Gene Set: WAKABAYASHI_ADIPOGENESIS_PPARG_BOUND_36HR

Standard name WAKABAYASHI_ADIPOGENESIS_PPARG_BOUND_36HR
Systematic name M2416
Brief description Genes with promoters bound by PPARG [GeneID=5468] at 36 h time point of adipocyte differentiation of 3T3-L1 cells (preadipocyte).
Full description or abstract Control of cell differentiation occurs through transcriptional mechanisms and through epigenetic modification. Using a chromatin immunoprecipitation-on-chip approach, we performed a genome-wide search for target genes of peroxisome proliferator-activated receptor gamma (PPAR gamma) and its partner protein retinoid X receptor alpha during adipogenesis. We show that these two receptors target several genes that encode histone lysine methyltransferase SET domain proteins. The histone H4 Lys 20 (H4K20) monomethyltransferase PR-Set7/Setd8 gene is upregulated by PPAR gamma during adipogenesis, and the knockdown of PR-Set7/Setd8 suppressed adipogenesis. Intriguingly, monomethylated H4K20 (H4K20me1) levels are robustly increased toward the end of differentiation. PR-Set7/Setd8 positively regulates the expression of PPAR gamma and its targets through H4K20 monomethylation. Furthermore, the activation of PPAR gamma transcriptional activity leads to the induction of H4K20me1 modification of PPAR gamma and its targets and thereby promotes adipogenesis. We also show that PPAR gamma targets PPAR gamma2 and promotes its gene expression through H4K20 monomethylation. Our results connect transcriptional regulation and epigenetic chromatin modulation through H4K20 monomethylation during adipogenesis through a feedback loop.
Collection C2: curated gene sets
      CGP: chemical and genetic perturbations
Source publication Pubmed 19414603   Authors: Wakabayashi K,Okamura M,Tsutsumi S,Nishikawa NS,Tanaka T,Sakakibara I,Kitakami J,Ihara S,Hashimoto Y,Hamakubo T,Kodama T,Aburatani H,Sakai J
Exact source Table 1S_2
Related gene sets (show 4 additional gene sets from the source publication)

(show 33 gene sets from the same authors)
External links  
Organism Mus musculus
Contributed by Arthur Liberzon (Broad Institute)
Source platform SEQ_ACCESSION
Dataset references  
Download gene set format: grp | text | gmt | gmx | xml
Compute overlaps (show collections to investigate for overlap with this gene set)
Compendia expression profiles Human tissue compendium (Novartis)
NCI-60 cell lines (National Cancer Institute)
Advanced query Further investigate these 29 genes
Gene families Categorize these 29 genes by gene family
Show members (show 30 members mapped to 29 genes)
Version history 3.1: First introduced

See MSigDB license terms here. Please note that certain gene sets have special access terms.