Software Acknowledgements

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<a href="http://www.broadinstitute.org/gsea/">GSEA Home</a> | <a href="http://www.broadinstitute.org/gsea/downloads.jsp">Downloads</a> | <a href="http://www.broadinstitute.org/gsea/msigdb/">Molecular Signatures Database</a> | <a href="http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page">Documentation</a> | <a href="http://www.broadinstitute.org/gsea/contact.jsp">Contact</a>

GSEA implementations use many software tools and libraries, several of which are open source or freely available. Our thanks to their developers.

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<a href="http://www.jidesoft.com">Jide Software</a> Java/Swing components
<a href="http://www.oracle.com/technetwork/java/index.html">The Java 2 Platform Language that the GSEA desktop application is written in image:duke.gif
<a href="http://www.r-project.org/index.html">The R programming language</a> Language that the GSEAP-P-R is written in image:Rlogo.jpg
<a href="http://www.intellij.com/idea/">Intellij IDEA</a> An awesome integrated development environment for Java image:idea.png
<a href="http://www.jgoodies.com/">JGoodies</a> Forms layout and java look and feel
<a href="http://foxtrot.sourceforge.net/docs/introduction.php">foxtrot</a> Java event handling mechanism for GUI's.
<a href="http://www.dom4j.org/">dom4j</a> XML Parser
<a href="http://www.lowagie.com/iText/">itext</a> Java PDF library image:itext.gif
<a href="http://jakarta.apache.org/poi/hssf/index.html">Jakarta POI (especially HSSF)</a> Java excel reporting image: poi-logo.png
<a href="http://www.object-refinery.com/jfreechart/">JFreeChart</a> Graphing library for Java image: jfreechart.png
<a href="http://www.junit.org/index.htm">JUnit</a> Unit testing API image: junit.gif
<a href="http://jakarta.apache.org/log4j/docs/">log4j</a> Logging toolkit for Java image:log4j.jpg
<a href="http://jakarta.apache.org/oro/">Oro</a> Regular expressions library in Java Image:Oro.logo.gif
<a href="http://trove4j.sourceforge.net">Trove</a> High performance collections library from GNU
<a href="http://jakarta.apache.org/ecs">ECS</a> Element construction set (a HTML tag library from Apache Jakarta Image:Ecs-small.jpg
<a href="http://home.snafu.de/tilman/xenulink.html">Xenu link sleuth</a> Website broken link checker Image:Xenu_logo.png
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