https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=1006&feed=atom&action=history
1006 - Revision history
2024-03-29T11:17:26Z
Revision history for this page on the wiki
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https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=1006&diff=2542&oldid=prev
Hkuehn at 17:01, 12 January 2007
2007-01-12T17:01:20Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 17:01, 12 January 2007</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td>
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<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>The metric that you selected in the <span style="font-style: italic;">Metric for ranking genes </span>parameter (Signal2Noise or tTest) requires that you have at least three samples for each phenotype. You have too few samples for at least one of the phenotypes selected in the <span style="font-style: italic;">Phenotype labels</span> parameter .<br /><br />To analyze a categorical phenotype that has fewer than three samples, use one of the following ranking metrics:<br /></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>The metric that you selected in the <span style="font-style: italic;">Metric for ranking genes </span>parameter (Signal2Noise or tTest) requires that you have at least three samples for each phenotype. You have too few samples for at least one of the phenotypes selected in the <span style="font-style: italic;">Phenotype labels</span> parameter .<br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>To analyze a categorical phenotype that has fewer than three samples, use one of the following ranking metrics:<br /></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><ul></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><ul></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Ratio_of_classes</li></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Ratio_of_classes</li></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Diff_of_classes</li></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Diff_of_classes</li></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div></ul></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div></ul></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><br />For information about the metrics, see the <span style="font-style: italic;">Metric for ranking genes </span>parameter on the [http://<del class="diffchange diffchange-inline">wwwdev</del>.broad.mit.edu/gsea/doc/<del class="diffchange diffchange-inline">GSEAUserGuide</del>.<del class="diffchange diffchange-inline">htm#</del>Run_GSEA_Page Run GSEA Page] in the <em style="">GSEA User Guide</em>.<br />For information about phenotypes, see [http://<del class="diffchange diffchange-inline">wwwdev</del>.broad.mit.edu/gsea/doc/<del class="diffchange diffchange-inline">GSEAUserGuide</del>.<del class="diffchange diffchange-inline">htm#</del>Phenotypes Phenotype Labels] in the <em style="">GSEA User Guide. </em></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>For information about the metrics, see the <span style="font-style: italic;">Metric for ranking genes </span>parameter on the [http://<ins class="diffchange diffchange-inline">www</ins>.broad.mit.edu/gsea/doc/<ins class="diffchange diffchange-inline">GSEAUserGuideFrame</ins>.<ins class="diffchange diffchange-inline">html?</ins>Run_GSEA_Page Run GSEA Page] in the <em style="">GSEA User Guide</em>.<br /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>For information about phenotypes, see [http://<ins class="diffchange diffchange-inline">www</ins>.broad.mit.edu/gsea/doc/<ins class="diffchange diffchange-inline">GSEAUserGuideFrame</ins>.<ins class="diffchange diffchange-inline">html?</ins>Phenotypes Phenotype Labels] in the <em style="">GSEA User Guide. </em></div></td></tr>
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Hkuehn
https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=1006&diff=2127&oldid=prev
Hkuehn at 15:46, 15 December 2006
2006-12-15T15:46:34Z
<p></p>
<table class="diff diff-contentalign-left" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 15:46, 15 December 2006</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td>
<td colspan="2" class="diff-lineno">Line 1:</td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>The metric that you selected in the <span style="font-style: italic;">Metric for ranking genes </span>parameter (Signal2Noise or tTest) requires that you have at least <del class="diffchange diffchange-inline">two </del>samples for each phenotype<del class="diffchange diffchange-inline">; however, you </del>have <del class="diffchange diffchange-inline">only one sample </del>for one of the phenotypes selected in the <span style="font-style: italic;">Phenotype labels</span> parameter .<br /><br />To analyze a categorical phenotype that has <del class="diffchange diffchange-inline">only one sample</del>, use one of the following ranking metrics:<br /></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>The metric that you selected in the <span style="font-style: italic;">Metric for ranking genes </span>parameter (Signal2Noise or tTest) requires that you have at least <ins class="diffchange diffchange-inline">three </ins>samples for each phenotype<ins class="diffchange diffchange-inline">. You </ins>have <ins class="diffchange diffchange-inline">too few samples </ins>for <ins class="diffchange diffchange-inline">at least </ins>one of the phenotypes selected in the <span style="font-style: italic;">Phenotype labels</span> parameter .<br /><br />To analyze a categorical phenotype that has <ins class="diffchange diffchange-inline">fewer than three samples</ins>, use one of the following ranking metrics:<br /></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><ul></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><ul></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Ratio_of_classes</li></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Ratio_of_classes</li></div></td></tr>
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Hkuehn
https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=1006&diff=2088&oldid=prev
Hkuehn at 19:52, 19 September 2006
2006-09-19T19:52:58Z
<p></p>
<table class="diff diff-contentalign-left" data-mw="interface">
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<col class="diff-marker" />
<col class="diff-content" />
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 19:52, 19 September 2006</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l5" >Line 5:</td>
<td colspan="2" class="diff-lineno">Line 5:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Diff_of_classes</li></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Diff_of_classes</li></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div></ul></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div></ul></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>For information about the metrics, see the <span style="font-style: italic;">Metric for ranking genes </span>parameter on the [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Run_GSEA_Page Run GSEA Page] in the <em style="">GSEA User Guide</em>.<br />For information about phenotypes, see [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Phenotypes Phenotype Labels] in the <em style="">GSEA User Guide. </em<del class="diffchange diffchange-inline">><br /</del>></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"><br /></ins>For information about the metrics, see the <span style="font-style: italic;">Metric for ranking genes </span>parameter on the [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Run_GSEA_Page Run GSEA Page] in the <em style="">GSEA User Guide</em>.<br />For information about phenotypes, see [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Phenotypes Phenotype Labels] in the <em style="">GSEA User Guide. </em></div></td></tr>
</table>
Hkuehn
https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=1006&diff=2087&oldid=prev
Hkuehn at 19:52, 19 September 2006
2006-09-19T19:52:41Z
<p></p>
<p><b>New page</b></p><div>The metric that you selected in the <span style="font-style: italic;">Metric for ranking genes </span>parameter (Signal2Noise or tTest) requires that you have at least two samples for each phenotype; however, you have only one sample for one of the phenotypes selected in the <span style="font-style: italic;">Phenotype labels</span> parameter .<br /><br />To analyze a categorical phenotype that has only one sample, use one of the following ranking metrics:<br /><br />
<ul><br />
<li>Ratio_of_classes</li><br />
<li>log2_Ratio_of_classes</li><br />
<li>Diff_of_classes</li><br />
</ul><br />
For information about the metrics, see the <span style="font-style: italic;">Metric for ranking genes </span>parameter on the [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Run_GSEA_Page Run GSEA Page] in the <em style="">GSEA User Guide</em>.<br />For information about phenotypes, see [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Phenotypes Phenotype Labels] in the <em style="">GSEA User Guide. </em><br /></div>
Hkuehn