Browse Gene Sets

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[about the MSigDB collections]

  • H (hallmark gene sets, 50 gene sets)
  • C1 (positional gene sets, 326 gene sets)
  • C2 (curated gene sets, 4762 gene sets)
    • CGP (chemical and genetic perturbations, 3433 gene sets)
    • CP (Canonical pathways, 1329 gene sets)
    • CP:BIOCARTA (BioCarta gene sets, 217 gene sets)
    • CP:KEGG (KEGG gene sets, 186 gene sets)
    • CP:REACTOME (Reactome gene sets, 674 gene sets)
  • C3 (motif gene sets, 836 gene sets)
    • MIR (microRNA targets, 221 gene sets)
    • TFT (transcription factor targets, 615 gene sets)
  • C4 (computational gene sets, 858 gene sets)
    • CGN (cancer gene neighborhoods, 427 gene sets)
    • CM (cancer modules, 431 gene sets)
  • C5 (GO gene sets, 5917 gene sets)
    • BP (GO biological process, 4436 gene sets)
    • CC (GO cellular component, 580 gene sets)
    • MF (GO molecular function, 901 gene sets)
  • C6 (oncogenic signatures, 189 gene sets)
  • C7 (immunologic signatures, 4872 gene sets)

Click on a gene set name to view its gene set page.

AKT_UP.V1_DN
AKT_UP.V1_UP
AKT_UP_MTOR_DN.V1_DN
AKT_UP_MTOR_DN.V1_UP
ALK_DN.V1_DN
ALK_DN.V1_UP
ATF2_S_UP.V1_DN
ATF2_S_UP.V1_UP
ATF2_UP.V1_DN
ATF2_UP.V1_UP
ATM_DN.V1_DN
ATM_DN.V1_UP
BCAT.100_UP.V1_DN
BCAT.100_UP.V1_UP
BCAT_BILD_ET_AL_DN
BCAT_BILD_ET_AL_UP
BCAT_GDS748_DN
BCAT_GDS748_UP
BMI1_DN.V1_DN
BMI1_DN.V1_UP
BMI1_DN_MEL18_DN.V1_DN
BMI1_DN_MEL18_DN.V1_UP
BRCA1_DN.V1_DN
BRCA1_DN.V1_UP
CAHOY_ASTROCYTIC
CAHOY_ASTROGLIAL
CAHOY_NEURONAL
CAHOY_OLIGODENDROCUTIC
CAMP_UP.V1_DN
CAMP_UP.V1_UP
CORDENONSI_YAP_CONSERVED_SIGNATURE
CRX_DN.V1_DN
CRX_DN.V1_UP
CRX_NRL_DN.V1_DN
CRX_NRL_DN.V1_UP
CSR_EARLY_UP.V1_DN
CSR_EARLY_UP.V1_UP
CSR_LATE_UP.V1_DN
CSR_LATE_UP.V1_UP
CTIP_DN.V1_DN
CTIP_DN.V1_UP
CYCLIN_D1_KE_.V1_DN
CYCLIN_D1_KE_.V1_UP
CYCLIN_D1_UP.V1_DN
CYCLIN_D1_UP.V1_UP
DCA_UP.V1_DN
DCA_UP.V1_UP
E2F1_UP.V1_DN
E2F1_UP.V1_UP
E2F3_UP.V1_DN
E2F3_UP.V1_UP
EGFR_UP.V1_DN
EGFR_UP.V1_UP
EIF4E_DN
EIF4E_UP
ERB2_UP.V1_DN
ERB2_UP.V1_UP
ESC_J1_UP_EARLY.V1_DN
ESC_J1_UP_EARLY.V1_UP
ESC_J1_UP_LATE.V1_DN
ESC_J1_UP_LATE.V1_UP
ESC_V6.5_UP_EARLY.V1_DN
ESC_V6.5_UP_EARLY.V1_UP
ESC_V6.5_UP_LATE.V1_DN
ESC_V6.5_UP_LATE.V1_UP
GCNP_SHH_UP_EARLY.V1_DN
GCNP_SHH_UP_EARLY.V1_UP
GCNP_SHH_UP_LATE.V1_DN
GCNP_SHH_UP_LATE.V1_UP
GLI1_UP.V1_DN
GLI1_UP.V1_UP
HINATA_NFKB_IMMU_INF
HINATA_NFKB_MATRIX
HOXA9_DN.V1_DN
HOXA9_DN.V1_UP
IL15_UP.V1_DN
IL15_UP.V1_UP
IL21_UP.V1_DN
IL21_UP.V1_UP
IL2_UP.V1_DN
IL2_UP.V1_UP
JAK2_DN.V1_DN
JAK2_DN.V1_UP
JNK_DN.V1_DN
JNK_DN.V1_UP
KRAS.300_UP.V1_DN
KRAS.300_UP.V1_UP
KRAS.50_UP.V1_DN
KRAS.50_UP.V1_UP
KRAS.600.LUNG.BREAST_UP.V1_DN
KRAS.600.LUNG.BREAST_UP.V1_UP
KRAS.600_UP.V1_DN
KRAS.600_UP.V1_UP
KRAS.AMP.LUNG_UP.V1_DN
KRAS.AMP.LUNG_UP.V1_UP
KRAS.BREAST_UP.V1_DN
KRAS.BREAST_UP.V1_UP
KRAS.DF.V1_DN
KRAS.DF.V1_UP
KRAS.KIDNEY_UP.V1_DN
KRAS.KIDNEY_UP.V1_UP
KRAS.LUNG.BREAST_UP.V1_DN
KRAS.LUNG.BREAST_UP.V1_UP
KRAS.LUNG_UP.V1_DN
KRAS.LUNG_UP.V1_UP
KRAS.PROSTATE_UP.V1_DN
KRAS.PROSTATE_UP.V1_UP
LEF1_UP.V1_DN
LEF1_UP.V1_UP
LTE2_UP.V1_DN
LTE2_UP.V1_UP
MEK_UP.V1_DN
MEK_UP.V1_UP
MEL18_DN.V1_DN
MEL18_DN.V1_UP
MTOR_UP.N4.V1_DN
MTOR_UP.N4.V1_UP
MTOR_UP.V1_DN
MTOR_UP.V1_UP
MYC_UP.V1_DN
MYC_UP.V1_UP
NFE2L2.V2
NOTCH_DN.V1_DN
NOTCH_DN.V1_UP
NRL_DN.V1_DN
NRL_DN.V1_UP
P53_DN.V1_DN
P53_DN.V1_UP
P53_DN.V2_DN
P53_DN.V2_UP
PDGF_ERK_DN.V1_DN
PDGF_ERK_DN.V1_UP
PDGF_UP.V1_DN
PDGF_UP.V1_UP
PIGF_UP.V1_DN
PIGF_UP.V1_UP
PKCA_DN.V1_DN
PKCA_DN.V1_UP
PRC1_BMI_UP.V1_DN
PRC1_BMI_UP.V1_UP
PRC2_EED_UP.V1_DN
PRC2_EED_UP.V1_UP
PRC2_EZH2_UP.V1_DN
PRC2_EZH2_UP.V1_UP
PRC2_SUZ12_UP.V1_DN
PRC2_SUZ12_UP.V1_UP
PTEN_DN.V1_DN
PTEN_DN.V1_UP
PTEN_DN.V2_DN
PTEN_DN.V2_UP
RAF_UP.V1_DN
RAF_UP.V1_UP
RAPA_EARLY_UP.V1_DN
RAPA_EARLY_UP.V1_UP
RB_DN.V1_DN
RB_DN.V1_UP
RB_P107_DN.V1_DN
RB_P107_DN.V1_UP
RB_P130_DN.V1_DN
RB_P130_DN.V1_UP
RELA_DN.V1_DN
RELA_DN.V1_UP
RPS14_DN.V1_DN
RPS14_DN.V1_UP
SINGH_KRAS_DEPENDENCY_SIGNATURE_
SIRNA_EIF4GI_DN
SIRNA_EIF4GI_UP
SNF5_DN.V1_DN
SNF5_DN.V1_UP
SRC_UP.V1_DN
SRC_UP.V1_UP
STK33_DN
STK33_NOMO_DN
STK33_NOMO_UP
STK33_SKM_DN
STK33_SKM_UP
STK33_UP
TBK1.DF_DN
TBK1.DF_UP
TBK1.DN.48HRS_DN
TBK1.DN.48HRS_UP
TGFB_UP.V1_DN
TGFB_UP.V1_UP
VEGF_A_UP.V1_DN
VEGF_A_UP.V1_UP
WNT_UP.V1_DN
WNT_UP.V1_UP
YAP1_DN
YAP1_UP