GSEA v2.0.1 Release Notes

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Release 2.0.1 corrects two known problems in the GSEA software:

  • Leading edge analysis no longer fails if your GSEA report is based on a preranked list or continuous phenotype. This problem occurred and was fixed in the user interface; no change was made to the algorithm.
  • GSEA Run page includes a scroll bar to keep the Run button visible regardless of your screen resolution or window size.


Release 2.0.1 also corrects an error in the GSEA User Guide:

  • Changed the number of permutations recommended for gene_set permutation from 10000 to 1000.
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