Gene Set: LI_INDUCED_T_TO_NATURAL_KILLER_DN

Standard name LI_INDUCED_T_TO_NATURAL_KILLER_DN
Systematic name M2088
Brief description Genes down-regulated in ITNK cells (T-lymphocyte progenitors (DN3 cells) reprogrammed to natural killer (NK) cells by ablation of BCL11B [GeneID=64919] gene), compared to the parental DN3 cells.
Full description or abstract T cells develop in the thymus and are critical for adaptive immunity. Natural killer (NK) lymphocytes constitute an essential component of the innate immune system in tumor surveillance, reproduction, and defense against microbes and viruses. Here, we show that the transcription factor Bcl11b was expressed in all T cell compartments and was indispensable for T lineage development. When Bcl11b was deleted, T cells from all developmental stages acquired NK cell properties and concomitantly lost or decreased T cell-associated gene expression. These induced T-to-natural killer (ITNK) cells, which were morphologically and genetically similar to conventional NK cells, killed tumor cells in vitro, and effectively prevented tumor metastasis in vivo. Therefore, ITNKs may represent a new cell source for cell-based therapies.
Collection C2: curated gene sets
      CGP: chemical and genetic perturbations
Source publication Pubmed 20538915   Authors: Li P,Burke S,Wang J,Chen X,Ortiz M,Lee SC,Lu D,Campos L,Goulding D,Ng BL,Dougan G,Huntly B,Gottgens B,Jenkins NA,Copeland NG,Colucci F,Liu P
Exact source Table 1S: ITNK vs DN3 Ratio < 1
Related gene sets (show 1 additional gene sets from the source publication)

(show 81 gene sets from the same authors)
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Organism Mus musculus
Contributed by Arthur Liberzon (Broad Institute)
Source platform MOUSE_GENE_SYMBOL
Dataset references (show 1 datasets)
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Compendia expression profiles Human tissue compendium (Novartis)
NCI-60 cell lines (National Cancer Institute)
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Version history 3.1: First introduced

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