Analytic Technique for Assessment of RNAi by Similarity
Author: Aviad Tsherniak, Broad Institute, aviad@broadinstitute.org
Contact:
Aviad Tsherniak (Broad Institute), aviad@broadinstitute.org
Algorithm Version:
1. D.D. Shao, A. Tsherniak et al., “ATARiS: Computational quantification of gene suppression phenotypes from multi-sample RNAi screens”, Genome Research, 2012
Name | Description |
---|---|
gct file * | input GCT file. Unique reagent identifier in first column, gene symbol in second. |
identifier * | text string to identify the current run |
random seed * | seed for random number generator |
null significance * | gene solution significance level (1 - null percentile) Default: 0.15 |
min A value * | minimum effect magnitude for RNAi reagent (relative to reagent with maximal effect) Default: 0.3 |
* - required
ATARiS can only be used on the GenePattern public server. Please contact the authors listed above if you have an interest in installing ATARiS locally.
Task Type:
RNAi
CPU Type:
any
Operating System:
any
Language:
R
Version | Release Date | Description |
---|---|---|
3 | 2016-06-07 | Bug-fix: added missing package installer declaration file. |
2 | 2015-12-02 | Updated to use R-2.15 and the new package installer mechanism. |