GenePattern Team Blog

End of support for GISTICPreprocess

Posted on Thursday, July 06, 2017 at 03:47PM by GenePattern Team

Due to the end of support for GISTICPreprocess by the authors, we have had to end support for the GISTICPreprocess module in GenePattern. This means GISTICPreprocess is no longer installed on any of our servers and is no longer available from any of our repositories.

Please contact us if you have any questions.

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End of support for GENE-E

Posted on Wednesday, June 28, 2017 at 05:56PM by GenePattern Team

Due to the end of support for GENE-E by the author, we have had to end support for the GENE-E module in GenePattern. This means GENE-E will no longer be installed on any of our servers and will no longer be available from any of our repositories.

For visualizing heatmaps and clusters we recommend HeatMapViewer, and HierachicalClustering, respectively. 

For functions formerly performed by GENE-E, we suggest you try Morpheus. Please see their website for more information.

Please contact us if you have any questions.

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GenePattern 3.9.10 is released!

Posted on Tuesday, May 30, 2017 at 01:05PM by GenePattern Team

GenePattern 3.9.10 is available for use on our Public GenePattern Server, via download, and as an Amazon Machine Image (AMI). The Release Notes give details on new features and improvements in this release. These details include:

  • New Tool: Visualizer Launcher -  a tool for launching Java applets on your desktop. 
  • Improvement: JavaScript Visualizers are now able to use GenomeSpace files as input
  • Update: GSEA modules have been updated to give access to MSigDB v6.0

Feel free to contact us with any questions or comments.

Sincerely, 

The GenePattern Team

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