctgagattgagccactgcactccagcctgggtgacagattgagactctgtctcaaaaaaaaaaaaaaaagaaaagaa<font color="green"><u>AAGAAAACATAG<br></u></font><font color="red">GGTGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGGGTGAGCGACGCAGAAGACCGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGTGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCACCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAACTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCTATCTGTACATCACCATCATCAAAGATCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAATGGAAC<br>AAAGCTGGATGGAGAATGACGAGCTGAGAGAAGAAGGCTTCAGAGGATCAAATTACTCTGAGCTACGGGAGGACATTCAAGCCAAAGGCAAAGAAGTTGA<br>AAACTTTGAAATAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCGAAAACCAAGGCTCGAGAACTAC<br>GTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGTTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTT<br>TAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGAT<br>GTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATAC<br>AGAGAACGCCACAAAGATACTCCTCAAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGC<br>CAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACTCTACAAGCCAGAAGCGAGTGGGGGCCAATA<br>TTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAACTACTTTATAGACAAGC<br>AAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAA<br>TCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCAACAGCTAACATCATAATGACAGGATCAAATTCACAC<br>ATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTA<br>TTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGT<br>TGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAG<br>GAGCTAACTACCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACAT<br>TAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCA<br>AGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATA<br>GTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGA<br>ATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTT<br>TGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAACGCCTACAAGAGA<br>AAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTGGCAGAAGGCAAGAAATAA<br>CTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGA<br>TAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATA<br>CAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGAC<br>TAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGA<br>TGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAAC<br>TCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTTATGAACATTGATGCAA<br>AAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCGTGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTT<br>CAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAA<br>ATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACGCACAGCCAATA<br>TCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGT<br>TCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATCGTTTAT<br>CTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGTTAAGCAACTTTAGAAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCAT<br>TCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTAC<br>AAGGGATGTGAAGCACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTA<br>GGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCGTCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGG<br>AAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGA<br>CTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAAGAGAGCCCTCAGAAATA<br>ATGCCGCATATCTACAACTATCTGATCTTTGAGAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGC<br>TAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTGACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCAT<br>AAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAA<br>ATTGACAAATGAGATCTCATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCA<br>CAACCTACTCATCTGACAAAGGGCCAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCAAA<br>GGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAA<br>ACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTT<br>TACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGGGTGGCGATTCCTCAGGGATCTAGAACTGGAAATACCATTTGACCCAGCCAT<br>CCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACT<br>TGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCA<br>TGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGG<br>GAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATA<br>TACCTAATGCTAGATGACACGTTAGTGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACT<br>TAGAGTATAATAACAAAAAAAAAAACATTAAAAATAAAAAAAATAAAAAAAAAG</font><font color="green"><u>AAGAAAACATAG</u></font>ataagattgcgggaaaattggaagctaattcata<br>gtgtggcttgtatattatttgaagcagaaggacagaattaaagctgcccaaaccaaattaagccaaaaccaaaacccaaacaaagtaacgctcaattgaa<br>ccattttagttgttactgtccatcttaagaatacattcattatagctttcttctcagaagaacctctggacagtgtttttggttctaatataattgtaga<br>aagaatgttgtaaatatacagtgaatatcccacagaccttcctattttagtcccagaggccctctctgccccaggctgggtcctcctggtcaggctctgg<br>atagtcctggtaatagtaatgccactatttctgttatgttgtaaaatagcaata	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr13	71866678	71866679	2000364	0	+	AF417135; RIP_L1_chr13_071_01	NA	NA	LINE	L1	L1HS-Ta	ttaaaaaactgaactgatggaagcatagaatagaatagtagttacctggggctgggttgagaaggagagtagggtgaaatgctcaaaggatacaaaattt<br>caattagataggaggaatacgctgaagatgtctcttgtacaccattgtgactattgttaataacaatgttttctattcttggaaattgctgagagtaaat<br>tttaagtgttctcgccacaaaaacgataagtatgtaaggtaatgcatatgttaattagcttattttaggcttctacaatgtatacatatattaaaccatc<br>atattgtacatgataaatatataaagtcaaaatttttgatgaaaataaattaccaaagctgactcaaagtgttatccaatctaacaactatggaatgtaa<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAATAATAAAAAAAAAAAAAAAAG</font><font color="green"><u>n<br>nnnn</u></font>gaaagtagaactaccaaacagctacccctgaaaatgacacggggcccatatttttttaatagacaaactttactgattatccatttgaaagacaaa<br>tcattcctacagatgctttaaaaggtattttcaaaagcattaaagaaatgaaaaatatcaccattcattttacagtattaacattactaaagaaagaaaa<br>tttcaaggaaagaaaactgtagagcaaattcatttaggactgaaatacaaagcatccttaaacaaacaaacaaaatgaatccataacagtattcttaaag<br>gttagcaaacaccgtgaccaaataaagatcattttaagaatgtaaagatagtttgctcttattatataatcatctcattagatacccagaaggtatttaa<br>taag	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr6	55702867	55703089	2000365	0	-	AF417136; RIP_L1_chr6_055_01	NA	NA	LINE	L1	L1HS-Ta	aacagaaaaaagtgctaccagtggaccagaaagttttaacaaaccctggaaaccaaaaagtaggtggaatgggattaatggagaaaacagagcagaagaa<br>ttcaagccaagattccagaagtgagagcaatcaatcctgatggagcccatgagaaattctaaactcaatgacatcaacacaaagaataggagagggtcct<br>gggaatcatcatggaaattaattaattaaacaactgctttattaatagctgggcctagagagaccttttcctttctcctcctctggaatatatgcagatg<br>atatggctgacagcagtagtatttgcctccaagctagaacctaacacttgtctggagaggtattctagaatgagttttggcctgagagagaagtag<font color="green"><u>AGAA<br></u></font><font color="red">GGATGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATG<br>TATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAATAAAAAAAAAAAATTCACACAGCTGTACAAACAAATAAT<br>GACTGAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAA</u></font>atagctccagacatttacttcagacaccaagaaaatatcaagtaaaagaagaaaacaaaaatttcatctagta<br>gtgaaatacagtaaaatactttatctccagagtaaaactcttcttaatttgataattgaagggatctctagcctacctgctccatacctaagcaccctac<br>agtggtattgatttgttgacatgaccctgctctctaagagaaatcagtggttggccctctcatttaaaggagaagctcttgggaaaataggtaaacacaa<br>ccagagagaaaattctatgactcaactttgtacatgttgagaactaggagctaagatcaacacatatttgggggaagaaaaaccacaaaataaaagaaag<br>aagaaaatatatccatcaaatcc	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr6	113131642	113137677	2000366	0	+	AF417137; RIP_L1_chr6_113_01	NA	NA	LINE	L1	L1HS-Ta	ttaagattagcttatctcttctgggctcttggagtcttaaattgaaaacactgctttgatatatgtgtgtcgctatgatttgcacactgttaaaatgaat<br>atcagatggttttatatttttgcaaaggcaatagctcaagcaggtaaactttatcttatgatctgaaaaccaagatgttgagacatggatatcaaagaat<br>attgcttaattactttaaatatcttaatattttaaagacttgaccttaacaaaaattaatttaaattatgttgtacgttataagatgtatatccagcaca<br>cacttattaagtatctggacacagacaggaaagtaagaaaggcctttcaccaaggaagttaaacaaagctacagatacgttccattt<font color="green"><u>TAAAGAGAAGCAG<br></u></font><font color="red">GAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACAGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCACTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGAG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGGCGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACATCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAATGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTACCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAATGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATA<br>ACTAAAATCAGACCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTG<br>ATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAAT<br>ACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGA<br>CTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAG<br>ATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAA<br>CTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCA<br>AAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGT<br>TCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAA<br>AATTCAACAACCCTTCATGCTAAAAACTCTCAAGAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAAT<br>ATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAG<br>TTCTGGCCAGGGCAATCGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATG<br>ATTGTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAAATTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAAT<br>CACAAGCATTCTTATACACCTACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAAT<br>CCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGC<br>TCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCA<br>CAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCAC<br>ACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCC<br>TCAGAAATAATGCTGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGG<br>AAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACC<br>TAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACA<br>AAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGA<br>AAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAA<br>GTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATG<br>CAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAG<br>GAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGA<br>CCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCTTGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATA<br>GCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCACATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTTGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTTGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAATAAA</font><font color="green"><u>TAAAGAGAAGCAG</u></font>atgactggtggaaaaggcaccacccaagagaaagatatacttggattgtat<br>gaactatgaaatgggctttgagacagcaggaacacctcaagagagaaacaataatccagtaaatactaaacattaagtgaaatgcctagaaaaactcttt<br>taagatattttcacaggaaattcaaacatgataaagcataaggaaatccacagaggttgctgataagtcttgatttgcaaacttattcatgtttctttca<br>gataaatgacatgatgacagtcagaagacacaagacactaaattgtccctcaatccactgttccaatagcatgtgtgctcctgcctcacttgactagtga<br>ataggagatgaaatcaattcagccagtgattacttt	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr11	48712423	48712424	2000367	0	+	AF417138; RIP_L1_chr11_048_01	NA	NA	LINE	L1	L1HS-Ta	aaggatattttttagcgccctgaagcctatggtggaaaaggcaatatcttcacataaaaactagacagaagcattcttagaaacttctttgggaggagcc<br>aagttggctgaatagtaacagctcaggtctacagctccaagcatgagcaaggcagaagacaggtgatttctgcatttccaactgaggaaccgggttcatc<br>tcactggggggtgccagaaagtaggtgcaggacagtgggtgcagcacactgtgcatgagccaatgcagggcaaggaatcacctcaaccaggaagcacaag<br>gggtcagggaattccctttcctagtcaaagaaaggggtgacagaaggcacctgaaaattgggtcactcccaccctaacactgcacttttccaacaggcat<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTANNTACCCTGCNCAATGGGCACATGTCCCCTAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>nnnnn</u></font>a<br>aaaaagagctcaccaggagattatatctcgtaccttgctcagagggtcctacacccacagaatctcactcattgctagcacagcagtcagagatcaaact<br>gcaaggcaacagcgaggctggggaagaggtgaccaccattgccaagttagttgattgattaggtaaacaaagcagccaggaagctcaaactgggtggagc<br>ccaccacagctcaaggaggcctgcctgcctctgtaggcgccacctctgagtgcagggcacagataaacaaaaagacaacagtaacctctgcagacttaaa<br>tgtccctgtctgacagctttgaagagagtagtggttgtcacagcatgcagtttgatatctgagaacgggcagacagcctcctcaagtgggtactcatcc	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr5	135774621	135775060	2000368	0	+	AF417140; RIP_L1_chr5_135_01	NA	NA	LINE	L1	L1HS-Ta	ttttagtagagacggggtttcaccgttttagccgggatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacag<br>gcgtgagccaccgcgcccggccgtttcctgactttttaatgattgccattctaactggtgtgagatgatatctcatagtggttttgatttgcatttctct<br>gatggccagtgatgatgagcatttcttcatgtgttttttggctgcataaatgtcttcttttgagaagtgtctgttcatgtccttcacccactttttgatg<br>gggttgtttgtttttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgagtaggttgcgaaaattttctcccatt<br><font color="green"><u></u></font><font color="red">CACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATA<br>AAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATAT<br>TCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGG<br>ATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGC<br>ACATGTACCCTAAAACTTAGAGTATAATTAAAAAAAAAAA</font><font color="green"><u></u></font>taaaaataaaaaaaaaaaaaaaagaaggaggggagactgactccatcatcaacatccaag<br>tgctctgttgggtttgccttccaatccaaactgtcccaagtttgaagctcctcctctccccagcactctattcctctcaaggttgacatttttatttgca<br>tgaagcctgatgatagcactccttttccctcaggaaaaaatccacactgcttagctaacatcctttggacctcacttctacctacttctgcacctcattt<br>ctggcactttctcctcagtctctatgctcttgccattgttgattttttaaaaaaatatttttttgcttctcaaaccctctgcttcttttacctctgggcc<br>ttggaatgtgctgtttcctgatctggaacttcttcttcct	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr3	156111566	156115326	2000369	0	+	AF417141; RIP_L1_chr3_156_01	NA	NA	LINE	L1	L1HS-Ta	agtgaagaaacaactcacagaatgagagaaaatatttgcaaactatacatctgacaagggattaataaccagaatatataagaagctcaaacaattcaat<br>aagaaaaaaattaataattcaattaaaaaatgcacaaaagatctgagcagacatttctcaaaagaagacatacaaatggcaaacagatatatgaaaagat<br>gcgcaacatcattgatcatcagagaaatgcaatcaaaagtacaatgacatattatcttactccagcttaagtggattttatcctaaagacaggcaataac<br>aaattttggtgagaatgtggagaaaagggaactcccaaacactgttggggcaaatgtaaattagtacacccactatggagtacagcatggaggttcctcc<br><font color="green"><u></u></font><font color="red">AAAGACTTAAAATAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACATGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTA<br>CCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCAT<br>TACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCA<br>GTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAA<br>GGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCA<br>CCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAAAAAACTATCTCTCAGACC<br>ACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAGACTGCTCCTAAATGACTACTGGGTACA<br>TAATGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGA<br>GGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAGGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAA<br>CACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAG<br>GAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCAAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGAT<br>AAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGG<br>ATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAA<br>TAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTC<br>CAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATT<br>TTGGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCATATCAAAAAGCTTATCCACCATGATCA<br>AGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATT<br>ATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAA<br>TAAGAGCTATCTATGACAAATCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCT<br>CTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAA<br>TTGTCCCTGTTTGCAGACGACATGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAG<br>GATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTC<br>AAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACA<br>AACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCA<br>TCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATAGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCA<br>AAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATA<br>GATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGTATT<br>CCCTATTTAATCAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATG<br>GATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCC<br>AAAACACCATGTCTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACC<br>ACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTAC<br>ACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCC<br>ATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGG<br>AACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATAT<br>CCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTTAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAA<br>TTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGGGGAGGGGGGAGGGATAGCATTGGGAGATATAC<br>TTAATGCTAGATGACACATTAGTGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTA<br>GAGTATAATAAAAAAAAAACATATCCCAAATTCAAAAAAAAAAAAAAAAAAAAAAAAAGAA</font><font color="green"><u></u></font>ctaccatatgatccatcaatcccactgctaggtatatac<br>ccaaaagaaaggaaatcaatataaagaagagatgtctgcacttccatgttcattatcaaactactcacaatagccaatatttggaaataacaaaggacaa<br>atgttacttctcacttatttgtgggagctagaaaaattaaaacaattgaactcatgcagctagagagttttatgatggttaccagagactgggaagggta<br>gtggagtcggggtggggtggagagtgaagatggttaatgggaacaaaaatgtggttagatggaatgaataagatctagtatttgatagcacgatagggtg<br>actacagtcaacaataatttattatatattttgaaataactaaatgagtataattggatag	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr5	154782270	154782271	2000370	0	-	AF417144; RIP_L1_chr5_154_01	NA	NA	LINE	L1	L1HS-Ta	taaaagaccaaaagaacacaaaccatcaagaagaactgataaattgacaacactgtaatttagaggtttggcacaacaaaggacaccataaacaaaatga<br>acaatgagctccaggtaaggggaagacattaggattggacaactgaaaagtgattcatctctaagagctcctataattcaacaagaaaaaagattacctg<br>aaaacaaaccaaaaacatgggcaaagaatatgaggcagcaattcatagaccaagacacccaaatggataatagatgaatgaaaagtttcttgaccacact<br>ggtagaaagttataaattaaaacagcaatgagatagcatcaaattgacaaaaatgttaaagtctgacaatactgagtcctggtcatgatgtaaagaacta<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAATCTTAGAGTATAATTAAAAAAAAAAACACATAAAAAAA<br>AAAAAAAAACAACAAAACAAAGCAAACATGGAAATGTTTGTTATTTTAATTGTTATGATGGTTTCATGGCTGTTTGCATGTGTCAAAACTCATCAGATTT<br>GTGTACGTTAAATATGTGAAACTTATTGTATGCTGGTTACACCTCAATAAAGCTGTTAAATTNNAAAAAAAAANNAAAANNAAAAAAAANNGGACTC</font><font color="green"><u>nnn<br>nn</u></font>ccatacactgctgataagggtttaagttggtacaatcactttggacaaccactgacaataactagtaaagttgaaaatgtgtatactgtaaaatccag<br>caaagcattctcctagatcagttgttctcaacaggagggaagtggggtcagggaggagttgtggttctttactcaggagtcatttagcaaagcctgaaga<br>ccattttggttgtcacagctgaggtgaggggcaaggacacgactggtatctagtggatagaggctagagatctgtcctacaatgcacaggtcacctctac<br>cccccaaagaattatctggctcaaaatatcaataatgctgagctgggaaaccatctatcgtgagctgaatggcatccttcaaaagttacgtccacctgga<br>ac	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr1	71021182	71021183	2000371	0	+	AF417146; RIP_L1_chr1_070_01	NA	NA	LINE	L1	L1HS-Ta	tgacctaatccccagtgtgatggtatttgaagttgaggcttttggaaggtgattaggtcatgaaagtgaagccctcataaatggcattagcacctttata<br>aaagagatgacagatgtgcccttgtcccttccaccatgtgaggatgcagcaagaagacactgtctatgaaccagggtacaggttctcagcagacactgaa<br>tctgctggcaccttggtcttgaacttcctagcctccagaaatgtgaaaataaattgctgttgcttataaaccacccaatctatggtactctgttatagca<br>gctcaaaggactaagacagttaagtaaatttaaataatgtataaaatatttataaagaataaagagaaaataagctccaaatgcccatcacccatcttaa<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTGAGAGTATAATAAAAAAAAAAAAAANGAAAAAAAA<br>AAAAAAAAAAAAAAAAAAG</font><font color="green"><u>nnnnn</u></font>gaaaataaatacttttattacctttcaaacctctgtacactttagtatatccttccccctccaaagaaagtactat<br>tctcaactttgagtttatcattttcttttcttttttttttttttttttgtgatggagtctcagtctgtcacccaggctggagtgcagtggcacaatcgca<br>gctcactgcagcctccccctcccaggttcaaatgattcacctgccccagtcccctgagtagctgggattacaggcacccaccaccatgcccagctaattt<br>tgtattttttagtagggacagggtttcaccatgttggccaggctggtcttgaactcccaacttcaggtgatctgcccacctcgacctcccagagcactgg<br>gattacgggcgtgagtcactgccc	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chrX	81633308	81634802	2000372	0	-	AF417147; RIP_L1_chrX_081_01	NA	NA	LINE	L1	L1HS-Ta	tttgtatataccctttgtcatgttgaggaagtccacttgttttaatagatttctgagtgtttttatcatgaaagaatgtcagatttttcaagtgattttt<br>ttttgtgtcaattgagagaatcatggtttgtttcccctttcattccatgaatgtgctgttacattgatggattttcttatgttgaaataatcttacattt<br>ctggaatatatgccacttgtccgtagtgtataattattttaatatgatgttgaattcagtttgatagtattttattgaggacttttgcatttatacttat<br>aaggaatattggtgtattatattcatgtcttgtgaaactttgtctgactttagtatcagggtaatgctcttttcataaaaccaatt<font color="green"><u>AAGAAGTATCTCTC<br></u></font><font color="red">TTGCTGTGCAGAAGCTCTTGAGTTTAATTAGATCCCATTTGTCAATTTTGGCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCAC<br>GCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTA<br>TAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGT<br>TTTTCTCAGCTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTCCCATTGATCTATATCTCTGTTTTGGTACCA<br>GTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCG<br>ATGCGGGTTCTTTTTTGGTTCCATATGAACTTTAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAA<br>TATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGA<br>AGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCA<br>GTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAG<br>TTCAACCATTGTGGAAGACAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGA<br>CTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAGAGACTTGGAACCAACCCAAATGTCCAACAATG<br>ATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAAT<br>TGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACA<br>CAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTG<br>GGTGCAGCGCACCAGCATGGCACATGTATACATATGTAAGTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAA</font><font color="green"><u>AAGAA<br>GTATCTCTC</u></font>ctcttctaatttttagaagattttgagaaatattggtgataatttattaaatgtgtgatgtaatttaccagtgaggccatctggtcctgga<br>ttttctttgttgggagtttttttaatgctaattatctatttatttattgtacatgaataagttttttagtggtgatttgtgaaattttgtgcacccatca<br>cccaagcagtgtacactgtacccaatgtatagtcttttatccctcaccaccttctccccctttcccctgagtcccaaaagtccactgtattattcttatg<br>cctttgcatcctcgtagcttagctcccacttatgattgagaacatacaatgtttagttttgcattcctgaattatttcactcagaataacggtct	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr2	73207903	73208362	2000373	0	-	AF417148; RIP_L1_chr2_073_01	NA	NA	LINE	L1	L1HS-Ta	cctgacctcaggtgatccacccgcctcagcctcccaaagtgctgggattacaggtgtgagccactgcgcccgccttgatcatgtcttatataacaatgat<br>tttgtaatattttgtaaagttagaataaaaagtaatttagtctttttttttaatacagataaaaccaaaagatagtgtttagggcttgcacttgggagat<br>gtgttagacagcgacatgcacagcccaggtccccgcaagggcagatatatcctcttagtttcctcttgttcgtgatggtttcttggtctttccttgtgtc<br>tcatgatcttgacacttttgaagggtactgattgggtatcttgaaggatgtccttcaatttggatttgtctgatgtttttctcttgatt<font color="green"><u>AGAAAACAGCT<br></u></font><font color="red">TGGAACCACCCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGTTGAGTTCA<br>TATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGG<br>GAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATA<br>TACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATATAACTAACCTGCACAATGTGCACATGTACCCTAAAAC<br>TTAGAGTATAATAATAAAAAAAAAAACACACACACAAAAAAAAACAAACAAACAAAAAAA</font><font color="green"><u>AGAAAACAGCT</u></font>atgggtttttggtaaggcacagaggtgat<br>gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgagacagtctcactgtgtcgcccaggctggagtgcagtgtcgcgatcttgact<br>ccctgcaacctccgcctcttgggttcaagcgattctcctatctcagcctcctgagtagctgggattaaaggcgcccaccaccatggccaactaatttttt<br>tgtatttttagtagagatggggttttgccatgttggccaggctggtgttgatctcaagtgatccacccgcctaggactcccaagtgttgggattacaggc<br>gtgagccactgcgcctgacatacctttctcatggctgcatatcaggggtacattctgtcc	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr15	21934133	21935021	2000374	0	+	AF417149; RIP_L1_chr15_021_01	NA	NA	LINE	L1	L1HS-Ta	ataaaattacctgaataattgaaagaattccatcgtaacatgatttcacctatatgttagacccatggattctataaacccacttagagcgttgtaccaa<br>tgtttaaattacatgctttacagaatccaattcaaatgtatttttatatgtcatcagaactgccatggaaagtggtaactatacatgcattgtggtttta<br>ggtaaattttcttttaaaaagaggaattgtatatgtcttcataggaagtgatccagggaaagcttgatttgttttagtaattcttttcttaatactttta<br>cactctttatcctactctcatttcttcacattcacaagaaagaggctttgtttacctttctgctcacttttgggtgatcatgatgtgtcaatg<font color="green"><u>AACTCAA<br></u></font><font color="red">GACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACA<br>CATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAG<br>TCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGT<br>GGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGA<br>CACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGG<br>CACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAAC<br>TATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTG<br>GGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCACTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACA<br>TGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACTCAA</u></font>aaagcacacag<br>cctgattttttaaatgtgccaaaggccttaactgatgcctctccaaagaagatattcagatagcaaataagcatacaaaaagatgctctaccttgtatgt<br>catttgggaaatgcaagttaaaacaacaatgtgataccactgttacacaattgatgaacctacattgacacatcatgatcacccaaaagagaaaaaatat<br>ttttaagatgcaaaggaaactggagatttttttaaggaaaatcaatgaaggaagaaacctttattggcttctccttttggtgacaaatgtattgttctct<br>tataagtagaaaactatactttaattatttcgtaatgtagtgattttaccagccacaactaacaggataacataggaaaggc	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr3	40056693	40057488	2000375	0	+	AF417150; RIP_L1_chr3_040_01	NA	NA	LINE	L1	L1HS-Ta	ttaaaacaataagaatgtattgtctccctcttctgtaggtcagaagtctacaatcaaggcgctggaagggccacactccctcccaagtctcttgggggag<br>aatctgcccatgcctccttcctagcttttggtggctgctggcaaaccttggtgttacttggattgtagccacagcactccaatctctgcctttgtcttca<br>cattgccttctctgtgtgtctcttaaaggacagttgtcattggatttagagctcactcatataatgcaggataactacatctcaaaattcttaatttata<br>agaccccttttccaaataaggtaatagttacagattccagtgatttagggcatggacatatcatttaagagagccaaccttcttttgagaagtgtctgtt<br><font color="green"><u></u></font><font color="red">CATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTT<br>AGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTC<br>AACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTA<br>TAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATA<br>GACTGGATTAAGAAAATGTGGCACATATACAACATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGG<br>AAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAAGTGAACAATGAGATCACATGGACACAG<br>GAAGGGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGG<br>GTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u></u></font>gaaa<br>aaaaaaaagaaaatattaccagcagaaaaaaaaaaaaaaaaaaaatcaaagcaatggcttgcaactctgagtaaaacaggaatccctgcatccatattga<br>taaacaagtgaataaataaatggtgagaaaggatgtttttctttgtatgtagaatgtcaaccaataaatgtagaaggcattatggagttaggaaatcatg<br>ttggtcaatcatgacagtaataactgggacaagactaatcaactgatactatataactggtgaatgaggaacaaaatactcatatagtctcaaagtatct<br>ccccacaaattacttgtaaattacaaagaggaaatcgtaaatttaaaatgaaatctggcagacaccaacctaagcggtgaacagagttaacaacat	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intron:MYRIP:NM:015460:2/17	
0	chr12	60053229	60053520	2000376	0	-	AF417151; RIP_L1_chr12_060_03	NA	NA	LINE	L1	L1HS-Ta	gcagacttaacgtcccaaatcagcaaattttgagttaaccaaaaaggagattatgctgagtggtcttacttaatcagatgaaccatctaaaagaggatca<br>agaattcagacactctcctgctgtctttgaagaactaagcctccccgagttctgcagtggcaaagaaataaattctgccggcaaccatgtagctttgaag<br>agaaccctgagcctcagatgagaccctagtccctactaacaccttgatctcagtgttgggagaacacaaggagagatctcattcaagctgtgcctggaga<br>ataagaaagtcctgaataattatgtccagagtgatgcattttatttggcccatatatgaattacttaatacttaaaatatattttatt<font color="green"><u>TTATAGAAAATA<br></u></font><font color="red">ATTGCCAACTAATATTTTTTCTGCATCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGT<br>GGTGGGGTGGGGGGAGGGGGGAGGGATAGCACTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACA<br>TATGTAACTAACTTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAATAATAATAATTAATAGAAATCCTTTAGAAA</font><font color="green"><u>TTATAGAA<br>AATA</u></font>tattactgtgaggatctagttggtattttcttttttcttttcttttttttttttttgagacagagtttcactctatcacccaggctggagtgcagt<br>ggtgtgatctcggctcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagcctcccaggtagcggggattacagattcatgctgccaca<br>cccagctaattttttgtattttagtagagatggggtttcactgtgttgcctaggctggtctcaaactcctgagctcaggcaatctgcccagctcggcctc<br>ccaaagtgctgagattgcaggcgtgagccaccgtacccggccaagttggtattttctatcatgatctggaaagctgacatgcattaaatgac	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr4	121089295	121095362	2000377	0	-	AF417152; RIP_L1_chr4_121_01	NA	NA	LINE	L1	L1HS-Ta	ccctctcagctcagttcaatcctgacattattcagaatgaaagactcaaactcaaaactcctgtgtgtttgacacaacagctaactgcattacctgaccc<br>tggagtggattctgtgctggaaaagaaacattattggggtcaaccaacaaaattggaacatgaatgggagattaaaacatgctaccaatgttaaatctac<br>tgaagttgataactgaatggtggttataaagagaataaccttattcttaggaaatgcataaatatttaataagaggctatggtgtatataactgtccttc<br>aaaaacaggtgtacacatacatatatatggagaaaaaaaaagagagacagagaaaaaaataaatgaaaaagcagtgtggtaaactgtt<font color="green"><u>AACAAATAAGTC<br></u></font><font color="red">GGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGCAAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGCTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCTGAAGCAGGGCGAGGCATTGCCTCACTT<br>GGGAAGTGCAAGGGGTCAGGGAGTTCCCTTTTCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCTGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACCGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCAATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAACCAGAGAGAAAGGTCGGGTTACACTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTTGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAACGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAACGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTCGAAACCAATGAGAACAAAGACACCACATACCAGAATCTCTGGGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAGGATCCATAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCAAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACATATCTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACTGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAGTAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTGAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGACATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGG<br>AAGACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTATCGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGTGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAATAAAAAAAAAAACCAAAACAAAACAAACAAACAAACAAAA</font><font color="green"><u>AACAAATAAGTC</u></font>aatctgggtaaatggcatat<br>gggtattcttagtgttattttgtacttttctgtatgcttacaattatttccaaataattaaaagcctttaaattgaaaatgagcaaacatttttaaaaag<br>tggaaataaccaaaattactctgtatgtaactagtgatgattgggaaaaaagtttaatttcagtaagaaatgtctgcttgtgaaaatcactttattacaa<br>caaaccattagagtttattgactttttttttttttttttttgagacagagttgcactctgtcacctaggctggagtgcagtggcatgatcacagttcact<br>gcaacctctgcctttcaggttcaagcaatcctcctgtctcagcctcctgaatagctgggactataggc	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr1	147575045	147575046	2000378	0	+	AF417154; RIP_L1_chr1_146_01	NA	NA	LINE	L1	L1HS-Ta	gaaattaaaccaggctgtgaataatgagtgatagtgaatgttctcctttaaccagttttggcaaagaggaacatggaagagcttgggaaggtatcaggat<br>ctgaagtgggggaacaggagagaagggaacaatctccaaggaaggaaaaagatgcacagagagaggaggctgagaataggcttcacccactgggagattt<br>tgcgtagggtcaggcttttctctgagaatttaaaatgtcttattgttacactacctgggacacagaaatggagctgcttcaagccattcctctaaatagc<br>tgcactcctagctgccgggtgccaggatgtttggttccaaatccaaaagcaatatttatgggggcaggattggcacgtggttgtatgcacagtgtgtgtg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAA</font><font color="green"><u>nnnnn</u></font>aaa<br>gatgtgtgtgaaagagtggaaagagtgtgtagggctgggtgactctgtagaaatagtttcccatccgacagtagctcctgacctaaggaagaccttcccc<br>atggaaatctgagcttagcattccaggacagtcttaatctaggcctaagaaggttgtagcacagagagaaggcaacatttaagtgtgaggtaacttatcc<br>tccttgtagagcacctcagaatgtccctgacttctcctactctcctgcccagagtgagttcctaggtagggtggctaggagaaggcactttcaaagaaca<br>agcactgagctggttctcactgtctggctgatctacatattgtcctgtcattttttatgaaccaggttctaacagaggaaccaaaaaatcctctggc	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr9	101655428	101657300	2000379	0	-	AF417155; RIP_L1_chr9_099_01	NA	NA	LINE	L1	L1HS-Ta	atggtacttttcagtctgaccgtctttgatttggtagagtatgtgtctgtctctctctccagtgagaccacagactctttgagggtaagggaatgtgtgt<br>ctggtgcacagttgatgctcaataaatatttactgaattaatctgaatcaaaataaggcaattttcaagaattcatacttttatcataacagtggtaggc<br>taaaaattattaattcagatttttctaatttgggagactttctgatactcacaattggcccattcattcaatgaatatttgtcatatgccagatacttgt<br>aaatgctaaagtaattttaaagataaataagactctccctgtccttaagaaccccacagtctagctggtaaagaaagacac<font color="green"><u>AAAGAAATTCCCTAACACA<br></u></font><font color="red">GCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATT<br>CACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAACTA<br>AAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCA<br>ATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATGTGGAACCAAAAAAGAGCCCGCATTGCCAAGTC<br>AATCCTAAGACAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAA<br>AACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAAT<br>GGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCTCTTCCTTACACCTTATACAAAAAT<br>CAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAG<br>GACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTA<br>CCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACA<br>AATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATG<br>AAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAG<br>GAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCG<br>ATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACA<br>TGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACA<br>TATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATC<br>GCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGA<br>CTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTA<br>TACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAATTCCCTAACACA</u></font>atgtgtat<br>attcagttgcagggatgcatgaacacttttatggattcttagcaagacagctggctcttcatggaagtgtgtaaaacaaataataacagtgaaggtttgt<br>ctaattttttttctgcatagtacatattagttcattcaatttttataagaaacctgaaagtagacatctttaaccctgtgagaaggaaggaaattgagat<br>tcagagagggtaaggaacttgtccaagattgcaaagacagcacatttcagggtgaagacctgaactcagatctccggtctctaaatcctgtggcctctcc<br>cctctcccaccatttttgtttttaactattttgccccgctaagtttgatatttagttttccttgcaatgtagc	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intron:NR4A3:NM:006981:7/8	
0	chr11	37767757	37767758	2000380	0	+	AF417156; RIP_L1_chr11_037_02	NA	NA	LINE	L1	L1HS-Ta	atcatttgtttttttcttgttgatttgtttgagcttattgtaaattctggatattagtcctttgtcagatgtacagattgtgaagattttctcccactct<br>gtgggttgtctgtttaatctgtggactgttccttttgccatgcaaaagctcttcagtttaattaagtcccagaaatctatctttgtttttattgcattta<br>cttttgggtacttggtcatgaaatctttgcctaagccaatgtctagaaggatttttccaatgttatcttctaaaatttttatagtttcacgttttaaagt<br>ccttagaccatcttgagctgatttttatataaagtgagagatgaggatccatttttattcttctgcatgtgtctagccaattatcccagcaccatttgtt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>nnnnn</u></font>ga<br>aaagggtgttctttcctcacttcatgtttttgtttggttttttgaagatctgttggctgtaagtatttgggtttatttctgggttctctattctgttcca<br>ttggtctatgtgcctatttttatgctagtaccatgctgttttggtgactatagacttacagtatagttagaaatgagtaatgtgatgctgccagatttgt<br>tctttttgctcagtcttactttggttaggcaggctctttattggttccatatgaattttagaattgttttttctaattctgtgaagaatgatggtggtat<br>tttgatggttatcacattgaatttgtaggttgcttttggcagtatgatcattttcacaatgttgattctacccacccatgagcatggggtgtgttttc	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr3	156111580	156115325	2000381	0	+	AF417157; RIP_L1_chr3_156_02	NA	NA	LINE	L1	L1HS-Ta	tcacagaatgagagaaaatatttgcaaactatacatctgacaagggattaataaccagaatatataagaagctcaaacaattcaataagaaaaaaattaa<br>taattcaattaaaaaatgcacaaaagatctgagcagacatttctcaaaagaagacatacaaatggcaaacagatatatgaaaagatgcgcaacatcattg<br>atcatcagagaaatgcaatcaaaagtacaatgacatattatcttactccagcttaagtggattttatcctaaagacaggcaataacaaattttggtgaga<br>atgtggagaaaagggaactcccaaacactgttggggcaaatgtaaattagtacacccactatggagtacagcatggaggttcctccaaagacttaaaata<br><font color="green"><u></u></font><font color="red">GACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACATGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAA<br>AACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAA<br>GGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGA<br>GACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAAT<br>TGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTA<br>TTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAAAAAACTATCTCTCAGACCACAGTGCAATCAAA<br>CTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAGACTGCTCCTAAATGACTACTGGGTACATAATGAAATGAAGG<br>CAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGC<br>ACTAAATGCCTACAAGAGAAAGCAGGAAGGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCT<br>AGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTG<br>AAAGGATCAACAAAATTGATAGACCGCAAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCAC<br>CACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGAC<br>ACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCA<br>AAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAA<br>AGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTGGACCAATATCC<br>TTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCATATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCC<br>CTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGC<br>AGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTAT<br>GACAAATCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTAT<br>TCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGC<br>AGACGACATGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAAT<br>GTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAAT<br>ACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAA<br>CATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATG<br>ACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATAGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTG<br>GAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAG<br>AACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGTATTCCCTATTTAATCAA<br>TGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAA<br>ACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCATGTCT<br>TCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCA<br>TCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGAC<br>TGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATAT<br>ACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATG<br>TCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACA<br>TGGATGAAATTGGAAACCATCATTCTTAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGAT<br>CACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACTTAATGCTAGATGA<br>CACATTAGTGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAA<br>AAAAACATATCCCAAATTCAAAAAAAAAAAAAAAAAAAAAAAAAGA</font><font color="green"><u></u></font>actaccatatgatccatcaatcccactgctaggtatatacccaaaagaaaggaa<br>atcaatataaagaagagatgtctgcacttccatgttcattatcaaactactcacaatagccaatatttggaaataacaaaggacaaatgttacttctcac<br>ttatttgtgggagctagaaaaattaaaacaattgaactcatgcagctagagagttttatgatggttaccagagactgggaagggtagtggagtcggggtg<br>gggtggagagtgaagatggttaatgggaacaaaaatgtggttagatggaatgaataagatctagtatttgatagcacgatagggtgactacagtcaacaa<br>taatttattatatattttgaaataactaaatgagtataattggata	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chrX	150339259	150339260	2000382	0	+	AF417159; RIP_L1_chrX_150_01	NA	NA	LINE	L1	L1HS-Ta	cccattttgtttttgtcttctttaatattgaatgcaaacttcacgttatttcacattttaaaatctttcatttcttctactattttcatacctaaaaacc<br>agacagtaatttgcactgttcacttattttttaaacaattgcatgcagctgtttcgattcatctttaaaagcttatttccacagcacataacaaagttaa<br>ttaaattgctttttgaagcaaggctgctttgtttccctctgcaagatgactcatgaggtctgactgagtctcatttatattcctccccagcaggtaattt<br>aaatgtgatttatacagaaaggaaaagaaagagaacaaaaaaagaaaaaagaaaacaaatgaagaaaattaccccttgctcacgtctttaacaagttatt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAGAAAAAAAGAAA<br>AATTAGGTTGACCATAGTGGCTCATGCCTGTAATCCCAGCACCTTGGGAGGCCAAGGCAGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAAAGACCAG<br>CCTGGCCAACATGGCGAAACCCTATCTCTACCAAAAGTACAAAAATTAG</font><font color="green"><u>nnnnn</u></font>ctgggtgtggagttagatgggagaaagctgccatatttctttcggt<br>gcccaaacattcttgtttacagcagcattgaaaactggcatctttgtgccccgagttgtataaatggtgcagggaaggcggattttggctcaatctgaag<br>aaacactgattctctgagatgcccggtggtggtaccagctggcttgggtggcattgagctccctaatgcatgggtgtgattctctgacagagaaggttgc<br>ttggtggtgttgggatggggaggataccctaaaggactctttatttatttagcaatgcatgggtcctggcatattgaaggaataggaaggagcccagcca<br>gcctgaatggtgggagactaggggagggtaaagttgggtagtaaggtgtggcag	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr9	93098301	93098302	2000383	0	-	AF417160; RIP_L1_chr9_091_01	NA	NA	LINE	L1	L1HS-Ta	ccatgaaaacagacatgaaaagaggaaccctgtccacctgtcagaatagtaaaactatttgtcagaaggtaactaaagacttggtcttgaaaagttgcca<br>tatctgatatgacctattaagctctttggtctgggggactatattcaggcaactgaagaatttgggcttgtcagatactgacaagtctgctgatcctgaa<br>taattaatagatctatgcctccaaatatgtcttggcaatattgggtctaataatggagttacagtcctggtcttgtgaatcaaaaattaattcactgcca<br>agcagtttttaacagaaaatgttgtgggactctcctaatacatgtcatttagagtgcttacttatttccataacaatgccttttaagtgattttttttaa<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAATAAATAAAAAATA<br>AAACCCCCTAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>nnnnn</u></font>gaatttgtgatatcaatttaattagtaaacaatattttagtatatctcataactttttcaa<br>gttgtcatatttgaatgtgatgatatggatgatacttaattttctttctttcgttttagcttcctctgcaaaaatgggcctggttgaaacaaaattggcg<br>attattcctggtggaggtatgagtagttcacgcccattcctcaaatccttgatttggtcctagaaacagggcataaggcaaaatcatgttaattggaaag<br>gcaacattttgcgtaaagagacaatggcatattgtttgcatccctagcaaagtccccattcaagttacaggcatacctaacagattttccccaccgcaat<br>gaaacaaatactgcgatagagcaagccacacaaattttt	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intron:AUH:NM:001698:5/10	
0	chr3	156111571	156115320	2000384	0	+	AF417161; RIP_L1_chr3_156_03	NA	NA	LINE	L1	L1HS-Ta	agaaacaactcacagaatgagagaaaatatttgcaaactatacatctgacaagggattaataaccagaatatataagaagctcaaacaattcaataagaa<br>aaaaattaataattcaattaaaaaatgcacaaaagatctgagcagacatttctcaaaagaagacatacaaatggcaaacagatatatgaaaagatgcgca<br>acatcattgatcatcagagaaatgcaatcaaaagtacaatgacatattatcttactccagcttaagtggattttatcctaaagacaggcaataacaaatt<br>ttggtgagaatgtggagaaaagggaactcccaaacactgttggggcaaatgtaaattagtacacccactatggagtacagcatggaggttcctcc<font color="green"><u>AAAGA<br></u></font><font color="red">CTTAAAATAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACATGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAG<br>CCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACAT<br>AATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGAC<br>CTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATA<br>CCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACA<br>CCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAAAAAACTATCTCTCAGACCACAGT<br>GCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAGACTGCTCCTAAATGACTACTGGGTACATAATG<br>AAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAA<br>ATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAGGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACAT<br>TCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCT<br>GGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCAAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGG<br>GGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACA<br>TTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTT<br>TACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATC<br>AATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTGGA<br>CCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCATATCAAAAAGCTTATCCACCATGATCAAGTGG<br>GCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTC<br>AATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGA<br>GCTATCTATGACAAATCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCAC<br>CGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTC<br>CCTGTTTGCAGACGACATGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATAC<br>AAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGA<br>GAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAA<br>ATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAG<br>CTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATAGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGA<br>ACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCA<br>ATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGTATTCCCTA<br>TTTAATCAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTA<br>AAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAAC<br>ACCATGTCTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTAT<br>GAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGT<br>TGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTAC<br>TGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCA<br>ACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTT<br>GTAGGGACATGGATGAAATTGGAAACCATCATTCTTAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAA<br>CAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACTTAAT<br>GCTAGATGACACATTAGTGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTA<br>TAATAAAAAAAAAACATATCCCAAATTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGA</u></font>actaccatatgatccatcaatcccactgctaggtatatacccaaa<br>agaaaggaaatcaatataaagaagagatgtctgcacttccatgttcattatcaaactactcacaatagccaatatttggaaataacaaaggacaaatgtt<br>acttctcacttatttgtgggagctagaaaaattaaaacaattgaactcatgcagctagagagttttatgatggttaccagagactgggaagggtagtgga<br>gtcggggtggggtggagagtgaagatggttaatgggaacaaaaatgtggttagatggaatgaataagatctagtatttgatagcacgatagggtgactac<br>agtcaacaataatttattatatattttgaaataactaaatgagtataatt	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chrX	136972893	136974153	2000385	0	+	AF417163; RIP_L1_chrX_136_01	NA	NA	LINE	L1	L1HS-Ta	tctctgtttgtctgttgttggtgtataagaatgcttgtgatttttgtacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggag<br>attttgggctgagacgatggggttttctagataaacaatcatgtcgtctgcaaacagggacaatttgacttcctcttttcctaattgaataccctttatt<br>tccttctcctgcctgattgccctggccagaacttccaacactatgttgaataggagcggtgagagagggcatccctgtcttgtgccagttttcaaaggga<br>atgcttccagtttttgcccattcagtatgatattggctgtgggtttgtcatagatagctcttattattttgaaatatgtcccatcaatacctaatttatt<br><font color="green"><u></u></font><font color="red">GATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAA<br>GATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCAT<br>GTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGA<br>GTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACA<br>AGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATG<br>CTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAAC<br>AGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTCAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCA<br>GGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACG<br>TATGTTTATTGTGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGACACATATACACC<br>ATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCACAAGAAC<br>AAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTG<br>GGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATG<br>TAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u></u></font>aaaaaaaaaaaccagaccttctgacttctcatcttgggt<br>tttctttgtgttgtctgtatatagcacatggatgaaaaccaagcccttggctagctagtgtccactgcttccttttagcatcctccagtgaggtgggtgg<br>aagtggtgttgattatacttccagaagaatattgggactgaagtttcttaacaagggtctactttatcagtctccctcctttctaggcttccagctccta<br>ctgaagggcatctcacacccttcacccacactgaatttctcctccttggcgggatgtagttcagttctttctctttgatcgccttgtcatctaaatagca<br>ctgctgccatcacctttgccctggttcccttctcttctatgcatgtgaaggaaaagttaga	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr6	65533742	65533743	2000386	0	-	AF417164; RIP_L1_chr6_065_01	NA	NA	LINE	L1	L1HS-Ta	gttctcattcatatatgaatgcaaaataaaaatcataaaggtaaaaaatagaaaaagaaaaatagaacaaagaatactagaggctggaaagagtatgggg<br>aaagggaagatggggagagatttggtaaaggatacaaaattacagctagaaaagaggaataagttttagcattctgtagcactgcagggtgactataatt<br>agcagtaatatcttatatactttcaactagctagaggaggatttaaaatattccaatacaaagacataataaatgtacggtatgatgaatatgctaatta<br>ccctgatgtgatcactatatattacatacatcaaaacatcactagtacacaataaatatgtacaattagtacatccaattaaaaattaaattcacttatg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>nnnnn</u></font>aaaactaatgtaaaaaggaaaaaatacaattttacctttatttgattgtagagcaaaaaaatatatagctcatgtgaatataaagt<br>gaggttaaccccagtgatatcatcacatataaaatttcaaactgtttgatttgacttcagaactttcaatgatctgtagacttaaaataattgacttctt<br>ttcagtttttcttttactgtactgaacctatgctttttcactataaacaaattattcttttgctctccttagcatcctttaaggtaagaagtaacaaatt<br>attgtcacaaaataataaaatactcaaattctgttcaaatgattaagtacatattagacttagaaaataatgaatacatttcactctaagtttgtctgtg<br>aaatcatctcgtat	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intron:EYS:NM:001142800:22/43	
0	chr6	19873105	19879163	2000387	0	+	AL022726; RIP_L1_chr6_019_01;AC206603	AAAGTGCTGGGAGGTTTACT;NA	TCCTTCCATTAATCATGATT;NA	LINE	L1	Ta-0	ctcactgacaatgcacctggttacccaagagctctgagggagatgcacaggagatgaacattgtttccatgcctgctaatacagcattcatcctgtagcc<br>catgtatcaaggcgtcatttcgactttcaaatcttattatgtaagaaatacatcttgtaaagccatagacagtgattcccctgatggatctaggcaaact<br>acatggaaaaccttctggaaagggatcaccattctagatgccattaagaacaaccatggccgggcacagtggctcacccctgtaatcccagcactttggg<br>aggctgtggtggaggataacttgagcccaggagttgagactaaaaccagcctgagcaacatggcaaaaccctgtctccagg<font color="green"><u>AGAAAAAAAAACTAACTGG<br></u></font><font color="red">AGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTT<br>CATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGTCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGC<br>AAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGG<br>CTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCA<br>AACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCC<br>ACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTG<br>TCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCT<br>GACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTC<br>TGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGAT<br>GGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCACCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGAACAAAGCTGG<br>ATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAA<br>ACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACG<br>TGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTT<br>AGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATAGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATG<br>TGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACA<br>GAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCC<br>AGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATAT<br>TCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCA<br>AATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACTGGTACCAGCCGCTGCAAAAT<br>CATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACA<br>TAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTAT<br>TCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTT<br>GCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGG<br>AGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATT<br>AATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAA<br>GCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAG<br>TTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAA<br>TCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTT<br>GAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAA<br>AGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAAC<br>TAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGAT<br>AGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATAC<br>AAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCAACACATACACTCTCCCAAGACT<br>AAACCAGGAAGAAGCTGAATCTCTGACTAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGAT<br>GGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACT<br>CATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAA<br>AATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTC<br>AATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAA<br>TTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATAT<br>CATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTT<br>CTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATC<br>TAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATT<br>CTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAATCCAACTTACA<br>AGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAG<br>GAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGA<br>AAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAACCAAAAGAACAAAGCTGGAGGCATCACACTACCTGAC<br>TTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAA<br>TGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCT<br>AGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATA<br>AAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAACCAAAA<br>TTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGC<br>AACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAG<br>GACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAA<br>CCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTT<br>ACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATC<br>CCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTT<br>GGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCAT<br>ATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGG<br>AATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATAT<br>ACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACT<br>GAGAGTATAATAAAAAAAAAAAAAAATAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAAAAAACTAACTGG</u></font>gtatggtggcatgtgcctgtag<br>tcccagtgacttggaaggctgaggtgggaggatcgactgagcccgggatttcaaggctggctgcagtgagccataatcatgcaactgcattccaacctgg<br>gcaacagagtgagaccctgtctctaaaaaaaaaaaaaaaaaaaaaaaaaaaagaatcatgattaatggaaggaagtcaaatatcaccattaacaggagtt<br>tggaagaagttgattccaaacctaatgggtgactttgaggggttctaggcttcaggggaggaaagaatcacagatgtggtaaaaataacaagagaactag<br>agttagaagtggagtctgggctgggcgcggtagctcacgcctgtaatcccagcactttg	UCSC;UCSC	<UL><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr4	108496149	108497226	2000388	0	+	AC003100; RIP_L1_chr4_108_02	TTTAGTAGATTTGCAGGTCT	CTCTCTGAGTTCCAATTATT	LINE	L1	Ta-1	attttttgtttggttatttacatttcgggtttggtattgttttgtttttgctgctgaggatcaattatgctctttcaatatcagggttcatgtatttctt<br>taattctgaaaactccccaactattatctcttagaatactttttctcccttttatcctttattttctcttctggaatatctcattctatctctttatctt<br>ctttatcttttaacattttttataattttttaatcattttatctctctctgctagattctgagaggtttactcaactccatctttcagttctctgattct<br>cattttaattgacattaatatgctattcatcccatccaattaacttatttttgtgattatatttttatatctagaagttcaatttggttctattt<font color="green"><u>TCAAA<br></u></font><font color="red">ACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTG<br>CACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATC<br>TACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATG<br>CAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGC<br>AATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTG<br>TGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCAT<br>GCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGAT<br>TAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATC<br>ATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGA<br>ATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCA<br>CCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAA</font><font color="green"><u>TAAAA</u></font>taaaaaataaaaaataaataaa<br>aaaaataaataaaaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtggaactgtaaactagttcaa<br>ccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggattata<br>aatcatgctgctatgaagacacatgcacatgtatgtttactgtggcactattcacaatagcaaagacttggaaccgacccaaatgtccaacaatgagaga<br>ctggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcatgtcc	UCSC	<UL><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chrX	146542945	146549015	2000389	0	+	AC007538; RIP_L1_chrX_146_02	TGTAAACCTAGCAAGAAGCT	AAGTTATAGCACATATTCCC	LINE	L1	Ta-1	gatccttgtaaaatagaatacatgctcaacaaaatgctaaacctgtgcaaggaactacaatgaatatcgaacaaaccatgcttcttttacaaaatagttt<br>tctcacaaaatgtcaatgtaaacctagcaagaagctattgtgtaatatgtttctatgtatactcacatggagtattttcaattaatatgacttactctta<br>atttactacctcttgtaccaagttggcatacaatatatttttccaagataaattaccagtgagtggaaccaattgtcacatatgagtcccggagctgagg<br>aaaagtagaatttaacaaggccactgtagaaaagattgctgcataactgttcaaaatcatttaagtataaaaagactttatgcttat<font color="green"><u>GAAAAAAATTGTC<br></u></font><font color="red">GGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGAGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCTGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGACAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAAGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGTGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTATAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTGTCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAAGTGAAGGAAATAGAAACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAGGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATCTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCCCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAA<br>ATTTTCGCATCCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCGATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGGGGAGGGGGAAGGGATAGTATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAAGAGTATAATAAAAAAAATAAAATAAAATAAAATAAAAATAAATGAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAAAAATCGTC</u></font>agcagtagattgcttg<br>attgctttaacagaagccaaaggatttggtaatcccatcttgtggtgacagaattgttcaggagctcaggcagaggtagtgagggtgaccagagatgaaa<br>gggaaaagcgatggggcaaagagtagctgaggggaagagacaggatggattttgtaagctgaatgcagaccagcagctgcaattttctatcatttgatca<br>ggcccatttgctgagcagagaaatacagggtgggtggttataccactgccacattatccttttcgaattgagtctaaattgattcaggttttgagaaggc<br>ccaggaagcactgatgactgctgtcgcaggaaaaaaaacagccttcaaataagcaaagggcatcgtgaagt	UCSC	<UL><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr11	5203631	5203632	2000390	0	-	L1b-thal; RIP_L1_chr11_005_01	CCCAACCATAAAATAAAAGCAGAGAGG	GAATAACAGTGATAATTTCTGGGTTAAGGCAA	LINE	L1	L1M2	attcataatctccctactttattttcttttatttttaattgatacataatcattatacatatttatgggttaaagtgtaatgttttaatatgtgtacaca<br>tattgaccaaatcagggtaattttgcatttgtaattttaaaaaatgctttcttcttttaatatacttttttgtttatcttatttctaatactttccctaa<br>tctctttctttcagggcaataatgatacaatgtatcatgcctctttgcaccattctaaagaataacagtgataatttctgggttaaggcaatagcaatat<br>ctctgcatataaatatttctgcatataaattgtaactgatgtaagaggtttcatattgctaatagcagctacaatccagctaccatt<font color="green"><u>CTGCTTTTATTTT<br></u></font><font color="red">AGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATACTTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCAGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAATCACTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACGAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGAGCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCTACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGACTTAAATGTTAGACCTAA<br>AACCATAAAAACCCTAGAGGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>ACCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTTTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTGAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CTGCTTTTATTTT</u></font>atggttgggataaggctggattattctgagtccaagctaggc<br>ccttttgctaatcatgttcatacctcttatcttcctcccacagctcctgggcaacgtgctggtctgtgtgctggcccatcactttggcaaagaattcacc<br>ccaccagtgcaggctgcctatcagaaagtggtggctggtgtggctaatgccctggcccacaagtatcactaagctcgctttcttgctgtccaatttctat<br>taaaggttcctttgttccctaagtccaactactaaactgggggatattatgaagggccttgagcatctggattctgcctaataaaaaacatttattttca<br>ttgcaatgatgtatttaaattatttctgaatattttactaaaaag	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Kimberland ML, Divoky V, Prchal J, Schwahn U, Berger W, Kazazian HH Jr. Full-length human L1 insertions retain the capacity for high frequencyretrotransposition in cultured cells. Hum Mol Genet. 1999 Aug;8(8):1557-60.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10401005">PMID:10401005</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	63	NA	NA	b-Globin related	intron:HBB:NM:000518:2/3	
0	chrX	153812212	153812213	2000391	0	-	JH-27; RIP_L1_chrX_153_01	NA	NA	LINE	L1	NA	gttgaagaaacttgatttcaaagtttctagtacatcaaataatctgatttcaacaattccatcagacaatttggcagcaggtactgataatacaagttcc<br>ttaggacccccaagtatgccagttcattatgatagtcaattagataccactctatttggcaaaaagtcatctccccttactgagtctggtggacctctga<br>gcttgagtgaagaaaataatgattcaaagttgttagaatcaggtttaatgaatagccaagaaagttcatggggaaaaaatgtatcgtcaacagagagtgg<br>taggttatttaaagggaaaagagctcatggacctgctttgttgactaaagataatgccttattcaaagttagcatctcttt<font color="green"><u>GTTAAAGACAAACAAAACT<br></u></font><font color="red">AGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGG<br>GTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAANNNNNNNNNN</font><font color="green"><u>GTTA<br>AAGACAAACAAAACT</u></font>tccaataattcagcaactaatagaaagactcacattgatggcccatcattattaattgagaatagtccatcagtctggcaaaata<br>tattagaaagtgacactgagtttaaaaaagtgacacctttgattcatgacagaatgcttatggacaaaaatgctacagctttgaggctaaatcatatgtc<br>aaataaaactacttcatcaaaaaacatggaaatggtccaacagaaaaaagagggccccattccaccagatgcacaaaatccagatatgtcgttctttaag<br>atgctattcttgccagaatcagcaaggtggatacaaaggactcatggaaagaactctctgaactctgggcaaggccccagtccaaagcaattagta	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Kazazian HH Jr, Wong C, Youssoufian H, Scott AF, Phillips DG, Antonarakis SE. Haemophilia A resulting from de novo insertion of L1 sequences represents anovel mechanism for mutation in man. Nature. 1988 Mar 10;332(6160):164-6.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2831458">PMID:2831458</a>.</LI></UL>	E:Insertion-specific detection:PCR	incomplete repeat sequence	NA	NA	NA	Haemophilia A	exon:CDS:F8:NM_000132:14/26	
0	chrX	31803311	31803312	2000392	0	-	JH-1001; RIP_L1_chrX_031_01	NA	NA	LINE	L1	L1HS	gcagttggctatgcctttgtgtaaggtgtgtgttttgaaattccaaaaaggtattagtttctttaaagcaaagaatttttgtagcaggttaatgaataat<br>tttgaatacattggttaaatcccaacatgtaatatatgtaaataatcaatattatgctgctaaaataacacaaatcagtaagattctgtaatatttcatg<br>ataaataacttttgaaaatatatttttaaacattttggcttatgccttgagaattatttacctttttaaaatgtattttcctttcaggtttccagagctt<br>tacctgagaaacaaggagaaattgaagctcaaataaaagaccttgggcagcttgaaaaaaagcttgaagaccttgaagagcagttaaa<font color="green"><u>TCATCTGCTGCT<br></u></font><font color="red">TGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGATGGTTTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCATA<br>ATATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTTTTTGCTATTGTGAATAGTGCCGCA<br>ATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAGTCCTTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTT<br>CTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCGCATCCTCT<br>CCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGT<br>GATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTG<br>TTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTTG<br>CCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGT<br>GTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTT<br>TAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGAGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAA<br>TAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGTGGCATTATTTCTGAGGGCTCTGTTCTGTTCCAT<br>TGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCTCACTCATAGGTGGGAATTGAACAAT<br>GAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGGTAGCATTGGGAGATATACCTAATGCTA<br>GATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAAT<br>TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATCACACCACTGCACTCCAGCCTGGGTGTCAAAGCGAGACCCTGTCTCAGGAAAAAAAAAA<br>AAAAAAAAAAAAAAGGCTTAATTGATTGAACCAGATTCGAGAAAACAGTGCTAAATTATAATTTTCTCAATACTGTAAATATTTTTCAATCTTCAGCTTC<br>ATTAACTTCTATAATTGAAATTATCCCAATTATTACCTGACATGTACTAAAATTCCCTAAAATGGATCTTGAGTAACATTTTCACAGTACGATAATTTTT<br>CTCTCTGTATATATTTATATAGTCACATATATGCACATACATTATACAAGCATTACTTTTCTATAACTGTAAGGTCAGAATTTGAAGTTGTGTTTTCTTT<br>ATCTTTTTATTTCCAATACTTGGCATCAAGTTGATATTCATTAGAAGTAAAGGAGGAAGGAAATGAATAATCTTCAGATACTAAGAACATTACACTTAAA<br>TTATTATTAAATCTAATTTGCATTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCATCTGCTGCT</u></font>gtggttatctcctattagga<br>atcagttggaaatttataaccaaccaaaccaagaaggaccatttgacgttaaggtagggaactttttgctttaaatatttttgtcttttttaagaaaaat<br>ggcaatatcactgaattttctcatttggtatcattattaaagacaaaatattacttgttaaagtgtggtaaggaagactttattcaggataaccacaata<br>ggcacagggaccactgcaatggagtattacaggaggttggatagagagagattgggctcaactctaaatacagcacagtggaagtaggaatttatagcca<br>aggagcagtgtaggagtcagtagatggaaaattattaagaggaaacatcaggggtaagtgggattctg	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Holmes SE, Dombroski BA, Krebs CM, Boehm CD, Kazazian HH Jr. A new retrotransposable human L1 element from the LRE2 locus on chromosome 1qproduces a chimaeric insertion. Nat Genet. 1994 Jun;7(2):143-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7920631">PMID:7920631</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	Dystrophin related	exon:CDS:DMD:NM_004010:48/79	
0	chrX	153811608	153811609	2000393	0	-	JH-28; RIP_L1_chrX_153_02	NA	NA	LINE	L1	NA	caaaaaacatggaaatggtccaacagaaaaaagagggccccattccaccagatgcacaaaatccagatatgtcgttctttaagatgctattcttgccaga<br>atcagcaaggtggatacaaaggactcatggaaagaactctctgaactctgggcaaggccccagtccaaagcaattagtatccttaggaccagaaaaatct<br>gtggaaggtcagaatttcttgtctgagaaaaacaaagtggtagtaggaaagggtgaatttacaaaggacgtaggactcaaagagatggtttttccaagca<br>gcagaaacctatttcttactaacttggataatttacatgaaaataatacacacaatcaagaaaaaaaaattcaggaagaaata<font color="green"><u>GAAAAGAAGGAAACATT<br></u></font><font color="red">AGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGG<br>GTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAANNNNNNNNNN</font><font color="green"><u>GAAA<br>AGAAGGAAACATT</u></font>aatccaagagaatgtagttttgcctcagatacatacagtgactggcactaagaatttcatgaagaaccttttcttactgagcactag<br>gcaaaatgtagaaggttcatatgacggggcatatgctccagtacttcaagattttaggtcattaaatgattcaacaaatagaacaaagaaacacacagct<br>catttctcaaaaaaaggggaggaagaaaacttggaaggcttgggaaatcaaaccaagcaaattgtagagaaatatgcatgcaccacaaggatatctccta<br>atacaagccagcagaattttgtcacgcaacgtagtaagagagctttgaaacaattcagactcccactagaagaaacagaacttgaaaaaaggataa	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Kazazian HH Jr, Wong C, Youssoufian H, Scott AF, Phillips DG, Antonarakis SE. Haemophilia A resulting from de novo insertion of L1 sequences represents anovel mechanism for mutation in man. Nature. 1988 Mar 10;332(6160):164-6.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2831458">PMID:2831458</a>.</LI></UL>	E:Insertion-specific detection:PCR	incomplete repeat sequence	NA	NA	NA	Haemophilia A	exon:CDS:F8:NM_000132:14/26	
0	chr9	107420038	107420039	2000394	0	+	L1FCMD; RIP_L1_chr9_105_01	GGTGAAGCATCTTAAGTCTAATCC	TTCCTAGGTCAACATCTTTGC	LINE	L1	NA	cttatcagcaacttagtgttattaaagctaatggtttattcagaaactaaaatatatcatgaaagtttttgaggaagctgagagtgctcagacagtaaaa<br>atagatacatagatagatagaaggttcaggtgactgctcaaacaaagtcatttagtttgaggtttaatttttaaaaataattttggtgaagcatcttaag<br>tctaatcctgtgaaataaaatccattctatagccccagccactcaagaggccaaggcaggaggatcacttgagccaggagtttgcgtacagcctgggcaa<br>tatagtgagactctgtctctttaaaaaaaaagaaaaaaaatccttgttacaaatataatttgttataataactaattttttccaaacctaaa<font color="green"><u>ttttgtta<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>ttttgtta</u></font>aaaaaatttaatcttctttttaggatggtatcgacaatgcaacattattccttatagcaaagatgttgacctaggaattttt<br>atacaagattacaaatctgatattattttagcatttcaggatgcaggacttccgctcaaacacaaatttgggaaggtcagtaacaaaagtcggcttcatt<br>tcataagtaacatatctcacttgtaaagtttacattaagcaactcagatatggttaagaatgctacatacataattttatcactcagtattgactaggat<br>gagttcagcagaagcctgttaccacttgtaatttctgcactgtctaggcaaaagcaagaaaatctggctttctactgggttggtgcaaaagtaattgtgg<br>tttttgccat	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Kondo-Iida E, Kobayashi K, Watanabe M, Sasaki J, Kumagai T, Koide H, Saito K,Osawa M, Nakamura Y, Toda T. Novel mutations and genotype-phenotype relationships in 107 families withFukuyama-type congenital muscular dystrophy (FCMD). Hum Mol Genet. 1999 Nov;8(12):2303-9.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10545611">PMID:10545611</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	NA	NA	NA	Fukutin related	intron:FKTN:NM:006731:7/10	
0	chr5	112203766	112203767	2000395	0	+	APC; RIP_L1_chr5_112_01	NA	NA	LINE	L1	L1HS	acttgatagttttgagagtcgttcgattgccagctccgttcagagtgaaccatgcagtggaatggtaagtggcattataagccccagtgatcttccagat<br>agccctggacaaaccatgccaccaagcagaagtaaaacacctccaccacctcctcaaacagctcaaaccaagcgagaagtacctaaaaataaagcaccta<br>ctgctgaaaagagagagagtggacctaagcaagctgcagtaaatgctgcagttcagagggtccaggttcttccagatgctgatactttattacattttgc<br>cacggaaagtactccagatggattttcttgttcatccagcctgagtgctctgagcctcgatgagccatttatacagaaagatgtggaattaa<font color="green"><u>GAATAATG<br></u></font><font color="red">TGCATGTGTCTTTATAGCAGCATGATTTATACTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAG<br>GAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAA<br>TGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCA<br>CTTATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGC<br>ATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAATAACAATAAATGAGATAAAATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAATAATG</u></font>cctccagttcaggaaaatgacaatgggaatgaaacagaatca<br>gagcagcctaaagaatcaaatgaaaaccaagagaaagaggcagaaaaaactattgattctgaaaaggacctattagatgattcagatgatgatgatattg<br>aaatactagaagaatgtattatttctgccatgccaacaaagtcatcacgtaaagcaaaaaagccagcccagactgcttcaaaattacctccacctgtggc<br>aaggaaaccaagtcagctgcctgtgtacaaacttctaccatcacaaaacaggttgcaaccccaaaagcatgttagttttacaccgggggatgatatgcca<br>cgggtgtattgtgttgaagggacacctataaacttttccacagctacatc	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Miki Y, Nishisho I, Horii A, Miyoshi Y, Utsunomiya J, Kinzler KW, Vogelstein B,Nakamura Y. Disruption of the APC gene by a retrotransposal insertion of L1 sequence in acolon cancer. Cancer Res. 1992 Feb 1;52(3):643-5.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1310068">PMID:1310068</a>.</LI></UL>	E:Library screening:TE-specific hybridization	NA	NA	NA	NA	Colon cancer	exon:CDS:APC:NM_000038:16/16	
0	chrX	32144958	32144959	2000396	0	+	Dystrophin; RIP_L1_chrX_031_02	GCTAAGGACTTTGAAGATCT	CTTGACTTGCTCAAGCTTTTC	LINE	L1	L1PA2	tcatgatggatatttctagcaacttcattttagctaagtatgccacaagttctccttctggaaaggttccaacataaagccgaaatacacactgccccaa<br>agccacaaaacaccttgctgttacgatgcttccctctgtcacagattcaattatattttgcagtttatcagataaaccagctccgtccaggcaaactctc<br>tcatcctgacacaaaaagtccatagcaccgtgctctaatattatcattatgataattttctttctagtaatataatgatgacaacaacagtcaaaagtaa<br>tttccatcacccttcagaacctgatctttaagaagttaaagagtccagatgtgctgaagataaatacaatttcgaaaaaacaaatcaaagacttacctta<br><font color="green"><u></u></font><font color="red">AGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCAATCCCATTACTGGGTATATACCCAAAG<br>GACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAA<br>TGATAGACTGGATAAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAA<br>ATTGGAAACCATCATTCTTAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGA<br>CACAGGAAGGGGAATATCACACTCTGGGGACTGTCGTGGGGTAGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACAAGTTAG<br>TGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u></u></font>agataccatttgtatttagcatgttcccaattctcaggaatttgtgtctttctgagaaactgttcagcttctgttagccactgattaaatatctt<br>tatatcataatgaaaacgccgccatttctcaacagatctgtcaaatcgcctgcaggtaaaagcatatggatcaagaaaaatagatggattatgtaaaaca<br>gattatagagatatagcgtatattttttggttatactgacaaagatatcactctgatagtttcctgcatttgcagagtttagtttcaagtaacaaataaa<br>aattaatatacacacctagcatgtacacacaacattttaaaaaaatactcaatataaaagctgattttaaatggaaggttgcaatttttccctttaaaat<br>gaata	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Insertion of a 5' truncated L1 element into the 3' end of exon 44 of thedystrophin gene resulted in skipping of the exon during splicing in a case ofDuchenne muscular dystrophy. Comment in:    J Clin Invest. 1993 May;91(5):1859-60. J Clin Invest. 1993 May;91(5):1862-7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8387534">PMID:8387534</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	Dystrophin related	exon:CDS:DMD:NM_004010:44/79	
0	chrX	46582228	46582229	2000397	0	+	L1RP; RIP_L1_chrX_046_01	CGTATATGGGACCGATTCTCATCTCTTCCG	GCAAAAAGCTTTCAATTTCCTAACTCTGAC	LINE	L1	L1M2	cccccgggagctttctctgactccgaaccctgccttgctctgacttcctgttggagatgatcgattcgagagagggaaagagccgagaacgccctgaatc<br>tcaaatcacctcgtttcacccaccggcagcgtcaagcggggttttgtccagtcgtcgagttacgtatatgggaccgattctcatctcttccggggcttaa<br>tgttctgtggctgttttctcttttgtctgccctccccggcaaatctctttggtgcctcatgatatatttcactgctgaattttctcaattaccaagtgga<br>ctgtttaatgtacagctttactccccctcctcttccagttatccgaaagaaataatgaatatcgcatcagtcttggaatgtgtatt<font color="green"><u>AAGACTGTAAGGTG<br></u></font><font color="red">GGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCAGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCAAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAC<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAAT</font><font color="green"><u>AAGACTGTAAGGTG</u></font>aaaataagcggcataaaccaggcagtattttactgctggtttaaatgaatgaaaacgcccttatttt<br>tatttttgtatatagccagaaacgaaaaacctttgaaaacctccattagtcttacacaaaacacactcggtcatacatttcataatagttcctctttcta<br>catagttctccatttgtgcttactaaactactttgatggacttatcaattatttctcccaaacaaaatgagagatttttcaaatgggtattatgaacagt<br>taactctttgcttaaggcaacatatctttacccaagattactttataataaatgtattaacgttttggaatcacagacctttctgcatgatttccaatcc<br>ccagcagaatgtattcagg	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Positional cloning of the gene for X-linked retinitis pigmentosa 2. Comment in:    Nat Genet. 1998 Aug;19(4):311-3. Nat Genet. 1998 Aug;19(4):327-32.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9697692">PMID:9697692</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	RP2 related	intron:RP2:NM:006915:1/5	
0	chrX	138458247	138458248	2000398	0	+	L1FIX; RIP_L1_chrX_138_01	NA	NA	LINE	L1	L1PB4	tacactaaaattgtgtgtattttttgaatatatgttatacattaataaatagggtttttaaacctgtagttcataatttagtgaaagtagaatatccaaa<br>catttagttttaaaccaatcaattatagtgctaccatcatttttatgcattattgagaagtttattttacctttctttccactcttatttcaaggctcca<br>aaatttctctccccaacgtatattgggggcaacatgaatgcccccaatgtatatttgacccatacatgagtcagtagttccatgtactttttagaaatgc<br>atgttaaatgatgctgttactgtctattttgcttcttttagatgtaacatgtaacattaagaatggcagatgcgagcagttttgt<font color="green"><u>AAAAATAGTGCTGAT<br></u></font><font color="red">GATACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGT<br>GGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAA<br>ACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATACACACTCT<br>GGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCAC<br>ATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTCTAAT</font><font color="green"><u>AAAAATAGTGCTGAT</u></font>aacaaggtggtttgctcctgtac<br>tgagggatatcgacttgcagaaaaccagaagtcctgtgaaccagcaggtcataatctgaataagattttttaaagaaaatctgtatctgaaacttcagca<br>ttttaacaaacctacataattttaattcctacttgaatctgcttccttttgaaatcatagaaaatatcagtagcttgaattagaccaattaattttctag<br>attgcatcatattttaaatataaactatgtaatcatctacaacctgaattctttctgtgtccaatttgtccaatttttttctctaacatttatatcacaa<br>agcaattaatttgtgtgatttctgcatatgtatttgtaattcatcaagtcaaatcaatgtag	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Li X, Scaringe WA, Hill KA, Roberts S, Mengos A, Careri D, Pinto MT, Kasper CK,Sommer SS. Frequency of recent retrotransposition events in the human factor IX gene. Hum Mutat. 2001 Jun;17(6):511-9.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11385709">PMID:11385709</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	severe hemophilia B	exon:CDS:F9:NM_000133:5/8	
0	chrX	37536178	37536179	2000399	0	+	CYBB; RIP_L1_chrX_037_01	GTTAACAATTACTATTCCATTCTTTCCCCC	CTATGAATAGAGGGAACTCCCTGGTTCCAAG	LINE	L1	L1MA8	tgactatgaggtatgtgatgttaatttctacatcctttgtttaatgagtaaattaatcagaactagaaactatgtagctagatatgttttttgtacaagt<br>ttatatttttatacagttaagcaatggattccagaggagactttatgtcaccagtatgagaacagaaaacataccagttaagccagccatgtcacttact<br>ggctgtttgacctgaggaagatgactgcatctctctgaacctcagtttcctcatttatcaaatagatataatgatacagtttgcagggtggtcatgaaaa<br>ttaaatgagataatatgtatcaaatgtttgacacatagcaagctttcctgttaacaattactattccattctttcccccttaatccaaagtgctgctcaa<br><font color="green"><u></u></font><font color="red">TCCACCCAGAATAAAAAAAAAAAAAAAAAAAAAAAAGAAATAAATAAAAAGAAAAGAAAGAAGAAAGAGAAAAGCAAAATGTCTATTCCGGTCTATTGCC<br>TATTTTTTGAATTTGGATTTTGGTTTTCTTGCTATTGAGTTGTTTGAGTTCCTTATATATTTTGAGTAATAACTCCTTATCATATTGAGTTGTTTGAGTT<br>CCTTATATATTTTGAGTAATAACTCCTTATCAGATGTATTGAGTTGTTTGAGTTCCTTATATATTTTGAGTAATAACTCCTTATCAGATGTATGCTTTGC<br>AAATAAATTTTCCCATTCCATGCAAAAAAAAAAAAAAA</font><font color="green"><u></u></font>caagagttcgaagacaactggacaggaatctcacctttcataaaatggtggcatggatgatt<br>gcacttcactctggtaagtttattaaagaaaacttggaaccagggagttccctctattcatagatacctttttatataggagatcaaccagttttatagt<br>tagattaagtggtggttggatatgttgtatttttttaatgagttttgctcaaaagtatttaccacactttctgccacttcaatattaggatttattcctt<br>taggttttaaagcatttttatttcaggattttcctataaaaatgaaaatatgccatcagaaaagtcaatcctagtgtcctcaccctttgctattctttct<br>agtgtcaaaaatgttaattcactcatgaaaacttattt	Other	<UL><LI>Brouha B, Meischl C, Ostertag E, de Boer M, Zhang Y, Neijens H, Roos D, KazazianHH Jr. Evidence consistent with human L1 retrotransposition in maternal meiosis I. Am J Hum Genet. 2002 Aug;71(2):327-36. Epub 2002 Jul 1.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12094329">PMID:12094329</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	56	NA	NA	Chronic granulomatous disease	exon:CDS:CYBB:NM_000397:4/13	
0	chrX	20132151	20132152	2000400	0	+	RSK2; RIP_L1_chrX_019_02	GGAGGAGATTAACCCACAAAC	AACCTCTACCAAGATATCACG	LINE	L1	L1	TAAAAACATTAAAATAAATATATAAATTTGAAGATGAATCAAACCCAGTTTTAATCTTCTAAATGTTTACTTGTATAAAACTCAATATGAATTTATAATA<br>CGTCTTTTATAACGTGGCAACTCTGGTTCTCACTAGTTATATGATTCCTAGCCTAGCAGGAAAAATTCACTAAAAGTCAGCCTAAATTTAAAGCTGGTAA<br>CAGGAACCTATTCAGAATGTAAATAACATGCCAAGGAGTCCCATGAGCTCTATTGAGACCTTTCAGTTTGTTTAGACTACATGAACATTACAAATAGCAG<br>CAACACTTACCTTTCAGTGTGGCCTTCTTCAATACCTTCATGGCATAAAGCTGCCTAGCATCAGAGCCTGAGATTTTTTTAACTAA<font color="green"><u>GAAAACCTGCATTT<br></u></font><font color="red">CCTGAATGGTAATGCCTAGNNNNNNNNNNAAAAAAA</font><font color="green"><u>GAAAACCTGCATTT</u></font>AAGTAAGAGAAAATAAATATTACAAAGTAGTATAAACTATATCCTTGTTA<br>AAATAAGACCCTGCTATAATACAGTTTATTATTATAATATAGATTCAGATATACTGTAGATTATTTCCCCTAAAATGTATCAATTATAAATACTAGTTAT<br>AAACATTTGTTATAACTTGGGGTGTCAATATAAGGGAATACATTTTTTTCATTTTGTTGTTTGCCAGTTCCCAAAGAGCATGTAACACATTAAGACAGAA<br>AAAAACCCTTTAAACTACATATGTATGAATTAGATGGAAAAAATCCCAAAATGTTTAAAGTATAACACAGGTGGTATGATGTCCTGCTTTTAACAAAACA<br>GAATTCTACTGAGCCCGTCAAAATTGTTATACGGCG	Other	<UL><LI>Martinez-Garay I, Ballesta MJ, Oltra S, Orellana C, Palomeque A, Molto MD,Prieto F, Martinez F. Intronic L1 insertion and F268S, novel mutations in RPS6KA3 (RSK2) causingCoffin-Lowry syndrome. Clin Genet. 2003 Dec;64(6):491-6.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14986828">PMID:14986828</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	The primers were designed for RT-PCR on cDNA targeted for region from exon 2 to exon 5.The insertion size is estimated to be at 2.8kb.	NA	NA	NA	Coffin-Lowry syndrome (CLS)	intron:RPS6KA3:NM:004586:3/22	
0	chrX	85100618	85100619	2000401	0	-	CHM; RIP_L1_chrX_085_01	GAATTTCAGCTAATCAATTCTGAGCCTG	CGGAGGACTGGAATTTACTGCTTTATGA	LINE	L1	Ta	atatgttaggttaaattattagcagggtctgaggaggaactctaactaaacacattatttctgcagtgaaatatatgaatatttatgttaatttggacaa<br>acaaagccagagtgccttatcagtatggatcaggttttgctgctaaacatgttttgtaaaaacttatggattgcaaagttttttgaattttgaatttcag<br>ctaatcaattctgagcctgtaatagattgtgttatgtattataatatttataggtatgattgtttctacaaataataaaaaatatagcaaaattatgtat<br>ctttattgttttccaatttttctactatttcaacttttatcttgtaaaatattttctttgtacagctgctgtattctcgaggatta<font color="green"><u>CTAATTGATCTTCT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>CTAATTGATCTTCT</u></font>aatcaaatctaatgttagtcgatatgcagagtttaaaaatattaccaggattcttgcatttcgagaaggacgagtg<br>gaacaggtactgtgctgatcaagaattgtaactgggcatcagcttaagttattatggtttgttttggaaagataagcaaataagattgttattttcctca<br>taaagcagtaaattccagtcctccgtggtgatttacaaatgtaaatgcttaattaaaatttctagtgctaattttctcatggcttactctgcagcttggt<br>gttggtaccaagcagcacacaaaaaaccaaaaagcacaccagagttactatacccaagactagtcacacaaatccttttctcccattaatcaagattttg<br>gagagggaaa	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID:15983781</a>.</LI><LI>van den Hurk JA, van de Pol DJ, Wissinger B, van Driel MA, Hoefsloot LH, de WijsIJ, van den Born LI, Heckenlively JR, Brunner HG, Zrenner E, Ropers HH, CremersFP. Novel types of mutation in the choroideremia ( CHM) gene: a full-length L1insertion and an intronic mutation activating a cryptic exon. Hum Genet. 2003 Aug;113(3):268-75. Epub 2003 Jun 25.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12827496">PMID:12827496</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	Choroideremia	exon:CDS:CHM:NM_000390:6/15	
0	chrX	33139397	33139398	2000402	0	-	DMD; RIP_L1_chrX_032_01	NA	NA	LINE	L1	Ta	tggatattaatcagaacacagttgagcattgtttgaattcacagagcttgccatgctggaagcacaaccttatatgtagtgaccatggacagtcctatta<br>tgggaaaccaacttgagagagaaggcgggtcacttgcttgtgcgcaggtcctggaatttgaaatatccgggggcctctacagaatcctggcatcagttac<br>tgtgttgactcactcagtgttgggatcactcactttccccctacaggactcagatctgggaggcaattaccttcggagaaaaacgaataggaaaaactga<br>agtgttactttttttaaagctgctgaagtttgttggtttctcattgtttttaagcctactggagcaataaagtttgaagaac<font color="green"><u>TTTTACCAGGTTTTTTTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>TTTTACCAGGTTTTTTTT</u></font>atcgctgccttgatatacacttttcaaaatgctttggtgggaagaagtagaggactgttgtaagtacaaagt<br>aactaaaaatatattttactgtggcataacgtttagtttgtgacaagctcactaattaggtagattgattttaaattatcacagtagtttgcaaagaagc<br>ataaatgttatatatactgcatatatatatgtatttattcaggaatatatatttttcattgggaaaacttttcaacagaaatggagtgtaaaagtttttc<br>tttgcgatagaactaaacacatgatttcttgattaacaaaccactgcagtaatagaatatgcagaatgtcatttgactataacagatttattttgattgc<br>tgtgagatag	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID:15983781</a>.</LI><LI>Yoshida K, Nakamura A, Yazaki M, Ikeda S, Takeda S. Insertional mutation by transposable element, L1, in the DMD gene results inX-linked dilated cardiomyopathy. Hum Mol Genet. 1998 Jul;7(7):1129-32.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9618170">PMID:9618170</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	X-linked dilated cardiomyopathy	exon:5UTR:DMD:NM_004006	
0	chrX	138470631	138470632	2000403	0	+	F9; RIP_L1_chrX_138_02	NA	NA	LINE	L1	NA	ccccatgaagcaaattttgccatcagagaaactgactcatggggaaaaaatccaaggacctcaaatcaccaaaagaagccattcctcagatttgcctaag<br>cttaagcttccctgtctctcattgtgtgttgctttcaatgcagttacataaatggcttttttgtttatgcaccaaaaacactaattcatctgcaaagctc<br>acatttccagaaacattccatttctgccagcacctagaagccaatattttgcctattcctgtaaccagcacacatatttatttttttctagatcaaatgt<br>attatgcagtaagagtcttaattttgttttcacaggttgttttgaatggtaaagttgatgcattctgtggaggctctatcgttaat<font color="green"><u>GAAAAATGGATTGT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GAAAAATGGATTGT</u></font>aactgctgcccactgtgttgaaactggtgttaaaattacagttgtcgcaggtaaatacacagaaagaataataatc<br>tgcagcaccactagctctttaatatgattggtacaccatattttactaaggtctaataaaattgttgttgaataaattgggctaaaggcagaagggtcat<br>aatttcagaacccacgtcgcaccgtcctccaagcatccatagttcttttgatatacccctattatcactcatttcagtgaggtacaattagttcttgatg<br>tagccatttccataccagaaggccttcccaaaaatcagtgtcatgtcaccgatccttttatctctggtgcttggcacaacctgtagcaggtcctcagaaa<br>acaaacattt	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID:15983781</a>.</LI><LI>Mukherjee S, Mukhopadhyay A, Banerjee D, Chandak GR, Ray K. Molecular pathology of haemophilia B: identification of five novel mutationsincluding a LINE 1 insertion in Indian patients. Haemophilia. 2004 May;10(3):259-63.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15086324">PMID:15086324</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	Haemophilia B	exon:CDS:F9:NM_000133:7/8	
0	chrX	37539883	37539884	2000404	0	+	CYBB; RIP_L1_chrX_037_02	NA	NA	LINE	L1	NA	ctatgaaacctggcttccttgccttgagacaggataaactctaagttgtaacttaccctccagagttgccttgcaggatcaggctgaagctatcccctgt<br>gagactgcctgatttcacccccttgcttgacttgtttgtcttttctatcctattccctactctcttaccagtttctcttggagcacatgttttctaagtc<br>acttgcccatgaagtctcatctcaggatctgcttctggggagcacagctgatgatgttcagcattcccagaatatatttgcaaactaagcactgtggccc<br>tttcaaaatcaaagggagaaagagccttcagacacttttaggacatcctgtagttgattgatttcctttattttctaccccctt<font color="green"><u>AGAAATAACTATTTAA<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AGAAATAACTATTTAA</u></font>gtacatcagttcacatttcctatgacatcttaaccatgtaagacattttaaaatttagaaacatctatttcaaa<br>tctatatctgtctgtgagggatgattaggattattcaaagagggggtgaaaatatctattgttctatacattggacactttataatagtcctgcatttga<br>gaacctataatattgtgcttgcgcacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatattttacagaaccctgaaggag<br>gcctgtacctggctgtgaccctgttggcaggcatcactggagttgtcatcacgctgtgcctcatattaattatcacttcctccaccaaaaccatccggag<br>gtcttacttt	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID:15983781</a>.</LI><LI>Meischl C, Boer M, Ahlin A, Roos D. A new exon created by intronic insertion of a rearranged LINE-1 element as thecause of chronic granulomatous disease. Eur J Hum Genet. 2000 Sep;8(9):697-703.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10980575">PMID:10980575</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	Chronic granulomatous disease	intron:CYBB:NM:000397:5/13	
0	chr1	12798812	12798813	2000405	0	-	1104685019043	NA	NA	LINE	L1	L1HS	gcataggataccattaggaggtatacctaaggctaaatgacgagttaatgtgtgcagcacaccaacatggcacacgtatacatatgtaacaaacctgcac<br>gttgttcacatgtaccctaaaacttaaagcataataataataataaaagaaactcactcaaaaccgctcaactacatggaaattgaacaacctgctcctg<br>aatgactactgggtacataacgaaatgaagacagaaataaagacattctttgaaaccaatgagaaaaaagacacaacataccagaatatctgggacacat<br>tcaaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcagaaaagatctaaaattgacaacctaacatcactatt<font color="green"><u>GAAAGAACT<br></u></font><font color="red">TCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGGGGGGAGG<br>GATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTG<br>CACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAGAAAGGAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAAAGAACT</u></font>gagaagcaagagcaaacata<br>ttcaaaagctagcagaaagcaagaaatagctaagatcagagcagacctgaaggaaatagagacacaaaaaacccttcaaaaaatcaatgaatccaggagt<br>tggttttttgaaaagatcaacaaaattgatagactgctagcaagactaataaagaagaaaagagagaagaaacaaatagatgcaataaaaaatgataaag<br>ggcatatcatcacggatcccacagaaagacaaactaccatcagagaatactataaacacctctatgcaaataaactagaaaatctagaagaaatggatta<br>attcctcgacacatacaccctcccatgactaaaccaggaagaagttgaatccctgaatagatccataatag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	102341515	102341516	2000406	0	+	1104685455798	NA	NA	LINE	L1	L1HS	ttttaaaggcctttataatttctataatttatatttaatttggcaattaaatcccttttaattttgctctagcacactagactttttctcttcatacttt<br>atgaggtaaattttgctatttgattttcacctgagttgtttcttttaatagcaaaattaaggctatttagttgacaactgcctagggttatcaagaattg<br>atacaggttacctattgaaacaggttatccagaaattgaaagttgtagatgggaaaaaaagttttttgtgaatttataagatgtacttctatcagcatac<br>ctaatacatctacatatttatgtgttgtatacacagtgttgcattactgaaaatatatagaagagctctcattaattggcttaag<font color="green"><u>CACTTTCATTTTCTT<br></u></font><font color="red">ACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAA<br>GGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAA<br>GAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATACAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATT<br>CATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACG<br>AGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAAT<br>ATACATTTTTTTCAGCACCACACCACACTTATTCCAAAATTGACCATATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAAC<br>AAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTG<br>AATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCAT<br>TCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCCACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACT<br>AGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAA<br>AAAATCAATGAATCCAGGAGCTGGTTTTTCGAAAGGATCAACAAAATTGATGGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAG<br>ACACAATAAAAAATGATAAAGGGGATATCACCACTGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGA<br>AAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAA<br>ATTGTGGCAAAAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCAT<br>TCCTCCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACAC<br>AACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAG<br>CTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAG<br>ACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGG<br>GACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACA<br>AGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAG<br>GAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAA<br>CTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTC<br>CCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACATGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGG<br>AAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAG<br>ATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCC<br>AAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAGACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGT<br>ACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAA<br>GCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACA<br>AAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGG<br>GCAAGGACTTCATGTCCAAAACACCAAAAGCAATTGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGA<br>AACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAAAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTC<br>AAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAAC<br>ACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAA<br>GTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTG<br>TGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCTATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAG<br>ACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTG<br>GCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAA<br>CTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGAACACTTGGACACAGGAAGGGGAATATCACACTCT<br>GGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCAC<br>ATGTATACATATGTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAATTAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CACTTTCATTTTCTT<br></u></font>ttaaatcaaatattttatcagaaaaagagactagtcaaatgctttttcaagttcatgtaacttaagtaaaatctttaataaataagctagctttaaaatt<br>attggtaaagtataataatattagaaatgtcttaagaattgccagcatacatttttatttgcatttataaatcaagcaattttatacttatctatgccaa<br>atactataaggtgtcaaaagttggcataggggttacaaaactgtaaacccagcaccaaacagtgatctttgcttgtgtaatttttaataaataagacatt<br>gatattggcgtaatgaaaaaagctacatcttgaattatttagtaaaattactataacttctaatcttgtggctttaggtagtaca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	19256673	19256674	2000407	0	+	1104685340975	GCATTGCATTTTCCTTTCTGA 	GAACAATACACTGCCCTCACC	LINE	L1	L1HS	ataagttttataatagatatttgtttaaaaagtaggctgagccaagtaaagagtcattatatacttttcttcttaaatggaaaatatgctttcatatgat<br>tttgaaaagacgcaagaatagcaatgttttaggcatatctggtactggctttgtgtaggaaatgataatagtcaattattaccatttttaataagagcat<br>tgcattttcctttctgaagtgctctaaagtgactagttttgcatataaaactgtgaatatcttggggacagagctgcatcacatttctttgtactctgtg<br>tctagcacaatacctggtacacagtaaaaagacaagaaatatttgttttccaaatagttttttttttactacaaatatatttttt<font color="green"><u>TATGTCTCACTTCTT<br></u></font><font color="red">TGTCTTTATAGCAGCATGATTTATAGTCCTTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCG<br>CCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCGCATCCTCTCCAGCACCTGTTGTTTCCT<br>GACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTCTTCA<br>TGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGCACACGTATGTTTATTGCG<br>GCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATG<br>CAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACA<br>CCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGG<br>GGGGAGGGATGGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGAACATGTATACATATGTAACTAACCTGCA<br>CAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TATGTCTCACTTCTT</u></font>attattggattttcatcatttccat<br>cactttacacattgtgttaatgatctatagttttaatataaaaacttcaatgtcagataaatttcctttctattttaaagtataatctatatctcaggca<br>agtaaaaattctattcttcatgtaaagtattattttggaaaacaaattctgaagtaaagtttttttttgcttgagaaatgagtgttacattttcacaatt<br>tagaattttaaacatagcttagggtgaccattgtttaaggggaaaatgattagactttgagattcttaaggtgagggcagtgtattgttctggctgcctt<br>tatatttggaattcctagcatatagtaggaaatcaataaatattgaattcaatcagtaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1393	520	NA	intergenic	
0	chr10	59178870	59178871	2000408	0	+	1104685134100	NA	NA	LINE	L1	L1HS	aatagtgctgcaatgaacatacacatgcatgtatctttgtaatagaataatttatattcctttgggtatatatccagtaatgagattgctgggtcatatg<br>gtatttctggtactaggtctctgaagaatcatcgcactgtctttctcaatggtcgaactaatttacattcccaccagcatttctccgcagcctcaccagc<br>atctgttgtttcttgactttttaataattgccattctgactggcgtgagagggtataccactatggttttgatttgcatttctctaatgatgagtgatgt<br>tgggcttttttacatatgtttgttggctgcacaaatgtcttctttagataagtgtctgttcatgtcctttgctcactttttaatggggttgtttt<font color="green"><u>NNNNN<br></u></font><font color="red">TAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAAT<br>AAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTCATACAAAAATCAATTCAAGATGGATTAAAGATT<br>TAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACACAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAA<br>AGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCT<br>ACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACA<br>ACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGC<br>CATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGA<br>TGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAG<br>AAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGC<br>ACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCA<br>GCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACC<br>GCATATTTTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGG<br>GGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACA<br>ATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>tttgtttaagttc<br>cttgtagattctggatattagacttttgtcacatggatagattgcaaaatatttctcccattttgtatgttgtctgttcactctaatgatcatttctttt<br>gctgtacagaagttcttcagtttaattagatcccatttgtcaatttttgcttttgttgcaattacttttgacattttcatcatgaaatctttgccaatgt<br>ctatgtccaatagtattgcctagatttccttctagggtttttatagttttttattttacctttaaatctttaatctctcgagttaatttttgcataaggt<br>gtaaggaagaggtccagtttcaattttctgcatatggctagccagttctcccaccatcatttgtcaaatagggtatcctttc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	26375120	26375121	2000409	0	+	1104685625761	TGCTTCAGATAAATAAGACTGAGC 	CCTCAGTCCTTGCGATTAGC	LINE	L1	L1HS	aggaatactatgcatccataaaaaaagatgagttcatgtcctttgcaggtacatgaatgaagctggaaaccatcattctcagcaaactaacacaggaaca<br>gaaaaccaaataccacatgttgtcacttataagtggaagttgaacaatgagaacacatggacacagggaggggaacatcacacgtcgggggcctgtcagg<br>tggtgggggactaggggagggataacattaggagaaatatctaatgtagatgatgggttgatgagtgtggcaaaccactatggcacatgtatacctatgt<br>aacaaacctgcacgttctgcacatgtatcccaggacttaaggtataataataaaaaaatgcttcagataaataagactgagctaactaacctctcac<font color="green"><u>TCT<br></u></font><font color="red">CTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATAT<br>CATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGG<br>ACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTAT<br>ATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAA<br>TGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGA<br>CATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAG<br>ATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGAT<br>GACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>TCT</u></font>aaaaaacaaaaacaaaaaaataaagtaaaatggattattccctgcagccagaaggctgtgaaacagaacctttagtttct<br>tattctcctcagttcataggacatttaggtgcagctattgtcatcagttacacatgaagaaacttgtattagctgcttcaagctaatcgcaaggactgag<br>gacattttagtactcagtacttagtacttcagttctcagtacttaagtactttgaacctcagtgttctcagtagtaaaaatgatgtttttatatgtatat<br>gtattttttttctaagagttgtaatgagtaagatctaacctcatagcctaggctttagaagttttcaactggtattataatgttttatttttagcttgct<br>ttcctcttatacaaatg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1042	224	NA	intron:ANO3:NM:031418:1/27	
0	chr11	33626715	33626716	2000410	0	+	1104685623868	AGGAGGTGCTTTGAGCTCTG 	CCCTTCTTGTCTCCCAACAA	LINE	L1	L1HS	accacgttggccaggctggtctcaaactcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccatcatggctg<br>gccgaatcagaacattattaaacgcagtcttttgttattaaggtttccttctttatcaacaacctgtgaggtccgtattttcaggaaaggagaaaatagc<br>taacaatacagagtagaaatgatgatgattcttaacccaagctcatgcagagtccttttgtgctttgataatgtggaaatccatagaaaaggtggcaatt<br>tagaatgataactatgattactttctgtcttctaaagaggaggtgctttgagctctgccagaagataattggaagctggtggtt<font color="green"><u>TGGCCTAGTGTATTTA<br></u></font><font color="red">TCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAA<br>AGATCAGATAGTTGTAGATATGCGGTGTTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGT<br>TACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCGATGCGGGCTCTTTTTTGG<br>TTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTA<br>TGGCCATTTGAATTGATCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGC<br>ATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAAC<br>TAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTGCTCATCTGACAAAGGGCT<br>AATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAA<br>GAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACAC<br>CAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACT<br>AATTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAG<br>GACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAA<br>TGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAA<br>ATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGA<br>CACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAG<br>TGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAATACTTAGAGTATAATAAAAAAAATAAAA<br>AATAAAAATAAATAAATAAATAAATAAATAAATAAAAATAAAAAAATAAATAAAT</font><font color="green"><u>TGGCCTAGTGTATTTA</u></font>gctaatggcatttataccatggaaaaggt<br>tactgctggtggcctgggatttctgcactgcagttcaggagactcttgatcatattttacccgttaactctgtgaagaaattggactccacatctaatgt<br>ccaatccaattttgctagcagtcataatggatctatgccaagcagaattaaaacatcctacagccttcctgttgttgggagacaagaaggggatttcaaa<br>aaagacaacagggctaacacatcttccccactagactctttacagatggaattaatggtaataaaaataacagcaacagttggcatctgttgagctccca<br>ttgtctactggacacagctaagtgctatgtagaaattatctcttctaatccgaca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1953	284	NA	intron:C11orf41:NM:012194:16/20	
0	chr11	97701516	97701517	2000411	0	-	1104685400974	NA	NA	LINE	L1	L1HS	ttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactacca<br>tcagagtgaacaggcaacctacaaaatgggagaaaattttcacaacctactcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaat<br>ttacaagaaaaaaacaaacaaccccatcaaaaagtgggcaaaggacatgaacagacacttctcaaaagaagacatttatgcagccaaaaaacacatgaaa<br>aaatgctcaccatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcat<font color="green"><u>TTTCCTGACTTTTT<br></u></font><font color="red">AATGGCACATGTATACATATGTAACTAACCTGCACAATGTACACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAATTAAAAAAAAAA</font><font color="green"><u>TTTCC<br>TGACTTTTT</u></font>gaacaggtgctggagagggtgtggagaaataggaacacttttacactgttggtgtgactgtaaattagttcaaccattgtggaagtcagtg<br>tggcgattcttaagggatctagaactagaaataccatttgacccagccatcccattactggctatatacccaaaggactataaatcatgctgctataaag<br>acacatgcacacgtatgtttattacggcattattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtg<br>gcacatatacaccatggaatactatgcagccataaaaaaggatgagttcatgtcctttgtagagacatggatgaaattgtaaataatcattctca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	133810852	133810853	2000412	0	-	1104685297600	TGGATCCCTTTGGCTACATC 	GTTGGTGGTCCTGACGCTAT	LINE	L1	L1HS	atcccctgactgctgcactggggagtgactgtggtgagggacgtgtcctcccccagggcctctgccctccatttgcctcacaacccagggcccagcacag<br>tcgggatcaccaaggttagagctgtttcctcctctcagaaccacagagggggccctgaaagtgcaagattggaatgccactccaaatgccacttggcttc<br>cctgggacccactaactgggcagcagggacctcagtgctctgggaggagttggtggtcctgacgctatgcacccctttgggcagaatgacccctagggga<br>cagaggcagcgaggggcatcactcagattacctggtggaccctcacacaccactctcattaaataggtaagagaataaaagctcagaaaggttcg<font color="green"><u>NNNNN<br></u></font><font color="red">ACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGA<br>GATCACATGGACACAGGAAGGGGAATATCACACTCTAGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGA<br>TGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAAAAA<br>AAAAAAATTTAAAAAAATAAAAAAAA</font><font color="green"><u>NNNNN</u></font>tatggggcaagcccgtgttctagcccagatctgtgtgaggttgaagcctttgaaggaagggcatggccc<br>aggaatagaggatgtagccaaagggatccagaagagttaggcttcagaattccgcccactcatggacagccaggtcccagtgagggccaagaaagaccag<br>ctccctacaccatgagcctggctgaggagccagcctggaaccctgggaaggaagggatctgtgctccatttgggcacgcagaatcatgcctgatcccaga<br>cagactttatgtcatcagcttttcagctttactctccaggatggtggatttgatagaagaaggaattgtctgggttgtatgtccaatatgcaattgtatt<br>gtatatgggacatcctagttctcgct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	582	262	NA	intergenic	
0	chr13	57820383	57820384	2000413	0	+	1104685360107	GAGTTCCTTTTCAAATTTCTCCAA 	TGTGTGAGCATTTTCGGAAT	LINE	L1	L1HS	acacggtgctggataccagaatgcaaaaggaaggaaaagtgaagtgggggcagaatggcataaagaagtacttaattaaaatcttcatggtataattgcc<br>ttcagggctaattaattttgtcttgaggtaagggtaaataaattggagtttattcctgtgtgtttctgcataggtataaggaagtattgggacataattg<br>taatatatttttttttccaaatatgtcaaaggattacatggctaaaggtgatagaaaacagggtgctccatttggaattaaaggaaaacttaaagtcatt<br>gctgcttctctctaaatcttctgaatttatgtgtgagcattttcggaattataaacaatgggagaattcagcttctgaatgtaatatgaa<font color="green"><u>GCTAATTTTC<br></u></font><font color="red">GACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATG<br>GAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGAC<br>AAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACAATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAA<br>AGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACA<br>GAAAGTTAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACA<br>TTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACT<br>ATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGA<br>CTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAA<br>GCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAA<br>AGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAAT<br>CAATGAATCCAGGAGCTGGTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAGAGAGAAGAATCAAATAGACACAAT<br>AAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTA<br>GAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGG<br>CAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCT<br>GAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAA<br>AAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCC<br>ACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAA<br>CCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTAT<br>TTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGG<br>GATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGA<br>GGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGC<br>AAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCA<br>CAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAA<br>AGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAAT<br>GCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAA<br>TCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAA<br>CAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGG<br>GGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCA<br>ATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGA<br>CTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACC<br>ATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAACAAAT<br>TTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAG<br>AAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAA<br>ACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATT<br>CCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACAGGC<br>ACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATAT<br>ACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCA<br>AGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTG<br>TGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATAC<br>ATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GCTAATTTTC<br></u></font>tgctcatcggtttggggaatttatatgaggattctcatataaaggaggatataatttattggagaaatttgaaaaggaactctatatatgtatatataat<br>atgtatacacacacatttttgcctgcaattctgtggtgatttgtaggtattatatgtgtataagtacttaatagccaaactgcaaagtagctttgttatg<br>atattaaggattattattgtgaaattttctttttctatatttttttctttagagaatataatgaaattttgcaagaatcattggaaattctttccaaagg<br>agttagaggacagctgaacataatatcagtgtgtactaacaagtagaatattttgcaaacaatataaataaatgtatggcattaatttcc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	6212	151	NA	intergenic	
0	chr13	103094240	103094241	2000414	0	-	1104685249031	NA	NA	LINE	L1	L1PA2	gggaaaattggatagtcacatgtagaataacgaaaccggactcctatctctcaccacatacaaaaatcaactcaacaaatgggttaaagacttagacgta<br>tgacccccaaatacaaaaatactacaagcaaacctagggagaactcttatagacattgagctaaggaaagaatttatgacaaaaccttcaaatgcacagg<br>tagtaaaaacaaaaataaacaaatgagactcaactacagaacttctgctcagcaaaattcaaaataactggactgaaaacacaacctgaaaaatgggcaa<br>aaatatttgtaaactattcatccaacacagaagtaatatccagaatatagaaggaaaccaaaaactcaataaaaaatatctcat<font color="green"><u>TCCTTGCCCACTTTTT<br></u></font><font color="red">AAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACT<br>CAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAA<br>CACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCCACACCAGTTAGAATGGCAATCATTAAAAAGTC<br>AGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGG<br>CGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACA<br>CATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCA<br>CATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTA<br>TCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGG<br>GACTGTGGTGAGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATG<br>TATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAATAGATTAAAAATAAAAAATAAAAATAAAAAAAA<br>ATAAAA</font><font color="green"><u>TCCTTGCCCACTTTTT</u></font>catgaagagacaacatttctcaaaagaagaaatacaaatggccaacagtatattaaaaaagtgctcaacatcactaat<br>aatcagaaacatgaaaatcacaaccacaatgagacatcatcttaccccattcagaatggctattattaaaaagagaaagaaaataacagatgtatgtaag<br>gatccaaagaaagtgaactcttatacaccgttggtgaaaatgtaaactagtagagtcacaggggaaaacagtatgaacatttctcaaagaactaaaactg<br>gaactactattcaatccagcaatcccactactggatatttatccaaaggaaaagaaatcagtaaatcaaagggatacctgcactcgcatatttactgcag<br>caccat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	78157794	78157795	2000415	0	-	1104685165983	AAGGGACTGACTGAGAGCTGA	CATCCCCAGTGGAAGAAGAA	LINE	L1	L1PA2	tttgctaaattttatcatatgaacaaaccatttttcttgttgcctttcactcaaacagaataccaaatcttttcctttctcttcatattttccttaaatt<br>cctttcatctctggttgagaatttcatctggacttctgaaaatggtgtttctagaaaaagttatatagctcccatctggcactcaaactttgtgtctgtt<br>tttacaacactgggggatggcctcttggggtacctgataacagatcccaaccagtgccaataggtgtcagggcccaccatcaccactcagcacttctctg<br>tggcccagcaccaaccctagactcatgcctatcagagaccatccccagtggaagaagaaaagtaaaggcactgtagtgaatttttataaaactg<font color="green"><u>TGTTTA<br></u></font><font color="red">ATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAA<br>TAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATG<br>GAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTA<br>CCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCTGCATCGCCAAGTCAATCCTAAGCCAAAAGAACA<br>AAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATG<br>GAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTT<br>AATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAG<br>ATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACC<br>AAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAAGTACCATCAGAGTGAACAGGCAA<br>CCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAA<br>ACAACCCCATCAAAAAGTGGGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACT<br>GGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGA<br>GGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAAC<br>TAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGC<br>GGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTAT<br>GCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAAC<br>ACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAT<br>GGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGC<br>ACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAAAAAAAAAAAAAGAAAAAAAAAAAAAACT</font><font color="green"><u>TGTTTA</u></font>ttccatggaaaccagttgctt<br>tgtattctgagattgtatcttttcttactttttctgtctttaaaatgtcctttcttttgtttggatagcgtattaaaattgccttctttgaaatggttta<br>tctttgcaaaactaaaatgctgtcagctctcagtcagtccctttatctttgttgttgttatttcttttttactactttgtgaaatatcggtctgggtgta<br>gaggttaagagtatacatcttggcctcagtggtcagggctggattcaaattcctgctcctccactccttattggtaaagtaaccatagacatgttgctaa<br>accactataagtttttgtttattcatattacaatggagatatcagtgcctacattgtgaggttgtcaatatat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	60	2103	226	NA	intergenic	
0	chr13	90424233	90424234	2000416	0	+	1104685252691	GGGTGGTAGCCCCATCTATT 	ATGTACCCATGGCCATTCTG	LINE	L1	L1HS	taattatgacaaatgcttttgactatagagtaaattagattaaaattttccaccagaatattcctttaatattcagttgaagcaaggacattgagggaaa<br>attttaataggaaagaaaaaagttccgaatatgtatttccacatgaaaactgatctggttagagcaaaggactgataataagcatagaaaatcggcctga<br>aaatgtgaaaaggaatttagaaaggataagtagatgaaaagtaatgataaactttgcctgcttcattattttgcctatgacaggtcatcatcaattatgt<br>acccatggccattctgacaaacgacaggtaagtttcactaagcaccaacccatctgcagggtaagaaaaataactaagttaacttcaaatt<font color="green"><u>TATTTTCTT<br></u></font><font color="red">CCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACA<br>AAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATG<br>GAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTT<br>AATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAG<br>ATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACC<br>AAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAA<br>CCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAA<br>ACAACCCCATCAAAAAGTGGGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACT<br>GGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGA<br>GGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAAC<br>TAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGC<br>GGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTAT<br>GCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAAC<br>ACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAG<br>GGGGGAGGGATAGCATTGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCA<br>CAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TATTTTCTT</u></font>gaaaaagtgtctcagttttcccaagaa<br>gcctaatagatggggctaccacccacctcttatggatagtgggaagtctgttgtaaatcatgactcagttgcttatgagctcactgtctcttttcccttt<br>aggtgaaaggaggttactaaacactttccttgacctgcccatcctcctgccctaggaccaagccacaagcatattagaaaacagaaaacaagccgaggaa<br>agtctttctgggtttttagcatgtgcttccctctgaaattatatttttcaaatataaatttagaataagagaaaataatggaagtccatgttttaattgc<br>aatgttgtctcaatccattcccctacagaatacactcaagtaatccatggtatttcatggtatt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1728	156	NA	intergenic	
0	chr14	35744511	35744512	2000417	0	+	1104685635796	AAGTTATGGCACAGACAGAAAGAA 	AAGGGAGACAGAAGCGAGTC	LINE	L1	L1HS	gtctgacccagtctaatacttttacattctttgatttataagttgattaaagtttttgccaattcaggaggaaaaaatcacaagagtagaatgttattca<br>aattgtttggtattaggtgacttggtatgttagcgctactgaagcaaatatatagacaagactttggttgattggcaggattttgactagattaatcaga<br>catttgagcattatgaaaaacaatcatttttctttaacaattattgccttttaaatgaataagctaatatgaaagtgacaagtgagacctcactaggggc<br>tgagatagctaacataaatatgtaagttatggtacagacagaaagaatgacaaaaatttacacatttaaaaacattttatcaat<font color="green"><u>AAGAATTTCCTGTTTA<br></u></font><font color="red">AGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGG<br>GTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAACA<br>TTAAAAAAAAAATGCAAAAAAGAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTTCCTGTTTA</u></font>ataagttttataaaacagtgaagtatgtggattaaagagactcgct<br>tctgtctcccttacttcttgatgtatttttttcctctttctttctccctctctcttttttatctctgtaattgctggcactttaatgtagaaaataggct<br>cattcgtcttgtcttctaatgagctttatacagtataagaaaacgtaaagtctggaaaggggtgttaatgttggatcctaagagccccagcatttgtacg<br>tttgactctatcatcttttatcatgtagcaaaagacataagccaacaaagcgtgctatctatagaaaatacttgtaactgttttgttaacccaagagttg<br>acccctttacatgtaatttcaggctcagaatcagatca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	388	136	NA	intergenic	
0	chr14	93944373	93944374	2000418	0	+	1104685285024	NA	NA	LINE	L1	L1HS	aagcaatttttatgccttatattattgagataccttatattattgctctgagctcaagatctttaccaatttgattggagagcttgacatttataaatat<br>ttatctagttttttcctttgagaatatcagtccatcaattaactgttccatcacccaaagattgttagccaggcaaatctaaatttacatttctaaaagg<br>gatgactcaggagtctaggctgttggttaccatggaaccactgtaatttgtaaagtcattaatttaaaagccctttaagagtttttagaaaatgttggct<br>gggatgtcataagcagtgagtttagcactagcaaaaaaaagtcagaaaattaaaaataggcagaaaaaagagatagagatagacaactta<font color="green"><u>TAGAGTCTTC<br></u></font><font color="red">TGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATC<br>ATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGG<br>ATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCA<br>TCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGG<br>GAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCG<br>CACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATG</font><font color="green"><u>TAGAGTCTTC</u></font>atgttaactctatagttggctgctgtttctatttagttttaagaaaagcaggctt<br>ggggagttgaaatgattccctttaatggccatatattatttttggtgtaatttttccaataattaaaaaatgtacatgagaatggaccataaattttgaa<br>tatgtagccagctggagtctcagaaattttggcatactttagaattttgagaatcccattttatctgttattcatctcttgagagcaaagaaaatcatac<br>gaatcctattagggaatgtcatgaatttgaaccagtgttttaaatagtggcaattgctctaatggcttttaattagctatcctgctcacatcatttagaa<br>tgtttattattttgctctcagaaggtcttcagaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	98748685	98748686	2000419	0	-	1104685149281	AACTTGAGCGGAGAGGCATA	TGCAGATGGAACATTTGTGG	LINE	L1	L1HS	gtaaataggggtttttaaaaatggtttgctggttgtccccaaggcatttgctgagcatttttttcttttcctttgtgctttgcaatgccactcttaaatt<br>attttgtgtctcttgtctctttctggacttcccattctgtttcaccgaagtacttccaataccaaattgttttaattagtacagccttataataggtttt<br>cttatggttagatcaataatccgtttttcctcttgtctttcccaatattactggcccattcaacatctttatttgatttccaatatttattttattccaa<br>gctagaaactggatgaattctagtttttgttttttgttaggctcctctcaaaatcccaatggtgtgctattttaagattgct<font color="green"><u>TCTAAGTGTATAAATTTA<br></u></font><font color="red">ATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTT<br>TCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCT<br>TTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTT<br>GTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTG<br>TAGTATACAGTAACCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCAT<br>CTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAG<br>ACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGA<br>TACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGT<br>GGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGG<br>TATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCC<br>AAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAG<br>GGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAAT<br>GAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTA<br>GATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAAT<br>AAAAAAAAAAAAAAAAATAAAAAAAAAAA</font><font color="green"><u>TCTAAGTGTATAAATTTA</u></font>agaacggacaatttatcatattgagtattcccatccaagagcgagttgtcctt<br>tcagttaaattctttatctcttagtaaaatagggaattttatttgtatacaccctgaacatttcctttaacatttcacggaggtaattttctctttgatt<br>attattgtgaataaaatctttacttccttttattttttttaatacttagaaaagctattgatttttgtatgatagctgtgagatatgcctctccgctcaa<br>gtttctaataggttttcagcaattttggggttttctatgtatagaaagtcatcatttacagattatttgttactatatatgatagtaataaatcaaaata<br>ctttattactatgtatgatagtaataaat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	60	2478	1033	NA	intergenic	
0	chr16	6733827	6733828	2000420	0	+	1104685243766	CAAAGCAACACCCTGTCTCA 	ACATGCGAACACACCACTTG	LINE	L1	L1HS	gcacattttaaatataaagacacaaatatgttgataaggatgaatggtagtgcacacctgtagtcccagcactttgggaggccaaggcaggaggatgcct<br>tgagcccaggagtttgagaccaacctgagcaacatgacaagaccccaactgtacaaaaaatttaaaaattgaagtgagcatggtggtgcatgtctgtagt<br>cccagctacgtgggaggctgaggtgtcagtatcacttgagcctgggaggctgaggctgcactgggctgtcatcacaccactgtattccagcctgcactcc<br>actgcactcagggcaaagcaacaccctgtctcaaaaggaaagaaggaagaaaaataaataaataaataaatgttcattattttttctcatgtgtt<font color="green"><u>NNNNN<br></u></font><font color="red">TTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATGTAGATCAATGGAACAGAACAGAGCCCTCAGAAATAA<br>TGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCT<br>AGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATA<br>AAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAA<br>TTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGC<br>AACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAG<br>GACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAA<br>CCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTT<br>ACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGTGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATC<br>CCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTT<br>GGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCAT<br>ATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGG<br>AATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATAT<br>ACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACT<br>TAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAG</font><font color="green"><u>NNNNN</u></font>atcatgttcatttatttctgattatttgtaacacattttcctata<br>cattaattaaggatattaaccattcatctatgatatatacagtaaatgattttccagtttttcatttgtggtttaattttgtcaatgttatcttttcaat<br>atataaagcaagtggtgtgttcgcatgtttaaataaagtgtatttctttcctttaaaaagtaataaagatacagaatgtgatcactaatctaaagaatac<br>tgaagtaactatactgatatcacacaaatagattctagagaaaaatacatcagggataaagaaggtaatttcacaatggaaaaggtgacttaatcaagaa<br>gacattaaatatttatgcacctcaactttaaaatacatgaaacaaaactg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1715	270	NA	intron:A2BP1:NM:001142333:3/15	
0	chr17	4261742	4261743	2000421	0	-	1104685547987	GTGTGATCATGGCTCACTGC 	GCACACATCAAAGGTGGAAA	LINE	L1	L1HS	cactttgggaggccgaggtgggtggatcacttgaggtctggagttcaagaccagcctgggcaacatggcaaaaccctgtctctactaaaaatacaacagt<br>taggccaggcgcggtggctcacgcctgtcatcccagcactttgggaggccaaggtgggtggatcacgaggtcaagagttagagaccagcctggccaatat<br>ggtgaaaccccgtctctactaaaaaaatacaaaaattagctgggcatggtggcgcacgcctgcaatcccagctactcgggaggctgaggcaggagaatcg<br>cttgaacctgggaggcggagggtgcaatgagctgagatcgtgccactgcactccagcctgggcaacacagagagattctgtctcaaa<font color="green"><u>AATAATAATAATA<br></u></font><font color="red">CACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAG<br>TGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAA<br>AAAAAAAAAAAGAAAAAAAAAAAAATTAATAGAAAAAATAATAATAATAATA</font><font color="green"><u>AATAATAATAATA</u></font>taatacaaaaattaaccaggtgtggtggcaggtgc<br>ctgtaatcccagctactcaggaggctgatatgggagtattgcttgagcccaggaggtcaagactgcagtgagccatgatcacactactgcactccagcca<br>ggtgacagagtgagaccctgtctcaaaaataaataaaaataaattagctgaccatggtggtacacacctgtagtcccagcttctcgggagactgatatgg<br>gagaatcccttgagcccaggaggttgttgaggctgcagtgagtgagctatgacactgggtgacaaagcaagatcctatctcaaaaaaaaaaaaaaaaagt<br>ggaagcacctcgtacgcctaactgaagaatagataaacaaattgaggtgctt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	848	585	NA	intergenic	
0	chr18	57730955	57730956	2000422	0	+	1104685561652	TTTGCTTCAAGGGAGCAAGT 	CAGTATCTCCCCGCTTCTCA	LINE	L1	L1HS	cctttcctctcgccaatcttaacctctctggctagggtaagaagaggaaagcacaatgaagccattgctcagagaagccactgttctgcctttgttctcc<br>cttcttcctaactagcttcagaataaggctgtctcctaccaagcaaaatcagaggtccttgatgtgagccttggaattcaaacccagtgcaagctctttc<br>agatcacagatctcatcacatgtttactgcctacctcaagtagattctcaatgaatgcttaaagtttcgaattttaagaattcaaaccttttgcttcaag<br>ggagcaagtaatgaggtcctggtatgtgaaggtgtggccaacacttctaaatacagtgcaggtaaggggagagccagcactgcct<font color="green"><u>AAAGAAATACCAGCA<br></u></font><font color="red">AAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTA<br>GATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAAT<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAATACCAGCA</u></font>ttgagagaagattttctaaggtcaaatatgtttatatactgagaagcggggagatactgtaaag<br>ttacgaaagaagcctaggaatatttgaccaatatatttaatttaatacctgtctgtattcatttaagaatttacatttacagcagggcacggtggctcat<br>gcctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggaattcgacaccagtgtggccaacatggcaaaaacccctctctact<br>aaaaatacaaaaaaattagccgggtgtggtggtgggtgtctgtaatcccagctactcgggaggctgaggccggaggattgcttgaatccaggaggtggag<br>attgcattgagccaagatcat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	406	171	NA	intergenic	
0	chr2	6968046	6968047	2000423	0	+	1104685199098	GAAAGAGAGAGAGAGAGGAGTTTTT	CAGAATCTTGGATGCCACCT	LINE	L1	L1HS	agatggggaaaggaaaaagaggaatttgcattctttcattggactattacattctttcatgtctaatgccaaacatacaaatatgataatataataagag<br>agtaacaaaagtggtgtgagcacagctcagcagaaagattggctaacccaggggagtgacagaaatgttactagaggtgtcagtggtgcactggagttta<br>aaatagtaggagaagttttccaggccgtcaaggtgtggggatttgatgagagtgtttgcgtttgttattgttgttgatggtggtggcgatgtgtgtgtgt<br>gtgtgtgtgtgtgtagaaagagagagagagaggagtttttaagtactgtatgtattttaaggagattgaataatctaaggtgaggagcattta<font color="green"><u>AATAATA<br></u></font><font color="red">AACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAA<br>AAAAAATAAT</font><font color="green"><u>AATAATA</u></font>gcagaataaaagttaaatacttagaaacatacagcaatgaaacaaaatgacctctaaagggccttttaagtatgtttccatcc<br>agaaagggtctctatagcccctatttttattttttattcccattatcccccagaactttccattcttaggtggcatccaagattctgtccattcctgctc<br>aagcccacctgccacctttatccataacagataaacctcctggtcctaccaagccagacaatctattgtcaggaaaatgttttatgattctcttcttctg<br>caatcttgctggagctcactttccccatcttactgtctcaggtcaggttccctgggaaacagactctgagatggaggttggcggttaagagatgcttagg<br>aagggttcct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	371	256	NA	intergenic	
0	chr2	146737397	146737398	2000424	0	+	1104685264933	CAGAAATCTGAGGGGACCTG	CTTGCCATCTTCCCCATAAG	LINE	L1	L1HS	ggatcacgagaagcaaagaagacataaaaagctgattaaatgcacaaatatttatatttttggatatattaggatcactgatgggattgtttcttttggt<br>gtctatatttgaggttgatataaagacttacttttacataaagcttgctacatactctcctaagaactttatatctattaacccgtgaaatctatcccag<br>tgatcttgttttattatcctcatttcacagacgaagaaactgaggaactaggtggtcaagttagatttcacagctaggctgtctagccagaattcataca<br>gtccctgctgtgtaattgtagcaaagtccttttgattatttcagaaatctgaggggacctgacagctcaaaatactatctgcatttttatttactatt<font color="green"><u>CT<br></u></font><font color="red">CAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCA<br>AAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAA<br>TGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAA<br>TCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGTGCAA<br>GGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACT<br>ACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAAC<br>AAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACAT<br>GAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCA<br>GGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGC<br>GATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATAACCAAATGAGTATAAATCATGCTGCTATAAAGACAC<br>ATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCAC<br>ATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTAT<br>CGCAAAAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGG<br>ACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGT<br>ATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAATAAAAAATAAAAAATAAAAATAAAAAGAAAAAAAAA<br>AAAAGAAAAAAAAAAAAAAAA</font><font color="green"><u>CT</u></font>aatacttctgtatattaaaacaatattacaatacataaaaggcaatatatgtttattcaaccaaagttattgattat<br>cttttatgtaccatattttccactagctaattaaaaaactgaacacatatagagttcaaaggcttacttatggggaagatggcaagttttatttatgggg<br>tatataaaatcattgcatgagacatatactaacaaattattcattgtttattagaaattcaaatttacccacatcacctttatttttatctgctaaatct<br>ggcaaccctggaataaacagatgtgtgacccttggagaatgtgtggaaagacattccaaacggaatgaatgagagaaaaccctcgtgcataaaagtgtag<br>gtatatattgaaatgcttatt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1744	223	NA	intergenic	
0	chr2	180708800	180708801	2000425	0	+	1104685649485	GGATTTCTGATCCGAAGGAA 	GAAACAGGGGCATGTGTTTTA	LINE	L1	L1HS	agcctcccgagtagctggtactacaagcatgtgctgccacaccctgctaatttttgttttgttttgtagaaacagggtttctccatgttgcccaggcttg<br>tctcaaactcctgagctcaagcaatccgccagcctcagcctcccaaagtgctgagattacaggtgtgagccactgtgcctggctcaccaagtaaattttt<br>aaaggatatattaatgttaaagtaaaaagtattctgtaagagattgggaactattttaaaaagagagagattcttactgtagtgaaaatttgtatgtagt<br>tccccaaagaataaaatcagcaaaattcccagatgtgttttcagggttctttgaggatttctgatccgaaggaattagaaaggt<font color="green"><u>AGAAAATATAGGTCTC<br></u></font><font color="red">CAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGG<br>GCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGT<br>GATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTG<br>AAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGC<br>ATGGAATGTTCTTCCATTTGTTTGTCTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGAT<br>TCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTTTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGAT<br>TTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACAATCA<br>TGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACAC<br>TATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCAGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTG<br>GGTTTGTCATAGATAGCTCTTATTATTTTGAAATACGTCCCATCAATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGCTAGCCATATGTAGAAAGCT<br>GAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAAC<br>CTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAA<br>TTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAA<br>AGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTC<br>TCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATC<br>TCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTG<br>TAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATAC<br>CCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTC<br>CAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATG<br>GATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCA<br>CATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACA<br>CATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AGAAAATATAGGTCTC</u></font>ttctttaaaaaagaaaaaaaaatatgcacaattaactctaaaatgttactagatgttacaatctcatttgataat<br>aatatcaaaataaaaataaaacacatgcccctgtttctaagcaaaacaatgacaatgttttttatattaaacgacttatatggcttatgctatatagaga<br>gtttttgctaatggaattaaatgaatcatattaaatacttgttaatgaataaatgaatttatcaaataacctaatagatttttccctttttactcccaac<br>atgtgctatatataaggaaactgaaattcccttgcaattttactgagcttgatttttaatagaatgttgagtgtacatcagcattcctggagcagggcaa<br>ggcagtgag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	2382	159	NA	intergenic	
0	chr3	82792827	82792828	2000426	0	-	1104685296398	NA	NA	LINE	L1	L1PA2	aatactagcaaatcgaatccagcagcacatcgaaaagcttatccaccacaatcaagttggcttcatccctaggatgcaaggctggttcaaatataaacat<br>aaccaatgacaaaaaccacatgattatcttaatagatgcagaaaaggcctttgataaaattcaacatcttttcatgctaaaaattctcaataaactaggt<br>attgttggaacatatctcaaaataatgagagctatttatgacaaatccatagccaatatcacactgaatgggcaaaagctggaagcactccttttgaaaa<br>ccagcacaagacaaggatgccctctctcaccactcctatttaaaatagtattggaagttctggccagggaaatcaggcaggag<font color="green"><u>AAAGAAATAAAGCGTAT<br></u></font><font color="red">ATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCT<br>ACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCCACAACTATC<br>TGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAA<br>ACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTA<br>GGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTA<br>AACTAAAGAGCTTCTGCACCGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGG<br>GCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCA<br>AAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCA<br>CACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAA<br>ACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCA<br>AATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAA<br>CAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGAT<br>GAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCACATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACAT<br>GGACACAGGCAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGTGGGGAGGGATAGCATTGGGAGATATATCTAATGCTAGATGACACGT<br>TAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAATA<br>ATTAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAATAAAGCGTAT</u></font>cacatagcaagagaggaagtcaaattgtctctgtttgcagactacatga<br>ttgtatatttagaaagccccatcttttcagccccaaaacttcttaatctgataagcaacttcaacaaagtctcaggatacaaaaatcaatgtgcaaaaat<br>cacaagcattcctgtacactagcaatggacaagcaaagagacaaatcatgaataaactcccattcacaattgctacaaagagaataaaatacctaggaat<br>acaacttacaagggatgtaaaggacttcttcaaggagaactacaaaccactgctcaaggaaataaaagaggacacaaccaaatggaaaaacattccatgc<br>tagtggacaggaagaatcaacatcatgaaaatgg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	177574028	177574029	2000427	0	+	1104685598709	TGACACAGGGAAATGCTTCA 	CTGCTTCCATGAAAGTGAGC	LINE	L1	L1HS	cagaaatggaagaaagtatatgcaaactactcatccaacaagggacgaatatccagaatacacaaagaactcaagcatcttaacagaaaaaaaaagccaa<br>caatctgattaaaaaatgggtaaatgatctgagcagacatttctcaaaagaagacatataagtggccagccaaatatctgaaagagaagttcaacatcac<br>taatcatcagggaaatgcaaatcaaaaccacaatgaggtatcatctcactccagttaggatggctattatcagaaaggcaatatcaaatgctggtgagga<br>tgcagagaaaagggaacccttaccaccgttggtgggaatgcaaactagtacagccactatggagaacagtatagaggtcccttt<font color="green"><u>TCTATTGGTAGTTTTT<br></u></font><font color="red">GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCTATTGGTAGTTTTT</u></font>ttaccatatgatccagcaatcccactactggaaatttatctg<br>aaaaaaggaattcattgtatcagacagacatttggacccccatgtttattgcagcagtattcacaatagccaagatatggaattaacctaggtgtccaaa<br>aacagatgaatggataaagaaaatgtgttatatatatacacaaaagaatactactcagctataaaaagaatgaagtcctgtcgttcacagcaacatggat<br>ggaactagaggacattatgctaagttgaataagccagaaacagaaagttaaacactgaatgttctcactcatgtgaaagctaaaaatgttgacctaatag<br>aagtgaaaagtagaacagagggtgctagaatctgggactgat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1542	1386	NA	intergenic	
0	chr4	46702542	46702543	2000428	0	-	1104685080890	CGTCTCCCTCTGCAACTTCT 	GGCTGCAAATAAGCCAGAGT	LINE	L1	L1HS	cagggacagagaaaaacacatttttcgttataattctgtcggaaatgatctaatggaagggattccattgtcaaagaatgtcaaaatgagtcagaaaaat<br>agtgtctgatttttaccaagcaaaataaaacaaaagaaattattgcttctttattagaagatgtgaaaaaaaaaagaataacaaaagcctcctcaaatca<br>gatacttccaagtttttaagtaaataaaaaaataagtacaggaagaaatgaaagaagggaggaaagaagacatttgtattcataagacaaagattaaaat<br>gctgaaagtttggctgcaaataagccagagtagaggacaaattaaatgaaggcacagttttgctaagccccatatgttacaagttgactctttca<font color="green"><u>NNNNN<br></u></font><font color="red">CCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATATTATGCAGCCATAAAAAATGATGAGTTCATATCC<br>TTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATT<br>GAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCT<br>AATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGA<br>GTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>attgggtagccattgcagaagcactggttcctaattttagagaagttgcagaggga<br>gacgtaaagttctctgtgattgacaaaaggacatttttagtccttggatcttcaggaggcttaaaaaaagctgactataagttaagagagactgccgatg<br>gtttttaccttatgactgaaatgtttgcattgctttactactttctcttttagcatcaaatggatccttatcagatactgtgctcaaaccacaggtttgc<br>tgcattttcagcatacactgacatttaaaatctcactggatggtcacttcctcactaagaacagtttttgtttgtttgtttgtttgtttgagacggagtc<br>ccactctgtcgcccatgctggagtgcgatggctggatct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	593	159	NA	intergenic	
0	chr4	57821434	57821435	2000429	0	-	1104685021931	NA	NA	LINE	L1	L1HS	atatgctaaatatatatacacccaacacaggagcacccagattcaaaaagcaagttctaagagaccttcaaagagacttagactcccgcataataatagt<br>gggagactttaacagcccactgacaatcttagacagatcactgagacagaaaattaacaaagatattcaagacctgaactcagccctagaccaaatggac<br>ctgatagatatctagagatctcctcaccccaaaacaacagaatatactttctttgcatcaccacattgcacttactctaaaattgatcacataatcaacg<br>gtaaaattttcctcagcaaatgcaaaagaattgtaatcataacagtctctcagaccacagcataaccaaattaggactcaagatt<font color="green"><u>AAGAAGTTTACTCAA<br></u></font><font color="red">CAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTT<br>CATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATC<br>AGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTT<br>ACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCGAAAAATACATGAAGAA<br>ATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAAC<br>AACAGATGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCC<br>TCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCAC<br>ACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATAC<br>ACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAG<br>AACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTG<br>GTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACAT<br>ATGTAACGAACCTGCACGTTGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAACATTAAAAAAAAAAAAAAAAACATAAAAAAATAAAA<br>AATAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGTTTACTCAA</u></font>accatacaattacatgtaaattgaataacttgctcctgaatgacttttgggtaaataatgaaatta<br>gggcagaaatcaagaagttctttgaaaccagtgagaacaaagagacaacataccagaatctctgggacgcagattaggcagtgttaagagggaaatttat<br>agcactaaacatccacatcaaaaaattagaaagatctcaagttagcaacctaacatcacaactaaaagaactagagaaccaagaacaaataaatcccaaa<br>gctagcagaagacaataaataaccaaaatcagagcagaactgaaggagacagagacatgaaaaatcattcaaaaaaatcaacaaatccaggagctggttt<br>tttgaaaaaattaataaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	28930963	28930964	2000430	0	+	1104685317615	TCCCTAATTCTTTTTCCTGCTG 	ACCGGCACAAAGGTGTTAAG	LINE	L1	L1HS	tttaagagatgagtcatttttctgttgctgctttcaagattttctctttatttttagctttcaagatttttactgtaaatatgtccagatgtagctctgt<br>ttgaatttatcctacttgaagtttgtcatgatacttatttgtatagattagtatttttcctcatattttggggtttttcaggcattatttatttaaataa<br>tttcctgtccttttatctctctactttcttttatattctctcattaaagctatatttttgtgcttgatggtttccatgatttctcttagactctattttt<br>cttgttttttgttttctctcttcttcatattgcgtaatctctattactctatcttcatgttccctaattccttttcctgctgagtcaaa<font color="green"><u>CTGTTGATCCT<br></u></font><font color="red">TGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGCAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAG<br>CCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATT<br>ATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGT<br>CAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTC<br>CAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCT<br>ACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTATCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTG<br>TAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTAGAAGAAAACCTAGGCATTACCATTCAG<br>GACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCT<br>GCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAAT<br>CTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTAT<br>GCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGG<br>CAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATT<br>GTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCA<br>TGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGA<br>TTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCAT<br>CATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGG<br>AATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGC<br>ACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u>CTGTTGATCCT</u></font>tt<br>ccagcaattttttaaatccagttattgtattttccagcttcagaatttctattctgagttctttgtgtaatttgtatctctttacttatgttttctattt<br>agtgagatgttgtcactacaccttatttaaatcttcacacactgatttcctttatcccttttaggaaaaagaaatatatatgtttcttttaagtctttgt<br>gtactaaatcttaatctcggccccttcacaggtgtttttattgcctacttttctttctgtgtgtggatcacactttcctgtgttcttttacctgtctcaa<br>cgttttgttgaaattggatattttagatcacatattgaagcaattctcgatactgatacccactatgggagggaggggtgctatgga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	2691	895	NA	intergenic	
0	chr4	17771787	17771788	2000431	0	+	1104685314720	TCTTCAGCCAAGTCCTCTGC	TGGGGAGCCTTACCCTAACT	LINE	L1	L1HS	tgcctctatcatccttaaatctcttctttttctttcattttgtttttgcctctagaaggaatttcctcccatcaaaaaggcttttttttttttttttttc<br>tttttgagatggagttttgctctctcacccaggctggagtgcagtggcacaatctcagctcactgcaaccaccacctcccaagttcaagcaattctccca<br>tctcagcttcccgagtagctgggattacaagtgcatgccaccatgcccggctaatttttgtatttttagtagagacagggtttcactatgttggccaagc<br>tggtctcgaactcctgacctcaggtgatccacccgcctcggcctcccaaagtattgggattacaggtgtgagccactgtgcccgacccaa<font color="green"><u>AAGGCTTTTC<br></u></font><font color="red">CTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCG<br>CTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCCCTCCCCCGACCCCACCACAGTCCCCAGAGTGTGATATTCCC<br>CTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGATG<br>GTTTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCC<br>AGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGAGAATAGTGCCGCAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGA<br>TTTATACTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAAT<br>GGTTGAACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGC<br>AAATCAATAAAAGTAATCCAGCATATAAATAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAAC<br>CCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAA<br>TGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGG<br>GCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACC<br>CCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACAC<br>CAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTG<br>AAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCA<br>ATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGG</font><font color="green"><u>AAGGCTTTTC<br></u></font>aactttagtattctcatattcccatgccttttattcataactcatcccacatctggttcgttccaagaaaaataccaaattcagttagggtaaggctccc<br>caattatctgagaagaggccaagctactataataaggagactcctaactacagaggctcatggaagagaggtttatttctcttaattaatggttcaaagg<br>gaggcagtagtccaagacaggaagatcactctgcctcacgagggtcagctgggaatccagtctgggtcctttgatcatgttgtcctgctattgactaggg<br>tgttgtctgcatttttgacagtggtgttctatgaccacatttatgttctagtctataggaagaggaaagcagagaagtagaggaaaagtg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	2018	522	NA	intergenic	
0	chr4	147444742	147444743	2000432	0	+	1104685730555	ACTCCAATACTGTGGCATCCT 	CATTCTTATTCAATTGGACTGATAGG	LINE	L1	L1HS 	ggaatttggtaataatgattatgatgatagaagctacagagcacttacctgtgttaggttctatgacaagaagtttacaggcatgcatatttcagttaat<br>ctttacaacaaccctttacgatagatattgtcataatatttaataaattatgaacctagagctagggagattaaataacttgcccatagtaacactgcaa<br>ataaaaggcagaaataagtctagaatctagttgctcttaatgtactgctttcctaagacttgttcactttagttgtgcattaaattctatactccaatac<br>tgtggcatcctatgatttcatagaaaacaaaaaaatccacttgttttacaatttgtatgcttatatgcttactactaacttgttataagaagttaa<font color="green"><u>ATAG<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCCGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGT<br>CCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTG<br>AGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAA<br>ACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCAACAGCAACAG<br>AACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTATGGGAGGACATTCAAACCAAAGGCAA<br>AGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGACAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCT<br>CGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAG<br>AAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACC<br>TGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATT<br>CAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGT<br>TAAGGGCAGTCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTG<br>GGGGACAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTT<br>ATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGC<br>CGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATC<br>AAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCA<br>GTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAA<br>AGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAAT<br>TCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGAC<br>TCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAG<br>CTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATGAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAAT<br>TGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTC<br>AGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAA<br>AGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGC<br>CCACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGG<br>CAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATTAATCCAGGAGCTGGTTTTTTGAAAGGATCA<br>ACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCC<br>CACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACT<br>CTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTC<br>CAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAAT<br>CCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAAC<br>ATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGC<br>AAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGC<br>CTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCC<br>ACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAAC</font><font color="green"><u>ATAG<br></u></font>...aattcctatcagtccaattgaataagaatgacaaagtaaaccctaaatattctaagataaactttaagagataataggattaaattgtttatcaatt<br>acatggtcacaaacataactgctgttggaggagtctataaagacaccaaccaaagacagatgcttgttcccaacaatggtcataaacacggagaccttat<br>caaaagttgcagaataaggtaaagacttgctagatgtctgttgttggtgctataaatttccctctacacactgctttgaatgcatcccagagattctggt<br>atgttgtgtctttgttctcgttggtttcaaagaacatctttatttctgccttcatttcattatgtacccagtagtcattcaggagcaggttgttca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	6190	142	NA	intron:SLC10A7:NM:001029998:7/12	
0	chr4	127815642	127815659	2000433	0	+	1104685448920	ACTGGCCATCAGAGAAATGC 	GAAAATGGAACCACTCAAGAGC	LINE	L1	L1HS	taggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaacaatggcaacaaaagccaaaatagacaaatgggatctaatt<br>aaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacagaatgggagaaaatttttcaatctacccatctgacaaagggctaa<br>tatccagaatctactaagaactcaaacaaatttacaagaaaaaatcaaacaaccccatcaaaaagtgggcaaaggatatgaacagacgcttttcagtata<br>agacatttgtgcgcccaacagacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctca<font color="green"><u>NNNNN<br></u></font><font color="red">GCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGAT<br>TAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATC<br>ATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGA<br>ATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCA<br>CCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAATAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>NNNNN</u></font>gtcaggaaacaacaggtgctgaagaggatgtggagaaataggaacacttttacacgttggtgggagcgtaaactagttcaactattg<br>tggaagacagtgtggccgattcctcaaggacctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaagattataaatca<br>ttctactataaagacatatacacacgtatgtttattgtggcactattcacaagtcttggaaccaacccacatgtccatcaatgatagactggattaagaa<br>aatgtggcacatatacaccatggaatactatgcagccataaaaatggatgagttcatgtcccttgcagcgacatggatgaagctggaaaccatcattctg<br>agcaaact	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1328	838	NA	intergenic	
0	chr5	33669105	33669106	2000434	0	+	1104685699696	TGTGCAAATGAAAACCTGCT 	CCTGTGTTGTGGAAACAGGA	LINE	L1	L1HS	aggaatcatctgtttcaaagctgctgggaagagttgggaccagagcatgttcattgcggcaacggaatgtttattcagagagaaacggacagattcacta<br>agtcgcatttacataatggactgctatgcagtcactaaaaggaatgaggtaaaccgtgatgccatgatctactcagtgcatcaagttgcagaactggcaa<br>attatggttctatttgtgtgcaaatgaaaacctgctgttagcatggttatcttggaggaatacattaaatgcagtgggataataggaattcatttctgtt<br>tcattctattatatgcacttgcatttttatcagacacatacattccttttaaaattaataagtcttggccctcaaataggaaaactggaaaagtc<font color="green"><u>NNNNN<br></u></font><font color="red">TTTTTTTTTTTCTTTTTTTTATTTATTTATTTATTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTAT<br>ACATGTGCCATGCTGGTGCACTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCCCTCCCCCGACCCCACCACAGT<br>CCCCAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCG<br>ATAGTTTACTGAGAATGATGGTTTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATAT<br>GTGCCACATTTTCTTAATCCAGTAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGG<br>AAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGG<br>AGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTT<br>TGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAA<br>GATTGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAG<br>AAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGA<br>GAATGGAACCAAGTTGGAGAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGA<br>ACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAG<br>AGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAA<br>CATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATG<br>CTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATG<br>CCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAAC<br>AATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAG<br>GAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAA<br>TCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCT<br>AACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATA<br>ATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCGCCAAGCAG<br>ACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGG<br>AAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTC<br>ACTCAAAGCCGCTCAACTCCATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACAAAATGAAGGCAGAAATAAAGATCTTCTTTGAAA<br>CCAACGAGAATAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCA<br>GGAAGGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAA<br>ATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGAC<br>CGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAAT<br>TACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAAC<br>CAGGAAGAAGTTGAATCTCTGAATAGACCAATAAGAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGAT<br>TCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATT<br>TTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATC<br>CTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATTCCTGGGATGCAAGGCTGGTTCAATA<br>TACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAA<br>CAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATAC<br>TGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGC<br>CAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTGTCTGTTTGCAGACGACATGATTGTTTATCTAGAA<br>ACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCTAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATA<br>CACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGAT<br>GTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAA<br></font><font color="green"><u>NNNNN</u></font>ccagtgatattcatgacacatcaccataaagagagtctctaatttcaaaacttcccttcatcctgtttccacaacacaggactagtacattcttc<br>aaggctagacaggttaactgaagtacactgcctacaagaaacacacatgtgtgttgactataagtatagtggtttatggagtcttagaaattatccagga<br>aataacatttataataacaacaatgacagcatacagatcctctgctgcaactctcccagagctcccacgaccatgacctataggtgtgcctcaggcctat<br>gtttgaaagcagtcatcctaaatggaaggttcagtgctattcaaggcttttataaggctgagcctgaagtcctcctctgtcccctccttctctggccttt<br>	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	5498	267	NA	intron:ADAMTS12:NM:030955:12/24	
0	chr5	125067945	125067946	2000435	0	+	1104685719313	AACATTCTGGCCTTTTGTGG 	TGTCTATGTTCTCTTTTAGTTCGATGA	LINE	L1	L1HS	caagagattataggcagaataatatgatagaatatataaggcttcaagaagtagggtgagactttttgaaaaattaagagatgtaaagacagccctgtaa<br>aagggacaattgagaaaaagtacacacatggcatcagaaaatttgcatgcccagaaaaggcttgagaagactttaagtctccatgttagactaattaatt<br>aagatcttcctccctttccatagaaccagtctgcaaaaactgggtgagtccctctcaacacccacaaagccccaattttaaacaaaagatcacaggaata<br>ccaggaaacatggaaacatggcccattaaaggaaacaaaataaatctataaatacaaccctaacgaaacacaggactctaacttgacaaattatt<font color="green"><u>TTTTA<br></u></font><font color="red">GGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAA<br>ACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTT<br>TACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCAT<br>CCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACT<br>TGGAACCAACCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCAT<br>ATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGG<br>AATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATAT<br>ACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACT<br>TAGAGTATAATAAAAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAAT</font><font color="green"><u>TTTTA</u></font>gattgtcctaaatatactcatcgaactaaaagagaa<br>catagacaactaagcaaaattagaaaaacaatttataaatgaaataggaagatcaacaaagagagaaattatgaaaaagatccaaacaggcaatttgaaa<br>ctaaaaaatacaataactgaatttaaaattgtacttagaaggattcaactttgggcttaattaggcagaagaatcaatggacttgaggaaaaattatttg<br>aaattatcaagtccaaggagcaaaataacaataataaagaatataaacagagcctgagcgacttatggaacactgtcaagcagaccaatagatatattac<br>aagaattccagagagagaagacagaaagatagaggcagagagtttatttgataaaataa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1476	614	NA	intergenic	
0	chr5	137042694	137042695	2000436	0	-	1104685716642	ACCAGGGACAATTCCTACCC 	AGAAAGGGAATGGAGGGAGA	LINE	L1	L1HS	tctccggctgtcagctttttggtcagccaacgatacatgtgggaaggccagatgtggctctgggccagagatgttggtgctggtttgcaggactctcctg<br>agaaccgtgtggtcctgctgagctcagctgtggctggtccagagagcctcaatgtcctgtgcttgctcatggtgtggtggcttgtgtggtgactgctttt<br>tctatctgctgtttcttgggtgttaccaattgacaggggactgtggtccaaagacttctgggatcagaaagggaatggagggagaatccagtactttccc<br>agcttccagcccaagaataaattcttaccatccaaagaagattgctctcttgcttttattttaagatctttagcaatgaacac<font color="green"><u>GATAGTACTATTTTTTA<br></u></font><font color="red">CGGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTCTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACTGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAATGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAAACCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCGATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGC</font><font color="green"><u>GATAGTACTATTTTTTA<br></u></font>atctagtcttaaatatttccatagttaggaaggttttttgaatgtttaacttaaaaactaaaggctttttttgttttgatatacagagaagcaaagacca<br>gcttcttaccatgttgatgttgacagttggtttccttcgtaaaaaaactgactttcagatttgtcttgttatgtgtaaatattcctgagtttcaagatgg<br>acaacctttagttgtgaccatagtaatatcaataggctggtgtagagcaagtggggagccctttttgtccagtggaagatggaaaatattgtttataact<br>caatatttgagagtaaactgttaacgtttagggaatctggatgaaggtagaaatttgtatgagaattatttgggtctgaaatt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	6910	861	NA	intron:KLHL3:NM:017415:5/15	
0	chr5	109508172	109508173	2000437	0	-	1104685722750	CATGGTCAAAACCCAAGAAGA 	CCAAAACCTTCCTTTTAATTGC	LINE	L1	L1HS 	ttgaagttgtgctggattttgaattctagattttgaattattttaaccccttaaagatatttttcttcttctggtttccctttttctgttgaagtctgct<br>gacattttgattgatgcttctttttagataaactgtctttattctggctgctttttctttagttttagcagttttactgtgatacgtcttgaatctgtaa<br>cctacagtctttcaattccttatggaaaatcccattattattgctcctgcccctaatcactgtcttctccttctggaaccccaaaaagtgtaaacttata<br>ttacaactattttatacatcactttattcactattctctgtgttttccttcttttgttgctgcatgctttgatctggagatttccttt<font color="green"><u>GCAGGTCATTTC<br></u></font><font color="red">CGATGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACAAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAA<br>CAGAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCTGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTA</font><font color="green"><u>GCAGGTCATTTC<br></u></font>tgcaatttcttattcttcattcagctttgtatagtatattttaatacatccattaatccactacttgtattgttttcattctctttcaaaactctcattt<br>ttaaattatttccttgaacatttaagcagagttattttaaagtctatattttattgcttcttgacttgtatcagctatgattctgggactattgtatgtc<br>attcttcttgggttttgaccatgtcttctttttctctagcatatttgaacattttctgttgaatgcaagacattttaatctgacaaaggcctaatatcca<br>gaatctacaaagaacccaaacaaacttacaagaaaaaaacaaacaatcgcatcaacaggtgagccaaggatatgaacacttctcaaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	6806	726	NA	intergenic	
0	chr5	84275371	84275428	2000438	0	-	1104685646259	AGTTTTGTGATGTCACCCTCAA 	TAACTGGAAGACCAAAACACTTT	LINE	L1	L1HS	ccaccaaaaaaagtttaagataactatatgaagtactagatatattaattagcttaattatgataatcacaatgtatacatatattgaaacataatgtaa<br>actttaaatacacacacagattttaatggtcaattatacctcaataaagctggggaaaatacataaatatttgtgcaacaaatatgcaatcacaatcttt<br>ataataccaaataaaaagtagaagagatgtaaggaaacatagaaacacaataataactggaagaccaaaacacttttcatagagaaaagaagttgacact<br>aaaatattcatgaaaaaataaatatgcagaaataatcttaaacacaatttttaaaaagaaattattttaaggagaataagcctaaaagtgattaa<font color="green"><u>NNNNN<br></u></font><font color="red">CACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTG<br>GAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTA<br>GAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTCTAAAGACACATGCACACGTATGTTTA<br>TTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATA<br>CTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACC<br>AAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGG<br>GGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAAC<br>CTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>aataagaagtccaggaat<br>acatgaaaaagacataaaactttagtatgtattgagggtgacatcacaaaacttctagaaaataataagctttttaataaatcctattgagataattgtt<br>aatcaattgacaaaacatacaatttgattcaatcaccctgctgtgctgtcaaatatgagatcttattaattctatctaactatatttttgtacccattac<br>ccatatccacttcctcctctctactgttcttcccagcctctggttaccatcattttactcactatcttaatgagtcaaatctcacaccatacacaaggat<br>aaaaaccgaagagttaaaggttttagatgtaaaaaaaaatcatacatattttaggagaaaatatatgaattcttctt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1000	281	NA	intergenic	
0	chr6	102390465	102390466	2000439	0	-	1104685082558	TGCCTGGTGAAGTGACTGAA	TGTGAACAACTGCAACAGCA	LINE	L1	L1HS	ataatgaagtttttaaatttttaaaattcatttttaattctatacacaagagtatatcattagtgaagtttccaagcttcagaaatagagacaatcttga<br>aattgttcataggaaggaaaaatacaggccacatacaaaaggttaagaatcagaatgacctgtgaacaactgcaacagcagaaaaaggcaatggagtaat<br>gcctccccaaaaattcaacctataattcttcatggaagactcaatgtttttgggcatataaggtcttaaatttgtactcagcaacctttctcaggatgct<br>attacagcctttaacaaaatgagaaaataattcaagaaaaatgcaagaataagatccaggaaatggggctgtagcacagaagatcgg<font color="green"><u>GGGAATTTTCTTT<br></u></font><font color="red">CTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACA<br>AATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTA<br>CTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATG<br>AACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAGCACATGAAGAAATGCTCACCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTA<br>TGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTG<br>TTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGACAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTA<br>CTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACC<br>AACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATATTATGCAGCCATAAAAAATGATGAGTTCATATCCTT<br>TGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACGCCGCATATTCTCACTCATAGGTGGGAATTGG<br>AACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGTGGGGGTCGGGGGAGGGGGGAGGGATAGCATGGGAGATATACCTAA<br>TGCTAGATGACCCATTAGTGGGTGCAGCGCCCCAGCATGGCACATGTATACATATGTAACTAACCTGCCCAATGTGCACATGTACCCTAAAACTTAGAGT<br>ATAATAAAAAAAAATAATAATAATAATAAAAAAATTAATTTATAAAAAAAAAAATTAATTAAATAATAGGAGATACTTTGGAGCTAATTGAGACTATTTT<br>CTTGTTCCAAACTTTACAAATTGTTCCAACCCACCCATAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GGGAATTTTCTTT</u></font>aggagtatggtgaaaaaaagt<br>cctagctacttcagaggctagaggaaaacaaagccatgttgcagcaggaaaacatataacttcagggtatgcttccaaagacataaaagaaactcatagg<br>ctgggcgccatggttcacggctgtaatcccagcactttgggaggccgaggcgggtggatcacctgagatcaggagtttgagcctggcaaacatggtgaaa<br>ccccatctctactaaaatacaaaaattagccaggcgtggtggcgggtgcctgcaatcctagctgctcggggggctgaggcatgagaatcacttgaacccg<br>ggggatggaagttgcagtgagccgaggtcatgccactacaatcctgcctgggcgacagagtgagat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	2269	992	NA	intron:GRIK2:NM:175768:9/17	
0	chr6	69255467	69255468	2000440	0	-	1104685054532	TTGGCGTTACATGTCAGTCTTT	GACCGTGTTCCTTTGCTTTC	LINE	L1	L1HS	aataatgaaagggttaaattgtaaatttatataaatattttgtgggaatcatttgtatgtcagagttgtataatcctatgtttatttctgaacaaacaat<br>gtcaagaacttttcaagctgaccgtgttcctttgctttcttgtagctcagcaaaataagagataggcttttttggggggagaattaaatgaatttatttt<br>agttctaatttaaaattgtctttcagatagctctcctgaataccagtgcatctgtaaaattctgagttctgattttcatttgactcaatgtagttaccat<br>aattgtggtttccacagctaagttatgagaaaaaggaggttagggaggatggtatattgattaattagtttgagatttctgtg<font color="green"><u>TGCTTGTTTGAATTTCT<br></u></font><font color="red">ATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGAT<br>CATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAA<br>CTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGA<br>AGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAG<br>AAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCC<br>AAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAAC<br>AGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAG<br>GAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGG<br>CCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATG<br>GAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACA<br>GTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGA<br>TCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACT<br>GGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGC<br>ATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAAC<br>TAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCT<br>AATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAA<br>GAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACAC<br>CAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACT<br>AGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAG<br>GACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAA<br>TGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAA<br>ATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGA<br>CACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTA<br>GTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAA<br>AGAAAGGAAAAAAAAAAAAAAATAAATAAATAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TGCTTGTTTGAATTTCT</u></font>gataaaagcatctgttttcaattaaag<br>caggaagtcaggattagagatagagatatccaatatccatttattcatttattaaattaacatttatttattgcttctatgtgccaaaaacttctctata<br>tgttataattataaagactgacatgtaacgccaaatgagtatatttccaaagaaattacaatgttgaaagagaggagaataggagcaaagactaatcctc<br>acgtaattactattgttatatgctgtctaatgatgttttattcaatgatgaaccacataaattatataggtcccataacaccatattatttttgtagctt<br>ttttatgttgagataaacaaatacataaattgtactacaattgcctacagtattca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	2914	443	NA	intergenic	
0	chr6	148237502	148237503	2000441	0	+	1104685224895;AC208053	CCCCTCCCAAAATTCTTGTT ;NA	GCATTTGGCCGAGTAGTCAT;NA	LINE	L1	L1HS	atttcttcatcccattattgatctaaaatgtctctagctctctcgggtaaaggaagaacatgcccatgtgttgcatcaggtaattcctattattgaaaag<br>ctgtgttcaatctaaaatgaccttttcttggattttttgtcaagctagctttgcaacccacattaaattgaagcttttgtatgaggaccgagaagcccgt<br>tgttgcgtgggcaatgacattcttagggtgtttgctcaggacagccggccctctggccagctggtggcaggagctggagcatttggccgagtagtcattg<br>ctgctttttttaagtccacagcaaagacagggcattgggtctgaatttggactataaagaaggatggacaagtgctatgc<font color="green"><u>CACAGATGAACTTTTTCTTT<br></u></font><font color="red">TGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAAC<br>TCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAA<br>AAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTT<br>CAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAA<br>ATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATA<br>TCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGT<br>TCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTAT<br>CTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCAT<br>TCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTAC<br>AAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTA<br>GGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGG<br>AAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGA<br>CTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATA<br>ATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGC<br>TAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCAT<br>AAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAA<br>ATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCG<br>CAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAA<br>GGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAA<br>ACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTT<br>TACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCAT<br>CCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACT<br>TGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCA<br>TATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGG<br>GAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATA<br>TACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAAC<br>TTAGAGTATAATAAAAAAAAAAAAAAAA</font><font color="green"><u>CACAGATGAACTTTTTCTTT</u></font>agaggatctctgtgctttcataatcagaactcacagcatcagtacttttgaa<br>gatgtcgaacaagaattttgggaggggcagcatggagatttggacttttcacaaaaataaatttgataatcagcattggttttactttaattttagtggt<br>cctttatgattgtacatgtttatagtgacaaattacgtctgtgggattcgggcaggactttgaaaatggcctgattatgttaagctgcgttaagagtttt<br>ctgggaggctcacatgacttcactcagagaaaatgcccaaatggtaagagaggaactctcttaattgcctatttccgcatgttactgttttcttaagcaa<br>agattgttcatttacttaccttttaagt	Venter;OTHER	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	55;NA	2849;NA	202;NA	NA;NA	intergenic;intergenic	
0	chr7	69826626	69826627	2000442	0	-	1104685677975	CTTGGAGGCATTTGAAGGAA 	TTTACATGTGGGCCAATGAC	LINE	L1	L1HS	gtaaaaccccatctctactaaaaacacaaaaattagccaggtgtggtggcaggtgcccataatcccagctactcgggaggctgaggcaggagaactgctt<br>gaaccgggaggtggagcttgcagtgagtggtgatcgcaccactgcactccagcctgggtgacagacccagactctgtctcaaaaacccttctcaaattct<br>caaaaagtctacatgtatacttgcaaaggtctataaacaaaacgttagtttcaggaatacttgatctttatttcagaattttattttctaggtaatgact<br>cctaacaaatcagctttacatgtgggccaatgacctgttaaactaaaacccaaatacacaagtttgttttattgaaaatacataaa<font color="green"><u>GTAGCTCTGCTCTT<br></u></font><font color="red">CCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGA<br>ACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATACCACACTCTGGGGACTGTGG<br>TGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATA<br>TGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAGAACTTTGATGTTACAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>GTAGCTCTGCTCTT</u></font>gcgagtatttttctctacaactcagaaaggtaaattaaaacagtttctctggggaaaaaaatagagccttttacttccttcaaat<br>gcctccaagcactatgcacttgacaatctgtacagcgggcgcttcctgctgtctgtctgactcaaaaagaagagctcctttaacagagtggctaagagtg<br>caggctctaggggctttctgccaaatccaggtgtgccatttgccagcccactggtcctggggcagtttggcctctctgagcttccaagtgcccttggagg<br>tctatgatgaggtccgaaaaacctcccatcttcaaggtcttgggttgagagggtcaatgtggtgtctcccagaacaaccatgaaacttagaatccaaagg<br>t	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	594	181	NA	intron:AUTS2:NM:001127231:6/18	
0	chr8	5816693	5816694	2000443	0	-	1104685046825	TTCAGCCTCAAAACAAGTTCC	TCTCTTAAAACAACCTTACCACCTG	LINE	L1	L1HS	aaacgctttttggttctaacatacaatagggcattggtctgaagtgatgtcacccagctcgcagaagggaaagaacctgaggacattgggtctatattgg<br>ccaagggccgggaaacagagcggtcatagatggagtgtattcagcctcaaaacaagttcctaggggcgctcacagaggcacctgggtgagccagtctcga<br>agtgtttttgtaaaatataacacaggtcggggagaatgaagccaaagaagtccacgttcagggatgccttcaaatctgaaaaggagtttcagtaactcca<br>agtttagtaagcgcccaggagccatgtgtgaggaattctataatctcagtcagcagatagacataaagtactggcaatctgcagaatggaagatt<font color="green"><u>NNNNN<br></u></font><font color="red">TGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATAT<br>ACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATG<br>TCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGCATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACA<br>TGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCACATATTCTCACTCATAGGTGGGAATTGAACAATGAGAT<br>CACATGGTCACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGCCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGA<br>CACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAA<br>AAAAAAAAA</font><font color="green"><u>NNNNN</u></font>acaggtggtaaggttgttttaagagattttgaagttatttcttttgttttctttcttgctttcttgtttgttttttgagatggagt<br>ctcactccatgtcgcccaggttggagtgcagtggcacaatcttggctcactgcaacctccacctcatggattcaagcaattctcttgcctcagcctccca<br>agtagccaggattacaggacctgccaccatgtctggatactttttttttttttttgtatttttagtagagatggggtgttaccatgttggccaggctggt<br>cttgaacccctgacctcaagtgatccgcccagcttgatctcccaaagcatagggattacaggcgtgagccactgcacctggcctgaagttatttctaata<br>gaagaaaac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	901	293	NA	intergenic	
0	chr8	87384156	87384157	2000444	0	+	1104685362558	TCAGGGTCCTATTCCTACCA 	AACCCCATTGAACTTAAGCAAA	LINE	L1	L1HS	atttttagtacagacagggtttcaacatgttggccaggatggtctctatctcctgacctcacgatccgcccatctcggcctcccaaagtactgggattac<br>aggcatgagccactatgctgggcctattattgctattttaaaattcattcaaataataaataaaaggttaaagtaaaaagtgcctcacttttaacttata<br>acacagtaaataatataggtagctacaaccaacattggtgaatgaggacccactttggggtcctcaataatctttaagagtgtaaagatttcttaagacc<br>aaaaagcttgagaaccacctatctagaggatatttatcagggtcctattcctaccatagacaagctgaaacaaagagaatcttgagcaaggaaac<font color="green"><u>NNNNN<br></u></font><font color="red">CACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>tgaatggaatgacatcactttgagtcagtagcatcctgacaaggcagctcaatgccatgagccc<br>atggttgtgtgtcctctgagcttctccagttcttgtccattctcaggcccagctttcctgaataaatttcctatctttccaataaattgactttgcttaa<br>gttcaatggggttaatttctgttgactgcaatcaaatcatgctaatgaacacaatgtttagtaatatcctttttaaagttgtgtctgaaatctttcattt<br>atagttcaaactcttttttgagttatttcctcaaactcaaggaggaaagttgttgtgggggggccacagcaacaaatgggaaatttaattggaaaatcca<br>attctgctctccctgggctactttaaaccac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	377	250	NA	intergenic	
0	chr9	32453888	32453889	2000445	0	-	1104685683105	GGAGGAATAAGGGATGAACG 	GAAGCAGCCTAGCTCCACAC	LINE	L1	L1HS	gtgctttgataagggtttggggtttgggtttgagcatcctggtccctgtatatgggttttaacggaaggaaggaactctgcagaacagagggcaaaagct<br>tggagctctttagggcaatctgcaagaacaggaaagggagagggatgagcagagtactgggagactgctttcttccccagcgccccagctgtactgtcca<br>ttgtctgtgtgtggcctgctgtcactagagcactccccatcccccgccccagaattctctggtcactctgcagccatcttaacatgtagacagcccagag<br>gtatccaagaactgatttccatggtggacgcttcaggatttggtggtgtttcattctggaggaataagggatgaacggtatgacagttgtggttg<font color="green"><u>NNNNN<br></u></font><font color="red">GGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACAT<br>GTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>cagaatgaggaggaagc<br>tgtttttctttcctcatggagcagagaataaagatggggtgaaagaaagttcattctgaacaaagaacttccaacatgcatacccatgactacacataat<br>taagatagtttgcttttctccacctcagtgtgtggagctaggctgcttctttagccacaggttgcatgggtgaaggtcagtatgccatagacttaactta<br>tgattggttgagcctctttacccagttattgatttttacttagttttaagtatagctgtaatagttttaacttattaggatttatacctattgcctagag<br>taacacttaaaatatttgagattattagtatttaattgaatttcagtatataattgaataccattataagtgaatttt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	392	222	NA	intron:DDX58:NM:014314:16/18	
0	chr8	119790884	119790885	2000446	0	+	1104685369726	GGAACAGGGGAAAGGTTTTG 	CTGGGAGTTGCTGTGGATTT	LINE	L1	L1HS	gccctgaaatatgtctttagctcatctccagttctttatagtttaaaaagcccgactatcttctttaacaacctcttcagtttcaagcccaatcatttga<br>agagatctacctttcacaaattggaaaaataagattttgaagtagtgtttacagcccatgtagactagaacaagaatagttaaaaaggtaagcatgagag<br>gccttttcagctgagtagcaccagtttgaaagtgaacatcagtatttctacttaaagtatgttaggttgtgtaggttatatggctttgggaacaggggaa<br>aggttttgaaaagataaatcagaggagattatacgggaagacttttattctgcagaaaaaaaagtatctgagtattatatttttt<font color="green"><u>CCCAGAAACTTCTTT<br></u></font><font color="red">TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACAT<br>GTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCCCTCCCCCGACCCCACCACAGTCCCC<br>AGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAG<br>TTTACTGAGAATCATGGTTTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATATGTGC<br>CACATTTTCTTAATCCAGTCTATCATTGTTGGACATTTGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAA<br>CTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAA<br>AACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAA<br>AAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCA<br>GTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATA<br>AAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAA</font><font color="green"><u>CCCAGAAACTTCTTT</u></font>cttgctaaagactatggaatcaa<br>aatccacagcaactcccagcatgttaagagaagagaccagaatttcagtgacattttaggattaggatagattaatgtcatctctgtgtcccaagagtca<br>caacatattgataaaacggtgatcaggatgccgttataaaatgacatcctgtgtaagtcagtgtggctactcacagaagatccccaacatggattggtga<br>gtccactggaaaaaggaaaacagtgtactttgtggctggtggttctgtagtcaaaggcatagtttcctggacaaacatgaagcctaaactgtattcacaa<br>ggaaaaatggcaaaagagaaagcccagatttaaaaggtagaagggaattgattgacacaaga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1131	155	NA	intergenic	
0	chr9	117123707	117123708	2000447	0	-	1104685429720	NA	NA	LINE	L1	L1HS	actcaacaagtgtataacgtttaaaagtcagcttcactgaggtatgtttacatgcaataaaacttaccaagattgagtgcatatttcaatgagtttagac<br>aaatgtatgtaaccacaactacaatagtaataatatagagcatttctatcactgcaaaaaatacccttgtctctgcaataaattccttctccactccctc<br>aggctcttggcagtgatttatctgtttctgtcactatagttttgccttttctaaaatttcacaaaattttaatcatagtgtgtagtcttctgactctggc<br>ttctttcacttagaataatgcattcattatgttgtgcatatcagtagttggttcatttttatttgcagaataatattctattgtat<font color="green"><u>AAGTGTGGCATATT<br></u></font><font color="red">TCTTGTAAATTTGTTTCAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTTGCCTGTT<br>CACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGGCTTTTGTTGCCATTGCTTTTGGTGTTTTG<br>GACATGAAGTCCTTGCCCAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTA<br>TGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATG<br>GCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCAT<br>TGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATC<br>ATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGG<br>ATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCA<br>TCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGG<br>GAATACCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCG<br>CACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAATTAAAAAAAAAAA<br>ATAAAAATAAATAAAAATGAAATTACAAAAAAAAAAA</font><font color="green"><u>AAGTGTGGCATATT</u></font>ttcttatccattcaccaattaatgaatatttaggtcatttcacttatat<br>tatgttatcagttattatgaataaagctgctgggaccattcaagtaaaaatctttgtgtggacagacgtttacatttctctagggtaaccacgtaggagt<br>ggaatttctggatcatattgtaagcatttgttgaacattataagaaattgccaaacttttccaaaatattgtgcattcccattagcaacatttgagtttc<br>cagttgttgcacttctcaccaaaacttaaaatcattttttaaaatcatagccgttgtaatggttgtgcagtggcatctcactatggttttaatttgtatt<br>ttcatgatgtctaatgatgcttaacatgtttccataa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DEC1:NM:017418:4/8	
0	chrX	129352962	129352963	2000448	0	-	1104685474628	GCAAAGGGATTTTCCAAACA 	AGGAGCAATAGGCCATACCA	LINE	L1	L1HS	tatataaatatatacagttctgtggcacataatgatgtttcagtcaacaatggaccacgtatatgatggtggtcccataagattataatactgtattctt<br>actgtaccttttctgtgtttagatatatttagatacacaaatactttctgtgtttagatatatttagatacacaaatatttagatacacaattgttacca<br>ttgtgtaataattacagtatccagtacagtaacaagctataggtttgtagcctaggagcaataggccataccatataccccagatgtacagtaggctata<br>ccatctaggtttgtgtaagtacactgtgatgttcacacaatgacgaaattgcctaatgatgcatttcttagaacgtatctctatcatt<font color="green"><u>AAGAGATATGTG<br></u></font><font color="red">TTGCAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCA<br>ACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGG<br>ACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAAC<br>CACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTA<br>CACTGTTGGTGGGACTGTAAACTAAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATC<br>CCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAACAGCAAAGACTT<br>GGAACCAACCCAAATGTCTAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCAT<br>ATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGG<br>AATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATAT<br>ATCTAATGCTAGATGACACATTAGTGGCTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACT<br>TAGAGTATAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGATATGTG</u></font>ctatatatatttgcatgggtgtgcactcacacacacatgcacttttgtgttgtttggaaa<br>atccctttgcaaaatggtgcctgggttggaacagggagaggtagttaaggggcatgtttgtttcttttgaaattacatagatacattctcgctgtgaaaa<br>tatatgacaagttatccggcgcggtggcttacgcctgtaatcccagcactttgggaggccaaggcaggcggatcatctgaggtcaggaatttgagaccag<br>cctggccaacatggtgaaaccccgtctctactaaaaatagaaaaattagctgggcgtggtggcaggtgcctgtaatcccagctactcaggaggctgaggc<br>aggaaaatctcttgaacccgggaggcgg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1256	218	NA	intergenic	
0	chr10	87166265	87166275	2000449	0	+	1104685328458	NA	NA	LINE	L1	NCLI	cccattcacaattgtttcaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaggaagaactacaaaccactgctcagt<br>gaataaaagaggatacaaacaagtggaagaacattccatgct<font color="green"><u>ACCAAAAAAGAGCCTGCATTGCCAAGTCAATACTAAGCCAAAAGAACAAAGCTGGAGG<br>CATCACGCTACCTGACTTCAAACTATACTACAAGGCCACAGTAACCAAAACAGCATGGTACTGGTACCAAAAAAGAGCCTGCATTGCCGAGTCAATCCTA<br>AGCCAAAAGAACAAAGCTGGAGGCATCATGCTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAG<br></u></font><font color="red">ACCAAAAAAGAGCCTGCATTGCCGAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCATGCTACCTGACTTCAAACTATACTACAAGGCCACAGT<br>AACCAAAACAGCATGGTACTGGTACCAAAAAAGA</font><font color="green"><u>ACCAAAAAAGAGCCTGCATTGCCAAGTCAATACTAAGCCAAAAGAACAAAGCTGGAGGCATCACGC<br>TACCTGACTTCAAACTATACTACAAGGCCACAGTAACCAAAACAGCATGGTACTGGTACCAAAAAAGAGCCTGCATTGCCGAGTCAATCCTAAGCCAAAA<br>GAACAAAGCTGGAGGCATCATGCTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAG</u></font>tggctagc<br>catatgtagaaagctgaaactgggtcccttccttacaccttatacaaaaattaattcaagatggattaaagacttacatgttagacctaaaaccataaaa<br>accctagaagaaaacctaggcaataccattcagg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	121614171	121614172	2000450	0	-	1104685660357	NA	NA	LINE	L1	NCLI	aaattcaccaagataaaccacattctgggtcataaaccaaatagtaaactttatatataagaagaacacttctaaataatccatggattaaaaactctca<br>aaggaaagctttgaatattgtgaactaaaccaaaatgaaaactcaacataccaaaatttgtgggatacagccaaagacgtgcttagatgcattagctgcc<br>ttaattagaagagaaggtctcaagtgaataatttaagcttccacctatgaaactagaaatgaagagcaaaataaacccaaattaaacagaagaaag<font color="green"><u>AGGT<br>TTACAATTTTATTGATTTTTTTTTTAAAGAGCTTTGAGTTTCACTGATTTTTTCTTTTTTTTCTGTTTTCTATTTCATGGATTTTTGTTCTCTATTATTT<br>CTTTCTTCTGTTTAATTTGGGTTTATTTTGCTCTTCATTTCTAGTTTCATAGGTGGAAGCTTAAATTATTCACTTGAGACCTTCTCTTCTAATTAAGGCA<br>GCTAATGCATCTAAGCATGTCTTTGGCTGTATCCCACAAATTTTGGTATGTTGAGTTTTCATTTTGGTTTAGTTCACAATATTCAAAGCTTTCCTTTGAG<br>AGTTTTTAATCCATGGATTGTTTAGAAGTGTTCTTCTTATATATAAAGTTTACTATTTGGTTTATGACCCAGAATGTGGTTTATCTTGGTGAATTTACAT<br>GTGCACTTGAAAAGAATGTGTATTCTGCTGTCATTAGGTAAACAAATGTCAATTAGATCTACTTGGTTGACAGTGTTGTGTAGTTTTGTGTTGTTCAGTA<br></u></font><font color="red">NNNNNNNNNNNNNNNNNNNN</font><font color="green"><u>AGGTTTACAATTTTATTGATTTTTTTTTTAAAGAGCTTTGAGTTTCACTGATTTTTTCTTTTTTTTCTGTTTTCTATTTC<br>ATGGATTTTTGTTCTCTATTATTTCTTTCTTCTGTTTAATTTGGGTTTATTTTGCTCTTCATTTCTAGTTTCATAGGTGGAAGCTTAAATTATTCACTTG<br>AGACCTTCTCTTCTAATTAAGGCAGCTAATGCATCTAAGCATGTCTTTGGCTGTATCCCACAAATTTTGGTATGTTGAGTTTTCATTTTGGTTTAGTTCA<br>CAATATTCAAAGCTTTCCTTTGAGAGTTTTTAATCCATGGATTGTTTAGAAGTGTTCTTCTTATATATAAAGTTTACTATTTGGTTTATGACCCAGAATG<br>TGGTTTATCTTGGTGAATTTACATGTGCACTTGAAAAGAATGTGTATTCTGCTGTCATTAGGTAAACAAATGTCAATTAGATCTACTTGGTTGACAGTGT<br>TGTGTAGTTTTGTGTTGTTCAGTA</u></font>aaattcaccaagataaaccacattctgggtcataaaccaaatagtaaactttatatataagaagaacacttctaaa<br>taatccatggattaaaaactctcaaaggaaagctttgaatattgtgaactaaaccaaaatgaaaactcaacataccaaaatttgtgggatacagccaaag<br>acgtgcttagatgcattagctgccttaattagaagagaaggtctcaagtgaataatttaagcttccacctatgaaactagaaatgaagagcaaaataaac<br>ccaaattaaacagaagaaag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	 RI sequence unavailable	NA	NA	NA	NA	intron:C10orf119:NM:024834:1/16	
0	chr11	90775100	90775101	2000451	0	-	1104685402764	NA	NA	LINE	L1	NCLI	cacacatatatatacacacacatatacatatatacatacatatgtgtgtacatgtgtatatatacagtatgtatgtcactatatatgtgacataccgcat<br>atatatacatagacatatatacgtatatatgtgtgtgtgtatat<font color="green"><u>AAAACTATGAAAACCTAGAAGAAAACCTAGGCAATACCATTCAGGACATAGATATG<br>CGCAAAGACTTCATGACTAAAACACTTCTGCTCAGCAAAAGAAACTATCATCAGTGAACAGGCAACCTACAGAATGGGAGAAAATTTTTGCAATCTATCC<br>ACCTGACAAAGGCCAAGAGGAATTATATAAATATATTGTGACATACTGTATATATATATACATCTATGTATGTGTGTGTGTGTGTATATATATATATACA<br></u></font><font color="red">TTATATATATATATATATATATATATATATATATATATATATATATATATATGTCATATATAGTGACATACAGCATATATATACATAAACAGACATATAT<br>ACATCTATGTGTGTGTATATATGTGTGTGTATATATATATTTATATATAAAAAGA</font><font color="green"><u>AAAACTATGAAAACCTAGAAGAAAACCTAGGCAATACCATTCAGG<br>ACATAGATATGCGCAAAGACTTCATGACTAAAACACTTCTGCTCAGCAAAAGAAACTATCATCAGTGAACAGGCAACCTACAGAATGGGAGAAAATTTTT<br>GCAATCTATCCACCTGACAAAGGCCAAGAGGAATTATATAAATATATTGTGACATACTGTATATATATATACATCTATGTATGTGTGTGTGTGTGTATAT<br>ATATATATACA</u></font>gtttcacatttagtatttaatccatcttgagttgatttttgtgtaaggtgtaaggaaggtgtccagtttctgttttctgcatatagcta<br>gccagttttcccagcaccattaattaaacagggaatcctttctccactgcttgtt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	13055720	13055721	2000452	0	+	1104685703980	NA	NA	LINE	L1	NCLI	gcttgttatgaggattaataattgcaaagcacttagaacagggcctggcacatagtaagtgctctgtaagtgaatcttaacctaaaaaaggagaagaatg<br>atgaaaaatccaaattgaagcaactatttcaatatcataaaattactaatctatattcttttaaaatgtcaatgtcttaaaagacaagaaaaggctaaag<br>aattgattcaaattaaacgagactagagagacactacaagtaaatgtcatctgtgattatgggctggaccctgtgccaagaaaaaatactctaaagaaca<br>ttagtagaattaaattg<font color="green"><u>ACCTTGGGCGACTTATTTACTCTCTCTTTGCCTCAGGGCTGTCATCTGAAAAATGGAAATAATGATAATGTGTACCTCAGAGG<br>CTTGTTATGAGGATTAATAATTGCAAAGCACTTAGAACAGGGCCTGGCACATAGTAAGTGCTCTGTAAGTGAATCTTAACCTAAAAAAGGAGAAGAATGA<br>TGAAAAATCCAAATTGAAGCAACTATTTCAATATCATAAAATTACTAATCTATATTCTTTTAAAATGTCAATGTCTTAAAAGACAAGAAAAGGCTAAAGA<br>ATTGATTCAAATTAAACGAGACTAGAGAGACACTACAAGTAAATGTCATCTGTGATTATGGGCTGGACCCTGTGCCAAGAAAAAATACTCTAAAGAACAT<br>TAGTAGAATTAAATTGATTAAGTTAGCATACAGACTGTAGATTAGATAAAAGTATTATATCAATATTAAAGTTCCTGACATTGATAACTATATTGTGGTT<br></u></font><font color="red">TATCACAATATAGTTGGGCGAC</font><font color="green"><u>ACCTTGGGCGACTTATTTACTCTCTCTTTGCCTCAGGGCTGTCATCTGAAAAATGGAAATAATGATAATGTGTACCTC<br>AGAGGCTTGTTATGAGGATTAATAATTGCAAAGCACTTAGAACAGGGCCTGGCACATAGTAAGTGCTCTGTAAGTGAATCTTAACCTAAAAAAGGAGAAG<br>AATGATGAAAAATCCAAATTGAAGCAACTATTTCAATATCATAAAATTACTAATCTATATTCTTTTAAAATGTCAATGTCTTAAAAGACAAGAAAAGGCT<br>AAAGAATTGATTCAAATTAAACGAGACTAGAGAGACACTACAAGTAAATGTCATCTGTGATTATGGGCTGGACCCTGTGCCAAGAAAAAATACTCTAAAG<br>AACATTAGTAGAATTAAATTGATTAAGTTAGCATACAGACTGTAGATTAGATAAAAGTATTATATCAATATTAAAGTTCCTGACATTGATAACTATATTG<br>TGGTT</u></font>cttgttatgaggattaataattgcaaagcacttagaacagggcctggcacatagtaagtgctctgtaagtgaatcttaacctaaaaaaggagaag<br>aatgatgaaaaatccaaattgaagcaactatttcaatatcataaaattactaatctatattcttttaaaatgtcaatgtcttaaaagacaagaaaaggct<br>aaagaattgattcaaattaaacgagactagagagacactacaagtaaatgtcatctgtgattatgggctggaccctgtgccaagaaaaaatactctaaag<br>aacattagtagaattaaattga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	76011882	76011883	2000453	0	-	1104685536423	NA	NA	LINE	L1	NCLI	nnntattcaggagacccatctcacatgcagagacacacatagactcaaaataaagggatggaggaagatctaccaagcaaaaggaaagcaaaaaaaagca<br>ggagttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagcaggccattacataatggtaaagggatcaattcaac<br>aagaagagctaactatgctaaatatatatgcacccaatacaggagcacccagattcataaagcaagtccttagagacttacaaagagacttagaatccca<br>cacaataatagtgagagattttaacaccccactgtcaatattagacagatcaacgagacaaaaggttaacaaggatatccaggacttgaactcag<font color="green"><u>NNNNN<br></u></font><font color="red">CACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAG</font><font color="green"><u>NNNNN</u></font>gtggacctaatagatatct<br>acagaactctccaccccaaatcaacagaatatacattcttcttagcaccacatcgcacttattccaaaattgaccacatagtgggaagtaaagcactcct<br>cagcaaatgtaaaagaatagaaatcacaacaatctctcaaaccacagtgcaatcaaattagaactcaggattaagaaactcacccaaaactgcacgacta<br>catggaaactaaacaacctgctcctgaatgacaactgggtaaataacaaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagatac<br>aatgtaccagaatctctgggacacattttaagcagtgtgtagagggaaatgtatagcactaaatgcccacaagaga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	73110948	73110949	2000454	0	-	1104685238061	NA	NA	LINE	L1	NCLI	atccatgtccctacaaaggacaagaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacgttttcttaatccagtctatcgttg<br>ttggacatttgggttggttccaagtctttgctattgtgaatagtgccacagtaaacatacgtgtgcatgtgtctttatagcagcatgatttataatcctt<br>tgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaat<font color="green"><u>GTGCACCAGTTAGAATGGCGACCATTAAAAAGT<br>CAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAATGTG<br></u></font><font color="red">CA</font><font color="green"><u>GTGCACCAGTTAGAATGGCGACCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGAC<br>TGTAAACTAGTTCAACCATTGTGGAAGTCAATGTG</u></font>tggtatctcattgtggttttaatttgcgtttctctgatggccagtgatgatgaacattttttcat<br>gtgttttttggctgcataaatgtcttgttttgagaagtgtctgttcatatcctttgcccactttttgatggggttttttgtttttttcttgtaaatttgt<br>ttgagttcattgtagattctggatattagccctttgtcagatgagtaggttgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtag<br>tt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	60187903	60187904	2000455	0	+	1104685498754	NA	NA	LINE	L1	NCLI	acccaaatgtccaacaatgatagactggattaag<font color="green"><u>AAATGTGGCACATATACACCATGGACTACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTG<br>TAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAAC<br>AATGAGATCACATGGACACAGGAAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGGAGGGGGGAGGGATGGCATTGGGAGATATACCTAATG<br>TTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCGTGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTAT<br></u></font><font color="red">TAATTAAAAAAAAAAAAAAAAAAAAGG</font><font color="green"><u>AAATGTGGCACATATACACCATGGACTACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGAC<br>ATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGA<br>TCACATGGACACAGGAAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGGAGGGGGGAGGGATGGCATTGGGAGATATACCTAATGTTAGATG<br>ACGAGTTAGTGGGTGCAGCGCACCAGCGTGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTAT</u></font>tataata<br>ataaaagaaaataaatttaaaaaaaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	118345878	118345879	2000456	0	-	1104685465055	NA	NA	LINE	L1	NCLI	cctactcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccaccaaaaagtgggcaaagga<br>tatggacagacacttctcaaaagaatacatttatgcagccaaaaaacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaacc<br>acaatgagataccatctcacaccagttagaatggtgatcattaaaatgtcaggaaacgacaggtgctggagaggatgtggagaaataagaacacttttac<br>actgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctccgggatctagaactagaaataccatttgacccagcc<font color="green"><u>NNNNN<br></u></font><font color="red">TTTACTGGGTATATACCCAAAGGATTATAAATCATTGTGGAAGTCAGTGTGGCGATTCCTCCGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATC<br>CCA</font><font color="green"><u>NNNNN</u></font>gggtatatacccaaaggattataaatcatgctgctataaagacacatgcacatgtatgtttattgcagcactattcacaatagcaaagactt<br>ggaaccaagccaaatgtccaacaacgatagactggattaagaaaatgtggcacagatacaccatggaatactatgcagccataaaaaatgatgacttcat<br>gtcctttgtagggacatggatgaagctggaaaccatcattctcaggaaactatcccaaggacaaaaaaccaaacaccacatgttcttactcataggtggg<br>aactgaacaatgagaacacatggacacaggaaggggaacatcacactccggggactgttgtgggtgggggaaggggggagggatagccttaggagatata<br>cct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	183353746	183353747	2000457	0	-	1104685597347	NA	NA	LINE	L1	NCLI	atcaccactatcccacagaaatacaaactactatcagagaataaatacctctctgcaaacaaactagaaaatctagaagaaatggataaattcctggaca<br>catacaccctcccaagactaaaccaggaagaagttgaatccctcaatagaccataacaagttctgaaattgaggcagcaattaatagcctaccaatcaaa<br>aaaagcccaggaccagacaaattcacagctgaattctaccagaggtacaaagagaagctggtaccattcc<font color="green"><u>CAGGGATATTGGCCTGAAGTTTTCTTTTGT<br>TGTTGTGTCTCTGCCAGGTTTTGTTATGAGGATGATGCTGGCCTCATAAAATGAGTTAGGGAGGAGTCCCTCTCTTTCTACTGTTTGGAATAGTTTCAGA<br></u></font><font color="red">G</font><font color="green"><u>CAGGGATATTGGCCTGAAGTTTTCTTTTGTTGTTGTGTCTCTGCCAGGTTTTGTTATGAGGATGATGCTGGCCTCATAAAATGAGTTAGGGAGGAGTCC<br>CTCTCTTTCTACTGTTTGGAATAGTTTCAGA</u></font>atgaacaacgatgcgaaaatcctcaataaaatactggcaaaccaaatccagcagcacatcaaaaagctt<br>atccagcacgatcaagtcagcttcatccctgggatgcaaggctggttcaacatacgcaaatcaataaacgtaatccatcacataacaaaaccaatgacaa<br>aaaccacatgattatctcaatagatgaagaaaacgcctttgacataattcaacactccttcatgcttaaaactctctataaactaggtattgatggaatg<br>t	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	4410572	4410573	2000458	0	+	1104685051542	TTGGAGCTGCAGAGACATTTT	GGTCAAATTCATGTGGGGTTA	LINE	L1	NCLI	gttaccattttaaaatgccattcattggtattaatttcattcacagtgtcgtataaccatcatcacaatctatttccacgactttctcatcaccccaaac<br>agacactctgtacccatgaagcaatagctccctatggtctcccccagcccctgtagcctctaatctactttttgcctctttgaatttgacttccagctac<br>ctcacatgagtggaatcacacactgtttgtccttttgtgactgctttttaaatttagactaaggg<font color="green"><u>TCCAAATTCATCCCTGTTGGCGCATGTGTCAGAAT<br>GTCCTTCCTTTTTAAGGCTGGACAATACTTTACTGTACGGACAGACCACATTTTATTTATCCATCCTTCCATGGATGGACACCTGGGTTGCTTCCACCTC<br></u></font><font color="red">T</font><font color="green"><u>TCCAAATTCATCCCTGTTGGCGCATGTGTCAGAATGTCCTTCCTTTTTAAGGCTGGACAATACTTTACTGTACGGACAGACCACATTTTATTTATCCAT<br>CCTTCCATGGATGGACACCTGGGTTGCTTCCACCTC</u></font>tgggtacggtgaataatgctgctatgaatgtgagtgtactaatgtctgtttgagtctctgcttt<br>tagctctttcgggaacatacctaggcgtggagtggccggatcatagggtaactcttagcttaattttcgtacagaactgccagactgctgcctacaatgg<br>ctgcaccttttcacgttcagtcattttagcatctagaggttctcgtcacccagggcgaagccaagcttctaaccccacatgaatttgaccttctttagag<br>a	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	60	1292	1159	NA	intergenic	
0	chr5	13908996	13908997	2000459	0	+	1104685151646	NA	NA	LINE	L1	NCLI	ctgaatgactactgggtaaa<font color="green"><u>CATAAATCTTACATTTTAATGCCCATACTCTTCAATAGTGGGAGACTTTAACACCCCACTCTCAATATTAGTCAGATCAA<br>TGTGACAGAAAATTAACAAGGATATTCAGGACTTGAACTCAGCTCTGGACCAAGCGGACCTAACAGACATCTACAGAACTCTCCACCCCAAATCAACAGA<br>ATATACAATCTTCTCAGCACCACATCATACTTATTCTAATATCGACCACATAATTGGAAGTAAAACACTCCTCAGCAAATGCAAAAGAATGCAAATCATA<br>AAAAACAGTCTCTCAGACCACAGTGCAATCAAATTAGAACTCAAGATTAAGAAACTCACTCAAAATTGCACAACTACATGGAAACTGAACAACCAGCTCC<br>TGAATGCCTACTGGGTAAATAATGAAATTAAGGCAGAAATAAATAAGTTCTTTGAAACCAATGAGAACAAAGACACAGTATACCAGAATTTCTGGGACAC<br>AGCTAAAGCACTGTTTAGAGGGAAATTTATAGCACTAACTGCCCACAGGAGAAAGTGGAAAAGATCTAAAATCAACACTCTAACATCACAATTAAAAGAA<br>CTAGAGAATCAAGAGCAAACAAATTCAAAAGCTAGCAGAAGACAAGACATAACTAAGATCAGAGCAGAACCGAAGGAGATAGAGACATGAAAAACCCTTC<br>AAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAAGATCAACAAAACAGATAGACTGCTAGCCAGACTACTAAAGAAGAAAAGAGAGAAGAATCAAA<br></u></font><font color="red">AAGTACAATCAGTAAAATGATTCACTAGTAATTTAATTACATTTAACTTAATTTTAAGTAAAATAAAAAATGCTTCTCTCTCACTATGATGCAGAATATT<br>ACTCTGAACACCTACCTCATGCATCACTCAATATGAAAAGTAAACTAACAAGAACCACTCCACATAGATTTTCAT</font><font color="green"><u>CATAAATCTTACATTTTAATGCCCA<br>TACTCTTCAATAGTGGGAGACTTTAACACCCCACTCTCAATATTAGTCAGATCAATGTGACAGAAAATTAACAAGGATATTCAGGACTTGAACTCAGCTC<br>TGGACCAAGCGGACCTAACAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACAATCTTCTCAGCACCACATCATACTTATTCTAATATCGA<br>CCACATAATTGGAAGTAAAACACTCCTCAGCAAATGCAAAAGAATGCAAATCATAAAAAACAGTCTCTCAGACCACAGTGCAATCAAATTAGAACTCAAG<br>ATTAAGAAACTCACTCAAAATTGCACAACTACATGGAAACTGAACAACCAGCTCCTGAATGCCTACTGGGTAAATAATGAAATTAAGGCAGAAATAAATA<br>AGTTCTTTGAAACCAATGAGAACAAAGACACAGTATACCAGAATTTCTGGGACACAGCTAAAGCACTGTTTAGAGGGAAATTTATAGCACTAACTGCCCA<br>CAGGAGAAAGTGGAAAAGATCTAAAATCAACACTCTAACATCACAATTAAAAGAACTAGAGAATCAAGAGCAAACAAATTCAAAAGCTAGCAGAAGACAA<br>GACATAACTAAGATCAGAGCAGAACCGAAGGAGATAGAGACATGAAAAACCCTTCAAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAAGATCAAC<br>AAAACAGATAGACTGCTAGCCAGACTACTAAAGAAGAAAAGAGAGAAGAATCAAA</u></font>tgaatgactactgggtaaat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DNAH5:NM:001369:30/79	
0	chr4	190666477	190666478	2000460	0	+	1104685743648	NA	NA	LINE	L1	NCLI	attggccatactgtagagaatcatttctggactctcaactctattctgtccaactatatttttatgctggtattatactgtcttgaattctgtagcttgc<br>agaaagtttcaaaatcagaaaaatgtgaataatttaattttgttcttcacttttaagaatgctttagttatttgcgtctttgcatttccatatgaatttg<br>attatcagcttttccatttttgtaaaaaatccagaaaaattgtata<font color="green"><u>TTTCATTGAATCTGTAAATCAATTTGAGTAATATGCTTATCTAAGTAATATTAA<br>ATCTTCCACTTAAGAAATACAGAATGCCCTTCTATTTACACAGGTCTTCTTACACTTTTTCAACAAGGTTCTGCAGTTTTCACTGTGCAAGTTCTACGCT<br></u></font><font color="red">NNNNNNNNNNNNNNNNNNNN</font><font color="green"><u>TTTCATTGAATCTGTAAATCAATTTGAGTAATATGCTTATCTAAGTAATATTAAATCTTCCACTTAAGAAATACAGAATG<br>CCCTTCTATTTACACAGGTCTTCTTACACTTTTTCAACAAGGTTCTGCAGTTTTCACTGTGCAAGTTCTACGCT</u></font>ccttttgttacatttattcctaaaca<br>ttctcttttttaatgctaatgtaagtagaagtgttgttaacattttatttccagattgttcattgctagtgcatagaaatgcaactaatttatcatattg<br>atctcagctatacttgtatgttaggcctgttctttactggattccttaggattttctatatacaagttcatgtcatctacaaacacaagtagttttactt<br>cttcctttccaatatgattg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	 RI sequence unavailable	NA	NA	NA	NA	intergenic	
0	chr6	120867122	120867123	2000461	0	-	1104685230479	NA	NA	LINE	L1	NCLI	taataactttagaatgttgaatgtaattctcatagtaagcacaagaaaatagttttagaatatacacaaaagaaaatgagatggaaattaaaatatttca<br>ttacaaaaaaatcaactaaacataaaagagtaatgcaggaaatgaggggtaaaaaggtacaaggcatatagaaaacatatgtaaaatgacagaattaagc<br>ttcttcttgtcagtaatta<font color="green"><u>ATTAGCAGAGTGAGAATGGACTAATACAAATAGCTTTTTCCATCCTTTCATTTTTGACCTATTTTGCATCTTTGGATCTCT<br>AATTAGTCTTTTGTAGAACAAATATAGTTTGATAATTTTTTTATTCCATTCTGTCAATCTTTGTCTTTTGATTGGATGGCTTAATCCATTCATGTTTAAA<br></u></font><font color="red">NNNNNNNNNNNNNNNNNNNN</font><font color="green"><u>ATTAGCAGAGTGAGAATGGACTAATACAAATAGCTTTTTCCATCCTTTCATTTTTGACCTATTTTGCATCTTTGGATCTC<br>TAATTAGTCTTTTGTAGAACAAATATAGTTTGATAATTTTTTTATTCCATTCTGTCAATCTTTGTCTTTTGATTGGATGGCTTAATCCATTCATGTTTAA<br>A</u></font>aaaaacatacccgagactgggtaatttttaaaggaaagaggtttaattgactcacagttatgcagggctagagagtcctcaggaaacttataatcatgg<br>cataatgggaagcaaaaatgtcctgcttcacatggcagcgggcaagagaagtgcagaccaaaaagggaaaagctccttataaaaccatcagatctcatga<br>gtactcactatcatgagaac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	 RI sequence unavailable	NA	NA	NA	NA	intergenic	
0	chr7	51992684	51992685	2000462	0	+	1104685067157	NA	NA	LINE	L1	NCLI	ttgagcttaaataccaccaaaagaaaagggattttgtgtttctgggcaagtgaagcaagttatgggatggtaaccagaaacagtatggtaaacaagtgtt<br>tggtatgtggtaaggttttgtatgtagatttaagtcagtgccttctccattgaaaatagttcattatttaatctttcttcttaagacaagagtagtttac<br>acactactattacagtgttacactattctgtgttttcctgtgtgctattaccagtgagattt<font color="green"><u>CTTCAGATGATCTCTTCTTGCTCATTAACATCCTTTAC<br>TTCCAGATTGAAGGACTCCCTTTAACATTTCTTGTAGGACAGGTCTAGTGTCAATGAAATCCCTCAGCTTTTGTTCATCTGGGAAGGTCTTTATTTCTTC<br></u></font><font color="red">CTT</font><font color="green"><u>CTTCAGATGATCTCTTCTTGCTCATTAACATCCTTTACTTCCAGATTGAAGGACTCCCTTTAACATTTCTTGTAGGACAGGTCTAGTGTCAATGAAA<br>TCCCTCAGCTTTTGTTCATCTGGGAAGGTCTTTATTTCTTC</u></font>atgcttaaagagtattttcactggatatactattctaggttaaaagttttttttttttt<br>tccttcagcactttaaatatgtcacgctactgtctcctggattgtaaggtttctgctgaaaagtctgctgtcagacatattggagatccattgtatgtta<br>tttgtttcttctcttttgctgattttaggatcctttctttatcttgacttttgggaatttgattattaaatgcattgaggtagacttctttaggttaact<br>ttg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	25944366	25944367	2000463	0	+	1104685749366	NA	NA	LINE	L1	NCLI	tgtgagtcaattaaacctttttcctttataaattacccagtcttgagtagttctttatagcagtgtgagaatgaactaatacacttctacattatgcata<br>taatatatatgtagtcaatattggaacacttaaatatataaagcaaatattaacagaatagaatacagaaatagacagcaatacagtaggggacatcaat<br>accccacgttcaactatgtataaataatccagggagaaaataaagaaagacacagtatacttgaaccccatagtccaaaaggacctaaca<font color="green"><u>GCATATACAG<br>AACATTCCATCCAACACTTGTAGAATATATATTCTTTACAAGAGTACATGAAACATTGTCCACAATCAATCACATATTGGGCCACAAACAAGTCTTAAGA<br></u></font><font color="red">ACA</font><font color="green"><u>GCATATACAGAACATTCCATCCAACACTTGTAGAATATATATTCTTTACAAGAGTACATGAAACATTGTCCACAATCAATCACATATTGGGCCACAA<br>ACAAGTCTTAAGA</u></font>aattcaagaaaattaaaatcatatcaagtatcttttgcagccacatgatataaaactagaaatcagtaacaggaagaaaattggaaa<br>atatgcaaatgtgtaagtacacaagacactcctgaacaacatgttgttttcctgatagtgaataagtcttacaagatatgatggtttttaattaaattcc<br>aaacatacatataacacagaagaatatataacaaatatatgtgttcaccactatagattgagcagatgatgccatcttgctatataggttttatatattt<br>aaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	139688329	139692689	2000464	0	+	AC211783;AC203653	NA;NA	NA;NA	LINE	L1	L1HS	agacctcagaaataacaccacacatctacgacatctgatcttcaacaaacatgacaaaaacaagcaatggggaaaggctctcctgttaaataaatgatgc<br>tgggaaaactggctagccatatgcagaaaattgaaactggaaccttgccttacaccttatgcaaaaattaactctagatggattaaagtcttaaatgtaa<br>aacccaaaaccacaaacaccctagaagaaaccctaggcaataccattcagtacataggcgtgggcaaaggcttcataacggaaatgccaaaagcaattgc<br>aacaaaatccaaaattgacaaatggcatctaattaaactaaagagcttttgcacagcaaaaaaaaaaaaaaaaaattatcatc<font color="green"><u>AGAGTGAACAGGCAACC<br></u></font><font color="red">CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACAACCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGAAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAGTGAACAGGCAACC</u></font>tacagaatgggagaaaatgtt<br>tgcaatctacccatctgacaaaggtctaatatccagaatttacaaggaacttaaacaaatttacaagaaaaaagcaaacaaccccatcaaaaagttggta<br>aaggatatgaacagacacttctcaaaagaagacatttacatggccaacaaacatatgaaaaaagttcaacatcactgatcattagagaaatgcaaatcaa<br>aaccaaagtgagataccatctcacgccagttaaaatggcgattattaaaaagtcaagaaacaatagatgctggagaggctgtggagaaacaggaacactt<br>ttacacattggtgggaatgaaaattagttcaaccattgtgaaagacagtgtggtgattcctc	UCSC;UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr11	49082210	49084205	2000465	0	-	AC225590.1	NA	NA	LINE	L1	L1HS	gcaatgggctgattcttggagtacacaacgttcccggctccctcctcagctctgggggcagctggggcaagatgggcagggccatactgggcaggttcac<br>ctacaagtcccccagtggcaggcacaagcacaagtacctaaggagaatccagtgggtggccacctagtgcccatggaaagtggtttttcagaaacaattc<br>ttgaggctaaatctaatggcagaagtaagtccaaaaattagaagaaatttggaggagataatgaaactttgaattaagaaagaagaaattaaaaatgtga<br>aggacaaaatatacctgacagacatttaaagtttaatcacttaataacactgtgtagggcctgacaggatgtagaggttgaggaat<font color="green"><u>AAAACAGCGTCTAA<br></u></font><font color="red">TTCAATTAGGAAAAGAGGAAGTCAAAGTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCT<br>GATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATG<br>AGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCAC<br>TGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGT<br>AATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCC<br>CGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCAT<br>GGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGA<br>GAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACA<br>CCTTACACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACA<br>TAGGCGTGGGCAAGGACTTCATGTCTAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCAC<br>AGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTAC<br>AATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAG<br>CCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAAT<br>CATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACAGTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGG<br>AAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCT<br>GCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAA<br>GAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATT<br>CTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAACTGAACAATGAGATCACTTGGACACAGGAAGGGGAATA<br>TCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCA<br>GCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAATTAAAAAAAAAAA</font><font color="green"><u>AAA<br>ACAGCGTCTAA</u></font>actaaatcttagttttccagtatggataaggaggtaagtagtcatactgattcctgaaaccaggaagacaagatgagaataacttttca<br>agaacaaaacctgatgggttcttttggatgtgaggaacttgaagtggctgtaatttatattaagagcctgggtaatatctaggtggctttatgaatgtgc<br>aactcggaaaagaaaatagagcaagaaataaggatttggaagtcctaagaataaattgcctcttaaaatctggacatatataagaaaaaaaaaggaattc<br>aaacaatatttagtaaagtgaaaataacctgtatttattttaatttgttgactataacattctatgttatattattctgtactttctggaggtgact	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr6	91726243	91726244	2000466	0	+	AC207712	NA	NA	LINE	L1	L1HS	gtccagatgttctcatcatttagctcccacttgtgagaacatgcggtatttggttttctgggttagcttgctaaagataggacatggatggagatggagg<br>ccgttttccttaatctcattttcttttagaagtgttttaccacatatgctgtattgttttgtcatatactgaggcaaattaggttttcttttcttttata<br>cactctacttttgcatattgcttaacaatttctttatatagaattatatataataatatttatttctctttttatataaatagttcacctttatttagtt<br>ttctatttaaattcatagatttactctgcttatggtttgatgaggttcttaaagagtttagagttctcatcaaatttgagaaattt<font color="green"><u>TCAATATTATTATT<br></u></font><font color="red">TATTTTTTTTATTTTTATTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTG<br>CGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCCCTCCCCCGACCCCACCACAGTCCCCAGAGTGTGATATTC<br>CCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGA<br>TGGTTTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAAT<br>CCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACGTGTGCATGTGTCTTTATAGCAGCAT<br>GATTTATAGTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACA<br>ATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCGCATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGC<br>CATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCA<br>TAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGCACATCAAAAAGCTTAT<br>CCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAA<br>AACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCGACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATCGATGGGACGT<br>ATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACA<br>GGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAA<br>GAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTATGTCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCA<br>GCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATT<br>CACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATA<br>AAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCA<br>ATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTC<br>AATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAA<br>AACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAAT<br>GGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAAT<br>CAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAG<br>GACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTA<br>CCGTCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAAC</font><font color="green"><u>TCAATAT<br>TATTATT</u></font>ttaaaaaatagttttctgcctccctctgtgacttcaagtatatattttagactgctttgtattgtcccatagaaccctgatgctgagttcagt<br>ttcttaagtcttttttttcccaattcatagcttcattttgaagagtttccattgctatgctttcaaattcattgatttttttattgtagtatctaatctg<br>ctaattatatccagtgtattttttatgtcacatactatattttccctctttagaagttccatttgtgttttgtaatatcttctatttatctcctcatgat<br>attcatgctttcctctgtcttctctaatgtttaaagtgtacatatagtagtttcgacatccttgtctactagtgttatcttcactgtgatttc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr6	46418266	46418267	2000467	0	-	AC210987	NA	NA	LINE	L1	L1HS	aagactctaattatacatatttagaatactttatattgtcccacagacctctttttccctattttaaatctagtctagataaagtattagttttacagac<br>ttactctttggctgtgactctttgggattctgatccattattctagcccacatcaaaccataaaagttttctgtgagttcatctggtttctccttatgcc<br>tctctatggcaaattctttctcccacaactacaccaaggatgaaagcaaacatgtacttttgctcccatgggaagggcttaccactttatggaatttggt<br>tcatttaggctttcctttcatcagatctctgggtttgaaagaaaagctatgttctatatgtaggtcgtgttcttctggcttattcttt<font color="green"><u>CTTTCTTTCTTT<br></u></font><font color="red">CTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCT<br>GCACACACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCTTCCCCCCTCCCCCGACCCCACCACAGTCCCCAGAGTGTGATATTCCCCT<br>TCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGATGGT<br>TTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAG<br>TCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATT<br>TATACTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCACCACACTGACTTCCACAATGG<br>TTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCGCATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCATT<br>CTAACTGGTGTGAGATGATATCTCATAGTGGTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCATAAAT<br>GTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTG<br>GATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCACTCTGCTGGTAGTTTCTTTTGCTGTGCAGAAGC<br>TCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCAGAGA<br>ATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGA<br>TCAAGTGGGCTTCATCCGTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATG<br>ATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAA<br>TAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCC<br>TCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTC<br>AAATTGTCCCTGTTTGCAGACGACATGATTGTATATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCT<br>CAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGC<br>TTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAC<br>ACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCATGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCC<br>CCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACGAAAAAAGAGCTCACATTGCCAAGACAATCCTAAG<br>CCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGAT<br>ATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATGTCTACAACTATCTGATCTCTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGG<br>ATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAG<br>ATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACC</font><font color="green"><u>CTTTCTTTCTTT</u></font>ttttaagagacagggtctcac<br>cctatcactcaggctggagtatagtgacacaatcatagctcactgcagccttggactactggattcaagtgatcctctcacctcaacctcctgagtagct<br>gggactacaggcatgagccaccagtcctggctaaaacttccttcttgataaggtgatttatgtttccaccactggcattctacatctttctccacttcac<br>cttctataccagatgtctcagagacacagcacaaagaaaactccagccaaatgcacaataactattctttaatagagcatttgccctgatactctttttc<br>cttacttattcctattccagggctggttgacttagaaagtaacctaaaagtctttgtcccttttcct	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr5	67599975	67599976	2000468	0	-	AC210434	NA	NA	LINE	L1	L1HS	cataaaaaaagatattttgaagttagtgcctggcagggcccactggaaagtttaagctgaaacactgggactccagaggctgcccaagccaaatatttca<br>ttactgatggaagcagtttggaagtgtgtgaaaaactgccacttacctctaaaaatgtaatacaaagaaaagaaagtgtatatgcaaagtgtggatcagt<br>attatatcaagatgtttgtttgctaactgctgctgagtcaaagctgtttctgtctgaatctctctcaggacttcaagtgaaaaatgtatattctggtggg<br>caaatctaatcccaattcttttcttaaataaacctttaaagcatattcatactttatgcttgtaatgattaacaccctgaactt<font color="green"><u>TAAACTTATTAAGCTT<br></u></font><font color="red">GATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTG<br>AAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGC<br>ATGGAATGTTCTTCCATTTGTTTGTCTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGAT<br>TCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATCTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGAT<br>TTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATCA<br>TGTCATCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACAC<br>TATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCGGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTG<br>GGTTTGTCATAGATAGCTCTTATTATTTTGAAATACGTCCCATCAATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGG<br>CTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTG<br>CATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATG<br>TTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCCGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGA<br>TTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCTCCATGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGG<br>ACTCTTTTTGGTTGGTAAACTATTGATTATTGCCACAATTTCAGAGCCTGTTATTGGTCTATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGA<br>GTGTATGTGTCGAGGAATGTAAGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGG<br>AACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTA<br>ATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGA<br>TTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCA<br>AAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAAC<br>CTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAA<br>CAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTG<br>GCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAG<br>GATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACT<br>AGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCG<br>GCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATG<br>CAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACA<br>CCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGG<br>GGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCA<br>CAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAT</font><font color="green"><u>TAAACTTATTAAGCTT</u></font>tacgggtgacactacaacaa<br>atgatggcctgtgctctttgactaagcaaaaacaaagcaaaaaaaacaacgatgacttccttaattttgggacacatctgtttaatcagtagtaaaaaag<br>tgattagaagcagagctttaaagccaaagaggcttaggttttaatccttgctttgccacttactgaattcagtagtcttgggcaagttagttaacttgaa<br>tcccatttattcatctgtaaaatgggagtaattatgtgcagtaataaggattaaataatatatatatataaacatgacaggcatcgtgcccagtatgtag<br>aaagcacaaactaataggtagttattattgttagaattagtcatgtaatctttattattgttta	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:PIK3R1:NM:181523:1/15	
0	chr8	24982463	24982464	2000469	0	-	AC207459	NA	NA	LINE	L1	L1HS	aataataataaataacacattcaattgagtacttatcgtgtacaaggatgctctgctgagtgcagaggttgcagggactccctttaagctcctccaaccc<br>cttgcgttgcacagctgatctctttattgtctgtgtgacattggtggagggtcaggagggaggaaggaagtgtgtgggctttggacctaagcagactggg<br>gaatgaaaaatcaatattctcccaatctgacttctgaaccttacttctcctggaaaatgggaataacagtaactactcacagagttgtgatgaaaattac<br>ctgaaacaatacaaatatctagaagaaagtctgacacctaggagtcgctctacctgtcatagctgtttccaagctcaataaataatttgaatgtcttcta<br><font color="green"><u>NNNNN</u></font><font color="red">CCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTA<br>AACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATG<br>GATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTC<br>ATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAA<br>ATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCA<br>ATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAAT<br>TCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATC<br>ATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTC<br>TGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCT<br>AGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTC<br>TTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAA<br>GGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCATGGGTAGG<br>AAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAA<br>AAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACT<br>TCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAAT<br>GCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTA<br>GCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAA<br>AAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAAT<br>TGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAGAATGGGAGAAAATGTTCGCA<br>ACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGG<br>ACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAAC<br>CACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTA<br>CACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCC<br>CATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTG<br>GAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATA<br>TCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGA<br>ATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATA<br>CCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTT<br>AGAGTATAATAAAAAAAAAAAAAAAAGCATCCCCCCAAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAA</font><font color="green"><u>NNNNN</u></font>aataaacaattgctgag<br>gtttttcaccaggcgaacccttcagtagaagacacttctctcataattggcctgaccaagcagtaaatcaccgaatgccttcaaaaggccaacttacatc<br>tatgtgtttgtgggtggaccctgtattgtgccttctgctagggtaaggggtaagcagtgacctcaccaacaagcttccgtccttttcagcatgtgagctc<br>ttccaatgttgagcacagaataaccttaggtaattctacagatggtctcaggacagagcctatgagctcagagagcattggctgaaaaaatcctaacaag<br>taaccaggagtaacctcattacttagtgcaaatttctaaatgataaaaacatgttgatttttttaaaattcacattgacagat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chrX	143234663	143237654	2000470	0	+	AC216285	NA	NA	LINE	L1	L1HS	ttttaagagttctctagtcaatagctttttttttttcctttttcctttttcctttttcttctttttttttttttttttttttttttagcagagagtacag<br>ttcttcttagaaaattattagatcagattagggagatttcaaaatatttatcaccttttaatttctttaaagaaattctaatcagactgaatatcaccaa<br>gatcataggcaagaaggctttgaattaatatgttctacttgcacaggaaaatatatcagttcatttgagtgagggtactgtctcagaccccatgctctat<br>tgggcaatccacccttattgacagagttgccagatttggcaagtaaacatacaggatgcccagaaacatttaaatttcagataaacaacaaat<font color="green"><u>AAGAAGA<br></u></font><font color="red">AAAAAAAGAGACAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACA<br>AACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACCCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCT<br>GAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAG<br>AGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTC<br>TGATACCAAAGCCTGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAA<br>CCGAATCCAGCAGCACATCAAAAAGCTTATCCAACATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTA<br>ATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATATTCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAA<br>CTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGACAATATCATACTGAATGGGCAAAAACTGGA<br>AGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAG<br>AAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCC<br>AAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAAC<br>AGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAG<br>GAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGG<br>CCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATG<br>GAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACCACAAGGCTACA<br>GTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGA<br>TCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACT<br>GGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGC<br>ATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCACGTCCAAAACACCAAAAGCAATGGCAACCAAAGCCAAAATTGACAAATGGGATCTAATTAAAC<br>TAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCT<br>AATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAA<br>GAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACAC<br>CAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACT<br>AGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAG<br>GACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAA<br>TGATAGACTGGATTGAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAA<br>ATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGA<br>CACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCAGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAG<br>TGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACATGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAATCA<br>TTTATTAAAACAAAGTTTTTATATTTTTATAATAGTGTTTCACTTGATAAATATTTTTGAATAAATGAATGAGGAAATTAAAGAAAAAAAAAA</font><font color="green"><u>AAGAAGA<br></u></font>tatgcactatttggatgcaatttttgggacttaatatgtggtatacacttttattttaaaatatttatttacttgaaattcaactttaacttggtgtcct<br>atattttatctggcaattctattgctataagatggggcatctgttaaagaattgtatcttagctcatgagaggctgccaagccacctgaattattcctta<br>catcactcccctgaggcacacaatccttattcaccatgggctctacaataagcagtttattcaatacacatctacataaactgatagatcacttactaag<br>tactgggcactggggtcacacggtaaataaggcccactccccaccctggagaagctcactatccagggaaggaggtaaacctgtaaacaaatt	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chrX	95202956	95205500	2000471	0	-	AC206477	NA	NA	LINE	L1	L1HS	agtaaagctctcctcagcaaatgtaaaagaccacaaattataacaaactgtctctcagaccacagtgcaatcaaactagaactcaggattaagactcact<br>aaaaaccgctaaactacatggaaactgaacaacctgctcctgaatgactactgggtacataaggaaatgaaggcagaaataaagatgttctttgaaacca<br>acgagaacaaagacacaacataccagaatctctgggacacattcaaagcagtgtgtagagggaaatttatagcactaaatgaccacaacagaaagcagga<br>aagatccaaaattgacaccctaacatcacaattaaaagaactagaaaagcaagagcaaacattcaaaagctagcagaaggcaagaaataactaaaatcag<br><font color="green"><u>NNNNN</u></font><font color="red">GGAGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACAGGTGATTTCTGCATTTCCAT<br>CTGAGGTACCGGGTTCATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCC<br>TCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTG<br>CGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCAC<br>AGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCG<br>AACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCT<br>CTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGT<br>GGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCA<br>GCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGA<br>TAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAATGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCA<br>ACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAG<br>GCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAA<br>GGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAG<br>CGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTG<br>TACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCA<br>GATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAA<br>ATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAG<br>AGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAAAAAATA<br>CTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAATCACTAAACATGGAAAGGAACAACCGGTAC<br>CAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAG<br>GATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCC<br>ATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAA<br>CAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACGAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGAT<br>CAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTT<br>AGACTCCCACACATTAATAATGAGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAAC<br>TCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCC</font><font color="green"><u>NNNNN</u></font>caaatcaacagaatatacatttttttcagcaccacaccacacct<br>attccaaaattgaccacatagttggaagtaaagctctcctcagcaaatgtaaaagaacagaaattataacaaactatctctcagaccacagtgcaatcaa<br>actagaactcaggattaagaatctcactcaaagccgctcaactacatggaaactgaacaacctgctcctgaatgactactgggtacataacgaaatgaag<br>gcagaaataaagatgttctttgaaaccaacgagaacaaagacacaacataccagaatctctgggacacattcaaagcagtgtgtagagggaaatttatag<br>cactaaatgaccacaacagaaagcaggaaagatccaaaattgacaccctaacatca	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr1	182236309	182236310	2000472	0	-	AC206734	NA	NA	LINE	L1	L1HS	agaatggcgtgaacccgggaggcagagcttgcagtgagccgagatcgctccactgcactccagcctgggcgacagagcgagactcagtctcaaaaaaaaa<br>aaaaaaaaaaaatggggggctgaaatacactgtcctcttagaattgtacacctagcaacacttcctttcaataaggagagtcaattggagacattttcag<br>ataaacaaaaattgagataatttactagtaggtaaagaatcacctaaatccatgtacttcagggaaaaggtaaataataaagacttaagatgcagaaatc<br>tatgatgaacaaagaaaatgttaaacacgtgggtggatcttaaattaattgactttataaaatgagaacaatactgtgcaatttaa<font color="green"><u>GGGATTACAAAATC<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGTCTACAGCTCCCAGCGTGAGCGCCGCAGAAGATGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACTGTGCACGAGCCAAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAGGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCACCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGATACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACACAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAGAAAATTTAGACGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGCATGGAACCAAGCTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACGAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTCTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAGACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATATATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAAGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATCCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATG</font><font color="green"><u>GGGATTACAAAATC<br></u></font>aagataaaactaaaatatgacgtaacaatatttcatttgggatgggggtgactatagttaaatcattctaagttccttgtattgatttggagagggtaac<br>atttttattaaatttaaactttgtcaagttagatatacacatcttatttttatgatagccattaactactgagggagaaacataaaatgagaggaaaaca<br>tctcaatcaatcaatcaataagttaagaaaagaaaaattgaaaaaaagtaccaccactgcagaacatattttcttctctgacacacatggaccttttaca<br>aaaaatagacacatagaggccaaaaaacgagactgaaaagttgaaaggaattggcatcatatcacattctcagaatatatcacaac	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:GLT25D2:NM:015101:1/12	
0	chr11	40797865	40797866	2000473	0	-	AC207587	NA	NA	LINE	L1	L1HS	tttcattatatttcttatacctttttgttgaaaatcagacattttatagaatgtgctacagcaatgctagatttctatttttgcttttgtaaaatgaagt<br>ttgttgacattagtggttttttgtgtcttttttttaatttagtcacttttctggattaattctgaaatttgtcttccctctggtatgtagttgctgatgt<br>ttctgctcagatgttttaaaattaattcttgattttacttttaattctagcttcctagagtttttctatgtatcttgagtacgttaataattagccaatg<br>actgatcagaaattatgcttaaccatctcagaacagtaacccttcagttttctgcagatgcagtgtatggtgaatcacattc<font color="green"><u>AAATTTCAGCCAATTTTC<br></u></font><font color="red">TTTTTTTTTTTTTTTTTTTTTCTTTGTTAGGCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGC<br>AGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCCCT<br>CCCCCGACCCCACCACAGTCCCCAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGT<br>TTGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGATGGTTTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCAT<br>AGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGC<br>AATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATACTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGT<br>TCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTC<br>TCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGGTATCTCATTGTGGTTTTGATTTGCATTTCTCTGATGGCCAG<br>TGATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTT<br>GTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCAAAAATTTTCTCCCATGTTGTAGGTT<br>GCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGG<br>TGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCT<br>TTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAA<br>ATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTCAGGAAACCCATCTCACGTGCAGAGA<br>CACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGAC<br>TTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCAC<br>CCAATACAGGAGCACCCACATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACT<br>GTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACT<br>CTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAAT<br>GTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATG<br>GAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACA<br>TACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCC<br>TAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAAT<br>AGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAA<br>AAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAAC<br>ACCTCTACACAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAA<br>TAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGG<br>TACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGA<br>TACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCG<br>AATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATC<br>CAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTC<br>TCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGC<br>ATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAG<br>GAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAA<br>ATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGA<br>GAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAG<br>AACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCA<br>TACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAA<br>CCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTA<br>ACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGA</font><font color="green"><u>AAATTTCAGCCAATTTTC</u></font>aagccttccctggcatttattttctgct<br>ggacccttttgcatctcctgtgtttatgcacacagcttctgggttgaccaggactatgcggctagcttagaagctcctaatttttaactacatatatgta<br>tagcctcagtcaggaatatattttccccaaccatgcaatgtgaagctttgaaaatccattgtaatttctactaacaacaccaataggctttgtgggcatt<br>gctgccaacatcaactacaacaaaggtgccagtcctcctggctttactctgctctggctgaatctccatccagtggtggaagtggggaagtagcagaatt<br>ccggggcaagaacattataaaatcctcttcttacctgttcttctgcagtttttc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr6	162101257	162101258	2000474	0	+	AC221034	NA	NA	LINE	L1	L1HS	tgtccacctgaacataaaactgggttcagttttctgaagtctgaccaatgagctgacatactgatagctcactgaggtaaaagaagctttgtgatacaac<br>tgaaggatgtttatactttcagtgaacgaggcatagcagcctaaatgcaaccgattgaaccacaaataatacttctcaatcaaatggccttttatctttc<br>ttgtctctaaatatacccttttaccacacagctcgttcttaaaaaaaaaaaatccggtggtcacaatgtcaattgctaactttattttctatttatatcg<br>tccactttatgaatacccttttcctcaatttaattagttagtgtcactcacactttaactgggaacattgtaagactgagctgaattt<font color="green"><u>GAAAACAATGCC<br></u></font><font color="red">CGAGGAGCCAAGATGGCCGATAATGGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACC<br>AAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTA<br>CATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGT<br>GACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGG<br>ATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACC<br>ACACCACACCTATTCCAAAATTGACCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCAC<br>AGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACCCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATA<br>ACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGG<br>GAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACA<br>CATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGA<br>GCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAA<br>AGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGAT<br>ACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATA<br>GTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCA<br>ATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTT<br>AGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAG<br>TGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTAT<br>CTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATA<br>AGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCT<br>CACCACTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGCATTCAATTAGGAAAAGAGGAAGTCAAATT<br>GTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGA<br>TACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAA<br>AGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAA<br>CAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATC<br>AAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAA<br>AGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGA<br>TCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCC<br>CTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGA<br>TTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAA<br>AACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAAC<br>AGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAA<br>AAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATC<br>ATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAGCAACAGGTGC<br>TGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATC<br>TAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTT<br>TATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAA<br>TACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAA<br>CCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATAAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCG<br>GGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTA<br>ACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAGAAAAAGAAAAAACTAAAAATATAAGCAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>GAAAACAATGCC</u></font>acgatgtcagactgagtcacatcaatcttctaactgcccaccacagccacagcgcaactcaacgacacccacacgggtatctgc<br>gtcctggaattggacttttacatttttattttaatgaaaatgatgtattacatataagtaaaacaacacctttaaagatggaaaagaccctttttttcaa<br>gcctcaatttcagttctagtgggacagccaggtgggagggggtccctggagaaactccaaccagcctgccctctgcagtggggaggagcctggcccctcc<br>tcctcctgtgtggaacccgagattcaggctgagcgccggaagccgtctagcagggactctggcctagcgagagtccctgtttcccccttttcttcctttt<br>cacc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:PARK2:NM:013987:6/11	
0	chr3	89105037	89105038	2000475	0	+	AC226626	NA	NA	LINE	L1	L1HS	gtatgtctttaaaaaaaaaagttgtaaaggatgagttcatgtcctttggagggacatggatgaagctggaaaccatcattctcagcaaactatcgcaagg<br>acaaaaaaccaaacactgcatgttctcactcataggtgggaattgaacaatgagaacacttggacacaggaaggggaacatcacacaccagggcctgtcg<br>tggggtgaggggatgggggagggaaaacattaggagatatacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatat<br>gtaacaaacctacacgttgtgcacatgtaccctagaatttaaagtataataataataataaaaaaaaattcaaaaaaattgtat<font color="green"><u>AGAAGTGGCATGTTTA<br></u></font><font color="red">ATTTTATTTTTTTTTTTCTTTTTTTTTTCTTTCTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATAT<br>GTATACATGTGCCATGCTGGTGCACTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCTCCCCTCCCCCCGACCCCACC<br>ACAGTCCCCAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTC<br>TTGCGATAGTTTACTGAGAATGATGGTTTCCAATTTCATCCATGTCCCTACAAAGGATAGGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTG<br>TATATGTGCCACATTTTCTTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACGTG<br>TGCATGTGTCTTTATAGCAGCATGATTTATAGTCCTTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAG<br>GAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTG<br>TTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATT<br>TCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTA<br>AATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCACTCTG<br>ATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGGCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGA<br>AGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTAAATCTTTAATCCATCTTGA<br>ATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTT<br>CCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTC<br>TGTTTTGGTACCAGTACCATGATGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAG<br>GATTGACTTGGCGATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATG<br>GCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTGTCCT<br>CTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTG<br>CAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCT<br>CAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACA<br>AAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAG<br>CACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGA<br>CAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAA<br>TCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAG<br>AAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAA<br>CCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTC<br>TGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAAT<br>TAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAA<br>AACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAG<br>AATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAA<br>ATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAAC<br>AGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAA<br>CTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGACACCAAAGCTGG<br>GCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCA<br>CATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAAC<br>AGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAG<br>GTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAA<br>AACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGT<br>ATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGC<br>TGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCAT<br>GGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCA</font><font color="green"><u>AGAAGTGGCATGTTTA</u></font>a<br>agtaaagtaatttgattaaaaatattattaccagaggggcttcaagatggctcattagagacatcttttaccttttccaaggtaaaatccaaaattgtga<br>gtagataatttcacttcaaatacattgtccaagagaaaacactggaattcaacagagaaatgataggaaacacctaaagcaagtaaagggaagaaggcag<br>ctagcatgcttatctgatactggctgacagagattccccaatacagggaaagggtaagagagaggccccagaagtccacattccaaccactgactcttag<br>aatcctagccacaggagagtgtggctcatgggccctgaggtttatataaggacttctttggaagtcgcattgctcccaagatg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	78845553	78845554	2000476	0	+	AC210772	NA	NA	LINE	L1	L1HS	gtgagccgagatcgcaccacggcactccagcctgggtgacacagcaagactctgtctcaaaaaaaaaaaaccaaattaaagtataaagtaagtgccaaac<br>tttatttccaagttagaagtctctttgctcaacactccttactttagaacaaaatattttacattattttaaactatcaagatcattttgcactgttttt<br>aaagatacttgaaatgtctctaagttagaactgtaactttattatatagttttcttttgtatactgcaaatatctctttgattttagaaaatacctcttg<br>gatattagaagataaagttatagttctagctgatgaactgtaacttaattacatagctttttattggatgttatgtatataagata<font color="green"><u>AGCTAGGTTTTTCT<br></u></font><font color="red">TTTTTTTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGA<br>GAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCT<br>TTGTCAGATGAGTAGGTTGCAAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAA<br>TTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAG<br>GTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTC<br>AGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGAT<br>AGTTGTAGCTATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGC<br>CTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCATATG<br>AACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCCTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTT<br>TCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTCTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAA<br>GAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTCAATGGGAGTTCACCCATGATTTGGCTCTCTGTTTGT<br>CTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTG<br>AGACGATGGGGTTTTCTAGATAAACAATCTAGATAAAAATGTGCCACATTCTGGGACAAAAAATACCCTAACAATTTTTAAAAAGTAAATCATACAATGT<br>CAGCTGTCAGACCACAGTGGAATTAAAATAGAAATCAAAGGGGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCTAGCGTGA<br>GCGACGCAGAAGACGGTGATTTCTGCATTTCCAACTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCA<br>CCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCACACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCA<br>CCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGT<br>CCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGG<br>CTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGC<br>AGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTG<br>GAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGAC<br>ACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCAT<br>CTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTC<br>TCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAAT<br>TACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGA<br>AGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGT<br>ATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGAC<br>TATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGA<br>ACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAAT<br>TGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCG<br>GATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCA<br>AACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAA<br>GGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAA<br>TGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGAC<br>ACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGG<br>ATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGA<br>GACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCA<br>TAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAG<br>ACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAATCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATAT<br>ACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAA<br>ACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAA<br>TGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTC<br>AAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGTCACCCTAACATCACAATTAAAAGAACTAG<br>AAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAA<br>AATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGAC<br>ACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAA<br>ATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAAT<br>TGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTC<br>CTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAA<br>CCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCT<br>TATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGAC<br>AAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGA<br>CGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAG<br>ACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATGAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGA<br>AAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTTTATCT</font><font color="green"><u>AGCTAGGTTTTTCT</u></font>atagtcacaaatattcataacatctcagtaatttaa<br>aaccacaatcaccaagttcacagagattagctgggagtctgttccacactgtctactttaagagaaataaaaccctcttaccttacttagacatgctgtg<br>ttattattttaccattttattaaatataatttaccattacttaagataggacacctaaattaaattgctattcagaactactctttgtgttatcttggtc<br>aaatttcactattagtttagattcataaattgcactgtgaggatttctcagtttacatagttcaaaaactgcataagcattgaatattctcttccttgaa<br>gttttgatagaatttttcagcaaaaccacctattttaatagtttttaaaa	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr4	16553352	16559841	2000477	0	+	AC208145	NA	NA	LINE	L1	L1HS	tgggcttattcctgaaagggccacaagtgtgctttggtgttggcctcagacgacttctgcaactgccaaactactaatcacatgtctttccaatcaatga<br>ccacattgtcattaaaagcaagactaccaggcatcactgctattgcatttactttgaaaatacaaggctggctgtggaatgttaaggcaggtagaccatt<br>gggggatgggaagcatttccttagatggggaactgaaggaagggaaggtgttctgaggagaggggaaagcagaaataaaaactagaaaaaggaaaggtac<br>aagatgtaatgaggagtttctgagtaacctggtatattagtttgataggactcccatagcaaagtaccgcaaagtgggtggctt<font color="green"><u>AGAAATTTATTGTCTT<br></u></font><font color="red">TGGCCATTTTCCTCCGGAAGTGCGGATCCCAGCGGCGGTCCTGTAGCTGAGCAGGCCTGTGGCTTGGTTCTATGTCCCTGTGGCTATGTTTCCAGTGTCC<br>TCTGGGTGTTTCCAAGAGCGGCAAGAAACGAATAAATCTCTGTTTTAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCG<br>TGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGC<br>GCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGAC<br>GCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAATGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAG<br>GGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCC<br>AGGCTTGCTTAGGTAAACAAAGCAGCCCGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGG<br>GGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAACTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAG<br>CTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACT<br>GACACCTCACACGGCAGGATATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACC<br>CATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAATTGGAAACTCTAAAACGCAGAGCGC<br>CTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCA<br>AATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAAATTAGAAGAATGTATAACTAGAATAACCAATACAG<br>AGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAG<br>GGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGTGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGG<br>GACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGG<br>AGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATATTCCTCGAGAAGAGCAACTCCAAGACACAT<br>AATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGACGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACA<br>GCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAG<br>CCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCT<br>GCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAA<br>AATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTG<br>CAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAATCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAAC<br>TGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTG<br>CAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGCGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCT<br>CAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACA<br>AAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAG<br>CACCCAGATTCATAAAGCAAGTTCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGA<br>CAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAA<br>TCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAG<br>AAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAA<br>CCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTC<br>TGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCACAATTGACACCCTAACATCACAAT<br>TAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAA<br>AACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAG<br>AATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAA<br>ATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAAC<br>AGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAA<br>CTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTAATGAGGCCAGCATCATTCTGATACCAAAGCCGG<br>GCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCA<br>CATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAAC<br>AGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAG<br>GTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAA<br>AACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGT<br>ATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGC<br>TGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCAT<br>GGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCA<br>CTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGG<br>TAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGC<br>CCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAACCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCA<br>TGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTG<br>AGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTAC<br>ACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGAC<br>ATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCA<br>CAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTA<br>CAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACAGTTCTCAAAAGAAGACATTTATGCA<br>GCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAA<br>TCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTG<br>GAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGC<br>TGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTA<br>AGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCAT<br>TCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAAT<br>ATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACC<br>AGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATTTA<br>TTGTCTT</u></font>atagttgtggaggctagaagttcaagatcaaggtgtgggcaagattggttctttctgagagctatgaagaagaatctcgttgatgcctccccc<br>tagcttcttgtggtttgctggcaattttgggcattcattggcttgcagatgcatcacgtaatttctgccttcatcttcacatggcattctcgctgtctgc<br>atgtctgactccaaatttcccttttctatgaggacaccagtaatactggattagaggttcactcctctggtatgacctcatcttaattatgtctgcaatg<br>accctatttccaaataagatcacattctgaggtattggggcttaggaattcagcatatgtattttggggagcacagttcagcatgtgacat	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr11	92793799	92797782	2000478	0	+	AC213408	NA	NA	LINE	L1	L1HS	ataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatcgagaaaaccccattgtctctgcccaaaatc<br>tccttaagttgataagcaacttcagcaaactctcaggatacaaaatcaatgtgcaaaaatcacaagcattcttatacaccaataacagacaaacagagag<br>ccaaatcatgagtgaactcccattcacaattgcttcaaagataataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaaggagaac<br>tacaaaccactgctcaatgaaataaaagaggatacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcatgaaaatggccatac<br><font color="green"><u>NNNNN</u></font><font color="red">CCGGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGT<br>TCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCG<br>CAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCG<br>GCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATC<br>AAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCC<br>CACCACAGCTCAAGGAGGCCTGCCTGCCTCTGAAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGT<br>GTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAAACAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGACTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTACAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAATAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACGCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAAC</font><font color="green"><u>NNNNN</u></font>atagt<br>gttggaagttctggccagggcaatcaggcaggagaaggaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagacgacatg<br>attgtatatctagaaaaccccatcgtctcagcccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtacaaaaat<br>cacaagcattcttatacaccaacaacagacaaacagagagccaaatcatgggtgaactcccattcacaattgcttcaaagagaataaaatacctaggaat<br>ccaacttacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaaggaaataaaagaggagacaaacaaatggaagaacattc	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	 TSD unavailable	NA	NA	NA	NA	intron:CCDC67:NM:181645:13/14	
0	chr5	121604031	121608707	2000479	0	+	AC203611	NA	NA	LINE	L1	L1HS	atgtctcttttggagaaatatctattcaggtcctttgtcctttttaaaattgggttatttgtaagatccttacatattttggagattagactcttgtcag<br>atacatgttttacgaatattttctccccacttgtagtcttcctttacatttttgttgatatatatgtatattttcttgctgtgcagaagctttttagttt<br>gatgttgtcccatttgtttatttttgcttttgctgcctgtgcttttatgtcatatccaaaatattattgctaaggtaatgccaaggaacttttcctctat<br>gttttttttctaggagttttacagttctggtcttatgtttaggtctttaatccattttgatgagttgatgtttgtgtgtggcat<font color="green"><u>AAGAGATACAATTTCA<br></u></font><font color="red">ACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGC<br>CCATCAGACTAACAGCGGATCTCTCGGCAGAAAACCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAG<br>AATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCC<br>CTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAA<br>GAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAA<br>TTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACAT<br>AGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAAC<br>CGACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCAACCAATAC<br>AGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACA<br>TTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACC<br>CCAAATCAACAGAATATACATTTTTTTCAGCACCACGCCACACCTATTCCAAAATTGACCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAG<br>AACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCTGCTCAACTACATGGAAACTG<br>AACAACCTGCTCCTGAATGACTACTGGCTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGA<br>ATCTCTGGGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATC<br>ACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACA<br>CAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAG<br>AGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTA<br>CGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTCGACACATGCACTCTCCCAAGACTAAACCACGAAGAAGTTGAATCTCTGAATAGACCA<br>ATAACAGGCTCTGAAATTGTGGCAATAATCAATAATTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGG<br>AGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAA<br>GCCGGGCAGAGACACAACAAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCTTCAATAAAATACTGGCAAACCGAATCCAG<br>CAGCACATCAAAAAGCTTATCCACCATGATCAAATGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATA<br>TAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAA<br>ATTAGGTATTGATGGGACGTATTTCAAAATAATGAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCT<br>TTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAA<br>AGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTCTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCT<br>TAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAA<br>ATCATGAGTGAACTTCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACA<br>AACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCC<br>CAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAA<br>AGAGCCCACATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAA<br>CAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTAACAA<br>ACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGACATATGTAGAAAGCTGAAACTGGATCCCTTC<br>CTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTC<br>AGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTCAAGAGCTT<br>CTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGA<br>ATCTACAATGAACTCAAACAAATTGACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTT<br>ATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAAT<br>GGCAATCATTCAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCA<br>TTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAAT<br>CATGCTGCTATAAAGACACATGCACATGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTG<br>GATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACC<br>ATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGG<br>GGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGC<br>GCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAATTAAAAAAAAA<br>AAATTTAAAAAAAAAAAGAAAAAAGAAAAAAAATAAAAAAAATAAAAAAAAAAGAAAAGAAGAGCATTTGTTTGGATATATATGTATTTGAGCATGTCAT<br>TTATTTTTAAATTTTTCACAACTTTGTTGGACATCTAGTAATAATTAAATACTTTTTAAATTTAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGATACAATTTCA</u></font>ttcttt<br>tgcatgtgaatatccagtcttcctgacaccatttattgaagagactatcctttccccattgtgccttcttaatgtccttgttgaaaattaattgtttgga<br>tttattttggggctctctattctgttccattgataacttttcttattttcttatagagttatgaaagctcttggctataaaacagaatagctaaaattta<br>aaaatcactaatagtaggattaattagatactggccctacagctaagaaaacagtgtgaaaaaatggcactaaagttttacaagttgtccaaatgccaaa<br>gtaaaattaattaatgctagtctaatcagatacctttcacataatgtacttttcatatccagcccaaaatttaaatat	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr12	13437954	13437955	2000480	0	-	AC226693	NA	NA	LINE	L1	L1HS	tggcaaaccgaatccaccagcacatcaaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaaggctggttcaatatacgcaaatcaat<br>aaatgtaatccagcatataaacagaaccaaagacaaaaaccacatgattatctcaatagatgcagaaaaagcctttgacaaaattcaacaacccttcatg<br>ctaaaaactctcaataaattaggtattgatgggacgtatttcaaaataataagagctatctatgacaaacccacagccaatatcatactgaatgggcaaa<br>aactggaagcattccctttgaaaactggcacaagacagggatgccctctctcaccgctcctattcaacatagtgttggaagttctggctagggcaatcag<br><font color="green"><u>NNNNN</u></font><font color="red">GCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCA<br>TCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAA<br>CAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAG<br>GACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATA<br>TCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTT<br>AAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAAGAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATAC<br>TACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCTCATATCT<br>ACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAG<br>AAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAAACCCTAGA<br>AGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAA</font><font color="green"><u>NNNNN</u></font>cacaagacagggatgccctctcttaccact<br>cctattcaacatagtgttggaagttctggctagggcaattaggcaggagaaggaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctg<br>tttgcagatgacatgattgtatatctagaaaaccccattgtctcagcccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaa<br>tcaatgtacaaaaatcacaagcattcttatacaccaataacagacaaacagagagccaaatcatgagtgaactcccattcacaattgcttcaaagagaat<br>	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chrX	85491840	85496519	2000481	0	-	AC212998	NA	NA	LINE	L1	L1HS	tactatgcagccataaaaagaacaagatcatgtcctctgtagcaagatggatggagctggaggccattatcctaagcaaatcaatgcaggaacaaaaaac<br>caaataccacgtatgttcacgtataagtgggagctaaacattgtgtacacatggacagaaaaaagggaacaatagatactgaggcctacttgagggtgga<br>gggtgaggatcagaaaactacctatgaggtactatgcttattacctaggtgacaaaataactgtacaccaaatccccaaaacacacaatttacacatgga<br>ataaaattgcacatataccctctaaacataaaataaaagatagaaagagaatatttaaaatatagtgaaataactgtagtgttttatt<font color="green"><u>TTGTTTTGTTTT<br></u></font><font color="red">GTTTTTTTTTTTCATTTATTTTTTTTTATTTTATTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATA<br>CATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATACTATCCCTCCCCCCTCCCCCAACCCCACCACAGTC<br>CCCAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGA<br>TAGTTTACTGAGAATGATGATTTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATATG<br>TGCCACATTTTCTTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACGTGTGCATG<br>TGTCTTTATAGCAGCATGATTTATACTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCG<br>CCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCGCATCCTCTCCAGCACCTGTTGTTTCCT<br>GACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTCTTCA<br>TGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGACACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCA<br>GGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAAAGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCA<br>ACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGC<br>CCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAG<br>AATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCC<br>CTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAA<br>GAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAA<br>TTCTGCAATTAAAAGACACAGAGTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACAT<br>AGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAAC<br>CAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATAC<br>AGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAATA<br>TTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACC<br>CCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAG<br>AACAGAAATTATAACAAACTGTCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTG<br>AACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGA<br>ATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATC<br>ACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAACAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACA<br>CAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTCTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAG<br>AGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTA<br>CGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCA<br>ATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGG<br>AGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAA<br>GCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAG<br>CAGCACATCAAAAAGCTTATCCATCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATA<br>TAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAGGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAA<br>ATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCT<br>TTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAA<br>AGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCT<br>TAAGCTGATAAGCAACTTCAGCAACGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAA<br>ATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGACGTGAAGGACCTCTTCAAGGAGAACTACA<br>AACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCC<br>CAAGGTCATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAA<br>AGAGCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAAC<br>AGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAA<br>CCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCC<br>TTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCA<br>GGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTC<br>TGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCATCCTACTCATCTGACAAAGGGCTAATATCCAGAA<br>TCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACT</font><font color="green"><u>TTGTTTTGTTTT</u></font>tgagaca<br>gtgtctcgctctgtagcccaggctggagtgcagtgttgtgatctcggctcactgcaacctccgcctcccaggttggagcaattctcctgcctcagcctcc<br>tgagtagctgggactacaggcatgcgccatcaggcacggctaatttttgtatttttagtagagacggggggtttcaccaggttggccaggctggtctcaa<br>actcctgacctcaagtgatcagcccacgtcagcctcctaaagtgctgggattacaggcgtgagccaccacacctggcctgaactaactgtagtgtaaata<br>aatctaatatttcaatttaaaaataaaaatgattgtgaggcattagatgcattagaaccatgatgagaagaatcacagaaa	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:DACH2:NM:053281:1/12	
0	chr14	75281112	75281113	2000482	0	+	AC216134	NA	NA	LINE	L1	L1HS	tttttcatttgtgatataatagattgttccttggttttgtgtcttatgtctcaattctcttaattgttcatctcctgtgctaaaaatatacccactgaaa<br>taaatacacatttatttttctattgagggcatcttcagatttttccatatccttgaaatattggatgtgctctaaaaccaaggtttgggttaaatactag<br>cttagaaagtcacgtggacctcattctttctttcttctcttttctctctcaacccatagtgttcttttactgttctgttttctcctcttgcctttgagtt<br>tattagctttcgtctgttttccagggttccaggctgagattaattacagaaagtgggctatgaatttgagcttataaatcttt<font color="green"><u>AGAAAAATAATGATGTT<br></u></font><font color="red">TTTAGGGCAGGCCTGGTGGTGACAAAATCTCTCAACATTTGCTTGTCTATAAAGTATTTTATTTCTCCTTCACTTATGAAGCTTAGTTTGGCTGGATATG<br>AAATTCTGGGTTGAAAATTCTTTTCTTTAAGAATGTTGAATATTGGCCCCCACTCTCTTCTGGCTTGTAGGGTTTCTGCCGAGAGATCCGCTGTTAGTCT<br>GATGGGCTTTCCTTTGAGGGTAACCCGACCTTTCTCTCTGGCTGCCCTTAACATTTTTTCCTTCATTTCAACTTTGGTGAATCTGACAATTATGTGTCTT<br>GGAGTTGCTCTTCTCGAGGAGTATCTTTGTGGCGTTCTCTGTATTTCCTGAATCTGAACGTTGGCCTGCCTTGCTAGATTGGGGAAGTTCTCCTGGATAA<br>TATCCTGCAGAGTGTTTTCCAACTTGGTTCCATTCTCCACATCACTTTCAGGTACACCAATCAGACGTAGATTTGGTCTTTTCACATAGTCCCATATGAA<br>GGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAA<br>TGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGAC<br>ACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGG<br>ATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGA<br>GACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCA<br>TAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAG<br>ACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATAT<br>ACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAA<br>ACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCTGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAA<br>TGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTC<br>AAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAG<br>AAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAA<br>AATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGAC<br>ACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAA<br>ATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAAT<br>TGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCTGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTC<br>CTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAA<br>CCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCT<br>TATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGAC<br>AAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGA<br>CGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAG<br>ACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGA<br>AAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACT<br>TCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCC<br>ATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAA<br>ATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGAT<br>TCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAA<br>GTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACGGTAACCAAAACAGCATGGTACTGGTAC<br>CAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGC<br>AATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAA<br>AATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGC<br>AAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAA<br>CTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAA<br>ACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACAC<br>ATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGT<br>CAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTG<br>GCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGAC<br>ACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGC<br>ACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACT<br>ATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGG<br>GGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACAT<br>GTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAATAATAATAATAATAATAATAATAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAATAATGATGTT</u></font>gagggaatgaacagagggtaatgaggagtaatg<br>aaaacttaaaaaattttttttactattttcattttcttctccttagcgttgccgtccactctctgccagtgatgcggaaatgaaaaacctcgtgggctca<br>gcccgggagaaagggccagggaagttgggtggttctgtgcttggtctgtcaatggaggaggtaaagataagttcattttaggcttttgtgggttaacaca<br>gggtttagtgaaaattagtgagtgattgataatattcatgacaaactcatgtcttacattgaaaagagaaagattcaagattggagaaatgttttctcag<br>ggaagaacattttaaatggaattaatttctcccttcatgctactttcata	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:TTLL5:NM:015072:15/32	
0	chr10	78016611	78021583	2000483	0	+	AC217057	NA	NA	LINE	L1	L1HS	agtctaatatgttcttttaaagtttgaaaactatgctttttacttttatgtcattaactcatcatatgaatgtgattatggcagattggcatgagatagc<br>gattgcatttttttaatatggaaaaacagtggaaactgtctttctttccccactaattctaggctctttattctgtcctatttgtttgttggtccttggg<br>ccagcagttttaattactgtcactttattaagttttcatataaaattgggcaaatctctaacttgtttttcaataccctattaattattatttactttgg<br>ctgtcatttgtcttatataatgcaaataccttctcccattctgtggtttgtccctttactctcttaagaatgtttctggttaagt<font color="green"><u>AAAAATACTTAATTT<br></u></font><font color="red">TAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAG<br>CCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATA<br>AAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTTATTGGTGTACCTGAAAGTGATGGGGAGAATGGAACCA<br>AGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAG<br>ATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGG<br>GTTACCCTCAAAGGAAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAG<br>GAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGCTGAGAGATTT<br>TGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGCAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAA<br>AGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTT<br>TAAATATAAATGGACTAAATTCTGCGATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCT<br>CACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCT<br>GATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAA<br>ATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGAAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTT<br>TAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGGAGACCTAATAGAC<br>ATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTC<br>TCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCG<br>CTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTGCATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAAC<br>AAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCA<br>AAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGA<br>ACTGAAGGAAATAGAGACACAAAAGACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGA<br>CTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAGTAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAG<br>AATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGT<br>TGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAAACAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAA<br>TTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCA<br>GCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAAT<br>ACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCA<br>ATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCA<br>TGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCA<br>AAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACTGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATC<br>AGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCG<br>TCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAA<br>CAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGAAGTGAAGGAC<br>CTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATTG<br>TGAAAATGGCCATACTGCCCAAGGTAATTTATAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAA<br>GTTCATATGGAACCAAAAAAGAGCCCGCATCACCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTAC<br>AAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACA<br>ACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAA<br>GCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGCTTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAA<br>AACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCACGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATC<br>TAATTAAACTCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGACCAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGA<br>CAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACAC<br>TTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGCTATC<br>ATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGA<br>CTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATA<br>TACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACATATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAAT<br>GTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGAC<br>ATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGA<br>TCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGACATACCTAATGCTAGATG<br>ACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAA<br>AAAAAAATAAATAAAATAAAAAATAATGCTGTAAAGAGAGAGGAACAGAGACAGGGAGAGTAAATTTAAAAAAA</font><font color="green"><u>AAAAATACTTAATTT</u></font>tatgtactaaa<br>atttttaatcctttcttttattattagtgttctttcctgtttaaaacatctgtgctacctcaatctgacaaatatattctgtgatttttttctaaaaggt<br>tgattgttttgcctttcatatttagatctataatctatcttgagaatcaagactatttgtatgatataaggtagtgatcaagtatttttttcttttaaca<br>catgaatattcaataattcaacaccatttattaaaaagaccattctgtgatataatcttccccatagacaaagtacccatatatgtgtgggcctgtcttg<br>ggctctttattgtgttccatcagtctatctgactgtccttaaatacaagcacattatcttaactaatgtaacta	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	83041851	83041852	2000484	0	+	AC225384	NA	NA	LINE	L1	L1HS	tacaagaccctgtatttgactattagtagcatgtaaagaaactgcaaaaaatatttccataaatttcaacagcaaagtggccgcaggtacagcctcattc<br>tataatgttgttttctatcgagattcaggaacatggtatcctcttagtaaacacttggcatttgctggactgctctaggcaagcttgcagtgctttgcat<br>acaaattatcacattattccctgtgtattcctggtgaggtagatagaaataacgctgtttaacaaaaaggtcacaaatccctgtatgtatccagcaactt<br>ggtaagaacaaaaagtgaaccattcaatgtacagttaagaaaaaataatcacacaactctgtaaacttttatgtctgctgcattt<font color="green"><u>AAGAAGTAAAAAATG<br></u></font><font color="red">GTTGACAGTGGGGTGTTAAAGTCTCCCATTATTAATGTGTGGGAGTCTAAGTCTCTTTGTAGGTCATTGAGGACTTGCTTTATGAATCTGGGTGCTCCTG<br>TATTGGGTGCATAAATATTTAGGATAGTTAGCTCCTCTTGTTGAATTGATCCCTTTACCATTATGTAATGGCCTTCTTTGTCTCTTTTGATCTTTGTTGG<br>TTTAAAGTCTGTTTTATCAGAGACTAGGATTGCAACCCCTGCCTTTTTTTGTTTTCCATTGGCTTGGTAGATCTTCCTCCATCCTTTTATTTTGAGCCTA<br>TGTGTGTCTCTGCACGTGAGATGGGTTTCCTGAATACAGCACACTGATGGGTCTTGACTCTTTATCCAACTTGCCAGTCTGTGTCTTTTAATTGCAGAAT<br>TTAGTCCATTTATATTTAAAGTTAATATTGTTATGTGTGAATTTGATCCTGTCATTATGATGTTAGCTGGTGATTTTGCTCATTAGTTGATGCAGTTTCT<br>TCCTAGTCTCGATGGTCTTTACATTTTGGCATGATTTTGCAGCGGCTGGTACCGGTTGTTCCTTTCCATGTTTAGCGCTTCCTTCAGGAGCTCTTTTAGG<br>GCAGGCCTGGTGGTGACAAAATCTCTCAACATTTGCTTGTCTATAAAGTATTTTATTTCTCCTTCACTTATGAAGCTTAGTTTGGCTGGATATGAAATTC<br>TGGGTTGAAAATTCTTTTCTTTAAGAATGTTGAATATTGGCCCCCACTCTCTTCTGGCTTGTAGGGTTTCTGCCGAGAGATCCGCTGTTAGTCTGATGGG<br>CTTTCCTTTGAGGGTAACCCGACCTTTCTCTCTGGCTGCCCTTAACATTTTTTCCTTCATTTCAACTTTGGTGAATCTGACAATTATGTGTCTTGGAGTT<br>GCTCTTCTCGAGGAGTATCTTTGTGGCGTTCTCTGTATTTCCTGAATCTGAACGTTGGCCTGCCTTGCTAGATTGGGGAAGTTCTCCTGGATAATATCCT<br>GCAGAGTGTTTTCCAACTTGGTTCCATTCTCCACATCACTTTCAGGTACACCAATCAGACGTAGATTTGGTCTTTTCACATAGTCCCATATTTCTTGGAG<br>GCTTTGCTCATTTCTTTTTATTCTTTTTTCTCTAAACTTCCCTTCTCGCTTCATTTCATTCATTTCATCTTCCATTGCTGATACCCTTTCTTCCACTTGA<br>TCGCATCGGCTCCTGAGGCTTCTGCATTCTTCACGTAGTTCTCGAGCCTTGGTTTTCAGCTCCATCAGCTCCTTTAAGCACTTCTCTGTATTGGTTATTC<br>TAGTTATACATTCTTCTAAATTTTTTTCAAAGTTTTCAACTTCTTTGCCTTTGGTTTGAATGTCCTCCCGTAGCTCAGAGTAATTTGATCGTCTGAAGCC<br>TTCTTCTCTCAGCTCGTCAAAATCATTCTCCATCCAGCTTTGTTCTGTTGCTGGTGAGGAACTGCGTTCCTTTGGAGGAGGAGAGGCGCTCTGCGTTTTA<br>GAGTTTCCAGTTTTTCTGTTCTGTTTTTTCCCCATCTTTGTGGTTTTATCTACTTTTGGTCTTTGATGATGGTGATGTACAGATGGGTTTTCGGTGTAGA<br>TGTCCTTTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTAC<br>AGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCA<br>GCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAAC<br>TACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGAC<br>ACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTG<br>ACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAA<br>GGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATA<br>AAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACT<br>ACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATC<br>TCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTAC<br>CAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCA<br>TTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGC<br>AAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAAT<br>GTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAA<br>AAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAGCT<br>GGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAG<br>GAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAG<br>CCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACA<br>AACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTC<br>AAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAA<br>TGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCAT<br>ATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCT<br>ACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATC<br>TGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAA<br>ACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTA<br>GGCATTACCATTCAGGTCATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTA<br>AACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGG<br>GCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCA<br>AAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCA<br>CACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAA<br>ACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCA<br>AATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAA<br>CAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGAT<br>GAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACAT<br>GGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGAAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACAT<br>TAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGTAAAAAATG</u></font>agttataaaagaataacggatgctttcaaatttatgtaagaggtaatagttttttatgataaatatccaaa<br>tacattatctacacactatgaaagttggcaaaatatgcatatctataacacaaagaaataacttgtgtttgcacagacagactttttgtttattgagtag<br>ccagatcattcagtgaaacattctgatctatcttattaaaaggtcaattacttaaataaatatttattaaatggttacttgttttcagtaattgctattg<br>gccccaaaaataagttgttgttcctaacttctaactgtccccttgccagtcacggagaggttaaaaatgtactttcaataaaagcaactttcttttgttt<br>cttttctttttttt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr3	146092774	146092775	2000485	0	-	AC214981	NA	NA	LINE	L1	L1HS	aggcttttcatgtggaaagatgcagcttgattagagaagaaagtgcatggttttaggatgcagatgtataccgactagaatgcagacagcagtcaatgta<br>tattgactagaatagacttgtctattaaaaatctgctaatatttattttaaagaaaaatatatctcaaaatacttacaactggaggctcccagaaacatc<br>atcaactatgtatgttgtgagcactgtgaaagcaaataacaaaagcactgttgtgactattaagatgattatatttaggagtcaaagaagtcaacaattt<br>tgatataaccagagtgctgtggaaaagtaattgaggcacctgacttaaacctgaggccatggaaattagaattttaattccataggat<font color="green"><u>AAAGAATGACCA<br></u></font><font color="red">CCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATC<br>TGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAGCAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCT<br>CCTCCTCCAAAGGAATGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATT<br>ACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAA<br>GTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTA<br>TCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACT<br>ATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAA<br>CTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATT<br>GTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGG<br>ATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAA<br>ACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAG<br>GAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAAT<br>GAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACA<br>CAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGA<br>TGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAG<br>ACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCAT<br>AAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGA<br>CAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATA<br>CATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAA<br>CTATCTGTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAAT<br>GACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCA<br>AAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGA<br>AAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAA<br>ATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACA<br>CAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACACAAATAAACTAGAAAA<br>TCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATT<br>GTGACAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCC<br>TTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAAC<br>CAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTT<br>ATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACA<br>AAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGAC<br>GTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAATCCGGCACAAGA<br>CAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAA<br>AAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTT<br>CAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCA<br>TTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAA<br>TAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATT<br>CAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAG<br>TCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACC<br>AAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCA<br>ATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAA<br>ATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCA<br>AGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAAC<br>TACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAA<br>CAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGGCACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACA<br>TGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTC<br>AGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGG<br>CGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACA<br>CATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCA<br>CATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTA<br>TCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGAACACAGGAAGGGGAATATCACACTCTGGG<br>GACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATG<br>TATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAATGACCA</u></font>gataatcaa<br>tagtattataggtgcatactgacatgaagaacatgagaatagatacacacacacacacacacacacacacacatacacacagacacacacatgaaggaag<br>actaaataccatggaaaaataggggaaaatgtaccagtcattagcattgaggtatccttgagatatcatattatttattacatattacttttggaaaaaa<br>aatttagccttcactagggtatgtgaaactgagtccacaagccaagttgtgcccaaaacagaaacaaagacactgcactcttaagttcattttgtctcag<br>cattcttattttatttggcagatagaaaattatgtgtaatttcctaattcccaatccttgctcagtctcttgccttttc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr4	98322842	98322843	2000486	0	-	AC225317	NA	NA	LINE	L1	L1HS	agtttcaattacctacttggataacagttttactttaagcttcaagctgagctcagtattatgtaaatctgtaagtgccatggtgttttgttttagctca<br>atttgagaagtacagactttagaattgtccattttcaagaaagtgtcttctaagagccattctttgtgactgtggattaacaacaacatataaagaaagg<br>atgcaggtcacctttgaaatagccttgttttctcttaccaaaatagctttattcatgaaatgatagaacaaacatagtcactgcctaatggtgtgtctgg<br>agtttattccttctggtgggttcttcgtctcgctgacctcaacaatgaagctgcggaccctcacagtgagtgttacagctctt<font color="green"><u>AAAGATTGTGTGTCCGG<br></u></font><font color="red">GAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTCCTGCATTTCCATCTGAGCTTTGAA<br>GAGAGCAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTG<br>GGAGGCACCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAAC<br>AAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAA<br>ACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGC<br>TGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGA<br>ATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGG<br>AGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAA<br>ATGAGCAAAACCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGA<br>AAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCC<br>TCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAACTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCC<br>TCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAA<br>TTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACC<br>ACCAGACCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCAT<br>CGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATAT<br>AAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGC<br>AGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAA<br>CAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATCACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTA<br>TGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACC<br>CCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACA<br>GAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAG<br>CAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCTGCTCAACT<br>ACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACA<br>CCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGA<br>CACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAG<br>GAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAA<br>AGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTA<br>CAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCT<br>CTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACC<br>AGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCAT<br>TCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCA<br>AACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATG<br>TAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAA<br>AACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTG<br>GAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGG<br>AGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGC<br>CCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAA<br>ACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCA<br>AGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAAT<br>GGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATA<br>TGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACGCTACCTGACTTCAAACTATACTACAAGGCTA<br>CAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATGTAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCT<br>GATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAA<br>CTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAG<br>GCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAA<br>ACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGG<br>CTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAA<br>AAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCAC<br>ACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAA<br>CTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAA<br>ATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAAC<br>AATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATG<br>AAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATG<br>GACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATT<br>AGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGATTGTGTGTCCGG</u></font>agtttgttccttcagatgttcagatgtgtccgggtttcttccttctggtgggttcatggtctcgctg<br>acttcaggagtgaagccgcagacctccacagtgagtgttacagctcttaaaggtggtgtgtctggagttgtttgttcctctcggtgggtttgtggtctcg<br>ctgacttcagcaatgaagccgcagaccctcatggtgagtattacagctcataaaggtagtgtggacccaaagagtgagcagcagcaagatttattggtaa<br>gaacgaaagaacaaagcttccacagcatggaaggggatctgagtgggttgccactactggctcaggtggccagcttttattctcttatttgatcccgccc<br>atgtccagctgattgg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr3	84516086	84516087	2000487	0	+	AC225230	NA	NA	LINE	L1	L1HS	attgctagtaaaaataaacagataaatagttccataaaataatatatgcataaacacaaaatcttagtacatttgccttaaaaattagcagtcaaatata<br>tttaatttatgctaattctacatataataatcagatataattcttttaaaggttaaagagctacaaaagaattgtcaatacaaaaatgttccaaaagatt<br>gcaaatattctgaaaggctataaatgagtgagaaaaataaatgataggcttttttgtcatattgtttctaatgggataccctgggaataatgtcgagact<br>gagctttgtaactccgtcattaatgaaataagagagaaataaatagggtatcactttaaatctgaaattttgttaaattaagttctatt<font color="green"><u>TAAAACAGATA<br></u></font><font color="red">AGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGCTTT<br>GAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGC<br>CTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGA<br>AGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAA<br>AAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGA<br>ATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAAACAAAGGCAAAGAAGTTGAAAACTTTGA<br>AAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAA<br>TGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAA<br>AAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAA<br>TGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACG<br>CCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGA<br>AAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACAT<br>TCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTACAGACAAGCAAATGTTG<br>AGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCCGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCA<br>AAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAAT<br>ATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAA<br>ACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCC<br>TAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAAC<br>TATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATG<br>GGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACC<br>TAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAG<br>TAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTACAACTCAGGATTAAGAATCTCACT<br>CAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCA<br>ACGAGAATAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGA<br>AAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATC<br>AGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGC<br>TAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTAC<br>CATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAG<br>GAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCA<br>CAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTA<br>TGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTC<br>AATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATAC<br>GCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACA<br>ACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTG<br>AATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCA<br>GGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTATATCTAGAAAA<br>CCCCATCGTCTCAGCCCAAAATCTCCTTAAGCGGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATAC<br>ACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATG<br>TGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAAT<br>CAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACT<br>ACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAAC<br>TATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCA<br>TATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATA<br>TGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCC<br>TAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAA<br>ATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTAC<br>TCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGA<br>ACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTAT<br>GAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGT<br>TGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTAC<br>TGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCA<br>ACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTT<br>GTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAA<br>CAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAAT<br>GCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTA<br>TAATAAAAAAAAAAAAAAAAAAAAAGAATACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TAAAACAGATA</u></font>aagattacaatgagacttaacctacata<br>aaaataaattaaggtactaaatggcaaaatgttagcaaacaacttggtttcatgtggactctatgcataatcacaaatgcaatctaaagtaatatttctt<br>ttatatttatttcaaataaatattgacttagtgtctctgatttagtagaggtgatggatccatatgagtcccttagaatttggattgtattattttgttt<br>ctttatttgaacatagtcttctttaagaatatctgatcaaagacagcaaggtgtataactacttttactacagttttagagttcttcatcctgtagtcaa<br>cccatttcttttccaaagagtagtgatggtcatatgaattaattaaaaaatggattcagtc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chrX	98150959	98150960	2000488	0	+	AC203607	NA	NA	LINE	L1	L1HS	caaaagtatatataataatgatagcttaagggaattgaggttattctgatttgaaaaaaaatgtcttggtggtgacctaattacattttgcagaattatg<br>tcaggatttgaaagttttgactacgagagcagttatctttgttagttttcaagagctaggagagtcttaaatgtcttcaaatcattagccttagatacta<br>acatctggttaatggaaacttcccaacttgtagcccacttgaatctcttgtagacattggaaactaaatctgtgggaaaaatggacttacagaatttgaa<br>tatcaaatattcaaagaatttgtcttgctttttgattctctgtgcatatcactgtggcatacattaccatgctgaagataattcatt<font color="green"><u>GGTACTTATTCTT<br></u></font><font color="red">TTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCA<br>CTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCACTCCCCCCACCCCACAACAGTCCCCAGAGTGTGATATTCCCCTTCCTGTG<br>TCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGATGGTTTCCAAT<br>TTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCTATCA<br>TTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATACTC<br>ATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACT<br>AGTTTACAGTCCCACCAAAAGTGTAAAAGTGTTCCTATTTCTCCGCATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTG<br>GTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAACATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTC<br>TTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATT<br>AGCCCTTTGTCAGATGAGTAGGTTGCAAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTA<br>GTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAAT<br>GCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCC<br>AGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGA<br>TCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTAC<br>TGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTC<br>CATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGG<br>CCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTCTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTC<br>CTTAAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATCTGGCTCTCT<br>GTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTT<br>GGGCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTT<br>CTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCGGTTTTCAGGGAGTTCCCT<br>TTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCAC<br>GAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGTGGCAGCGAG<br>GCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCT<br>GCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGA<br>AGAGAGCAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACT<br>GGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACA<br>ACAAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAA<br>AAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGA<br>GCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAA<br>GAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCA<br>GGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAG<br>AAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTG<br>GAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACT<br>CCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTAC<br>CCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAG<br>AATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCA<br>CCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACC<br>ATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAAT<br>ATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGT<br>GCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAA<br>AACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATT<br>TATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACA<br>CCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTA<br>CAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCCCTCCTC<br>AGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCTGCTCAA<br>CTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGA<br>CACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATT<br>GACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGA<br>AGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAAT<br>AAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATAC<br>TACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAAT<br>CTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTA<br>CCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATC<br>ATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGG<br>CAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAA<br>TGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTA<br>AAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAAC<br>TGGAAGCATTCCCTTTGAAAACC</font><font color="green"><u>GGTACTTATTCTT</u></font>aaagatcttgaaagtcacagatttcagagcattgtatagacatccttattccccattcagaggc<br>atttcagtaactggctataagcatttcagtgtggcagttttaagagtatgtatattgatgtcagactatctgcattccaggcttaattttacccattact<br>acctgtgtgacctgggccaagttactttcctgaaaatgaggttaataaaaatatttacctcaagggttgtgatgattcagtgcgaatcatccatgaaaag<br>gaacaaacacattgtctggcagagattgaatgttgttttgttttgttacctattattattaggaggacagtgaaggggcaagtatggaggtactcctctg<br>aattttaaagtggataaaaatgt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chrX	143512327	143512328	2000489	0	+	AC208106	NA	NA	LINE	L1	L1HS	atttgtgagagagaaaaaaactaaaaaagaaaacatgtaactgctgctcaactacagaacaaaatatgcacatatacttttacatatgcatgcacacaca<br>cacacacacacacacacacacacactgcagcatggtctaatgagattagaaactttgaaattctgtttatagctctaccacaactgagatacttgatctt<br>atacaaatcacctcacttcactgaagtccattcacttgcctgaaggagagattttttaatacctagagaagccactgtgagtatagtataatgtaggcaa<br>aagcaatttatagattgaaaaccactataccatagtcaaatgttatgaattagtagtaagtgcaatatgtgttgaggtgaggat<font color="green"><u>GAAAATCCTGCTTGCC<br></u></font><font color="red">CAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCA<br>CTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATC<br>TCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAA<br>AGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAA<br>AAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGC<br>AGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGT<br>ATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCAT<br>CAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAAC<br>GCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGA<br>GGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTG<br>ATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATG<br>AAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAA<br>TCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCA<br>AGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAG<br>TTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAAC<br>CCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGT<br>GAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGG<br>AAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGC<br>TAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGG<br>ATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACC<br>AAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTA<br>CATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGT<br>GACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGG<br>ATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACC<br>ACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCAC<br>AGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATA<br>ATGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCACTCAAAGCAGTGTGTAGAGG<br>GAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACA<br>CATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGA<br>GCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAA<br>AGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGAT<br>ACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATA<br>GTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCA<br>ATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATACTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTT<br>AGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAG<br>TGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTAT<br>CTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATGGATGGGACGTATTTCAAAATAATA<br>AGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCT<br>CACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATT<br>GTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGA<br>TACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAA<br>AGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAA<br>CAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATC<br>AAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAA<br>AGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGA<br>TCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCC<br>CTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGA<br>TTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAA<br>AACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAAC<br>AGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAA<br>AAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATC<br>ATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGC<br>TGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATC<br>TAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTT<br>TATTGCAGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAA<br>TACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAA<br>CCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCG<br>GGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTA<br>ACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTGTAAAAAAAAAAAATTATAAATAAA<br>ACAAAGAAGAATATGTGAGAGGAGCTGAATGTGCCCCATAAAGCCTAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATCCTGCTTGCC</u></font>tattca<br>gtcactatgttgaatacctttgtagcctgaaatcgaattagaagttgcatacatacgcacataaggaaaaaaatatttcttgtttgaaatggttttatct<br>ttcaagataatgccttctacgagtgtgggtagaagagtggacagaacagtgattacctgtgtttaagaatggcgtatgagggtatatgctacctaaatca<br>gatgccaaagtcagactggagggaggcaggactcaatctatagatcacatattttactaaatttgattaaattctcaacttatattttctcatattttat<br>gcacatttctaatctttaaagtatgcaagggtcttatattgtgcattttagagatgcagagatgagttcaggaaaaaa	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr7	96313838	96319930	2000490	0	-	AC209153;AC193157	NA;NA	NA;NA	LINE	L1	L1HS	aatgtcttataaatgaagtcatatagtatgtaacattttgagcctggcttctttcccttgatacagtgcctctaagtttcatctaagttgatgtgtcaat<br>agtttgttcctttttatcaatgagtagtattcaattatatggctgtaccatagtttgtttatccattcacctgttacaagaacaggtttttttttttttt<br>tccccctgggcgattttgaatactgtacaggcttttgagtgaacatacatttttgtttttctgagataaatactcaggaatacaaatgctgggctgtatg<br>ataactgcatgtttaacttcataagaaactgccaaactattttccagagtggctgtaccattttgcattccctccaacagtgtat<font color="green"><u>GAAAGTTCCAGTTGC<br></u></font><font color="red">GAGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCACTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATACTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCTCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCACGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCTGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTTAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCAGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAGAATTGTAAAAAAAAAAATTATAAATAAAACAAAGAAGAATAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAAAGT<br>TCCAGTTGC</u></font>tttgcatccttatcagcatttggttttgtcagtattattttcgctattctaataggtgcatagtaatgtttcattatggtttaaatttgca<br>ttttctaatatcgaataatattgaatatctctttatgtgcttatataccatttgtatatcatctttgttgaattgtctattgaaatcttttgcccatttt<br>tcaaaaatcaagtttttccttttactacagttgagcattgagaattcatcacataatctggatataagtttttgtcagaccatttttgcgaatattttct<br>cccagtcttcagcctgcatgttcgtcctctcaactttgcaaagcaaaagactttttaaattaatttttttactttttagataattgtagattta	UCSC;UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr17	65869005	65869006	2000491	0	+	AC207965	NA	NA	LINE	L1	L1HS	gacactatgtatttaacaagaggaaagatgattgggttaggaaagttgagcagttatttagaaatgagcacacgagctggggagacctctccagagaagg<br>cagtggagaatcaaagaatagagggttgtacaggagatgctttttgggaatggctgtttcaggtatcaattaaagtggaaaggtagggttgtttttgtaa<br>aaaagatccaagacaatggaggatttgcccacattagaacaggatgcaaactacaggacggcagaatgttacagaaacgaaaaatgtgtttcagagtgat<br>tggagttagcattctggacgtatttcttacagagttgactagcactattcattttccaccctccaacagttgctgaatgattttgtttt<font color="green"><u>AAGAAAAAATA<br></u></font><font color="red">AGGGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTA<br>GGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAG<br>GGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGATGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAAC<br>GGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGG<br>CGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTC<br>AAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGGCAGCAGGAACCTCTGCAGACTTAAGTGTCCCTGTCTG<br>ACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAG<br>CAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGG<br>AAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAA<br>CAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATG<br>ATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAA<br>AAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGC<br>AGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAA<br>GAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGG<br>AACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAAGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCA<br>CAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAG<br>GTCGGGTTACCCTCAAAGGGAAGCCTATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCT<br>TAAAGAAAAGAATTTTCAACCCAGAATTTCATTTCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAGAAAATACTTTACAGACAAGCAAATGCTGAGA<br>GATTTTGTCACCACCAGGCCTACCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAA<br>TGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATT<br>AACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACC<br>CATCTCATGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAG<br>TCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTAT<br>CCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGA<br>GACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAA<br>TAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAA<br>AGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAA<br>AGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACG<br>AGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAG<br>ATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGA<br>GCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAG<br>CAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCAT<br>CAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAAACAGGAA<br>GAAGTTGAATCTCTGAATAGACCAATAACAGGATCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAG<br>CCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGA<br>GGCCAGCATCATCCTGATACCAAAGCTGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAAT<br>AAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCA<br>AATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACC<br>CTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAAT<br>GGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGG<br>CAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCC<br>CATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACC<br>AACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGA<br>AGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAA<br>TATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACT<br>TTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTTACTTCAAACTAT<br>ACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCACATAT<br>CTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGT<br>AGAAAGCTGAAACTGGATCTCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAG<br>AAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATG<br>GGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCA<br>TCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACA<br>GACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAG<br>ATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGG<br>TGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGG<br>GTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAAACTTGGAACCAACC<br>CAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATATTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTA<br>GGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAA<br>TGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGGTAGCATTGGGAGATATACCTAATGCT<br>AGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAA<br>TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAAAATA</u></font>aacaaaaagtacttagcctcaaggaaaataacttagggattttctg<br>catcttgaaatgcatgcttgtttggaacaaacagccgataaaccaattctcttaattatacacaaactgcctcacaattatgtactaaccgaatcctgag<br>tggacttggtagacacttgctgcttatgaaagaaacactacgcagaggcaccgctcctcacttttcttaaagaaaaaaaatgcatgactttaaaaaaaga<br>gtttgaaaattctcagtgatcttgttccctcatttatttttccacaagctgtgtctaaattcaggcaaagttatcaacttaccatttaatgatatggtca<br>cttaaacaaagcataaccttaacagaccttcaattcaagcttg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	35732859	35732860	2000492	0	+	AC231951	NA	NA	LINE	L1	L1HS	aaaaaaatgaagtgtcgggggctcatgacattagtaaagtgtaagtattccatggtctgtgtcatgattaaacattcctacaaatgtataaaaaattatt<br>tgactttatactttcctgtaataagaaagaaacaatgcttagaatacctctttttgttctggaaatagcatattttactcttgggattttgttccaacct<br>atttatctagtgataaggaaagcttccagcttggagtggagtccaaagcaaaactagacctgtaagagaaacaggctgctgtaatacagtcctaaaacgt<br>catccatatgacctggcaggtcttaccatattagagtatgggtggtaggaaaacatccctagtggaatttatggcaaattcc<font color="green"><u>AAAAAAAAAAAAAAAAAA<br></u></font><font color="red">AGAGGTTGAGGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCATAAGACGGGTGACTTCTGCATTTCCATCTG<br>AGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCTCGAGCCGAAGCAGGGCGAGGCATTGCCTCA<br>CCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTGAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGC<br>TTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCGCGCTGATTGCTAGCACAGC<br>AGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAAC<br>TGGGTGGAGCCCACCACAACTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAACCAAAAAGACAGCAGTAACCTCTG<br>CAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAGGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTGGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTTGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTACAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCTAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATGTGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGACAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGACTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTTGGGACGGTGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG<br>ATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAA<br>AACTTAGAGTATAATAAAAAAAAATAAAAAAAAA</font><font color="green"><u>AAAAAAAAAAAAAAAAAA</u></font>aaagaatagcaatatagatccctagggccctggagcaaggccatttca<br>tctgcagaattaaattctagaccaatcaaaacagcatctagcactgtattttgtttcataaaggtgaaaaaaactaaccatgagacctcaaatgaccata<br>tgactaaatctgccattcatgagcataggtttgaaaagacccagcatcattctgtaatagaatggaagacacatccaggatttgacatgagtagtgtcaa<br>atactcatttgtacagataaactgtacaagcaaatgactcagaaacatttaatcaattaatgctgcattattacctcttccttagcccagaaaacaggca<br>cagtgttctggagaaaaatgcatatgccatactt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr13	51741775	51747795	2000493	0	-	AC208004	NA	NA	LINE	L1	L1HS	cgccttggcctcccaaagtgctaggattacaggcttgagtcaccgtgcctggccgagatcctcaattatagtggcagcatactgctttaggctccatgga<br>tgactaaactaatttcaaacatataatgctgtttactgtgaaatgccaactgaaagtcattgtttaattttatgtaatttacaatacttactatacctca<br>ataaaactataattattaagggctggcatcggttgctgagaggtggaaggagtacctctctgcagcgtgttagctcaggttcaaacaggacagggcctca<br>agttcagcagcttttcagaaaatggcctggatccccagcctgaatcatcatcccatggctggagaatgtggacaggttatttaattaag<font color="green"><u>AAACTAATGAT<br></u></font><font color="red">TGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAACAACGGCGCACCAGGAGACTATATCCCACACCGGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCTGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAACAGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATTTGAGAACGGGCAGACTGCCTCCTCAATTGGGTCCCT<br>GACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTAAGGGTCCTGTC<br>TGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGAT<br>GGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAATGCAGTTCCTCACCAGCAATGGAACAAAGCTGG<br>ATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAA<br>ACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTAAAAACCAAGGCTCGAGAACTACG<br>TGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGTGAGAAGGGAAGTTT<br>AGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATG<br>TGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACA<br>GAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCC<br>AGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATAT<br>TCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCA<br>AATGCTGAGAGATTTTGTCAACACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAAT<br>CATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACA<br>TAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACACATCAGTGTGCTGTAT<br>TCAGGAAACCCATCTCACGTGCAGAGACACACATAAGCTCAAAATAAAAGGATGGAGAAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTT<br>GCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAATAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAAG<br>AGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATT<br>AATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGAATACCCAGGAATTGAACCCAGCTCTGCACCAA<br>GCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAC<br>TTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAA<br>TCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTT<br>GAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAA<br>AGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAAC<br>TAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAAGATCAACAAAATTGAT<br>AGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATAC<br>AAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGACATGGATACATTCCTCGACACATACACTCTCCCAAGACT<br>AAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGAT<br>GGATTCACAGCCGAATTCTGCCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACT<br>CATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAAGCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAA<br>AATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTC<br>AATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAA<br>TTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATAT<br>CATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTT<br>CTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATC<br>TAGAAAACCCCACCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATT<br>CTTATACACCAACAACAGACAGAGAGCCAAATCATGAGTGAACTCCCATTCACATTTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGG<br>ATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAG<br>AATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAA<br>ACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCACGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCA<br>AACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCC<br>GCATATCTACAACTATCTGATCTTTGACAAACTTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCC<br>ATATGTAGAAAGCTGAAACTGTATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGGTGGATTAAAGATTTAAACGTTAGACCTAAAACCATTAAAA<br>CCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGA<br>CAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATATTCGCAACC<br>TACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACA<br>TGAACAGACATTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCAC<br>TATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACAC<br>TGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTACAACTAGAAATACCATTTGACCCAGCCATCCCAT<br>TACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCATTATTCACAATAGCAAAGACTTGGAA<br>CCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCC<br>TTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATT<br>GAACAATGAGATCACAAGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCAGTGGGAGATATACCT<br>AATGATAGATGACACGTTGGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAA<br>GTATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACTAATGAT</u></font>aaaccaagggctatgggaattaagaactatggctaaaaaagaaatgtttagagtgatgcaaaatggcc<br>gattaaaagcagctgcactccccagcactcaaggagaggaatgaaaaggggcaggtgaattcagcaccttcaactgagatacccaggttctcccattggg<br>actgactggaagaacagctcgccccatggagaatgaagaaaagtggagagagggtgtgatggcccagccgagagcagcgtggagccaaaggaacccccac<br>tcccagccaagggaagcagtgagtgattgtccaatcgtgctcaggaaacagtgcttctcctattgatctttgcaacccatggatcaggggatccccttgt<br>aagcccatgccaccagggcct	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr10	91707627	91707628	2000494	0	-	AC204956	NA	NA	LINE	L1	L1HS	tggtcagctgaaggtatttctgtgttccagactgactgagagggctctaggggctaaaaagtttgaggcagttttcctggaactacacacctgggagaaa<br>taatcagattgaacaccaactgacacccatgcctcagcattctcttttcgctagatccataccgtaagttattacagcaggattaatgttgggcaataat<br>aagaaacctctggagaacggtgaaataaggggaaccaaggaccagtatggaattgggacataagatttcctctgagagttaagctctaagggaactgaaa<br>cacagatgtgcaaagttaccttaagacagaaagcctcctaaaccaataacatttgactctaatctaaatgggaaaattatcccacct<font color="green"><u>AAAGAAAACAGAG<br></u></font><font color="red">GAATTATAGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCA<br>TCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACTGTGCGCGAGCCGAAGCAGGGCGAGGCATTGC<br>CTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATT<br>GCGCTTTTCAGACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCA<br>CAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTC<br>GAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGGCAGCAGTAACC<br>TCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAG<br>TGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCT<br>GTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAA<br>GATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGC<br>TGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTG<br>AAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACT<br>ACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAG<br>TTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGGCCAAATCTACGTCTGATTGGTGTACCTGAAAGTG<br>ATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAAT<br>ACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCA<br>GCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAA<br>TATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATCCTTTACAGACAG<br>GCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAA<br>AATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCAC<br>ACATAACAATATTAACTTTAAATGTAAATGGACTAAATTCTCCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTG<br>TATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGG<br>GTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAG<br>AGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACAC<br>ATTAATAATGGGAGACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACACAGGAATTGAACTCAGCTCTGCAC<br>CAAGAAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACA<br>TAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAA<br>GAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTC<br>TTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGA<br>GAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAAT<br>AACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATT<br>GATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCAATCCCACAGAAA<br>TACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAG<br>ACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCA<br>GATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTA<br>ACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGC<br>AAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGG<br>TTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACA<br>AAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAA<br>TATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAA<br>GTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAATAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTT<br>ATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGC<br>ATTCTTATACAACAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTT<br>ACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGG<br>TAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATT<br>GGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCT<br>GACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAA<br>TAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTGAATAAATGGTGCTGGGAAAACTG<br>GCTAGCCATATGTAGAAAGCTGAAACTCGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACC<br>ATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACA<br>AAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTT<br>CGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCG<br>AAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCA<br>AAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACT<br>TTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCC<br>ATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGA<br>CTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTT<br>CATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGT<br>GGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGA<br>TATACCTAATGCTAGATGACACATTAGTGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAGCCTCCACAATGTGCACATGTACCCTAAA<br>ACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAAACAGAG</u></font>acctcaaaaagactaatcgcagagactaattttgacactgtacaactaagag<br>agagagagtcctgattcaagaacgtgaggagattcacctacatagacaacatctgatttcaccatagtggaaatgtcagacatttagtacctaatgccac<br>aaaacaggggctggcaaactactgtccatgggccaaatctggctgaatcccattcttttaaataaagttttattggtaccacaggtgcatccatttgttt<br>acacatcatctatggctgcttttgcactacactatcagagttgagtagtcttgacaaaggttatatggcccacaaagcctgaaatatttactgcccagcc<br>ctttacagaagaagtttgccaacgcttgccataaa	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr11	109883105	109883106	2000495	0	-	AC210912	NA	NA	LINE	L1	L1HS	ctcagtggtcacaagggacagaaaccaattcgggctaactccagctcgaaggatgtttataaggtgagtgctgggcagcagctagggaagcaggcaggat<br>ggagccaggatagtccctgacatttatgtagcaggagctccatggccatcttgtcccggagctgagctggagtgaatccactccctccatttcccccatc<br>aatgagcctttcctcagagtcccaggaaggagagtttgcttatcctgactttgagcacttgcctgacaccaagactagggaaagacaggcatcccgatta<br>acattcccaccacagctcacacagtaggaaggaaaaaaaaaaaagtgtgccctgaggaagaggagagcgaggctgagggttctt<font color="green"><u>AAAACGTATTTACTTG<br></u></font><font color="red">GATAACTCGGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCC<br>ATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCACACTGTGCGCGAGCCGAAGCAGGGCGAGGCATTG<br>CCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATAT<br>TGCGCTTTTCAGACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGC<br>ACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCT<br>CGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGGCAGCAGTAAC<br>CTCTGCAGACTTAAGTGTCCCTGTCAGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAA<br>GTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCC<br>TGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAA<br>AGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAG<br>CTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTT<br>GAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAAC<br>TACGTGAAGAATGCAGAAGCCTCAGGAGCCGATACAATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAA<br>GTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGGCCAAATCTACGTCTGATTGGTGTACCTGAAAGT<br>GATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAA<br>TACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGC<br>AGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCACCCCAGAATTTCATTTCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAGAAAATACTTTACAGACA<br>AGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTACCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCA<br>AAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGTTGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGG<br>GGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACA<br>CATTAATAATGGGAGACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCA<br>CCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAAT<br>TGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAA<br>GACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCTGGGCAGAGACACAGCCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>CAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTG<br>GTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGGCAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTATCCCTGTTTGCAGACGACATGATTGTT<br>TATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACAACAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAACTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTCGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGAC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACAC<br>TTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>CATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATACCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGG<br>TGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG<br>ATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAA<br>AACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACGTATTTACTTG</u></font>agcaacactgaataagctacttacctgatctaagcctcagtttcct<br>cacatgtaaaatgggcatgctgttagtatttaccataaaaggttgttatgagaacttatcagataaaggagggcagatgcttattgagtgcccagctcaa<br>tgcatcttagttattgttgttaggagctccgattcttgattggcccaaacctttgttcagaggtgccccaccccctgtctggctgggctgctgtttccct<br>gcaggctctggaggggccgtgttgtcacggggtgatctggatcagcgtgcccacttatggcgcatggacaggctctgtggtcaccactcctgccaagttc<br>caacacagtaggggcagagacacctgctgtcatgaagc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr11	92509453	92515561	2000496	0	+	AC223418;AC208150	NA;NA	NA;NA	LINE	L1	L1HS	catggaaaagagctcatcatcactgatcattagaaaaatgcaaatcaaaaccacaatgagataccatcttatgccagtcagaatggcaattattaaaaag<br>tcaagaaataaaagatactggtgaggttgcagagaagtaggaatgcttttacactgtcggtgggaatgtaaattaggtcaactattgtggaagacagtgt<br>gcaattcctcaaagatctagaaccagaaatacgatttgacccagcaatcccattactgggtaaatacccaaaagaatataaatcattctattatagagat<br>acatgcatgagtatgttcagtgcagcacacttcacaatagcaaagacatggaatcaacacaactgcccatcaatgatagacta<font color="green"><u>aagaaaacgtggtacat<br></u></font><font color="red">TGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGG<br>TCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACATGGCAGGGTATTCCAACAGACCTGCAGCT<br>GAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAA<br>AACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACA<br>GAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCA<br>AAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGC<br>TCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGA<br>GAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGACTGGTGTAC<br>CTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGAT<br>TCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATG<br>TTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGT<br>GGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTT<br>TATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAG<br>CCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGAT<br>CAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATC<br>AGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAA<br>AAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAA<br>TTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGA<br>CTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCA<br>GCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAA<br>TTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACT<br>CAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATA<br>AAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATG<br>CCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAG<br>GCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATC<br>AACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATC<br>CCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACAC<br>TCTCCCAGGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGT<br>CCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAA<br>TCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAA<br>CATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATG<br>CAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAG<br>CCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACC<br>CACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATA<br>GTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACA<br>TGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAA<br>ATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCGTAATTGCTTCAAAGAGAATAAAATACCTAGGA<br>ATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCAT<br>GCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTT<br>CACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATC<br>ACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGC<br>CCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTG<br>GGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAA<br>CCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAA<br>CAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGA<br>GAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAA<br>AAGTGGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAA<br>TGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAAT<br>AGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGAGATTCCTCAGGGATCTAGAACTAGAAATACCATTT<br>GACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA<br>TAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAA<br>TGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCA<br>CTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGC<br>ATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATG<br>TACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAACGTGGTACATATACATAACGGAATACTGTGAAGCCATAAAAAGGA<br>ATACCACCAT</font><font color="green"><u>aagaaaacgtggtacat</u></font>taaaaaggaacaagatcatgtcctttgtagggacatggatggaactggaagccattatcctcagcaaactaat<br>aaaggggacacaaaaccaaacaccgcatgttctcacttataagtgggagctgaacaatgagaacatatggacacagggaggggaacaacacacactgggg<br>cctgtttgggggtggggtgggaggagggagagcattaggaaaaatagctaatgcatgctgggtttaatacctaggtgatgggttgacaggtgcagcaaat<br>caccatggcacgtttacctatgtaacaaacctgcatatcctgcacatgtaccctggaacttaaaataaaacaatgcacaacctttcccaaagaaagtttt<br>cttccagaat	UCSC;UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing;E: fosmid-end sequencing	NA; TSD unavailable	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr22	26785917	26785918	2000497	0	-	AC215719	NA	NA	LINE	L1	L1HS	gaatgagaacacttggacacagggtggggaacatcacacaccggagcctgtcgtggggttgggggatgggggaaggatagcattaggagaaatacctaat<br>gtaaatgatgagttaatgggtgcagcacaccaacatggcacatgtatacatgtgtaacaaacctgcacattgtgcacatgtaccttagaacttaaagtat<br>aataataacaaaaggatctttttaaaaaaaaaagttgagtactttcattaaatattagttctttcaataaatgttaaggaactaaatagtacaatattaa<br>ggaactaaatagtacaattaaaggacattgttaaatggattttttaaaaagcagaaccaaaatctctgatatttacctatagatt<font color="green"><u>GAAAATAAATGGGTA<br></u></font><font color="red">AAGATGTCTGAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>TAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAACGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGACCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACGTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAACGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCATATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGTGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAAAAAAAAAG</font><font color="green"><u>GAAAATAAATGGGTA</u></font>gaaaacgatataccat<br>gtaaacggtaatcatacaggtggctggagtgccttcagtcagattaaatattaatttaatatttaataataccaagagtattaccagaggtaaagaggga<br>catttcttaatgataaaagaatcaatttaccaagaagacattaaaagccataaatgtatatttacctagtgaccaagtttcaaattacatgaagcaaaat<br>ttgataaaattaaaaagaaacagatatttctgcagttgtatttggcaactttaacaccactctgtattgataaataatagctataattagaaatttatag<br>aataattagaaaaaatacaagccagtaaaacatagatgatacaaaaacaccaatcaccttgacctaatt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:TTC28:NM:001145418:12/23	
0	chr16	16841880	16847915	2000498	0	-	AC193110	NA	NA	LINE	L1	L1HS	gaactcaccctttttccgcctttttcttctatctgggccttcagcggattacgccatgcccacccacattgctgagggccatcttctttactcagtctgc<br>tgatgcaaacactaatctcttttggaaatgttttagcagatatactgcaaaacaatgtttgaccagctatctaggcatcccttagcccagttaacaaata<br>aaattaaccatcacaatgacgtatgcacagtgctattcattgcagcattgctaatattgaagcattgctaatataaaagcaaaagaaataaagtaactta<br>aatttacatcaaaatggtctacacttaaataatccctatagcggattttaagttatccgtgcagtggactattatgtagcagtgg<font color="green"><u>AAAAGAATTAAGCTT<br></u></font><font color="red">GAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCAT<br>CTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAG<br>GGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGATGGATGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTT<br>AAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAAC<br>TGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACC<br>ACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGGCAGCAGTAACCTCTGCAGACTTAAGTGTCC<br>CTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGAC<br>CCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACATGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGT<br>TAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGG<br>GAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATG<br>GAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACT<br>TTGAAAAAAATCTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGA<br>AGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGA<br>GAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGG<br>AGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCGACATTCAGATTCAGGAAATACAGAG<br>AACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGA<br>GAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCTATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCA<br>ACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAGAAAATACTTTACAGACAAGCAAAT<br>GCTGAGAGATTTTGTCACCACCAGGCCTACCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCAT<br>GCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAA<br>CAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCA<br>GGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCA<br>ATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGC<br>TAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAAT<br>AATGGGAGACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCA<br>GACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTG<br>GAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCT<br>CACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAA<br>ACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGC<br>AGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAA<br>AATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGA<br>CCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAA<br>CTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAA<br>CCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGA<br>TTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCAT<br>TTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAAT<br>CCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAAT<br>ATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTC<br>AACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCAT<br>ACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTG<br>GCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAG<br>AAAACCCCATCACCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTT<br>ATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGG<br>GATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAA<br>GAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAA<br>AACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTC<br>AAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGC<br>CACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGC<br>CATATGTAGAAAGCTGAAACTGGATCTCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAA<br>ACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTG<br>ACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAAATTTTCGCAAC<br>CTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGAC<br>ATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCA<br>CTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACA<br>CTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCA<br>TTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGA<br>ACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATATTATGCAGCCATAAAAAATGATGAGTTCATATC<br>CTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAAT<br>TGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACC<br>TAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAG<br>AGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAATTAAGCTT</u></font>aattataggtactgagatggaagcttttcagcatgtattatagtggta<br>ggggaaaaaaggaaattacaaaagaaaatgtatactaccacttatgtaaaaatgcatgtacatatttaagtaaatgcagagtaaaaggtatggttaccag<br>aagtgccacagtatttcttgaaggcaagctattcaatgaatatgattcatatcaatgaatatgattcatgtcaatgaatatgattattacatgggtgctc<br>cctctgggtattgatgttagaaaatcgcccttggcaaatattcctataatcacagacaatttaggacctggtagaggttttggaaaatatcaagtccaac<br>cccttactctacagatgagtaaactgaggcccaggtt	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr12	28117695	28117696	2000499	0	-	AC205793;AC210893	NA;NA	NA;NA	LINE	L1	L1HS	actgcctctgtaaattattaagtttactgagcctctgtacacaaagtagtgtaaaggtttgttttattatgatcactgttatttagtattctattgtctc<br>aagaaaagtctgatccatagaatgccatccagaggagggtcaaagcataaagaaatatctacttactaaattgagattaaaaataaagataattatccta<br>ataatttaattttaaaattgtttttaaaaatagacatattaaaatgtatgtctttatcatgtacaatatgatgcctgaagtataaaatattgtggaatgg<br>ttcaatcgagctaactaacaaatgtgttagcacacctagtttttttgtggtgagaacacttaaaagtcattctcagaattttttt<font color="green"><u>AAGAATACAGTACAT<br></u></font><font color="red">GTAGGGAGGAGGAGCCAAGATGGCTGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTG<br>AGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGGGTGCGCGCACAGTGCGCGAGCCAAAGCAGGGCGAGGCATTGCCTCA<br>CCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCATCCGAATATTGCGC<br>TTTTCAGACCGGCTTAAGAAACGGCACACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCACTGATTGCTAGCACAGC<br>AGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAAC<br>TGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGACACAGACAAACAAAAAGACAGCAGTAACCTCTG<br>CAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAATGGGCAGACTGCCTCCTCAAGTGGG<br>TCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGC<br>TGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAATAGTAGATA<br>AAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCATCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAAC<br>AGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGC<br>AAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGG<br>CTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCAATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCG<br>AGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTA<br>CCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGA<br>TTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAAT<br>GTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTGCCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAG<br>TGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACT<br>TTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCA<br>GCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAATAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGA<br>TCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCAT<br>CAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGACTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAA<br>AAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCA<br>ATACAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAG<br>ACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTC<br>AGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACTTATTCCAAA<br>ATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAAC<br>TCAGGATTAAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAAT<br>AAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACTCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAAT<br>GCCCACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAA<br>GGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGAT<br>CAACAAAATTGATGGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACTGAT<br>CCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACA<br>CTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAG<br>TCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTCCTGAAACTATTCCAATCAATAGAAAAAGAGGGA<br>ATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGA<br>ACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGAT<br>GCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAA<br>GCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAAC<br>CCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTACTATTCAACAT<br>AGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGAC<br>ATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAA<br>AATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGG<br>AATCCAACTTACATGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCA<br>TGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATTGCAACAAAAGCC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAAAAAATTT<br>TCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>AAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACAC<br>TTTTCCACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>TATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGAAACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGAATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGG<br>TGGGAATTGAACAATGAGAACACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG<br>ATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACCTGCACAATGTGCACATGTACCCTAAAACT<br>TAGAGTATAATAAAAAAATAAAAAAAAAAGAAAAGAAAAAAAAAA</font><font color="green"><u>AAGAATACAGTACAT</u></font>taactacagtcatcctgctatacaatagatcactggaact<br>tactcctgctatctaactgtaaatatgtattctttgaccaacatctccccaacccccaattacttcagcctctggaaaccaccattctattctctattct<br>gtgaggtcagcttttttagattacacatgagtgagatcttgcggtatttgtctttctgtacctagcttatttcacttaacacaatgtcctccagactcat<br>ccatgtcattgcaaatggcagaattttccccttttttggctaaacagtattatattatgtatatacgccacattttttaaatccatttatctgctggtgg<br>acacttgagttgcttccatatcttggctattgtgaatagtgcggc	OTHER;OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr4	88487285	88493322	2000500	0	-	AC213228	NA	NA	LINE	L1	L1HS	ggaagggcctaaagattggtcctgacatatgaacctctttgaggctaagctggtactaaagtagaccccaaagatgaagttggttttaatatagaaactt<br>attacttctaattagaagagagaacatgttcctcgttaaatacctgtttacatttcagacaccaaataaaatgtcattttcttaaacctcacaacaatac<br>ttttggggagatgttattagtccctcttcagtagatgagagagatctgaggtttagagaaattaaattacaagttatataccctttggcccagtaatccc<br>cctttatgaatctacctgagggagataattatccaaaagtgaaaatatgtgtgcccgaggatgcttattgctgatttgctgtt<font color="green"><u>AAAAATCCAGAATACTA<br></u></font><font color="red">GAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGGAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAATTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACACTGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGG<br>AAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAA<br>AAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACT<br>TCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAAT<br>GCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTA<br>GCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAA<br>AAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAAT<br>TGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCA<br>ACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGG<br>ACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAAC<br>CACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTA<br>CACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCC<br>CATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTG<br>GAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCATATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATA<br>TCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGA<br>ATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGTGGGGAGGGATAGCATTGGGAGATATA<br>CCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTT<br>AGAGTATAATAAAAAAAAAAAAAAAAAAAAGAAAAAAAA</font><font color="green"><u>AAAAATCCAGAATACTA</u></font>aaaacaaccctaaaatcatcactaggagatgctattgctcccaa<br>taatcaatacaatttactgtttactataaaggtataatacagcataatctgggtttattggaattaaatgtaaatcaggtgttccaattatttttttaag<br>ctcagttatttttgttaaacttgaatttcaacaaatagtttttaaaattttttaaaaatatacatatatatattttttcttttagagacaaggtcttgct<br>ttgttccccaggctgatcttgcctcagtgtcccaagtagctgggctataggcgtgagctgccacacccagcttagcacacttttaatctttgccagtatg<br>ataggaaaaaaacagtacttccatgttatattaatatga	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:HSD17B11:NM:016245:5/7	
0	chr12	63975521	63975522	2000501	0	-	AC216902	NA	NA	LINE	L1	L1HS	caataaccttgtgactgatataatttatcacctgaatttgtagtaaattccttttttcctaggttcttattcttatagaatgctagcaacattttatatt<br>ccataattaaaatattatttgcttttaggttattctatataggaattttacagcctcccaattatgcttctttgtaatcctcctattaattaaatgttgt<br>tttgcaagggagagttaacatgttatataatagtctttaatttcctcagataacagaagggctcaggaaataaacagccatacatctttccctaccaaaa<br>aaaaaagggagacatcaactcaaaaatgtactttagccaaatgatgtatgaatcaaatatccttaaggatagttaaattaacatt<font color="green"><u>AAAAGTTGTGGTGGT<br></u></font><font color="red">GAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATC<br>TCTCTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGG<br>GGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTA<br>AGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACT<br>GCAAGGCGGCAACGAGGTTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCA<br>CAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCC<br>TGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGTCCCTGACTCCT<br>GACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTC<br>TGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGAT<br>GGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGG<br>ATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAA<br>ACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACG<br>TGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTT<br>AGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATG<br>TGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACA<br>GAGAACGCCACAAAGATACTCCGCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCC<br>AGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATAT<br>TCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCA<br>AATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAAT<br>CATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACA<br>TAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTAT<br>TCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTT<br>GCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGG<br>AGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATT<br>AATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAA<br>GCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAACTGACCACATAG<br>TTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAA<br>TCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTT<br>GAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAA<br>AGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAAC<br>TAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGAT<br>AGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATAC<br>AAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACT<br>AAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGAT<br>GGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACT<br>CATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAA<br>AATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTC<br>AATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAA<br>TTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGAGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATAT<br>CATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTT<br>CTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTATATC<br>TAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATT<br>CTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACA<br>AGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAG<br>GAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGA<br>AAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGAC<br>TTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAA<br>TGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCT<br>AGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATA<br>AAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAA<br>TTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGC<br>AACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAG<br>GACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAA<br>CCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTT<br>ACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATC<br>CCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTT<br>GGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCAT<br>ATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGG<br>AATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATAT<br>ATCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACT<br>TAGAGTATAATAAAAAAAAAATAAATAAATAAAAAAATAAAAAAAAAAAA</font><font color="green"><u>AAAAGTTGTGGTGGT</u></font>agtcactgaatgcagtaaatgtatgatttaatgaa<br>aaagataaaaataatccttaaaagggagaacgtataatacaaaatcatatagaatgtcaactattcgacaatagtcatgtggatctacaggacccactct<br>agctaacaaaggcaaggcagagaaaaagacaagaatcctaagtttctcctgtagaaaagagtcaaatgctactgcattttttactttttcaatttaatac<br>ttaggtaaggctcaatgatgtttttagatactttttcaaggtcatagaacctaaaataaaccctatgaaagaaaaaagtgaataaaacatggaaggtcag<br>gcacagtggctcacgcctgtaatctcagcactttggcagttgcggcagga	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:MSRB3:NM:001031679:1/7	
0	chr6	109089303	109089304	2000502	0	-	AC215798	NA	NA	LINE	L1	L1HS	aatacacccagttgacagtgatgacccagattcagtcctatctctgccactgaccaaccatgtgaccctgaacaaatctaatttgtctgcaacaactgca<br>gttccccaccttcattatggctataatcatatccaaaccatctctgtacagggatgatgtaagggtgacacatgatatatttcagaagccagtcatgcta<br>tgaagtcagggtgttcttattgctattataaaacacagagtccatggtggagagagttcatggcctgcagcaggctcattctaatctgtaaaatgcctcc<br>tgcagtaaaagggaggagctgatgaatctgtatgctccacatccggaacagtacctgcaggccagatgagtttttatttgcacgtt<font color="green"><u>AAAGACAAAAGATA<br></u></font><font color="red">GATAGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCG<br>GGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAA<br>GCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGA<br>CCGGCTTAAGAAACGGCGCACCATGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAG<br>ATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGA<br>GCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTA<br>AGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGAGGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGAC<br>TCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCC<br>TGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAA<br>AGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAG<br>CTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTT<br>GAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAAC<br>TACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCAAGAAGGGAA<br>GTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGT<br>GATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAA<br>TACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGC<br>AGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACA<br>AGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCA<br>AAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGG<br>GGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACA<br>CATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCA<br>CCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACATCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAAT<br>TGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAA<br>GACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCACTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>CAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTG<br>GTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTT<br>TATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGAC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACAC<br>TTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>CATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGG<br>TGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG<br>ATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAA<br>AACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAGTATCTCATAAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AGACAAAAGATA</u></font>ctgcctgatgctactgtccatatattaaatatggacaatcctaaaagttatatatacatatatatatatttgtttaaattggcaatca<br>cgaactgtattcatgtagaagatacaaacacatgcttctaccagaatgttccccccgccgcccgagacagagtcccactctgtcacccaggctggagtgc<br>aatggcttgatctcggctcactgcaacctccgcctccagggttcaagtgattctcccacctcagcctcccgagtagctggggttacaggtgcgtgccacc<br>acacctggctaatttttgtattttcgtattttcttttttttatttgagatagagtctcgctctgttgcccaggttggagtgcagtggcgtgatctcgg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:FOXO3:NM:001455:1/3	
0	chr4	112848423	112848424	2000503	0	+	AC226005	NA	NA	LINE	L1	L1HS	acaccaccatcaaactaaaaatcatatacactgcttaaatacttataaactagaaaatatatcataggaaaaatgtgaccactaaattgtttgttgaata<br>acatgcctataaaaagaaaataatttagatttaagctgatagttacatagagtaaaagaaatatttggatgtcctttgagattattcatttcaacaaagt<br>ctgtcatgcccaataagtaccaaatgacagtgtgggaacatgtgaaactgaaactggactgttaaagaaatcttagcagaaatatggaaaatcagaatat<br>gaaatgtacaaaccccagctaagtcatagactatcattttcattatctgtcacctgacagcagattatctactcctaaactgtgtt<font color="green"><u>TAAAGTATCTCATA<br></u></font><font color="red">AGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGT<br>TCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCG<br>CAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCG<br>GCTTAAGAAACGGCGCACCATGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATC<br>AAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCC<br>CACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGT<br>GTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGAGGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCC<br>TGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGT<br>CTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGA<br>TGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTG<br>GATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAA<br>AACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTAC<br>GTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTT<br>TAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGAT<br>GTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATAC<br>AGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGC<br>CAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATA<br>TTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGC<br>AAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAA<br>TCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACAC<br>ATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTA<br>TTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGT<br>TGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAG<br>GAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACAT<br>TAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCA<br>AGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATA<br>GTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGA<br>ATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTT<br>TGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGA<br>AAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAA<br>CTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGA<br>TAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATA<br>CAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGAC<br>TAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGA<br>TGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAAC<br>TCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAA<br>AAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTT<br>CAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAA<br>ATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATA<br>TCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGT<br>TCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTTTAT<br>CTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCAT<br>TCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTAC<br>AAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTA<br>GGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGG<br>AAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGA<br>CTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATA<br>ATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGC<br>TAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCAT<br>AAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAA<br>ATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTG<br>CAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAA<br>GGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAA<br>ACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTT<br>TACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCAT<br>CCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACT<br>TGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCA<br>TATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGG<br>GAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATA<br>TACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAAC<br>TTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TAAAGTATCTCATA</u></font>aacttaaatgatgttaagggcaaatgtttatattaaagtatc<br>cataaaaagaactaaatttgtaaaaatgagactcaaaataacttacataattttaatacaaatcatttaaaattgaattttgcttagagaagagttttct<br>aaaaaggaataatgaaaaactgtatttatttatgttttttaattattaatttttttttttttgagacagagtccactctgttgcccaggctggagtgcag<br>tggtgcaatctcggttcactgcaacctctgcctgccaggttcaagtgattctcgtacctcagtctcctgagtggcagggactagaggtgcccaccaccac<br>acctggctaattttttgtatttttagtagagacaggctttcacc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr17	18717193	18717194	2000504	0	-	AC216987	NA	NA	LINE	L1	L1HS	agcctctactccaggctgggcgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcacctgaggtcgggagttcaagacca<br>gcctgaccaacatggagaaaccctgtctctactagaaacacaaaattaaccgggcgtggtgacacatgcctataatcccagctgctcaggaggctgaggc<br>agaattgcttgaacctgggaagcagaggttgcggtaagctgaggttgcggtaagccgaggttgcggtaagccgagatcgcgtcattgcactccagcctgg<br>gcaacaagagtgaaattctgtctcaaaaaaaaaaaaaaaaaaaagagcctctactccaatacttggttatttccacccgtt<font color="green"><u>AAGAACACTGAGTGGCTGG<br></u></font><font color="red">GTGGATTGAGCCAAGATGGCCGAATAGGAACAGCTCTGGTCTACAGCTCCCAGCGTGAGCAACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCGGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCTGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATGTAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTTTTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCATTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGTATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACACTGAGTGGCTGG</u></font>acacggtggctcatacctgtaatcccac<br>cactttggtaggccgaggcgggcagattgcctgaggtcaggagttcaagaccagtctggccaacatggtgaaaccccgtctctactaaaaatacaaaaat<br>tagccaggcgtggtggcgccaactgtagtaccagctactcgggaggctgaggcaagagaatcactagaacctgggaggaggtggttacagtgagctgaga<br>ttgcaccactgcactccagcctgggtgaaggagtgggactttgtctcaaaaaaaaaaagaaagaaagaaggaaaaacactgaaagaacatgtaaaagtca<br>gcagttatgtcagaaaacttagttttctaaattctaaattggtaagatatact	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:PRPSAP2:NM:002767:5/12	
0	chr13	39904644	39904645	2000505	0	+	AC217325	NA	NA	LINE	L1	L1HS	acttgaaaagagaaagaatttcacacttgctagcccagcataaccacccacccttgaatgtcagtaaatgaagaagccaaaaatggctctttaacagaca<br>tccccagggagggtaaggttgtgtctgcagccagaaatgttgcttcctttggtctaagtcagtaatattcagatcacagctctccagctgcaagcagatc<br>tgttcagatgcaaactgtggctggtgaagcccccactccctttctcttctgaaatatgtttcacctctttttccagggtaggaccaagtgatgctttcat<br>tcaatggtaattataaatatgactcttggcacatttaactgtaagagtcattgctatgagaccagatttagctactctaatat<font color="green"><u>AAGAATGACTTTCACTC<br></u></font><font color="red">CGTCTCATAGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCATGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGAGGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAGTATCTCATAAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGACTTTCACTC</u></font>tcatcttatccgggcctcttagcaaaccagaacctaagctagttattggaccactggccatg<br>atgggatgagggaatgaaatgtcttactcccttcctatcctgttcataccagcttcctcacagaatgagatttttttaagaagggaataatctcacacga<br>gctactataaaccaggtagctcaggactttctggtcatctgcactgacactgtcccagctgagattcagaatagttaagtaacgtgtcagaggtcactca<br>gcaataaataccaaagccatggctccaacccgattctgttgtgctccaaagtgcatgacctttccaccatgttgtgctgcctgacggttttcttaagatt<br>ctcagggactatggcagttaa	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:LOC646982:NR:024507:6/7	
0	chr14	86022278	86022279	2000506	0	-	AC203587	NA	NA	LINE	L1	L1HS	tttgtaattgaaattttcttttaaatacattgtttaattgtttgctgcttttatattgaagttttaactatagtgcaatgcaaccaactgtgacctgcct<br>tcaggataaagctgaacaaatgagaaattcgttctttccaaattttaacaaccttccaaaggtagcctacttttgttcactcactttttttgtaagtgta<br>tctatgcggaaaaaaaaaaaaatgctcttttagtagtttactccactatgccagtacagaactcttgcaatgatagttttttataattagcaaatagaaa<br>atatttttaaagtatttgggaagaaagaacatttaatttagttatagaaaatgaatttcacaaataatactgttacctattcac<font color="green"><u>ATAAAAACTAAGCACA<br></u></font><font color="red">GACCTTGGAGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCC<br>ATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTG<br>CCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATAT<br>TGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACGATATCCCACATCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGC<br>ACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCT<br>CGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAAC<br>CTCTGCAACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAG<br>TGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGC<br>AGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGCAG<br>ATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGC<br>AACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACAATCAAGTTACTCTGAGCTATGGGAGGACATTCAAACCAAA<br>GGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCA<br>AGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAA<br>GCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGT<br>GTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACATTC<br>AGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAA<br>AATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGA<br>GAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAAGTAAGCTTCATAAGTGAAGGAGAAATAAAAT<br>ACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCTTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTA<br>CCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATAACCAGCTAACATCATAATGACA<br>GGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACC<br>CATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACA<br>AAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGA<br>TCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACT<br>TAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAA<br>CTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAAAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCC<br>AAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAG<br>AACTCAGGATTAAGAAACTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGA<br>AATAAAGATGTTCTTTGAAACCAATGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTA<br>AATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGGGCAAACACATTCAAAAGCTAGCA<br>GAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGG<br>ATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAGAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCG<br>ATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATA<br>CACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAG<br>AGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAAGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGG<br>GAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGAT<br>GAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCAAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGG<br>ATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAA<br>AAGCCTTTGACAACATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAA<br>ACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAAC<br>ATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACG<br>ACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACA<br>AAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTA<br>GGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTC<br>CATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTT<br>CTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGC<br>ATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAG<br>AGCCCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTG<br>CTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTT<br>AAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCATCCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAAATGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAATAAAAAAAAATAAAAAAATAAAAAAA</font><font color="green"><u>ATAAAAACTAAGCACA</u></font>ttttgtcataccttagtgattaagtaaaag<br>acatataaaataagtatacaaattagttggaagattctacttctgcctaggatgtatatgcttgaaaggccactgtttcccccttaacagcaaggaaaga<br>ccagataatataacatttcttaattgtgtcaaagagatgagctaatggagctattgcttatcctgaaatgtaaagcaaggtaggtgtctccaaggagagc<br>aaggccagaagttctgactcactgtggcagagcacagaaagaggaccccctgtacgatctggaaaaagaatttagatgagataggtaattgttgctaatg<br>tccaagggtgggctatcatgaaagtatagaactgcctacctaaaagccactcat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	79782897	79782898	2000507	0	+	AC209201	NA	NA	LINE	L1	L1HS	atgatggtgcatacctgtaatcccagctacttatgaggctaaggcacgagcatttcttgaatccgggagatgggggttacagtgagccaagattatacca<br>ttgtactccagcctgggagagcgagactctgtctcaaaaaaaaaaaaaaaaaaaaaaaaagactgatgtggaaagagtattgcaagagaggtaacaagaa<br>caggcccctgatacccaaaataagcatggcatgaatggggtactcaaagtctttcattctgtggaatcggagatgatgactgagtgagtcgggggttgca<br>gtgcaaactgtgatctgtggcccaagtcctgactgctgtctgcttttgtatggcctgcctttttacatttttacatgattttttaaaaat<font color="green"><u>AAGAAATTGA<br></u></font><font color="red">AGGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGG<br>GTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGC<br>TGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATA<br>AAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAAC<br>AGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGC<br>AAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGG<br>CTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCG<br>AGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTA<br>CCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGA<br>TTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAAT<br>GTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAG<br>TGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAA<br>GCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAA<br>AATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCAC<br>ACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTG<br>TATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGG<br>GTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAG<br>AGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACAC<br>ATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCAC<br>CAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACA<br>TAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAA<br>GAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTC<br>TTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAAGGCCTACAAGA<br>GAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAAT<br>AACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATT<br>GATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAA<br>TACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAG<br>ACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCA<br>GATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTA<br>ACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGC<br>AAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGG<br>TTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACA<br>AAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAA<br>TATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAA<br>GTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTAT<br>ATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGC<br>ATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTT<br>ACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGG<br>TAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATT<br>GGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCT<br>GACTTCAAACTATACTACAAGGCTACAGTAAGCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAAGAGAACAGAGCCCTCAGAAA<br>TAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTG<br>GCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACC<br>ATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACA<br>AAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTT<br>CGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCG<br>AAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCA<br>AAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACT<br>TTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCC<br>ATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGA<br>CTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTT<br>CATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTGATAGGT<br>GGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGA<br>TATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAA<br>ACTTAGAGTATAATAAAAAAAAAAAAAAAGAA</font><font color="green"><u>AAGAAATTGA</u></font>actgtataccatgatgtgtgaaaaatatgagattcaaatttcagtgttcataaagttt<br>tattagaacatagccatacccactttattttcatgttgtatatggctactctcatgctacaatagcagagctaagtagttgcaacagagaccatagggtc<br>tacaaaacctgaaagatttgctgtctggccttttacagaaaaaaaagtgtgctgactcctgctgtagaggatgagaggttgctatagagttagatcatga<br>aggaccctatagttcacattgagagatttttattttgattctgaaaggcaatggggagtaactaaagggttttaagtgccttcatatttcttaggttggc<br>tgttagttaatttgcctcctttcatattttct	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:CTNNA2:NM:004389:2/18	
0	chr3	153170793	153170794	2000508	0	-	AC216905	NA	NA	LINE	L1	L1HS	gtcttctgagttccctgactcttctttgatctgaggtagttttcctgatgtgctattaataaggaagaaggtgagaagaagagtggtgaagataagaaaa<br>tatcaaacaactattttagaacaagtctgagtcccttctttaaatttgttgtgttgtagtttttaaatgcagtctatgaagtcagtcattaaattaaatg<br>tgatcaaatatgaatcttttataacaattttattatccccttagattttatatttattgtttttgctgttgtttgtttaggcagttatcaagaatttaag<br>aaaagaattttatcttttaaaagtgaaattataatttttcacaatgttagtatatgagcagaaaagaacatgtgcaacactatat<font color="green"><u>TAAAAAAGAAGAGTA<br></u></font><font color="red">GGAGAGGAGGAGCCAAGATGGCTGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGGGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATTGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGACACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAATGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCAAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACTGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAGCTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAATCTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGCTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTGGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGAAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATAC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACTTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAATGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCC<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATGGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACTGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTCCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACGCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACATGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAGACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGGTGGGA<br>AAACTGGCTAGCCCTATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATTGCAACAA<br>AAGCCAAAATCGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAAAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCTATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAACCATAAAAAATGA<br>TGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGAACACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAATTAAAAAAAAAAAAAAAAAATAAAAAAT</font><font color="green"><u>TAAAAAAGAAGAGTA</u></font>tgaattagaaaaatattcctaatttgcagaggta<br>aatcttttactctttctagtcccaaagtccaaattcttcctctaaatctttgtttacgccggggactttgcctaacataatctctgttttttaatttaaa<br>aaatgagaattcttgtactatacaatcctaatatttctttttagtgttaatattttatttttaatatcatttaagttgttatagaatctgactatgaagt<br>cagaggattaaataccatgaggtcatagagaaacaatgagttacatggtgcaaataccaaaaccacaaaggagctgatacattaatttttttcatatttt<br>ggctagaattataatttaaagagagatccaaattacattaatttatttaaa	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr1	65796777	65802855	2000509	0	-	AC225824	NA	NA	LINE	L1	L1HS	aattaaaagtctggtggcttaatatacccacatgaagtccgacttcagagacaagatttcctatgagttctactcaagttggagtatcacaaatatgatt<br>atttgtactactatgtcataaatccaaatagtagtataattttaatatatgtggcttggactttggatgaaaacctacctgaattaggcatcaggagtgt<br>tgggtgccaggctaagctcttccggtaatcagctgtgggacttgggttttcaacactctagacctcaggttcctcatctacaaatcagactgttagatgg<br>tctctacaacccctttcagagctgcctattattctgagagatgtaatttaaaatggaaaccacactttaccacaaagaatagtgt<font color="green"><u>AAAACATTAAGAAAC<br></u></font><font color="red">GGATTCACGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCATGAGCAACGCAGAAGACGGGTGATTTCTGCATTTCCATCT<br>GAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGGGTGCACGCACCGTGTGCGAGCCGAAGCAGGGCGAGGCATTGCCTC<br>ACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATACTGCG<br>CTTTTCTGACTGACTTAAAAAACGGCGCACCACGAGATTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAG<br>CAGTCTGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCACCATTGCCCAGGCTTGATCAGGTAAACAAAGCAGCGGGAAGCTCCAAC<br>TGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTG<br>CAGACTTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGCTCTCCCAGCACGCAGCTGGAGATCTGAGAACCGGCAGACTGCCTCCTCAAGTGGG<br>TTCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGAGCACCCTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCT<br>GAGGGTCCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCCACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAA<br>AACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGTCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACG<br>GAACAAAGCTGGATGGAGAATGACTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCA<br>AAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGC<br>TCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCGATGGAAGATGAAATGAATGAAATGAAGCGA<br>GAAGGGAAGTTTAGAGAAAAACGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTAC<br>CTGAAAGTGATGGGGAGAATGGAACCAAGTTGGAAAAAACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGAT<br>TCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATG<br>TTAAAGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCATCAGAAACCCTACAAGCCAGAAGAGAGT<br>GGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAGGTGAAGGAGAAATAAAATCCTT<br>TACAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAG<br>CCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGAT<br>CAAATGCACACATAACAATATTAACTTTAAATGTAAATGGACTAAATGCTCCAATGAAAAGACACAGACTGGCAAATTGGATAAAGAGTCAAGACCCATC<br>AGTGTGCTGTATTCAGGAAACCCATCTCATGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAA<br>AAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAA<br>TTCAACAAGAAGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGA<br>CTCCCACGCATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGATAGAAAGTCAACAAGGATACCCAGGAATTGAACTCA<br>GCTCTGCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCAACCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAA<br>TTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACT<br>CAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATA<br>AAGATGTTCTTTGAAACCAACGAGAACAAAGACACAACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATG<br>CCCACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAG<br>GCAAGAAATATGTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATC<br>AACAAAATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATC<br>CCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTCAACACATACAC<br>TCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAGTAACAGGAGCTGAAATTGTGGCAATAATCGATAGTTTACCAACCAAAAAGAGT<br>CCAGGACCAGATGGATTCACAGCTGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAA<br>TCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCTGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAA<br>CATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGTGATG<br>CAAGGCTGGTTCAATATACACAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAG<br>CCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAAGAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACC<br>CACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATA<br>GTGTTGGAAGTTCTGGCCAGGGCAATTAGGCAAGAGAAGGAAATAAAGGGTATCCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACA<br>TGATTCTATATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAA<br>ATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGA<br>ATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTCCAT<br>GCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTCATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTT<br>CACAGAATTGGAAAAAACTACTTTCAAGTTCATATGGAACCAAAAAAGAGCCCGCATCACCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATT<br>ACACTACCTGACTTCAAACTGTACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGC<br>CCTCAGAAATAATGCCGCATACCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTG<br>GGAAAACTGGCTAGCCATATGTAGGAAGCTGAAACTGGATCCCTTCCTTACACCTTACACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGA<br>CCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATGACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAA<br>CAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGA<br>GAAAATTTTCACAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCCAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAA<br>AAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAA<br>TGCAAATCAAAACCATAATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAAT<br>AGGAACACTTTTACACTGTTGGTGGGACTCTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTT<br>GACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAA<br>TAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAA<br>TGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCA<br>CTCATAGGTGGGAACTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTTGTGGGGTGGGGGGAGGGGGGAGGGATAGC<br>ATTGGGAGATATACCTAATGCTAGATGACAAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATG<br>TACCCTAAAACTTAAAGTATAAAAAAAAAAAAAAACAAAAAAAAAACAAAAAAAAAAACTTCTGATTCAAAAAAAAAAAA</font><font color="green"><u>AAAACATTAAGAAAC</u></font>atgtc<br>tcatgactcatatctgagaattggcaccatatgataagtgagaattggcaccacatgataagtaaatggaaaaaagtgtttgtttattttacaacttact<br>atcaggaagaaaataaatgagtataaacagtgggtagtccagtaaatttgtttttcacactacaagtttgtcatcagaatttttgttctttatacactga<br>tatcacaatggttctttaggatttctagaaatcagtacactgtttggaaccctcatgatttaattatattaaatgagtacaaattcctccctgcttttta<br>tgctacctgttcttgatataagatgttctcataaaataaactcaagggcaagttttatagtcaagatgtgtcacagatac	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:LEPR:NM:002303:2/20	
0	chr2	172888243	172894350	2000510	0	+	AC217416	NA	NA	LINE	L1	L1HS	aatttctttgtgtaggatctgtgttaaggtctttgcatgtttagtagaattctatttccaactgcaaaagtctttttagcagaatctttttttttttttg<br>agacggagtcttgctctgttgcccaggctggagtgcagtggcgcgatcttggctcactgcaatctccgcctcccaggttcacaccattctcctgcctcag<br>cctcctaagtagctgggactacaggcgcccgccaccaagcctggctaatttttttgtatttttagtagagatggggtttcaccatgttaaccaggatggt<br>ctccatctcctgaccttgtgatctgcccacctcggcctcccaaagtgctgggattacaggcttgagccaccgcacccggcagc<font color="green"><u>AGAATCTTTTCTTTGTC<br></u></font><font color="red">CGCGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGACTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGTCAGTGTGTGCACGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCGCACCTGGCTCAGAGGGTCCTACGCCCACGGAGTCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACACCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCACCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACAAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTCGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGTTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAACGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATGCTCCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCAACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAAGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAGAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTAAGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATACTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCAGTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGCAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTCA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATTAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAAGGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAATTAAAAAAAAAAAATAATAAAAATAAAAATAAAAAAAAAATAAATAAAAAAAAAATAAAAAAAAATAAAA<br>GAAAAAAAA</font><font color="green"><u>AGAATCTTTTCTTTGTC</u></font>ttccttttatttaaaaaaaatcaaaatgaagccttttcagtgcaaaattttcagaaaaatagctctcttttcca<br>ttgcaacattgtgctgagaacatgcgtgtcttgattctgcctctacttttcaacgcatggcagctaccttagttcaggttcttatcgtctctttcattat<br>tgtaattacatggctacttttcttacctccattctcattccctttcctatccatcagccacactattgttaaattgaactttgaaagtacaggtctaaga<br>aagttgacgacacacagccaatgatgtgtagaagcaagcaatctcatagatgttgcgggaatgaattagcgcagcctcttcgaaaggcaatgtagtaatg<br>tctatcaaa	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr4	147361088	147361089	2000511	0	-	AC216136	NA	NA	LINE	L1	L1HS	atgttacattcatgtggaagtggagaccacctgtcttcggggaagttaggcctctccttttccccaggggatgaactgtgattagactaaaaccagtgtt<br>ggtgattctgttccccttcaccagatagaattctggccaatgaggccagatctgctgagagaacagctaatgtctaaggatcaatcttttcacgtaaggc<br>ctttatttcagctgtcatcccagtatgaggcctaaaaccatggcactcatcctgaaactgtgcgatgtcaaaggaatgaaatcccaactcgctgatgatg<br>gcggagcaggaaaatcgaaaaatcttaggatctagatgatgtcattgaatggcttcacccaaagcagaaactgtgcctccacactt<font color="green"><u>AAGAGAGAAAATTA<br></u></font><font color="red">GAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGG<br>GTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAG<br>CGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGAC<br>CGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGA<br>TCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAG<br>CCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAA<br>GTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACT<br>CCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCT<br>GTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAA<br>GATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGC<br>TGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTG<br>AAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACT<br>ACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAG<br>TTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTG<br>ATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAAT<br>ACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAAGAAAAAATGTTAAGGGCA<br>GCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAA<br>TATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAA<br>GCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAA<br>AATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCAC<br>ACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTG<br>TATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGG<br>GTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAG<br>AGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACAC<br>ATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCAC<br>CAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACA<br>TAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAA<br>GAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTC<br>TTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCACTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGA<br>GAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAAT<br>AACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATT<br>GATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAA<br>TACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAG<br>ACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCA<br>GATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTA<br>ACTCATTTTATGAGGCCAGCATCATACTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGC<br>AAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGG<br>TTCAATACACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACA<br>AAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGGTATCTATGACAAACCCACAGCCAA<br>TATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAA<br>GTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTT<br>ATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGC<br>ATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTT<br>ACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGG<br>TAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATT<br>GGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCT<br>GACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAA<br>TAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTG<br>GCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACC<br>ATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACA<br>AAATTGACAAATGGGATCTAATTCAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTT<br>TGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCG<br>AAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCA<br>AAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACT<br>TTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCC<br>ATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGA<br>CTTGGAACCAACCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTT<br>CATATCCTTTGTAGCGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGT<br>GGTAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGA<br>TATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAA<br>ACTTAGAGTATAATAAAAAAAAAAAAAAAAAGAATTGTAAAAAAAAAAAATTATAAATAAAACAAAGAAGAATATGAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAGAGAAAATTA</u></font>agtgtctttattcattaagtttctgttaatcagtttttctgatacttggaactaaaacaatcttgatgcatacagtg<br>agcaaagacatatgaataaagatatccatcaaaaccatttatgaaaaaaatttaaaaagtaaatacccataaataagaaactggttaaatcaatcatgcg<br>acctctagacaatggactgtcatgaaatcattaaaaacaagctctgtggctgggcacggtggctcacgcctgtaatcccagcactttgggaggctgaggc<br>gggtggatcacgaggttagaagattgagaccaccctggctaacacggtgaaaccccatctgtactaaaaatacaaaacaaaaaaattagccaggtgtggt<br>ggtgggtgc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr18	15085263	15085264	2000512	0	-	AC208588;AC226067	NA;NA	NA;NA	LINE	L1	L1HS	atgtttaagtaatgtaaatagccatcttagtaaaatacttacataatatgtttttgattttcttaataatagacttgtgcagaaaaactttttataattt<br>ataagaatactaaattaactattgaaaacatttgtatgtctttttttatctcctatatttttccaggcaatattagcagaatactatccacaaagttttc<br>taagccatatcaaacatatcaatgtttgtgaaatcaaagcacaaaaatgaaaatttctgatatttaatatataaagtgtatctatacaatttataatttg<br>ataaattttacatgcttattctttctctgaatgtattacataattacatgagatatattaactcatatgctataatacttcattt<font color="green"><u>AAGAATAGTGTCCTC<br></u></font><font color="red">ATAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACAGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGTGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAAAAACGGCGCACCAGGAGACTATATCCCACACCTTGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCTGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGAGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCATGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAATTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAATGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGATAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGTGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGAGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCAACACCAGGCCTGCCCTAAAATAGCTCCTGAAGGAAGCGCTAAAGATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATAACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGAAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAAATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATGGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGACGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTTATCGCTGGGATGCAAGG<br>CTGGTTCAATATACACAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAGGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACGTAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTTTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCCAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACTTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAACGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACATTAGACCTAA<br>AACCATTAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TATTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTGACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACAAGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCAGGGGAGGGGGGAGGGATAGCTGTGG<br>GAGATATACCTAATGATAGATGACACGTTGGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAAAGTATAATAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAGTGTCCTC</u></font>ttcaaaatcgatttgggaatacttacagcttgatttggctcaactgaataa<br>atgaaaatcttagaagtttcattgttgctagatccaatgagaaaaactatccagtatggtacctttgcctgctattattcttctctatttatctttatta<br>gtattctagagttattaagaatagattataattgaaatatgagaagtcctgggaaaacttcatgggcagccacctaaccactttttttatattctaccgg<br>aactggctttaaggaagaacaatcagagtacatactttaattacaagcagaagaacagagtaactttaactttatgatattcaattttttttaattctaa<br>tctttatgtgaccctgcaaatttgaattcaggct	OTHER;OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr7	66228622	66228623	2000513	0	-	AC216283	NA	NA	LINE	L1	L1HS	aagagttctagaagataacacaggaaagtctagatgaccgtggatttggtaatagctttttagatagcaaaccaaaggcatgacccatgagagaaaaaat<br>tggtaagtattaaacatttttgctctgcagaagacactgccaagagatgaaaagacaagctacagactgggagaacacatttgcaaaagacatatctgat<br>aaaggactccaaaatatacaaagaactcttaaatctcaacaataagaaaatgaacaacccaattaaaaatgggccaaagaccatagcagacatctcatca<br>aagatatatgaatggcaaataagcatatgaaaaaatgttccacatcacctgtcatcaggggaatgcaaaataaagtaacagtgac<font color="green"><u>AGAACTCTCATCCAT<br></u></font><font color="red">AGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCACGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACCCCCACGGAGTCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAGGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTAAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCTAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATTATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCACATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTGTCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAACATCAACAAAA<br>TTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGACGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGC<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATTAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAATAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATTAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAACTCTCATCCAT</u></font>tactcatgggaatacaaaatggtacagccactttggaagacagtttggca<br>gtttcttaaaaaactaaacaatactcttatgaaactacccagcaactacactccttggtatttactccaaggagttgaaaatttatatgcaaacacaaac<br>ttgcacacagatgtttatagcagctgggttcaaaattgccaaaacttggaagaaaccaagatgcccttcagtgggtgagtaaactgtggtacatccagac<br>aacggaatattgtttagctctaaaaagagatgaactatccatgtgaaaacacatgaaaggaaccttaaatgcatattgctaagtgaaagaagcaaatgtg<br>aaaaggctacatacagtatgattccaactatatga	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:TYW1:NM:018264:13/16	
0	chr7	42496401	42496402	2000514	0	-	AC216175	NA	NA	LINE	L1	L1HS	tcttaccaagagcattatcctataataaatacagaattaaattgtttaaaaactcaaggtaagcaattctcccatttgcagctatttattaggtatattt<br>aagggatgaataaattcattttcaccacaagtattttgaaaaccaatctacttatttgtgtgaattcagtgattccctatgaactttcagaatatatata<br>tctcaagatcagctacttatctgtgaagggtgacatattgaccgaagagctcattatttttaagctctataaatatatctcacctgcctatttactcaga<br>ctaaaccatgcatttcttaagaatattgtgtgggtctggtaatagcttgtccaatgaatgcgcaaaagttattacaagcaagttcaat<font color="green"><u>AAGATCAAAGTA<br></u></font><font color="red">GGAGGGAGCCAAGATGGCCGAATAGGAAGAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGACTTCTGCATTTCCATCTGAGGTAC<br>CAGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCAAGTGGGTCCCTGACC<br>CCTGACCCCCGAGCAGCCTAAGTGGGAGGCACCCCCCAGCAGGGACACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCT<br>GTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAA<br>GATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGC<br>TGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTG<br>AAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACT<br>ACGTGAAGAATGCAGAAGCCTCAGGAGCCGTTGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAG<br>TTTAAAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTG<br>ATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAA<br>TACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGC<br>AGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACA<br>AGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTACAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCA<br>AAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCACATGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGG<br>GGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAGGACCTAACTGTCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACA<br>CATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCA<br>CCAAGCAGACCTAATAGACATCTACAGAGCTCTCCACCCCAAATCAACAGAACATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATATCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAATTGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACAACCTAACATCACAATTAAAAGAACTAGAAAAGTAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAAT<br>TGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCCAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAA<br>GACTAAACCAGGAAGAAGTCGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAACCAATAGTTTACCAACCAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCTGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>CAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTG<br>GTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTT<br>TATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACACCAACAACAGATAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTAACAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGACAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGAC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACAC<br>TTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGCGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>CATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACATCGCATATTCTCACTCATAGG<br>TGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG<br>ATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAA<br>AACTTAGAGTATAATAAAAAAAAAAATAATAAAAAATAAAATTAAATAAAATTAAATTAAATTAAATTAAATTAAAATAAAAAATAAAATAAAAAATAAA<br>ATAAAATAAAATAAAATAAAATAAAATAAAAAA</font><font color="green"><u>AAGATCAAAGTA</u></font>aacagttatagggctaagcatgacaacaggtgcagctgaaagcacatgactgaaa<br>ggaaaatggtaatgaggggtggagttaggtgcctccaccctgtggatcagacacatgtctatcacacaggcacccagaggagtttggcaggaagatattc<br>agggcttggggatatgccgtttgctgtctctaagggatgagtcgatacagatctcaggggcgatttgctagctcttcccttgcacatttccagggcacaa<br>taattggcccaatggcttctagaaaaaccccctgagaaaagttacaattggcaaagggttttagactaatggaaacctggatggatttttcttgtatgtt<br>accttatattttatattatagaaaaaaactaag	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr18	49679742	49679743	2000515	0	-	AC203624	NA	NA	LINE	L1	L1HS	ccctcctccaacatgtggggattattacaattcgagatgagatttgggtggggacacagagccaaaccatatcaatgggtgattgtgcaaaggtaggaaa<br>aattcaaaatatgagaaagcaaaaatagataaaaatgtaattgtaccatatatatttcttctcctgatatctaagcctggaaataggtcaggttattgaa<br>gtggtcatctagcagttaagtctaaggatcttttttctgcagtgttaacctgatcttgatccttcagctctgtgtggcacaatgaccaagttcttggctg<br>ctatgccccaacccttttctagatttcttctaaatttcaaaatttttttattctcctgaaaaccaactctttctctgccatt<font color="green"><u>AAAAATATATTTCTTTTG<br></u></font><font color="red">GGGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGATGGGTGATTTCTGCATTTCCATCTGAG<br>GTACTGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGGGTGCGCGCACCGGGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACC<br>TGGGAAGTGCAAGGGGTCAGGGAGTTACCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTT<br>TTCAGACCGGCTTAAAAAACGGCGCAGCACGAGACTATATCCCACACCTGGCTTGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAG<br>TCTGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTG<br>GGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCA<br>GACTTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTC<br>CCTGACCCCTGACCCCAGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGA<br>GGGTCCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCCACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAA<br>CCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGA<br>ACAAAGCTGGATGGAGAATGACTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAA<br>GAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTC<br>GAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGA<br>AGGGAAGGTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTATGTCTGATTGGTGTACCT<br>GAAAGTGATGGGGAGAATGGAACCAAGTTGGAAAACACTCTACAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTC<br>AGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTT<br>AAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGG<br>GGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTA<br>CAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCC<br>GCTGCAAAATCATGCCAAAATGTAAAGACCATGGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATAACCAGCTAACATCATAATGACAGGATCA<br>AATTCACACATAACAATATTAACTTTAAATGTAAATGGATTAAATGCTCCAATTAAAAGACACAGACTGGCAAATTGGATAAAGAGTCAAGACCCATCAG<br>TGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>TACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCATATCAACAGAATATACATTTTTTTCATCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAAGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAAAGAAATGAAGGCAGAAATAAAGATA<br>TTCTTTGAAACCAATGAGAACAAAGACACAACATACCAGGATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCCACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCGTAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTCAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACACAAATAAACTAGAAAATCTAGAAGAAATGGATATATTACTCGACACATACATCCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGAGCTGAAATTGGGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAACCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACTGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACGCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACGGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACTCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTTCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCATGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAGTGCCATCCCCATCAAGCTAGCAATAACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAACGCTGCATACCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAA<br>ACCATAAAAACCAGAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCGAAAACACCAAAAGCAATGGCAACAAAAG<br>CCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAATAAAAAAGCAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACCTATGTTTATTGTGGCATTATTCACAATAGCAA<br>AGACTTGGAACCTACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTTTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACATGAAGGGGAATATCATACTCTGGGGACTGTGGTGGGGTGGGGGGAGCGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAAAGTATAATAAAAAAGAAAAAA</font><font color="green"><u>AAAAATATATTTCTTTTG</u></font>cgcaagcgatcatctttttatcctccttgtctcttttgttaaatagctacct<br>ttataattttttttctgattctctcttctctcatcagttctaggctcaatccccattgaactttatcctcttcattggacatgttgtgatttcagtctcc<br>ttgggaactttcatgtctggcttctcttcctggacccctttcctactcttcttcctttttcatccttaacctgactgtggaagattattgcaataatggt<br>aagtgaagcctgtttttatactcttttgcaatataacaccactgttcctcccattaacaaatgatatccttatcttcagccccttgaatcttggctggtc<br>ttgtagttggtcctaacctatagagtgtgg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr18	47470231	47470232	2000516	0	-	AC208322;AC231415	NA;NA	NA;NA	LINE	L1	L1HS	tagggttttcatacagtataaaggagttaatataggtaaagcatttagaatgcatcctgacacatggtaaatacattaatgttacattatggttgttgtt<br>gcttctgttgttattattactaataatatatttcaaactagctaaagtggattcttttatctatgagtaaaagcacagattaatacaaagagcaacatgc<br>ttcgtacttgaatttttaggtaaagaagtattaatatatatatgcattggtgcctgaaaaggccaagaaactatagtttagaaagtgtataaatggatga<br>agacaattaaaaaaaatcattaatgaagtcagggaattacaggatggaatgcagaatagggacaatcaactgtgttacaagaatat<font color="green"><u>GAAAAACCTCACTG<br></u></font><font color="red">GAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTTAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCTCACCCTGCGCGAGCCGAAGCAGGGTGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGCAAACAAAGCAGCAGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAACTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAA<br>AGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAATGCAGTTCCTCACCAGCAACAGAACAAAG<br>CTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTT<br>GAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAAC<br>TATGTGAAGAATGCAGAAGCCTCAGGAGCCGATGTGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCAAGAAGGGAA<br>GTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGT<br>GATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAA<br>TACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGC<br>AGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACA<br>AGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCA<br>AAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGG<br>GGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGAAAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACA<br>CATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCA<br>CCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATATATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAAT<br>TGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATAATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTGGACACATACACTCTCCCAA<br>GACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>CAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTG<br>GTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCAAAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTT<br>TATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATGCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGAC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACAC<br>TTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>CATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAGTAGCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGG<br>TGGGAATTGAACAATGAGATCACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG<br>ATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATCTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAA<br>AACTTAGAGTATAATAAAAAATAAAAATAAAAAAAAAAAAAAGAGAAAAAAAAAAAAAAAAGAAAG</font><font color="green"><u>GAAAAACCTCACTG</u></font>aaagaagtatagagaaaagg<br>tgctgatttaagcaactttggaaatgagcagagaccttaagactaaaggcaaaagaaactgtacacaagcactgtatccaaactgataaaggctttccta<br>cacagattacaggcaagtggaggaggctagaatgactcatatggtaatagattagagttaaagatgttagaattaactctgctgggtgtggtggctcatg<br>cctataatcctagcactttgggagtccaaggcaggagaattgcttaagcccgagttcaagaccagccttggcaatgtagtgaaacctcatctctacaaaa<br>aacatgggaagtagctgcgtgtggtggtgcactcttgtagtcccagctacttggaaggttgaggat	OTHER;OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr2	144342706	144342707	2000517	0	+	AC219161	NA	NA	LINE	L1	L1HS	ttacaaaattaattcattacattaaaagattaaaggagaaaatcaaaatcacccccatagatgcagtaagagcattcaataaaactcaatacccatttaa<br>taaaactctgcaaactaggaatagaagaaattttctttattctggtgaagagtaactgcaaaagcacatacagcaatcataagattatctttaagttcaa<br>gaatgtgacaaaattgctttctgtcactacttctattcagcattgcactaaagagtcttacaataagacaagaaagagtaataaaaattacacgaaagga<br>aataaaaggaaaaaataccattatcatgattcaaaaacaatattactgtctacattttaaaactctaaagacaaattgttagaatatat<font color="green"><u>AAGAAAATGTA<br></u></font><font color="red">AGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGTGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGTGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTATAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCGGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGACAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTCACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAATGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACAGTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCATCATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCGGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACAAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACATGAAAAAAAAAAAAAACAAACAAAACAAAGCAAACATGGAAATGTTTGTTA<br>TTTTAATTGTTATGATGGTTTCATGGCTGTTTGCATGTGTCAAAACTCATCAAATTTGTGTACGTTAAATATGTGAAACTTATTGTATGCTGGTTACACC<br>TCAATAAAGCTGTTAAATTTTTTTAAATTTAAAAATATTATTTCAAGAATAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAATGTA</u></font>atgaagttaatatatacaagtgga<br>acatgaattaaactacaatctatacatcccaacacaagataatttttaaaatactattgacaataacatctgaaaacataaagtacctaaggaataaatc<br>caacaagatatgtaagatatttgagtaggatattataaaactttactgaagaaatataataaaggcttaaaagcaaaggcatactatgttcatggttaat<br>cataaagatttttattctgccaaattgatttttagattcattatgattcacaacaaaccccaaccagaacatattcctgcttttggtaaaatagagtggc<br>tgtactttttgctctaaatgcagtacaactaaaaacccgaaacacacacacacacacacacacac	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr16	69585525	69585526	2000518	0	+	AC207451	NA	NA	LINE	L1	L1HS	tgtatatttaacattacaagaaactgccaaccagttttccaaaattgttgtaccactttacactaccacctgcattgtatgagagttctcgttggtctgc<br>attctcatccacacttggtatttagtcttttacattttagccattcaaatgagcatacggtgatatcacattgtggtattcattaataggcgtagtttaa<br>aggaaaattctatgtcatttactatataatatagtaaatgatatagtctatgtctatttcatttactataaatgaaaacacaggattatctagcatattt<br>agaaaaatcaacacaatggaaaaaaatcaatgtaattattttcttgcctggtgaaggctctgagatgagctctggttgctctttt<font color="green"><u>AAGAAGGGAAAACAC<br></u></font><font color="red">CGGGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGA<br>GGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCAC<br>CTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCT<br>TTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACGATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCA<br>GTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACT<br>GGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGC<br>AGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGT<br>CCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTG<br>AGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAA<br>ACCGCAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAG<br>AACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAA<br>AGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCT<br>CGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAG<br>AAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACC<br>TGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGGCAACATTCAGATT<br>CAGGAAATACAGAGAACGCCACAAAGATACTCCTAGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGT<br>TAAGGGCAGCCAGAGAGAAAGGTCGGATTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTG<br>GGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTT<br>ATAGACAAGCAAATGCTGAGAGATTCTGTCACCACCAGGCCGGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGC<br>CGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATC<br>AAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCA<br>GTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAA<br>AGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAAT<br>TCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGAC<br>TCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAG<br>CTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAAT<br>TGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTC<br>AGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAA<br>AGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGC<br>CTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGG<br>CAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACATAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCA<br>ACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCC<br>CACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACT<br>CTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTC<br>CAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAAT<br>CCTCCCTAACTCATTTTATGAGGCCAGCATCATGCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAAC<br>ATTGATGCAAAAATCCTCAATAAAATACTGGCAAATCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGC<br>AAGGCTGGTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGC<br>CTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCC<br>ACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAG<br>TGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACAT<br>GATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATCAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAA<br>TCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAA<br>TCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATG<br>CTCATGGGTAGGAGGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTC<br>ACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCACATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCA<br>CACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCC<br>CCCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAACAAATGGTGCTGG<br>GAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGAC<br>CTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACACAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAAC<br>AAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAG<br>AAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAACCCCATCAAAAAGTG<br>GGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAACATTAAAAAAAAAAAAACATTTCACACAGACAGAAACATAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGG<br>GAAAACAC</u></font>tgggctggcatgatcttggctgggcttattactgtatggaaggaggatccacggtgtcccctctttacataccctattgcacagggtcttat<br>acatgcagcccaagctcaacagatgtttggttgattgaatgaatggatggatgcatggatggatgcatggatggatggatggatggatggatggatgggt<br>gtgtggaatgttgaatgagaacagttgaatagcatagagggtaatctgactattctgcaccttgtctgtcaacctgggataaagagtggcgatgggaaag<br>catggagaattcacagagtatggaaaagctcttttcatttttggcttgagcttccatttgacttgttccagaccagatgtctctagctgactt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:HYDIN:NM:032821:23/86	
0	chr7	56619985	56626009	2000519	0	+	AC217505	NA	NA	LINE	L1	L1HS	gcatcagccaggcaaagaccccatttgcataatagaagagtggtgggggcagccagctttctcgtgcactgtgtaaacatcacacctggcccaaccaatc<br>tttgggccctatgtaaatcagacactgcctcctcaagccagtctataaaatctggtgcactttgctgcaggccggaagtccactcgggcaaccctctccc<br>tcccagtagagagagctattctcctttctctttcttttgcctattaaagctccacttctaaacccacttcctgcatgtccacatactcaatttccttggc<br>atgagacaacaaaactcaagtatttaccccaaacgacaccgcttcattatgttgtaagtgattaatttattagttaaaattgctatgtt<font color="green"><u>AAGAAATATAG<br></u></font><font color="red">GGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCAACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGGGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGTGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATACTGCGCTTTTC<br>AGACTGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTATGCCCATGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCAGCAGCGAGGCTGGGGGAGGGGAGCCTGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGTCAGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTACCTCCTCAAGTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAAACAGGACATCCACGCCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAA<br>GATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAGATGCAGAGCGCCTCTCCTCCTCCAAAGGAACACAGTTCCTCACCAGCAACGGAACAAAGC<br>TGGATGGAGAATGACTTTGACGAGCTGAGAGAAGAAGGTTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTG<br>AAAACTTTGAAAAAAATTTAGAAAAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGAAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACT<br>ACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGTGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGTGAGACGGGAAG<br>TTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGT<br>GATGCGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTACCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAATGTTCAGATTCAGGAAA<br>TATAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACGTAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGC<br>AGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTATAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTACAGACA<br>AGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCA<br>AAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATGTAAATGGACTAAATTCTCCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTGAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGG<br>GGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAGGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCCACAAAGAGACTTAGACTCCCACA<br>CATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGCAATTGAACTCATCTCTGCA<br>CCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACGTTTTTTTCAGCACCACACCACACCTATTCTAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAGTCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACAACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCCACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAGAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGGAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTTGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAGTAGGCCAATAACAGGAGCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCTGAATTCTATCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCGATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAGGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGATACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAACGCCGCATACCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATTTCCAAAACACCAAAAGCAATGGCAACAAAAGC<br>CAAAATTGACAAATGGGACCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAATACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACTTATGTTTATTGTGGCATTATTCACAATAGCAAA<br>GACTTGGAACCAAGCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGTCACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTGGGGGGAAGGGGGAGGGGTAGCATTGGGA<br>GATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAAAGTATAATAAAAAAAAAA</font><font color="green"><u>AAGAAATATAG</u></font>cacattttaaggctgctgatgcacagtgcaataactgccatatacaagtatgacaccaattta<br>tactaggagctcaggtgcagtggctcacgcctgtaatgccagcactttaggatcccgggggcaggtggatcacttgaagtcaggagtttgagatcagcct<br>gacccaaatggcaaaaccccatttctactaaaaatacaaacttttttttttagtagaaaaaaaacatttatattagtgggcatggtggcacactccttta<br>accctgtaagggtgagtcaagagaatcacttgaacccaggaggcagaggatgcagtgagttgagatcacaccactccagcctaggtgatagagcgagact<br>tcttctcaaaaaaaaaaaaaaaaaga	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr5	13469608	13475853	2000520	0	+	AC208391	NA	NA	LINE	L1	L1HS	ggaactgctgcagagcccattttcttttatagtctctattcagggatggtagcttcacgtgtcattgtgtacattggtcaaaccaatatttttaagttgt<br>ggaaaatgctccctccagattccaaagatgcctagtagtcattttgcttttcttcttctatgaattttacttcatagtggatgtttcaacatatcccaga<br>caacagaagctcttggaaacatcagtaatgcggtgggtcctttaattgtcacagagtttacctcactacctctgaagtgagtgtgtcttcctaggacttc<br>aagcacacttgtcatttatctggatcatagatttgttttgctctaaaacccatttgcattgctatctgttggttatggccccat<font color="green"><u>GAAAATCACGTCAACC<br></u></font><font color="red">CGAGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCAACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGA<br>GGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATCGCCTCAC<br>CTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCT<br>TTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCA<br>GTCTGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACT<br>GGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAATACAGCAGTAACCTCTGC<br>AGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGT<br>CCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTG<br>AGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAA<br>ACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAG<br>AACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAA<br>AGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCT<br>CCAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCAAG<br>AAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACC<br>TGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACATTCAGATT<br>CAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGT<br>TAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTG<br>GGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTT<br>ATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGC<br>CGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATC<br>AAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCA<br>GTGTGCTGTATTCAGGAAACCCTTCTCACGTGCAGGGACACATATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAA<br>AGGCAGGGTTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAAT<br>TCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGAC<br>TCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAG<br>CTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAAT<br>TGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTC<br>AGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAA<br>AGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGC<br>CTACAAGAGAAAGCAGGAAAGATCAAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGG<br>CAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCA<br>ACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCC<br>CACAGAAATACAAACTACCATCAGATAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACT<br>CTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTC<br>CAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAAT<br>CCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAGGAGAATTTTAGACCGATATCCTTGATGAAC<br>ATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCAAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGC<br>AAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGC<br>CTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCC<br>ACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAG<br>TGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACAT<br>GATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAA<br>TCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGCAATCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAA<br>TCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAAAACATTCCATG<br>CTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTATAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTC<br>ACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCA<br>CACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCCTGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCC<br>CTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGG<br>GAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAATGTTAGAC<br>CTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAAC<br>AAAAGCCAAAATTGACAAATGGGATCTAATTCAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAG<br>AAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCTATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACGCCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAAATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAGAAAATTAAAAAGTAAAAAAAAAAAAAAAAAAAAAAAACTGTAGATCCAG<br>AAATATTTAAGAAAGATAAATAAATTAGAAAAATAGCACAAACAGAAAAGACAAAAATAAGTCATAATATATAATCTTAATAATAAATATAAATGAATCA<br>ATGCTCTAGTTACAAAAAAAATTTGCTAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATCACGTCAACC</u></font>ttgtcctttgggttgtaattatgtctaccttgttttg<br>gatggttaaggtatgccatctgtctcctcttattttcctatcatcctttcatccccattgctattagggaaccctgttctgtaagactagttctactatt<br>aacccaagtgttccaagtacagccactattgggctccttctcaccaacacatttatttttgctttgagaaattagagtgtcttccttgccatcccatgga<br>gcataggtagctggtgggtgttccagtttttcatagcatatcatctctagaagatccaattatctcagttttttttccctttcttccggcatctgccagg<br>aagtctagcattcctacttactatgggccatagctttctccaagctt	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr14	67854008	67854009	2000521	0	+	AC210873	NA	NA	LINE	L1	L1HS	ttccatatttttgcttaccaaatggtatgacctacttgaaaaaaaatgagaagctgctgcagaacctgcctcaggtgtcagcatcaattaatgtttcatg<br>gttataatgagaaggagcagaagatgagagtctaagctccccttaaagggcttatagttcactttgaacatctcatcacatatttatttacgtgccctct<br>cattttcaagtactgtgttaggtactgcagacacatggatagtgagacaatgtctctacccttaagaactagtagtccagtggtttctgttaaatttcag<br>tatgatgtcataaattctgtggtaaagtgccgtgtgatgtcaggaaggtcatcagtaaagactttctagagttgatgttact<font color="green"><u>AAGAAATCAATGACATGG<br></u></font><font color="red">GGCGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAAGAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAGACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGTTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCTTATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATATGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCAGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAAACATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATCAATGACATGG</u></font>ttaataagctcactagtcctgctgacactgagtccctaccctcgg<br>ctccatttggatgaggctctgtgagatccagtccctgccttgggggctttgtcattcatgagagaaacaagtccatcactccttccagttagatatctgt<br>gaaaaggtggaaaaagcaaagaacacttggaatttgggagagaaagagagaccatttaagggaagaattgcatttgagttgaattttgaaaaaattgaga<br>taggcttttgcccggcatgggtaaaagtgggaaacagtccagaagaaagatgtgagcaaaggctcagggacaggagaacttgggatgtgttctgagaaca<br>gtgagtaatccaaaatggattgatacatatatcacat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:RAD51L1:NM:002877:8/11	
0	chr2	23044522	23044523	2000522	0	-	AC229893	NA	NA	LINE	L1	L1HS	acactggaacaaagatgagggaagtaagaagccaggcagttaggcttccctgagcacaccgtctgatgtggttggctgtgtccctgcccaaatctcatct<br>tgaattgtagttcccgtaatccccatgtattgtggtaggaacctgctgggaagtaattgcatcatgggggtggttacctccatgctgttcttgtgatagt<br>gagtgagttctcatgagatctgatagttttatcggggggttttttcccatgttcaatctgcacttctccttgctgccaccgtgtgaagaaggacatattg<br>gctttccctttcaccatgattgtaagttccatgaggcctccctagccatgcggaactgtgagtcaattaaagttctttccttt<font color="green"><u>ATAAATTACCCAGTCTC<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGATGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTATGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCAGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCCCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCACACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGAAATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAAAGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAGAATGGGAGAAAATT<br>TTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGTCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAATAAATAAA</font><font color="green"><u>ATAAATTACCCAGTCTC</u></font>aggtatgtcctaatagcagagggag<br>aatggactaatacaccactcatgcaattgcacaggaccccacacttggtttaatgctctgctgttgccatcttgtgattcttaccaatttgtagtgaaaa<br>gcatttttcattttacactgagcatgaaacattatgtagctggtcctgggccaggaatgtgttatccagggaaaagcattctaggcggaagacactagta<br>agagcataaggcctgaaatgaacaagaaagaggaaggggaccagtcaactggagtgggcgggcaagagaacagagtgatgggagaggacgtggcaggggg<br>cgttgagattgggcccttgggaggactgtggctttcactccgagcgagatggcaaagc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	81951555	81951556	2000523	0	+	AC211781	NA	NA	LINE	L1	L1HS	tttacttgtgttcaattttgctaatttcagtatattgaaatatgccaatgtgctctttttcttgtatctttcttggaactcatacttgtaattttctaaa<br>tagactagagttaccataatcacctcttctttgacccatgagatatttagaagagctttccatctttctgggtttttcagatggtttttttttttttttg<br>ccttttcttctgttgtttttaatcttgcatatgttgccctgaactcagaaaacatggtgtatataatttctaaccctgtaaaaatgatatataatccttt<br>tttgaaaaccaatgagaaattttaaaaagaatgtacatttttagccatgtacagagtttcaatatatgtcatttagaaatctta<font color="green"><u>AAATAAATTCATATTC<br></u></font><font color="red">CGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACACAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGTAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACACAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATTGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAACATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAACTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAATAAAATAAAAT</font><font color="green"><u>AAATAAATTCATATTC</u></font>attatatatgattaccaaatacttttattcttattttttgcata<br>attcatctgtcaaaagtggaaggtgctgtcttaacacttctgactaaactcattttaatagaggtttagatacataaatgatttttaaaattcactcagc<br>aaatatttcaggagcacctaatctgtaccccttaaatacagaatacctgctattatgaagtgctcatgatgggaagtattttatggaaaccaaaagaaag<br>tgaaacaaactctttatatactatatagttttatttcaattcatgtaagggctgtaaaggagacatagggtactttagatgtgcaataatggaatttacc<br>tgaaaagtcagaacattttttcctttttgtttttgtgtta	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr15	45294635	45294636	2000524	0	-	AC216176	NA	NA	LINE	L1	L1HS	gttcttgtaaatatatatgagctaaattcatatataaaacagtatctgaacaaaaatatattaatagcatatttgtgttactcatttaaaacacatacat<br>tatttgaaaaatgcccaacagttttaacagatccctgtgtagcaaaatgtgtttgtggtaactgtgcacaaccccctttaatatatctgtggacaaagaa<br>aagcatccttgatgttcaagggcaactataacctggttccaataatgagagtttagagaatgctcttttttccgttaaagtcttcagagaacaaagattc<br>tctagccacagatctttaatagcttctgtttagattcaggtagattgcacgatataaagtataaacagcagatgtttgtttgaatt<font color="green"><u>TAAATGCAATTGAA<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCCGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGCTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACTGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGACAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACAAAAAAAGAGAATTTTTGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTGCCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGCAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAATAAATAAATAAATAAATAAAT</font><font color="green"><u>TAAATGCAATTGAA</u></font>ttgtccatcaaaaagaataccattccaatttataattagcctc<br>aaaataagtgaaaatctatttctgtctagaatgaagcttaggtctgtttataaaacagtcatcagatcatgtgcttccactgcttatagacagatcatgc<br>tcattcttaataggcttttaaatccatgtaactgtcagcaaagaaagaacaaactaaatgtgcagatgatactatattagccaaactcactcttctccaa<br>cagtaagaagttctgatgtggtctttgtgcccatctgccattttctagaataaactcagactctatcctaagaaaactggtaagtacaggtatacatctt<br>ctgatttataccttaacaacaatttttaagtttacttaataac	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr21	22548077	22548078	2000525	0	-	AC211784;AC203635	NA;NA	NA;NA	LINE	L1	L1HS	tgcaactggtacttaaaagatttgaaggcaaagtgcaacttaatggaatatattagatcaatggcttaaatgtgagatcctttgttaagacttctgaaag<br>aataaaatcagtacttcttagttactctcaattagacaaaattcaccattttaaagatttgcccctctgaaaactaaatgcccaatgtatcagttaatac<br>attgagagacaattactcaaaaagaatttctgatgtgtctttcgagttacaactcttagaaatcagactcatagataatttgccaagtgtttaatggagt<br>tatgcccagaaacaagttggcagtctttatcgaaaggcactgagactgttcaaactccaaaaattctctgattccacatctttat<font color="green"><u>GAAAAGAAAATAGGT<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCCGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGATGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCAGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACACCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTTGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGACAAAAACAAGAAATGGGGAAAGGATTCCCTGTTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGAATCCCTTCCTTACACCTTATACAAAAATTAATTCAAGATGGATTAAAGACTTAAACGTTAGACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAGAATGGGAGAAAATT<br>TTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGTCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACTATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGG<br>AGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCGGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAGAAACATAGATCTAGGGGACACATTCCCCTTTTCCCTAGTGGAAATCAAGGTAGACCAAGACCAGTAGATTAAAACAGAAATCAGAGATG<br>TGCTATGGTTTGGCCCTGTGTCGCCACCCAAATCTCGTCTAGAATTGTAATCCCCAACTGTTGAGAGAGGAACCTGGTGGGAGGTGATTGTATCGTGGGA<br>GCCATTTCCCCTGTGCTGTTCTTGTTATGGTGAATGAGTTCTCATGAGATCTGATGTTTTTAAAGTAGCAGTTTCCCCTGTGCACACACACACTCTCTCT<br>CCTGCCACCTTGTAAAGAAGGTACTTGGTTCTCCTTCACCTTCCGCCATAATTGTAAGTTCCCTGAGGCCTTCCCAGCCATGCAGAACAGTGAGTCAATT<br>AAACATCTTTCCTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAAAAGAAAATAGGT</u></font>taagaaaatttctgtaagaaaatattatcctttgaact<br>ctccagaaatatctaaggaggatgaaaaaaaataaaggatatctcagagggtagagccagggaacatgaaggaaatatgggaagtcgctcactggaaaag<br>gaatatggcttcgtcagggagcatgctttcccctgaaactggaaaatatgacctatttgcccaattttgtttcagaattgctatggatcatgaaatgcat<br>gtggttatcatttttctccttttgaaatggcagcattttttgtcgttcttctattctgtgtcaccatcagaagttgtgtttgtgtagtgaaaataacatg<br>tttttcaatatggtgcctcactgatatccagcatcacagtgaatcac	OTHER;OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr9	7731408	7731409	2000526	0	+	AC206439;AC226592	NA;NA	NA;NA	LINE	L1	L1HS	ttgctttgcatcttccagcactttgtattcactaagtgccttatagtttattccttaatcatcatagaatccttgaaatagttttgccttgaaatattgc<br>catctctgttttatgaatggggaaactaaaagtgatattcaaagttacacacaaagaccaaagttaaaacccgtaagtcttaattacaagtagtcagcct<br>tccatatccatggtttccacatccatggattcaaccacctgaggatccaaaatattcagaaaaaaaaattccacagaatctcacaatgtaaaatttgaat<br>ttttgtggtgctgagtactacactgagtccacacagatgaaatgatgcgtaggcattgtattcggtactatcagtaatctacagatgatt<font color="green"><u>TAAAATGTAC<br></u></font><font color="red">CGAGTTATTGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACCGGTGATTTCTCCATTTCCATC<br>TGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCT<br>CACCTGGGAAGCGCAAGGGGTCAGGTAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGC<br>GCTTTTCAGACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTGAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACA<br>GCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGA<br>ACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTC<br>TGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTG<br>GGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACACCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAG<br>CTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGAT<br>AAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGTGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAA<br>CGGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGG<br>CAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAG<br>GCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGC<br>GAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGT<br>ACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAG<br>ATTCAGGAAATACAGAGAACGCCACAAAGATTCTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAA<br>TATTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGA<br>GTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATAC<br>TTTATAGACAAACAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGTGCTAAACATGGAAAGGAACAACCGGTACC<br>AGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGG<br>ATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCA<br>TCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAA<br>AAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATC<br>AATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTA<br>GACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACT<br>CTGCTCTGCACCAAGTGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAA<br>AATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAA<br>CTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAA<br>TAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAA<br>TGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGA<br>AGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGA<br>TCAACAAAATTGATAGACTGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGA<br>TCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATAC<br>ACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGA<br>GTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGG<br>AATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATG<br>AACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGA<br>TGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAA<br>AGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCATTAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAA<br>CCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACA<br>TAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGA<br>CATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAA<br>AAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGTCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAG<br>GAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCC<br>ATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTC<br>TTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGTCAAAAGAACAAAGCTGGAGGCA<br>TCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGA<br>GCCCTCAGAAATAATGCCGCATATCCACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGC<br>TGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTA<br>GACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGC<br>AACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGG<br>GAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCA<br>AAAAGTGGGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGA<br>AATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAA<br>ATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCAT<br>TTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCAC<br>AATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAA<br>AATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCT<br>CACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATA<br>GCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACA<br>TGTACCCTAAAACTTAAAGTATAATAATAATAATAATTAAAAAAGAAAAAAAAAAAAGAATGAAGTCAAGAAAAAAAAATAAAAAAATAA</font><font color="green"><u>TAAAATGTAC<br></u></font>aagaggatgtacatggattatatttaagaagactccattatacatgagacacgagcatctacaggctttggtatccacgagagtcctggaagcaatacca<br>catgaatactgagggagactgtatattccattgaatttggcctttttttaattttatttttctgtacttaactttgggttttctgtaatctcttcaagtc<br>aagtcaaaaggaaaaatctccacttgactttgcccaacctttattctgactttgtcatggctgaccatgatttgataacgtttccagcctttccaaacct<br>gagattttgatttcttgtacaagacttccacttctctttgacaacagtgttttacaaacttttcacagaaggatagcccacagaaaggaa	OTHER;OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr3	152631246	152631247	2000527	0	-	AC205797	NA	NA	LINE	L1	L1HS	acaccaaaatttacgtcttctgacttccaggctaatattctttgcatcacagggagcttgctcccatttctaaaaggattttccgtcctatgacacccgc<br>ccaggggtgattcaattcatgggagcacactgctggcattgagatgaggtatgatgaaatgggctattggtaaattctctagaaaggcagcacattaaac<br>aaaacaaaacaaaacaaaaacaccacaccagcactacaggcaagattactagggagaaaacactgtctcgatcatgctgtgtatgatgttataggttttg<br>atttatgagtcactatcagaagggtaggatggtgcagtggtaagaacattcacagtctgacagtttagtgctggcctccctgtatctg<font color="green"><u>AAGATCTTCGGG<br></u></font><font color="red">GATTGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACCGGTGATTTCTCCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCTGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATTCTCCTCAAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATATTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGTGCTAAACATGGAAAGGAACAACTGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCACGCTAAAAACTCTCATTAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACACAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAATATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCCACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACTATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGTGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAAAGTATAATAATAATAATAATTAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATCTTCGGG</u></font>aggccagctaactttattcat<br>ctgtataattaagggcattagctgatgctccctgaactctccagctttaaacaaaggacacctttgattccataggagtccccccaatgagaagaaatat<br>ttctagattctggtggaagcaaaaagaaagtatcttcactgaatttgagaaaaattggggctttcccaggaaaggaagcattcaagccaaaaccaaacga<br>agacagaatgaaaataccttgggctaaaccaaataacatgaacattgtactgaggaagatggtaccatcttgggagagccgccactttacgtttcgctgg<br>cttatttttaattttccgggagctgtctgttccatgacacacaggggtacttactggaaagctgctt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:MED12L:NM:053002:42/43	
0	chr10	36799293	36799294	2000528	0	+	AC208581	NA	NA	LINE	L1	L1HS	agtgggttgactctatgtgaagatgcacatccagagatttattgtccttgcccctgggtctatggagttataaagaaggaaggaattaagcatcttgtta<br>ttgaacggtcaaaaggaaaatgtcactgagtgagtgaccttaagcaagtcatgaaactgcacgagaagggtttaccatggagaagaatgaggggtccagg<br>cagaagcctccaagacaataaagagatgaagtaatgaaagggaactgagtgacccaggaggccagggctatgaaacacactctccaccggctgccactac<br>atcttgtctgatgaggtcaaccaccacattcaaaaagtaacatactatcttcttaatttaggttcctttactcaaaatgctgtt<font color="green"><u>TAAAATACCTAGTTCG<br></u></font><font color="red">GGGACTTCATTTCTTTCTTTATGATATAAAGTTTTGTTTTGTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCGCCCAGG<br>CTGGAGGGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTCAGGCCATTCTCCTGCCTTAGCCTCCCGAGTAGCTGGGACTACAGGCG<br>CCGCCACCACGCCCAGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGTTGCGATGAAATCGGGGAGGAGCCAAGATGGCCGA<br>ATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGT<br>GCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCACAAGGGGTCAGGGAGTT<br>CCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATCGCGCTTTTCAGACCGGCTTAAGAAACGGCGCA<br>CCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAA<br>CGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAG<br>GCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCT<br>TTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCT<br>AACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGATATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACT<br>AACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAACAGAACA<br>GAAAAACTGGAAACTCTAAAACGCAGAGCTCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGA<br>CGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTA<br>GAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCC<br>TCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAA<br>AAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAG<br>TTGGAAAACACTCTGCAGGATATTATGCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGAT<br>ACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGT<br>TACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAA<br>AAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTG<br>TCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAG<br>ACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTA<br>AATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCA<br>CGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGA<br>TAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAAT<br>ATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTA<br>ATACCCCACTGTCAACATTAGACAGATCAACAAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACAT<br>CTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTC<br>CTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCT<br>CAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAA<br>AGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAAAAAGCAGGAAAGATCCAAA<br>ATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAAC<br>TGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACT<br>AATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAA<br>TACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTG<br>AATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATT<br>CTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGC<br>ATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATAC<br>TGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAAT<br>AAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATG<br>CTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATCTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAA<br>AACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAG<br>GCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTC<br>TCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACA<br>GACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCT<br>CTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTG<br>AAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGT<br>TCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAA<br>GGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAAC<br>TATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCTTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGC<br>TGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAA<br>CCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTA<br>ATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACA<br>AAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTT<br>CTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCAT<br>CTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACT<br>GTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATA<br>CCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCTCAATAGCAAAGACTTGGAACCAACCCAAATGT<br>CCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACAT<br>GGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATC<br>ACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGAC<br>ACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAA<br>AAAAAAAAAAAAAAAAAGAAAAACTTTCAGTGGTCCTAACACAAAAAAAAAAAAAATAATAAAATAAAA</font><font color="green"><u>TAAAATACCTAGTTCG</u></font>taagtgcacaggtta<br>ttaaatatacattgctttgacctacactatggattaaagttgaaaattaagtcaataacataaatggttaatacacaagtcactgatttagaataagttt<br>ttttaatcaatgtgtttattttaaattttcattgggttggtttggaggtcattaggacattttgaaggtttatggtgtccatgaaggactggttccagga<br>ccttcctacgataccaacattagcagatgctcaagtccctgatatcaaatggcactgtatttgcatataacctatgcacattctcctgttactttaaatc<br>atttctaatttacttataatgcctaatgcaatgtaaatgctatgtaaatgcagttgttctattgtattg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr18	46124319	46130354	2000529	0	-	AC208178	NA	NA	LINE	L1	L1HS	aagaagaacattagagaaggaataaatgaagagaaataaaatttattttttaattcttaagtgatctaacagatagcaatttgttcaaaataacagctat<br>atttggtaattatagcttataaataaatgaaatgaattataacaatgttataaaggatgtgaggaaagaattggaaatactctcttataagatacttgca<br>ctacccatgaagtagtagtacattatttgaaagcagacttggagtagttgtaaatgtatattgcaaagtctaaggcaaccacttttaaaagttttaaaag<br>tataattaatatgttaaaagagagaataaaattgtataaaattctcaattaaaaacagagaaggcaaaaaaccagtgtcagac<font color="green"><u>AAAAAAAAACATACAAG<br></u></font><font color="red">GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGATGGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCATACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGTGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAATGGCGCAACACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGTTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGGGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGTATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGGGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGTCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>ACAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCATGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCCCCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAAAAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAATGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGAAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAACGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGACTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>ACAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAATATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATAGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACGCTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCACTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGC<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCCACCTACAACATGGGAGAAAATT<br>TTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>TGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCGAAAAATACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAATTAAAAAAAA</font><font color="green"><u>AAAAAAAAACATACAAG</u></font>aagggcaaaatagaaaacagtaacagatatggtagatactggtcca<br>attatataaaaaatcactttaaacatcagtggtctaaatataccaattaaaagacagacagtaggtcaggcgtggtgacttacacctgtaatcccagcac<br>tttgtgagcctgagttgggtggatcacctgaggtcaggagttcgagactagcctggccaatatggcaaaaccccatctctaccaaaaatacaaaaattag<br>ctggtgtggtggtgtgcgcctgtaatcccagctactcaggaggctgagataggagaatcgcatgaacctgggaggcggaggttgcagtgagccaagattg<br>caccactgcactctagcctgggagacacagtgagact	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr13	106234441	106234442	2000530	0	-	AC207964	NA	NA	LINE	L1	L1HS	aattatacatacaacaatataaaaaaatttaaaatataaatgggttatacatgtgttttaagcatgtaaaaaggggctggagccaagatggccaaatagg<br>aacagctccggtctacagctcccagcgtgagcgacgcagaagacgggtgatttctgcatttccatctgaggttccgggttcatctcactagggagtgcca<br>gacagagggcgcaggagagtgggtgcagcgcaccatgcatgagccgaagcagggtgaggcattgcctcactcgggaagcgcaaggggtcagggagttccc<br>tttcctagtcaaagaaaggggtgacagacagcacctggaaaatcgggtcactcccacccgaatactgcgcttttctgatgggctt<font color="green"><u>AAAGAACGGCACACC<br></u></font><font color="red">GTGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGTGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAG<br>GTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACTGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACC<br>TGGGAGGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATTGGGTCACTCCCACCCGAATATTGCGCTT<br>TTCAGACGGGTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCATGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGGGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGACTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGATACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAACATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGTGATCAACTGGAAGAAAGAGTATCAGCGATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACATCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGCATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAGTGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCATAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGTTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAGGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCAAATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTACTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATATATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAGAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATAGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGAAGGAAAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAACGCCGCTTACCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCACGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTAAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTACATAGCCATAAAAAATGAT<br>GAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTGTCACTCA<br>TAAGTGGGAATTGAACAATGAGATCACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGTCACATGTATACATATGTAACTAACCTGTACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAACGGCACACC</u></font>acgagattatatcccgcacctggctcagagggtcctacgcccacggag<br>tcttgctgattgctagcacagcagtctgagatcaaactgcaagacggcagcgaggctgggggaggggcacctgccattgcccaggcttgcttaggtaaac<br>aaagcagccaggaagctccaactgggtggagcccaccacagctcaaggaggcctgcctgcctctgtaggctccacctctgagggcagggcacagacaaac<br>aaaaagacaacagtaacctctgcagacttaaatgtccccgtctgacagctttgaagagagcagtggttctctcaccacgcagctggagatctgagaatgg<br>gcagactgcctcctcaagtgggtccctgacccctgac	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr4	59627161	59633191	2000531	0	+	AC217694	NA	NA	LINE	L1	L1HS	ttctcataataaatatcaaggacattctcattctttgcacagatgtgatagatgaagtcataatactatacaatgcatagaaaaaataattttttaaaca<br>aaacatggagtcctatatctgtaatgttggtggatgctgcatgcactaagggctccagagaacacagagtctagaacaatgagatagaggagtaatcgta<br>accacagaacaagagacaaaccatacttatcaatattgggaacacagatgatcaagatcagctgtttcccagccaacacttacaggtagctaaaagatga<br>gaggaaaacacaagcaaacaataaaaatggaaaactttttattcaatttggaggaaataactggtaatcttgaagaaagtaatttcaat<font color="green"><u>AAAATTTTTGT<br></u></font><font color="red">TGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAACATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTTGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCAGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTTCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAACTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACCCCTGACCCCCGGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCTACACCGAAAACCCATCTGTTCATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACAGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTAAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCAGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGAAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCCATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCTGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATTAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAGTAACAGAATCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGTCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATTAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAATTGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACGTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAGCAGCATGGTATTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGACACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCGTTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACTCATTTGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATATGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTTTTGT</u></font>attgaaaacaaaattattgggatctaaagaggaaaagtagatgtcaatcatatttta<br>aattattttgtattcaaagcaaatagacactggtagcatgaagaagtacaaacgatgataggttttagttttctttcaacaagggaattgttctaaccaa<br>atatgttagataataagatgaagcctatgcataaaaaggctaaaaatacaggagagagaaaagatcacatattggattacaggatatttgcaaaactcgt<br>atttctctgaaccattgtatctgcttttccttctgctttccttctgaatccattccattttctccactgcaaataattcattcattttttgagtgtctga<br>taagcaaatatcataatctagtgtggcttgat	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr1	177842001	177842002	2000532	0	-	AC216813	NA	NA	LINE	L1	L1HS	agaccttacacccttcacaaacattaacttaaaatggatcatagacctaaatgtgaaattcaaaactataaaactctttgaagataacataagataacac<br>tagctgactttggataaggcgatgagtttctagaaacaacaccaaaggcacaatacatgaaagaaataattgattgcctggtcttaagattaaaaactac<br>ttctctgtaagacaagtcaaaagattgagaaataagccacagaatagaagaaaatatttgcaagacacatctgataaaagactattattaaaaacaaaac<br>aaaacaaagaactcttaaaactcagcaataagaaacaatccaatttttaaaaaatgggcaaaatacctgaacagacctctcact<font color="green"><u>AAAGAAGATATACCAG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACT<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGGCGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCACCAGCAGGGGCACACTGACACCTCACATGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACAATCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTGAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGGTCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCCTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGTATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAATTATCTGTTAGAATTCTGAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAGATATACCA<br>G</u></font>atggcaagtaagcatatgaaaagatgttcaatatcatgtcatgaggggatttcaaattaaaacagcaataaaatatcactatacagtattagaatggcc<br>aaaatctaaaacactagcaacaccaaatgctgaccagcaatggggaacaacagaaacattcactcatcactggtgagaatgcaaaatggtaccaccactt<br>tggaaggcagtttagcagtttcctataaaaacaaacatatctttatctgacaatttagcaactgtactccttagtatttacccaaatgaattgaaaactg<br>ctatccacacaaaaaacccacacacgtttatagcaactttatgaggaaacaagcaagacgtccttcagtacaagtggataaactg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:TDRD5:NM:173533:4/17	
0	chr2	41904921	41904922	2000533	0	+	AC193155	NA	NA	LINE	L1	L1HS	ctggaagaattggacatctataggccaaaaaaagatccttgacctaatcctcacatcttatactgactcaaaatggaacaaagacccttaaatataaacc<br>ataaaactataaaacttttagaaaataaaacttgggagaaaatcttcaggatccagggataggcaaagaatgtttagacttgtcaccaaaagcatgatcc<br>attaaaggaaaaaatgataaattggacttcatcaaaatttaaaatttgctctgcgaaagactattgctgaggggatgaaaagacaagctacataatggga<br>gaaaatatttgcaaaccataatcaaaccaatagtcaacaaacgactgttatctagaatgtgaaaagaactctcaaaatgtgacaatt<font color="green"><u>AAGAAACATCAGA<br></u></font><font color="red">AGAGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATGAGCAATGGAAGATGAAATGAATGAAATGAAGTGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAACAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAACGATTCCTTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCTAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACATCAGA</u></font>taagaaaatgagaaaattacatagacatttcatcaaaaaggatatacaga<br>tgacaaataagcacataaaaatattttcacatcagtagccattaaggaaatgaaaaattaacaccacactgagatatctctatacacgtatcagaatgcc<br>taaaataaaaaactgtgacaacacctatctgggtgtggtggctcacgcctctaatcccagcactttgggaagccaaggcaggtggatcacttgaggtcag<br>gagttcgagaccagcctgggcaacatagtgaaaccctgtctctactaaaaatacaaaaattagtcaggtgtggtgattcatgcctgtagtcacagctact<br>cagaaggctgaggtataagaatcacttgaacccggga	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr5	21243490	21243491	2000534	0	+	AC208067	NA	NA	LINE	L1	L1HS	cttctattcaagtgttatttgaataaattatgatttatcttaaaagcagatccaccattattcaattatatttttcttatattccttttatttagtcata<br>tcttgttaagttacaattagttgaagtatgttgctattttaaaacaatgatggttttaataagaaaaaatatatattaaagcatttcacgagtgccatga<br>cattttgaaaaaatcagcccaacaaatctatccttttttgttgaaaacttagattaaaatttcaggtagagaggatgataacttttagatagtagatata<br>cctttctccactttggaaatgaaaactgaatcaaccataatattttccaacaagaaaatcgtccacctttctgaagcatat<font color="green"><u>AAAAATAACTTAAAATTCC<br></u></font><font color="red">CGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCAGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACCGACGCACCTGGAAAATCGGGTCACTCCCACCCAAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTATGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACACCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATCCTTTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTGGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAGAATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGTCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCGCTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCGTATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAGAATAGGGCGTCCGAAGGCTTCATTTGTTCACAAGAAGCCAACTGAAA<br>ATTAACATATAAAAATGTATAAACTAGTATAAGAAATTGTCAAAACAAAGTGAAAGCATAGTGGAAATAAATGCATTTAAGAAGAAACAAAGATAAAAGA<br>AGAAGGAAGGAAGGAAAAGAGGGAGGGAAAGAGGAAGGTGGGGAGGAAGGGAAGTAAGATAGCACTCTAGAGATGGTGAAACCAAAATAGTATGGTTTCC<br>TAATACATACTGTAAACTTATAAAAAATGTTGGGGCCCTTCAATTATCCTAATAATGTACAGAAAGCTATTTCACTAAAGTAGTGGAAGAATTCTTGCTG<br>TGTATTTTTATGATTAAATCTCTGGAAAAATGTAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATAACTTAAAATTCC</u></font>ttcaatattaaatgatgtagttatattcaa<br>taagtcgtgtttatattacatttataatatttaaatgagatttgaaaacaaacaaaataacccaccctagaacaaatgcatctcttagctagactgacaa<br>ataaacaaaaaaatgctactgatttcagaacatttgaatgataaagcctactcttgttccaacttaatttatcttaaacatgaaaatgtaacatgacctc<br>attattgacatggatcataaggtaaataaaaagtacattcatgaaattgatgatacaggttaaaaatgctttaaatagtttttcttttctaacttttcta<br>ttctagaaggtgttgataccaaagaattcttacactgcatagagataaaaa	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr14	30220578	30220579	2000535	0	-	AC216122	NA	NA	LINE	L1	L1HS	taataaaaattctattagtttaagaacaggacatatacagggaaccattagagggcgatagacttggctaccttggtaactcatagaactgctctcattg<br>aattgtatttaatattatatccctgggtttcatgaaagttgctatacgaaacagtcacatgaaatctataagggtaactgatattaattactacctcatt<br>acatcacttaatttattctagataatgcccaatatgagcaatgtcttttgtaatgtgatgctaagaaatggtttgcttagaataaaaaacagaaaatctt<br>tctgacagaggtttttttatcttaatcatctctctcttttttatcttggctgtgagaaaattcaaagccaaatttgagaatt<font color="green"><u>AACATTATAACTATTGAG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGTAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACGTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACAAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAACCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCTGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACATCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATGTAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCACATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAACAGAACCCAATTCTAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACATTATAACT<br>ATTGAG</u></font>cttttactgaattatttgtgagcttttatcagattgttttcattctatgtgctatttgagggagctgccttaaatctgttttagaatatgaaca<br>caatatttaatctgtaaatttatcctatgtattgacttatgctaaaaatatttaaattcagactaaaatgatctatataaaaaatttaaaatgtacacaa<br>aatgatctttatagatggcaagtataaaaaatataaacagaagtgaccttattatcacgaaatactgaaaactgctttatgatatttccgtggtatttgt<br>aaactgttgtcttgttttttatggctctcagaaatcacttagttttaatttattcaaccagtatgttgagcgcttttttttttttttt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:SCFD1:NM:182835:13/24	
0	chr15	54038445	54038446	2000536	0	+	AC207983	NA	NA	LINE	L1	L1HS	tttatttttttttccctaaatgtctgatagctgcatccagtgatatcatgtgggcctggagttttctttgtgggaaggacaaattcaatttaattaacaa<br>caaattcaatttcttttaacaacaaattcaatttctttcaataataaacatctattaaagttttgtatttgttctgtggctagttctgaaatctgtgtct<br>ttcaagaatattatctacttcactaaattgtgtgtacttctttactgatacaaaattgtacaaaatgttttctttttatctttttcatttccacagggtc<br>tatagcaatgccccagttttcattctcattaccagtaattagtgccttctctctaactcttgatcattctagctagaggttt<font color="green"><u>AAAACTTTAATTGATGTC<br></u></font><font color="red">CGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACTGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCAGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAGGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGGAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ATTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAACGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAACCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAGTTTTAAATTTAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTTTAATTGATGTC</u></font>ttc<br>aaataacaagcttttgattacaataattttttttctaccattgtccactttctctttcactgattttggcccttgtctttattatttcttccctctactt<br>attttagaattcattcgctcttctttttctaatttattaaggtcagaactcaaaacattcatttatatcttgctccttttctaagttaagcattttaaag<br>acataaacttccctctgaatataactttagctgcattccacaattgtgatattgctgtattttcattttcattcagttcaaaatgttttcttctttgaca<br>tatagattatttagaagtatactaattaaattccaaatatctgcagtttttctagatcttaatattattggtttccaat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:NEDD4:NM:006154:2/29	
0	chr20	17808936	17808937	2000537	0	+	AC207480;AC225623	NA;NA	NA;NA	LINE	L1	L1HS	gcacgaggcatcatccaagtgacaggcaactgagccagctcctcagagcagagcgctgtcgttgtcccttctcagagaggacacccagggccagaggcaa<br>aggaggaaagcacaagtgggtctgctaggaactaatttaaagaagcaagtcagctgggctcggtggctcacacctatactcccagcgctttgggaggcca<br>aggcaggaggatcacgagcccaggcattcaaggccagcctgagcagcatggcaagaccttatctctacaaacaaaaattaaaaaaaaaaaaaaaaaagaa<br>caagtctctggggcctgtgcaaagggcagcagggtgactgggtccccggagatttgggttgggatattcaacacgtgccttggagaat<font color="green"><u>GAAAATACAGTC<br></u></font><font color="red">CGAGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGTCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCATCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCAACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTACTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCAACAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCACAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCGGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAAAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAGCACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTGCAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAGCAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCCGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCAATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCAACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATGAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTCCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCTAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>AAATTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACACGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGATGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAAAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATACAGTC</u></font>aggtttgggaacaaccacttcaaccccgggggttgaaatatgc<br>ccccatctaactgcccactgctcggggcttctgaacgtttcagcccctccgttataaacaagggaacaggaaacccaggattgccctccccaccaaaggt<br>gtatctgtaggaatgttcaccatagccttgttttttgtttgtttttttttttgagacagagtctctctctgtcacccaggctggagtgcagtggcacaat<br>ctcggctcactaaaacctctgtctctcaggttcaagcgattctccagcctcagcctcttgagtagctgggattacaggtgcctgccatgacacttgacta<br>atttttgtatttttagtagagatggggttttgccatcttggccag	OTHER;OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr2	143727264	143727265	2000538	0	+	AC225318	NA	NA	LINE	L1	L1HS	cagagagctaaatctagatgacttgcatcaatatttgattagatacattagctggtcgaactctcaaatgatcagaataaacatgattatgtcttaaaaa<br>catggtattaaggcattgttggacgttggagtgtatgtgtgcaatggtttcattacctgcagaataatgaagtgtttcttcctgactgaaaaagaccatc<br>atagcttcagctgatgtgctacattggaaatagctttagaattccaagtttgaattaggcttggtgttcaatctcagtctatgaattatagattacagat<br>agcaaatgactattgagatttttggttcaaggaaaatcaaagaagagcaaaattagaaatattttaaaatttgaaatctgtcttt<font color="green"><u>AAAAAGTTTGATGGA<br></u></font><font color="red">AGAGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACAAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGCCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAACCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATCGTCAGATTCACCAAACTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCTGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACG<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATGTAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATCTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGTTTGATGGA</u></font>ttagcaattgtatgccatgtaattacaatgtctg<br>cagagaagttgaacttaaaatgaataggaaaacaaacaaaaaattgtatgtgcctgagaaatgttgcaagtctcagaagcacacatttgtgacaaccaaa<br>aatggacagatttcatttatttcatttgttcatatatgctgtttggatgtttgagttgttttctctttgtactgaaatccaaattttccttcctagttga<br>aatcctatcaaactgttgacatggactgaatcttatttgattgctatgtggaaacataacaatgacaacattaattattaagttttggtattcaacaact<br>ttcagtaaatcagaatgatacttgctaagtttaagaatatctgcatatttt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:ARHGAP15:NM:018460:6/14	
0	chr6	13299013	13299014	2000539	0	+	AC206597	NA	NA	LINE	L1	L1HS	ccttgattacttccttactccaaatacagtcacattgggggtgagagtttcaacagatgaatttaggaggtggggggacacaattcagtccacagcatga<br>ctcaaggacaaaaattatctagttcttcaaaaattagtcatatactcaaggcacttggttataaagaggaggatctgagttcagttgggtcgggtttcaa<br>agaacagacccaaaggagacagtttgtgtaagagtcaggagcaggggtaaaccacatgggaagcatctgaccacagttagagattactgacacttcagca<br>aagaaaggaaactgaggcttatccttgaaaacaagtcctactgataatacacacctacccaggacttatttgcacagtggtt<font color="green"><u>AGAATTCAAAATACAAGG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAACCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATTATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACCCAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAATTCAAAATACAAGG</u></font>aaacttaatatattctcagaacttagttgattgc<br>tcatttcaatgttaccaaagtattcgctactacaactttgcctgacaaatggtgtccatgacctgtgttattttcagccccagcatgtgtacctgtgtaa<br>caagaatcctctctccatgcttgaccaatattcctggttatagccatctctctagttttgtggactttttcactgttctacagtcacatgctgctgcgta<br>atttcattatgtgtctctgtttttctctgatgctctctctcccccattgatccccacattcccaaccctccatgtcctcctctccaaccctccagaacca<br>cctggctacttctgcctctgtccctgccttccctcccagtaatcccag	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:PHACTR1:NM:030948:6/14	
0	chr1	84290528	84297217	2000540	0	-	AC207443	NA	NA	LINE	L1	L1HS	acaaaagattagtcaaagatctaatattatttaaatataaataacacctacaaatcttatttacaagtaagatgaaaagtggtaaagaaaattagcagtc<br>aaccccaaaacagccaaaaaatacttgaaaagaaattcagatttatacatgcaaaataaaataataataggataagattctctacatatctgattcataa<br>ctaccataaagaatgataacactttatctaagacttgttaatatatgtgttaaaaggtatttttatattgtatggaagagaggattaatttgtatgattc<br>acttggagaacaatttgacatcctatttctatcaatgtattataaaaaggtggaaagcaaaaataatgagttaataaatataacat<font color="green"><u>AGAAAAACAAATCA<br></u></font><font color="red">GGGTGGTCTCTTCACATGGACGCGCGTGAAATTTGGTGCCGTGACTCAGATCGGGGGACCTCCCTTGGGAGATCAATCCCCCGTCCTCCTGCTCTTTGCT<br>CCGTGAGAAAGATCAACCTACGACCTCAGGTCTTCAGACCGACCAGCCCAAGAAACATCTCACCAATTTCAAATCCGCCACATCTCCAGCACACAAGAAC<br>TTCCAAACGCCTGAACTGCAGCGGCCAGGCGTTCCTCCAGAAACTCCTCCCCCAGGAGCTCTCTACAAGTGCCAGAAATCTGACCACCAGGCCAAGGAAT<br>GCCTGCAGCCCAGGATTCCTCCTAAGCTGTGTCCCATCTGTGCGGGACCCCACTGGAAATTGGACTGTTCAACTCACCTGGCAGCCACTCCCAGAGCCTG<br>TGGAACTCTGGCCCAAGGCTCTCTGACAGACTCCTTCTCGGCTTAGCGGCTGAAGACTGATGCTGCTCGATCGCCTCGGAGGCCCGGTAGACCATCACAG<br>ACGCCGAGCTTTGGGTAACTCTCACAGTGGAAGAATTGTAGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCG<br>ACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCG<br>TGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCT<br>GGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCT<br>ACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTT<br>GCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGG<br>GCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGACACCAGTGGTTCTCCCAGCACGCAGCTGGAG<br>ATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGAGGCACACTGACACC<br>TCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTG<br>TACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCC<br>TCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTAC<br>TCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGT<br>GCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATC<br>AGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTAT<br>GTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACT<br>TCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGT<br>CAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGAT<br>CTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAAC<br>TAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGA<br>AGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGA<br>GCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACA<br>GACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTATATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATG<br>GAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCTTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGAC<br>AAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAA<br>AGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACA<br>GAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACA<br>TTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACT<br>ATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGA<br>CTACTGGGTACATAATGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCACTCAAA<br>GCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAA<br>AGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAAT<br>CAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACA<br>ATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATC<br>TAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGT<br>GGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTT<br>CTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATACTGATACCAAAGCCGGGCAGAGACACAACCA<br>AAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTAT<br>CCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAA<br>AACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGT<br>ATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACA<br>GGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAA<br>GAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCA<br>GCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATT<br>CACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATA<br>AAAGAGGATACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCA<br>ATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTC<br>AATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAA<br>AACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAAT<br>GGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAAT<br>CAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAG<br>GACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTA<br>CCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACA<br>AATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATG<br>AAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAG<br>GAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCG<br>ATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACA<br>TGCACACGTATGTTTATTGCAGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACA<br>TATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGGCATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATC<br>GCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGA<br>CTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTA<br>TACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTGTAAAAAAA<br>AAAATTATAAATAAAACAAAGAAGAATATGTGAGAGGAGCTGAATGTGCCCCATAAAGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAACA<br>AATCA</u></font>acaaattagaaaaaaattgactatataaacaaatccaacccttgtagcttcaaaatgagatacacaataatttaggcaaagactttaccagccta<br>gtcatgatccaaaaaaggatgagactatcactagatccccaaaaatgccaaaatgttgcggtcccaaagaactgcattttgacagaatagaaaaattaac<br>atagtttggggttgctatggtttgaatatttgtatttccttaaaaattcatgtggatatttaatccccagtataacagtattaagagatagggccttcag<br>gaggagatctagtgccttataacagggctggagggaactagctaggcccttttttgcccttccccctttcatcatgtgaggacacagcaac	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr17	62067757	62067758	2000541	0	+	AC209294	NA	NA	LINE	L1	L1HS	atagctccagaagtaatagctttggtggaaaccgtggtatgtgcaaatttcaccccataaatagaggaaacataggtattcattatattaaaacatgatg<br>cgggccaggtgtggtggttcacgcctgtaatcccagcactttgggaggccaaggctggtgcatcacctgaggtcaggagttcgagaccagcctggccaac<br>atggtgaaaccccatctctactaaaaatacaaaaatacccacatcgtggtggatgcctgtaatcccagttactcaggaggctgaggcaggacaatcgttt<br>gaacccaggaggcggaggttgcagtgagctgagatcgcgccactgcactccagcctgggcgacgagcaagactctgtctc<font color="green"><u>AAAAAACAACAGTAAATATC<br></u></font><font color="red">CGAAGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAG<br>GTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACC<br>TGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTT<br>TTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAG<br>TCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTG<br>GGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCA<br>GACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTC<br>CCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGA<br>GGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAA<br>CCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGA<br>ACAAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAA<br>GAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTC<br>GAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGA<br>AGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCT<br>GAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTC<br>AGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTT<br>AAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGG<br>GGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTA<br>TAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCC<br>GCTGCAAAACCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCA<br>AATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAG<br>TGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAA<br>GGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATT<br>CAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACT<br>CCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGC<br>TCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATT<br>GACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCA<br>GGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAA<br>GATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCC<br>TACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGC<br>AAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAA<br>CAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCC<br>ACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTC<br>TCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCC<br>AGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATC<br>CTCCCTAACTCATTTTATGAGGCCAGCATTATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACA<br>TTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCA<br>AGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCC<br>TTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCA<br>CAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGT<br>GTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATG<br>ATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAAT<br>CACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAAT<br>CCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGC<br>TCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCA<br>CAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCAC<br>ACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCC<br>TCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGG<br>AAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACC<br>TAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACA<br>AAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGA<br>AAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAA<br>GTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATG<br>CAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAG<br>GAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGA<br>CCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATA<br>GCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATG<br>ATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACT<br>CATAGGTGGGAATTGAACAATGAGATCACATGGACCCAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCAT<br>TGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTA<br>CCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTCAAAATACAAGGAAACTTAATATATTCTCAGAACTTAGT<br>TGATTGCTCATTTCAATGTTACCAAAGTATTCGCTACTACAACTTTGCCTGACAAATGGTGTCCATGACCTGTGTTATTTTCAGCCCCAGCATGTGTACC<br>TGTGTAACAAGAATCCTCTCTCCATGCTTGACCAATATTCCTGGTTATAGCCATCTCTCTAGTTTTGTGGACTTTTTCACTGTTCTACAGTCACATGCTG<br>CTGCGTAATTTCATTATGTGTCTCTGTTTTTCTCTGATGCTCTCTCTCCCCCATTGATCCCCACATTCCCAACCCTCCATGTCCTCCTCTCCAACCCTCC<br>AGAACCACCTGGCTACTTCTGCCTCTGTCCCTGCCTTCCCTCCCAGTAATCCCAGTGCAATAAAACCAAAGATTAGACCACTGTGAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAACAACAGTAAATATC</u></font>taaaatatttagtggcgaagtcaccaccacccattgtgtgact<br>ccagagaatgatgcacagtctggtgttatcgaaccttgacttggggctggggagtggtggggcctgagcttggcttaatctaaaaacgtggtcctttcat<br>gactaaaatgagcattgtgcttcttctcctcccaggaccccaggagcaagcacaagttcaaaatccacacttacggaagccccaccttctgcgatcactg<br>tgggtcactgctctatggacttatccatcaagggatgaaatgtgacagtaagtaagttttcttttccagttcatagcgaggctctgtagctcatgctcag<br>ggtttgctgagcaaggaaggctcagtaacttttcaac	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:PRKCA:NM:002737:3/17	
0	chr22	15626066	15626067	2000542	0	+	AC209341	NA	NA	LINE	L1	L1HS	aaagaagacctctaggatggattggtagagaactgctggcatattgagccctctctctttgtatctggaactttcataattaccttagttctccatgcca<br>attttgcaattatctttgttctccacttcaaaatacatttatctctaacagaagctaagtacataaaagggaccttgtccagtggtacttatgaggcagg<br>agatgtgatatatttaaaattataaactaaaagctttctgacaccaaaagcataagtaacaaaacaaaaaataagtaaattggacatcatcaaaatttaa<br>aacttttgtgcaatcagaggacaaccggcagaatggaagaaaatattttaaataatatctttgataagggatcaatatccagaatatat<font color="green"><u>AAAGAACTCCT<br></u></font><font color="red">TGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCAGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCATGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACACCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAATCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCTTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTGAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAGAATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGTCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGATGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAA</font><font color="green"><u>AAAGAACTCCT</u></font>acaactcagcaataaagaaacaacccaattaaaaaata<br>ggcaaaggacttacatagaaattttcccaaaaaagatatacaactggccatcaagcccatgaaagacgctcaacatcactgattactaaggaaaagcaaa<br>tcaaaaccataataagataccacttcatacccattaagatggcaatcatcaaaaaaccagggaataataagtgttggtgaggatgtagccaaattgaaac<br>tcttgtgaattgccagtggattctacagtggtatagtcatggtggaaaagagtacagcggttcctaaattaaaaaaaaaaaatggaacataggctgggct<br>cagtggctcatgcttgtaatcccagcactttaggacaccaaggtggccaga	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	149522745	149522746	2000543	0	-	AC206420	NA	NA	LINE	L1	L1HS	taaaaaatttaaaactgataatgccaactgttgctgagaatgagcaatgactataacagtcaactactactggagagagtgtgaattattactgtcgttt<br>tggaaaaatctttagtagtatctactaaagtagaatatttcacaccttatgacctgctcccacctaacagaaatgaggacatatattcacccaaaggcat<br>gacaaccaatgtcatagtaactttatttataatcaccccaacatgaaaataatccaaatatccatcaacaatagaatggatacctataagccatattcat<br>acaatagaatactatataactgtgaaaaatgaactactactacacctaacaatgtagatgaagttcacagataaaacgctgtatg<font color="green"><u>AAAGAAGCCAGATAC<br></u></font><font color="red">GGGGAGGAGCCAAAATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAAAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATCTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCCCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCACTGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGACCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAGCCAGATAC</u></font>aaaacagtactg<br>ggtgatttcattttcaaataattcaaagacaggcaataacaatctatgttgatggaagttagggtgacaattacccttgagagttcggtgttgactgaga<br>gggtcaaagagagaggcttccaagatcctgggtggtggtcacatgtgtatatatatttataaaaaaaaattagttatgcacttaagtttatgtattttac<br>tatattatattcaataaaaattgagttaagaaaaacaaactgatggagaaagaaatcaagtcagatacaagaatttccagatgcagaataaactagggtt<br>actaagagagatactgaatttttgtgccctgaggtttattgttttttttttttttttttttttttactagaac	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:KIF5C:NM:004522:9/25	
0	chr14	66489635	66489636	2000544	0	-	AC207437	NA	NA	LINE	L1	L1HS	tatccatatgcaaaagaatgaagttgaagccttgccttacaccatacacaaaaattaagtcaaaatggatcaaatacctaattgtattataagagctcaa<br>ctatcaaattctaagaagaaaacataaaggtaaatcttcacgactttggtgatggatttttagatatgacaccaaaagtacaagcaacaacagaaaaatt<br>agattaactggacttcattaaacttaaaaacttttgtgcaaaggacattatcaagacagtgaaaagaaaaaatacagaaagggaggaaatatttgcaaat<br>catatctctgatagagtccagcatccagataatatgtaaagaactctaacaactgaataataaaaagaccaacaacccgctt<font color="green"><u>GAAAATGGGCAAAAGGTG<br></u></font><font color="red">GAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCAACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACCAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCAAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACACAGCTGGAGATCTGAGAACTGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCACCAGGGGAACACTGACACCTCACACGGCAGGGTATTCCAGCAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGTCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCCGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAACAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAAATCAGGATTA<br>AGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACAGCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAACTCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAAT<br>TGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTGTCCCAA<br>GACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACTAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>CAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTG<br>GTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGAAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTT<br>TATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCACCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACAC<br>TTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>CATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACGATCGCAAGAACAAAAAACCAAACACCGCATAATCTCACTCATAGG<br>TGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAGAAAGGAAAAAAAAAAGAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAAAATGGGCAAAAGGTG</u></font>tgaat<br>aaacatttttccaaagaagctacacaaatcatcaacaagtatatgaagagatgttcagcatccttagtcattagggaaatgcaaatcaaaaccacaatga<br>gatgccatttcacacccattcagatgataagaattaagaaaaaaagaaggcccggtgcagtggctcacacctgtaatcccagcactttagggggccgagg<br>ctggaagatcatgaggtcaggagtttgagaccggcctggcaaacatagtgaaaccccttctctactaaaaatacaaaaaattagtcaggcgtggtgccgg<br>gcacctgtaatcctagctacttgagaggctgaggcaggagaatcacttgaacccgggaggctgaggttgcagtgagc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:GPHN:NM:020806:8/23	
0	chr17	30159540	30159541	2000545	0	-	AC226751	NA	NA	LINE	L1	L1HS	ttttaaattttttgaaatgaagttttgctctcgttgctcaagctggagtgtaatgacatgatctcagctcactgcaacctccacctcctgggttcaagct<br>attctcctgcctcagcctccctagtagctgggattacaggtgcgcgccaccacgctcggctaatttttgtatttttagcagagacagggttttaccatgt<br>aggccaggctgatcttgaactcctgacctcagataatccgccctccttggcctcccaaagtgctgggattatagtcatgagccactgtgcctggccaaaa<br>ttactatacacttctaaacaaccagatctcatgagaacgcactactgcgacaacaggaccaagaaggatggtgctaaacaagtcat<font color="green"><u>AAGAAACTGCCCCC<br></u></font><font color="red">GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCAACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACACAGCTGGAGATCTGAGAACTGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCACCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAGCAGACCTGCAGCTGAGGGTT<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGTCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGTGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAACAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAAATCAGGATT<br>AAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACAGCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCGTCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGC<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTCAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATAATCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAGAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACTGCCCCC</u></font>atgatccaatctcttcccacca<br>gccccacctccaacattgggaactgaacatgagatttgtgtggggacacagatccaaaccatactgctgtccaattagaaggataatccattcatgcatg<br>aaggatcgtaaggcaacgtgtgtgagaaatagcacagacttgctgaggagcttcaaagtaagaaacacatagttgtggggataattagggaaaggttctt<br>ggagaaaactgggctttgatttgaattggtggaggggaggtgggagggcatttccagtaggaggaacagtaggagcaaaggcagggggcaataggtgttt<br>gttgggagggggcagtgaagaggctgctccattttaatcagctcctagaactggaaagactgtt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr3	38601087	38601088	2000546	0	+	AC211854	NA	NA	LINE	L1	L1HS	ccttccctcttcagcattgcctgtttatcaggtcagctccaaaatctcttccagaaagatttccttgattttcctagctgaatgggaacagtaccatggt<br>ctcctccttaatggttctgatcactctgactagtctgagagttatttcaggcctgtttgaactctctacctccccaataatctcttaagctggtgaatga<br>tgtcagggctggcgctagacctcatttgcctctgtattcccaacagcatgtggcacaatgttttccatgcaataagggcttagaaaatgtttaagataaa<br>ttgaaaaaacatgtgataattcattgatagtgtatgacagtaaaataatgggtagatgaacagataagtaaatgaatg<font color="green"><u>AAAACAGAATGAGTAAATAATG<br></u></font><font color="red">GGAGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCACTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATACTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATACACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGTAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACGTATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAGAATTGTAAAAAAAAAAATTATAAATAAAACAAAGAAGAATATGAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>ACAGAATGAGTAAATAATG</u></font>aataaataggtaagtaagtgggtaaatgaatgaatgagcaaaatgcagtgaagaggccaggcacagtggctcacacctgta<br>atcccggcactttgggaggccgaggtggcggatcacctgagctcaggagtttgagaccagaccggccaacatggtgaaaccccgtctctactaaaaatac<br>aaaaaattagtcaggcgtggtacatgcctgtgatcccagctactagggaggctgaggcagaagaatcacttgaacctgtgaggcagaggttgcagtgagt<br>cgaaatggcgccattgcactctagcctgggcgacaagagtgaaactcagtctcaaaaaaaaaaaaaatgcggtgagtgagtgaatggatggatgggt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:SCN5A:NM:001099405:16/27	
0	chr3	55763620	55763621	2000547	0	+	AC216710	NA	NA	LINE	L1	L1HS	caccgatctctacagataagaaaactattttttttttgagaaaactatttaaaaaaccaggagagaaaatattttattttctgttttctgtacttttatc<br>tacagattcaatacatttctagtgtttaccatggtatcacaattccactgccacaggcttaagcaaatgtaaattggagagggaaaattaatttttcaga<br>taaatgcaaaaagaactgcattataaaaatgacagtgtaactaagacatttctactctagattttggcttccttttctttaatcacctagcaggattctt<br>ttggatatccaaactcaatatttcaacggctcttcagagccaaaaagctttctgcaaaggattaaagaagtagcaaaatgtcattat<font color="green"><u>AAATATGAATTTA<br></u></font><font color="red">AGGAAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAG<br>GTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACC<br>TGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTT<br>TTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAG<br>TCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTG<br>GGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCA<br>GACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTC<br>CCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGA<br>GGGTCCTGTCTGTTAAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAA<br>ACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAG<br>AACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAA<br>AGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCT<br>CGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAG<br>AAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACC<br>TGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATT<br>CAGGAAATACAGAGAACACCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGT<br>TAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTG<br>GGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTT<br>ATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGC<br>CGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATC<br>AAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCA<br>GTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAA<br>AGGCAGGGGTTGCAATCCTAGTCTCTGACAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAAT<br>TCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGAC<br>TCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAG<br>CTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAAT<br>TGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTC<br>AGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAA<br>AGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGC<br>CTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGG<br>CAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCA<br>ACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCC<br>CACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACT<br>CTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTC<br>CAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAAT<br>CCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACAAAAAAAGAGAATTTTAGACCAATATCCTTGATGAAC<br>ATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGC<br>AAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGC<br>CTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCC<br>ACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAG<br>TGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACAT<br>GATTGTTTATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAA<br>TCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAA<br>TCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATG<br>CTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTC<br>ACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCA<br>CACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTGCCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCC<br>CTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGG<br>GAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAAC<br>CTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAAC<br>AAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAG<br>AAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAA<br>AGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAAT<br>GCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATA<br>GGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTG<br>ACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAAT<br>AGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAAT<br>GATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCAC<br>TCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCA<br>TTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGT<br>ACCCTAAAACTTAGAGTATAATAAAAATAAATAAATAAATAAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATATGAATTTA</u></font>atttgcttgagaaaaaaaccct<br>gcgtggctatgacagttatccattcttacataaaaaaaaaaatttaaatctcacaagagtaatagaaaaatatcaatgaactgctatgatcaaataaatg<br>aaagtcctatcaatttatttgtagtttctctttgaactacaaataacagatgctaaatatcttcctttgtccattaaagaagtctgagattcttaggttt<br>ttctatcctaaacagcgcaacatgagccatgacaattcttcactgaaactgaattaatttagcttttagcttaaaaaagctaaagtatctataacccata<br>agctgtactaatatagcaaaataactgtattgtattcttaagtgacagctgcattctttaggtca	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:ERC2:NM:015576:13/17	
0	chr10	124445222	124445223	2000548	0	+	AC214986	NA	NA	LINE	L1	L1HS	tagacagtgagtaagtgcatcatgcatctcaaatggtgaaggtgctggctggactcagggtgagattgttagggaaacagggtgacaccattttaaaatc<br>aactccatctttaaactagcaaggcacattccttgctggtcatgacccatggtcatgaaatgtttctggctgaggaaactcctactacaatgaaatgtcc<br>agatgtcccgatatcacataataatatatgctttttagatgattctagacatgctttgatgtacctacacactaaaataccaaaaataactttctttaaa<br>tcaacaaagtaatacattttgtcacgctgttagcccaccctcacattgtcatagcttagcttttacatagataagacccttgtat<font color="green"><u>AAGAAAAACTTAAAG<br></u></font><font color="red">GGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTGTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCATCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACACAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACTATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGACTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATGTCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGCAACAACCGGTACCAGCCACTG<br>AAAAATCATGCCAAAATGTAAAGACCATCCAGACTAGGAAGAAACTGCGTCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATCCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAAACAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGACAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAACTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCCGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>CCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAAATTTAACAGATCTCTCCACACAAAAAAAAAAAAAAAAAAAAGAAATGAAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGAAAAACTTAAAG</u></font>atgatgcattcctctgcttgctttctgaggacgccccactctgtaactgagtagctttcaataagctatctcttctctgtgcttt<br>ctgcaactcaccttgaatttcttcctacacgagattcaagaccctctcttggtgtctggatcaggaccccctttttcggcaacaagagttctgtcttttg<br>gggaaaaaaaatcctcatttcttctagacgtctaaaaatgcttcacttcatatttacacctggaactcgagtctgacccataagatacttaggagggtga<br>gggcccacgtctctgtgcagcttagggtctggttgtcccccaactcctattgcccactgattaatgggcactccagtttttcactgaatagctcagcatc<br>	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr8	123713066	123713067	2000549	0	+	AC204967	NA	NA	LINE	L1	L1HS	agtgcactggcacggtctcggctcactgcaaccttggcctctcaggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggtgtcca<br>ccaccacacttggctaattttttgtatttttagtagagatggggtttcactgttggccaggtttatctcaatctcctgacctcaagtgatccacctgtct<br>cagcctcccaaaatgctgggattacaagcgtgagccactgcacctggctggagttaagccaagatgcatcatgaggtccaactgagattcatttgtactc<br>ctgaaaaagtataaggaaaataataggtgaatagaatattaagtgtaatgtctctttcagtaagaatagtctaggttgtgctgcagtaacaaac<font color="green"><u>AATCCC<br></u></font><font color="red">CGATTGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACCGGTGATTTCTCCATTTCCATCTGAG<br>GTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACC<br>TGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTT<br>TTCAGACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAG<br>TCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTG<br>GGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCA<br>GACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTC<br>CCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCCAGCAGGGGCACACTGACACCTCACACTGCAGGGTATTCCAACAGACCTGCAGCTG<br>AGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAA<br>ACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGG<br>AACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAA<br>AGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAACTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCT<br>CGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCGATGGAAGATGAAATGAATGAAATGAAGCGAG<br>AAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACC<br>TGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATT<br>CAGGAAATACAGAGAACGCCACAAAGATTCTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATAT<br>TAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCAGCAGAAACCCTACAAGCCAGAAGAGAGTG<br>GGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAACTTCATAAGTGAAGGAGAAATAAAATACTTT<br>ATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGTGCTAAACATGGAAAGGAACAACCGGTACCAGC<br>CGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATC<br>AAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCA<br>GTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAA<br>AGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAAT<br>TCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGAC<br>TCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAG<br>CTCTGCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAAT<br>TGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTC<br>AGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAA<br>AGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGC<br>CTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGG<br>CAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCA<br>ACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCC<br>CACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACT<br>CTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTC<br>CAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAGAGAGGGAAT<br>CCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAAC<br>ATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGC<br>AAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGC<br>CTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCATTAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCC<br>ACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAG<br>TGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACAT<br>GATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAA<br>TCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAA<br>TCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATG<br>CTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGCCTTTCTTC<br>ACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCA<br>CACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCC<br>CTCAGAAATAATGCCGCATATCCACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGG<br>GAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGAC<br>CTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAAC<br>AAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACCGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAG<br>AAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAA<br>AGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAAT<br>GCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATA<br>GGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTG<br>ACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAAT<br>AGCAAAGACTTGGAACCAACCCAAATGTCCACCAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAAT<br>GATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCACATATTCTCAC<br>TCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGTGGGGAGGGATAGCA<br>TTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGT<br>ACCCTAAAACTTAAAGTATAATAATAATAATAATTAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATCCC</u></font>aaaatctcag<br>tggcttttaacaacaaatgtttatttcttgctcacactacattttcattctgagttgggagggtgcttggctcctgtgcatcctcacctagtgtgtcagc<br>cagggaaacagaactcatggggtatatacatggaaagagatttattttaaggaattggttcacatggttgtgaagctgagaagtctcaaatctgtaggac<br>acaccagcaggctggaaattcatgcagggattctatcttgcagtcttgataagaatttttttctctttgggaaactttggtctttgttcttaaagccttc<br>aactgattagatgaggcctatccacgttatggagtatcgcctgctcaaattttactgatttaaatgttaatcttatctaaaagt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr1	31776939	31776940	2000550	0	-	AC226130	NA	NA	LINE	L1	L1HS	tccatgaaaaataaaaaagattagctaggagtggtgtcacatgcctgtagtcccagctactagagaggctgaggtgggaggatctcttgagcccaggagg<br>tcaaggctgcagtgagctgtgattgtgccactgcactccagcctgggtgacagaaggagaccctgtctcaaaaaaaagaaaaaaaaatccattgattata<br>catccatataattttttctttttacacagtagttcctgcatggagcttggtgtctggcatacaagtctcttcataaacatttgttaaatcagaggttagg<br>tgaacgacagcattactgtcttcctgaacttgggcaagtgatttaacccgtcagtgcttcactttccttttctataatgacttctt<font color="green"><u>AAAAAAATGAAATA<br></u></font><font color="red">GAAGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAACCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATTATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACCCAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTCAAAATACAAGGAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAAAATGAAATA</u></font>atttccatctgtctcagctaatacttttgtaaaataccgtgaaatcaggcaggggagtggggcagagtggccttgc<br>aatggtcggggtagggctgctgagctgagggctagctgggtgaggcagctgagtgtgaggtaagaaagaaggagcgatcctccaaggtttatataaaatt<br>ggtcataggataacaacttctgagatcccagcaggagtcctaacatctagcagcttgaccaccaggacaccggcctcctaaaactaatcccaacaagcac<br>ctgtaaagtcttcacaggtgaagcctaccttttcagatagtccaacagctaaatcaccagttcccaaggccatttgcatcacccatggaaaacaccggat<br>ccttatacac	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	156236096	156236097	2000551	0	+	AC217417	NA	NA	LINE	L1	L1HS	atatcttattgtgtttttagtttgtatttctctgatggttagcaatggtgagcatttttttcatgtacttattggccatttttatgtcttattttaagaa<br>tggtggcacatacctgtaatcccagccctttgggaggccaaaggcgggtagatcacctgaggtcaggagttcgagaccagcctgactaacatggtgaaac<br>tccatctctacgaaacacagaaaattagccaggagtggtggcgggtgcctggaatcccagctacttcggaggctgaggcaggagaatcacttgaagccag<br>gaggcagaggtttcagtaagccgatatcacaccactgcactccagcctgggcaacaggagtgaaactctgtcaaaaaaaaaaaaagaaag<font color="green"><u>AAAGAAAGAA<br></u></font><font color="red">AGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACCCAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAAATAAATAAAAAGA</font><font color="green"><u>AAAGAAAGAA</u></font>agaaagaaagaaagaaagaagaa<br>agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagagaaaagcaaaatgtctattccggtctattgcctattttttgaatt<br>tggattttggttttcttgctattgagttgtttgagttccttatatattttgagtaataactccttatcagatgtatgctttgcaaataaattttcccatt<br>ccatgcatcatgtcttcgttttggtaattatttcctttgctgtgcagaagctttgtagtttgatgttatcctgtttgtttttgcttttgttgtctgtgct<br>tttggggttatatctcaaaaaatcactgcccagaccattgtcatgaagattttcccctatgctttat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	43741081	43747143	2000552	0	-	AC216092	NA	NA	LINE	L1	L1HS	gaaaaatgagatactagaaaaattagtgcaaaacacatctgataaaagacttgtatccagaatatataaggaatttttacaattcaagaatacaaataac<br>cccatttttaaaaatgctaaaaggatttagacagatactttaccaaaaaataaatatggatagcaagttaaatacgtaaaaagatggtcaacatcattag<br>tcattagagacatgcaaattagaactaaaatgaaatacaactacatacctattaatatggctaaaattacaaagattgaatatgccaaatggtggtaaaa<br>ctgcagagcaagtagaacactcaagcattactggtaggaatgcaaaatggtacagtctccttagaaacagttcggcagtttctt<font color="green"><u>AAGTTAAACATATGTT<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCAGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGGGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTTACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGATGCACCTGGAAAATCGGGTCACTCCCACCCGAATACTGCGCTTTT<br>CAGACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTTGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAGCAAGGCTGGGGGAGGGGAGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCGTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCGGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCCACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAATGGAAC<br>AAAGCTGGATGGAGAATGACTTTGACGAGCTGAGAGAAGAAGGTTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTGAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGCGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCAGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTACA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCTAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATGTAAATGGACTAAATTCTCCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTGAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCATCTC<br>TGCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATATGTTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACAACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCCA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGTAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGGAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTTGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGAGCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTCTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATACCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGAATTAAAGATTTAAACGTTAGACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCTAAAACACCAAAAGCAATGGCAACAAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCACAGTGAACAGGCAACCTACAGAATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCACCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACAATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTATACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGTCACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTGGGGGGAGGGGGGAGGGGTGGCATTG<br>GGAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATTTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAAAGTATAAAAAAAAAAAAATAAATTCCTTAATTGGCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTTAAACATATGTT</u></font>taccatagacctataaccct<br>actcctaggtgtttacttaagagaaataaagacatatacatccaaacacctgtatgtgaatgtttacagcagctgtattcgtaattgccaaaactggaaa<br>caacccaaatgaccatcaactagtgaatggataaacacatcatggtgcacacgtacaatggaatactactctacaataaacaggaacaaactatagatac<br>agacaacactggtgaactcaaaagcattctaaacgatagaggccattcactaaaaactatacactttatgtcatactatatgatgctctaaaataggcaa<br>aactaaaggtccagaaactatatcagtgattgccagggcttagagtttgagaagaagacagact	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:PLEKHH2:NM:172069:2/30	
0	chr10	5277318	5283345	2000553	0	+	AC216090	NA	NA	LINE	L1	L1HS	ctcgctttgagttcatgggcacctggctgtgtaaagtgtggcacctgccccctcactctcttgttcccactcttgtggtgtgagacacaggctcccccct<br>taccttccgctgtcactgtaagctccctgtggccctccccagaagcagatgccagcaccatgcttcatgtccagactgcagaccatgagccaattgaacc<br>ccttttctttattaattacccagtctcaggtattctttcatcatgatgcaattgccctattaccatcactcccatatcctagtttcaaggaaggctgttg<br>ttttagtcccagcccaagcgaacatgtgaaaatatagcctcacaaagtgaatatggaactcttattcttatatgcctgactt<font color="green"><u>AAAAAAATAGTGTAAAGT<br></u></font><font color="red">TGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACAGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCTGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGTAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCATCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAATGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAGGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAATTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATATTGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGCTCAACAAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGTGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAACTGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAATGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAACTCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACACAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCAAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACACAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACATATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GTCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACATAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATGGTGAAAATGGCCATACTGCCCAAGGTCATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAA</font><font color="green"><u>AAAAAAATAGTGTAAAGT</u></font>ttcctcttcaaagttttccttgtgaaagaataaatcataaatgttagaaatga<br>tagtttcttttaaagactaacttccttcaagcctccttgctttatgctaataactttgttaagccctaggctatacagctgttagacatgctcacaggca<br>agttgtacatcctatgtccttgtaccttaaccaagatatttgtgttggacgtgctcataggcatgccccagctcacagcctatgcccctttcttatttgg<br>gaatattacttttctacctatttaaaaaagcttaaaattagccaatcgggttttaatttagattgtgaggtctggctccagccagcggagacaggacgga<br>cacagcaatagggacctcatgcgtaagga	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr4	18688564	18694648	2000554	0	-	AC220986	NA	NA	LINE	L1	L1HS	ctcagaacgataaataggcatgtatcacataaacagggagttttttgttctaagcatagtgattggcatatggaaagataagagccctttaaccaacata<br>gtttgtggaacaaaagatattctaatacttctataaagaagatcaaagagtagtaggagattagcctaaagatagaatcagattcagctcatttaggacc<br>taacacatgtaaaataagaatttcatccaattgcgtaaaaccctcaaatggatctccactaatatagaatatactcagtaattaaaaggaatggacatgc<br>aacaccaagaatgaagctcataataattatgctgagtaaaataaaccagtgtatctggaaaatataaactaatctacagtaacat<font color="green"><u>AAAGCAAATCAGTGG<br></u></font><font color="red">GAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCG<br>GGTTCATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAA<br>GCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGA<br>CCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAG<br>ATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGA<br>GCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAATAACCTCTGCAGACTTA<br>AGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGAC<br>CCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCC<br>TGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAA<br>AGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGAACAAAG<br>CTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTT<br>GAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAAC<br>TACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAA<br>GTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGT<br>GATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAA<br>TACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATACTTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGC<br>AGCCAGAGAGAAAGGTCAGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACA<br>AGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAATCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCA<br>AAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGG<br>GGTTGCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACGAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGAGCTACAAAGAGACTTAGACTCCCACA<br>CATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCA<br>CCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAAT<br>TGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAA<br>GACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>CAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTG<br>GTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTT<br>TATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGACTTAAATGTTAGACCTAAAAC<br>CATAAAAACCCTAGAGGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAACC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTTTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTGAGAGTATAATAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAATAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGCAAATCAGTG<br>G</u></font>ttgcttggggatggaggtgggagtgacatgggagggcaggagagagagatgacaaaggagtgcaaggaagcttttgagattgatggatatgtttactct<br>cttgattgtgggagggtttcatggacgtatttatgtcagaaattatgaaattatacatgttaaacatgtatcatgtattgtatgccaattataccttaac<br>aaagttgtcaaaaattgaacaaacaagcattatgcattgcttttttctgcctaacagctctgtgagaatgtacatagaacccaaaataatagtttcctat<br>tagagtggtgtaagaactgggtgaatggggcccagggaggaaggagatttttcacttaccccttaattcaattaatcaaatattta	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr7	3857776	3857777	2000555	0	-	AC203619	NA	NA	LINE	L1	L1HS	ccagcaacctctcagtgcaccagcggcattaaatagtgtaaaacatacttcaaacacatttttcctattaagcacacatttttctcttatttgtcaaaat<br>ctgtcaggggtatgagaatataccattttatttatagatcatattctttaataataacactttaaatcttatttttcttcctctagggatgtctgaagct<br>atttagccgcttagcttcaatgtccaattcttttccaaaggccgtttcttctgggttcaacctcatttctacctatgaggaaggttttctggtggactgt<br>gtaaaattactgaaaggtgttcccataaatcacatatatcaagcagcccaatgccagtgaatcttacttagtaagtctcctctt<font color="green"><u>AAAAATACACATCCTC<br></u></font><font color="red">GGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAAACCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCGATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGACAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTGAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATACACATCCTC</u></font>ataacactggcatgattggcaagctttttcatccaagatattact<br>gatctcaattattattcccttgagactggtattttcaaaatatagctaaggaaaagggaaaacttggacaaagcaagaacataaacacgcaatgcaaaga<br>agcatattacgcttctatctttatgaaaatataagtataaattagttttaactgagattttaaatatgctaaatacttatattattaacataaaaaggaa<br>attaaatattagtttctaagaaatatgaaaatagaataattccttcattaaaatgttaataacgccaaataattcaattaaaaaagactatatcatgtct<br>tcaagaaagacattgtctctaaaagcttattatttgggg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:SDK1:NM:152744:5/45	
0	chr3	187854836	187854837	2000556	0	+	AC216903	NA	NA	LINE	L1	L1HS	aaaagacttcagtgaagggacctttagtgaaggcttgttgcccaggctaagggaaggccaagggatgctgaggcacctggacagcctttgccacccgagg<br>ctgagcaggagcaggagtggctagcttccccgctctgttggaactatcctgtggagaagccgccctgcagaagccgccctggtggagggatgcagcccct<br>gcagaacccggtgctggaacgagaaggagcagggaataagcaccctcccctctccctcccttcctgtttccttccaatctcctcctcccaatggctcttt<br>gaactcaatggtaaactagccagcagggagagcctgggttattcaattccctggagccagcctgggagacaagaccaggcag<font color="green"><u>AGAAAATCAAAGGATGGG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGTGCAAGGGGTCAGGGAGTTCCCTTTCGGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCATGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCGATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGACAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATGCATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGAAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATCTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTAATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACGCCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAATCAAAGGATGGG</u></font>cctgaggcaaacagagagaaaccattaggagccttagctggggtttc<br>ccaaggggtgttctataaggcccttctctactggtaaaaggatggggaaggtcctcagactttgtttctccttctatctaccacctcctttgtctttcca<br>tggcttaattcgtgaaaaactagattgttcccatgcttgccacttccccaccacctcttcattccttaggtcacagtaatgtgaatctatctcttttccc<br>ataacccactgacttggtgttccctaacaatcttttattttaaattaaaaaaaaaatttctgttcacttttacttacactttcaagcatctggcaatgct<br>gactttgcttgctcttcagattttttcaaggagat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chrX	94739209	94739210	2000557	0	-	AC216964	NA	NA	LINE	L1	L1HS	ctataaccttcttgtacttggatgttgatatctttctttaggtttgggaagttctttgttattgtccctgtgaataaactttcttccccatctctttctg<br>ttcctaaattttaaggccaataactcttagatttgcccttttgaagctattttctggaagctattttccagatcctgaaggtgtgctgcattgttttaaa<br>attatttttttcttttgtctcttctgtgtattttcaaatagcgtgtcttcaagctcactaattctttcttctgcttgatccattctgctattaaaggact<br>ctggtgcatttattagtacgtcaattgcatttttcagccccagaaattttattgattccttttaattatttcaatctcttttttt<font color="green"><u>AAAAAAAATTATCTG<br></u></font><font color="red">GGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCGCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACATGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTGAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCGAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCCTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGTATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAATTATCTG</u></font>ttagaattctgaattccttctctgtattctcctaatttttttttttg<br>tttgtttgtttccttaacacagctattttgaattccctgtctgaaaggttacatatctgtctccaggattggtccctggtgccttatttagttcattttg<br>taaggtaatgttttgctgtatggtattgatgctagtaaatgttttttctgtgtctagacattgaagagctagatgtttattgtagtatttactgtctagg<br>cttgtttttacctgcccttcttgggaaggctttccaagtatttgaaaggactgggcgttgtgttctacgctgtatctgctttaggaggtaccccaatgga<br>gtaacactgtagttcttgcagacttctggaagtactgc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr20	9425937	9425938	2000558	0	-	AC209235	NA	NA	LINE	L1	L1HS	attaaacatgaagctggccaggtcacaggacagtcagaatacagaaaaaaaaagtgggaggatctggaagattatatgctctacactcactcagttgact<br>gtatcattcagttttgtttctttaaacaaaatgcatatgttcatgatctcaaatgtttgccaaatgcctactcaacatctatactgggttatataaagcc<br>gtttataactaaacatgtctacaatgggtttttttctttttagagacagggtcttgctctgacactcaggctggagtgcagacacatggtcatagctcat<br>tgtaaccttgagctactgggcttaggcaatcctcacaaatatctgggtctacagacacacaccaccacaaccagttaaatgcaacctt<font color="green"><u>AAAAATAATTTA<br></u></font><font color="red">TAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCTCTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGTC<br>CCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACAGCAGGGTATTCCAACAGACCTGCAGCTGA<br>GGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAA<br>CCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGA<br>ACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAA<br>GAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTC<br>GAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGA<br>AGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAGAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCT<br>GAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTC<br>AGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTT<br>AAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGG<br>GGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTA<br>TAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCC<br>GCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCA<br>AATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAG<br>TGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAA<br>GGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATT<br>CAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACT<br>CCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGC<br>TCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATT<br>GACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCA<br>GGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAA<br>GATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACATATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTATATCTAGAAAACCCCATCGTCTCAGCTCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCACTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTACTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACGTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATAATTTA</u></font>tagacagggtctcactgtgttacccagactggtctcgaaactcctaggctcaa<br>gagatcctccttcctcagcctcccagagcactgggattacaggtgtgagctgctgtgcccagccttaatggttaattttatctgtcagcttgggtaggtt<br>atggtgctcagaggtttggtcaaacactaggttcgatattgctgtgaaggtatgagatatgattaacatttaaatcagtagcctttgaataaagtagatt<br>accctccgtagtatgggttggccttatccaatcaattgaaaactgtaagagaaaagattgaggtcctctgagaaagtggggaatcttctccaggctgcct<br>tcagactcaagctgtaaagtcaactcttccctggg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr1	95574446	95574447	2000559	0	-	AC225726	NA	NA	LINE	L1	L1HS	aaagatgtcttcaaaggcaaggaatacaagtggcatatgtttcatgaaagggaaagaaagagaaaggggatgagaatgaaaatggcagagagaaagaaaa<br>tactaatgaaaaaagattcatttcctctcatctagatattctccccagctacaacataacttattggtatgacagcagctaaggatgggtaaaatcatac<br>ttttatcatttcatttttttctgccatagccctttaaatgtttccattacttcacttaaaattattgcatataataacttcaaaaagaaaccagttcaca<br>ttaacaagaaagatctataagtgaaattttggaaaagattccaaacctcctcctatcccccctcaaaaagttctactcttttatt<font color="green"><u>AAGAGTAGAGTTGTG<br></u></font><font color="red">AGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAAACCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCGATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>GAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTAGAGTTGTG</u></font>tactattaatgataataatagtatcagtttatactattaatgataa<br>taatagcagttagcatttattcttattatgtatcaaaacgtctgctaattcttaacacaaacttatgaagcaggtgttactagatgagaaatctgagact<br>accaccccatgttttcttctagtactttcataacttccttttttagcttaattcattgaaccctttggaatgtactccaaataattgttgagaagaaaat<br>ctaactatgtttttcaaatatctacacaggtggtccaaaactaattccaaaactaatttttgaatactccacttgtaccacgtactaaaagcccatatgt<br>atttagagctatttctgtgtatacctgattgtttctaga	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr15	33441437	33441438	2000560	0	-	AC209305	NA	NA	LINE	L1	L1HS	ctgagggccacagagaacagaaaagaaagctgcaaagagagctcagtggcttgtaatggttccagagaacctgtagcactgcagacagacactctacaga<br>gtaagagatcacaagcttctgaaaaggaaactggaaaacttctctccttgtgaaattacatgcacaaacccaggaaagaggcatccccagaaaagcttta<br>agaggacccaaaatttctaactgggttgactggtgaaggtcttcccctctgtgaagccactttataaagattggaagagacatttgctttttcaaatgca<br>aaaaatgtaacaaataagacacataaagaaacagggaaacatgacccaatcggaggcccaaaatagatcttcagaaactggctctg<font color="green"><u>AAAAAATGAAAATC<br></u></font><font color="red">GGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAACGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTGGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTGCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGCAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAC<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACAATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTTAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTTTAAATTTAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATGAAAATC<br></u></font>tattaatatgaattacttgacaaagaattcaaagtaatcattacaaagctcaatgtgctgtaagaaaacattaaaataaacaactaaatgaaatcaggaa<br>aatgatgcataaacaaaatgagaaaaccaacaaaggaatagaaagtatgaaaaggaaatagaaaatctggaaccaaagaatataataactgaaccaaaaa<br>attcactggagaggttcaacagcagattttatcaagcagaagaaggaatcaggaaacttgaagtcaggtcatttgaattttttgagtcagagtataaaaa<br>agggagaaaaaaagaaagaagagtgaagaaagcctaaagaacttatgggacatgatcaagcagaccaatctatacagtatgagagt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr14	51737518	51737519	2000561	0	-	AC203592	NA	NA	LINE	L1	L1HS	gtgctgggattataggcatgagccactgcacctggcctgatcttttcaggtataacatatttgtgcatacataaaaggggaaaatataaactatctaaac<br>tggttaaatcactaagattttcctaaaccttcacatttagagtccaactctttgggatcacttttcacttaccagttgttgatatgtcatattttaccac<br>acaacattatccaagatcaagagaactggtaatgcactgcatcttaaaagaatgcttactgctttccccagaatttctttcaagacacttacacccttat<br>acttacgcaagttttgaagtgcgtaagtgggtaattatagctatatgatgatagccacaatcagaaattttaaaatatcatgcaattttc<font color="green"><u>AGAGATTGAG<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGCTTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGTGCACTGTGCGCGAGCCTAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCAAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAGTCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACACCTGACCCCCAAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAATCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCCAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAAACGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCCAGACTAGGAAGAAACTGCATCAACTAATAAGCAGAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAGCAAAGACACCACATACCAGAATCTCTGGGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAGTAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACAGAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAACACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAGTTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACTAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCTGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATTTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACTACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACCATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAGAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAAAAAAAAAAAAAAAAAAAAAGAATGAAGCATGCCTACAAGATCTAGACAATAGCCGCAAAAGGGCAAATCTAAGAGTTATTGG<br>CCTTAAAGAAGAGGTAGAAAAAAAGATAAGGGTAGAAAGTTTATTCAAAAAGATAACACCAGAGAACTTCCCAAACCTAGACAAAGTATCAATATTCAAG<br>TACAAGAAGGTTATAGAACACAAGCAGGTTTAACCCAAAGAGGACTACCTCAAGGCATGTAATTATCAAACTCCCAAAGATCAAGTATAAAGAAAAGATC<br>CTAAAAGCAGCAAGAGAAAAGAAACAAATAACATACAATGGGGCTTCAATACATCTGGCAGCAGACTCTTCAGTGGAAACCTTACAGGCCAGGAGAGAGT<br>GGCATCATATATTTAAAGTACTGAAGGGAAAAGACTTTTACCCTGGAAGAGTATGTCTGGCAAAAACATCCTTCAAGTATGAAGGAGAAATAAGCATTTT<br>CCCAGACAAACAAAAGCTGCGAGATTTCATCAACACCAGACCTGTCCTACAAGAAATACTAATTGGCATTCTTCAACCTGAAAGAAAAGGACATTAATGA<br>GCAATAAGAAATCATCGGAAGATACAAAACTCACTAGGAATAGTAAGTACACAGAAAAGCACAGAATGTCATAACCCTGTAATTGTGGTGTGTAAACTAC<br>TCAAGTAGAAAGACTAAACAATGAGCAAATCAAAAATAATAACTACAACAACCTTTCAAGACATGGACAGTCAATGATACATACAGAGAAATGACAAAAA<br>GTTAAAAATCAGGGGAACAAAGTTAAAGTGTAGGGTTTTGATTGGTTTTCTTTTTGCTTTCAGCCTCAAGAGAGCCTAGGTCGAGAACCCAGTCATGCAA<br>TGCCAGACTTCTAACCTACAGAACTATGAGATAATAAATGGATTTTGTTTTACAGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAGATTGAG</u></font>tct<br>taggattgatgaaaaatatatctgttaggagaaaaataatgttgctaaattcatttgtaaattaaatgactggttccagatttaatttaattttaagtga<br>ccacactttctattgttcaattttaagtcaaaacacacacacacatgcacacacatatatatttatcaaacatctactatttatcctgtgccacagaggt<br>ttagtggagaggttcaggtatagttaaataaagaaggtaagatttgaattggaccctacagaatgaatgaggttacacattttagaggtgggatgtggca<br>ggtagaaaaggaagcaaagaggaacagttgagaaaataaattactgtgatgttaatgactatacagttgcaaatgagataagaacca	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr5	76462212	76462213	2000562	0	+	AC220962	NA	NA	LINE	L1	L1HS	cagagtagctatctgcaaaagttgtgttgaaatatagctgtgattggtgtggggaagttagagaaagcaaatttcagcttattataaggttagattagaa<br>acatccaatagttaaactagagtgactcataaagacgttagttctccttcctgggagtcagataaatgccaggtaacatctctcaggaatatacttcggg<br>gcggggaggggagttcctcataatagaaaacccatctagaacacttactttcttccaagtactcttctaagcacctttcccttattatttatttaaccct<br>catgacaaccttatgaaataggcacttcagatccacagcttttatctgaaaaccttaggaccaaaattcttaattttttggatttt<font color="green"><u>AGAAAGGTATATGA<br></u></font><font color="red">AGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCATGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACACAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CCAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAATTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTGGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAAGAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGACAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTCACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTGTTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGGTATATGA</u></font>cacatacaccttatggtagaaaa<br>cacccccatggggctgttctccataatcaaatacattgatatttatacagtgaggcatgtgaatttttgcattaaatggaatacttttacatgagttggg<br>ttacgttttgttgccaaatgagttcagatcatctcttcccaccaaaaaattttgaaataattttaggtttttgcattctgaattgtagaaaagagattat<br>ggacacatattgctattgccagtttactcatgaagaaactgaggcagagagattaagtagcttgctcaaagtcatatgacttccacccaggcagaaatca<br>ggtttgagccctgctcttaagcactgtgtggactgcctctccctgtgctcttctgcctcctct	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:LOC728723:NR:024398:3/4	
0	chrX	33335592	33335593	2000563	0	+	AC207709;AC231270	NA;NA	NA;NA	LINE	L1	L1HS	gtggggtcagtagtactatctcctttgtcatttctaattgtttttatttggatagtctctcttttcttctttagtagtctagctagaattctattttatt<br>agtttttcaaaaaaagaccccacaactcctgaattcattaattctttgaattttatgtctcaatcttcttcatttcagctctttttgattatcgtttgtc<br>ttctgctaacatggggttggtttgttcttggttctctagttcttttagttgtaatattaggctgttaaattaagatctttctaactttttcatgtgggca<br>tttagtgctataaatttccctgttaacactgccttagctgtttcccagagattctggtatgttgtatctttgttcacattagtttc<font color="green"><u>AAAGAATTTCTTGA<br></u></font><font color="red">AGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGACAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTCACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTACCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAATGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGCACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCGGTTAGAATGGCAATCATTAAGAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACAAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAACACATAAAAAAAAAAAAAAACAACAAAACAAAGCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AGAATTTCTTGA</u></font>tttctgccttaatttcactatttacctaaaagccatttaggagtacattattcaatttccatgtcattgtattgctttgagtgaattt<br>cttagtcttaatttgtaatttgattgtgctgtggtccaagagattgtttttcatgatttcagttcttttgcatttgctgaggagtgtcttactttcaatt<br>atgtggttgattttagaatatgtgccatgtggcagtgagaagaatatatattctattacttttgggtggagagttctgcaggtgtctatcaggtcctttt<br>gattcagtgctaacatttggtattaaatatctttgtaaatgttctgccttgatgatctgtctaatacatttggtggtatgaagtctgtcactattatt	OTHER;OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr5	35850899	35850900	2000564	0	-	AC215801	NA	NA	LINE	L1	L1HS	gatgactattagccatccatgtggaaaatgcggggccattaagacagagaagtttggattttggacgaaggtgggaatagaaatttcagtgttgggagcc<br>tctgtaatacccatgaagtcatggaaatcgatgaatcatccagagcttgactgcagatggagaaggctgattcctggggccctcctaactcagaggttga<br>gcagaagaggaggattcagccaatgaggagacccacaggggttatcatagaagcagcccagccaccaagaatacatcaccattcttgaaacagtttattg<br>ataagtgtcattgaatttgagtcaccaacttatcaagcgaaaagatgaaattgtacatctatctatgaaggaaatatattctatt<font color="green"><u>AAGAAATAATTATGA<br></u></font><font color="red">GAGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCATGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGAGGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATAATTATGA</u></font>atagatg<br>atgggaacaaagctttactagcagttcaataatgcagccttcttcttggctattgaaataaacctggaaattttactgcatatggagaaagaactgtaag<br>atgtacctagaagcactgtgctgatgtggagttttggggaaattttcactatatctgcctaatgtagatacctttcatagggagttttcatgacttattt<br>ttgaacatcttgttttggggccttccattttcagaatcacttcaaaatgcattcctgcttactttggatttttactttggatttttttctctctttatta<br>tgaaatattctccaagttaaggaaggttccattttcaatgccgataatgaactggtagggttcatttctatacttaaa	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	downstream:SPEF2:NM:024867	
0	chr7	53620011	53620012	2000565	0	-	AC214812	NA	NA	LINE	L1	L1HS	cagcctgcagggacagtgagagctcagagggcagaagcagatgcctgttttggagggtcgtagaaatattgcagacaatcatcttttcagctgataacta<br>gagtcatctgaaggaaaacacactaatgaaattgtcactgttaagtacctgagcctccattggggccacactcatcaggggagagtgaagctttgctctg<br>acatctaactccacacccactgcccactgtcgtcacgtggcttctctgcccaatccccttctccactcatcctcacatctttttgctaggtaattttttg<br>gctcagatagagaggacttaaaatcctgacttcaggcctatgagtggatatgataagaaaagggcaggtaacaaatatcattttt<font color="green"><u>TAAAAAAACAAATAA<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGGGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAGTAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCACCTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAAGAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAATAAAAAAAT</font><font color="green"><u>TAAAAAAACAAATAA</u></font>cacagaaggaaaactcaggaaagaaaaggtgctggg<br>caattccattcccagggtgagaaatgatgcatctcagaatcaaaggctcagagaaacagaaattttacaaactcaggcaggaggagaggaaaatgggccc<br>agcagagctgagaaacaaagcagaagagaaaaataactccagtacagaaatgaaagggacattggacaaaatgaaatggaaaatagatgttgatgcaaat<br>aaagtcaggaacatgaaagatgaccttgttagactcaggtgtaaggggtagaaaagagaagcaaatggtcaaggagtagaataaacatgagagagacgaa<br>aggtggacaccttggcatttgctttcctacggacagggcaacaaaagag	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr4	82425601	82425602	2000566	0	-	AC203651	NA	NA	LINE	L1	L1HS	attaagctataaccactgcatccccaaatgggtttgctggtcatctccatagtgaaggccagtgagattctttcccttttattgctttcatgtctagcaa<br>tacctatgcctgtcccaaccacgcccacgagaagcctacctctggcaatgatgctcagtcaacaaactcaaagggatgtatgtcttccatggaaccctgt<br>gacacttcaaatgcttacctgtctatattagattagtactattttagaagattagacttagaagtaatttttagtatattaggattattaatagtatatt<br>attttcatagtatattagattataaattcagcaatatttgaatacttactatttgccagacacttttttagtcctatgaacaataccatt<font color="green"><u>AACAAAACAG<br></u></font><font color="red">GGGATTGAGCCAAGATGGCCGAATAGGAACAGCTCTGGTCTACAGCTCCCAGCGTGAGCAACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCAGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACCCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCGGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCTGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTTTTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCATTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAAAAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>TGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGTAGTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACAAAACAG</u></font>acacaaatctttgtgattgta<br>gaaggttatattctactgggggaaaacaaaataaaccataaccataataaataagtaagttaactaggtgctaagtgctatgagcagaaaaaggagaaca<br>ggacaagtaaatcagtagtgctggagggggtggttataggaggtaggtgacagtttaaaataaggtaattgaccaggcatggtggctcacgcctgtaatc<br>ccagcacttttgggaggctgaggcgggtggatcacgaagtcaggagatcgagaccatcctggctaacatggtgaaaccctgtttctactaaaaatacaaa<br>aaatgagccaggtatggtggcacgcagctgtagtcccagctactcgggaggcctaggcatgagaatcac	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr3	20723909	20723910	2000567	0	-	AC203662	NA	NA	LINE	L1	L1HS	tgtttgcattttgaaacacaccataagggaaaagaaaagttatgaactgtgagaaaacatttttagcaaacatatctaataaaaagccaactctcacaac<br>aaataataacaacagcaacaaaaataaatgaataaaaaatggacattttagcaaagaagagatgtaaaagcaaataatcacataagatgttccacattat<br>tatgagaatgcaaatctaaactacgatgaattaccaccatatacctattaaaatggctacaaaacaacgaaaacgaaaaactgacaataataagtgctaa<br>tgaggatgtggacaaagtagtttttattcattgcttgtgggaaggcaaaatgatatagtcactttaggaaaccaacaatttcttttaaagt<font color="green"><u>TAAAGACAC<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCTGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCTGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCGAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCACTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAAGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTAGGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATACTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGATAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATGCTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCATGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACTAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGTAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAGAATTGTAAAAAAAAAAAAATTATAAATAAAACAAAGAAAAAAAAAAAAAAT</font><font color="green"><u>TAAAGAC<br>AC</u></font>atttaccttattacccagcactcccactcctatgtattatcgtatggcttcacaaatgtctgtacataaaagtttatagcagcttttttcattatcac<br>taaaaagtaaaactcaaacacctatcaattaatgaatgggtaaatatgaatagctttacacctatgcaatggaataaaactgtgcaataaaagcaaagaa<br>ctacagaaaacatgcagcaaattgatctcaaaaggattttgctaaatgaaaaaggaaagacacaaaagactgcacactttatgactctatttatatggca<br>ttttcaaaagcaaaattctagggtcagatatcagattggtagtttcctgggttgggattgaatatggggactgattacagaagtgaaggaaac	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr1	213782668	213782669	2000568	0	-	AC214846	NA	NA	LINE	L1	L1HS	tattataatcatccatttgaggcctgtgcaaaagaacttgtgagctggttatttctggagctcctagtaactgtaaattatcacatttgcctacactcag<br>cctttaagagtttttaaacatttcaattgctttctttttccttgctttaaggtgtctcttagaacaaccaccttatcctttcctgctctaccataagtga<br>aactgtatatgggtcaccttctctcttcatagggcttttcatgccttcaactttagcttacctagttgctttgtggactcagctctatgatggactctat<br>agaaaaatattactcagctttttctcattgttagagtgggagcaacattatcttgtggttctttacatcctatgtggaaatggaact<font color="green"><u>TAAATGTTATTTA<br></u></font><font color="red">GGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATACTTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCAGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAATCACTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACGAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGAGCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGACTTAAATGTTAGACCTAA<br>AACCATAAAAACCCTAGAGGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>ACCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTTTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTGAGAGTATAATAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAGAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAT</font><font color="green"><u>TAAATGTTATTTA</u></font>aat<br>tataatatcaaattttatattctacattccttaggcatccttctattcttgatttctgtattcattaaataccatttggagaggacaagtcagtgttggt<br>tcataattagcaatgtagacaagcttgggtaatctgggaatactctaggttagaaacaaatgagaaaatttacttttataattcagaagttgtcaatatt<br>taacaggattcgctggccagagagaagatgagacatctttttccctaacagtgatcaaattcatcagttatttttaaaggacaatgaataaaagatgtag<br>aattctaagagatgggcattagtcagaaagctcaacaaagtctctttatgttttatttaatataatattaggaataaccttata	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr6	63426167	63426168	2000569	0	+	AC216098	NA	NA	LINE	L1	L1HS	aaagtttaggggtcagcaaactggcctatgcttcaaatacagcctgttgcttgttttggaagttaacacttcatggaaacacagttccacctattggttt<br>acatgtgcctaaggttgtttcattacaacatagttgagtaattgtacctgagaccacatggctcacaaagcctaaatattcactatttgatcctttacaa<br>gaacagtttgctgatctgtgctttagacttttaatttgaaatttgaaatccatgtcgtgttctcagatatttactacactttctgtttctatcaatttgg<br>aaatatttaatatggttggagtaataattacatatttaacaaatacatcaaaattatttgatagaagcctaagtcctaaatcttgctc<font color="green"><u>TAAAGAGAAACA<br></u></font><font color="red">AGGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAACGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCTATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCAACACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGACTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGAGATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCGAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCACATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAATAAAAAAAAAA</font><font color="green"><u>TAAAGAGAAACA</u></font>aatgacaaatgtaagttgtcaccacttatcacaaaattaggatct<br>ttttctataaattctattgtaaaaattgcagtttcatataaatgaattatgtattgttattatggttcaacctaagaatttttctagcctaaaagtatgc<br>atattacgaccaaaacatagttagtaaatgccataaaataacatataactctaatgaaatcaaaatataaaatatcattagctttgttaaaagagtataa<br>aataaactgttaacatggacaaattatattaacttagttacttaattattagaaataatatgagaaatagcattagttacttgagaaatagtgggccatc<br>tattatgtttattacaaaagatgcagctttccaatcattttgc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr12	116298844	116298845	2000570	0	-	AC193146	NA	NA	LINE	L1	L1HS	tctttctagtggagctctacttagagcttcccattgcgtgtactttcagagactttttgtctgaagctggtgcttattctattgcttctattctattgct<br>acatccagaccttctattctattgctacctccagaacttctatcctattgctacctcccaggagcgtggaagactcaccacagcttcccatctcctctag<br>atcctaagtaggcatggatcatggcagagacctcccccgtatcagtcaggaccctggcaggaaagggctatgcactcaaaccatgtaattgaggacagat<br>gaatgaagggctagtttacaaaggtgtggtcaggggcaagggaaaccaacaaggaatattcaagacccaggaccatggggcacctc<font color="green"><u>AAAGAATGAGAGGG<br></u></font><font color="red">GGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAACGGGTCAGGGAGTTCCCTTTCCCAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGCAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAC<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCAACCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTAATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACATTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAGCTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAATAAATAAATAAAAAAAAAAAATAAATAAATAAAAAAAAAATAAAAAAAAAAAGAAAAGAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAGAATGAGAGGG</u></font>agagagcagctggcagaacttggtaatgagctatgtggcaaagacagcctttaacagagggacagagccactgctctttcta<br>gcccacagcagaaacccaagagggaataaacccaacctcactctcctcccaccccccattatcctaccaatgttttctattgactgaatccaactggaag<br>agaggtctgttgattgggtcagcctccaagggcacctagcatagtgcagaagtgtagcgaattgacctggaggggcaaaccaacaattgcccgtgcccct<br>tccaggctgaaagatgagaggtggccccattcattaggatttatttggtttcaagcaccataaactgacctggcaaaattccagcaaaggaggaaagagt<br>gtat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr3	82073697	82073698	2000571	0	-	AC217244	NA	NA	LINE	L1	L1HS	agaaacaagacaaggatgtccattctcaccacttctattcaacaaagtactggaaaccctaaccagagcaattaggcaagaaaaagaaataaaaagcacc<br>caaatcagaaaaaaggaaataaaattgtctctgtttataggtacatgattgtatatttaggaaaccttaagtattccaccaaaaaaaaactgttaaaaat<br>aattcattaaagttttatcatacaaaaacaacatgcaaatgcagttgtttctgtacattgtcaatgaactgtttgaaaaagtatacgataaaatgtcatt<br>taaaatattataaaaacaataaaatatttaggaacaaatttagcaaatgagatgaaagatctgtattctgaaaactaatgatgatg<font color="green"><u>AAATAAGATGATGA<br></u></font><font color="red">GGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGTTCCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGATGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGGCAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACATGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCTATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAGAAAATACTTTACAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTACCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACTGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CTAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCACCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCTCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATATTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAATAAAAATAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATAAGATGATGA</u></font>aataaattgaagtcacaagtaaatggaaaga<br>tatcccatgtttatggatcaaaagaattaatacaattaaaatgcccatactacccaaagcaatctatagattcaatgcaattcctatcagaatttcaatg<br>gcatttttacagaaatagaaaaaacaattctaagatttgggtgaaaccacaaaagaccctgaatagccaaagcaatcttaagatagaagaaccaatctgg<br>aggcaccatgcttcctagtttcaaactttatttcaaagctatagtaatcaaagcggtatggcactggcataaaaacaaacatatagaccaatgcaacagg<br>atagagagcccagaaataatgccaactaatctccaacaaaggtgccaagaataca	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	191186960	191186961	2000572	0	-	AC216112	NA	NA	LINE	L1	L1HS	ttgtgttttcttcattaatagctattacaacagaagctactctggggtttttaagaaaaagtgtaatttagacacttagaaatgactttgtttggaaaaa<br>aaggtttttttaagtgcactgtaaaagcaccacatggtctagccccataataattctccctttttgcaaacccaggattcagtgttggctctgcccagag<br>ctcaaagatccagttaaaagatagggaaaaggaggtcttatgaatctataaaatgtacttctattggcatgcctaatatgtctatgtatttatgtcttgt<br>gtacaccatgtttcactactgaaaatatataaaagagttctaattaattggctcaaagaaaaataaaagtgcttaaatacttcaac<font color="green"><u>AGAAAAAGGAAAGA<br></u></font><font color="red">GGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATACTTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCAGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAATCACTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACGAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGAGCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCTACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGACTTAAATGTTAGACCTAA<br>AACCATAAAAACCCTAGAGGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>ACCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTTTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTGAGAGTATAATAAAAAAAATAAAATAAAAAATAAAAAAAAAAA</font><font color="green"><u>AGAAAAAGGAAAGA</u></font>ctagtcaaatgctttctcaagtttatatgacttaag<br>taaaatctttaatgaataagctagctttaaaaattattggtgaagtaatggctgggcacggtggctcacgtctgtaatcccagcactttaggaggccgag<br>gcgggcagatcacctgaagtcaggagttcaagagcagcctggccaacttggtgaaatcctgtctctactaaaatattttaaaaattagccgggcatggtg<br>gtgggcacctgtaatcccagctacttgggaggctgagtaggagaattgcttgaacccaggaggcggaggttgcagtgagccaagatcttgccacttgcac<br>tccagcctgggtgacagagtgagactccatctcaaaaaaaaataaattat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr11	9999029	9999030	2000573	0	-	AC210891	NA	NA	LINE	L1	L1HS	aaacttgggtgtccctccctgccccaaataatcttgtaaaatgctcttgacatcttttgtcatgtctgttcacctgtaatttggattttactagaacatg<br>tactagttttagaaaatgtatccaacagttttcacagtatactctttaataggcatttttgaaaactgactaaaatgatcctgggccatcagctatcaac<br>actttgtttccacagttaaaccacattaatcttgtatcatttgtgtttgtacctttttctatgcatgctttctttttacttgtccatggttaactttggc<br>cagttttttattagctattgatgggtcagtatgtctccatcgatgatctctgatattaaatatagggtttttttttaaagttctt<font color="green"><u>AAAAAAGTTTTTGTT<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCCTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAATTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAAGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCCGGAAGCTTGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACAAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCAATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACTCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGGTAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGATTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGAACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATATAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACATATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCATGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTATAAAATGGGAGAAAA<br>TTTTCACAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTGTGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTAAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAATAAAATAAAATAAAATAAAATAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGTTTTTGTT</u></font>cagtttgtcttacaaatattattctt<br>actttgtacataaaagttattaaaatgttgactgtagccattccttgctattcagcaagttgtttcagttttaaaatgctttaatggaaaacctttggta<br>gtctcacttttgtctttccctggaaaaacttctctctgtgatactatgtgattatttttgaagtgataatgttactggcagtgaacccataggagtctgc<br>agcaaaaattgttgcctcctcagaagaaaaaattcagccaaggggcctaaggcagagtgagagaccaaggcaagttttagagcaggagtgaaagtttatt<br>aaaaagctttagagctagaacaaaaggaagtaaagtacacttggaattgggccaagcgg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:SBF2:NM:030962:6/40	
0	chr7	8853241	8853242	2000574	0	+	AC207969	NA	NA	LINE	L1	L1HS	tccttccttccatttaatttgctctggttcttctcattttttaagttagaaatgtaggaaagttcaaatacttcatggtataaatttttgtccacatgag<br>gctatagtttcattatctaaatttttatatattgtgtttttattatcattcagtttgaaaattttttaaatttctcttgtgattttttctttgaaacaaa<br>attttttaaagagtattttaaattttctagacattttggaactctcgatactcaatatttgtttctactttaatcccattgaagtatttttcattatttt<br>tgtatgctttgttattaaatgcatacgtgtttagaatgtaaatgcatacaggtttagaatgtttattctctagatgatttgttcctttt<font color="green"><u>AACAATATGTA<br></u></font><font color="red">AGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGTGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTATAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAACCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGACAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTCACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAATGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTGTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCGGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACAAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAACACATGAAAAAAAAAAAACAAACAAACAAAACAAAGCAAACATGGAAATGTTTGTTATTTT<br>AATTGTTATGATGGTTTCATGGCTGTTTGCATGTGTCAAAACTCATCAAATTTGTGTACGTTAAATATGTGAAACTTATTGTATGCTGGTTACACCTCAA<br>TAAAGCTGTTAAATTTTTTTAAATTTAAAAATATTATTTCAAGAATAAAATAACCAAACCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AACAATATGTA</u></font>atgtttcacttaatattttgtaaccttgtttaccttgaagtctactttgtccaatgttaagatatttcagtttttttatgattactg<br>tttgcatgggataactttttctataatatatttctatctttgtttttatatttaaaatttattttcttataaaatatagcatgtaactttataactttat<br>aattttcttaactttaattttctcaacttttataatttcttaactttaattttcttaacttatactgtaaacttataatataactttataattttcttat<br>aaaagatagcatataactttataataaactgattttctgtggaatctagtagtctacaaaatgaagaggttacttctgattcactaaaaatgaatatttc<br>ag	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	57374574	57374575	2000575	0	+	AC214167	NA	NA	LINE	L1	L1HS	ccttatctttttgcattttacgatcaaatttaatttgcttatgaaaacttcagatactagaaaaaggggaaatacattccaactgatctgaagactttgg<br>tgtagtagttatgccaaatcagtgattacagtaagataaaattgtacatcaatctaagcatatacatagaaaattctaaacaaaatataatactgtattt<br>atattaaaaaatcaagttgaatttatctgagaaattcaacgatgattttacatgagcaaaactaaaactaaaacccatataatcatctacataaatgcac<br>aacaatgatttagtaaatgtcaactttaatttgggacaaaaattcaagaaaatctaggcaaatcatgaagtcttcttaatctgat<font color="green"><u>AAAAATGATACTTAG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACCGGTGATTTCTCCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAACTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATTCTCCTCAAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATATTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCAGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGTGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATTCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCCCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATTATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCATTAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGTACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCCACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACCGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCACATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGTGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAATAATAATAATTAAAAAAGAAAAAAAAAAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGATACTTAG</u></font>aaaatcaactttgagtaa<br>gcattattctaaatagaaaataacacaatattacatttagaaacaggaaccaatcaaggtgctcccaaatctacttttattccatattttacaggatatt<br>ctggccattatattaaggcaaaaattaattcaaggaataactttattaaaagaaaaaataaaattattacctacaatgtgattttaaaataccaaagttt<br>tgaacaagaaattctgttgctgggattcttttccctaggtgcacttgaatatctgcaaataaatatctgatcaaagattatcattttagcattgctcata<br>gtagtgacaaattgagaaaaatatattaataaattctaattagtagagaatttggaaagtaatattg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr7	105755132	105755133	2000576	0	+	AC216000	NA	NA	LINE	L1	L1HS	tgttttttcaaaagtccattaccaaacaatgattcagggctcctaaactgttttaataaagaaaattttctatttgtcatttctcccatactttgtccgt<br>gagtgggtgtgagggcaggctggacttggaaaaacactttaacatggacttgttgactggattccattattttgtgtgcccagaattcacccatttcctt<br>tcctgtgtataccctcctccttctaggaactgtcctttcttcttctccacatgcttaattgggagctgctaggtgagttcaaatgtaggttagaccctgg<br>ccacaatttgttggtgcaggagtgaacgccggatctaaaatggatcaattgttctcttcccagggaatttggactttggtat<font color="green"><u>AAGACTCAAGTCAGTCTC<br></u></font><font color="red">CGATCACTAATTCAAGCCAGGCCACTGAAACACCTACCAATTTTAAGAAATTCAAATTACTCTCATTTTATGATGGATTAAAACTTCAATCACCTTGAAG<br>GACATCACCGAACCAGTTAATTTATATATTTGAGGATAGAGAGTACAAATGGATCATCTCAAAATGAAAAATATGAGAGGAGGAGCCAAGATGGCCGAAT<br>AGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTG<br>CCAGACAGTGGGCGCAGGCCAGTGGGTGCGCGCACCGTGCGTGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTC<br>CCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCAC<br>CACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAAT<br>GAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGG<br>CCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGACACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTT<br>TGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTA<br>ACTGGGAGGCACCCCCCAGCAGGGGCACACTGATACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTA<br>ACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACA<br>GAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGA<br>CGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTA<br>GAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCCAGAACTACGTGAAGAATGCAGAAGCC<br>TCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAA<br>AAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAG<br>TTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGAT<br>ACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGT<br>TACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAA<br>AAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGCTGAGAGATCTTG<br>TCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCACTGCAAAATCATGCCAAAATGTAAAG<br>ACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTA<br>AATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCA<br>CGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGA<br>TAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAAT<br>ATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTA<br>ACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACAT<br>CTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACTTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTC<br>CTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCACT<br>CAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAA<br>AGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAA<br>ATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAAC<br>TGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATGGACCCCTAGCAAGACT<br>AATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCAATCCCACAGAAATACAAACTACCATCAGAGAA<br>TACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTG<br>AATCTCTGAATAGACCAATAACAGGAGCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAACCGAATT<br>CTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTCCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGC<br>ATCATTCTGATAGCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATAC<br>TGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGGGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAAT<br>AAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATG<br>CTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAA<br>AACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTACTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAG<br>GCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTTTATCTAGAAAACCCCATTGTC<br>TCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACA<br>GACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCT<br>CTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTG<br>AAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGT<br>TCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAA<br>GGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCACATATCTACAAC<br>TATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGC<br>TGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAA<br>CCTAGGCAATACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTA<br>ATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAAAAAATTTTCGCAACCTACTCATCTGACA<br>AAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTT<br>CTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCAT<br>CTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGTTGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACT<br>GTCAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATA<br>CCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGT<br>CCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAACGATGAGTTCATGTCCTTTGTAGGGACAT<br>GGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATC<br>ACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGAGAGTGGGGAGGGATAGCATTGGGAGATATACCTAATGGTAGATGAC<br>ACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGCGCACATGTACCCTAAAACTTAGAGTATAATAAAAAA<br>AAAAAAATTTAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTCAAGTCAGTCTC</u></font>tttccagatggctgaacctaccagtaaggtaaaattcaggagctttgggctcctgaa<br>tgctcctaggtttgctgttacaagggtggaagaaatagagacagaaaaaatgatgtaagaagagattgaaggctgctgatggtgttccaggccctggatt<br>tggccgtcactgcccttgccttccatgagacatctcagtcttcggagtcagctagttcagattggttttctgttacttgcaagccagagtgtaccaaaca<br>caggggcatgccagcaacagcagccctgagctctcctgggtgaggttttgaaatttcactcgcaagattccctgcaacattttctcccttctgccagtta<br>gagtttggactcagatcatgtttgt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr3	170752659	170752660	2000577	0	+	AC211778	NA	NA	LINE	L1	L1HS	tataatagctagaaaatggaaacaatacaaatgtcactcaatgaataatgaataaacaaaatgtggtatatccatgcaatggaaaattattcagccataa<br>aaaggaatagagttctgacacatgctgcaatatggatgaatcttgaaagcattaggctttcaagtaaaagagacccaaaatgctacatactgtgtgattg<br>catttatctgaaatgtccagaataggcaaatccactgggagagaaagtagattagggagggataatgagaagtaactgctaacaggtaaaggcttctttt<br>taggagatgaaaatgttctggaatcagacagtggtaatgcttatacaactttgtgaatatactaaaaaccatgaaattgtatacttt<font color="green"><u>AAAAAGGTATTTT<br></u></font><font color="red">TGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCACGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACACACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGTGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACAGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACCGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACAGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCCACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAATGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGTGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACCTGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATATAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCCGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGACAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTGTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAAAGAAATGGATACATTCCTCAACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAACAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACTGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGGTAAAAACTCTCAATAAATTAGGTATTGATGGGACATATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTT<br>ATGGGTAGGAAGAATCAATATCATGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACCAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTTTTGTGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATACAGCCATAAAAAATGAT<br>GAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTGGTGGATGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u>AAAAAGGTATTTT</u></font>atggtatgtcaattatatcacaataaaaagaaatttgagaaacctcttggtgaaga<br>aatcgtagtcaggatttatgtttagttcttcaggtgtgatgaaaactattaatagtctatgcattctttttttgtcaatagatattttgataacatcatc<br>aaaattcttatacctacaaaagccctttggccatttattatataattaatcactttaaaatagcaagagtaataataataatagcaactaacatttattg<br>aatacttactatacattggtcactgttctaaattctttgcatgtattaactcctaaaagagttaaaagaacaactctataaggtgagtactattcttctc<br>tctatttaatataggaggaaactgaggcaca	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:MDS1:NM:004991:1/3	
0	chr12	125368896	125368897	2000578	0	-	AC203650	NA	NA	LINE	L1	L1HS	tatatattcctcagaaccaaatataactccaattctacattaaaatggaatatataataaaatataggtatatatacacatatataagcaaatgtacata<br>tatatgtcttaaaacacatacttgaatatagtcgtcaatatgccttctatacattagacaaatatatgaaatacatgcttaatgaattaactcttgatac<br>attttaagctaaaaaataaagtaactgtgaaatctgttcaaaatgcaaatctatccttccataatcacagaagtgtagagatatttaatattaagttgag<br>tcatttatttcaccggaagttgctaataggtgagtccatggatttttcttgcctggaattttattttgtttactctgggaaattc<font color="green"><u>AAAAGAGTACAAGTC<br></u></font><font color="red">GGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACAGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGTGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACTGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAACGATGGGGATAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATAGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATAATATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTGGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAAACCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAATGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATAGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATACTGGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAAAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGAAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTTTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCTGGGCAGAGACACAACCAAAAAGGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACGCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGTATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGACCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGACAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACCATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGG<br>AACACTTTCACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAGTACAAGTC</u></font>aataattttgttaattggcagctttcacttaaaaattgagaatgttagt<br>ctctttttaaaaaaatagagtaagtggaaacagtaaatcagcaaccccgcatggcagcagctggctggaactgagtaacgatgtcttacacatcagggcc<br>actggcccaagtgtggctccaccactgagctgactgactgtcagctgtggtttatcttcatacttgcttcctgtccgcacctccctcaaggggggacatg<br>aaagggaacatacgggaatacgtttagaagaaaaacatagggtcaacatagcactttataaaagtaaacaatatgtctataactttaccatacaaaaaca<br>aaacaaaacaatccttcccacccacacatgctacct	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr16	27333442	27333443	2000579	0	-	AC215793	NA	NA	LINE	L1	L1HS	atgtttgttcctgcttcaattttagcagaattcatgttgcaatgataggggcttttttgcaaacagacgccttatccttcttagtgcctcaaactagatc<br>ctgttcagacatgttatagcaagttagtacaagtttattttggtgcagaaaaaagtttgaactttatgcatagttttttcataatttgaattttccatga<br>acttttggaagaattcatattaggtagatcctaataataataagtatgcatgttgtaatctctaagataagcacaaaaagaatataaaagaaagtacaat<br>gaacaaactaataggaaaaatggaataataatttttaaaacttgattttctaaaaactagaacaaagaaggaagaatagataggtc<font color="green"><u>AAAAAAGAAAACAA<br></u></font><font color="red">GGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGATGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGGCAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACATGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCTATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAGAAAATACTTTACA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTACCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACTGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCACCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCTCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATATTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGAAAACAA</u></font>atagcaagatggtagacataatcccagacacatcagtgctttcattgatgt<br>ctgaaataaaaggcagtcttaataccaaaacttgacattaaaggaaagtagaattacaggtcaatctttcccataaataatctaaaaaatatctgaaaca<br>aaatattaacaagtcaaatctaataatatttataaaaatagataacatattattatcacattggtttatttcaggaatgtaaggttagtatgacatttag<br>aaaccataatcaatttcaccacattaactcaataaacaagaaaatttatattatcatttaataagttcagaaagcacatttaataaattgcaacacccat<br>tcatgatttttaaaacctgtcaggaaagcagaaat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:IL21R:NM:181078:1/9	
0	chr13	60360346	60360347	2000580	0	-	AC209536	NA	NA	LINE	L1	L1HS	aattaaatgcttattatataaggattcaaggaaagggatacgactttttaaaaatcttcatgtctaaatttaaatacttaaatattaagagaatttgagt<br>ttctttcttagttcatcatttcatgtctaattctcactagtgtttcctagaatgtaaaaattcagcatgttggggaccacaactaaattttccagatacc<br>ccagaaataaatggccagagtgatctttgaaaatcgaaaaatgtggcagcaaccatcatcttctgcatttctcctttctgagatttcatagaaccccaaa<br>gagaacaataaaataagcttaaaacttcctctcactccactttaaatctaatattttatctaatgctggaacagtgtcacacaggttatat<font color="green"><u>AAAAAAGAG<br></u></font><font color="red">GAGAGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGGGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTG<br>AGGTACCGGGTTCATCTCACTAGGGAGCGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCA<br>CCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGC<br>TTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAGTCTCACTGATTGCTAGCACAGC<br>AGTCTGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAAC<br>TGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAGACAAAAAGGCAGCAGTAACCTCTG<br>CAGACTTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTATCCCAGCACGCAGCTGGAGATCTGAGAACAGGCAGACTGCCTCCTCAAGTGGG<br>TCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCT<br>GAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAA<br>AACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACA<br>GAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCA<br>AAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGC<br>GCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGA<br>GAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGTCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTAC<br>CTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGAT<br>TCAGGAAATACAGAGAACGCCACAAAGATACTCCTTGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATG<br>TTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGT<br>GGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTT<br>TATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAA<br>CCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGGAAAATCACCAGCTAACATCATAATGACAGGAT<br>CAAATTCACACATAACAATACTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATC<br>AGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAA<br>AAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAA<br>TTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGA<br>CTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCA<br>GCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAA<br>TTGACCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACACAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACT<br>CAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATA<br>AAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATG<br>CCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAG<br>GCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATC<br>AACAAAATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATC<br>CCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACAC<br>TCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGT<br>CCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAA<br>TCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAA<br>CATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCTCTGGGATG<br>CAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAG<br>CCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACC<br>CACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATA<br>GTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACA<br>TGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATATACAAAA<br>ATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGA<br>ATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCAT<br>GCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTT<br>CACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATC<br>ACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGC<br>CCTCAGAAATAACGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTG<br>GGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAA<br>CCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAA<br>CAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGA<br>GAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAA<br>AAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAA<br>TGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAAT<br>AGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTT<br>GACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA<br>TAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAA<br>TGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCA<br>CTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTGGGGGGAGGGGGGAGGGATAGC<br>ATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATG<br>TACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGAG</u></font>aagaaagctattccaccattgtagagcactctagaactaactt<br>tccaagtagtaaatatccaggtcttagactattaattattgcaaagaaaagaagaaactcattcattaaactttctatggttatcaacttaaatcaacca<br>catgccaaacgtcgtgctaagaactaggcatttctgtgctttctactcaaggaatccaatgtagtaaaagaaacaggtgtgaacaaataatgtgatgtag<br>tgtgatgagtgttatgacattggcctgcaaaggaaaccaagaaattgtgtaagagggacactaaatccagacaggaaacaggaggagacttgtgaactaa<br>gcctttagaaaaagcaagagaaagtcaaggaggaaacactgaccaaat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr15	31819144	31819145	2000581	0	-	AC206103	NA	NA	LINE	L1	L1HS	ggacaaaatacaggaccagctcagagatgattctggactcacttcatggtgttaataggttttgggtcaaagttgccatccgcatccactgagatctgtt<br>tctccaatgtggctgtgattctggtatctaaataatctggtggcaaggccccagctatagcactgagacaaggcagggccattcggaaaagatctgggtc<br>atatttctgtgagggaaaaacaaggccacattagtagagaaagcagaaccatgcctttagacagaaccaatcaccaatcagctgaaaacagaaataaaat<br>acgcgcatttatccaggttaaccaaaacgggaaatgtgtaaccccttaaatattttctggtggaaatgcaggtatccttggaaaat<font color="green"><u>GAAATAACACTATA<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGTGTGAGCAACGCCGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGGGCTTTT<br>CAGACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACACCCACGGAATCTCGCTGATAGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAAGGGCGCCTGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCATAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAATGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCGGCTGAGA<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCCACACCAAAAACCCATCTATACATCACCATCATCAAAGACCAAAAGTAGATAAAACA<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTTGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGGAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAACAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATATGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACGAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTATCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACGCCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAATGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCATCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTAGCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAACAGCTGTCTATGACAAACCCACA<br>GCCAATATCAGACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCGTCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AAATTAGAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTGAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAACGCCGCTTATCTACAACTATCTGACCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAATGTTAGACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTTAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATCGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACCAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTGTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCACTG<br>GGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAAAGTATAATTAAAAAAAAAAAAAAAAAGAAAG</font><font color="green"><u>GAAATAACACTATA</u></font>aatcctcaagtcaccatttgctttaagttgaaaaatcttaaaac<br>aggtttaaatcaatatctcctaaatgactaatttcaagactacctaagggttaaagtgactaggcgctaggccagaagtgactataaacttgtctgctaa<br>ggatggtcacagaaacggacccaacttataactggagagggcacagtaagctgtgccaagctctgcagtagctgatatgggtcatatgttgacatcatca<br>gcaggctgctcaatatccatcattctctcttgaacccagccagaaatgaatttcagtcgaatggcatggggttgggaagagcttttgatctgcttatact<br>agaccaacgaaatccaggggtaaagaaaatttaagtgcaggt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:RYR3:NM:001036:50/104	
0	chr1	116349555	116349556	2000582	0	-	AC216900	NA	NA	LINE	L1	L1HS	ggtactctacctacagggttatgctctcagctaaaactcctccttggtcctgagccaacatggactctggaagcttctttctccctgatgctggctgagg<br>agtggaggttgggagtaggagtggtggtatcagtaccctgcctatggaaaattggagtttacctatagtgacctaccatggaatcagtgttcaaaacatc<br>taggagactaaagagctaggacttctcaagcctgcaagacagttttttatgtgctactttgattacaagaatttagttaataaatgtatatactgtatat<br>gtggcagaatttggtctgggatttgctttcattataatgtagtaatagatttattggagagcagacctatagttctcacccatttc<font color="green"><u>AAAATCCTATGGAG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTTCATCTGAGGTAC<br>CGGGTTCATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGTCAGTGTGTGTGCGCACTGTGCGCAAGCCGAAGCAGGGCGAGGCACTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGATGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTACGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCACTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACAGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACGCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAAGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCTA<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATCAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGAGCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATT<br>GTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGACTTAAATGTTAGACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>ACCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGATTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTGAGAGTATAATAAAAAAAAAAAAAGAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATCCTATGGAG</u></font>atcaatcc<br>taagtaaaaccagggctttttggagaaatgactaatttcatgcttcaggggtgagaggtacaagatgaacttggaatatcttgttatgccaaaaatttct<br>gataggcatatcagaaatgataggcatgtcaaaaggacacaagagggatcccacttccaagaagactaagtaggcatgcttttccttattccttccacta<br>aagaacagaaaccaataaaattcaaaacagaaaaacgatagagaaaaatcaatcaaacaaaatgctcattctttaaaaagatcagtaatattgacaaatc<br>tctataatgactgagaagtaattaaataagaaaaaaagacacaaatgcccaataccaggtaataaaagaagggaaatc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:SLC22A15:NM:018420:2/12	
0	chr1	163819774	163819775	2000583	0	-	AC225591	NA	NA	LINE	L1	L1HS	taagtgaatatttaatgagctagtggaagatgtatacctccacagttaacatgagctttggagtcacacctggttccatcacttactcagttacttgtgt<br>atgaggatacttataacacttggtcataagttgtttgagatataagtttctagagtgtctataaaacctctaatagggtatctggcacagagtcactcag<br>taaatggtagctattaattgagtagaattttgagaaattaccatcaatggcttgaatgtaaagctaaactcaggcacggggaagggcatgggcagtgatc<br>cataaaggagacactttgggcttggggcagcgaggtaagcttgggtagcacccacgggtagaaatgggactcttactctttgtgtt<font color="green"><u>AGAATTATGGTAAA<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGATGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGGCAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACATGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCTATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAGAAAATACTTTACA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTACCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCACCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCTCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTACGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATATTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAAATATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATATCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAATAAATAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAATTATGGTAAA</u></font>aacacacacaccaagagacggtctgggg<br>aagagcctgccagcctaacaagaagttagcacctttggaggagagctctggttccatcagagaggctgtgtttttggaaggatcctttttgtagaatttc<br>agtacttagcttagtgttcattgcactgacttgaattgcctctgaagtcagagggagtcttcttaatattcttcatggcggcaaatcttccgcttatgag<br>gtggattctacaattcagagccacatctaatgaattaggtaggggataaagccaagtaattctgattcagattaaaagagaagaccaaactagtgtgatt<br>attttttttccccctctggcttaagctggcttttgaaaacaacagtatgagtaagtta	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr11	36515074	36515075	2000584	0	-	AC217815	NA	NA	LINE	L1	L1HS	attttgttttgttttgcttttgtgtgaagaacacttaacacgaggcctaaacatatttatttaaacatattttaaagtgcacaataccatattgttaact<br>atagatactaggttgtacaacagatctctagaacttactcatcttacataactgaggctcaacaggtataaagattttttatttctactaaagttaggaa<br>aatgatttctgcctctgaattgttttattgttgttgtttgttttgtatttaaagtgaatatattggccgggcacggtggctcactcctgtaatcccagca<br>ctttgggaggccgaggcaggtggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctac<font color="green"><u>TAAAAATACAAAAAATTAG<br></u></font><font color="red">AGGGAGGAGCCAAGATGGCTGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCAAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCACTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCACCATTGCCCAGGCTAGCTTAGGTAAACAAAGCAGCCTGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACCCCTGAACCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGA<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCATCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACACTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAGGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACTGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCAGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAGGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAATGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAACACCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGTGATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAATTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACTCCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGAGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAATACTTAGAGTATAATAAAAAAAAATAAATAAATAAATAAATAAATAAATAAAAAT</font><font color="green"><u>TAAAAATACAAAAAATTAG</u></font>cccgggcgtggtggcaggcgcc<br>tgtagtccccagctactcgggaggctgaggcaggagaatggggtgaacccgggaggcggagcttgcagtgagctgagatcgtgccactgcactccagcct<br>gggcaactgagcaagactccgtctcaaaaaataaataaatacataagtaaatttactttatatatgtagtataaatataaaatttttatttagtttataa<br>aatataaatattttatttactttatatatcctcatcctttcacctacctatgctatttttcttcttaatttatttgtcttttaaaaaactttgaagtata<br>ttacacatacaaaatgtttttatgcacagtacgattaatgtttataaagcaaataccca	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr9	93456591	93456592	2000585	0	-	AC226114	NA	NA	LINE	L1	L1HS	ttgggatttttaaaccttgcacattccagaggaagggctggcccttggctggctcctgggagaaaagctctaaacccttagaatacccttcctgataaga<br>atgtgcttgtatacctgcccatcttgggccactccagataacttatgctaacaatgtgatttatggtgggggccttgggccatgcagtatcaacttgacc<br>cctggaggagctggagactaactaaggccagtcacttgggccatgcatgtctacaggactgatcccctgtaagaatcctggccactcaggctggtgtgag<br>catctgtggaaggcgatactgcctgcatgttgaaatacattgttgctgggagaatttctatattattctgttcttgcattgctgt<font color="green"><u>AAAGAAATACCTGAG<br></u></font><font color="red">GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACCGGTGATTTCTCCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTGGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAATGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAACAA<br>AGCTGGATGCAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATTCTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATATTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCAGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGTGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTCCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATGAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAAGGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATTCGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCATTAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCCACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>CCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACCGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCACATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGTGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAAAGTATAATAATAATAATAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAATACCTGAG</u></font>actgggttatttatttatttat<br>tatgagatggagttttgctcttgttgcccaggctggagtacagtggtgtgattttggctcactccaacctctgcctcccgggttcaagcgattctcctgc<br>ctcgacctcccgaggattacaggtgcctgccaccatgcccagcaaatgtttttttttgtatttttagtagaaacatgattttgccatgttgtccagactg<br>atcttgaactcctgacctaaagtgatccacctgccttggcctcccaaagtgctgggattacaggcatgagccaccatgcccagcctatttcattttcttg<br>acttatttcactagctaggacttccagtattgtgtcgaatataggagtgtgtattagggttct	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr3	132552470	132552471	2000586	0	+	AC226062	NA	NA	LINE	L1	L1HS	gttaatttggtgcctgttgggtactagtactgtgcttagtagtttaagggccttcattggatcttttcactaacttgagagagatagagtgaaagagaga<br>gaaagagagagagagagagaacagagaaagagagatgctcaggttaggtaatttgcttagtcactcagctgcaagaagcagagttggcatttgaaactag<br>gtctgtcgcattccagaatccatactcttaaccagtgtctatcagaattttcaaccatggaactatattagatttgcttgtgaagctttttaaacataga<br>cacatttaaatatactgttaatgaaaaaattattgacacttattgaaatggcaaaaagactgtaatcaggactattttgataggtatc<font color="green"><u>AACAATATTGCA<br></u></font><font color="red">AGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCAACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGTGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACACAGCTGGAGATCTGAGAACTGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCACCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAGCAGACCTGCAGCTGAG<br>GGTTCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGTCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGTGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGAACATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAACAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAAATCAG<br>GATTAAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACAGCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATAATCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGGGGGGAGGGATAGCAT<br>TGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTA<br>CCCTAAAACTTAGAGTATAATAAAAAAAAAAAAGAAAGGAAAAAAAAAAAAAAAAAAAAAAAAGAACTTATACATCTTTCTTTTTGGTAGTTTTTGAAAT<br>AAATTTAACATAGCTATAGAAAAAAAAAAAA</font><font color="green"><u>AACAATATTGCA</u></font>atatgggagaggcattgggctcaactctgaagtttctttgctgaagcaaagaaaact<br>agagattaatagccaattagcaggatacgggccttggtggatggaaaatttctaaaaggagtattcaaaggttgggggttgtattcatctgtttagtgtt<br>gccataaaagaataccagaagctgagtaatttataaagaaaagaagtttatgtagctcacggttttgtaggctgagaagttcaacggcatggccctggct<br>tctggcaaaagctgttgtgttccatcacaacacggcaatgaaggggaagtggacaagtaggaagacagagaaacctgaggggtgtcctggcattataaca<br>cccaccctttggggaaataatccattccttc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	downstream:NEK11:NM:001146003	
0	chr12	33908606	33908607	2000587	0	-	AC209011	NA	NA	LINE	L1	L1HS	ggagaggtagctgaattatttgatgtggagaaaccaacacaaagagtcaaggaaaatgaagagatgatgaaatattttctaaataaaaggacaaaataaa<br>aatccagaaccttacactgatgaaatggatatatgcgatttacctaagagaattcaaaataatgggataaagatgtgtatggaagtcaggacagcaatgt<br>atgaataaagtgagaatttcaacaaagggataggaaatgtttttaaaatgtcaaccccacaaatcaaggggctgcagaatacaataaccagactgaaaaa<br>ttcaatagagagtctcaacaggagtttagatcaagcataggaaaaaattagcaaacttgaagacaagtcattaagatcatttaatt<font color="green"><u>AAAGAAGCAAAAAG<br></u></font><font color="red">GATTTCTTGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATC<br>TGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCT<br>CACCTGGGAAGTGCAAGGGGTCAGGGAGTTCCCTTTCATAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCAGGTCACTCCCACCCGAATATTGC<br>GCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACA<br>GCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGA<br>ACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTC<br>TGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCA<br>AGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCT<br>GCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGT<br>AGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCA<br>GCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCA<br>AAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAAC<br>CAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATG<br>AAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTACGTGAAAAGACCAAATCTACGTCTGATTG<br>GTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGT<br>TCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAA<br>AAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTTGGCAGAAACCCTACAAGCCAGAA<br>GAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAA<br>ATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCAG<br>TACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGA<br>CAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGA<br>CCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAA<br>CAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGG<br>GATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGA<br>CTTAGACTCCCACACATTAATAATGGGAGAGTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTG<br>AACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATT<br>CCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTCTCTCTCAGACCACAGTGCAATCAAACT<br>AGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCA<br>GAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCAC<br>TAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAG<br>CAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAA<br>AGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAAAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCA<br>CCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACACAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACAC<br>ATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAA<br>AAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAG<br>AGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTT<br>GATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCACT<br>GGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAG<br>AAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGA<br>CAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTC<br>AACATACTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTGTTCAG<br>ACGACATGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGT<br>ACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATAC<br>CTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACA<br>TTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGAC<br>TTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGA<br>GGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAA<br>CAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATG<br>GTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAAC<br>GTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAA<br>TGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAC<br>ATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCC<br>ATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCA<br>GAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGG<br>AGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCGTTGTGGAAGTCAGTGTGGTTATTCCTCAGGGATCTAGAACTAGAAATG<br>CCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAGGGACTATAAATCATGCTGCTATAAAGAGACATGCACACGTATGTTTATTGCGGCATTAT<br>TCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCAT<br>AAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATA<br>TTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGTGAGGGGGGAGG<br>GATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTG<br>CACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAGAATTATTTCTTGATGAGTTAAGATATTATTTCCGTTTTTCATTTTTATTATCTC<br>AAGTATGCAATGGAGTTTTTCAAGGAGTTATATGACAGGTGATATTGCAACTCATTGAATGCAGAAGACATAAGAATCCAGCTGTCTTCCACTTAGAGAT<br>TTTCTAAAATAAGATGTGACTCTCACTAAATGTTTTTATTTTGGAACGAATTCATAAAACTATGTCATTTTTGCTAACATGTAATGGGCTTACTATTGTT<br>ATTTTAATTAAATTGATAAATATATATTTAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAGCAAAAAG</u></font>ataaaaggaaaaataactaaagatagcttaggaaacttacga<br>caccaaataaagtgagccaatatatgcattctgggagtccaaaaaaagaagagaaagagaaagagggtttattcaaagaaataatggctgaaaatttccc<br>aaacctgctgaaagaaatgaacatcagtttcaaaattcccaaaggacagaaaatagaatgaatgcaaagagatccacatcaaaaaatattataatcaaat<br>tatcaaaagttaaagacaaagaaaattttgagagcagcaagagaaaagtgacttgttatattcaagggaaactctatgaaactatcagcagacttttcgg<br>cagaaaccttccaggccaggaggaagtgggatgatatattcaaa	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	36423781	36423782	2000588	0	-	AC209560	NA	NA	LINE	L1	L1HS	atcgtattccacattagaacatcctgctaggttgtatggtacttccatgtccttacttgctgctttgggtggtggccatttaccttattcagaaccatga<br>gttcacctaaggcctactgaccaatagagcttctaggtctttcccatctccttgtcttcttaaatgctgaaatggccggggaaatgagacaaactggcct<br>aaagtgataaattgatttcatcattgtcctgttcctcagctatctaaaacctgtctaggtgatgcagatactgcatttgtcagtgtcagaactgtgcaaa<br>tgcaatatatccttgtaacaaacctgcacatgtaccccctgaatctaaaataaaagttgaaattat<font color="green"><u>AAAAAAAATAAAAATTTAAAAAAAGAACTGTGCA<br></u></font><font color="red">GAGAACTATTTCTTGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATT<br>TCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCA<br>TTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAA<br>TATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCT<br>AGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAA<br>GCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGT<br>AACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCC<br>TCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAAC<br>AGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACC<br>AAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCC<br>TCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTC<br>AAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCT<br>GAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAAT<br>GAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTC<br>TGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGC<br>CAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATG<br>AAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAG<br>CCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAATAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGA<br>AATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAAC<br>AACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATTGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCA<br>TAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAG<br>TCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAAT<br>GGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGG<br>TAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACA<br>AAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAG<br>GAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACA<br>CCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAAT<br>CAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATG<br>AAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTA<br>TAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAA<br>AGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTT<br>TTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATA<br>TCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCT<br>CGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCA<br>ACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAG<br>AAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAAT<br>ATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGTTGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTC<br>ATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAG<br>ATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTAT<br>CTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTC<br>CTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGT<br>TTGCAGACGACATGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAAT<br>CAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCGTAATTGCTTCAAAGAGAATA<br>AAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGA<br>AGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACC<br>AATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAA<br>GCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGA<br>ACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAA<br>TAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGAT<br>TTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAA<br>AAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACC<br>TACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAAC<br>AACCCCATCAAAAAGTGGGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGG<br>CCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGG<br>ATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTA<br>GAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGG<br>CACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGC<br>AGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACAC<br>CGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGG<br>GGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCAC<br>AATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAA</font><font color="green"><u>AAAAAAAATAAAAATTTAAAAAAAGAACTGTGCA</u></font>aagatgtaaacatctttcttctt<br>gttacattctgaaagccaccaaaggagtaaagggagagttccttttggtttgtttctcattataaacttttttttttaagttcctaaaataaaattgtgg<br>gagtctaagcatatcatcagggaagcttatctgcaagtagagcagtaaaacactcattttaaaagtgccttaggaccaggcgcggtggctcacgcctgta<br>atcccagcactttgggaggccgaggcgggcagatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactgagaataca<br>aaaaataagccgggcaaggtggcgagcgcctgtagtcccagct	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr8	72561791	72561792	2000589	0	-	AC217513	NA	NA	LINE	L1	L1HS	gactggtttgggctcagatactaggagcatgttcacactgggagggcttctggagatcatctgcatgaacccctcattttacagatgaaactgagcctga<br>gaatgttaacccacagtaattaaattaaacttaatgtagaaagtgggatttatctgtttcttaaataatatgtgagctacatctgagatgcttttctggg<br>ttagtacccacttcaaatacttagtctcattgtccaaataatacatttgaatttctgagattgtttcctggtactcctctttgtttttgaacagaagaga<br>ttgggaaaatgtggttatcattgacaaactgcttattaggtatgtgatcttgattaaaccatttaggtccatgaaacccttgct<font color="green"><u>AGAAATTTAAGAGAGA<br></u></font><font color="red">GAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGG<br>GTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAG<br>CGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGAC<br>CGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGA<br>TCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAG<br>CCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGAAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAA<br>GTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACGGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAACTGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAGAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAATAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAAATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCGAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCTGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCATCCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAA</font><font color="green"><u>AGAAATTTAAGAGAGA</u></font>ataatgagtcttaccttgttcctcactcttgaatttggaaccacctgagaagt<br>gacgcacaagtcacacaaatggagatgaaaatagcacttctgttaccaataaggcagacttagaaactgaggcaacctaccagagctgggatctctaata<br>ttcattctcttcctttgtttctttcagcatgaccctgagacaactccctggtgggagagtttgggtctgcagggcagacgtgctttcttagaacctcacc<br>cttgcatccactgggagcagaaagagaaagcaagctgaactcctgatctgcccctgctgtcaggtcttggctctgggccttgacctgctgcttacacaga<br>ggagggtgggaaccgaataggatccaggtct	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chrX	68613611	68613612	2000590	0	+	AC208589	NA	NA	LINE	L1	L1HS	aagaaagaaactaaaattaataatctaagcttccagctatgaaactagagaaagtagaatgatttaagcctaaagcaactagaaaaaagaaaaaattaaa<br>tcagaaatcaatgaaattgaaaacaggaaaacaatacagcaaatcagcaaaaccaaaaacttgttcacttgtttgtttgcttgtttaaaaaaaaggtaaa<br>taagatcaataaacctctagctagactgactgagggaagaaaaagaaggcaaaaaattccaatgtgaaaaatgaaagtgaagtcatcactgctgatccta<br>tggacattcaaaagataataaaggaataatatgaacatccctatgctcacaacttgacaacttatatgaaatggaacaatttctt<font color="green"><u>GAAAGACACAAACTA<br></u></font><font color="red">AGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGATGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGAAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGG<br>TCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCT<br>GAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAA<br>AACCACAAAGATGGGGAAAAAACAGAATAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACA<br>GAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCA<br>AAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGC<br>TCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGA<br>GAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTAC<br>CTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACATTCAGAT<br>TCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATG<br>TTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCTGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGT<br>GGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTT<br>TATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAG<br>CCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGAT<br>CAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATC<br>AGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAA<br>AAGGCAGGGGTTGCAATCCTAGTCTCGGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAAGCCATTACATAATGGTAAAGGGATCAA<br>TTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGA<br>CTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCA<br>GCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAA<br>TTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACT<br>CAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATA<br>AAGATGTTCTTTGAAACCAACGAGAATAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATG<br>CCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAG<br>GCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATC<br>AACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATC<br>CCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACAC<br>TCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGT<br>CCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAA<br>TCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAA<br>CATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCAAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATG<br>CAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAG<br>CCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACC<br>CACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATA<br>GTGTTGGAAGTTCTGGCCAGGGCAATCAGACAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACA<br>TGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAA<br>ATCACAAGCATTCTTATACACCAACAAAAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGA<br>ATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCAT<br>GCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTT<br>CACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATC<br>ACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGC<br>CCTCAGAAATAATGCTGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTG<br>GGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAA<br>CCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGAACTTCATGTCCAAAACACCAAAAGCAATGGCAA<br>CAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGA<br>GAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATGAAA<br>AAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAA<br>TGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCAGAGAAAT<br>AGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTT<br>GACCCAGCCATCCCATTACTGGGTGTATACCCAAATGAGTATATATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA<br>TAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAA<br>TGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCA<br>CTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGC<br>ATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATG<br>TACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGACACAAACTA</u></font>ttaaactggcacaaggagaaatagatcatttgaataggcc<br>tatatctagcagagaaattgaattaatcattcataacgttacaaaaaaaatagttacaggcccaaatagtttcactggtgaactctaccaaacatttaaa<br>gaagaaatgctacaaattatctacaatctcttccagaaaaaaagataaaaaatattccttaactcatactatgaggccagcattaccctaatatgaaaac<br>ctaataccactgccctaataccaaagataaagacattacaagaaaagtcaactacagaacaatgtctctcatgaatacaaatgcaaaaatcctctacaaa<br>atagtatcaaactgaatccacaatgtataaaaactatacacatga	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr9	5481419	5481420	2000591	0	+	AC207594	NA	NA	LINE	L1	L1HS	gggacatcacacactggggcctgtcgtggggtggggggaggggggaggggtagcattaggagatatacctaatgtaaatgacgagttaatgggtgcagca<br>cacctacatggcacatgtatacatacgtaacaaacctgcacgttgtgcacatgcaccctggaacttaaagtataataataataattaattaattaattaa<br>attgcattcatatgaatggtacctattaaaattgcattgatatgcaattttaataagtaccattatatcagaatgtgtccagggatctacagaaaattat<br>gttcacaaaaatactgacagcaattatctctgtggttgagtatttgggtaatatttactgttattttttacttttttttggtatttaa<font color="green"><u>AAAACACTTAGC<br></u></font><font color="red">CGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGGCAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGG<br>TCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCT<br>GAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAA<br>AACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACA<br>GAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCA<br>AAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGC<br>TCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGA<br>GAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTAC<br>CTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGAT<br>TCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATG<br>TTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGT<br>GGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTT<br>TATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAG<br>CCGCTGCAAAATCATGCCAAAATGTAAAGACCATTGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGAT<br>CAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATC<br>AGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAA<br>AAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAA<br>TTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGA<br>CTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCA<br>GCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAA<br>TTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACT<br>CAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATA<br>AAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATG<br>CCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAG<br>GCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATC<br>AACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATC<br>CCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACAC<br>TCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGT<br>CCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAA<br>TCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAA<br>CATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGTTGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATG<br>CAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAG<br>CCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACC<br>CACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATA<br>GTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACA<br>TGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAA<br>ATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCGTAATTGCTTCAAAGAGAATAAAATACCTAGGA<br>ATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCAT<br>GCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTT<br>CACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATC<br>ACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGC<br>CCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTG<br>GGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAA<br>CCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAA<br>CAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGA<br>GAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAA<br>AAGTGGGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAA<br>TGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAAT<br>AGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTT<br>GACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA<br>TAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAA<br>TGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCA<br>CTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGC<br>ATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATG<br>TACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACACT<br>TAGC</u></font>aatgatacaatgtgctatctgaaaaaaactaaactttttaaaatataaatttgaggggaaaatgaactaagttagtaatgttttgggaataagatc<br>atgggttggccacaccaagcaggtaatggcacaaggataagataattaacatttattaagcacttattacatgccagccggccctgttctaagcactttc<br>cgtgtatcaactcatttcatttgcacaactccacaaagcaagtcttttatggtgcccattttacagataatgaaatgaaacaggcaccaagagaggaagc<br>cgtttgtttgaagtcttacggctggcaggaggtgaaacagagatttagacagaggtctgcttccaaaatctctgagcgtgacccctgtgctc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr11	67355623	67355624	2000592	0	+	AC226138	NA	NA	LINE	L1	L1HS	tgcttatggaatccaggcaatgggcaaagagaaaaagaaaactatggaatcaaccagatgcagtggctcatgcttgtaatcttggcactttgggaggttg<br>aggcaggtggacttcttgagtccaggagttcaagaccagcctggcccacatagtgagaccccgtttctacaaaaaatacaaaaagttgctgagcatggtg<br>gcatgcacctgtagtcccagttacttgggaggctgaggtgggagaactacttcagcccaggaggttgaggctgcagtgagccatgattgtgccactatac<br>tccagcctgggtgacagagtgaggtcctgtctcaaaagaaaacaaaaaagataagaaaaagaaaactagggcatctggacagaataagtttatatatata<br><font color="green"><u>NNNNN</u></font><font color="red">ATATAATAAAGAACTGAGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGAT<br>TTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAG<br>GGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTC<br>CCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCG<br>CTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGC<br>AGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGTCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAA<br>GACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGA<br>CAGACTGCCTCCTCAAGTGGGTCCCTGACTCCGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGT<br>ATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCAT<br>CAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAAC<br>GCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGA<br>GGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTG<br>ATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATG<br>AAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAA<br>TCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCA<br>AGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAG<br>TTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAAC<br>CCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGT<br>GAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAAAGCTCCTGAAGGAAGCGCTAAACATGG<br>AAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAACGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGC<br>TAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGG<br>ATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACC<br>AAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTA<br>CATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGT<br>GACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGG<br>ATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACC<br>ACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCAC<br>AGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATA<br>ACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGG<br>GAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACA<br>CATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAAACCCTTCAAAAAATCAATGAATCCAGG<br>AGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATA<br>AAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGA<br>TACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAAT<br>AGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCC<br>AATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTT<br>TAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAA<br>GTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTA<br>TCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAAT<br>AAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTC<br>TCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAAT<br>TGTCCCTGTTTGCAGACGACATGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGG<br>ATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCGTAATTGCTTCA<br>AAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAA<br>ACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCAT<br>CAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAA<br>AAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGGGATATAG<br>ATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTC<br>CCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGG<br>ATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCA<br>AAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAA<br>CAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAA<br>AAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCAT<br>CATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTG<br>CTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGAT<br>CTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGT<br>TTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGA<br>ATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAA<br>ACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTC<br>GGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACT<br>AACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>aaagaactgagatagaactgggtt<br>gactgaataattatttgaattgcttttgagtgaatttttcctattggagtctacctttgtttttgtgtgtgtgtgcgttttttgttttttggtttttttt<br>tggtttagttttgtctttgtttttttttcagactgggccttgctctgttgcccaggctgctggagtgcagtggcatgatctcagctcactgcaacctctg<br>cctcctgggttccagcaattcttctgcctcagcctccccagaagctgggactacagggcatgtaccaccaagcccagctaatttttgtatttttagtaga<br>gatggggtttcaccatgttggccaggcctgctcttgaactcctaggctcaagtgatccacctgcctcagcctccca	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr2	144021450	144021451	2000593	0	-	AC214987	NA	NA	LINE	L1	L1HS	actttcctagtttcttcatctccttcattcatgttaagtaggatatcagacatttcaataagtagaagaaaatctcactgacttcttcaaatgttacaaa<br>aaaaaaaaaaagtcatccctcctcaatttggatacaggagtaaaaccactgtcttgcctcattattagaattttcccttatatttatacttagttcttgc<br>cacaatatctaaccaattttttttttataattggagatgcttatctatacctttggaatccggaagtataggcagtagtatactttcaaaaatattattt<br>cctggtttccatttgctgtgattctttatggatcaggcttgtttgtgtatatagcctctatacatctaatttaattcccacctt<font color="green"><u>TAAAATGATTCCTTTT<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGT<br>CCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACATGGCAGGGTATTCCAACAGACCTGCAGCTG<br>AGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAA<br>ACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAG<br>AACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAA<br>AGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCT<br>CGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAG<br>AAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACC<br>TGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATT<br>CAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGT<br>TAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTG<br>GGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTT<br>ATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGC<br>CGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATC<br>AAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCA<br>GTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAA<br>AGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAAT<br>TCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGAC<br>TCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAG<br>CTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAAT<br>TGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTC<br>AGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAA<br>AGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGC<br>CTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGG<br>CAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCA<br>ACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCC<br>CACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACT<br>CTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTC<br>CAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAAT<br>CCTCCCTAACTCATTTTATGAGGCCAGCATCATTCCGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAAC<br>ATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGC<br>AAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGC<br>CTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCC<br>ACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAG<br>TGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACAT<br>GATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAA<br>TCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCGTAATTGCTTCAAAGAGAATAAAATACCTAGGAA<br>TCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATC<br>CTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTC<br>ACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCA<br>CACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCC<br>CTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGG<br>GAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAAC<br>CTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAAC<br>AAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAG<br>AAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAA<br>AGTGGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAAT<br>GCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATA<br>GGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGAGATTCCTCAGGGATCTAGAACTAGAAATACCATTTG<br>ACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAAT<br>AGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAAT<br>GATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCAC<br>TCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCA<br>TTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGT<br>ACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT</font><font color="green"><u>TAAAATGATTCCTTTT</u></font>aacttaaggattaccaaatg<br>gtaatcaaccagggaaaagacaaggggaaaaagttccagtgtggctaatgtgatatagattgataagccatttatgtaccttaatacctggttaacatga<br>aacaatagtggaacaatagtgtcctatttgtgtcttattttctgcacattcattcttacatatctctctaagctcagctaagaatttgaggcctaactgc<br>atgaagcctgtaggatagtagacataaatgtgacttacagatatatgccagccttaggatcatttggaaatctctgaagataagaaagatctcagcaaga<br>ttctgagtttgcttgagaaatttctctagaaaagaacctagcatcagtggtctgatcagaccaa	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:ARHGAP15:NM:018460:10/14	
0	chr16	33662535	33668580	2000594	0	-	AC221021	NA	NA	LINE	L1	L1HS	atgactctagaggaccacatgtgaaatgcaacaagcaggagcagaagacaagtaattcattatttcactgtagtgcattaaaatggtagactcacagaag<br>tagaatagaatgttggttaccaggggctggaggggtggactagaaaaggagagattttggtcaaagtgtaaaatgttccagttagacagaaggagtaagt<br>tgcagtgttctaatgcacaagatggaaaatatggctatgaatgcattgtatatttcaaaatggctaaaaatgtaaatgttaaaatttttcccactaagaa<br>attatacaggtcgggagtgggggctcacacctctaatcccagcactttcggaggccgaggtgggtggatcacaaggtcaggagttc<font color="green"><u>AAGACCAGACTGGC<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGT<br>CCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTG<br>AGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAA<br>ACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAG<br>AACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAA<br>AGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATATCCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCT<br>CGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAG<br>AAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACC<br>TGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATT<br>CAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGT<br>TAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTG<br>GGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTT<br>ATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGC<br>CGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATC<br>AAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCA<br>GTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAA<br>AGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAAT<br>TCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGAC<br>TCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAG<br>CTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAAT<br>TGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTC<br>AGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAA<br>AGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGC<br>CTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGG<br>CAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCA<br>ACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCC<br>CACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACT<br>CTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTC<br>CAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAAT<br>CCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAAC<br>ATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGC<br>AAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAATGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGC<br>CTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCC<br>ACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAG<br>TGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACAT<br>GATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAA<br>TCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCGTAATTGCTTCAAAGAGAATAAAATACCTAGGAA<br>TCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATG<br>CTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTC<br>ACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCA<br>CACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCC<br>CTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGG<br>GAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAAC<br>CTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAAC<br>AAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAG<br>AAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAA<br>AGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAAT<br>GCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATA<br>GGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTG<br>ACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAAT<br>AGCAAAGACTTGGAACCAACCGAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAAT<br>GATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCAC<br>TCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCA<br>TTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGT<br>ACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACCAGACTGGC</u></font>caaaatggtgaaaccctgtctccactaaacacacaaaag<br>ttagccaggcgtggtgttgggcgcctgtaatcccagctactcgggaggctgaggcaggaaaattgtttgaacctgggaagcaaaggctgcagtgaccgag<br>atcgcaccactgcactccagcctcggcgacagagtgagactcagtctcaaaaaaaaaaaaaaaaaagaaattacacatttgtgaggtgatggatatttta<br>aatagcttgattaacaattccatgatgtatacatgtatcatagcatgtgtgaagcgacctacctgtatgaaggtgaggtgacctggtcacgtgacagtga<br>ggtgacctgggggatgtgtgaggtgacctgggggatgtgtaaggtta	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr8	85591176	85591177	2000595	0	+	AC219164	NA	NA	LINE	L1	L1HS	ctatttgcctggtttgtggtggtcgggggcagggtagggggcggtgtggggtggggctgagagtgggagaggtgggtggggatatagttaattcaaattg<br>gcaatatcaataagaactaaaaataatagtagacatctgggtttccagtcatacattttagatggttgtaaacacatttaatgaactcagcaataattaa<br>tatctaatatgttcaaaaccatgagctaaattatatcacagggttaaaatgtgtatgacatatacacatagtttataatatatttcatccatgcacttaa<br>taagaaaaataatatacctaatatgcataagtggagagatatacaccagaagtattttacttttttttgtataatatttccttaat<font color="green"><u>TAAAAGCCAAATCC<br></u></font><font color="red">CGGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGTGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGAAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGG<br>GTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGC<br>TGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATA<br>AAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAAC<br>AGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAAACAAAGGC<br>AAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGG<br>CTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCG<br>AGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTA<br>CCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGA<br>TTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAAT<br>GTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAG<br>TGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACT<br>TTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCA<br>GCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGA<br>TCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCAT<br>CAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAA<br>AAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCA<br>ATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAG<br>ACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTC<br>AGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCACAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAA<br>ATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTACAAC<br>TCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAAT<br>AAAGATGTTCTTTGAAACCAACGAGAATAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAAT<br>GCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAA<br>GGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGAT<br>CAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGAT<br>CCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACA<br>CTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAG<br>TCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGA<br>ATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGA<br>ACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGAT<br>GCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAA<br>GCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTTAAAATAATAAGAGCTATCTATGACAAAC<br>CCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACAT<br>AGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGAC<br>ATGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAA<br>AATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGG<br>AATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCA<br>TGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCT<br>TCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCAT<br>CACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAG<br>CCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCT<br>GGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAA<br>ACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCA<br>ACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGG<br>AGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAA<br>AAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAA<br>ATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAA<br>TAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATT<br>TGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACA<br>ATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAA<br>ATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTC<br>ACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAG<br>CATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACAT<br>GTACCCTAAAACTTAGAGAATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACATACAAAAAAAAAAAAAAATAAAAAAAAAAAA<br>AAA</font><font color="green"><u>TAAAAGCCAAATCC</u></font>atatatttaaatttcataaatgaaaccctagtctgaagaagctactttgtggctcgtttttagagctgtataatatatttaag<br>cactacagtttgaagcattttaaataataatatagtactgtaagaataatttatgtatgaagttcattttgaaactctttggtgacaactctattggacc<br>aaaattgatatcaacaaaccaagcaaagttgtatttttaatatgaagaaaggataaatgaacttaaatataagcaggagacttcacacctttctccactt<br>tgctggggtgaacatccctggttatcaagtctgcattaagatatcccaatgcaagagggtatctgtctctgttcagggtggatctctcttcagctgggga<br>ttc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:RALYL:NM:001100391:1/9	
0	chr22	21045604	21045605	2000596	0	+	AC217064	NA	NA	LINE	L1	L1HS	gtttgtgtcatctatgatttctttcagcagtgttttgtagttttctttgtagagttctttaatctccttggttaggtatattcctaagtatttttttttt<br>ttgcagctatttgttaaaggggttgagttcttgatttgatattcagcttggtccctgttgttgtatttgtgtgccttaattttgtatcccgaaactttgc<br>tgaattcattcaccagttctcggagctttttgaatgagtctttaaagttttctaggtatacgatcttattataagcaaacaatgacagttttacttcctc<br>tttaccaatttggatgcccttaatttctttctcttgtctgattgctctggctaagacttccagaactatgttgaacagaagtggt<font color="green"><u>GAAAGTGGGCATTCT<br></u></font><font color="red">TGGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGG<br>GTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGC<br>TGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATA<br>AAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAAC<br>AGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGC<br>AAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGG<br>CTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCG<br>AGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTA<br>CCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGA<br>TTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAAT<br>GTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAG<br>TGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACT<br>TTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCA<br>GCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGA<br>TCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCAT<br>CAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAA<br>AAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCA<br>ATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAG<br>ACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTC<br>AGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAA<br>ATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAAC<br>TCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAAT<br>AAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAAT<br>GCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAA<br>GGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCGGGAGCTGGTTTTTTGAAAGGAT<br>CAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGAT<br>CCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACA<br>CTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAG<br>TCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGA<br>ATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGA<br>ACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGAT<br>GCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAA<br>GCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAAC<br>CCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACAT<br>AGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCGATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGAC<br>ATGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAA<br>AATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCGTAATTGCTTCAAAGAGAATAAAATACCTAGG<br>AATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCA<br>TGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCT<br>TCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCAT<br>CACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAG<br>CCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCT<br>GGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAA<br>ACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCA<br>ACAAAAGACAAAATTGACAAATGGGATCTAATTCAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGG<br>AGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAA<br>AAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAA<br>ATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAA<br>TAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATT<br>TGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACA<br>ATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATGAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAA<br>ATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCGCATATTCTC<br>ACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAG<br>CATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACAT<br>GTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGTGGGCATTCT</u></font>gtcttgttccggttctcggaagaaatgctttta<br>agttttttctgttcagtataatgttggctgtgggtttgtaatagagggctttcattaccataaggtatgtctcttctatgccagttttgcagagggtttt<br>aatcatgaagtgatgatggattttatcaagtactttttctgcatcgattgagataatctgtgatttttgttcttaattctgtttatgtggtatattacat<br>ttattgactttgtatgttaaaccatccctgcatccttggtaagaaacccacttcatcatggtggactatgatttgatagctgttggattgggttagcaag<br>tatttagtttaggatttttgcatctatgttcatcagggatataggtctgtag	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	167553208	167559454	2000597	0	+	AC216097	NA	NA	LINE	L1	L1HS	tgacaaataggacatttgcataatctcaaagtatcttcccacagatatgccttaatttcaaagaagaaaacccaactttgcatgagcagtaataagacat<br>gtggatatcaagcaccccctactctaatgcacttgaaagcatctaacattacctctgttgtattattgccaaatacctgtaaactcaatgtattaagaag<br>aaaaccgcagacaaacccaagctaagggacattctactaactgcctgccagtattctttagaagtatcaaggcctgaaacacgataaaagactgaggaac<br>tttcagattagtcgagacacaggaggcatgacagctgagtgcaatgtggaattctgaatttgatcctgggccagaaaaaaaaattaatggg<font color="green"><u>AAAACTTTA<br></u></font><font color="red">AGTTGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACAGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCGGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCTAACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACTGCAGGGTATTCCAACAGACCTGC<br>AGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAG<br>ATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGC<br>AACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACAGGAGGACATTCAAACCAAA<br>GGCAAAGAAGTTGAAAACTTTGAAACAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCA<br>AGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAA<br>GCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGT<br>GTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTC<br>AGATTCAGGAAATACAGAGAACTCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAA<br>AATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGA<br>GAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAAT<br>ACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCCCTAAACATGGAAAGGAACAACCGGTA<br>CCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACA<br>GGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACC<br>CATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACA<br>AAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGA<br>TCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACTCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACT<br>TAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAA<br>CTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCC<br>AAAATTGACCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAG<br>AACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGA<br>AATAAAGATGTTCTTTGAAACCAATGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTA<br>AATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACCCATTCAAAAGCTAGCA<br>GAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAG<br>GATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACC<br>GATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACAT<br>ACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAA<br>GAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAG<br>GGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGA<br>TGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGG<br>GATGCAAGGCTGGTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAA<br>AAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACA<br>AACCCACAGCCAATATCATTCTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAA<br>CATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGAC<br>GACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTAC<br>AAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCT<br>AGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATT<br>CCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTT<br>TCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGG<br>CATCACACTACCTGACTTCAAACTATACTACATGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACA<br>GAGCTCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGT<br>GCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGT<br>TAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATG<br>GCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAAT<br>GGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCAT<br>CAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGA<br>GAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAG<br>AAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGGAATACC<br>ATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTC<br>ACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACAATGGAATACTATGCAGCCATAA<br>AAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATT<br>CTCACTCATAGGTGGGAATTGAACAATGAGATCACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGA<br>TAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCA<br>CATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAATTTGAAGGCTTAATTTAATGTGTAGGTAAGGCTTCCAATAC<br>TGCATTTCAATAGCACTTCTGGATGTCTTCAAATTACAATATGGTAGGACAGCAATGATGTTAATGATATTTACGTTGAATCCATTCTTCAATTGCAGTG<br>TAATGTCAAAAATTAAAGCCTGGATTCCTCAGTCTATCAAAAAAAAAA</font><font color="green"><u>AAAACTTTA</u></font>aaaatttgagtaagatctaaaggtgagttaatagtattatgtc<br>agtgttaatttcctcatttcagtaactgtactatggttatgtaaatgatgatgtcattaggggaaactagtttaagggtttacaggaattgtgtactaca<br>tttacacatttttaatcctataaatattatacaataaaaagtaaaaatgagaaaaatgtgggctttgacttctttttttttttgaccgagtctccatctc<br>agctcactgcaacctccgcctcccgggttcaagtgattatcctgcctcagcctccctagaagctgggactacaggtgcgcaccacctcgcccagctaatt<br>tttgtatttttagtagagatcaggtttcaccatgttggccagggtggt	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:XIRP2:NM:001079810:1/9	
0	chr9	71967243	71967244	2000598	0	-	AC212493	NA	NA	LINE	L1	L1HS	ttaggaggaggtctgtgtggaaacccacctacaaggttgtgttagtccaaggggtcagactgcccctaggcctgtcaaagttcataaaagttcctggtta<br>aagtacccacgagtccaggtgccatggctcatgcctgttcccaacactttgggaggccaaggcaggcagattgcagccagttcgagaccagcctgagcaa<br>catggcaaaaccccctctctactaaaagtataaaaaattagctgggcacggtggtgtacacctgtagttccagttactcaggaggttgaggtggaaggat<br>cacctcggcccgggaggttgaggctgcagtgaactgtgatcacatcactgcactccagcctgggtgacagagtgagatcctgtcttaa<font color="green"><u>AAAAACAAAACA<br></u></font><font color="red">GGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCTCTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCGCCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGG<br>TCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGAGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCT<br>GAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAA<br>AACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACA<br>GAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCA<br>AAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGC<br>TCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGA<br>GAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTAC<br>CTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGAT<br>TCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGTCAGATTCACCAAAGTTGAAATGAAGGAAAA<br>AATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACTCTACAAGCCAGAAGA<br>GAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCACAAGTGAAGGAGAAATAAAAT<br>ACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTA<br>CCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACA<br>GGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACC<br>CATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACA<br>AAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGA<br>TCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACT<br>TAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAA<br>CTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCC<br>AAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAG<br>AACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGA<br>AATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTA<br>AATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCA<br>GAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAG<br>GATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACC<br>GATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACTTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACAT<br>ACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAGCCAAAAA<br>GAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAG<br>GGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGA<br>TGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGG<br>GATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAA<br>AAAGCCTTTGACAAGATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACA<br>AACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCGCAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAA<br>CATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGAC<br>AACATGATTGTATATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTAC<br>AAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCT<br>AGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATT<br>CCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTT<br>TCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGG<br>CATCACACTACCTGACTTCAAACTATACTGCAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACA<br>GAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGT<br>GCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGT<br>TAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATG<br>GCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACAT<br>GGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCAT<br>CAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGA<br>GAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAG<br>AAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACC<br>ATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTC<br>ACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAA<br>AAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATT<br>CTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGA<br>TAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCA<br>CATGTACCCTAAAACTTAGAGTATAATAAAATAAAAAAAAAAAAAAAAAAAAAGAGCCATGACA</font><font color="green"><u>AAAAACAAAACA</u></font>aaacaaaagtacccaggaaagaaa<br>aagtagagaatcaggtatgtcaggaattcatgttctcaaaccaaatcaagataggttttaaaataatcagggttattgcttttcactttataggatgtta<br>tagtttaacaactaccaaatataatgaatagaattttgccaggaaatggaggaaataaattttgttgggtgctgtgaagtcaaatcaaatcaaatctttg<br>ttatatagttcaaaaggactgtttgtgttaaagaactaaacactggctgtattaaatattttttcactgccttttagagtagattccatgacctgcttga<br>tagacatggtagactaggttgttgggttaatccaccatctactttaccaattgaatggccccat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:MAMDC2:NM:153267:9/14	
0	chr11	20525767	20527754	3000001	0	+	PRMT3; RIP_SVA_chr11_020_01	NA	NA	OTHER	SVA	SVA_E	ttgtttattcctcacagtctctctgatcctggcctaaaagaactgggccacaatctgatgatcaaaacaactggtgcaggacaattgctttgatttgctg<br>ttggcttcaaatctggattaatggttgcctttctaattaagcctctgagcacaggatttaaaaactcacaggtgtcaggtccttaaaatggaccagcccc<br>tcctactctgtctcaaggctccttttctattacataaaaaatattttttaatatcctttttactatcctgaaattgaattcataaataatataagccact<br>tatgcacatgattttaaaaatcattataatgttcttagtacattatataggagacataagaagaatctattacaaaatacatatttt<font color="green"><u>AATACAGAAATGT<br></u></font><font color="red">CTCTGTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCCTCTCTCCCTCTCCCTCTCCCTCTCCCTCCCTCTCTCCCTCTCCCTCT<br>CCCTCCCTCTCTCCCTCTCCCTCCCTCTCTCCACGGTCTCCCTCTGATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCC<br>CTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGTCGCCAGGCCTGACTGGTTTTCGTTTTTTTTTTGGTGGAGACGGGGT<br>TTTGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCAGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCAC<br>TCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTAAAACCACCTCCCACCCGCCTGCCTTGGCCCCCCCAAAGTGCCGAGA<br>TTGCAGCCTCTGCCCAGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCCCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGC<br>CCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAG<br>CGTCTCTGCCCGGCAGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTG<br>TCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAAACCCTCTGCCTAGCAACCGCCCCGTCTGGGAAGTGAGGAGCCCCTCC<br>GCCTGGCAGCCACCCCGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAACCCCCGCCCGGCCAGCC<br>GCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGG<br>GGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGG<br>CCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGTCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCC<br>ATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTC<br>TGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGA<br>CAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCGGGGTCTGTGTGGATAGAAGTAGACATGGGAGA<br>CTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGT<br>GTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTA<br>ATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCC<br>CTCCACTGTTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAATTAAAAAAAAAAA</font><font color="green"><u>AATACAGAAATG<br>T</u></font>ttgattacatcctaactagagacataatgaagtactcagaagtctacacctacacatagaatcatggatatacttacacatagaaccacatgctacacc<br>tatgcgtagaatcatggatatacctacacatagaaccacgtgctatacctatgtgtagaatcatggatatacctacacatagaaccacatgctacaccta<br>tgcatagaatcatggatatacttacacatagaaccacatgctatacctatgtgtagaatcatggatatacctacacatagaaccacgtgctatacctgtg<br>cataaaatgatggatatacttacacatagaaccacatgctacacctatgcatagaatcatggatatacttacatatagaaccacatac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr12	68881132	68883844	3000002	0	+	CNOT2; RIP_SVA_chr12_068_01	NA	NA	OTHER	SVA	SVA_E	aatatatacacatataatatatacttgcctaatttaatcaatatcctaaaaataaacgtttatctgtcctacatatgtaacatagtttatgtaataattt<br>tcctgttcttagacatttaaattatttcaaaattttaattataagaaacagtgagcaaaacatgatgatataagaaattttattatcatctctacttatt<br>tccataaaaaatcctgtaaatgcaactattgggtaacagaatataaatatttcaagacttctcatagtttactaaaattacactcaaacagtagaaatag<br>taaatatgtgggtaagtatataaataacaaatatatgtatatgtttctttccttattgaaaacacatatgactgtttaaagc<font color="green"><u>AAAAAAGTATGACACTTC<br></u></font><font color="red">GCTCTCCTTCTCCCTCTCCCTCTCCCTCTCCCTCCCCCTCCCCCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCA<br>AGGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAGCCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCACCGC<br>CACGCCTGACTGGTTTTCGTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCGCGAGTGATCCGCCAGCCTC<br>GGCCTCCCGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTGCAAC<br>CACCTCCCAGCCGCCTGCCTTGGCCTCCCGGAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCC<br>ACCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTGGGAAGCGAGGA<br>GCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCT<br>GTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAGCCCTGTCTGGGAGGTGGGGAGCGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTC<br>TGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCAGCAGCCACCCCGTC<br>CGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGA<br>GCCCCTCTGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGCGGGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCC<br>CGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGACGCCCCGTCCAGGA<br>GGGAGGTGGGGGGGTCAGCCCCCCGCCGGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGG<br>AGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTG<br>CCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGTCATCCCCCCACCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCC<br>CGGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCT<br>GGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCT<br>ACTGGAAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGG<br>GGGGGGGTCAGCCCCCCTTCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGG<br>CCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGACAGCCCCCGGCCCAGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGTCCCTAC<br>TGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGA<br>GGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGG<br>GCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTCTGTGGATAGAAGTAG<br>ACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAA<br>CATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAGGATGTGCTTTGTTGAACAGATGCTTGAGGGCAGCATGCTCGTTGAGAGTCATCA<br>CCACTCCCTAGTCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACTTTTGTTCACTTGTT<br>TATCTGCTGGCCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAATAAATAAATT<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGTATGACACTTC</u></font>actaatattaatgggtttataacaaatgtagatgtaatatatatgacaataatagcactaaggagaagg<br>ggtaaatggaatttgctcttgtgagttttctatatttcatctggactaattcaatataactaggtagactgggattagctaaggatccactttgtaaaca<br>ctagaaaaagtaaaaaataatgaaaaatgtagctacaaagtcaacagagaaattaaaatggaatatgaaaaaatatttgattaacataaaaggaagaaaa<br>tgaggaacaaaaaaccaaaaaaatttggtaagacaaatagataataaacagcaaaatggcagagctttaaatacaatcatatcaataagtatatcaaatg<br>caaataaactaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	42437810	42439447	3000003	0	+	EPSTI1; RIP_SVA_chr13_042_01	NA	NA	OTHER	SVA	SVA_F	aaaactcatctcaaagtttaatacattctagaattttcttttctacccccaagtccctcccacacacacatacctgactaaccctagataatgcatataa<br>caggaagtcaaaatgagaatcctgctcattttctgctaaggcttcaagacaacagatgccgagcgcttcaaattccaaagggaggtaatggcccctcaaa<br>gcaggatctgcaaggaggtaactgaaacctaccttggggaaccttaactaacttcagcctataaaagaggttggttaggtcaaagggaggcagaaatctg<br>aggaaagatgtcattctgaattctatgtcttctgtgttttgaggaaggagaaatcttcacaccagatgagcaggagaagtttaat<font color="green"><u>GAAAATCAGCTGGAG<br></u></font><font color="red">TCCCTGTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCGTCTCCCTCTCCCTCGTCTCCCTCTCCCTCTCCCTCCTCT<br>CCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCGTCTCCCTCTCCCCACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTC<br>GGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGTCTGCCGAATGCCTGCAATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGAC<br>GGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCGAGTGATCCGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCG<br>TTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTACGCCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGT<br>GCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCC<br>TGGCTGCCCAGTCTGGAAAGTGAGGAGCATCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATTTAGGAAG<br>TGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAAATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGA<br>GACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAG<br>CCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTAAGGAGCGTCTCCGCCCGGCAGCCAC<br>CCCGGCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCCGCCCGGCCACCACCCCGTCTGGGA<br>GGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATG<br>GTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGAATCCTGTTGATCTGTGA<br>CCTTACCCCCAACCCTGTGCTCCCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTT<br>GAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAA<br>CCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATC<br>AATAAAAAAATAAATTAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATCAGCTGGAG</u></font>acctcaacctgcatttttaagagtctgagggtcttattggattcatg<br>cctagaacagttagagcctaaaggtataaggctgttgtccattggccactgagatgagtcctcaagaagaggtagctacattacaaatggcccacattca<br>cagtttatgaaaagaaagaatgcacaagtatttcctgtacttttaatgtgattctcatgaaagagaatgccaacctaaagccatctaaagggacttgcct<br>atgagggccatgtcaagaacaatggaaccctaaaaggagtctaccaagagccaacagtgaggccaagccctgccgacaggagaggaaatcgtctgtatca<br>gggaaatccaggtgggagatgggtagcagagagtgggg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:EPSTI1:NM:001002264:3/13	
0	chr13	48849416	48851857	3000004	0	+	FLJ12577; RIP_SVA_chr13_048_01	NA	NA	OTHER	SVA	SVA_F	aaaagttgaatagtagatagatagatagatagatagatagatattaaaattgaaaagcaccactgacatccttttacagctggcttacctcaaagtctat<br>cagctgcaggtcagctatcagtgtcactagcaggccactgctgtagagttcttgtgctagctgagccactgcttctgttgggggttctttctcgtttgta<br>ccacacagaatttctttcattgcttgcagtgatttagacacttcttctgaagcctagtgaccaaaacgtatgctaacggttaaaagaataaaaatgttta<br>ggccataaacaaacaaacaaataatccaaaaaaccacttcttggtcttgggctctgtttatttataatgaatggcacagtt<font color="green"><u>ACAAACAAACAAAAACAGT<br></u></font><font color="red">GAGGGGAATCACCATGTTTGGGTGGACCTAGTTTCTAATGGCTTGCATTTACATATCAAAGGTTGCCAGCCTGGCTCTAAGAGCCGGGGCTATACAAGAA<br>ACTTTTTCGGCTCTCCCTCTCCCTCTCCCTCTCCCTCTGTCTCCCTCTCCCCACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCAT<br>CTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCCAGTGCCTGCCATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGA<br>GACGGGGTTTCGCTGTGTTGGCCGGGCAGGTCTCCAGCCCCTAACCGCGAGTGATCCCGCCAACCTCAGCCTCCCGAGGTGCCGGGATTGCAGACGGAGT<br>CTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCA<br>AAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCG<br>CCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGA<br>GATGTGGGGAGCGCTTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGTGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCG<br>GCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCCGCCCCGTCTGAGAAGTG<br>AGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCATCTCCGACCGGCAGCCACCCCGTCAGGGAGGGAGGTGGGGGGGGGTCAACCCC<br>CCGCCCGGCCAGCCGCCCCATCTGGGAGGGAGGTGGGGGGTCAGCCCCCCCGACCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCC<br>ACCTGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCGGGAGGTGAGGGGTGCCTCTGCCCGGCCACC<br>CCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGG<br>AGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCTGGCCGCCCCTACTGGGAAGTGAGGAGCCCC<br>TCTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGTGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCC<br>CCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGT<br>CCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAG<br>GAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGTGTCAGCCCCCCGCCCGGCCAGCTGCCCCGTCCGAGAGGGAGGTGGGGGGGGT<br>CAGCCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCA<br>CCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCAGGAAAGGTGGGGAAAAGATTG<br>AGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTG<br>TTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTA<br>AACAGATGCTTGAAGGCAGCGTGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCT<br>GCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACC<br>CAAGAATTATCAATAAAAAAATAAATTTAAAAAAAAAAAAAA</font><font color="green"><u>ACAAAAAAACAAAAACAGT</u></font>aagcactgccttttttattttggaaaatattataagtat<br>tataaaatttatttatataaaacagctctttggtatttctacttagtcaacatacactaaataatcttttttttttttttttagatggagtcttgctctg<br>ttgcccaggctggagtgcagtggcacaatcttggctcactgcaagctccgcctcccaggttcatgtcattctcctgcctcagcctcccaagtagcgggga<br>ctacaagcacccgccaccacgcccggctaatttttatacttttagtagagacagggtttcactgcgttaaccagatggtctcgatctcctgaacttgtga<br>ttcgcccacctcagcctcccaaagtgctgggattacaggcgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CAB39L:NM:030925:2/9	
0	chr14	34577467	34579258	3000005	0	+	C14orf24; RIP_SVA_chr14_034_01	CAAAAACAACCATGTCAGTGAGAATC	CATCATTCCTACAACTCATGGCTC	OTHER	SVA	SVA_F	taaacaggtggcaacaaaaccaggaaatttgctggagctaaagccccataatatgcatattaatgtaacagtaaaattaatatgttagtattttagtgaa<br>tttaggaaatctaaacagcaaatcataatataaaataaatttgaatgaatttattttacaggtagctctggtacatatacacatacaagcaaatatttca<br>gtaaaaaatggaacaaagtattgaaaattaaaatgtgaaggaatttcaacttgatgcttatgtagagtaaaatattttagtatttgaatacagagagcag<br>ccagagaatttgaatgaggtctaacaaaaacaaccatgtcagtgagaatcatggttaaataacaatataattactgatcctcctc<font color="green"><u>AAGACTTACGAATAG<br></u></font><font color="red">AGCGCCGCCCGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATT<br>GCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCC<br>AGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCG<br>TCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTC<br>TGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGC<br>CCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCGGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCACCTGGCCAGCCG<br>CCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGTG<br>CCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCTAGCCGCCCCGTCCGGGAGGTGAGGGGCACCTCTGCCCGGCCGCCCCTACTGGGAAGTG<br>AGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGG<br>GTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGC<br>CTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAG<br>CCGCCCCGTCCGGGAGGGAGGTGGGGGGGGGTCGGCCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACT<br>GGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGA<br>ATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGC<br>ACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAAT<br>GGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGA<br>CACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATG<br>ACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATTAAAAAATAAATTTAAAAAAAAAATACAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTTA<br>CGAATAG</u></font>ttattgataaatgaatagctattggtaaagccaagtaaatgatcatattcaaaaccagaaggccatcatcacagctcaagtctacatgatttg<br>atctctttatcattgtcattctttggattcactagattagtcatcatcctcaaaattctgccccaagttctaattacgttccaaacatttaggggttaca<br>tgaagcttgaacctactaccttctttgcttttgagccatgagttgtaggaatgatgagtttacaccttacatgctggggattaatttaaactttacctct<br>aagtcagttgggtagcctttggcttatttttgtagctaattttgtagttaatggatgcactgtgaatcttgctatgatagttttcctccaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr14	64430150	64433293	3000006	0	-	SPTB; H14_E_66; RIP_SVA_chr14_064_01	CTACCAGTCTTGCCTTCAGCTT	AAAACTGTAGGATTGGCCAGAA	OTHER	SVA	SVA_E	gagggtgcatagctttcattacatacaggagtttgttacccagaaagagtaagaaccattcttatgaatcactacttctacagcaatgtttttactttgt<br>cctaactcattacttgcaaaggaattttttaaagtaccagtagttgtttcatagacaacagaaccagtcaaagaatcatttaggatagttcctgatgcta<br>cttccaaacctctaccttgtccccactttgctaccagtcttgccttcagcttaattgaagaacaaaataatgagatcacacacatgatgtacaaagacct<br>caccatctgccacatacatcttccttttcacgccttcttttggaggcctctgctattttcacaggagatttttatccagattcccactat<font color="green"><u>GAAAATTCTT<br></u></font><font color="red">GTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCC<br>TCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCATGCCGAGCCAAAGCTGGACGGTACTGCTGCCA<br>TCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTT<br>TTTTTTGGTGGAGATGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCTGGGATT<br>GCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTG<br>GCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCATCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGG<br>AGCCCCTCTGCCTGGCTGCCCAGTGTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATC<br>CCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCT<br>CTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTG<br>AGAAGTGAGGAGCCCCTCCGTCTGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTC<br>AGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCGGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGC<br>CCCGTCCGGGAGGGAGGCGGGGGGGGGGGGTCGGCCAGCCGCCCCGGCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGC<br>CCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAACCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCC<br>CCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGC<br>CCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCC<br>GGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCG<br>GGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCC<br>CTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCC<br>CCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTC<br>CGGGAGGGAGGTGGGGGGAACAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAG<br>CCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGCGGTGGGGGGGTCAGCCCCCCTCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCC<br>GGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAAT<br>GGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTT<br>TCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCC<br>ACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCT<br>TAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCC<br>ACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAATAAAAAATAAAAAAAAAAAAAAAAAAAAAAAGAGC<br>ACGAAGTGAGAAGAAGCTGGCCTTGCCCTACTTGGATTATCAAAGGAAGTAACAACTCTGGACAAGGAGAGATTGCTCTGCCTGGTGATAGCAGAGGAGT<br>CTCAGAACCAGAGGAGGAGGTGGCACATGGCTTTATCCTGTGCACCTCTCCCTCACTTAACAACTTTCATTCTTCCTGAAAATGAAAGCCTGCCATATGC<br>TTGCTGAGCTGTGGACTTTTCACGAGCCCAAGTGAAAAGCTGTTAAATGAAAACATATCTTTTTTAAACATTTTTAGGGAATAAATTATGATGCTCTCCC<br>TTCCAACTCAAGACACTCAAATAATCCTCACAGATAGAAAAATGTATCCATTGAACAATGAGAATGAGTTTATGTAAGTAATAACAATCGGAGAGTAAAT<br>AAATGCAGTTTGCTCATCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATTCTT</u></font>taatgaacccttctttctcatgccaacatttctggccaatcctaca<br>gttttagataagaatttattttaagaggaataaaatctcttataacagtgccaatttgaagtgctagatccattagcttttcctgataaactttagaaaa<br>agggaatgggaagtaaacttctggcttactattaaaaacctgcttcttggtcagttttctgcaaaagctgtctctccttcttcctctctctcatggatta<br>ttaataatttttctgtatctttctcctttctatcgtattccctttgggattcactcttccccagtgatttaatttagttaatgttctaattagtgcaact<br>tccacccaggagattccttgagctttcacatcagtgcttttcca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	3375	225	NA	intergenic
0	chr17	18731879	18732888	3000007	0	-	PRPSAP2; RIP_SVA_chr17_018_01	GTTAAGCCAGCCAGCTACTGGG	GTTGCCTCCGGCATAATCACATGG	OTHER	SVA	SVA_F	taccatacaacaagcactaaataataactacttagcaaatgaacaaaaaatgattaatttgaataatttagtacagttgcctccggcataatcacatggc<br>tcagctgtatctacaggaaagcctaatttatccaacactctcaggaagtaaggcagtaaaatatatttccatttgggcactttcattatttttgctggca<br>gtctttctaaactttttcatgtatttccttgtctcatcaaacatcatcaaacattaccaaacccagccaagaaaagacagaaccaagaaaacagttaata<br>acaattaaaggacctaaaagaaaggactctaacaaaaacaagtctattgtctctacggaggttaaaatgggaaattatatacaac<font color="green"><u>AAGAAAGAACAAGTT<br></u></font><font color="red">GAGGTGAGGGGCGCCTCTGCCCGGCCACCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGCGAGGGAGGTGGGGGGGTCAGCC<br>CCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGC<br>CCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCC<br>CGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGACCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGC<br>CCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTC<br>ATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTA<br>GAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGT<br>GCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATACTTGAAGGCAGCATGCTCGTT<br>AAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCAC<br>TTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAAGAACAAGTT</u></font>attatgaaaaagaaccaaaaataaatctagggggaagaagttattatggtctaaagaaacccagtagctggctgg<br>cttaacagcagaataaacacaactttaagaacaaaccagggaagatcaagacaaggaatttccccagaatgctatatataagtatgcaaaaagtaaaata<br>agtttttaaaagttatagagactagatccaaaattttcaggacctaatagttcccaaaggaaaataataaaagaaatagaagggatgaaatacttaacag<br>attaaaaaaaattcccaaagatggccaggcacggtggctcatgcccataatcccagcactttgggaggccaaggtgggcagaacatctgagccaagacca<br>gcctggccag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:PRPSAP2:NM:002767:7/12
0	chr17	61695520	61696576	3000008	0	+	PRKCA; RIP_SVA_chr17_061_01	NA	NA	OTHER	SVA	SVA_F	gctgttaagaaaagctgaatcttgtctaaaaacagtcccatctataatattaagtctggccctagggtttgtgttaataaatggctatagtgtaaaacaa<br>cctgaaacttctgctttgccaattctattctagatgtggatgagtcagggttctgggttgcaagaaacagcgagtaattggcaaacgtgagcagaaaagg<br>aatgcactggaaggaaatcagggagctcatgtattcttcgagaaggctggagaatcaggcttggaaaaggcagagccaagggaggtgtgggagcaggaag<br>cccagcaaggggctgcacagacagcatgactctcccccttcttttttaatagcgtttttttatttgtgcagtaagccattggctt<font color="green"><u>AAAAAATGTTTTAAG<br></u></font><font color="red">TGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCG<br>CCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGA<br>GCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCGGCCCCCCGC<br>CAGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGGGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGG<br>AGGGAGATGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGAGAAGTGAGGAGCCCC<br>TCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGTCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAG<br>GTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAGGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTC<br>TGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCGGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCA<br>AGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCCTTAAGAGTCATCACCACTCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAG<br>GCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCTCC<br>TCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATGTTTTAAG</u></font>cattttaaagttacagtttagtagcatt<br>aagtacattcacattgttatgcaaatatcatcaacctctatctctggatttttttcattttcctaagctgaaactctgtatccattaaattctaactcct<br>aactcctcatttgccccttctcccggctgctggtaaccaccattctactttctgtctctatgaatttgactattctaagtactgatgcaagtacttagta<br>taagtactaagtactgatgtgatgtaagtacttagtatgagtactaagtactggtgtaagtacttagtataagtattaagtactggtataagtacttagt<br>ataagcattaagtactggtgtaagtacttagtataagtactaagtactggtgtaagt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr17	26329734	26332540	3000009	0	-	RNF135; RIP_SVA_chr17_026_01	CAAACATCCACGAGCATCAAGACC	CTCTGATGCATTCTTCAGTATGTC	OTHER	SVA	SVA_E	tgcaagagtcacagctttactgggcttggggtgccccctaatgcagatacggcttagatcacaacgcccaagtcctttcaaattcctggaaagccttccc<br>aagaaggacaggtacaaacaagcccagactgtgaagactacaataaataactaactcttcaatgcccaggcactgacaaacatccacgagcatcaagacc<br>attcaggaaaacatgaccccaccaaactaactaaataagtcaccaagagccaattcaggagaaacagaaatatgtgacctttcagacagagaattcaaaa<br>tagctgatttaagaaaactcggagacattcaagataacagagaaggaattcagaattctatcaggtaaatttaacaaaatgatt<font color="green"><u>GAAATAATTAAAAATC<br></u></font><font color="red">GGTTAAGAGTCATCACCACGCTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCTGAGCCAAAGCTGGACGGTACTGCTGCCATCTCG<br>GCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGTCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTT<br>TGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGA<br>TGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTC<br>CCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCTTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGGAGCCC<br>CTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCCTCTTCCCCGCCACCATCCCATC<br>TAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCT<br>GGGCCGCAACCCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAG<br>TGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCC<br>CCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCGCCCCTACTGG<br>GAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGCTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGG<br>GCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGC<br>CAGCCGCCCCATCCGGGAGGTGAGGGGCTCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGA<br>GGTGGGGGAGTCAGCCCCCCGCCTGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGT<br>GGGAGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCG<br>GCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGG<br>CCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCC<br>AGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACT<br>GGGAAGTGAGGAGCCCCTCTGCCGGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGTCGGCCAGCTGCCCCGTCCGGGAGGGAGGTGGGGGG<br>GGTCAGCCCCCCTTCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGC<br>CGCCCCGTCCGGGAGGGAGGTGGGGGGGACAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGA<br>AGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGG<br>CGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCAGCTCATTGGGGATGGGCCA<br>TGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACAT<br>GGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTAGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATG<br>TGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAC<br>TCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGA<br>CCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAATAAAAAATAAAAAATAAATA<br>AAAAAAA</font><font color="green"><u>GAAATAATTAAAAATC</u></font>aagcagaaattctggaatcgaagaatgcatctgacatactgaagaatgcatcagagtctctcaatagcaaaatcgat<br>caagtattagaaagaattagtgagcctgaattcagcctatttgaaaatacacagtaagaagagacaaaagaaaaaagagaatgaagcatgcctacaagat<br>ctagaaaatggcctcaaaggggcaaatctaagaattattggccttaagaggaggtagagaaagaaatagtggtagaaagtttattcaaagaaataatagc<br>atggaacttcccaaatctacagaaagacatcaatatctacatacaagaaggttataaaacaccaagcagatttaacccaaagaagactatgtgaaggcat<br>ttataat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:RNF135:NM:197939:1/4
0	chr19	57787835	57789420	3000010	0	-	ZNF137; RIP_SVA_chr19_057_01	NA	NA	OTHER	SVA	SVA_D	agatcacctgaggtcgggagttcgagaccagcctgaccaacatggagaaaccctgtctctattaaaaatacagaaatagccgggcttggtggcacatgcc<br>tgtaatcccagctgctaggcaggttgaagcaggagaatcgcttgaacctgggaggtgggggttgcagtgagccgagatcgcaccattgcactccagcctg<br>ggcaacaagagtgaaactctgtctcaaaacaaaaaacaaaaaacaaaaaaaacagaacaaaaggccaggtgcggtggctcatgcctataatcccaacacc<br>tggatggaggctgaggcaggcggattgcttgagaccaggagttcaagaccagcctggccaacatggtcatatcccatctctaat<font color="green"><u>AAAAATACAAAATTAG<br></u></font><font color="red">TCCCCTCTCCCTCTCCCTCTCCCCATGGTCTCCCTCTCCCTCTCTTTCCAGGGTCTCCCTCTGATGCCGAGCCGAAGCTGGACGGTACTGCTGCCATCTT<br>GGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCTGAGTGCCTGTGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTATTTTT<br>TTGGTGGAGACGGGGATTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGGGAGTGATCCGCCAGCCTCGGCCTCCCAAGGTGCCGGGATTGCAG<br>ACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTCCACCTCCCAGCCGCCTGCCTTGG<br>CCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCACCACCCCATCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGA<br>GCCCCTCTGCCTGGCTGTCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCTGCCACCCCGTC<br>TGGGATGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAGCCACCCCGTCTGATAAGTGAGAAGCCCCTCCGC<br>CCGGCAGCCGCCCCGTCTGAGAAGTGAGAAGCCCCTCCGCCCAGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCTCCCGGCAGCCACCTCGTCCCG<br>GAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCACCCCATCTGGCAGGTGAGGGGCGCCTCTACCCAGCCGCCCCTACTGGGAAGTGAGGAGCCC<br>CTCTGCCCGGCCAGCCGCTCCCTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCAGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGG<br>CCGCGCCTACTGGGAAGTGAGGAGCCCCTCTGCCCAGCCACCACCCTGTCTGGGAGGTGTACCCAACAGCTCATTGAGAACGGGCCATGATGACAATGGC<br>GGTTTTGTAGAATAGAAAGGGGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGTGGTGTCTGTGTAGAAAGAGGTAGACATGGGAGACTTTTCA<br>TTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTTATCGGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTATCCACT<br>CAGGGTTGAATGGATTAAGGGTGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCCTTAAGAGTCATCACCACTCCCTAATCTCAG<br>GTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACT<br>ATTGTCCTGTGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATGATCAATAAAAAAAATAAAAATAAAATAAAAATAAA</font><font color="green"><u>AAAAATACAAAATT<br>AG</u></font>ccaggtatggtgacatgcatctgtaatttcagttaggttgggaggctcaggtatgtgaattgcttgagcccagaaggtggaggttgcaatgagctgag<br>atcacgacactgcactccaacctgttcaacactctgtctcataaaaacaaaatgaaacaaaaaacacaaaaccacaagcgcagctggaaacacttgtcag<br>tcagtgtgatgctttctatctcatatcctgggccatggtgacaattccgctcagggcctccaggggcatctctgcctagagcaggatgatgttcaatctt<br>attagtcaaagtgttcttcatgaattttctggttttatgtaaaaccactccataagggagtctctaagaagctgtccatgacaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr19	58380990	58383763	3000011	0	-	AK09261; RIP_SVA_chr19_058_01	NA	NA	OTHER	SVA	SVA_E	tcttgtctattcacacacacacacacacacacacacacacacacacagaaaataaagcctttctttctcatctactctttcaactttaaaacaaaaaata<br>aggctgggcatggtggctcacgcctgcaatcccagcactttgggaggctgaggcaagcagatcacctgaggtgaggagttcgagaccagcctggccaaca<br>tgatgaaacgtcttctctactaaaaatacaaaaattagctggccgtggtgatgtgcacttttaatcccagttacttgggaggctgaggcaggagaatcgc<br>ttgaacccaggaggcagagcttgcagtgagctgagatcacaccactgcactccagcctgggtgacacagctagactccatctcaaaaaaaac<font color="green"><u>AAAAACCC<br></u></font><font color="red">GGTCAAAAATTTAATCTGGATTACCCAGCATCTCCTATAAGAAACAAAGGGGCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCCCCTCC<br>CTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCAAGGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGC<br>CTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCACCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTTGGTGGAGACGGGGTTTC<br>GCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACTCA<br>GTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTGCAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCGGAGAGCCGAGATTGC<br>AGCCTCTGCCCGGCCCCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAG<br>TCTGGAAAGTGAGGAGCGTCTCTGCCTGGCCGCCATCCCATCTGGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTC<br>TCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAGCCCTGTCTG<br>GGAGGTGGGGAGCGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCC<br>GGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCAGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCC<br>CCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGCGGGGG<br>GGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGG<br>CCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGACGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTC<br>CGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGTTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGG<br>GAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGGTCAGC<br>CCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCC<br>CCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGG<br>CCGCCCCTACTGGAAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGTCGGCCAGCCGCCCTGTCCGGGAG<br>GGAGGTGGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCCCCGTCCGGGAGG<br>TGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGACAGCCCCCCC<br>GCCCAGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGTCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCG<br>GGAGGGTGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCC<br>CCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAA<br>GGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTCTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCT<br>TCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTG<br>CAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCCTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGA<br>AGGCCGCAGGGACCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCC<br>CCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAATAAATTAATTAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACCC</u></font>ttaactacttttccttct<br>gtagtaagttcccctcttctatgctctatttaagagaatagtacacaaaaacttctttgtgttccttttttttcttttctcactttctcttctgttttcc<br>tggctttaaggacataccattaacctttttaaactgtttgttttcaagtttttgatacctcgctgatcacgtcacgctttcctcttctggtgtctcttga<br>tttttctgttccctaaatgtggactatgcacggcttactccctgagcttcttggttcctgtccacacccaatgtgggtggcaagccacccaggtgctgag<br>gcaagagaccaaggacacgagctgtttcagtataataaaatataaaacaagaatagttataccagatatagatc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ZNF665:NM:024733:1/4	
0	chr1	25031291	25034096	3000012	0	-	CLIC4-A; H1_E_43; RIP_SVA_chr1_024_01	AGCCATAGCCAATGATCAAGTT	TTCATCGTTTCCTGGAATTCTT	OTHER	SVA	SVA_E	gctgatttttgtatttttagtagagatggggttatgccatgttggtcaggctggtctcgaactcctggcttcaagcgatccacctgccttggcctcccca<br>agtgctgggattacaggcgtgagccaccgcacctgacccggtaatattttttacttaggaaaatatcaaacaaattagaatgtgttacctacctaagtga<br>taagtggcaaggtcaaagatctacccattttattattaaaggatcatgctagccatagccaatgatcaagttagcttatttcttagatgaaacataacca<br>gcagagggcactggaacccagtaaaataaagttgagacattagcagagctcaactacagaagtgacaagagaaacaagccactt<font color="green"><u>AAAAATAAAAAATCAA<br></u></font><font color="red">TATAAAACGTTACTGCTCGCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCTC<br>TCCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCC<br>TCTCCCGTCTCCCTCTCCCTCTCATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGC<br>CTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTGGTGGAGATGGGGTTTCGCTGTGTTGGCCGGGCTGGTC<br>TCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCT<br>GGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACC<br>CCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTGTGGAAAGTGAGGAGCGTCT<br>CTGCCCGGCCGCCATCCCATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTC<br>TGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGTGTCTCTGC<br>CCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCTGGCAACCACCCCGTCTGGGAA<br>GTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCT<br>CCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGGGGGGTCGGCCAG<br>CCGCCCCGGCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGT<br>GGGGGGGTCAACCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGC<br>GCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCC<br>AGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAG<br>CCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCC<br>GCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGGTGGG<br>GGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCG<br>CCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGAACAGCCCCCCGCCCGGCCAG<br>CCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGCGGT<br>GGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCCGGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCG<br>GCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAA<br>AAAATTGAGAAATCGGATGGTTGCTGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGG<br>GATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAGACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGC<br>TTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCAGCAGG<br>GTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAG<br>AAACACCCAAGAATGATCAATAAAAATAAAAAATAAAAAAAATAAAAAATAAAAAAATAAAAAATAAAACGTTACTGCTCAAAAGAAAAAAAAAATAAAA<br>AATAAA</font><font color="green"><u>AAAAATAAAAAATCAA</u></font>aaacataaaataataaacataaatttttattaattatattcaggccagcaataatgcatatagttagctgaaatgtaa<br>agtttataaattaacaggagaatacaatgtgagaaacagctaggtcagtaagaattccaggaaacgatgaaacactttctatgggtatatttaagaggaa<br>aaaagagaaaaggagagagcagaatctcaaggttgtaaaacaagagttaatatgcttcttattaaaggcagtgaatgcatggccgggcatggtgcttcac<br>acctgtcatctcagtactttggcaagccaaggcaggtagatcacctgaggtcagcagttcaagaccagcctggccaacatgatgagacctcgtatctact<br>aaaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	3121	301	NA	intron:CLIC4:NM:013943:4/6
0	chr1	113412863	113415300	3000013	0	+	LRIG2; H1_F_163; RIP_SVA_chr1_113_01	TTGTAAGGGATTGGGGTTTATG	TCTAACCTGTATCCTCCGCAGT	OTHER	SVA	SVA_F	agtctagtgattagatgtgacaggaaagaatggggggaaagcacaggcaatcctgagacttctagtttgaaagaatagaattgatcaggttagttagcta<br>tgactttgcaaagagtaaagtcccgaggtaaggagatatagggcagctaaattgtaagggattggggtttatgttaaggtgtggaacaagggatatcaag<br>tgagtagtttttttttttttaagtaatctggagctggggtattctgtgcttatggattccactgaactctaaaatctcagcccaggtactttagcaccca<br>cgaattaattagacaatttagggcaatgaatataaaagctctatattccattgttaatcagaaatgaatcattaaattctgtt<font color="green"><u>AAAAACACATATTTGCG<br></u></font><font color="red">CTAGAAAAAGTAAATTATGGGAGTCGGCGCCGGCGAGCGCCGCCCGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGC<br>AGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCG<br>TCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCT<br>TCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGA<br>TGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGC<br>AACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCACCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGT<br>GAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAAGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGG<br>GTCAGCCCCCACGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGG<br>TCAGCCCCCCGCCCGGCCAGCTGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCTCCTCAGCCCAGCCAGCC<br>AACCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGTAGGGAGGTAGGGGGGTCAGCCCCCCGCCTGGCCAGCCG<br>CCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCAGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAG<br>TGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCATGTCCGGGAGGGAGGTGGGG<br>GGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGC<br>CGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGG<br>GAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTG<br>GGGGGGGTCGGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTC<br>AGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCA<br>GCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACC<br>CCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAG<br>AAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTT<br>GATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAA<br>CAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGC<br>CTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCA<br>AGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAAA</font><font color="green"><u>AAAAACACATATTTGCG</u></font>gctgggtgtggtggctcatgcttgaaatcccagcactctgggagg<br>ccgaggcgggcggatcacctaaggttgggagttcgagaccagcctgaccaacatggagaaaccccatctctactaaaactacaaaattagctgggcgtgg<br>tggcgcatgactgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaatccaggaggcggaggttgcggtgagccgagattgtgccattgc<br>actccagcctgggcaacaataatgaaattttgtctcaaaaaaaaaacaaaaaaaacaaaaaaaacaaaaaaaacgtgtatttgtggccagtcacagtggc<br>tcatgcctgtaatcccagcactttgagagcccgaggtg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	3290	956	NA	intergenic
0	chr1	210537777	210539239	3000014	0	-	PPP2R5A; H1_E_271; RIP_SVA_chr1_208_01	GTTCATTCACTGGAAGCACAA	GGGCAAGTAAGCCAGTATTGAA	OTHER	SVA	SVA_E	ttgaggagatgacatctaactctcatttcagcttgtctggaagttttagtggaagaataaaatcagtcaagtggtagattagcccaattgacttttatat<br>cccagtctctgttatcctgacctaacttttttcctctatcaaattgagaaaaaatgatcagaaagatagtactatgctaatgtggaagagtattttaaaa<br>agttttcaaaaactttgtgtaaaaggggaccagaatatacccaacatttccaaaagaagcaaaaacaagtagattctaatcagttcttgataatctacaa<br>tttcttcaagctaattacagatcattataactttgaggggtgactccaaaatctaactgtgacacaaatgtgctgaatgatt<font color="green"><u>AACAATTCACTTCATCTT<br></u></font><font color="red">AGTGAGGAGCCCCTCCGTCTGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGC<br>CCCCAGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCC<br>GTCCGGGAGGGAGGCGGGGGGGGGGGGTGTCGGCCAGCCGCCCCGGCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCC<br>CCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAACCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCC<br>CCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCC<br>GGGAGGGAGGTGGGGGGGGGTCAGCACCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCC<br>GGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGAACAGC<br>CCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCC<br>GTCCGGGAGGGCGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCCGGGCCGCCCCTACTGGGAAGCGAG<br>GAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGC<br>GGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCTGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAA<br>ATTCTTCTGCCTTGGGATCCTGTTGATCTGTGGACCTTATCCCCAACCCTGTGCTCTCTGAGACATGTGCTGTGTCCACTCAGGGTTAGATGGATTAAGG<br>GCGGTGCAAGATGTGCTTTGTTGAACAGATGCTTGAGGGCAGCATGCTCGTTGAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACGC<br>TGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCA<br>AATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAATAAAAAAGAAAAAAAAAAAAA</font><font color="green"><u>AACAATTCACTTCATCTT</u></font>gtttctcagtactcattca<br>taaaacaaatgctctcatatttttttgagaaaaactttaggttacctaaaaatgagaggacagtgtttcaaagaagatcaatgaagcatttttatatcag<br>aagaatttaagaaacaaagatcccttgctttaacaggtcttagaaaaatctacgttcaatactggcttacttgcccagcacctatagcctaagactatac<br>tacagtctaaaggtctaaagactacaggctctaggcttagtcttagtctttagttagattaaagactatagtctaaagacttactcattcagcttctaca<br>atttccactcacttttcaccttatgcaaatctcatttcaagttatcaaaaagaaacgtattgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	2115	709	NA	intron:PPP2R5A:NM:006243:1/13
0	chr20	42109555	42109945	3000015	0	+	C20orf100; RIP_SVA_chr20_042_01	NA	NA	OTHER	SVA	SVA_F	aaatacttatatgatgtagctaaaattctccctgggagaaaaatcatagttacagtgcagagtttctcaacctcagcactattgacattttgggatgcat<br>aattctttgtttagtggggacatccctggccactacccagcagatgccagtagcttcccaccctccagttgtcagaaccaaaaatgtcttcagagaaatg<br>ccccctgcatggtaaaattgctcatctcaactcctgccctagatgtttctgttactaaaaaagaaaatgtgaaaatagcttaatttgaaaacctatgtaa<br>aaaacaacatatgctacctcaagtcaacattaatagagaagaaagcagaatttaatgaattatcatgaaagttgtcaaatttttttaacatctgcac<font color="green"><u>TAA<br></u></font><font color="red">GAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATT<br>AAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAA<br>ACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCT<br>GCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAATA</font><font color="green"><u>TAA</u></font>gagctg<br>gttctttggctagacagttgaaatatataaacttttggccgggtgtggtggctcatgcctgtaatctcagcattttgggaggctgagacgggtggatcac<br>ttgaggtcaggagtttgagaccagcttggccaacatggcaaaaacccatctctcctaaaaatacaaaaagtagccgggtgtggtgacatgcacctgtaat<br>tccagctactcaggaggctgaggcagaaaaattgcttgaaccctggaggtggaggcagaggttgtggtgagccgagatagcatcactgcactccagtgtg<br>ggcaacagagcaagactccgtcacaaaaaaataaataaaataaattttgagaaggaaaattttaaaaagcaacgtgtattcacaatattac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TOX2:NM:032883:4/10	
0	chr20	2751163	2754409	3000016	0	+	CPX-1; RIP_SVA_chr20_002_01	GGTGAAGATTCAGGTCAGGGTAG	GATGTGGTCTCTTGGTTTAGAGAGG	OTHER	SVA	SVA_E	taagatgtcttagggcagtaggcagagcctgggggcggggattcctggaaagatagggctttccagggagaactggagtgtgtgcagtctctccttcact<br>ccagcactgcatgtgccccggcaaagtgcacctccacccccaatcccccaaccccccagggcggagatttcaatgtggtaatgaggtgaagattcaggtc<br>agggtagcactgctgagctcccttctcatcttgtggcttgtttgtggttactggcttccagcctccattttttaaagcaagcacagctgtgaacactggt<br>taatttcacaggttttggggcttgctgaaagacttggggttactctgcagtgacaattccctaccttgaaaatattttccatctt<font color="green"><u>AAAAGAACTTGATTT<br></u></font><font color="red">GCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCT<br>CCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGT<br>CTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCC<br>TCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCC<br>CTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTC<br>CCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCGTCTCCCTCCACGGTCTCCCTCTGATGCCGAG<br>CCAAAGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGC<br>CGCCACACCTGACTGGTTTTCGGTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGCTCTCCAGCTCCTAACCGCGAGTGATCTGCCAG<br>CCTCGGCATCCTGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAGTGGTGTCCAGGCTGGAGTGCAGTGGCGTGATCTCCGCTCGCTA<br>CAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTG<br>CTTGGCCACCCATCGTCTGGGATATGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAA<br>GCGAGGAGCGCCTCTTCCCGGCTGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCA<br>CCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCCGCCGCTCCGTCTGAGAAGTGAGGA<br>AACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCA<br>CCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAA<br>GTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCG<br>CCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAACCCCCCGCCCGGCCAG<br>CCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGA<br>AGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGG<br>GGGGTCAGCCCCCCGCCCGGCCAGCCGCCTCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGG<br>GGGTCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAG<br>CCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCACCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGC<br>CGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAAACCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGG<br>GGGGGGTCAGCACCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGC<br>GCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGAACAGCCCCCCGCCCGGCCA<br>GCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGCGG<br>TGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCCGGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCC<br>GGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGA<br>AAAAATTGAGAAATCGGATGGTTGCTGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTG<br>GGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAGACATGTGCTGTGTCCACTCAGGGTTAGATGGATTAAGGGCGGTGCAAGATGTG<br>CTTTGTTGAACAGATGCTTGAGGGCAGCATGCTCGTTGAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACGCTGCGGAAGGCCGCAG<br>GGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGA<br>GAAACACCCAAGAATGATCAATAAAAATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAACTTGATTT</u></font>aacatctgttggttctgtcatattttccaggttgcgtc<br>ttcaaatgtcttgcccccaaaataccagtttttaaaattaatacgtgatattgtatccttgcaaaatatttgtaacatgtatgaaagttatgaacctctc<br>taaaccaagagaccacatcaatctaaaagacagatgttatcaggttagggcctcttcctgtgtgctcctcatcttactgtgcaagctgggattcctggac<br>aatggcaaattgaactgctcttcacagatatctttgacttgatattgatttaaaatgaactgcttgcttctaagtttccaccattaagaattatgtacat<br>tgttgtagatttctggtagttaacttttattcagttaaagaaattcc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr22	25498077	25499792	3000017	0	-	AK026502; RIP_SVA_chr22_025_01	NA	NA	OTHER	SVA	SVA_F	aactatacttgcccaactgcgttgtcagtagagttccagttcagtttccccattgtgaagtactcatgtgagacctggaagacaggagagaataagaaag<br>cattattgttctactagcagcgggactttcgcagaaagcagacatatggtgttttccagcatcttctggacattttctcttaagtaacccacattggtgc<br>tgtaggcagctgaggacctcagtagtagtgctctgcaggaatccctgcacaccctgctatcctaaatgctgcagcattgcattccctgtattaaatctct<br>tcctgattgaaatacctagaggggtttctgttttccttatgcatcctgatgaatacagacagtcagaacacatggcttctaatttcattt<font color="green"><u>AGAGGTTAAG<br></u></font><font color="red">CCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGA<br>GGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCA<br>CCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCCGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGA<br>GCGTCTCCGCCCAGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCC<br>CCCCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCATGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCC<br>CCTGCCCGGCCAGCCGCCCCGTCCAGGAGGTGAGGGGCGCCTCTGCCCGCCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGT<br>CTGGGAGGGAGATGGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCTGCCCCGT<br>CTGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCC<br>GGGAGGGAGGTGGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGG<br>AGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAAGGAGGTGGGGGGGGTC<br>AGCCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTG<br>CCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAGCAGCTCATTGAGAACGGGCCAGGATGACA<br>ATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACT<br>TTTCATTTTGTTCTGCACTAAGAAAGATTCTTCTGCCTTGGGATCCTATTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGT<br>CCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAAT<br>CTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCT<br>CCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAAAATAAATAAATAAATAAAATAAAATAAAATA<br>AAATAAAATAAAAAAA</font><font color="green"><u>AGAGGTTAAG</u></font>ggtgggctgggctggtaatgggtacccactgataaaagcaacaataatagcaactcttactttttttctgtatg<br>tgcaaggcactatgatgcgaggcaatttacccaacctgtctcatttatgagacgaccctgtttttgtttgtttgtttttgagatggagttgcccaggctg<br>gagtgcagttgcgcgatctcagctcactgcagcatccgcctcctgggttcaagtgattctcctgcctcagcctcccaagtagctgggataataggcgtct<br>gccaccatgcccggctaatcttttgtgtttttagtagagacagggtttcaccatgttggccagactggtcttgaactcctgacctcaggtgagccatcca<br>ccttggcctccaaaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr22	22525950	22528505	3000018	0	+	SLC2A11; RIP_SVA_chr22_022_01	CCGTGTTAGCCAGGATGGTCTC	CTTGGGGTAGACGCAACTTGGTC	OTHER	SVA	SVA_E	aactgtcctagcgccatttattagcccgtcacttcccacttatttattattattattttttgagacggagtctctctgtcgcccagacgggagtgcagtg<br>gcacgaccttggctcactgcaagctccgcctcccgggttcacgccattctctcgcctcagcctcccgagtagctgggactacaggagcgtgccgccacgc<br>ccggctaattttttgtatttttaatagagacagggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatctgcctgcctcggcctccc<br>aaagtgctgggattacaggcgtgagccaccgcacccggccacttcccacttatttcttaagggggaaaaggcaatggttgtttt<font color="green"><u>GAAAAAAAATTAACCT<br></u></font><font color="red">GCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCCCCTCCCCCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCC<br>GAGCCAAGGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCG<br>CACCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCGCGAGTGATCCGC<br>CAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCG<br>CTGCAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCGGAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTATGGGAAGTGAGGAGCGTCTCTG<br>CTTGGCCACCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTGGGAA<br>GCGAGGAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCG<br>CCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAGCCCTGTCTGGGAGGTGGGGAGCGTCTCTGCCCGGCTGCTCCGTCTGAGAAGTGAGGA<br>AACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCAGCAGCCA<br>CCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCTGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAA<br>GTGAGGAGCCCCTCTGCCCGGCCAGACGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGG<br>GGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCT<br>CTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGTCATCCCCCCACCTGGCCAGCC<br>GCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGC<br>CCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCC<br>CCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGAAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGT<br>GGGGGGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTTCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCT<br>CTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGACAGCCCCCCGCCCAGCCAGCCG<br>CCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGTCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGTGGG<br>GGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCC<br>ACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAA<br>ATTGAGAAATCGGATGGTTGCCGGGTCTCTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGAT<br>CCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTT<br>GTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCAAGGCCGC<br>AGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGC<br>GAGAAACACCCAAGAATGATCAATAAAAAAAAAATAAATAAATTAAAAAAAAAAAA</font><font color="green"><u>GAAAAAAATTAACCT</u></font>tcaaaataaaatatcagcagttgaaacta<br>acaatgtattaataacaataatattatgaccaagttgcgtctaccccaagaattcaagaatggtttaccattagaaagtttattgatgtaactgatctca<br>ttaacagattaaaggagaatacccatatgatcatcttaatagatgcacgaaaagcatgcaataaaatacctatttattataactgctaatattttgtgtt<br>tttccttaaaaatgcagtgtttttaggaattaaagttcagagcagcaaaagtcaaacaaaaaccaagtctgagcaatagagctactacagtgcccatcac<br>agtgtctgctcaggtgacttcttaaggtcatgtccagctctatgtttctgtgacc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	promoter:SLC2A11:NM:001024938
0	chr22	39470078	39472580	3000019	0	-	GPR24; RIP_SVA_chr22_039_01	GACAGGCTGGTCTCGAACTCCTG	GAATCTATGTCTTCTGGGTTGCAG	OTHER	SVA	SVA_E	atgtatcacacccagcgagtcatgagtatacttcagtcacacatacatacctgcacccaggcaattgtttaaaagcattttcttctttctttccttacct<br>gtagtttccagactagctgataaatgacctaaaatgttatcacaagttgcagaatgtgacccttacccattatcttcatgttcctagaatttgtgataca<br>aaaaaaaaaatgtatagccaatcaatagcttatgttattttaatgaaccagtgtaagaactaccccttcttttttcctttaaaaacccatgtatagctgc<br>tgctaattgaagcatatattcagggcaacttgaatctatgtcttctgggttgcagtcttcaaatttggcccaaacaaaccctactt<font color="green"><u>AAAACAAACAAACA<br></u></font><font color="red">CCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCT<br>CTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCC<br>TCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGG<br>CTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTT<br>GGTGGAGATGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGAT<br>GGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCC<br>CAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGGAGCCCC<br>TCTGCCTGGCTGCCCAGTGTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATCCCATCT<br>AGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTG<br>GGCCGCAACCCTGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGT<br>GAGGAGCCCCTCCGTCTGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCC<br>CCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTC<br>CAGGAGGGAGGTGGGGGGGTCAACCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGG<br>GAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCAGGAGGGAGGTGGGGGGGTCAGCC<br>CCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCC<br>CTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCC<br>TGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCG<br>GGAGGGAGGTGGGGGGAACAGTCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCC<br>CCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGCGGTGGGGGGGTCAGCCCCCCTCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCCGG<br>GCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGG<br>CGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCGGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTC<br>ATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCAC<br>TCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTA<br>AGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCAC<br>TATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAATAAAAAATAAAAAATAAAAAATAAAAATAAAAAAAAA<br>AAA</font><font color="green"><u>AAAACAAACAAACA</u></font>aacaaaaaaaacggggctgggtgcagtggctcaggcctataatcctagcactttgggaggccgaggtgggtggatcgcctgag<br>gtcaggagttcgagaccagcctgtccaacatagccaaaccctgtctctactaaaactacaacattagctgggcgtggtggtggtgggtgcctgtaatctc<br>cagctcaggcaggagaatcgcttgaaccctgggggcggaggttgtggtgagcggagatcatggccattgcacttcagcctgggcgtaagagcaaaactct<br>gtctcaggaagaaaacaacaaccacaacaaaaaatgctacttatattaattttgcctctgtttgtttgtttgtttctctctctctctctttcttcttatt<br>att	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr2	170349765	170352197	3000020	0	-	SSB; RIP_SVA_chr2_170_01	NA	NA	OTHER	SVA	SVA_F	gtgacacaagtattttgagtttctgtctaaaaagaagttgaattgagaataaaccactataaatgtaatttgagcaggcatttttaaacattttaataag<br>atgtgaagaaattacagttcctagtttaagaactgaaaaaaacagataaaattaatagaatatgaagctaaagtcataaacatgaatgacaaaatcagtg<br>attattctgtattcaagaagcaaattataagagagaagttttcaaatcataccaatatcagtgattcattaagaataaataaatttcaaaaaagaaatga<br>ataagcttcttggatagtgtataatccaaataacaaagtggagcaattcataagaatatattggaaaaaattaaaattttttattattt<font color="green"><u>GAAAATAATGA<br></u></font><font color="red">CCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCCCTCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCTCTCCCTCTCCCCACGGTCTC<br>CCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGA<br>TTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCGAGTGATCCGCC<br>AACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCAC<br>TACAACCTCCACCTCCCAGCCACCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTC<br>TGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCCAGCCGCCCAGTCTGGGAAGTGAGCAGCGTCTCCGCCCGGCCGCCATCCCATCTAGG<br>AAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCC<br>CACCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAG<br>GAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTTCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCAGCAGC<br>CACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGCCCCATC<br>CGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCATGCCCCCCGCCCGGCCAGCCGCCCGGTCCG<br>GGAGGTGATGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAG<br>CCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCC<br>CGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGTGTCGGCCCCCCGCCCGGCCAGCCGCCCCG<br>TCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCTTTTGCCCGGCCGCCCCTACTGGGAAGTGA<br>GGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGCGAGGGAGGTCGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGG<br>TCAGCCCCCCTGCCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAG<br>CCGCCCCATCCGCGAGGGAGGTGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCC<br>AGCCGCCCCGTCCGGGAGGTGAGGGGCACCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTG<br>CCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCC<br>GTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACC<br>CCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCA<br>GCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGA<br>CCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAA<br>AAATAAATTTAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATAATGA</u></font>gattggccgggtgtggtggctcacacctgtaatcccagcactttgggaggccgagg<br>caggcagatcatgagttcaagaccagcctggccaatatggcgaaaccccgtctctactaaaaaaaaatacaaaaattagctgggagaggtggtgcccacc<br>tgtagtctgagctactcgggaggctgaggcagaagaatcacttgaaccagggaggtggaggttgcagtgacctgaggtcacaccattgcactccagcctg<br>ggtgacagagcaaggctccatttcaaaaaaaaaaaaaaaaaaagaaaacaatgacatcaacaaatacaacctaaaatcataaaatcataatacacctttt<br>ttttttttttttttttttgagacggagtctcgc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	216798189	216800743	3000021	0	-	XRCC5; H2_E_245; RIP_SVA_chr2_216_01	AAACCAACAACTTTGCATAGGG	AGGGAAGGTGTGGAAAAAGATT	OTHER	SVA	SVA_E	ggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaagaaagaaaga<br>aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaaagcttctgcatagcaaaggaaacaacagagtgaagagatgacttaataaatac<br>tcaaggtgatggataccctaaatatcctgacttgatcattctacactctatgcatgtaacaaaacaagtgtaccccataaatacataaaatatcatatca<br>attttaaaaaccaacaactttgcatagggcatgacgcatcacctctgtgaactgatgagtccaagcatcttgccatgcatctgcttt<font color="green"><u>AAGAACACATGGC<br></u></font><font color="red">GCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCC<br>CGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCT<br>CCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCC<br>TGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTGGTGGAGATGGGGTT<br>TCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACT<br>CAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGAGCCGAGATT<br>GCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGGAGCCCCTCTGCCTGGCTGCCC<br>AGTGTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCG<br>TCTCTGCCCGGCTGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTC<br>TGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGT<br>CTGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCG<br>CCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGG<br>GGGGGGGGGGTTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGC<br>CCCGCCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCC<br>CGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAAGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCC<br>GTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGG<br>TCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTTCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCT<br>GCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCTTCCGGCCGGCCGCC<br>CCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGG<br>GACAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACG<br>ACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGTGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAGAATT<br>GAGAAATCGGATGGTTACCGGGTCTGTGTGGATGGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAGGAAAAATTCTTCTGCCTTGGGATCCT<br>GTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTT<br>AAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTTAAGTACCCAGGGACACAAACACTGTGGAAGGCCGCAGGGTCCT<br>CTGCCTAGGAAAACCGGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACA<br>CCCAAGAATGATCAATAAAAATAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACACATGGC</u></font>atgggctgggcgcggtggctcacacttgtaat<br>cctagcactttgggaggcctaggtgggtggatcacgaggtcaggagttcgagaccatcctggccaaggcggtgaaaccccatctctactaaaaatacaaa<br>aaaactagccgggtgtggtggcgagcacctgtaatcccagctactcaggaggctagggcagagaattgcttgaacccaggaggcggatgttgctgtgagc<br>cgagactgtgccattacactccagcctgggggacagagcgagactccatctcaaaaaaaaaaaaaagaatacatgccatgtgttaccctaacttcatgag<br>tcaggtgggtgccaggggtaccagagagccaggctatctctagcaccatctaaga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	3109	551	NA	intergenic
0	chr2	201854904	201857685	3000022	0	-	CASP8; RIP_SVA_chr2_201_01	GAATCCAGCTACGAATATAGAGGG	GATGAAGCAGTCCATGTTACTGTGG	OTHER	SVA	SVA_E	acctttctggtagttatccccctgacaagcctgaataaaaaacactttgggttttccagcaagggaagggcacttcaaaccagtgaactgagatgtcagc<br>tcatagatgggggcctcctgtccatcagtgccatagatgatgcccttgtctccatgggagaggatacagcagatgaagcagtccatgttactgtggtcca<br>tgagttggtagattttcaaaatctcatagatttgctctactgtgcagtcatcgtggggcttgatctcaaaatgaagctcttcaaaggtcgtggtcaaagc<br>ccctgaaaagtgaaatttgaacagtcacgttataccacagtaattcacagaccacagctggagagcacagtgggcataacattgatagat<font color="green"><u>AAGAATTTGA<br></u></font><font color="red">CCCCTCTCCCTCTCCCTCTCCCCGTCTCCCTCTCCCTCTCCCTCTCCCCGTCTCCCTCTCCCTCTCATGCCGAGCCAAAGCTGGACGGTACTGCTGCCAT<br>CTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTT<br>TTTTTTGGTGGAGATGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATT<br>GCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTTGCTACAACCACCTCCCAGCCGCCTGCCTTG<br>GCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACGCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGG<br>AGCCCCTCTGCCTGGCTGCCCAGTGTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATC<br>CCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCT<br>CTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTG<br>AGAAGTGAGGAGCCCCTCCGTCTGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTC<br>AGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGC<br>CCCGTCCGGGAGGGAGGCGGGGGGGGGTGGTCGGCCATCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACC<br>CCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCG<br>GCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAACCCCCCGCCCGGCCAGCCGCCCAGT<br>CCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAG<br>CCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGTTCAACCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCC<br>CCCGCCTGGCCAGCCGCCCCGTCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGC<br>CCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCC<br>GGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCG<br>GGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGC<br>CCCCCTTCCGGCCGGCTGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCGGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCA<br>TCCGGGAGGGAGGTGGGGGGAACAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGG<br>AGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGCGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCGCTTCTG<br>CCGGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACA<br>ATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACT<br>TTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGT<br>CCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAAT<br>CTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCT<br>CCACTATTGTCCTGTGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTTGA</u></font>accagaaa<br>ttcaagagcaaaaccctctatattcgtagctggattctgcaggcttctaatatttattgccaccagctaaaaacattctcaaaccctgaagcaaatgaga<br>aaggagagagtgttattgttggtctgttttctctagtaaactagtttacaagatgggtaagctatcatttaggcttactactgaaccaattttaaaaatg<br>attatattatttacataatcagaaaaaaacaaaacaatttttgaataaaagatccaacttattttatcctaaaccttctcaaaattatttatgtatagca<br>aaataaaagatatgaattaataagatagaactagaagaccttatacaaaaggttatcccctctctatccctccccattacct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:CASP8:NM:001080124:7/9
0	chr3	195602462	195603210	3000023	0	+	AFURS1; RIP_SVA_chr3_195_01	GTCTATAGGCAAAACGTGTCTACGTG	GCGATACCTGGCAGAGGCAGTGG	OTHER	SVA	SVA_E	caatccgcccgcctcggcctcccaaactgctgggattacaggcatgagccaccacgcccggccgctcacatgttcagtttaactggggaaagtcaaactg<br>ctctccaaagtggttgtgttggtctacgatgacacctgccatttgtgagagttcctgtgcttcctctctgcccacacgtggcacttcctgctttttgcca<br>tttctatgaaagatatctcagcatgattttaacttttcctttccctgtttaatgatgaacttgaacaccttttcacataattaaggcccacttgtgcttc<br>atttgagaaagctgggtttccttttgcccatttgtctataggcaaaacgtgtctacgtgtcttttgaacacactgataatgctgtctgcatt<font color="green"><u>AAGACTTC<br></u></font><font color="red">CGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCC<br>TACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCATCCGGGAGGTGGGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTC<br>TGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCTAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCAGTTTTGTGGAATAGAAAGGCGGGAAGGGT<br>GGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTG<br>CCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAG<br>ATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGC<br>CGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTGTTGTCCTATGACCCTGCCAAATCCCCCTC<br>TGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTTC</u></font>tatccttcaagacaccataaaaaaggggaaaagataaaccaca<br>aactaaagatatttgtaacacctatagctgacaaaggcttaatgtcagaagatataaagaatcatgggatccaatcccctttgatgcagcctaatgcagt<br>cagagcccagtaaaggctgggttgactgaaattaccttcaaagtcacgcagccctggaccacagggaagagccactgcctctgccaggtatcgcgggagg<br>tctttcagttccgatcaaggaatgcaactccagagccctgaactgctacactggtgacctggtaagtccgtcatgcataggcacatcgagtgaaagcctc<br>cccgcccccttgcccatgaaattgccagggagccaacatgacagactgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr3	147296330	147298305	3000024	0	+	PLOD2; RIP_SVA_chr3_147_01	GAGGATACGGAGAAATAGGAACG	GTGTTAGTTTGGTGAGGATGATGG	OTHER	SVA	SVA_E	aaaaaaagctcatcatcactggtcatcagagaaatgcaaatcaaaaccacaatgagataccatctcatgccagttagaatggcaatcgctaaagtctgga<br>aataacggatgctggtgaggatacggagaaataggaacgcttttacgctgctggtgggagtgtaaattatttcaaccattgtggaagagagtgtagtgat<br>tcctcaaggatctagaaccagaaataccatttgacccagtaatctcattacagggtatatatccaaaggattctaagtcattctactataaagacatatg<br>cacatgtatgtttattgcagcactatttacaatagcaaagacttggaaccaacccaaatgcccatcaatgatagactggat<font color="green"><u>AAAGAAAATGTGGCATATA<br></u></font><font color="red">CCCTCTCCCCTCTCCCCTCTCCCCTCTCCCCTCTCCCCTCTCCCCCCTCCCCCCTCTCCCTCCACAGTCTCCCTCTGATGCCGAGCCAAAGCTGGACGGT<br>ACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTG<br>GTTTTCGTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACTGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGG<br>TGCCGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCT<br>GCCTGCCTTGGCCTCCCAAAAAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTG<br>GGATATGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCCTCTTCCC<br>CGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTG<br>AGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACC<br>GCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCTGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGAAGCCACCCCGTCCGGGAGGGAGGT<br>GGGGGGGGTCAGCCCCCCGCCCAGCCAGCCACCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCC<br>GGCCAGCTGCCCCGTCCGGGAGGGAGGTGGGGGGGGGGAGTCGGCCAGCCGCCCCGTCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGA<br>AGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGGCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCT<br>CCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCTGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCA<br>GCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCGGGCCGCCCCTACTGGG<br>AAGTGAGGAGCCCCTCTGCCCAGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATA<br>GAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCTGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACT<br>AAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGA<br>TTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACAC<br>AAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACC<br>CTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAATAATAATAATAATAATAATAAAA</font><font color="green"><u>AAAGAAAATGTGGCATATA</u></font>tacac<br>catgaaatactatgcagccatgaaaaagaatgagttcatgtcctttgcagagacaaggatgaagctggaaaccatcatcctcaccaaactaacacagaaa<br>cgggaaacaaacactgcatgttctcactcataagtgggagctgaacaatgagaactcgtggacacagggaggggaacatcacacactggagcctgttgag<br>gggtggagggaaaggggagggagggcattaggacaaatacataatgcatgcagagttaaaaacctagatgacggattgacaggtgcagcaaaccaccaca<br>gcacatgcatacctatgtacaacaaacctgcacgttcagcacatgtatccaagaacttaaagtaaaattttaaaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:PLOD2:NM:182943:7/20
0	chr5	137050478	137051785	3000025	0	+	KLHL3; H5_E_128; RIP_SVA_chr5_137_01	CCTTGTAGTTTGTTGGCATGAA	GCTGAGAGTCTCCTCCCTGTTA	OTHER	SVA	SVA_E	cctagttctgatctggaaggtctccttgtagtttgttggcatgaaataccttctaactcaaggcctgggtccagggagacctgtgaccacagagaccaat<br>gctttcccttgtgtgtgaccctagtgggtgcctgcacccctgcacttacagtagagtgaggtcacaggtctgtctcaagaggcagcaatggtagagaacc<br>ccaggctccatctaaagtcaggggtacaaggaaaaaagcaggcccacgtcagtgggtgggttcaagggagtaagcatggataatcattttctacttctcc<br>tctaaatactgcacaatctaaccttcattcccttcttctaacatctttgcatcatggccttatcttctgcattatactacttta<font color="green"><u>AAAATATTACCTCCCT<br></u></font><font color="red">GAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCG<br>CCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGC<br>CCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCTGCCC<br>CTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGCGGGGGGGGGTCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGG<br>GGGGGTCAGCCCCCCGCCCGGCTGGCTGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGC<br>GAGCCGCCCCGTCCGGGAGGGTGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACT<br>GGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAG<br>GGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGG<br>CCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGGAAAAATTGAGAAATCGGATGGTTGCCAGGTCTGTGTGGATAGAAGTAGA<br>CATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAAC<br>ATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCAC<br>CACTCCCTAATCTTAAGTACCCAGGGACACAAACACTTCGGAAGGCCGCAGGGACCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGC<br>TGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAATAAAATAAAATAAAATAA<br>AATAAAAT</font><font color="green"><u>AAAATATTACCTCCCT</u></font>agtgtgcagagcatagtgggctgctgagaaagccacccaggagaggatcacaggcaccacagaaggcctgcataac<br>agggaggagactctcagcctgaagatcatgctgacccagccaggaaaagtaggagggcctgctcactcattcagtgagggaacaggctccatgtgtctgg<br>gaggaagtcacccgacagggaagagaagaagacacccacatggcgcttcctctatcccaagatgatgacataccctgtgtctagcggacagctggatgtc<br>tgtctacactgtctggttgttgggatttggtgactacattgcacaggcttccaggaacatgctttcaatggaaaatgccaactctagccacatgcactcc<br>tcagttac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	1795	470	NA	intron:KLHL3:NM:017415:5/15
0	chr5	75502352	75504657	3000026	0	+	RAP1B; RIP_SVA_chr5_075_01	CACACGACTATAAACATTGTTCCC	CCAAAGAGCTCCTATATAGACTACTCC	OTHER	SVA	SVA_F	acgttacacatgtgaaacaatcactaacaggcaaaaatactaaacctgtatatttggtattgcaaatacacttatgcatgagcaagcaagggattcacag<br>tgagaatctacagctgcagaagcctgaaaatgatttacaaaaattgttaaatcattaaaaaattgtttgaaaatatacacttcttgttgtagacccccac<br>tgtacacacgactataaacattgttccctatgtaaacaaaaaaaggaaacatataataagagatttgaaaagtctggacatttccttcccaacagatatt<br>aaaggcaacgtctttaatctaagacattatactgaaaggactatcatattttaaagacaagatcactgtctccacaggtttttt<font color="green"><u>AAAAATTAAAAAAACT<br></u></font><font color="red">GAGAAGGCTCGAAGGCGCCGCGGGCTGGGGTCGGTGGCTTAGGGAGCCCGTCCGGCCATGGTGGCCGCGGGTGGTGGTTGGCGCGGCTGCGCTGCGGCCC<br>GGGGCAGTGCGGAGCCGGGACAGTCGCGGCGCTGACGCCCGCGGGCCCCAGCTGCAGCTATGAAGCGGAGCCGCTGCCGCGACCGACCGCAGCCGCCGCC<br>GCCCGACCGCCGGGAGGATGGAGTTCAGCGGGCAGCGGAGCTGTCTCAGTCTTTGCCGCCGCGCCGGCGAGCGCCGCCCGGGAGGCAGCGGCTGGAGGAG<br>CGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTGCCACCCCGTCTGG<br>GAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGG<br>CCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGT<br>GGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCTGC<br>CCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAG<br>CGTCTCCGCCGGGCAGCCACCCCGTCCAGGAGAGAGGTGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAG<br>CCCCCCCGCCCGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGC<br>CCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCC<br>GTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTAGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCG<br>TCCGGGAGGGAGGTGGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAG<br>GAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGAGAGGTGAGGGGCGCCTCT<br>GCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGC<br>CCCGTCCGGGAGGGAGGTGGGGGGGGGGGTCAGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGG<br>GAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAG<br>GGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGG<br>CCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGA<br>CATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAAC<br>ATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCAC<br>CAATCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCTCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGC<br>TGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAATACAA<br>AAAAAA</font><font color="green"><u>AAAAATTAAAAAAACT</u></font>atatagctgtgttaatcaaagcgcttattttgtacaataataatgaccttgaatttcttaaaaaaaattacaataagc<br>tacaagtatcaaagaagcgaagttatctggagtagtctatataggagctctttggactttcttttattatgctaaaatagtggtgcttttaggatttaca<br>ttattgtactctccaatacaaagtatggggcatgttaaagtatacagtacaccattttcatacatgtacaacattggtggatgaagaatgtctcttagca<br>gtaatactggatgtagcctctggttttaccagctgcatactctaggactattatataagtaaaaatctctcttgtgatactggaaagtgattagaatgtg<br>caaact	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:SV2C:NM:014979:2/13
0	chr6	29793468	29796059	3000027	0	+	HLA-F; RIP_SVA_chr6_029_01	GTCATTTGGTTTTAAGAGGTAAGAGG	GGTTGAATAACTGGGGTCAGGTG	OTHER	SVA	SVA_E	agctcactgcagcctcgacctcctaggctcatgtgatcttcccacctcagctgtctgagtagctgggagtacagacatgcaccaccatgcctggctaaaa<br>tttttgtatttttggtagagacaagggttttgccatgctgcctaggctgatctcgaactcatgaaatcaagctctctgcctgactccatctccaaaagtg<br>ctgggattacaggcatgagccaccaccacacccaacctaaattaattataaaatattaaacatgtcatttggttttaagaggtaagaggaatttccatgg<br>ctaaataggatgtattttattatcattcacaattattgctttatttgaacttcaatttccacctgtgtcccaattaaactc<font color="green"><u>AAAAGAAAGACCCAAGCCT<br></u></font><font color="red">CCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTC<br>TCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCC<br>TCTCCCTCTCCCGTCTCCCTCTCCCTCTCATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGC<br>CTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTGGTGGAGATGGGGTTTCGCTGTGTTGGCCGGG<br>CTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCC<br>CAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAGGAGCCGAGATTGCAGCCTCTGCCCGGCC<br>GCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGGAGCCCCTCTGCCTGGCTGCCCAGTGTGGAAAGTGGGGA<br>GCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCC<br>ATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCGGCCCTGTCTGGGAGGTGAGGAGTGT<br>CTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCTGGCAACCACCCCGTC<br>TGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGA<br>GGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGGTCGGCC<br>AGCCGCCCCGGCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAG<br>GTGGGGGGGTCAACCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGGGGAG<br>GGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGG<br>GGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCC<br>AGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAG<br>CCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTG<br>GGGGGAACAGTCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGG<br>CCAGCCGCCCCGTCCGGGAGGGCGGTGGGGGGGTCAGCCCCCCTCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCCGGGCCGCCCCTAC<br>TGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGG<br>AATAGAAGGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCGGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTG<br>TACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAGA<br>TGGATTGAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGG<br>ACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTAT<br>GACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAATAAAAAATAAAAAATAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAGAAAGACCCAAGCCT</u></font>tgctaggctgattctatcatcccccccatgatagacgtgtaaccttggtcattcacctgaccccagttattcaaccaaca<br>ataatgtaagtcctgccttgaagggatttttgcatatataattaaggtcctaaatcaattgactttaagacagggattatccctggtcgggctgtcctca<br>tctggcgagcccctgaaaggactgggttcttcctgatcagagagattcacagtgtgagagggattcagtgtgagggggttcctccaatgtggattctaaa<br>aatgaaggggctgtgtggcaaagaatgctggtgggcaccaggaattgagagcagcctctctctaccttgacagtaggcaaggaacaggaaccttagtcct<br>a	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr6	30007762	30009505	3000028	0	+	HLA-G; RIP_SVA_chr6_030_01	NA	NA	OTHER	SVA	SVA_D	aagcatcattaaagtaaaaacagaaaaatttcgggccttatggtgtatatgttctagatgcaagcttgtccaacccgcagctcgtgggctgcatgtggcc<br>caggacaattttgaatgtgaggacttttttgcttatctgtggtgcacctgagtcccggagtgagtgcacccacctccctcagggtcaggagtgaatgctt<br>taggaaccctccttttcagtgacctgaaaaagatagagggcacacttactgtgataacccagagtatcagtcaagggggcttgaccttcaaggagttatg<br>ggaaagcttaataaagggtggtgtcccagggtcagaaaagatgggcagacagcaagagcactgcttgatatctatgataagcatgt<font color="green"><u>AAGAATTGAGGAGC<br></u></font><font color="red">CCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTGCCTCTCCCTCTCCCTCTGCCACGGTCTCCCTCTCCCTCTCTTTCCACGGTCTCCCTCT<br>GATGCCGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCCGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCA<br>GGCGCGCGCCGCCACGCCTGACTGGTTTTCATATTTTTTTGGTGGAGAAGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGCGA<br>TCCGCCAGCCTCGGCCTCCCGAGGTGCCAGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCG<br>GCTCACTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCAAGATTGCAGCCTCTGCCCGGCCGCCACCCTGTCTGGGATGTGAGGAG<br>CCCCTCTGCCTGACTGCCCAGTCTGGAAAGTGAGGAGCATCTCTGCCTGGCCGCCATCCCATCTAGGAAGTGAGGAGCGTTTCTGCCCGGCCGCCCATCA<br>TCTGAGATGTGGGGAGTGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGTGACCCCGTCTGGGAGGTGAGGAGCGTCTCT<br>GCCCGGCCGCCCTGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCACTCCGGG<br>AGGGAGTTGGGGGGTCAGCCCCCCGCCCAGCCAGCCTCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCT<br>CTGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTTGGGGGGTCAGCCCCCCGCCCGGCCAGCCTCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCC<br>GCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCTCCATCC<br>GGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCAGCCAGCCACCCCGTCCGGGAGGTGAGGGGCACCTCTGCCCGGCTGCCCCTACTGGGAAGTGAGGAGC<br>CCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTACCCAACAGCTCATTGAGAACGGGCCATGATGACAATGGCGGTTTAGTGGAATAGAAAGGGGGGA<br>AAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCCTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGGAAAATTC<br>TTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGT<br>GCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGG<br>AAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCC<br>CCCTCTGTGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAA</font><font color="green"><u>AAGAATTGAGGAGC</u></font>aagcttcacattcagaatccagtggctgaggaagtatccata<br>tccctaagagaaagaaccttgggacaccatgactgttacatgctgggacaattccatcagcccttctgcaaaggagcctatagccatttaatcaggagat<br>gggataagtgttaacattgggtgtgagctaacattgctgcccagattcccacagcaccattatgtccctatcacagtggggcttacagaggccagggaat<br>aaacctggacaaattatgccccacggtggaatcactgggtccataaatcctgtcctggttatctccccattctctgtaaaaaggattctctgtaaaaaga<br>ttacatcgccctaaaccaggacctgagctcttggactgcggcgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr6	74426248	74428428	3000029	0	-	SLC17A5; RIP_SVA_chr6_074_01	NA	NA	OTHER	SVA	SVA_D	ggacaacagagtgagactccatctcaaaaagtaattaattactaaattggtgatttaaatatctgcccctccatttactttttattccccatatattcct<br>acatacttgaaaatttcactaaggccaatatgatgaggcactgtgaaacacaatgaacacagtgaaaggacaagaactgggatctgctcaggttgcagaa<br>aataaataagactttgttccagctcctaggaaacctacagttataaaaggaaactaaaacattaaataatcaactactaactataaaattccatacagaa<br>aatgatatgtatcctaaaagagatataattaaaatcaaatgggttgttcctaagataggtaagctcattttgcaaagcaaatttaactctaa<font color="green"><u>AAAAATGG<br></u></font><font color="red">CAGGCCTGGCCTCCTCTGGGTGGATTTTCATTCTGCAGCATTCATTCAGGAAGCACTCATGAAGAGCCTACCAGGTGCCGGCCCTGGCCTGGGGCTGGGC<br>TTAGAGCCGGGGCAGGATGGCCCGGCATCTGCTCCATGGAGCTCACAGCCCAGCCTAGGCTGGCAACTCCAGTCTGCCCCAGTTTCCAGTTCTGTCCATT<br>CCCCTTGCAGCTCAGCATGGATGAAGCTTTGAAATCCAGCTCTCCCTCTCCCTCTCCCTCTCCCGTCTCCCCACGGTCTCCCTCTCCCTCTGTTTCCACG<br>GTCTCCCTCTCATGCCGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCC<br>TGCGATTGCAGGCACGCGCTGCCACGCCTGACTGGTTTTCGTATTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCTGGCCGGTCTCCAGCTCCTA<br>ACCGCGAGGGATCCGCCAGCCTGGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCCGGCTGGAGTGCGGTG<br>GCGTGATCTCGGCTCGCTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCATCCTCTGCCCGGCCGCCACCCCGTCTGG<br>GAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGAAGTGAGGAGCCCCTCTGCCTGGCTACCCAGTCTGGGAAGTGAGGAGCGTCTCCGTCCGG<br>CCGCTATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCTGGCAGCCATCCCATCTGGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGT<br>GGGGAGCGCCTCTGCCCCGCCGCCCCGTCTGGGATGTGAGGAGCACCTCTGCCCGGCCGCGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCAGCCAC<br>CCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCAGCAGCCGCCCCGTCTGAGAAGTGAGGAG<br>CCTCTCCGCCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCATCTCCGCCCGGCAGCCACCCCCTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCC<br>GGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCAGCCAGCCGCCCGGTCTGGGAGGGAGGTGGGGGAGTCAGCCCCCCGCCCGG<br>CCAGCTGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCTCGTCCGGGAGGG<br>AGGTGGGGGGGTCAGCCCCCCGGCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAG<br>GTGGGGGGGTCAGCCCCCCGCCCGGCCAGCTGCCCCATCCGGGAGGTGAGGGTCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCC<br>CGGCCACCACCCCGTCTGGGAGGTATGCCCAACAGCTCATTAAGAACGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGGGGGAAAGGTGGGG<br>AAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTATACTAAGAAAAATTCTTCTGCCTT<br>GGGATCCTGTTGATCGGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGT<br>GCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCGTCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCA<br>GGGTACTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGTG<br>AGAAACACCCAAGAATGATCAATAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAACAAAATAAAAT</font><font color="green"><u>AAAAATGG</u></font>taatggcggcc<br>aagcgcggtggctcacgcctgtaatcccagcactttgagaggccaagcgggggtggatcatctgaggtcaggagttcaagaccagcctggccaacatgct<br>gaaaccccgtctctattaaaaataacaaaaattagctgggcatggtggcaggctcctgtaatcccagcaattcaggaggctgaggcaggagaatcgctgg<br>aacccaggaggtggaggttgcagtgagccaagatcacgccattgcactccagcctgtgtaatgagggttaaactccgtctcaaaaaaaaaaaatgctaat<br>ggctaacatatattgaaatgtaataattacagtacagtacccaccaggtacagtactgtaatttacaggtattatcttatt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr6	158468271	158469054	3000030	0	+	SERAC1; H6_F_172; RIP_SVA_chr6_158_01	CTCAAGCAATTCCTTGCCTCTACC	CTTCTATAGTTCGCTCAGGTAACAGC	OTHER	SVA	SVA_F	gaccaacctaggcaacaaagtaggacccccgtctctacaaaaagtttttcaaattagccatgcacaatggcacgtgcctgtagtcccagctactcgggag<br>gctgaggtgggaggatccattgagcctaggagtttaaggctgtagtgagctatgaccacaccactgcactctagcttcagcaacacagtgagattctctc<br>aaaaaaaaaaaaaaattacataaataattagatgatcatcatggcaaacctgctctcctatgatcatctacaatactgattatcttaggcgcagattatc<br>tacaatctcaagcaattccttgcctctaccaaaataacatgttctaaggacccataactaaccctaagtagagccttgtctatt<font color="green"><u>GAAAAATGAACATATC<br></u></font><font color="red">TCGGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGC<br>CGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGG<br>AAGTGAGGAGCCCCTCTGTCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATA<br>GAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATTGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACT<br>AAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGA<br>TTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACAC<br>AAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACC<br>CTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAAATGAACATATC<br></u></font>atgaggggtagaggtgggagaacaaagtaaaaaatactcagtatataaagctgttacctgagcgaactatagaagaatgaagatgttcattcaaagccat<br>atttccaatgacacgcattatatttctctgtactttagggcagtccttgtgaagtcggtacagcctctgaagtagctgcaggcctccatttgcttcgatt<br>ttatcacaatgtgtggatatctggcacaataaataaacagaagctcccttgacattgtacaaattcatgacgtgagatgacacagcctggtcatggggac<br>agctaggtagctcccactcaagggcagggatgcagggagactcctcaaagctcttgtctcagcttgcttaaataagcaaatccc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:SERAC1:NM:032861:10/17
0	chr7	1151605	1154180	3000031	0	-	LOC90637; H7_E_5; RIP_SVA_chr7_000_01	AATTTTGAAACTGGGTGGTCAG	TCATTTCCATCAGGtAGGCTTT	OTHER	SVA	SVA_E	cccactgggaggcttggaacagatccccagaggataaacggggactgctgtataatttttgtagcacagagttagaagtgtgtgtatatttctagaaatg<br>caaataaaaccaaggcctgaagagtaaaaaaatatttacatgttgaaataatattttgaatatgctaggttaataaaacattaaaatgaatttcacttgg<br>gttttactgtgactgctcaaaattttgaaactgggtggtcagctcggtgctgtccctgttagatggcgttgtctagctctcccaccaaaggccaaacagc<br>cctggcacattttctcagcggggagaggcggcgcctggttcatgcattgcgttttctgtcttcgatttgacggagtattgaagtat<font color="green"><u>AAAACTTAAGAGTG<br></u></font><font color="red">CTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCCCCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCAAGGCTGG<br>ACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCACCGCCACGCCT<br>GACTGGTTTTCGTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCGCGAGTGATCCGCCAGCCTCGGCCTCC<br>CGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTGCAACCACCTCC<br>CAGCCGCCTGCCTTGGCCTCCCGGAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATC<br>GTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCTGGCCGCCATCCCATCTGGGAAGCGAGGAGCGCCTC<br>TTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGG<br>ATGTGAGGAGCGCCTCTGCTGGGCCGCAGCCCTGTCTGGGAGGTGGGGAGCGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGG<br>CAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCAGCAGCCACCCCGTCCGGGAGG<br>GAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTC<br>TGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGCGGGGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGACGCCCCGTCCAGGAGGGAGG<br>TGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGTTGG<br>GGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGC<br>CAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCCCCGTCCGGGAGGTGAGGGGCCCTCTGCCCGGCCGCCCCTACTG<br>GAAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGTCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGG<br>GGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCCCCGTCCGGGAGGTGAGGGGCGCCT<br>CTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGACAGCCCCCCCGCCCAGCCAGCC<br>GCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGTCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGTGG<br>GGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGC<br>CACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAA<br>AATTGAGAAATCGGATGGTTGCCGGGTCTCTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGA<br>TCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTT<br>TGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCAAGGCCG<br>CAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTG<br>CGAGAAACACCCAAGAATGATCAATAAAAAAAAAATAAATTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTTAAGAGTG</u></font>aggccaggtg<br>tggtggctcaggcctgtaagaccaaaactttgggggggccaaggcgggtggatcacttgaacccagaagttcaagaccagcctgggccacgtggcaaaac<br>cctgtctctacaaaaaatacaaaaattagccaggtgtggtggtgcgtgcctggagtcccaccaactcgggagacagaggtgggaggatcgcttgagccca<br>ggccctcaaggctgcagtgaaccatgactgtgccactgcactccagtctggatgacagagcgagacccttctcaaaaaaaaaaagttgatggaacccaaa<br>gcctacctgatggaaatgaaggtgtccccagagtgccactgagagcgggcgagtcggccgtggccctgccggctgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	3099	510	NA	intergenic
0	chr7	10470842	10472658	3000032	0	-	BC002644; H7_F_22; RIP_SVA_chr7_010_01	CATGGAACTCTGCTTGACGTACAC	CCAGCATTGTGCTTCCTGTATAGCC	OTHER	SVA	SVA_F	tacatatgtatacatgtgccacgctcgttttaaaagcatatatttaaaactaatggcaattttatactacacagtttcattcagctgtttaattcctcct<br>tgctagtagttgaaagttgcatgtccctagaaatgctgtgtaatgatttactgtcatggaactctgcttgacgtacacaataaggatataaatatgttgc<br>ctaacctactatttttaatactggaatttgcttaaaataaatttctaaccttgtacattttcattattatattaacctggggaaaaattctttgtaaaga<br>tatttaattaaaatccttatactagacagtattattccattcttacatagctgtaaagaaatacccgagactgggtaatttat<font color="green"><u>AAAGAAAAGAGGTTTAA<br></u></font><font color="red">GTCTTTGCCGCCGCGCCAGCGAGCGCCGCCCGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTG<br>GCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTGCCACCCCGTCTGGGAGGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGG<br>AGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATC<br>ACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCT<br>CTGCCCGGCCGAGACCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGT<br>CCGGGAGGGAGGTGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGTGCCA<br>TCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCCCTCCGTC<br>CGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCA<br>GCCCCCCCACCCGGCCAGCCGCCCCGTCGGGTAGGGAGGTAGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGGTCAG<br>CCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCC<br>CGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGA<br>GGAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTC<br>TGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGA<br>CAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGGTGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGA<br>CTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGT<br>GTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTA<br>ATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCC<br>CTCCACTATTGTCCCATGACCCTGCGAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTAAAAAAAAAAAAAAAAAACAAC<br>CAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAAAGAGGTTTAA</u></font>ttggttcatggttacataggctatacaggaagcacaatgctggcatgtgcttggcttctggggggc<br>ctcaggaagcttccaatcatggcggaaggcaaaggggagcaggtacttcacatggctggagcaggaggaagagagggtggaggtgccacacacttttaaa<br>caatcagatcttttgagaacttatattgtgtgaacagcactaaggggatggtgccaaaccattcatgagaactgcccccgccccgccccgccccacaatt<br>caatcactttccaccaggccccacctccaacactgaggattacaattcgacatgacatttggaggggacacagttccaaatcgtatcacagaccatattt<br>agataataggcaaaaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr7	55254253	55256555	3000033	0	-	EGFR; H7_F_61; RIP_SVA_chr7_055_01	GGGATAAATTCTCTTGTGGGACTGAG	GTGAGATACTGATCCAAGTCTCAG	OTHER	SVA	SVA_F	tgtctatattaaaactctccctctctctctatataatcacttattatttccttagttgtaattctttcactgttcaattagaactttactaaattattat<br>atgtctttcttttggttaaggtagtagatgaagtttgaaatcatcttttattctggaatgctagtgggcctttctcaactaaggtcccaggagagaacta<br>agccctacaaaaaacaaataggtgaccgttgtctctattcccccaaggatgatgcataactagcacaattctagaagggtaggagagaaggtattaatta<br>ttttcagtagattcctgcatgcatcagggataaattctcttgtgggactgagaacacccaacaccctgctgcttcaactcccttt<font color="green"><u>TAAAAGCACATTGCA<br></u></font><font color="red">GAGTTGCCAATTAGCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCC<br>TCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCCCCTCCCCCTCCCCCTCCCTCTCCGTCTCCGTCTCCGTCTCCCTCTCCC<br>CACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAG<br>TGCCTGCGATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCGAG<br>TGATCCGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATC<br>TCGGCTCACTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAG<br>GAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCCGGCCGCCCAGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCCGCCATC<br>CCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCG<br>CCTCTGCCCCACCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTG<br>AGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCCCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCG<br>CCCAGCAGCCACCCCATCTGGGAAGTGAGGAGCATCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGAGGGGGGGTCAGCCCCCCGCCCGGCCAGC<br>CGCCCCAACCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGC<br>CCGGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGG<br>GGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCA<br>GCTGCCCCGTCCGCGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGCGAGGGAGG<br>TGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAG<br>GGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGG<br>CCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGA<br>CATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAAC<br>ATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCAC<br>CAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGC<br>TGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>TAAAAGCACATTGCA</u></font>actctttctgttgctggttcctgtaagcaatacatttaaaaatattatttgtttcttaggatttaaaatgtgttgtattgaa<br>acgttgacccatcatggctgagacttggatcagtatctcacttcaggaaacaggactcaagctgggcgcaggggctcacgcctgtaatcccagcactttg<br>ggaggccgaagtgggtgaatcacacggtcaagagattgagaccatcctgaccaacatggtgaaaccccgtctcaactaaaaaagcaaaaattagctgggt<br>gtggtggctggtgcctatagtcccagctactctggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagctgagatcatgcca<br>ctg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr7	100787987	100790515	3000034	0	-	FLJ14117; RIP_SVA_chr7_100_01	CAAGTGACTCTCCTGCCTCAGCC	CTCACGCCTGTAATCCCAGCAC	OTHER	SVA	SVA_D	ggccaggagttcgaggccagcttggacaacatagtgagacccccccatctctacaaaaaaaaaaaaaaagcaaagcgtggaggtgtgtgcctgtagtccc<br>agctactcaggagtctgaggcaggaggattgcttgagcctaagggttcaaggctgcagtgagccatgatggtgccatgacacttcagcctgggttacata<br>ctgagcctgtccttctcccctcaaagaaggattgtaggattgttgttagaagacgacaggaagatggccaagcatggtggctcacgcctgtaatcccagc<br>actttgggaggccaaggcaggtaaatcacaaggtcaggagctcgagaccagcctgcccaacatggtgaaaccccgtctctact<font color="green"><u>AAAAATACAAAAATTGG<br></u></font><font color="red">ATAACTAGCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCTCTGCCTCTGCCTCTCCCTCTCCCCTCTCCCCTCTCCCTCTCGGTCTCC<br>CTCTCCCTCTCTTTCCACGGTCTCCCTCTGATGCCGAGCCGAAGCTGGACTGTACTGCCTCTGCCTCTGCCTCTCCCTCTCCCCTCTCCCCTCTCCCCTC<br>TCCTCTCGGTCTCCCTCTCCCTCTCTTTCCACGGTCTCCCTCTGATGCTGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCT<br>GCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCAATTGCAGGCGCGCGCCACCACGCCTGACTGGTTTTCATACTTTTTTGGTGGAGACGGGGTTTC<br>GCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTTGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTGGTTCACTCA<br>GTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCGCTACAACCTCCATCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCAAGAT<br>TGCAGCCTCTGCCCGGCCACCACCCCGTCTGGGAAGTAAGGAGCGTCTCTGCCTGGCTGCCCATCGTCTGGGACGTGAGGAGCCCCTCTGCCTGGCTGCC<br>CAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCGGCAGCCATCCCATCTGGGAAGTGAGGAGC<br>GTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCGTCTGGGATGTGAGGAGCGCCTCTACCCGGCGGCGACCCCGT<br>CTGGGAGGTGAGGAGCGTCTCTGCCCAGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCCGCCCAGCATCCGCCCCATCTGAGAAGTGAGGAGCCCCTCCG<br>CCCGGCAGCCGCCCCGTCTGAGAAGTGAGGAGTCCCTCTGCCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCGCCCCGTCCG<br>GGAGGGAGGTGGGGGGGTCAGCCCCCCGGCCCGGCCAGCCGCCCCGTCCGGAGGGAGGTGGGGGGGTCAGCCCATCCGGGAGGGAGGTGGGGGCGGTCAC<br>CGCCCGGCTAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCTGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTG<br>CCCGGCCAGCCACCCCGTCCGGGAGGGAGGTGGGGGTGTCAGCCACGTCGGGAGGAGGTGGGGGGTCAGCCGCCCGGTCCAGCCGCCCCGTCTGGAGGGA<br>GGTGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCAGG<br>CCAGCCACCCCGTCTGGGAGGGAGGTGGGGGGCTCAGCCCCCCGCCCGGCCAGCCGACCCGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGTGAGGGGCACCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGG<br>TGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCAGCCCGGCCAGCCGCCCTGTCCGGGAGGTGAGGG<br>GCGCCTCTGCCCAGCTGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGG<br>CCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCACCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCAGCCACCACCTCGTCTGGGAGGTG<br>TACCCAACAGCTCATTGAGAACGGGCCGGGATGACAATGGCGGTTTTGTGGAATAGAAAGGGGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTG<br>CCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGATAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTA<br>CCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGG<br>CAGCATGCTCGTTAAGAATCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGA<br>GACCTTTGTTCACTTGTTTATCTGCCAACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAA<br>AAAAAATAAAAATTAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATACAAAAATTGG</u></font>ctgggcgtggtggcgggcgcctgtaattcccagctactcaggaggctgaggcag<br>gagagtcacttggacctgaaaggcggaggttgcagtgagccaagatctcgccactgcactccagagcaagactctgtctcaataaataaataaatggaat<br>gtccatacttcccaagtcccaagtctctgtcttaaactcagagttggtcatctaggagtaaacagcctcctaatggaattgcttcgttcctctcgccctc<br>cttccctcccttgaggcctaaaagatttggagaatttaggttatcaggggatgttcagtgcctcccccaaaaagaatctgaactgtgctccttgggcagt<br>tggccaacacctaataaatgatgaggtca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr8	85915630	85915631	3000035	0	-	TNKS; RIP_SVA_chr8_048_01	GGCAGCCAGAGAGAAAGGTCGG	GAGCTCTTTTAGGGCAGGCCTG	OTHER	SVA	SVA_F	tgggtttcctgaatacagcacactgatgggtcttgactctttatccaatttgccagtctgtgtcttttaattggagcatttagcccatttatatttaagg<br>ttaatactgttatgtgtgaatttgatcctgtcattatgatgttagctagttattttgctcattagttgatgcagtttcttcctagtcttgaaggtcttta<br>caatttggcatgtttttgcagtggctgttaccggttgttcctttccatgtttagtgcttccttcaggagctcttttagggcaggcctggtggtgacaaaa<br>tctctcagcatttgcttgtctgtaaaggattttatttctccttcacttatgaagcttagtttggctggatatgaaattctgggtt<font color="green"><u>GAAAATTCTTTTCTT<br></u></font><font color="red">GGCAGCCGCCGCCGCCCGACCGCCGGGAGGATGGAGTTCAGCGGGCAGCGGAGCTGTCTCAGTCTTTGCCGCCGCGCCGGCGAGCGCCGCCTGGGAGGCA<br>GCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTG<br>CCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAG<br>CGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCA<br>TCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTC<br>TCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCT<br>GAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGG<br>GGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCC<br>GGCCAGCCGCCCCGTCCAGGAGGGAGGTAGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCT<br>ACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTGTCCGGGAGGG<br>AGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTG<br>CCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCC<br>CGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCACCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAG<br>GTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGG<br>TTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACC<br>TTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGA<br>AGGCAGCATGCTCGTTAAGAGTCGTCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGTGGGGTCCTCTGCCTAGGAAAACC<br>AGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAA<br>TAAAAAAATAAATTAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATTCTTTTCTT</u></font>taagaatgttgaatattggcccccactctcttctggcttgcagagtttctgccgag<br>agatcagctgttagtctgatgggcttccctttgtgggtaacccgacctttctctctggctgcccttaacattttttccctcatttcaacttcggtgaatt<br>tgacaattaggtgtcttggagttgctcttctcgaggagtatctttgtggagttctctgtatttcctgaatttgaatgttggcctgccttgctaggtttgg<br>gaagttctcctggataatatcctgcagagtgttctcccacttggttccattctccctgtcactttcaggtacaccaatcaggacgtagatttggtctttt<br>cacatagttccatatttcttggaggcttt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:RALYL:NM:001100391:4/9
0	chr9	33413377	33414654	3000036	0	+	AQP3; RIP_SVA_chr9_033_01	NA	NA	OTHER	SVA	SVA_E	aggaatatgagaaatatccaggtttgttttaatttttaatcctttatatatttacctttttttttttgagacagggtctttgttgcctaggctggagtgc<br>agtggcacgatcttggctcactgcaacctctgcctccctgattcaagcagttctcatacctcagcctccggagtagctgggattacaggcatccgccacc<br>acgcctggctaattttcgtatttttttgtaaagacagggttttgtcttgttggccaggctggtcttgaattcctgacctcaagtgatctgcccgcctcgg<br>tctcccaaagtgctgggattacaggtgtgaactaccaccctgcctatatttacctcttgaatccatcgattttatggcatgaggt<font color="green"><u>AAGAATCTAGTTTTT<br></u></font><font color="red">CGGCCGCCCCTACTGGGAGGTGAGGAGCCCCTCTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCC<br>GTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAG<br>GAGCCCCTCTGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGCGGCGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGGGGTGGAGGGGTCAGCCCCCC<br>GCCCGGCCAGCCGCCCTATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCG<br>GGAGGGTGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCC<br>CTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAG<br>GGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTT<br>CTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTGAATGGATTAAGGGCGGTGC<br>AAGATGTGCTTTGTTGAACAGATGCTTGAAGGCAGCATGCTCGTTGAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAA<br>GGCAGCGGGGTCCTCTGCCTAGGAGAACCAGAGACCTTTGTTCGCTTGTTTGTCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCC<br>TTCTGCGAGAAACACCCAAGAATGATCAATTAAAAAAAAAAAAACAAAAAAACAAATATTTACGTATGATAATGAGAAGAACACTGTCCTAGATGGCTGA<br>AATGCTAATAGTCTTTAATTCACTATTTTCTTATTCTGACTGTTGCAAAGATTTGTAGTTTTATTGATGATTCTCACTCATGTTCTAAAATAGGAGTTGG<br>CAAACTATTGGCTGCCTGTGTTTATGAATAAAGTTTTCCTAGAACACAACAACAAAAAAAAAACAAACAAAAAAAAAA</font><font color="green"><u>AAGAATCTAGTTTTT</u></font>gctttcc<br>agaggtgagaagaaggggtcttcttcaggaaccccgagccccatcctcttagccctcagtttatgttttttttttattctttatttttttgattcttttt<br>tttttttttttgagacggagtatcgctgtgtcgcccaggctggagtgcagtggcccgatcttggctcactgcaacctccacctcctgggttcacgccatt<br>ctcctgcctcagcctcctgagtagctgggactacaggcgtccaccaccacgcccggctaattttttgtatttttagtagagacagggtttcactgtgtta<br>gccaggatggtctctatctcctgacctcatgatccgcccgcctcggcctcctgaagtgctgggattacaggtgtgagc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SUGT1P:NR:003667:5/7	
0	chr9	83514184	83516746	3000037	0	+	BC036431; RIP_SVA_chr9_081_01	NA	NA	OTHER	SVA	SVA_F	gtcaagaccagcctggccaagatggtgaaaccccgtctctactaaaacaaaaattagccaggcgtggtagcgggcacctgtaatcccagctactcgggag<br>gctgaggcagagaattgcttgaacctgggaggtagaggttgcagtgagccgagattgcaacatgcactccagcctgggcgacagagccagattccttctc<br>aaaaaaaaaaaaaaaaaaaaaaaagatattgaaacagcttgaagcaagacctgttctttctagggttctcagtctcttttggagttagtttcggtgggct<br>ttaccaacggaagggagaggtaaacatggctggagggtatgcctggcagtagatttgggagagggaatttcttctcctgcacatc<font color="green"><u>TAAAATGGCTCTAGC<br></u></font><font color="red">GCCCTCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCTCTCCCTCTCCGTCTCCCTCTCGC<br>TCTCCGTCTCCCTCTCGCTCTCCCTCTCCCCACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCATCCTCCC<br>TGCCTGATTCTCCTGCCTCAGTCTGCCGAGTGCCTGCGATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGACAGGGTTTCGCTGTGTTGG<br>CCGGGCCGGTCTCCAGCCCCTAACCGCGAGTGATCCGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATG<br>GTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCT<br>GCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCTGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAA<br>AGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCACCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCC<br>GGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTG<br>AGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCC<br>ACCCCATCTGGGAAGTGAGGAGCATCTCTGCCCAGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCCCAT<br>CCGGGAGGGAGGTGGGGGGTCAGCCCCCCCCGCCCGGCCAGCTGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCTCCCGGCCAGCCGCCCCGTC<br>CGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCA<br>GCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAG<br>CCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCC<br>CGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCG<br>TCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGG<br>TCGGCCCCCCGCCCGACCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGTGTC<br>AGCCCCACGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCT<br>GCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGGGTCAGCCCCCCCCGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGG<br>CGGCCTTGTGGAATAGAAAGGCGGGAAAGGCGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTC<br>ATTTTGTTCTGCACTAAGAAAAATTCCTCTGTCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCAC<br>TCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCA<br>AGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCAC<br>TATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAATAAATAAATAAATAAATAAATAAA<br>TAAATAAAATAAAAAAAAAAAAGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TAAAATGGCTCTAGC</u></font>agagccctctttgccctcatac<br>ttccgtcccctttgtaccttccacttgactaccccctcaccaccctgcattcccctcagtatactaatctgggccacatttatcagcgtgtgtcattact<br>gttcattaaagttgagaaaccacattccattttactctttcttacctcctgccaccccaaaggatcaagctagtcttccttgtacattctgatgctgctt<br>agactcaggaaagaaacagaagtggaatgccctgctcaggagttccggccttggccatatcttctcctaaaaattaaccagagttggccgggtgcagtgg<br>ctcatgcctgtaatcccagcagtttgggaggctgaggtgggcagatcacgaggtcagaagttc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr9	109073276	109075265	3000038	0	+	RAD23B; RIP_SVA_chr9_107_01	NA	NA	OTHER	SVA	SVA_D	ctgctgggatgggcagtgttgactccagacctgcccattaggttggttgaaactgtctgatctacatcacagtctgactctctctctctgcccaattgtg<br>cttcctttctactttcctttcaaaggaaatattatcaccattgtctaaaggctttccttaccaaatcctgcttcctcccttctatttttcacaactgata<br>accatcaaaaaaaaaaagactactattcctaactgttttggtgtctgcttcccaggtacctgaacttacacagtgactgaacaacaaataagagatttac<br>aaggatgagaaacttgagctgtaagcagcaggatggaggttgaagaagcccgaagtctaagaagacaaagattataataataataat<font color="green"><u>AATTATTATTATT<br></u></font><font color="red">GGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCAGGATGGCAGACGGAGTCGCGTTCACTCAGTGT<br>TCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTCCACCTCCCAGCTGCCTGCCTTGGCCCCCGAAAGTGCCGAGATTGCA<br>GCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGTAGCCTCTCTGTCTGGCTGCCCAGT<br>CTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCTGCCGCCCCGTCTGGGATGTGAGGAGCGTCTCTGC<br>CCGGCCACCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCGCCCCGTTTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCCACACCGTCTGAGAA<br>GTGAGGAGCCCCTCCGCCCAGCAGCCACCCCGTCTGGGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGTCAGCCCCC<br>CGCCCGGCCAGCCGCCCCCTCCGGAAGGGAGGTGGGGGGGTTAGCCCCGCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCG<br>CCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTAGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCGG<br>GAAGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGAGAGGAGCCC<br>CTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGTATCAGCCC<br>CCCGCCCAGCCAGCCACCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCACGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGC<br>CGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCAGCCAGCCGCCACGTCC<br>GGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGGGGGGGGTCA<br>GCCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGTGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACC<br>CCGTCTGGGAGGTGTACTCAACAGCTCATTGAGAACGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAG<br>AAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAGGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTT<br>GATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTGAATGGATTAAGGGTGGTGCAAGATGTGCTTTGTTAAA<br>CAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTTTAC<br>CTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTGTGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCA<br>AGAATGATCAATAAAATAAATAAATAAATAAATAAATAAAATAAAATAAAATAGCACAATTATAACAATATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATTATTATT<br>ATT</u></font>attattattcttattttgagacagggtctcatgctgtcacccaagctggagtgcaatggcacgatcacagctcactgcagcctcaacctcccaggct<br>caagtgatatttccacctcagcctcctcagtagctgggatcacaggcatgtgccaccacacccagctaatttttttttatttttttgtagaggcggagtc<br>tccctatgttgctcatgctggtctcaaactcctgctggatcactcaagtgatcctcccacctcagcctcccaaagtgttgggattacaggcgtgagacat<br>gatgcacagtctgacaaaaggtatttttaaagtttaattgttgcaggctgaaactgtttttaagtgtttaattgtgggatgctgaaatgc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	156917082	156917083	3000039	0	-	Alpha spectrin; RIP_SVA_chr1_155_01	AACTTAGAATATTTAGCT	TGCATTTTGACTTAATTTAT	OTHER	SVA	SVA	ctgatatgttgaattgagtagaaacaggatgaatttatccctcatgtttcaaaacacaaaagggtactttcagggtctcttgccagtaatgccacaaact<br>tgctaaagaactgcccgaaagagcactttcccttgtgccaaggtgctaccttaacaaatatacttctgctgctggccttttccaggagagcttctcccag<br>tctcccccagtatctccatttgagttatcctgggaatgcaagcaggagttttgagtttttgacctacagaaactcctaaatgtttgctggcaactcaatc<br>aacttctgtgtctacaggaggctatagcgacatcagtggagctaggtgaagactgggagcgcaccgaagttctgcataa<font color="green"><u>GAAATTTGAAGACTTCCAAGT<br></u></font><font color="red">TGCATTTTGACTTAATTTATGAGTATTTATTTATTATGAGCCATTTGACAGCATGCAAGACACAACACAAAACATAATACATGTACATCACATAAATATA<br>TCTAAACATGAATACATATCCACAAAGATCCAATAGTTTCACCTTAGAATTCTAGCTGTAAGATAGCAATATAACTTAAGATTCTATATAAGATCACTGG<br>ATAAGAATTATTTTTCTGTCAAAATTGAAATCTGTTTACATGGCTAAATTTTGTTTGCCCTATTGGGTAATGTAAGGAAAGCTGTAGACCAAAATTTGGG<br>TAGAGCATCTTTAGGACAGTTTGGCAATCTTATAACTGGCTTTAAAGTCACTGGTAAATAAAATAAAATAGCTTCAGAATCATCAGCATTCATTTTTGTT<br>TAGGTAGGAAAGTTTTATATATGCCTGTTGGATATTTTAAGGTGTCAGGGTTTGACACAAAGGTTGTGAAACTATAAACCTAGACAAAAACAGAGTAATC<br>TTTGTGTAATTTTTTAAACAAAGACTAATTTAATGTTGTTGGTTCATAAACAGCTAAATATTCTAAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAATTTGAAGACTTCCAAGT</u></font>ggagctggtagctaaagaagggagagttgttgaagtgaaccaatatgccaatgagtgtgc<br>cgaggtgaggtgggagcaaaatattcactccgtgcaaagggttcttatccttaagaataacttctggccattagtagatggatatgaaggagatggggca<br>ttgtgagaaaacagaggttggcatgttcctggagtaacatattctgaacagtttcctctcccctctggacccaccccttacaagtctattgaaatggagg<br>gttgagagagaaagagagagtgtgtttttgtgtgtttggagaaattaaatacacaatgggcagtgaagctattgccatttatatagtagcttctgtacca<br>tgcagtacactgattactc	Other	<UL><LI>Hassoun H, Coetzer TL, Vassiliadis JN, Sahr KE, Maalouf GJ, Saad ST, CatanzaritiL, Palek J. A novel mobile element inserted in the alpha spectrin gene: spectrin dayton. Atruncated alpha spectrin associated with hereditary elliptocytosis. J Clin Invest. 1994 Aug;94(2):643-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8040317">PMID:8040317</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	50	NA	NA	Hereditary elliptocytosis	exon:CDS:SPTA1:NM_003126:5/52
0	chr9	107441759	107441760	3000040	0	+	SVA-FCMD; RIP_SVA_chr9_105_01	NA	NA	OTHER	SVA	SVA_E	cttccactatcattaagacctgggctagatcacctctaacatctcactcagggaaggcaatgtgttgccataaaaagaccacaagcttttgagttaggcc<br>tgaatttgaatttcagcttaatcatgtgggatttatggtgggggccctttcagtctcaatttccacattagtgaactggggaaatgatacatacttctaa<br>gggtttttagggggattaaatgaagtatacagttcttagcctcaggcctaggattaagtaagtactcaagaaatgtgcaattttctagttccatgtttct<br>tttctaatcttcaaatggaattatagaaaccatgggtcagaacatattcctttactcaaaagattgcatgactgaatttgctt<font color="green"><u>AAGAAAAAAAAAATTGT<br></u></font><font color="red">GTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCT<br>CTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCC<br>CTCTCCCTCTCCCTCTCCCTCCACTGTCTCCCTCTCCCTCTCCCTCTCCCTCCACAGTCTCCTTCCACGGTCTCCCTCTGATGCCGAGCCAAGGCTGGAC<br>GGTGCTGCTGCCATCTCGGCTCACTGCAGCCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCTACGCCTCACTGGTTTTCGTTTTTTTTTTGGTGGAGACG<br>GGGTTTTGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCACGAGTGATCCGCCAGCCTCGGCCTCCCGGGGTGCCGGGATTGCGGACGGAGTCTCAT<br>TCACTCAGTGCTCAGTGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAGCCTCCACCTCCCAGCCGCCTGCCTTGGCCCCCCAAAGTG<br>CCGAGATTGCAGCCTCTGCCCAGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGGAGCCTCTCTGCCT<br>GGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCTTCCCATCTAGGAAGT<br>GAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGCCGCAA<br>CCCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCC<br>CCTCCGTCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCGGCCCCCCGCCCGG<br>CCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGTCGCCCCGTCCAGGAGGG<br>AGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTG<br>CCCGGCCAGCCGCCCCGTCCAGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGTGGGGGTCAGCCCCCCGC<br>CCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGTGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCTGGG<br>AGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCT<br>CTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCC<br>GCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGTCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCC<br>TGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCC<br>TACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGG<br>GAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGACCAGCCGCCCCGTCCGGGAGGG<br>AGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTG<br>CCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGCGGGGGGGGTCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGG<br>CCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCTGTCCGGGAGGATGGT<br>GGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCG<br>GCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAA<br>AAAATTGAGAAATCAGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGG<br>GATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGC<br>TTTGTTAAACAGATGCTTGAAGGCAGCATGCTGGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCACAGG<br>GTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAG<br>AAACACCCAAGAATGATCAATAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAAAAAAAATTGT</u></font>atcaagtcattaatacaattatacattaattatattac<br>attaatacaatatatggtttgtgaattcagagacattaccagtttgcctccttctctcaatagaacttgtattttcattttcttggttaagcagttgtct<br>cctaatattatcccatatgctacctagtttgctggtcccaagcagtttactgtacttcactagatttggtacctgctctcccctggacttctttttcaat<br>attctagcctttcctagatgtaaatctttacctccttgttagtgaaattagatataagccatgatttggagagggaagaaatctggaatacttaatttca<br>tttaattatctatgctgatgaatgcctgtatcattgttaataaag	Other	<UL><LI>Kobayashi K, Nakahori Y, Miyake M, Matsumura K, Kondo-Iida E, Nomura Y, SegawaM, Yoshioka M, Saito K, Osawa M, Hamano K, Sakakihara Y, Nonaka I, Nakagome Y,Kanazawa I, Nakamura Y, Tokunaga K, Toda T. An ancient retrotransposal insertion causes Fukuyama-type congenital musculardystrophy. Nature. 1998 Jul 23;394(6691):388-92.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9690476">PMID:9690476</a>.</LI></UL>	E:Library screening:TE-specific hybridization	NA	NA	NA	NA	Fukuyama-type congenital muscular dystrophy	exon:3UTR:FKTN:NM_006731	
0	chrX	100501743	100501744	3000041	0	-	Btk; RIP_SVA_chrX_100_01	TGGATGAACTGCCACATT	CCTCACTTATGCAAGGAG	OTHER	SVA	SVA	gcatcctcatcagagactgttcttcccacaccagactgaacatgctctccctccaagtacttcccagcgtgcagctccctatacatggcctctgccacat<br>ctctgagcctctgttgttgggcacatataaccaatgcaacatgtgcataagctctgcacctcactggctcactgcctaaccatgcatcagagacatgatt<br>gtctttgagggaggtgcatgatacatatacctccatttgagatttgttctgagctcagggacgtgggcatatgaatctgtctcctggaggctggggaggt<br>gctggatgaactgccacattgtttccttcacaggcaggaaggctacattcctagtaactatgtcactgaagcagaagactccata<font color="green"><u>GAAATGTATGAGTAA<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GAAATGTATGAGTAA</u></font>gtatgtttatgtcagtccacaatcttccaggaggaactctctctctctatatatatatatatttatttatttata<br>tatattttatatatatttatatatatatataacacacacaagtgtatatatgtatacatatgtatacatacactggtgtatatataggtatattatgtat<br>acatacacaagtgtgtatatatatatatacacttttttctactttcaacatattttttatttcaagatatatattaaaattagtaccatctgaatcaaat<br>gatgccaccacctcaaattagtgtatctgtcttacctttaccccccaaacaccctccatttatgagagctggagaggtcaccatgccctcaaatccagaa<br>gaatcacact	Other	<UL><LI>Rohrer J, Minegishi Y, Richter D, Eguiguren J, Conley ME. Unusual mutations in Btk: an insertion, a duplication, an inversion, and fourlarge deletions. Clin Immunol. 1999 Jan;90(1):28-37.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9884350">PMID:9884350</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	Immunodeficiency X-linked Agammaglobulinemia (XLA)	exon:CDS:BTK:NM_000061:9/19
0	chr1	46478472	46481213	3000042	0	+	H1_F_95; RIP_SVA_chr1_046_01	GTGGTGGAAAACAACACAAATG	GaAGGAATGAGGATCACCAAAA	OTHER	SVA	SVA_F	tgaggacccttgtgattacagtgggcccatccagataacccaggataatctccccatcaaaaagtcagacaattggctgggtgtggtggctcatgcctgt<br>aatcccagcactttaggaagccaaggcaggtggatcacctgaggtcaggagttcgagaccagcctggccaacatgatgaaaccctgtctctactaaaaat<br>acaaaaattagctgggcatggtggcatgtgcctgtaagtccagctactagcggggctaaggcaggaggatcgcttgaacctgggaggcagaggttgcagt<br>gagccgagattgtaccactgcactccagcctgggcaacagagtgagattccatctcaaaaaaataaaataaaataaaataaaat<font color="green"><u>GAAAGTCAGACAATTA<br></u></font><font color="red">GGGAGCCTGTCTGGCCATGGTGGCCGCGGCTGGTGGTTGGCGCGGCTGCGCTGCGGCCCGGGGCAGTGCGGAGCCAGGACAGTCGCGGCGCTGACGCCCG<br>CGGGCCCCAGCTGCAGATATGAAGCGGAGCCGCTGCCGCGACCGACCGCAGCCGCCGCCGCCCGACCGCCGGGAGGATGGAGTTCAGCGGGCAGCGGAGC<br>TGTCTCAGTCTTTGCCGCCGCGCCGGCGAGCGCCGCCCGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCC<br>TGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGA<br>TGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGGGAGGAGCGCCTCTTCCCAGC<br>CGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGG<br>AGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACC<br>CCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCGCCCCATCTGGGAAGTGAGGAGC<br>GTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGTCAGCCCC<br>CCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCC<br>CGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCC<br>GGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGTAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCG<br>GGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCC<br>CCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGAGGTCAGCCC<br>TCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGT<br>CCGGGAGGGAGGTGGGGGGGTCGGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGG<br>AGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTTGGGGGGGGT<br>CAGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCC<br>GCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGC<br>CCTGTCCGGGAGGGAGGTGGGGGGGGTCGGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGTTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAA<br>GTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGGGG<br>GGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCTGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGC<br>CACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAA<br>GATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGA<br>TCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTT<br>TGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGT<br>CCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAA<br>ACACCCAAGAATTATCAATAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGTCAGACAATTA</u></font>acaacctaattccatctgcagtcttaattcttctttgctagg<br>taacctatcatcttccagattctggagattgaggcatgactttttttttttttgagacaggatctctctctgttgcccaggctggagtgcagtggtgtga<br>tcttggctcactgcaggctcaacctccggggctcaagagatcctcctactgtacctcccaagcagctgggactacaggaacagcccacaccaccacactt<br>ggataacttttgttcattttttgtagagatgaggtctcactatgttgcccagggtggtcttgaattcctggactcatgcaattctcctgcctggcctcct<br>aaagtgctgggattacaggtgtgagccacccagcctatgaat	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	3791	1345	NA	intergenic
0	chr1	86453329	86455611	3000043	0	+	H1_F_127; RIP_SVA_chr1_086_01	TGCGCAATTCATAGTGTTTAGG	TCTTCAGCAGATTCTCATTTGG	OTHER	SVA	SVA_F	aaaaacaatgaaaggaacataaaatgacaccagggataaggataattttaaacatgtttctttctacccatgtgttttctaagagtaggttattatttgt<br>ctcaatgttttaataacaagaactaaaaaaaaatgaatcaattgcgcaattcatagtgtttaggtaaaaactgacctattgcttagaagtcattcttaga<br>attaagactaaaatggaattgctcttatgtccctaataaagatgacacaatttaatatcataaagattcttcttaaagacaaatttattcaggccatggt<br>atggctgataatatcacaccgagagctaaagcaaggggccagcctgcaaggcactttcctggagtgctagtttataagaaacatt<font color="green"><u>AAAACATTGTCTTTG<br></u></font><font color="red">GATCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCTCCCTCCCCCTCTCCCTCTCCCTCTCCCCACGGTCTCCCTCTCAT<br>GCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGTCTGCCGAATGCCTGCGATTGCAGGC<br>ACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCGAGTGATCCGCCAACCTCGG<br>CCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTACAACTT<br>ACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGC<br>CGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGTGAGG<br>CGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAAGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCC<br>CATCTGGGATGTGAGGAGCGCCTCTGCCTGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCT<br>CTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCAT<br>CTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCGGCCCGGCCAGCCGCCCCATCCGGGAGGG<br>AGGTGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCAGGAGGTGA<br>GGGGCGCCTCTGCCCGGCCGCCCCTACTAGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCTATCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCAC<br>CCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCC<br>GGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAG<br>GGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGG<br>AGGTGGGGGGAGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCT<br>CTGCCCGGCCAGCCGCCCCGTCCTGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGG<br>CCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGC<br>GGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCA<br>TTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACT<br>CAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAA<br>GTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACT<br>ATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAAA</font><font color="green"><u>AAAACATTGTCTTTG</u></font>at<br>gaattagaaattcagtaccagttgactcagaattttatatgtgacttcatacatatctagtaaaacagaaattgatcttaccaaatgagaatctgctgaa<br>gaaattgtccccttggggactcaggagggaagatggggaggtggatgagggatgaaagactacatattgggtacaatgtacactgcttgagtgatgggta<br>cactaaaatctcagaaatcaccaccaaagaacttacccatgtaaccgaaaaccacctgtaccccaaacactattgaaataaaaataaaaataaattgttt<br>ccttaggtcacagtagagggaaaaatgccacaccttatctcctagttcaatcttttgaagtacatataaataagttttatggt	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	2660	465	NA	intergenic
0	chr1	45461244	45462154	3000044	0	+	H1_E_89; RIP_SVA_chr1_045_01	GGAGCTGCTAACGCTAATGAAC	AGCTCATGAGGCACCATTTATT	OTHER	SVA	SVA_E	ctctcaaataaatgtggttatgttatacattattttaatggacactctcgctttatttatttatttatttattttgctgatgacattacttgctgtttat<br>tttatgtttattttagactatggaaatgatgttagacaaaaagcaaatttgagcaattttcctattcaagttcaaaaatgtcgtaaagcagcagagacaa<br>cttgcaacaatgcatttagcccaggagctgctaacgctaatgaacgtacaatgcagtggtggttcaagaagttttgcaaaggagacaagagccttgaaga<br>tgaggagcacagtggctggccattgggagttgataatgaccaaaagagcgcaaacatcgaagctgatcctcttacaactacacaat<font color="green"><u>AAGTTGCCGAAGAA<br></u></font><font color="red">GGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCTG<br>TCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGG<br>ACCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGGGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCTTC<br>TGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGA<br>CAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGAGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTATGTGGATAGAAGTGGACATGGGAGA<br>CTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGT<br>GTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTA<br>ATCTTAAGTACCCAGGGACACAAACACTGCAGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTACTGACCTTCC<br>CTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAATAAATAAATAAATAAATAAATAAATAAA<br>TAAATAAATAA</font><font color="green"><u>AAGTTGCCGAAGAA</u></font>atcaacgtcgacgattctatgttcatttggcatctgaagcaaactggaaaggtgaaaaagttcaataaatggtgc<br>ctcatgagctgactgaaaatcaaaaaaattgttgttttgaagtatcatcttctcttattctacccaacaacaacgaaccatttctcgatcagattgtgat<br>gtgcaacgaaaagtggattttatataattggcaatggccagctcagtagctggaccaagaagcagctccaaggcacttcccaaagccaaagttgcaccaa<br>aaaaaggtcatagtcactggtctgctgccggtctgatccactacagctttttttttttttttttttttttttgagacagggtctcaatctgtcacccaag<br>ctgaagtgcag	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	1187	276	NA	intergenic
0	chr20	52299660	52300749	3000045	0	-	H20_E_91; RIP_SVA_chr20_052_01	GATGAGTGGCAAGTTCATCAAA	AATGACATAAGGCTGCCAACTT	OTHER	SVA	SVA_E	ttgaacaccatggagatgaaagattaaaaaaatgaaaaaaaaaaatctggctacaaactttggtgtctatatggagagctgtctatatggagagctgtct<br>ctcaactcaagtatgttcttgacatgtctagaggtcctgagtttccttatctgagggtgggaatggaggcaggagcacagatggaagggtaggtagaagt<br>atcaatgaggacagctggcatctttgcatgctacggcctctccgtaggacaccaaatttccagttaaagttcttcattggagtgactcatttagtaacac<br>tggtttttaggttcatattgtctgagttcaactcttagctccacctcttactagttgtgtaatcttgatgagtggcaagttcatc<font color="green"><u>AAAAGATTCCCTCTC<br></u></font><font color="red">GAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCTAGCCGCCCTGTCCGGGAGGGAG<br>GTGGGGGGGGTCAGCCCCCCGCCCGACCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAG<br>GGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCC<br>GGCTGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAG<br>GATGGTCGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTC<br>TGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGT<br>GGGGAAAAAATTGAGAAATCAGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTG<br>CCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAG<br>ATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGC<br>CGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTC<br>TGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAATAAAAAATAAAAAAATAAAAAAATAAAAATAAAATTAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGATTCC<br>CTCTC</u></font>cttttctgtaaaatggggtaacactactaccttccacacttcattgctgtgcccagttatttgaaagccaatcccacgcttcatgccatttcatc<br>cctgtgtactccaatatacatctctaagcaaaactgacattttcagatataatcatatttccattgtcacactaagtattaataattccattgcattatc<br>taatatccagttcatatttaaatgttttcacctatcttgaaggtgtctttttgcagacagcagatttattacttgaaatatccaatatgacaaaataatt<br>aagttggcagccttatgtcattctccagtagtaagaagaaaatgcagagaaaaaaacctaattctctgaaatccaaaaatatagatgccc	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	1456	363	NA	intergenic
0	chr2	10959523	10961504	3000046	0	-	H2_F_9; RIP_SVA_chr2_010_01	TTTGTCTAGACGGCAAATGATG	GCTGTTCAtGCCCAATAATGTA	OTHER	SVA	SVA_D	cttctatgagaattatacatttcatgatgccatgggggaagggacgtagagcacaaaatctattagacatagaagaagcagcaattttaccttgcgggtt<br>tcttatttaaataaagggtgggggaacagtttatttaggcataatgggaagtagttgtttgagctgcattttctcattaaaaattttttttatttgttga<br>acaataccattttgggctacagaatgctagatttctatggcagtaattaaaaccagtgcctgtgtatctaagtgatttgtctagacggcaaatgatgcaa<br>gctgtaatctattcctttttatgggctaatcagttctgctcagttaaaatttccttgtgttttgctgaattgaataatacctttcatt<font color="green"><u>AAGATTCAGTTC<br></u></font><font color="red">CCTCTCCCTCTCCCTCTCCCTCCCCCTCCCCCTCTCCCTCTCCCTCTCCCTCTCCCCACGGTCTCCCTCTCCCTCTCTTTCCACGGTCTCCCTCTCATGC<br>TGAGCCAAAGCTGTACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGACTCAGCCTGCCCAGTGCCTGCGATTGCAGGCTC<br>ACGCCGCCACGCCTGACTGGTTTTGGTGGAGACGGGGATTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCAAGTGATCCGCCAGCCTCGGCC<br>TCCCGAGGTGCCGGGATTGCAGACGGAGTCTCCTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTGC<br>ACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCG<br>CCCATCGTCTGGGTTGTGAGGAGCCCCTCTGCCCGGCCGCCCAGTCTGGGAAGTGAGGAGCCCCTCTGCCCGGCCGCCATCACGTCTGGGAAGTAAGGAG<br>CATCTCAGCCCGGCTGCCCATCGTCTGGGATGTGAGGAGCGCCTCTGCCAGGCCGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCTGGCCGCCATCCCA<br>CCTAGGAAGTGAGGAGCACCTCTTCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGTCGCCCATCGTCTGAGATGTGGGGAGCGCCT<br>CTGCCCCGCCGCCCCGTCTGGGATGTGAGGAGCACCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCCGCCCCATCTGGGA<br>AGTGAGGAGCGTCTGCGCCCGGCAGCCAGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGG<br>GGTCAGCCCCCAGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGACGCCCCGTCCGGGAGGGAGGTGGGGGGG<br>TCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTC<br>AGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCAGCCCGGCCAGCCGCCCCGACCGGGAGGGAGGTGGGGGGGTTAG<br>CCCCCCGCCCGGCCAGCCCCCCCATCCGGGAGGGAGGTTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCC<br>GGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTACCCAACAGCTCATTGAGAACGGGCCAGGATGACAATG<br>GCGGCTTTGTGGAATAGAAAGGGGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTT<br>CATTTTGTTCTGTACTAAGAAAACTTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCA<br>CTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAAGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTC<br>AAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCA<br>CTATTGTCCTATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAATAAATAAATAAAAAAAA</font><font color="green"><u>AAGATTCAGTTC</u></font>tgtact<br>ccattgaaaatttacatttcattttttgctgtgtacccatcggtatcagggagctgccccgtccccacccccgctccttctcctcatcatccccctcccc<br>tcatcatcccccttccccacctccaccaagaagagctgattgacagaaagacccagctggtctactcctgtctgaataccatggcccctggaagtcaagt<br>gcatgaggcagctgggtgggaggcggtgctggatggaggtgggtagagaaggatgtcaaactgaatcatcaggaaacttcatttttttcaccccagcttc<br>taagcattttttttcttttctatgcctcaattttttcatcagtaaaatggagctaatgactctttccttcctggctataaga	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	2544	585	NA	intergenic
0	chr2	41826661	41829369	3000047	0	+	H2_F_56; RIP_SVA_chr2_041_01	GGGTAGGCTAACTGCTACAACG	ACCAAACAGGAAaTACCCTGAA	OTHER	SVA	SVA_F	cacttataagtgaacgctaagctataagtacacaaaggcatacggagtgatataatgaattttggagactgagatgggaaggaagggataggagtgtgag<br>ataaaaaaaaaaactacatattgggtacaacatacactgctcaggtgatgggtgcgctaaaatctcataattcaccactatataattcacccatataacc<br>aaaaaccacttgtactccaaaagctatccaaatttttaaaaatattttaaataaaaaattatcctgcatttgtcttatcctttttgcatatgaactgctt<br>taatagattaagagtatttatttgtaccaattttttatttgttagggtaggctaactgctacaacgaatataccccaagatgtgt<font color="green"><u>AAAAACCTCACATGC<br></u></font><font color="red">GCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCGTCCCTCCCTCTCCGTCTCCGTCTCCGTCTCCGTCTCCCTCTCCC<br>CACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAG<br>TGCCTGCGATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGACCGGTCTCCAGCCCCTAACCGCGAG<br>TGATCCGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATC<br>TCGGCTCACTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAG<br>GAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCCGGCCGCCCAGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCCGCCATC<br>CCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCG<br>CCTCTGCCTCACCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTG<br>AGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCG<br>CCCAGCAGCCACCCCATCTGGGAAGTGAGGAGCATCTCCGCCCGGCAGCCACCCCATCCGGGAGGGAGGTGAGGGGGGGTCAGCCCCCGCCCGGCCAGCC<br>GCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCC<br>CGGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGG<br>GGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGTGTCGGCCCCCCGCCCGGCCAGC<br>CGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCACCCCTACTGG<br>GAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGCAAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTG<br>GGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAG<br>GGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCTGCCCCGTCCGCGAGGGAGGTGGGGGGGTCAGCCCCCCACCC<br>GGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGC<br>CCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGG<br>AGGGAGGTGGGGGGTCAGCCCCCCGACCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGG<br>TGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAA<br>CGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAG<br>TAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTG<br>AAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCA<br>TCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTAT<br>CTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAACCTCACATGC</u></font>aattagagtccatttccctctcagataaaaagttcagggtatttcctgtttggttccacagaattgtatggggctt<br>cagaatgatggaggctctgccatcctcaccatatggtattttgtcctagcgtcaatatgttgtaggcaaggaggaaaagggcagatagaattaggtttag<br>gagatttaatggggcagacctgggagggaggcatagctcttcctctcacattccattagctacactgaactttaggagaaactcagaaatgtaatctagc<br>tatatatctcggaaaaagagggaatggattttcatagcatctaagtctttcttcccagaagtcatttaaaattaattattttgaaatcaatttctgacca<br>ttattgggg	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	2834	114	NA	intergenic
0	chr2	48635357	48638371	3000048	0	-	H2_F_76; RIP_SVA_chr2_048_01	GTCTCCAAGTCTATGGGGAGTG	CCACGTATGCGTTTCTACTCAA	OTHER	SVA	SVA_F	gcctcagcctgccgagtagctgggattacaggcatgtgccaccaagcccagctaatttttgtatttttggtagagatggggtttctccatattggtcatg<br>ctggtctcgaactcccgacctcaggtgatccacccacctcagcctcccaaagtgctgggattacaggcatgagccaccgcacctgacagatttttaaaat<br>tctttattaaggtcctatatacaaagcagttataaaagattggcattaactttagtaatgtcttagtctcaaaagcaaacttcagcacacaaaaaataat<br>atttaagtctccaagtctatggggagtgcttgcaaaatacttgtgaactttattgaatttcaaagactaccaaaggctttaac<font color="green"><u>AAAAAATTTTGCACTTA<br></u></font><font color="red">GCCCCTAACCGCGAGTGATCCGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAG<br>TGCAGTGGCGTGATCTCGGCTCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCC<br>CGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTC<br>TGCCCGGCCGCCATCACATCTAGGAAGTGAGGAGCCTCTCTGCTCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGG<br>ATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGG<br>CAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCATCTGGGAAG<br>TGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGG<br>GGTCAGCCCCCCCGCCCGGGCAGCCGTGCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCC<br>TCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAG<br>CCGCCCCGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGCCCGGGCAGCCGTGCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCC<br>GCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGG<br>GGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGG<br>GGGGTCAGCGCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCC<br>AGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAG<br>CCGCCCCGTCTGGGAGTTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGT<br>GGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCGCCCCGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGG<br>GGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGG<br>GGGGTCAGCGCCCCGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGG<br>GGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCGCCCCGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGG<br>GTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGTTGAGGGGCGCCT<br>CTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCC<br>GCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTGTCCAGGAGGGAGGTGGGGGTGTCAGCCCCACGCCCGGCCAGCCGC<br>CTCGTCCGTGAGGGAGGTGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGTGGC<br>CCCGTCCGGTAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGG<br>GGGGTCAGCCCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCACCTCCCCGTCTGGGAGGTGTGCCCAACAGCTCAT<br>TGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGCGGGGAAAAGATTGAGAAATCGGATGGTTGCAGTGTCTGTGTAGA<br>AAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGTCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGC<br>TCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAA<br>GAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTT<br>GTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATAAATA<br>AATAAAAAAAAAAAA</font><font color="green"><u>AAAAAATTTTGCACTTA</u></font>aagtttgagtagaaacgcatacgtgggagccaatgactggatgtgccaactgacattttcgaccttag<br>cctatatgtaaatttacagatctctaagtctcaaccttgggtgcttgagcccctggcaggctaacctctttcctcccaactctgagtccaatttaaagaa<br>gcaaaaggccgggcgcaatggctcacgcctgtaatcctagcactttgggaggccgaggcaggcagatcacctgaggtcaggagttcgaaactagcctggc<br>caacgtggtaaaaccccgtctctattaaaaatacaaaaaattagctgggcatggtggtgcacgcctgtaatcccagctagttgggaggctgaggcaggag<br>aactgcttgaaccag	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	3152	150	NA	intergenic
0	chr2	113867813	113870081	3000049	0	+	H2_F_129; RIP_SVA_chr2_113_01	TTGCTGACTGCTATCAGGGTTA	TCATGTTTGTGGATGGGATaAA	OTHER	SVA	SVA_F	cgttttagtggaatccagatctctaagaaacagatataaaatatttgttcctatccaactttgattactatatttccaactatgttgctgtctgtaagta<br>gagtctgcatacatgtttctggttcatatatgcctagggttccagagcattacatttccatcaaaatgtagatcccaagaatgccagagagggtcaggca<br>gaggatagaacagagtgattttcagatactgcagtaggaaggtggatccacctcttggctggtacttgtaaccatgaagtgtgggaaagtaacgaccaga<br>ttgagtaaatgaccagaaattcaaaactaagccataacaaatttgtctatttctgcttttgctgactgctatcagggttacatc<font color="green"><u>AAAAACAGTATTGCTG<br></u></font><font color="red">GCCACCGCGCCGGCGAGCGCCGCCAGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCAGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCC<br>CAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGATCCCC<br>TCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCT<br>AGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCC<br>GGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGT<br>GAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCAGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCC<br>CCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCC<br>GCCTGGCCAGCCGTGCCGTCCGGGAGGGTGGTGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGC<br>CCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGG<br>GAGGGAGGTAGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGA<br>GGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCC<br>CGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCC<br>GCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCG<br>GGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGGTCAGC<br>CCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCC<br>CCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCC<br>GTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAG<br>GAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGC<br>GGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAA<br>ATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGG<br>CGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAACATGCTGGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACT<br>GCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAA<br>ATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAAACAAAAAA</font><font color="green"><u>AAAAACAGTATTGCTG</u></font>agaccagtgttgtgg<br>agctttaacccttatgttttcttctagtaattttacagttcaggccttctatttaaatcttcatttggagttggtattagtatgtggtgtaagttagggg<br>actaactttatttttcctgtggatattcagttttctcaacaccatttgtagaacagactatcctttaaccattgtatgtccttggcacctttgtcaaaaa<br>taagttgactgtgtgtgggtttatttctgggttttccattttgtttagccaatttgtccatttatatgccactaccatgctatttggattacaattgttt<br>tacaatatgtaataaaattaggtagcatgctgtctctagctttgttctttttgctcaagattattttat	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	2865	687	NA	intergenic
0	chr2	208182741	208185029	3000050	0	+	H2_E_239; RIP_SVA_chr2_208_01	ATACAGAAGGTACTGGGGAAGC	CATGCTTTTTGCCTTAATTTCA	OTHER	SVA	SVA_E	gtgtatcatagataatcctaaaacaatataacaatcatttaacccaaagtcaatgccctttaaatggaatgtatctttttcattatttggttatgaaata<br>tacagaaggtactggggaagcaacaatggaagaggcagaagcattcttggccctcaaggagcttacactctacagggcaatactaccactgaatgagcaa<br>ttacaagtccaatacaaaaggagcttatatgtaggaagctaacctctcaggcagggatgagatttaaaacttttaatgtcatcctatgcgttgttaagga<br>agcagggaaagcttgggaaagaactgcattaagacatttgagcaagggtaaaacagaaggggaaaacctcagctcttgacttgaaat<font color="green"><u>AGAAAACCTATTC<br></u></font><font color="red">CCTCCCTCTCCCTCTCCCTCCCCCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCAAGGCTGGACGGTACTGCTGC<br>CATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCACCGCCACGCCTGACTGGTTTTCGG<br>TTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGA<br>TTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTGCAACCACCTCCCAGCCGCCTGCCT<br>TGGCCTCCCGGAGAGCCGAGATTGCAGCCTCTGCCTGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATGTGA<br>GGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTGGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCA<br>TCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGC<br>CTCTGCTGGGCCGCAGCCCTGTCTGGGAGGTGGGGAGCGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTC<br>TGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCAGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGG<br>TCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCC<br>GCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAA<br>GTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGTCATCCTCCCACCTGGCCAGCTGCCCCATCCGGGAGGGAGGTGGGG<br>GGGTCAGCCCCCCGCCTGGCCAGTCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGAAAGTGAGGAGCCCCTCTGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGGGGGTCGGCCAGCCGCCCGGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTTCCGGCCGGCC<br>GCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGG<br>GGGGACAGCCCCCCGCCCAGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCGTCTGCCCGGCCGTCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCC<br>AGCCGCCCCGTCCGGGAGGGTGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTG<br>GGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCACGATGACAATGGCGGTTTTGTGGAA<br>TAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTA<br>CTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATG<br>GATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGAC<br>ACAAACACTGCGGAAGGCCAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTC<br>CTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAATAAATTAATTAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAACCTAT<br>TC</u></font>aagatttcaggtgctttttttttttttttttttttttttttttgagatggagtctcgctcttgtcccccaggctggagtacaatggtgcaatctcagc<br>tcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgcctgacaccacgcccggctaattttt<br>gtatttttagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatctgcccgcctcggcctcccaaagtggtggga<br>ttacaggcatgagccaccgcatccggccagatttcaggtgcttttaaaaagtaactgaaattttatttttacttaattcctttatttat	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	3027	627	NA	exon:3UTR:FAM119A:NM_145280
0	chr2	223468436	223470915	3000051	0	-	H2_E_256; RIP_SVA_chr2_223_01	AATGTGAAGGTCTCCACTGACC	CTCTTTTGTCCTGGCCTGTTAC	OTHER	SVA	SVA_E	acccacatttttcaaaattctcattgattcttatagagttattttcctacaaaatccagaggagttaacatttctgtatgacgaaacacaactttaaaag<br>aatcaaaaggaaaacaagtgtccaggaaaaaatgctgacaaaatatacaaagagcgcctataaattaaaataaaagtcaagcaacacaaggaaaatgggc<br>acagagtatgaacagggaagccaaaaaagaggaaataaaagaggaagcctgagagttaaacactggttttgataatgtgaaggtctccactgaccttaaa<br>cttgaaaagagcttaagtgttaaggaccaaagctcaaatgaagagggttcaagaaagggcagaaagacagtaagtagaaagagctct<font color="green"><u>AAAGAACAAAGTA<br></u></font><font color="red">GCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCTCCCTCTCCACGGTCTCCCTCTGATGCCGAGCCGAAGCTGGACTGTACTGCTGCGATCTCGGCTCA<br>CTGCAACCTCCATGCCTGAGTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGTCACCACGCCTGACTGGTTTTCGTTTTTTTTTGGTG<br>GAGACGGGGTTTTGCTGTGTTGGCCGGGCCGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATGGCAGACGGAG<br>TCTCGTTCACTCAGTGCTCAATGGTGCCAAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAA<br>GAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATATGAGGAGCCCCTCTG<br>CCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGTCCGCCATCCCATCTAGGAAGCGAGGAGCGCCACTTCCCCGCCGCCATCCCATCTAGGA<br>AGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGAGGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCCCGGCC<br>GCCCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCAGCAGCCACCCCGTCTGGGAAGTGAGG<br>AGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCT<br>GCCCGGCCGCCCCCACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCGGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGC<br>CCAGTCCGGGAGGGGGGAGGGGGGTCAGCCCCCTGCCTGGCCAGCCGCCCGGTCCGGGAGGGAGGTGGGGATGTCGGCCCCCCGCCCGGCCAGCCGCCCC<br>GTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGA<br>GGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCT<br>GCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCCGCCCGGCCAGCCG<br>CCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCTCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCC<br>CCGTCCGGGAGGGGGGAGGGGGAGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCC<br>GTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAG<br>GAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGCGGGGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGAGGGGTCAGCAC<br>CCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCC<br>GCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGG<br>TTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATT<br>TTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCA<br>GGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCCTTAAGAGTCAGCACCACTCCCTAATCTTAAGT<br>ACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTAT<br>TGTCCTATGACCCTGCCAAATCCCCTTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAACAAAGTA</u></font>atggtaa<br>caggccaggacaaaagaggttcttttgtttttaacataaatagtagagcttgtctgcagactgatagctatgaaccagcagaggaaagtattatgcagaa<br>gagagccacacctctggaggaggagagagggtgggagaaacagggacacagatgtgcaggaataggagcttgcagaagattttcttctgggtgcttctat<br>tttctcagagtaataagcaaaatcattggatgtgagggaggcagaaaggaaggtattagaaaattaaggagaaagtataaaatagtcatctaggagagtg<br>gcagaatgaatggtcatggaaaaggaatagcaaaggcaggctggagtatgaaataataagaccacagtgttagaacgata	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	2645	155	NA	intron:ACSL3:NM:004457:2/17
0	chr5	32243463	32245520	3000052	0	+	H5_F_9; RIP_SVA_chr5_032_01	TGTCTGCCCTACCGAGTAATTT	GCTCTATTCAGCTGCATTTCCT	OTHER	SVA	SVA_F	gtcaaggtttggtgtggggctgtagaccaggtttctggctcactgttcaaatgggggaggatccatttctgagctcattcgtgcggccattgggaggcct<br>gaggccctcaatggctgtcagccggagacatcactttcatgccacattgacttctccatagggcagctctacaaaatgacagcttccctttctcaaacca<br>agggctccacaaaagggaaagaggtatcacagtcttctgtgatctaatcacttgcgccatgtcctgtttgttggaagcaagtgactaggttcacccatac<br>acaaggagagaagattacacagccatgaaccctgggagccatgttagaggctgtctgccctaccgagtaatttttttcttcctgtt<font color="green"><u>AATTAGCATTTTTG<br></u></font><font color="red">GAGCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCGCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCC<br>ATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGC<br>CTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCT<br>GGGATGTGAGGAGCGCCTCTGCCCTGCCGAGACCCCGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCC<br>TGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGG<br>AAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTG<br>GGGGGGTCAGCCCCCCGCCCGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGC<br>GCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGC<br>CAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCA<br>GCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGACCCGTCCGGGAGGGAGG<br>TGGGGGTGTCGGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCTCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTG<br>GTGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCC<br>CGGCCAGCCGCCCGGTCCGGGAGGGAGGTGGGGGTGTCGGCCCCCCGCCCGGCCAGCCGCCCGTCCGGGAGGGAGGTGGGGGGGGGGTCAGCCCCCCTGC<br>CCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCGCTCTGCCCGGCCAGCCGCCCCGTCCGGG<br>AGGGAGGTGGTGGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAG<br>CCCTTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCATGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGG<br>AAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATT<br>CCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGG<br>TGCAAGATGTGCTTGGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGTG<br>GAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATC<br>CCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAA</font><font color="green"><u>AATTAGCATTTTTG</u></font>ccatcctggtttgttttttctttgatgc<br>agggtcttgctctgttgcccagctggagtgcaggggcgtgatcacagcttactgcagccttgacctcccgggctcaagcaatcctcctgcctcagcctcc<br>tgagtagctggttctgtaggcatgcaccactttgcccagctattttttaaattttttgtagagatgagatctccctgtgttgcccagactggtctcaaac<br>tcccgggtcaggtgatcctcctcccttgacctctgaaagttctgggattacaggtgtgagccaccacgcctggtctccatcctgttgtaataaaatgtta<br>taataaaaagaaaccccatctctactaaaaatacatacgtggaggtatgtgttcaggt	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	2696	620	NA	intergenic
0	chr5	176320205	176322779	3000053	0	+	H5_F_171; RIP_SVA_chr5_176_01	CATGAAAGCATGGCAGAAATAA	TAACTGGTTTTTGGCATCACTG	OTHER	SVA	SVA_F	atagttggtcaaaatcgtagcgctgagacttgcctgactctaaaatccacacgctaaaaactattatattgcttactcagatgatcctcttcctaatcat<br>ttcaatgtagaatcccaagaacgtcttcatttcaatacattattttaatttagaaatttatacctcaatggcagtaatctgaacataaagtgaggttctt<br>ccagaatatgaacacaggatagcaaaataagcaaataaaatttagactacccaaatgtaatcaaggtgaacatgaaagcatggcagaaataaaaatttaa<br>ggaagctatggcctaatcaagacatcttcttcctggagaaataatatgttaataaggaagggatggtttgcattgaatctt<font color="green"><u>AAAAAAAAAAAAAAATTCA<br></u></font><font color="red">GCCCTCTCTCCCTCTCCCCCTCCCCCTCCCCCTCCGTCTCCGTCTCCGTCTCCGTCTCCGTCTCCGTCTCCCCACGGTCTCCCTCTCATGCGGAGCCGAA<br>GCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCACGCGCCGCCA<br>CGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCGAGTGATCCGCCAACCTCGGCCTCCCGAGGT<br>GCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTACAACCTCCACCTCCCAG<br>CCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTC<br>TGGGATGTGAGGAGCCCCTCTGCTCGGCTGCCCAGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTC<br>CCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCACCGCCCCATCTGGGATG<br>TGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAA<br>CCACCCCGTCTGAGAAGTGAGGAGCCCCCCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCAGCAGCCACCCCATCTGGGAAGTGA<br>GGAGCATCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGAGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGT<br>CAGCCCCCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCGGTCCGGGAGGTGAGGGGCGCCTCTG<br>CCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCC<br>CCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGG<br>GATCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGTGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGG<br>TCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGC<br>TGCCCCGTCCGCGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGC<br>CGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGCGAGGGAGGTG<br>GGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCGCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGG<br>GCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGACCGGC<br>CAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGCCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTAC<br>TGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGG<br>AATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTG<br>CACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAA<br>TGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGG<br>ACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCAT<br>GACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAAAAAAAATTCA</u></font>aagaat<br>tattatcaaagggtatttttaatacttaaaagtgaaaatggggctgggcagagtggctcacatctgtaaccccagaactttgggaggccaaggggggcgg<br>atgccttgaggccagcagttcaagaccagactggccaacatcgtgaaaccccatctctacaaaaaatacaaaaattagccaggcatggtggtgcatgcct<br>gtgaccccagctactcaggaggctgaagcaggagaatcacttgaacccgggaggtggaggttgcagtgagctgagatcgtgtcactgcactccagcctgg<br>gtgacagagtgaaactccatctttaaaaaaaaaaaaaaaaaagtgaaaatgaatagataaatcatctggtcatca	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	3553	950	NA	intron:UIMC1:NM:016290:6/15
0	chr5	43122169	43125053	3000054	0	-	H5_E_27; RIP_SVA_chr5_043_01	AATTGAGGTTAGATAGACCTGTTCA	GCATGAGGCAAACTCTCTTTTT	OTHER	SVA	SVA_E	gtaggtgcacacaaccataattgggtaattaaatatttttttttgtggagacgggatctcagtttattacccaagctggtcttgaactcctggactcaag<br>ggatcctcctgcctcggcctcccaaagtgctgggattacaggtgtgagctgccacacctagcttagtttagatgtttgttttaaagttttaaatttttaa<br>tagttaataacagataaaactaaatttaaaaaattataaaaggttataaaaggtttatacaaatcttatcttctgtggtcaaaactaattgaggttagat<br>agacctgttcataattttactaaaattagctttagcattaataatatacggatatagagatacaaattttttaacaaaatttccatat<font color="green"><u>AAGAGATAACAA<br></u></font><font color="red">GCTCTCTAACAAGCCCTCTCCCCCTCCCCCTCCCCCTCCCCCTCCCTCTCGTCTCCCTCTCCGTCTCCCTCTCCCCGGTCTCCTTCCACGGTCTCCCTCT<br>GATGCCGAGCCGAAGCTGGACTGTACTGCTGCGATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCTGAGTGCCTGCGATTGCA<br>GGCGCGCGTCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTGGTGGAGACGGGGTTTTGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTG<br>ATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCAAGGCTGGAGTGCAGTGGCGTGATCTC<br>GGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCG<br>TCTCTGCCTGGCCGCCCATCGTCTGGGATATGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATC<br>TAGGAAGCGAGGAGCGCCACTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGAGGTGGGGAGCACCTCT<br>GCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAG<br>TGAGGAGCCCCTCCGTCCAGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCAGCAGCCACCCCGTCCAGGAGGGAGGTGGGGGGGGTCAGCCC<br>CCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGTCGCCCCGTC<br>CAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCG<br>GGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCACCCCTACTGGGAAGTGAGGAGCC<br>CCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCG<br>GCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCCGGCCAGCCGCCCAGTC<br>CGGGAGGGAGGTGGGGGGTCAGCCCCTCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGG<br>GAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAGGTGAGGAGCCCCTCTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCC<br>CCCGCCCAGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGAGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCC<br>CGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCG<br>CCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGCGGCGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGG<br>TGGAGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCT<br>GGCCAGCCGCCCCGTCCGGGAGGGTGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCT<br>ACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCACTGGGGATGGGCCATGATGACAATGGCGGTTTTGT<br>GGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTC<br>TGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTA<br>AATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAG<br>GGACACAAACACTGCGGAAGGCAGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCT<br>ATGACCCTGCCAAATCCCCTTCTGCGAGAAACACCCAAGAATGATCAATTAAAAAAAAAAAAAAACAAAACAAATATTTACGTATGATAATGAGAAGAAC<br>ACTGTCCTAGATGGCTGAAATGCTAATAGTCTTTAATTCACTATTTTCTTATTCTGACTGTTGCAAAGATTTGTAGTTTTATTGATGATTCTCACTCATG<br>TTCTAAAATAGGAGTTGGCAAACTATTGGCTGCCTGTGTTTATAAATAAAGTTTTCCTAGAACACAACAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGATAACAA</u></font>atg<br>caagattttttgttcaccttttaaatacattgcaaaagaaaaaagagagtttgcctcatgctgtctttgtctttttgactgtttagagaactgagtctcc<br>tctctatcaaagagtaagggtttttgctttttgaaatctttgaattatcactttggctaaatgagtaacttatttgtgtaagataaggattacttatgtg<br>taattctattttgatccagggtttgaaacctttcttattttcctatcaagtgttttaagcctttaatagttgacaaacttctcaaaatcaaattttatat<br>tctaaaattaagtctttttgacctgaaactaacttttaattttggtatataaaaatcatatggaaaacactgtcaaatagaagtg	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	3075	180	NA	intergenic
0	chr6	4982248	4984167	3000055	0	-	H6_E_1; RIP_SVA_chr6_004_01	TCCGGTAAGCTTCATACCAGTT	ATTCAAATCCCTCTGCAAAGAA	OTHER	SVA	SVA_E	acttaaaacagtgcctggaatatagttggttctcaataaatattaattgagtaaatgccatgttacatattaccttgctttgaaattctaagacaaaaca<br>atactaatagcttttaagtaatggtggcttccggtaagcttcataccagtttctcttatagtgttacatatttatttttaaagcaacaactcatttattt<br>agattaatgaaaaaaaaatgaaaataaatactgtattgtgggcccacatttcagtgttccagtgatatcaggcaaccttaaattttagccataaataatt<br>ttgataaaagaaacatgtgtaaactacccataaaccaggtgtggccgttcatccagactttgcaggattaacccaaacatttt<font color="green"><u>AAAAATACAAGCTAAAG<br></u></font><font color="red">CTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCTCTCCCTCCACGGTCTCCTTCCGCGGTCTCCCTCTGATGCCGAGCCAAGGCTG<br>GACGGTGCTGCTGCCATCTCGGCTCGCTGCAGCCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGGGTGCCTGCGCACACCGCCACGCCTGACTGGTTT<br>TCGGTTTTTTTTTGGTGGAGACGGGGTTTTGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACTGCCAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGC<br>CGGGATTGCGGACGGAGTCTCGTTCACTCGGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTCCACCTCCCAGCC<br>GCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCAGCCGCCACCCCGTCTGGGAAGTGGGGAGCGTCTCTGCCTGGCCCCCCATCGTCTG<br>GGATACGGGGAGCCTCTCTGCCTGGCTGCCCAGTCTGGAAGGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCCTCTTCCC<br>CGCCGCCATCCCATCTAGGAAGTGAGGAGCATCTCTGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCCCATCTAGGA<br>AGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCTCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCC<br>GCAACCCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGG<br>AGCCCCTCCGTCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGCGGTCAGCCCCCCG<br>CCCGGCCAGCGGCCCCGTCCGGGAGGTGAGGGGCGCCTTTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGG<br>GAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCC<br>CTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCGGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCC<br>CCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGGACCCCGTCT<br>GGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCG<br>GATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTG<br>TGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATG<br>CTTGAAGGCAGCATGCTCGTTAAGAGTCATCGCCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGA<br>AAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATG<br>ATCAATAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATACAAGCTAAAG</u></font>agacaagacttctcaatactggggcagtgatgtgcttcagagacctagataacaggggacttt<br>gaagggcaccctcctaggaaggacctcctaacttctcaggcatcagtttctgcttctgttgactcagaaaggagctcccagtggtataacttgagcgtat<br>cccgtgcccgcaggtctcctgagaaagtggactgtgtcttctcactgtccgggcccaaggagaagatgttgggctgaagggaagctcatttagagggagg<br>cctttatctcaggagagaaattgatgcaagatctcagtccagcaggaaggagagtgactatctgaagcaatcggatgctttctttgcagagggatttgaa<br>tttgaaactgtagagaccat	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	2572	640	NA	intergenic
0	chr6	125750465	125753051	3000056	0	-	H6_E_146; RIP_SVA_chr6_125_01	TTAACAGCACGTAGCACAGTGA	TTTCTCCCTTCCCATTTTTGTA	OTHER	SVA	SVA_E	taataataatgccttctcatcagaaataatggaaatagaataatgaattaccatttttttcttaaatgaaaaaaaaaaaagactgtgaacctaacattct<br>gtaaccagttaaaatatccaccaaaaatgaagttgaaataaagagattatcagactaaccagatctgagagaatacattgccaggagacttcaactacaa<br>gaagtgtataaagaaggtcttcaggtgaaggataatgatatatgaaaacttgattttacacaaaggaataaagggtgccagatacggttagtatacaggc<br>aaatctaaaattctttttcatactgtaatttcttcaaaaattaattgattctttaaagcagaaataacaaaatatcatggagtt<font color="green"><u>TAAAATATACATAGCA<br></u></font><font color="red">GCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCC<br>CTCTCATGCCGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCGCTGCGGCCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGAT<br>TGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTGGTGGAGATGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGA<br>GTGATCCGCCAGCCTCGGCCTCCCGAGGTGCTGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGAT<br>CTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCGGCCACCCCGTCTGGGAAGTGAGGA<br>GCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGGAGCCCCTCTGCCTGGCTGCCCAGTGTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCC<br>ATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACC<br>TCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCTCCGTCTGAG<br>AAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCTGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCC<br>CGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCC<br>TACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCCGGGGGGGGGGGGTCGGCCAGCCGCCCCGGCCGGGAGGTGAGGG<br>GCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAACCCCCCGCCCGG<br>CCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACT<br>GGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGGGG<br>AGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGG<br>GCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGG<br>CCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTAC<br>TGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGAACAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAG<br>GGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGCGGTGGGGGGGTCAGCCCCCCGCCC<br>GGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCCGGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCGGTCTGGGAGG<br>TGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGT<br>TGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCT<br>TATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAA<br>GGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCA<br>GAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAAT<br>AAAAATAAAAAATAAAAAATAAATAAATAAATAAATAAATAAATAAAGAAAAAAAAAATAAATAAATAAAAAAAAAGAAAAAAAAAA</font><font color="green"><u>TAAAATATACATA<br>GCA</u></font>aacaataatacaaaaatgggaagggagaaaatggaagtatactattgtaagattcttaccatatacataaattagtatgatactgggggtagactct<br>gatagattaaaaattcatgttgtaaattgtaaagcaactgctaataaaatgaaaacaaatctaacagaagacaagaaataactaagatcagagcagaact<br>gaaggagacagagacacgaaaaaccctcccaaaaatcaatgaatccaggagctggttttttgaaaagctcaacaaaatagatagaccataaaaatcctag<br>aagaaaacctgggcaataccattcaggacatgggcatgggcaaagacttcatgtctaaaacaccaaaagcatggcaacaaaagccag	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	3196	580	NA	intergenic
0	chr7	25023987	25026378	3000057	0	+	H7_F_35; RIP_SVA_chr7_024_01	TTTAGGCCCAAATATGCAAAA	ATCAATgTCTTCATCTGCTTGG	OTHER	SVA	SVA_F	tacatgaatcaaagagctaaatgtaaagaagaaaaatgaaatgaaataaaaaacaaaataaaaataaaaagccacaacaattagaagaaaatatattgtt<br>tccaacagctagataagaaaagactttttaaacctaaagtaaatgcaaaaaaagtcacaaaaaatatgattggacaatcttaatagctattataaatagt<br>tataaggcaaacaagttacaaaaaatatttaggcccaaatatgcaaaatttttcataatatagaaacatttaatagtaatcaataacaaaaacttatttt<br>ataggaaacaagtactttcatatcctgttggcagaactgtaaatttattcagccttcttggaaagctaattaggaatatgcat<font color="green"><u>AAGAAATATATAAAGTC<br></u></font><font color="red">GGCGACCGACCGCAGCCGCCGCCGCCCGACCGCCGGGAGGATGGAGTTCAGCGGGCAGCGGAGCTGTCTCAGTCTTTGCCGCCGCGCCGGCGAGCGCCGC<br>CCGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTT<br>TGCAGCCTCTGCCCGGCTGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCC<br>CAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCGATCACATCTAGGAAGTGAGGAGC<br>GTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGT<br>CTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCG<br>ACCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCG<br>GGAGGGAGGTGGGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGTGCCGTCCG<br>GGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCC<br>CCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTAGGGGGGTCAGCC<br>CCCCACCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGAGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAG<br>CCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCAGGAGGGAGGTGGGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCG<br>TCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGT<br>CGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGTGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTTGGGGGGGGT<br>CGGCCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCC<br>GCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGTGGTCAGCCCCCCCGCCCAGCCAGC<br>CGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTG<br>GGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGG<br>CGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCGCCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACAGGCCA<br>GGATGACAATGGCGGCTTTGCGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAATAGACAT<br>GGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATG<br>TGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTATTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAA<br>TCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGA<br>CCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAA</font><font color="green"><u>AAGAAATA<br>TATAAAGTC</u></font>tatgttctttgacccactaattccatctacatgactctatcttaaggtgataatgataaaataaggaaagaagttatgacagtatacaaaa<br>ctgtgtataaaactatgtacatacaatataatcgaaactattctaaatacacttagaaaaaaaaaagactggaaggaaatataccacgaaagattgttca<br>tccaacaagcttttatcgttcagatgggctcaacatttgggtctcccgcaaattcctgtggtgaatctctaacccccaacgtgatggtattagtgggtga<br>ggcctttgcaaagtaatcaagtttagatgtggtcctgagggtgaagccctcatgatagaattagtacccctgtaagagatgaaagctctctc	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	3164	760	NA	intergenic
0	chr7	137946997	137947748	3000058	0	+	H7_F_148; RIP_SVA_chr7_137_01	CATGCTTCAAGAGAACATCAGG	TCTGGTTGCTTGCAGAGAGTAA	OTHER	SVA	SVA_F	aggttgtagtgggctgagatcgcaccattgcactccagcctaggcgacagagcaagactctgtctcaaaaacccccaaccccaaaacaaaacaaaacaaa<br>acaaaacaaaacaaaaaccaaaccaatccttacccctttaactagtgcccagctctgttgatctttgacaacgtacagtttctcaataagttcatggctt<br>attggaaatcacttctgaaaaaattaaatggatgtaatttgattcccattaacttgtgaagttctctgtcatcttacgagctgattttttttccccatgc<br>ttcaagagaacatcaggcatttatataggacaaaaagatcatctttcggctgtaaccattaaattagggtttttttgtgaccctt<font color="green"><u>GAAAGATAAGACTTT<br></u></font><font color="red">GGTTAAAAGATTGAAAATTAAAGCTAGATAGGAGGAATAAGTTCTAATGCTCTATACCATTATGGTATGACAATAGTTAATAATATATAGCTTCGACAAC<br>CTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTG<br>AGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGCGGGGAAAGGATTGGGAAATCGGATGGTTGCCGGGTCTGTGTAGAAA<br>GAGGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGTCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTC<br>TCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGATTGAAGGCAGCATGCTCGTTAAGA<br>GTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGT<br>TTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAA<br>AAAAAAAAAAAATAAAATAAAAAATAAAAAAAAAATAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGATAAGACTTT</u></font>atctttcatccttatccaagccagacttaattt<br>tttttttttttttttggtgagagagagaaagtctcgctctatcgcccaggctggagtatagtggtgtgatcttagctcactgcacctccgcctcccaggt<br>tctaagggattctcctgcctcagcctcctgagtagctgggattacaggtgcctgccaccatgcccagctaatattgtatttttagtagaaactggttttc<br>accatgttggccaggctggtctcgaactcctgacctcagatgatcaatcagcctcggcctcccaaagtgctgggattacaggcatgagccaccgcgcctg<br>gccagaaatgtaaattttttacgcagtcaggtttaccatgttttcctatatc	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	1401	630	NA	intron:SVOPL:NM:174959:10/12
0	chr7	20673814	20675891	3000059	0	+	H7_E_27; RIP_SVA_chr7_020_01	GTGCACAGAAGGATACATGGAA	GCCTATGCTGATACCACTCCTC	OTHER	SVA	SVA_E	atgacacagatgaaatgcttgataagtaaataaatatgagaagagatatatattaaaacacctgtgaagtgaatcccctgtgaagaaaagaaggtctcta<br>acaatataaacctgtatcaggaaaccctgtgattctgattctgtgcacagaaggatacatggaattctcagaccttttctagttgcaaccttttaattgt<br>ttgactttatattctgtcctctcaaattctccttagactgtgacgtgttaatgctctcttttatattttctaattaaattccatacacattaatttgaga<br>actgttggagagtattgtgaaatcattgagctaatgggtcacatcacgtggcttcatgaataagatttgagatctgtttgcttttg<font color="green"><u>GAAAATAACATTCG<br></u></font><font color="red">CCTCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCTCTGCCTCTGCCTCTGCCTCGTCTCCCTCTGA<br>TGCCGAGCCAAACCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGG<br>CGCACGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTGGTGGAGACGGGGTTTTGCTCTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGAT<br>CCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGC<br>TCGCTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTTTGCCCAGCCGCCACCCCGTCTGGGAAGTGAGGAGCG<br>TCTCTGCCTGGCCCCCCATCGTCTGGGATATGAGGAGCCTCTCTGCCTGGCTGCACAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATC<br>TAGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCT<br>GCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAG<br>CGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAGCCACCCCGTCTGGGAAATGAGGAGCGTCTCCGCCCGG<br>CAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGACTCCTCTGCCCGGCCGCCCC<br>TACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGG<br>TGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCC<br>GCCCAGCCGGCCGCCCCGTCCGGGAGGTGTGGGGCGCCTCTGCCCGGCCGCCCCTACTAGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGG<br>GAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCC<br>CTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGATGGTGGGGGGGGTCAGCCCCCCACCCGGCCAGCTGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCG<br>GCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGG<br>CGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTT<br>CATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCA<br>CTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTC<br>AAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCAC<br>TATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATAACATTCG</u></font>taactttg<br>aggaaacagaataaatagagatttattaaataaatatgagccagtaggctaggtgcctgagtgtttttgccttcgcggttgtcaggtttctaatacatac<br>caacccaacaacagtttctgggactctcttttaaagggctgtaggcaagtcccaggtctccaagacccagaatagaattcaaacttgaagtgtgaaagag<br>aggagtggtatcagcataggctgaatatcttacctgtaaaaaggaagacaaatcagacgaactcaaattgagatattctacaaaacatctaaccagtgtt<br>ctttaaaactatcaagtttatcaaaaacaaggacaatctgagagactgtaacagccaagaggagcctaaggcgacatg	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	2579	480	NA	intron:ABCB5:NM:178559:5/19
0	chr7	65495095	65497539	3000060	0	-	H7_E_82; RIP_SVA_chr7_065_01	TTCTGGAAATACCATCTTTGGA	ACAGAGGATTGGCGTAATGACT	OTHER	SVA	SVA_E	tactgggctcaagcagtcctcccacctcagcctctgaaagtgctggaattataagcagacagccaccatgcctgaaaacttgacaatttacatcaagtgt<br>aataagaatgctcatgccctgtgactcacagtaatctcacttctggaaataccatctttggatataattcaacctaaacaaaaggtcatatgtacacagt<br>gaaaatccggatgtaatttttttctttttaaaaacatatggaatgattcacaaatttgcatgtcattcttgcacagaggccatgccaatctatcgttcca<br>actttagtatatgtgctactgaagcaaacatgagtaatttaagataaagtggttaagtggaataaggaagagttatggggaatt<font color="green"><u>TAAAAATTTATGGTAT<br></u></font><font color="red">ACTCCCTCTCCCTCTCCCTCTCCCCCTCCCCCTCCCCCTCCCCCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCAAAGCTGGACGGTACTGCT<br>GCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTC<br>GTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGG<br>GATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGC<br>CTTGGCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCTGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATAT<br>GAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGCCTCTTCCCCGCCTCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCGCGGCTGC<br>CCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGC<br>GTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCG<br>TCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGT<br>GAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGTGGGGGGTCGGCC<br>AGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCTGCCCCTACTGGGAAGTGAGGACCCCTCT<br>GCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCTGCC<br>CGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCG<br>GCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTA<br>CTGGAAAGTGAGGAGCTCCTCTGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGCGGGCGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGAGGGG<br>GTCAGCCCCCCTTCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCC<br>GCCCCGTCCGGGAGGGAGGTAGGGGGGACAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAA<br>GTGAGGAGCCGCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGTGGGGGGTCAGCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCT<br>TCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGAT<br>GACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGA<br>GACTTTTCATTTTGCTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCT<br>GCGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTGGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCC<br>TAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTT<br>CCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAATAAAATAAAATAAAATAAAATA<br>AAAAGAAATCCAATTGCTGGAAAAAAAAAAAATAAAAAAAAAAAA</font><font color="green"><u>TAAAAATTTATGGTAT</u></font>ttataggcacctagtaacggctcagtaaatattagctgc<br>tacttttattatttttatggtaattccactcaattaaaaactgtcattaaaaattaccattgtcatggaacataatgtatcctacagtataattgtaaaa<br>acagatacaatttgtcccttggtatatgggggggattagttccagctcccccatttctgtgtataccaaaatccacccatacccactgcagcctagactt<br>ttcaggctcaagggatcttcccaccccagactccaaagtagccggaactataggtgggcaccaccaccacatctggctaatttaaaaaaattttttggta<br>gacaacagggtctcactatgttgcccaggctggtctccaactcct	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	3250	800	NA	intron:NCRNA00174:NR:026873:3/5
0	chr7	151912637	151915238	3000061	0	-	H7_E_171; RIP_SVA_chr7_151_01	GAATAGAAGGGTGCTTCCTCAA	TTGATTTCtTGCAGCAATGTTC	OTHER	SVA	SVA_E	tcaacctgaaaagggcatctatgaaaaacatacaactgtcatcatacttcacagtaagagagtgaatgctttcccactgaggtcaggaacaaggcaagga<br>tgcccactctcaccacttctattcaacagtgccctggatgctccaatggagcaataaggcctaaaaaataaatcaataaataaaagtaaggaagtcataa<br>aacaagggaaaaagtaaaactatctctactcacagataacataatcagctgtgtggaaaatctgatgaatctacaaaaaggctaattagcaagagtggag<br>gattcaatatcagtatacaaaaacaactatttctacattcaaacaatgaacaattggaatttgaaattttaaaaataacataatagaat<font color="green"><u>TAAAACATGTG<br></u></font><font color="red">GGGTCTCCCTCTGATGCCGAGCCGAGGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAGCCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTG<br>CCTGCGATTGCGGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCT<br>AGCCGCGAGTGATCCGCCGGCCTCGGCCTCCCGAGGTGCCGGGATTGCGGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGT<br>GGCGTGATCTTGGCTCGCTGCAACCACCTCCCAGCCACCTGCCTTGGCCTCCCGGAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGA<br>AGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCC<br>GCCATCCCATCTGGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTTTGAGATGTGG<br>GGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAGCCCTGTCTGGGAGGTGGGGAGCGTCTCTGCCCGGCCGCTC<br>CGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCG<br>TCTCCGCCCAGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCG<br>GCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGGCGCCCCATCCGGGAGGGAGGCGGCGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGG<br>AGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTG<br>CCCGGCCAGACGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCC<br>GGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCT<br>ACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGTCATCCCCCCACCTGGCCAGCCGCCCCATCTGGGAGGG<br>AGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGA<br>GGTGGGGGGATCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGAAAGTGAGGAGCCCCTCTGC<br>CCGGCCAGCCACCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGGTTCGGCCCAGCCGCCCCTTCCGGGAGGAGGTGGGGGGGGTCAGCCCCCCTTCCGGC<br>CGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAG<br>GTGGGGGGGACAGCCCCCCGCCCAGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGTCCCTACTGGGAAGTGAGGAGCCCCTCTGCC<br>TGGCCAGCCGCCCCGTCCGGGAGGGTGGTGGGGGGGTCAGCTCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCC<br>TACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTG<br>TGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTCTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTT<br>CTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGAACACTCAGGGTT<br>AAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCA<br>GGGACACAAACACTGCGGAAGGCCAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTA<br>TTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAAAATAAATTAAAAAAAAAAATAAATAAATAAAA<br>AA</font><font color="green"><u>TAAAACATGTG</u></font>aaacacttaggcataaatctgacaaaggatgaacaaaggatatacactgaaaactaatagaacattgctgcaagaaatcaaaggcct<br>aaataaatggagaaatatatatattttttattcagttttttatttttattttttcctttatttttgtagagacagtgttgcctaggctggtctcgaactc<br>ctggcctccagtgatcctcctgcctcagcctcccaaagtgctgggattacaggtatgagccaccatgcccagacaagaaatatatttattcatcaattag<br>aagactcaatggccaggcacagtggctcatgcctgtaatcctagcactttgggagggtgacgtgggtggatcacccaaggtcaggagttcaagaccagcc<br>tg	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	3112	500	NA	intergenic
0	chr8	43152895	43155536	3000062	0	-	H8_E_35; RIP_SVA_chr8_043_01	TTGTGTCCTCTTCTGCTAACGA	CAAGAGCGATTGAAGGTTTTCT	OTHER	SVA	SVA_E	acaaaccctaaaatgaatcctactggaagcagtggctccctttttggagatccaccaagtccacattcatatgaaacaccatctagaagtgacctccacc<br>tcttgctagtgcctattaaagtacatattgcctgagggctccatttggccattgtctagatgtttgtgtcctcttctgctaacgacagttgcaaggccct<br>tgaggacagtgactagtgccctcccgactctgatactcattcaaagcagagggctcacaagccttccctcagctctgctgtccctgcgcaccactaaact<br>aatgacaaagatattactccttccagaaacccagctgccatacaagtgccagtgaaggtggattcgtgaactgccgcacactatc<font color="green"><u>GAAAGCTGATGAAAT<br></u></font><font color="red">GCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTC<br>TCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCAAGGCTGGACGGTACTGCTGC<br>CATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCACCGCCACGCCTGACTGGTTTTCGG<br>TTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGA<br>TTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTGCAACCACCTCCCAGCCGCCTGCCT<br>TGGCCTCCCGGAGAGCCGAGATTGCAGCCTCTGCCCAGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATGTGA<br>GGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTGGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCA<br>TCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGTGC<br>CTCTGCTGGGCCGCAGCCCTGTCTGGGAGGTGGGGAGCGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTC<br>TGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAATGAGGAGCGTCTCCGCCCAGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGG<br>TCAGCCCCCCGCCCGGCCAGCCACCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCC<br>GCCCCATCCGGGAGGGAGGCGGTGGGGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGT<br>CTGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGACGCCCCGTCCAGGAGGGAGGTGGGGGGGTC<br>AGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGATCAGC<br>CCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCC<br>GCCCGGGAGGGAGGTGGGGGGGTCATCCCCCCACCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCCCCGT<br>CCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGAAAGTGAGGAGCCCCTCTGTCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGTGGGGGG<br>GGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTTCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCG<br>CCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGACAGCCCCCCGCCCAGCCAGCCGCCCTATCCAGG<br>AGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGTGGGGGGGTCAGCCC<br>CCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCT<br>GGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCG<br>GATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTG<br>TGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGTGGTGCAAGATGTGCTTTGTTAAACAGATG<br>CTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCAAGGCCGCAGGGTCCTCTGC<br>CTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCAACACCCAAGAATGATCAA<br>TAAAAAATAAATAAATAAATTTAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGCTGATGAAAT</u></font>cacattagcagggggcaaagttggagaccaaggcggcctggtc<br>tggtccctgctgtgcctctcactacactcagataatccagagaaaaccttcaatcgctcttggcctcagacttttcctctgcacaagagaagggtttgag<br>tagtctcagaggctcctcccaggtctaaaattcaaaaataataataataatgctcacagttagacaaccattgtatatactttcctaatgattattctat<br>ttgcaggcacctgagatggaggaattgcatttctctcaaattacaacatatagtttccatatttcaacctgaatatatataacagagggaaaaagtactt<br>acatggaccaaggcaataattgggattcacaatgataattcc	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	2999	350	NA	intron:HGSNAT:NM:152419:10/18
0	chr8	52608591	52610856	3000063	0	+	H8_E_45; RIP_SVA_chr8_052_01	CCACAACTCTGGCTTAATGTGA	CAGTAAAAGAGAGCGAATGCAG	OTHER	SVA	SVA_E	caacttctgaatcagaatcttcttttaaaaaatatcaccaagtattcatatgctgtttatttatttatatttatttacttttttattttttgaggcagag<br>tcttgccctgtcacccaggctggagcacagtggcgcaatctcagctcactgcaacctctgcctcctgggttcaagtgattctcctgccttagcctccaga<br>gtagctaggatcacaggcatgcaccaccacgcctggctaatttttgtatttttagtagacacagggtttcaccatgttggccaggctggtcttgaactcc<br>tgacctcaggtgatccacctgcttcggcctcccaaaatgttgggattacagtcatgagccactgtgcccagcctcatacactgtt<font color="green"><u>TAAAGTTTGAGAAGA<br></u></font><font color="red">CCTCTCCCTCCCCCTCCCCCTCCCCCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGGCT<br>CACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGGACGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTGGTGGAGACGG<br>GGTTTTGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTT<br>CACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCCCCTAAAGTGC<br>CAAGATTGCAGCCTCTGCCCAGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCCCCCATCGTCTGGGATACGAGGAGCCTCTCTGCCTG<br>GCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTG<br>AGGCGTGTCTCTGCCCGGCCGCCCATGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCACAAC<br>CCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTAAGGAAACCCTCCGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCC<br>CTCCGTCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTACGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCGCCAGGC<br>CAGCCGCCCAGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGA<br>GGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGAGGTGGGGGGATCAGCCCCCACCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGG<br>GGGGGTCAGCCCGCCCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGGGGGGATCAGCCCCCACTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCT<br>GCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCC<br>CCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCC<br>GTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTAGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAG<br>CCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCACCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCC<br>CGTCCGGGAGGGTGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGA<br>GGAGCCTCTCTGCCCGGCCAGGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGG<br>CGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAA<br>AATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGG<br>GCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACAC<br>TGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCA<br>AATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAATAAATAAATAAATAAATAAAAA</font><font color="green"><u>TAAAGTTTGAGAAGA</u></font>actggtatggacttctctt<br>ttcttctttctttttctcctttctcccatctttcctctcttattttccttaaaaagaaaagaatattccttagtccttatagaatctcacaagacaggta<br>tagtggagatttgctcttgcccccctccctgcattcgctctcttttactgtgactacagttcttaccacgtttccagcttctgtgatctgtgtaaagctg<br>accccagccctggacttgggggatggaacaagtgattaagttcagtgcaaccagagcatgtggacccctggccatggtgatcgggccagcaacaggcacc<br>tgaccatcccagtcagtccactcagggctacaccctctcgggacctgaaattttcctggatatttg	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	2998	710	NA	intron:PXDNL:NM:144651:4/23
0	chr11	9061127	9061128	3000064	0	+	1104685630812	CTCAAGTACCCAGGGACACAA	CCATGCATTTCCCTTATTCCT	OTHER	SVA	SVA_D	aaatggtatattcatacaatggactactattaaacgataaaaatgaatgaaatgctgatataagctaccacatggacaaacctcaaaagcattttgctaa<br>gtgaaagaatccaacacaaaagaccgcatattgtatgattccacttacgtgaaatgtccagaaaaggcaaatatacagatacagaaagtagattactggt<br>tgcttgaggctgggactgggaatgaggattagctgtacaagaacacggggaatcttactgagatgaggaaaatgtttgtattgtgatggttgcacaattc<br>agctgatttactaaaaatcactgacttgcacaattaaaattggtgaatattatagtatgttaattacacctcagtaaagttgtt<font color="green"><u>AAAGTTGCAACTTTTT<br></u></font><font color="red">GCTCCCCCTCCCTCTCCCCTCTCCCATCTCCACTCTTCCTCTCCCCTCTTCCCTCTCCCTCTCCCTCTCTTTCCACGGTCTCCCTCTGATGCCGAGCCGA<br>AGCTGGACTGTACTGCTGCCATCTCGGCTCACTCCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCC<br>ACGCCTGACTGGTTTTCATATTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCAGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTTG<br>GCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTGGTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTGGGCTCGCTACAACCT<br>CCACTTCCCAGCCGCTTGCCTTGGCCTCCCAAAGTACCGAGATTGCAGCCTCTGCCCGGCCACCACCCCATCTGGGAAGTGAGGAGCGTCTCTGCCTGGC<br>CGCCCATCGTCTGGGACGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCAGCGCCATCCCATCTAGGAAGTGAGGA<br>GCGCCTCTTCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCTCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCTGCCGCCCC<br>GGCTGGGATGTGAGGAGCGCCTCTACCCGGCTGCGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAGGAGACCCTCCGCCT<br>GGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCCGGCAGCCGCCCCGTCCGGGA<br>GGTGAGGGGCGTCTCTGCCCCGCCACCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGGGTCAGC<br>CCCCCGCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTCCCGGCCAGCCGCCCCG<br>CCTGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCAACCCGTCCGGGAGGGAGGTGGCGGGGTCAGCCCCCCGCCCAGCCAGCCGACCCGTC<br>CGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCAGCCAGCCGCCTCGTCCGGGAAGGAGGTGGGGCGGTCA<br>GCCCCCCGCCCGGCCAGCCGCCCCATCTGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCCGGCCAGCAGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGC<br>CCCCCGCCCGGCTAGCCAACCCTTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCAGCCAGCTGCCTC<br>ATCCGGGAAGGAGGTGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGT<br>CCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGACCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGA<br>GCCCGTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTACCCAGCAGCTCATTGAGAACGGGCCATGATGACAATGGTGGTTTTGTGGAGTAGAAAGGGGG<br>GAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAGAGAGGTAGACATGGGAGACTTTTCATTTTGCTCTGTACTAAGAAAAAT<br>TCTTATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATG<br>TGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGC<br>AGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGC<br>GAGAAACACCCAAGAATGAACAATAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGTTGCAACTTTTT</u></font>ctgaaatctaaaattatacatttatctgcttatta<br>gtgcaaaataaatatagaaaggtaaaaccagaaactacagagattggtgacccacagggcacggggaaagggtggaaagaatgaatacaattaattgtat<br>acatacaattaatacatgtttaaggaataagggaaatgcatggaaggaggggatggaagtgaataaaagtggaatacgaaaagaaacaaatgaacctaat<br>gtattataaactaatagtataaccatactgaagaggatggggaaggaaaatattgacctaaataacactatgaaaaacaacaccttgcttggatgcttta<br>aggctaaaaacaaaatagctgtatgctatactctagtaaatattgtact	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intron:SCUBE2:NM:020974:2/22
0	chr11	65918691	65918692	3000065	0	-	1104685201673	NA	NA	OTHER	SVA	SVA_E	acagcctcccaaatagctgagaccacaggcgtgcaccaccacacccagctaattgttttacttttcgtagagaggggtctcactatgttgcttagggtgg<br>tttcaaactcctggcctcaagcaagcctcctgcctctacctcccaaactgctggaatcacaggcatgaaccaccatgcccagcctcctcttgactgtttg<br>taatccttcgtctaccccctgcccagccctatctctaagcaaccactcacctgccttttgtcactatagattattttgcattttctagtattttatatga<br>attggattatacaatgcatactattttttttgaggggggaatctgcttctttcagcattagtatttcgtgatccacccatgctgtgtatgtatca<font color="green"><u>NNNNN<br></u></font><font color="red">TCATTACTTTTTTTTTTTTATTTTTTTTTTATTTTTTATTTTTTATTTTTTATTTTTATTGATCATTCTTGGGTGTTTCTCGCAGAGGGGGATTTGGCAG<br>GGTCATAGGACAATAGTGGAGGGAAGGTCAGCAGATAAACAAGTGAACAAAGGTCTCTGGTTTTCCTAGGCAGAGGACCCTGCGGCCTTCCGCAGTGTTT<br>GTGTCCCTGGGTACTTAAGATTAGGGAGTGGTGATGACTCTTAACGAGCATGCTGCCTTCAAGCATCTGTTTAACAAAGCACATCTTGCACCGCCCTTAA<br>TCCATTTAACCCTGAGTGGACACAGCACATGTTTCAGAGAGCACAGGGTTGGGGATAAGGTCACAGATCAACAGGATCCCAAGGCAGAAGAATTTTTCTT<br>AGTACAGAACAAAATGAAAAGTCTCCCATGTCTACTTCTATCCACACAGACCCCGCAACCATCCGATTTCTCAATTTTTTCCCCACCCTTCCCGCCTTTC<br>TATTCCACAAAACCGCCATTGTCATCATGGCCCATCCCCAATGAGCCGCTGGGCACACCTCCCAGACGGGGTCGTGGCCGGGCAGAGGGGCTCCTCACTT<br>CCCAGTAGGGGCGGCCCGGCAGAAGTGCCCCTCACCTCCCAGATGGGGCGGCTGGCCGGGAGGGGGGCTGACCCCCCCACCGCCCTCCCGGACGGGGCGG<br>CTGGCCAGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCTGGATAGGGCGGCTGGCCGGGCGGGGGGCTGTTC<br>CCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCAGAGGGGTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGG<br>GCGGCTGGCCAGGCAGGGGGCTGATCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCCACCTCCCTCCCGGACGGGG<br>CGGCTGGCCGGGCAGAGGGGTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGGGCGGCTGGCCAGGCAGGGGGCTGA<br>TCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCAGGGGGCTGACC<br>CCCCCTCCCCCCTCCCGGACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGATGGGGCGGCTGGCCAGGCGGGGGGCCCACCCC<br>CCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGAGCCCCTCACCTCCCGGACGGGG<br>CGGCTGGCCGGGCGGGGGGCTGACCCCCCCCACCTCCCTCCCGGACGGGGTGGCTGCCGGGCGGAGACGCTCCTCACTTCCCAGACGGGGTGGTTGCCAG<br>ACGGAGGGGCTCCTCACTTCTCAGACGGGGCGGTTGCCAGGCAGGGGGTTTCCTCACTTCTCAGACGGAGCGGCCGGGCAGAGACACTCCTCACCTCCCA<br>GACAGGGTTGCGGCCCAGCAGAGGCGCTCCTCACATCCCAGACAGGGCGGTGGGGCAGAGGTGCTCCCCACATCTCAGACGATGGGCGGCCGGGCAGAGA<br>CGCTCCTCACTTCCTAGATGGGATGGCGGCGGGGAAGAGGCGCTTCTCGCTTCCTAGATGGGATGGCGGCCGGGCAGAGACGCTCCTCACTTTCCACACT<br>GGGCAGCCAGGCAGAGGGGCTCCTCATATCCCAGACGATGGGTGGCCAAGCAGAGACGCTCCTCACTTCCCAGACGGGGTGGCGGCCGGGCAGAGGCTGC<br>AATCTCGGCTCTTTGGGAGGCCAAGGCAGGCGGCTGGGAGGTGGTTGTAGCGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCACCATTGAGCACTG<br>AGTGAACGAGACTCCATCTGCAATCCCGGCACCTCGGGAGGCCGAGGCTGGCGGATCACTCGCGGTTAGGAGCTGGAGACCAGCCCGGCCAACACAGCGA<br>AACCCCATCTCCACCAAAAAAAAACGAAAACCAGTCAGGCGTGGCGGCGCGCGCCTGCAATCGCAGGCACTCGGCAGGCTGAGGCAGGAGAATCAGGCAG<br>GGAGGTTGCAGTGAGCCGAGATGGCAGCAGTACCGTCCAGCTTTGGCTCGGCATGAGAGGGAGAGGGAGACGGGAGAGGGAGAGGGAGACGGGAGAGGGA<br>GAGGGAGACGGGAGAGGGAGAGGGAGACGGGAGAGGGAGAGGGTGATGGGAGAGGGAGAGGGAGACGGGAGAGGGC</font><font color="green"><u>NNNNN</u></font>cttttatttatttatgttt<br>tagacagtttcactctatcacccagggtggagtgcagcggcacaatctcagctcactgcaacctctgcctcctgggctgaagcgattcttatgcctcagc<br>ctcctgagtagctgagattaccggcacccaccaccatgcccagctaatttttgtatttttagtagagatggggttttgccatattgcccaggctggtctc<br>caactcctgggctcaaatgatctgcccgcctgggcctcccaaagtgctagcattacaggcatgagccactgtgcccggcatcattgcttttaaattgtga<br>aaagtattcctgtgatttgtttatcccttaacctatttatggacattgggttgtttccagttttgtgccatcacaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	41121736	41121737	3000066	0	-	1104685158586	TCGTGTTTCTTTGTGAATCATTTT	TGTGCTCTCTGAAACATGTGC	OTHER	SVA	SVA_F	ggttcataacttaacgtaaattacaatgaacaatccaaggaattagattatttcccgtcccagccagctttgtaaaggcacaacacgtgttgcagtgatc<br>acttaaatttgtacctaacttgtgcaagctacccctggtggtggaatgctgcccttctcagagtgaggctgaatgtgggcctaaagtatccagcatattt<br>tcttccaactctgaaattctgtggcttaggtcttgttactagaagtgaattctgtttcaccattaccagatattataaagttagaggtgcatttcagtag<br>aaaaaaataacattctcccctcaccccccagcaataaacctttggaaatgaaaaaacaatcaacttgtgatgaatactaacagtactaaa<font color="green"><u>GATCATTTTT<br></u></font><font color="red">CGCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCGTCTCCCTCTCCCTCTCCCCACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCAT<br>CTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGTCTGCCAATGCCTGCGATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAG<br>ACGGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCACGAGTGATCCGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCT<br>CGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAA<br>GTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTG<br>CCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGTGCCTCTTCCCAGCCGCCATCACATCTAGGA<br>AGTGAGGAGCGTCTCTGCCCGGCAGCCCATCGCCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCCGCC<br>GAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGG<br>AGACCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCC<br>AACCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCG<br>TGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCC<br>CCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGG<br>GGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGG<br>GGTCAGCGCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAG<br>CCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTTGGGGGGTCAGCCCTCCGCCCGGCCAGCC<br>GCCCCGTCTGGGAGGTGAGGGGTGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGG<br>GGGTGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGGGGGTCAGCCCCCCCCCCCCCGGCCAGCCGCCCCATCCGGGAGGTGA<br>GGGGCGCCTCCGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGG<br>CGGGAAAGGCGGGGAAAGGATTGGGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAGGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAA<br>AATTCCTCTGTCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGG<br>GCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACAC<br>TGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCA<br>AATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAA</font><font color="green"><u>GATCATTTTT</u></font>aatactcaaaatactaatggaaaaatctactc<br>taatcaaaatgattcacaaagaaacacgaagtaaaactacctcaccagaaatacagataatattattatctgcctgactataattcatatattattcatc<br>taatacagcaaataaacctatttattcctttgcattttactataggccatattcttgtcattaaataattactagtgttcattttacaattattaaaact<br>aggaggtttgtaaagagtaaaactttaaagtaggaaaagttaaatatttattttagctaactgatatctcataattccttttggtttaaaatattaatat<br>tccttttttgtaatcataatgaaatctgtttaaagaaatctactgccctatgtttttg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intron:KIAA0564:NM:015058:37/45
0	chr13	81265712	81265713	3000067	0	-	1104685166796	GATGGCCTAATGCAAAAAGTTC	CTCTGCCTAGGAAAACCAGAGA	OTHER	SVA	SVA_F	cgtttccaaatgttctgattccagtactcaaaataaaaatttctctatcaactggaagtaagctaatcatttttaagaagtgtataatttattttcatga<br>atcattactatattcaatgaaataaatagaaaaaagatctcttccaacaaaccaaagctactgagtctagaaacttctgtgtaaatacttgaaggaacac<br>acattaaaaatagaataacaactctcttctttcccttctttccctctctcagtattgcgattctccaaaaggtagctcacggctgtcctctctctgaaca<br>ttctccctgggtgtgcatatttttcattgatgtgattaccatggttatgctcataacttcttgatggttaccttttcatgctttag<font color="green"><u>AAAAGTCTTAACTA<br></u></font><font color="red">GGAGCCATCACACTCGGCCACAAATAACAAGCTTTAAAAGCCACCCCTCTCCCTCTCCCTCTCCCGCTCCCTCTCCCTCTCCCTCTCCCTCTCCACGGTC<br>TCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGTCTGCCAAATGCCTGC<br>GATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCGAGTGATCCG<br>CCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCGATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTC<br>ACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTC<br>TCTGCCTGGCCGCCCATCATCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTA<br>GGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGC<br>CCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCAGGCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTG<br>AGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCA<br>GCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGAGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCAT<br>CCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGTCCGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCC<br>GGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAGGTGAGGAGCCCCTCTGCCTGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCAT<br>TGAGAATGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGA<br>AAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTTACCCCCAACCCTGTGCTCTCTGAAACATGTG<br>CTGTATCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTC<br>CCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACC<br>TTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAAAAATTTAAAAAAAAAAAAAA</font><font color="green"><u>AAAAG<br>TCTTAACTA</u></font>aatgaatatttgaaaaagtgtgtgaaaaattgtagagtccatgaataatgtgatctttcctcaaggaatttttactaaatccaccaaacag<br>ataattagattaggggcaatgtacctcaattttccctcctaggcttcccaaagcaggagattacaattatgagccacctcacccagcagactcaatccaa<br>cagcatttgtctgatctctttcctgttttttcctgaactttttgcattaggccatcagagattgaatttagagtatgaaatgttgaccttcttaatagac<br>tctaaattacaatttttgtctcctgagaaccactagcatttggtattttcagttttttaaaaatattttatattgatagaccactgttgtttcaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intergenic
0	chr14	80856536	80856537	3000068	0	-	1104685288518	TTTAATAGAACCCCTCCATCCA	AGTACCCAGGGACACAAACACT	OTHER	SVA	SVA_E	tttagagggtgtggctctgatgatcactgtcacatttcatctgtaggcacatcctaagccaggaagagacatcgcagagacctgtcctgaacacatcctc<br>ataagaggggagtgtcatccagtcttcttaaccccaaaggataatacaaaatagtgctgagagtaaatagattgctttcgctttagtttcagactgagat<br>cttgaggattaagtaagatgtgtgcatgtgcaggcaggagtagaaataatgaatgtaagatgtagctttaacgtgtggactttgtaatttttgagatgag<br>agtgaaaacttcagccctcacttagaaagaaatcacatttggctggaagtgctgtttctcccccatgttatgctatgtaatggattaatta<font color="green"><u>ACCATTTTT<br></u></font><font color="red">TGCCAGGCTGGTCTTGAACTCCCAGGCTCAAACAATGTCCCCACCTTGGCCTCCTACAGTGCTGGGATTACAAGGGCGTGAGCCACCACACCTGGCCTGT<br>ATAAGTCTTTCCTGGGAACATGCATGTGGAAGGTATTCAAAAAACATTTGTTAGGGATAAAAGACTTTATGGTATCTCCCCTCTCCCCTCTCCCCTCTCC<br>CCCTTCCCACGGTCTCCTTCCACGGTCTCCCTCTGATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTC<br>TCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTTTTGGTGGAGACGGGGTTTTGCTGT<br>GTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTTGTTCACTCAGTGCT<br>CAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCGCTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCCCCCAAAGTGCCGAGATTGCAG<br>CCTCTGCCCAGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCCCCCATCGTCTGGGATATGAGGAGCCTCTCTGCCTGGCTGCCCAGTC<br>TGGAAAGTGAGGAGCGTCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGCGGGGGGGGGGTCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGG<br>GGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGACGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCTGGCC<br>AGCCGCCCCGTCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCACCCCTACTGGGAAATGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTG<br>CCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGAGTGGGGAAAAAATTGAGAAATCGGATGGTTGCC<br>GGGTCTGTGTGGATAGAAGTAGACCTGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATC<br>CCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCA<br>GCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGA<br>CCTTTGTTCACTTGTTTATCTACTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAA<br>AAAATAAATAAATAAATTAAAAAA</font><font color="green"><u>ACCATTTTT</u></font>cacaattactctcctctttaaatctatttccttgagataggactttgcagctcctcttatcaagggt<br>tggagtctctttccctagcctgtgaatgtgggcttggcctttttacttactttagccaacagaattcatagaagtgaaggtgtgtgggtatgtcagttcc<br>aagcccaggtcccaagccaaggtcttaagaggctcacttacacaattctgcttgctctcctagaatctggcgtctcttggaatgtagacagaatgggctt<br>gcttgctgtggcccagagaccccatcaccccaggtgacagtgaccttacactggccacgtgagtgaggcaattctagaccagccagctaacctcagacac<br>ttgagtgggcctagcagagatcgg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intron:STON2:NM:033104:3/5
0	chr14	91689174	91689175	3000069	0	-	1104685285614	NA	NA	OTHER	SVA	SVA_F	aaagaaaaactccctttgacattttaaatctcaaaataagaaactgaaaagaaaaacaaaaaagaaacagaaaaatattttcagcactacgaccaataaa<br>aatgattttttcctaagagctcttccaaattagttaagaaaaggatgatcaacacatgaaaaagcacaagatacttaaaaaggcaatttacaaaataaga<br>aagacaaataactactggccatgaaaagatccttaattttactaatttttgaaaagcacaaaatataaaaaacataattgttttcatctatgagattggc<br>aatgccatacatggggaaagagtaccttcttccattatctgttggaaaattagtgcaactatgttaaaaggcaatttgctaacat<font color="green"><u>CAAATTTTATTTTTA<br></u></font><font color="red">GGGTGCAGTGGCGTGATCTCGGCTCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCA<br>CCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGT<br>CTCCGCCCAGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCG<br>TCTGAGATGTGGGGAGCGCCTCTGCCCCACCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCTGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCT<br>GCCCGGCCGCCCCGTCTGAGAAGTGAGGGGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAG<br>AAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCA<br>GCCCCCCGCCCGTCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCC<br>CGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGC<br>CCCCTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGA<br>AGTGAGTAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAG<br>AAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTA<br>AGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCTCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGATTAAATGGAT<br>TAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACA<br>AACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCC<br>TGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTAAAAAAAAAATAAAATAAAATAAAAAAAATAAAAAAAA</font><font color="green"><u>CAAATT<br>TTATTTTTA</u></font>acatttgacacagtatttctacttctaggaatttatcctactgaaacaatcacaaatgtgtaaaaaaaaagtacattcgtacattgcagca<br>atgcttatagtagtaaaaaactggacaaaattttaaaatccatcaaaatggaatgattaaatcagtagttctcatatatttatctcaggactaccttaga<br>ctcctaaaaattagagaaccccaaagagctttttgtttttgtgggttatatttatcaatgtctaccttatcagaaattaaaactgagcaatttttaaaat<br>atttatctgttcatttaaaaaataataaaaccagcagggcatggtggcttatacctgtaatcctagtactttgggaggtcgaggcaggcagatc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CPSF2:NM:017437:9/16	
0	chr17	4899933	4899934	3000070	0	-	1104685548264	ACGGTTCCTTCTCCTCACCTA	AATCAGGGACACAAACACTGC	OTHER	SVA	SVA_F	aggcagaggttttggtgagccaagatcacaccattgcactccagcctggtcaacaagagcaaaactccaaaaaaagaaagaaagaggccaagtgcggtgg<br>ctcacacctataatcccagcactttgggaggccgaggcaggcggatcacgaggtcaggagatcaagaccatcccggctaacacggtgaaaccccgtctat<br>actaaaaatgcaaaaaaattagccgggcgtggtggtgcattcctgtaaccccagctactcaggaggctgaggcaggagaatcacttgaacccggaagcag<br>aggttgcagtgagccgggatcgtgccattgcattccagcctgggtgacaaaagcgaaactctgtctcaaaaattaaa<font color="green"><u>AAAAAAAAAAAAAAAAAAAAAAG<br></u></font><font color="red">CCCTCTCCCTCTGTCTCCCTCTCCCCACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCATTGCAACCTCCCTGCCT<br>GATTCTCCTGCCTCAGCCTGCCCAGTGCCTGCCATTGCAGGCACGCGCCGCCATGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGG<br>CAGGTCTCCAGCCCCTAACCGCGAGTGATCCCGCCAACCTCAGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGC<br>CCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCC<br>GGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTG<br>AGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCC<br>GCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGTGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGA<br>GCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCC<br>CGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCATCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGG<br>GGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCCCCCCCCGCCCACCGCCCCGTCCGGGAGGTGAGGGGCG<br>CTTTTGCCTGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGG<br>ATGACAATGGCGGCTTTGTGGAATAGAAAGGCAGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGG<br>GAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTG<br>CTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGGGTGCTCGTTAAGAGTCATCACCAATC<br>CCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACC<br>TTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTA</font><font color="green"><u>AAAAAAAAAAAAAAAAAA<br>AAAAG</u></font>aaaagaaaagaaatgaaaaagaaagtgaaggggagaaaagcatctgtaaaagcccaagggtggtaggatgagagctcgtttccctgtgcacctgg<br>ggatgcacactcccctggaggaccagggaggcgccctcgtcctcttagggccactctaggtgaggagaaggaaccgtctattgtcctagaaaggccgatc<br>ctctctaggcttccaaatcgatggtgagctggaagagtggtgatgcggctcatcttcagagcgctttcttgtgctgtcgttgtcctccagagaagaggtt<br>gggggctgtgcaagatgggacaatgaccacccagggtaggcccatgtcatagtatggcagtgccgaggccttaaaaatctat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intergenic
0	chr17	78353281	78353282	3000071	0	+	1104685138531	CAGTGATGAGTCTGAATGACAGG	AAAATTGAGAAATCGGATGGTT	OTHER	SVA	SVA_E	cagcgtggcaggagggtggcgtgtgcgtgatcgtgtggctcagggtcagcgtggcaggagggcggcgtgtgcatcgtcgtgtggctcggagtcagcgtgg<br>caggagggcggcgtgtgcgtcgtgtggttcggagtcagcgtggcaggagggcgtcgtgtgcgtcgtgtggttcggagtcagcgtggcaggagggcggcgt<br>gtgtgtcgttgtgtggctcggagtcagcgtggcagcagggtggcgtgtgtgtcgtgtggctcggggtcagctcagcctccctggcgtggcagcgtgtgtg<br>cgtcgtgttgctcagaggcggtgtggcctccctggtgtggatgcgctgtgggggaaagctgcatcggatcagtgatgagtctgaatgacaggctc<font color="green"><u>NNNNN<br></u></font><font color="red">CTTTTTTTTTTTTTTTTTCCCAAGGCAGAAGAATTTTTCTTAGTACAGAACAAAATGAAAAGTCTCCCATGTATACTTCTATCCACACAGACCCGGCAAC<br>CATCCGATTTCTCAATTTTTTCCCCACCCTTCCCGCCTTTCTATTCCACAAAACCGCCATTGTCATCATGGCCCATCCCCAATGAGCCGCTGGGCACACC<br>TCCCAGACGGGGTCGTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCGGGGCAGAAGCGCCCCTCACCTCCCGGATGGGGCGGCTGGCCGG<br>GCGGGGGGCTGATCCCCCCACCACCCTCCCGGACGGGGCGGCTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCTGGGCAGAGGCGCCGCT<br>CACCTCCTGGATAGGGCGGCTGGCTGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGGTTGGCCGGGCAGAGGGGTCCTCACTTCCCAGT<br>AGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGGGCGGCCGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGACAGGGCGGCTGGCC<br>GACCCCCCCCCCGCCTCCCTCCCGGACGGGGCGGCTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCC<br>CGGACGGGGCGGCTGGCCAGGCGGGGGGCTGATCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCACCTCCCTCCCGG<br>ACTGGGCGGCTGGCTGGGCGGGGGCTGACCCCCCCACCTCCCTCCCAGACGGGGCGGCTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCC<br>GGGCAGAGGCGCCCCTCACCTCCTGGATAGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCAGAGGG<br>GTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGGGCGGCCGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCG<br>GACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCACCTCCCTCCCGGACTGGGCGGCTGGCCGGGCGGGGGCTGAGACAGGCTCCCTTTC</font><font color="green"><u>NNNNN</u></font>ctg<br>ttggagaaagtgaaaccgcctttcttgctggcagaaatgatgtcttagcagtctgtagcggccggtgtgaacgggttggttctcaaggagacagactttt<br>ctagtgttcttagggtgctgtgtgttagcgaccttcagtttgtttcaagtgctataatacgtgtggtttgggaaggaattacttggttaaggtcagctca<br>cactccgtcctggatgatggcacattccagagacgcgtgttgtgttgcagtgttgggtgtgcagctcactctgtaggaagttgctcattaggcacagtgt<br>tcgtggctagtttctcaaagctgctgtggggaatgttcagtgctgtaccaggcagggttctccagagaagcagagcccataggatgtgtgtg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intron:TBCD:NM:005993:9/39
0	chr19	23803144	23803145	3000072	0	+	1104685516018	TTAAGCAGCATGGAAAAATGG	GAGTGAACGAGACTCCGTCTG	OTHER	SVA	SVA_E	aaacatcagtttctaaaaaaaaaaaaaagaaaaaaaaatgctgcaataattatgagtctataaatgactacttatatgaccatatatgtgaaagtttata<br>tatgtgctgcattctattttattagtctactttttcacctttatactcatatcaaattgtttaatttggtagctttgtaatgtgttttgaatcaggcact<br>ttaatgcctgcagcattctttctttctttttttttttttaatattgttgggtagtttgtttttcttttgagtctctgtatacttttgaggttggtgtttc<br>tatttcttcaaaaatgcaatgagaaatttgaaaaatattgcattaaatctgtagattgcattgagcaggatggactctgcaatat<font color="green"><u>AAGTATTTCAACCTT<br></u></font><font color="red">TAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCGTTACAACCTCCACCT<br>CCCAGCCGCCTGCCTTGGCCCCCCAAAGTGCCGAGATTGCAGCCTCTGCCCAGCTGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCCCCCA<br>TCGTCTGGGATATGAGGAGCCTCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCC<br>TCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTATCTG<br>GGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCAGCCGCCCCGTCTGAGAAGTGAGGAAACCCTCTGCCT<br>GGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGA<br>GGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCC<br>CTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGTCGGCCAGCTGCCCTGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCTGG<br>CCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGT<br>GGGGGGGGGTCAGCCCCCCGCCCGGCCAGCTGCCCCATCCAGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCC<br>CGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGAGTGGGG<br>AAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTT<br>GGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGT<br>GCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCA<br>GGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTACTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCG<br>AGAAACACCCAAGAATGATCAATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTATTTCAACCTT</u></font>tgtgtaagagcacactcaagagtgtgttgtttagtttctatat<br>atttgtaaatttttcagtttttttttttgcttttatcgttgtatactctcattccattttggtcatagaatgtagttcatagaaatttacttttaaaaaa<br>tttgataagacttcctttttgtcctaagatgtggtctttcaagggaaatgttgtatgagctattgagaagggtgtgtattctgatgttgttgaggagtgt<br>tctccataactctgtttggaataattgttttatactgcctttaagtagtctgttctcttattaacattctttcttgttttatttttattacaaaaagtgt<br>ggtattaaaatatattgttctaattatattgctttctgtgtg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	downstream:RPSAP58:NR:003662
0	chr3	149090543	149090544	3000073	0	+	1104685605386	ATGCTTGAAGGCAGTATGCTC	CCCAGGGGACAAACTTCTAAA	OTHER	SVA	SVA_F	ttaatgaacaagttacgactgtgggtccctggagaaaagacagaacagaacttgtctcagagttgtcccatcagaagtgggagaaagctgtgctattcat<br>ctaccaactcctaaacctccttgctgacaactgttcccaggggctattaccccttccccagtgctgcctgacccatacccagctgcgcatgctcctgcca<br>ccagagaaagcccaagggagagaattgcaggtatttgcagtaagaagccatcaatatattcaggaaaggcaagtgtccaggcaatctgggtggattgtgg<br>ctgctgcccacactttcttagattccattctacggtgagaggagaccattatctgttctacattgtttcaacagatttagttt<font color="green"><u>TGTTCATTTTCATTGTT<br></u></font><font color="red">GGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGC<br>TCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTG<br>TCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATC<br>TAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCT<br>GCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGAGTCTCTGCCCGGCCGCCCCGTCTGAGAAG<br>TGAGGAGCCCCTCCGCCCCGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCAGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGG<br>CAGCCACCCCGTCCGGGAGGGAGGTTGGGGGGGGGGTCAGCCCCCCCTGCCCGGCCAGCCACCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCC<br>CCTACTGAGGAAGTGAGGAGCCCCTCTGCCCAGCCAGCTGCCCCGTCCGGGAGGGAGGTGGGGGGTTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGG<br>AGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCACCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCC<br>CCTCTGCCCGGCCACCGCCCCTTCTGGGAGGTGTGCCCAGTAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAA<br>AGGTGGGGAAAAGATTGAGAGATCGGATGGTTGCCGTGTCTGTGTGGAAGGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCC<br>TCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTG<br>CAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGTATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAACCAGGGACACAAACACTGCGGA<br>AGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCC<br>CCTCTGCGAGAAACACCCAAGAATTATCAATAAAAAAATAAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TGTTCATTTTCATTGTT</u></font>caaatacgccgcagtcaga<br>gaacatctgacccttctctgtagagaaaaataaatgcccagtaggcagacagagaataatgggcctggcttgacctagaatggtaaaaatttagaagttt<br>gtcccctgggaaaagaggtcttacagtgctcagagtagctaggatgaactgagaaagctttttacctctttaaagaacagtgtaagatggactgtagcct<br>ttgaaaagtacctgtgaggccagagttagcaagatttttaaagagccaagttatgaggtaaatgattagctaactagagtttgtcacaattaggaagtga<br>gaatgaaattcaatttgtgtttagaagtttattttgcattaagctcttctatctagggttttaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intergenic
0	chr5	55483770	55483771	3000074	0	+	1104685095005	TGGTGACCCTACTCCATTTTT	AGCAGAAGAAACAGTCCCTGA	OTHER	SVA	SVA_F	ctgggtgacacagtgagaccacatctcggaaaaaaaaaaatctatatatatatatatgtgtgtgtgtatatatatgtatatatacgtgtgtatatataca<br>tatacatacacacgtatatgtgtgtatatacacatatatgtatatatgtatatatgtgtgtgtatatatatataaaaaatttttgtgcctcactaaagct<br>tttgtgcaagctactgaactagaaactggggatacaaagataaaaaaaggcatggtctgcctctagaagtttatagggttggaggagagtgggagaggaa<br>ggtgggggctcctaagtagtggtgaccctactccattttttttttttttagatgttcggtcttaggctaaaacttctgattcat<font color="green"><u>AAAAACTTTTGTTTGT<br></u></font><font color="red">TGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCA<br>AATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAAAACAACAAAAACAAAAACAAAAACAAAAAAATAAATGA<br>ATAAAATAAAACAAGTACAAATTTAAACTAGAAAAAAAAA</font><font color="green"><u>AAAAACTTTTGTTTGT</u></font>tatgttaccttttgctaactgtaaagttaaaaatttcaagtcag<br>ggactgtttcttctgcttttggttctatctcaggaatgtggtaagtagaagtgatgctaagaattatgtccaaaaggtcacatctgtttttgcaacttaa<br>atttattttctcagagtggttctacaattgaagttttgtttgtcagactgctcacaaaaatctgcttacataagaatgtgcatttaatatatcctaaaca<br>atatatatatcctaaatgctgtgcataacagtgcttctctggttaaatgcattcaaagttctaacccagatgccaacagctcagagcctctcttgataga<br>acactcttcctgtcaaggctaaaatgagagcaggagaggt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	396	141	NA	intron:ANKRD55:NM:024669:6/12
0	chr5	141359854	141359855	3000075	0	-	1104685237087	NA	NA	OTHER	SVA	SVA_Fsp	gaaaaagggtaggaatgaacagatgagcaataaattgtcatgttggggctgtacctgagatccaaacgaggatacagctgttataaagattaaggcagat<br>ttgtgatgagggatattattgcaaggtatgcaaaaatacatttaggtttttttttttttttaaagttaatataatggaatatcttaggtcaatatagcca<br>attaaggaggtagatacagaagttaaaagaagggtttaatttttttaactattttgaggctgggtgcagtggctcatgcctataatcccagtgctttggg<br>aggccaaagcaggaggatcacctgagatcagcagttcaaaaccagcctgggcaacataacaagaccctgtctctacgaaatttt<font color="green"><u>TGCTTGGCTAATTTTT<br></u></font><font color="red">AGACACCTATAATCCCAGCGCTTTGGGAGGCTGAGGCGGGCGGATCATGAGGTCAAGAGATTGAGATGATCCTGGCCAACATGGTGAAACCCCTTCTCTA<br>CTAAAAACAAACAAACAAAAATAGCTGGGCGTGGTGGTGCACACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCTGAGGCAGGAAAATCGCTTCAACCT<br>GGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCACCACTGCACTCCACCCAGACAACAGAGCAAGACTCCGTCTCAAAAAATAAAATAAAATAAAAGGAAA<br>AGAAAAAAGAAATTTCAGGCAGAGGAGGTCGCGGCGCCGGAGGCCCCAGAAGGGTCGAAGGCGCCGCGGGCTGGGGTCGGTGGCTTAGGGAGCCCGTCTG<br>GCCATGGTGGCCGCGGCTGGTGGTTGGCGCGGCTGCGCTGCGGCCCGGGGCAGTGCGGAGCCAGGACAGTCGCGGCGCTGACGCCCGCGGCCCCCAGCTG<br>CAGATATGAAGCGGAGCTGCTACCGCGACCGACGGCAGCCGCCGCCGCCCGACCGCCGGGAGGATGGAGTTCAGCGGGCAGCGGAGCTGTCTCAGTCTTT<br>GCCGCCGCGCCGGCGAGCGCCGCCCGGGAGGCAGCGGCTGGAGGAGCGTACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCC<br>CAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTGCCACCCCGTTTGGGAAGTGAGGAGTGTCTCTGCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCT<br>CTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTA<br>GGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCG<br>GCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTG<br>AGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCA<br>GCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGCCCGGCCA<br>GCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGG<br>GAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGTAGGGAGGT<br>AGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGG<br>CGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGC<br>CAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGTCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACT<br>GGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGG<br>TTGGGGGGTCAGCCCCCGCCCCCGCCCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCAGCCAGCCGCCCCGTCCGGGAG<br>GTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAGGTGAGGAGCCCCTCTGCCCGGCCACCACCCTGTCTGGGAGGTGTGCCCAACAGCTCATTGAGA<br>ACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAA<br>GTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCT<br>GAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTC<br>ATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTA<br>TCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTAAAAAAAA<br>AAAAAAAAAAAAAAAAGAATGGACTTTCCCAGGCCAGCTGTGGTGGCTCACGACTGTAATCCCAGCACTGTGGCAGGCCAAGGCGGGCAGATCACCTGAG<br>ATCAGGAGTTCAAGACCAGCCTGACCAACACGGAGAAACCCCGTCTCTACTAAAAATAAAAAAAATTAGCTGGGCGTGGTGGTGCATGCCTGTAATCCCA<br>GCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGTTGTGAGCTGAGATTGCACCATTGCACTCCAGCCTGGGCAACAAGA<br>GGGAAACTCCATCAAAAAAAAAAAAAAAAAAGGACTTTCTCAAAGAAAATGTATTTAAATGTCTGCACCAATAATTCCAGCATGTGTATGAATAAATATG<br>ATATGTCCTTTACAGTGAAGGTCTAATAAGATTTACTTATATGCCTTTTCCTTCTTAGAAAGTCTCTAAGAAATAAAATATCTTTACAATCAAAAAAAAA<br>AAAAAA</font><font color="green"><u>TGCTTGGCTAATTTTT</u></font>tggtggtgcatgcctgtagtcccagccgctcagaaggctgagacaagaggattgcttgagcccaggagttcaagactg<br>ctgtgaactataatcgcatcactgtaccccaactctggacaacagaacaagaccccatctcaaaaaaatatttttttttgatataaatccaatgattttt<br>atgtttatggaatactgcacttccttaccacaatccttttttttttttttttttaaagagagaaagtctcaccctgtcttccaggctggagtgcagtggt<br>gcgatctcagctcactgcaacctctgcttcctgggttcaagtgattctcctgcctcagactgcccagtagctgggattacaggtgtgcaccaccacaccc<br>acctaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	153471550	153471551	3000076	0	+	1104685223392	CAAGAGGGTGGAATCTCCTTC	CAGAGGCGTAGTGGCTGTATC	OTHER	SVA	SVA_Fsp	atctcaaaattcttctgcttcagttaattatgctctaaattctcagaaatgtacctcagaatactaggaaacaagtttggcaggcaaatggcagaaatgg<br>cacagggatgaagatgaaacaggcattcattcctgggaaattcctggagggaagtcagatttccagcctgagaaaaaataagctcacttctcccccttgt<br>gcccagaacttcagatgctatgagccatatatttccttgaatgagagaaggcaagagggtggaatctccttcttttgacctctcattccaacatttctat<br>actgcaattaatacatttgtagtagtacaatatattggtttgaaacagactgatgtcagtttttaaaacaattaaggtgt<font color="green"><u>GGAATGTAGGGGAATTTTCT<br></u></font><font color="red">GAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGT<br>GCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTT<br>AAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCGGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCAC<br>TTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTA<br>AAAAAAAAAAAAAAAAAAAAAAAAGAATGGACTTTCCCAGGCCAGCTGTGGTGGCTCACGACTGTAATCCCAGCACTGTGGCAGGCCAAGGTGGGCAGAT<br>CACCTGAGATCAGGAGTTCAAGACCAGCCTGACCAACACGGAGAAACCCCGTCTCTACTAAAAATAAAAAAAATTAGCTGGGCGTGGTGGTGCATGCCTG<br>TAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGTTGTGAGCTGAGATTGCACCATTGCACTCCAGCCTGGG<br>CAACAAGAGGGAAACTCCATCAAAAAAAAAAAAAAAAAAAGGACTTTCTCAAAGAAAATGTATTTAAATGTCTGCACCAATAATTCCAGCATGTGTATGA<br>ATAAATATGATATGTCCTTTACAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GGAATGTAGGGGAATTTTCT</u></font>atctgatacagccactacgcctctggtaccccttca<br>cttagccttatgtatttgtacctaattaatgtatgaatgcaagagtgtgcatgtgtgtgtttgcgtgtagacagacagatcaatctttatagccttgctc<br>tacaaaggagtccaaatggagctctatgaaccaattaaaaaaacctcaaagaccaagtatagccatctcatgggggcaggcatttttgtctgttttgttc<br>cctagtcaatctgcatctctcagaacagtgctagcacatagtgggtgctcagtaagtaatttgtttaatcaaaatcacttactcctctttcccagactat<br>ttctataaaagccaaatgcaatcaaacattagaaacaagcaaat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1037	175	NA	intron:RGS17:NM:012419:1/5
0	chr9	133279632	133279633	3000077	0	-	1104685068643	CTCACATCCCAGACGATGG	GGGCAACAGTCCTGGTAAAA	OTHER	SVA	SVA_F	tcacttgaggtcaatagttcaagaccagcctggccaatatggtgaaaccccatctctactaaaaatacaaaaatcagttgggcgtggtggcaggcacctg<br>tagtcccagctacttgggaggctgaggcagaagatcacttgaacccgggaggtagaggttgcagtgagccaagatcaggccactacactccagtctgggc<br>gacacagcagagactccatctccaaaaaaaaaaaaagcccaagatggtagccgcaccatgggccagaggggcaacagtcctggtaaaagcaggatagagg<br>cttctggaggaacaaacaggatggattatctaccatttccaggaaattacaaattagtattgattgcattttcttggagcaatgt<font color="green"><u>AAAAAGCAAAAGATA<br></u></font><font color="red">GAGCGCCGCCCGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCGGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGAT<br>TGCAGCCTCTGCCCGGCTGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCC<br>CAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGC<br>GTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGT<br>CTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCG<br>CCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCG<br>GGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGTAGGGAGGTAGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGG<br>GAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCC<br>CTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCG<br>GCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGT<br>CTGGGAGGGAGGTTGGGGGGGGTCAGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGA<br>GGAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTTGGGGGGT<br>CAGCCCCCCGCCCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTC<br>TGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGA<br>CAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGA<br>CTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGT<br>GTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTA<br>ATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCC<br>CTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTAAAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAAGCAAAAGATA</u></font>aaactttaatgcagtttaatgtatcaaatttttctactttggttactgctttctgtgtccgatttttccaaaatcatgaag<br>atatcctatgttttattctagaggctttattgttttatctttcatgtttacatctatgatctacctaacactgatttctcgatatgatttgtgataaaag<br>tttcatttttttcccttatggagagttcagttctcccagtaccttttctgaaaaggccatcttttctctttgtcatgtgtcataaattaagtgactactg<br>atgtgcagtttgtttgaagactgttccctccaatcagcctatttgtctatctttttggcaacactgcattgtcttaatcactgcagcttttataaagtct<br>ggat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intergenic
