Download GenePattern

No download is required to use GenePattern on the Amazon cloud GenePattern server

GenePattern 3.9.11 build 228 (latest), Released: 2019-07-05

Please note that GenePattern releases are now hosted on GitHub along with our source code.

Linux (no VM) MacOSX (no VM)

Version (Build) Released Installers
3.9.9 (prod) 2017-02-06 Linux (no VM) MacOSX (no VM)
3.9.8 (prod) 2016-06-08 Linux (no VM) MacOSX (no VM)
3.9.7 (prod) 2016-04-05 Linux (no VM) MacOSX (no VM)
3.9.6 (prod) 2016-01-22 Linux (no VM) MacOSX (no VM)
3.9.5 (prod) 2015-09-25 Linux (no VM) MacOSX (no VM)
3.9.4 (prod) 2015-08-07 Linux (no VM) MacOSX (no VM)
3.9.3 (prod) 2015-06-23 Linux (no VM) MacOSX (no VM)
3.9.2 (prod) 2015-03-19 Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Windows (VM) Windows (no VM) Windows_Pure_64_Bit (no VM)
3.9.1 (prod) 2015-01-16 Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Windows (VM) Windows (no VM) Windows_Pure_64_Bit (no VM)
3.9.0 (prod) 2014-10-01 Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Windows (VM) Windows (no VM) Windows_Pure_64_Bit (no VM)
3.8.2 (prod) 2014-09-02 Linux (VM) Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Windows (no VM) Windows (VM) warfile (no VM)
3.8.1 (prod) 2014-04-07 Linux (VM) Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Windows (no VM) Windows (VM) warfile (no VM)
3.8.0 (prod) 2014-01-06 Linux (VM) Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Windows (no VM) Windows (VM) warfile (no VM)
3.7.3 (prod) 2013-11-01 Linux (VM) Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Windows (no VM) Windows (VM) warfile (no VM)
3.7.0 (prod) 2013-09-02 Linux (VM) Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Windows (no VM) Windows (VM) warfile (no VM)
3.6.1 (prod) 2013-07-01 Linux (VM) Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Windows (no VM) Windows (VM) warfile (no VM)
3.6.0 (prod) 2013-06-03 Linux (VM) Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Windows (no VM) Windows (VM) warfile (no VM)
3.5.2 (prod) 2013-04-08 Linux (VM) Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Windows (no VM) Windows (VM) warfile (no VM)
3.5.0 (prod) 2012-12-03 Linux (VM) Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Windows (no VM) Windows (VM) warfile (no VM)
3.4.1 (prod) 2012-12-01 Linux (VM) Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Windows (no VM) Windows (VM) warfile (no VM)
3.4.0 (prod) 2012-09-03 Linux (VM) Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Windows (no VM) Windows (VM) warfile (no VM)
3.3.3 (prod) 2011-10-03 Linux (VM) Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Windows (no VM) Windows (VM) warfile (no VM)
3.3.2 (prod) 2011-06-01 Linux (VM) Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Solaris (no VM) Windows (VM) warfile (no VM)
3.3.1 (prod) 2011-03-01 Linux (VM) Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Solaris (no VM) Windows (VM) warfile (no VM)
3.2.4 (prod) 2011-01-01 Linux (VM) Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Solaris (no VM) Windows (VM) warfile (no VM)
3.2.3 (prod) 2010-06-01 MacOSX (no VM) Windows (VM) warfile (no VM)
3.2.2 (prod) 2009-12-01 Linux (VM) Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Solaris (no VM) Windows (VM) warfile (no VM)
3.1.1 (prod) 2008-07-01 Linux (VM) Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Solaris (no VM) Windows (VM) warfile (no VM)
3.1.0 (prod) 2008-02-01 Linux (VM) Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Solaris (no VM) Windows (VM) warfile (no VM)
3.0.0 (prod) 2007-04-01 Linux (VM) Linux (no VM) MacOSX (no VM) Other Java Platforms (no VM) Solaris (no VM) Windows (VM) warfile (no VM) warfile (no VM)
2.0.0 (prod) 2005-12-01 Linux (no VM) Linux (VM) MacOSX (no VM) Windows (VM) warfile (no VM)
1.4.0 (prod) 2005-06-01 Linux (no VM) Linux (VM) MacOSX (no VM) Windows (VM) Windows (no VM) warfile (no VM)
1.3.1 (prod) 2005-01-01 Linux (no VM) Linux (VM) MacOSX (no VM) Windows (VM) Windows (no VM) warfile (no VM)
1.3.0 (prod) 2004-12-01 Linux (no VM) Linux (VM) MacOSX (no VM) Windows (VM) Windows (no VM) warfile (no VM)
1.2.1 (prod) 2004-11-01 Linux (no VM) Linux (VM) MacOSX (no VM) Windows (VM)
1.2.0 (prod) 2004-07-01 Linux (no VM) Linux (VM) Linux_gpClient (VM) MacOSX (no VM) MacOSX (no VM) Windows (VM) Windows (VM)
1.1.0 (prod) 2004-04-01 Linux (VM) Linux (VM) MacOSX (no VM) MacOSX (no VM) Windows (VM)
1.0.0 (prod) 2004-03-01 Linux (VM) MacOSX (no VM) MacOSX (no VM) MacOSX (no VM) MacOSX (no VM) MacOSX (no VM) Windows (VM)

Installation Instructions

  1. Upgrading: If you are upgrading an existing GenePattern installation, see the FAQ for the recommended upgrade procedure.
  2. The FAQ contains critical information on preserving GenePattern settings and data. View the FAQ.
  3. Read the GenePattern License Agreement.
  4. Please note that the Windows installer is now deprecated.
  5. View the Release Notes.

Prerequisites for Installing GenePattern

  • Java 1.8 or Java 1.9. Untested with Java 1.11
  • Docker

Mac OS X Install

Download the 'GenePattern.app.zip' file. Unzip and launch the application. You will be prompted to enter some basic configuration details. Restart and you are up and running. The user data and customization files will be added to the '~/.genepattern' hidden folder in your home directory.

Linux Install

Download the 'GenePattern.bin' file. Then run the installer in headless mode.
Instructions can be found in '/gp_home/resources/installer_example.properties'

Register

The first time the GenePattern server is launched, the GenePattern Registration page will appear in your browser.

Fill out the registration form, read the license agreement, and click the I Agree button at the bottom of the form.

Install Modules

Click the Install modules link. You will see a list of the modules that are available.

Click the check box next to Name (Version) to unselect all. Then, select which modules you want to install and click Install Checked

Source Code

Source code for GenePattern is available under the GenePattern software license. Each module has a separate license provided by its author.