Browse Gene Sets

Gene set name:

 

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By collection:

[about the MSigDB collections]

  • H (hallmark gene sets, 50 gene sets)
  • C1 (positional gene sets, 326 gene sets)
  • C2 (curated gene sets, 4762 gene sets)
    • CGP (chemical and genetic perturbations, 3433 gene sets)
    • CP (Canonical pathways, 1329 gene sets)
    • CP:BIOCARTA (BioCarta gene sets, 217 gene sets)
    • CP:KEGG (KEGG gene sets, 186 gene sets)
    • CP:REACTOME (Reactome gene sets, 674 gene sets)
  • C3 (motif gene sets, 836 gene sets)
    • MIR (microRNA targets, 221 gene sets)
    • TFT (transcription factor targets, 615 gene sets)
  • C4 (computational gene sets, 858 gene sets)
    • CGN (cancer gene neighborhoods, 427 gene sets)
    • CM (cancer modules, 431 gene sets)
  • C5 (GO gene sets, 5917 gene sets)
    • BP (GO biological process, 4436 gene sets)
    • CC (GO cellular component, 580 gene sets)
    • MF (GO molecular function, 901 gene sets)
  • C6 (oncogenic signatures, 189 gene sets)
  • C7 (immunologic signatures, 4872 gene sets)

Click on a gene set name to view its gene set page.

AAANWWTGC_UNKNOWN
AAAYRNCTG_UNKNOWN
AAAYWAACM_HFH4_01
AACTTT_UNKNOWN
AACWWCAANK_UNKNOWN
AACYNNNNTTCCS_UNKNOWN
AAGWWRNYGGC_UNKNOWN
ACAWNRNSRCGG_UNKNOWN
ACAWYAAAG_UNKNOWN
ACCTGTTG_UNKNOWN
ACTAYRNNNCCCR_UNKNOWN
ACTWSNACTNY_UNKNOWN
AFP1_Q6
AGCYRWTTC_UNKNOWN
AHR_01
AHR_Q5
AHRARNT_01
AHRARNT_02
ALPHACP1_01
ALX4_01
AMEF2_Q6
AML1_01
AML1_Q6
AML_Q6
AP1_01
AP1_C
AP1_Q2
AP1_Q2_01
AP1_Q4
AP1_Q4_01
AP1_Q6
AP1_Q6_01
AP1FJ_Q2
AP2_Q3
AP2_Q6
AP2_Q6_01
AP2ALPHA_01
AP2GAMMA_01
AP2REP_01
AP3_Q6
AP4_01
AP4_Q5
AP4_Q6
AP4_Q6_01
AR_01
AR_02
AR_03
AR_Q2
AR_Q6
AREB6_01
AREB6_02
AREB6_03
AREB6_04
ARGGGTTAA_UNKNOWN
ARNT_01
ARNT_02
ARP1_01
ATCMNTCCGY_UNKNOWN
ATF1_Q6
ATF3_Q6
ATF4_Q2
ATF6_01
ATF_01
ATF_B
ATGGYGGA_UNKNOWN
BACH1_01
BACH2_01
BRN2_01
CACBINDINGPROTEIN_Q6
CACCCBINDINGFACTOR_Q6
CACGTG_MYC_Q2
CAGCTG_AP4_Q5
CAGGTA_AREB6_01
CAGGTG_E12_Q6
CAGNWMCNNNGAC_UNKNOWN
CAGNYGKNAAA_UNKNOWN
CART1_01
CATRRAGC_UNKNOWN
CATTGTYY_SOX9_B1
CCAATNNSNNNGCG_UNKNOWN
CCANNAGRKGGC_UNKNOWN
CCAWNWWNNNGGC_UNKNOWN
CCAWWNAAGG_SRF_Q4
CCAWYNNGAAR_UNKNOWN
CCCNNGGGAR_OLF1_01
CCCNNNNNNAAGWT_UNKNOWN
CCGNMNNTNACG_UNKNOWN
CCTNTMAGA_UNKNOWN
CDC5_01
CDP_01
CDP_02
CDPCR1_01
CDPCR3_01
CDPCR3HD_01
CDX2_Q5
CEBP_01
CEBP_C
CEBP_Q2
CEBP_Q2_01
CEBP_Q3
CEBPA_01
CEBPB_01
CEBPB_02
CEBPDELTA_Q6
CEBPGAMMA_Q6
CETS1P54_01
CGGAARNGGCNG_UNKNOWN
CGTSACG_PAX3_B
CHOP_01
CHX10_01
CIZ_01
CMYB_01
COMP1_01
COREBINDINGFACTOR_Q6
COUP_01
COUP_DR1_Q6
CP2_01
CP2_02
CREB_01
CREB_02
CREB_Q2
CREB_Q2_01
CREB_Q3
CREB_Q4
CREB_Q4_01
CREBP1_01
CREBP1_Q2
CREBP1CJUN_01
CREL_01
CRGAARNNNNCGA_UNKNOWN
CRX_Q4
CTAWWWATA_RSRFC4_Q2
CTCNANGTGNY_UNKNOWN
CTGCAGY_UNKNOWN
CTGRYYYNATT_UNKNOWN
CTGYNNCTYTAA_UNKNOWN
CTTTAAR_UNKNOWN
CTTTGA_LEF1_Q2
CTTTGT_LEF1_Q2
CYTAGCAAY_UNKNOWN
DBP_Q6
DR1_Q3
DR3_Q4
DR4_Q2
E12_Q6
E2A_Q2
E2F1_Q3
E2F1_Q3_01
E2F1_Q4
E2F1_Q4_01
E2F1_Q6
E2F1_Q6_01
E2F1DP1_01
E2F1DP1RB_01
E2F1DP2_01
E2F4DP1_01
E2F4DP2_01
E2F_01
E2F_02
E2F_03
E2F_Q2
E2F_Q3
E2F_Q3_01
E2F_Q4
E2F_Q4_01
E2F_Q6
E2F_Q6_01
E47_01
E47_02
E4BP4_01
E4F1_Q6
EFC_Q6
EGR1_01
EGR2_01
EGR3_01
EGR_Q6
ELF1_Q6
ELK1_01
ELK1_02
EN1_01
ER_Q6
ER_Q6_01
ER_Q6_02
ERR1_Q2
ETF_Q6
ETS1_B
ETS2_B
ETS_Q4
EVI1_01
EVI1_02
EVI1_03
EVI1_04
EVI1_05
EVI1_06
FAC1_01
FOX_Q2
FOXD3_01
FOXJ2_01
FOXJ2_02
FOXM1_01
FOXO1_01
FOXO1_02
FOXO3_01
FOXO4_01
FOXO4_02
FREAC2_01
FREAC3_01
FREAC4_01
FREAC7_01
FXR_IR1_Q6
FXR_Q3
GAANYNYGACNY_UNKNOWN
GABP_B
GATA1_01
GATA1_02
GATA1_03
GATA1_04
GATA1_05
GATA2_01
GATA3_01
GATA4_Q3
GATA6_01
GATA_C
GATA_Q6
GATAAGR_GATA_C
GATGKMRGCG_UNKNOWN
GATTGGY_NFY_Q6_01
GCANCTGNY_MYOD_Q6
GCCATNTTG_YY1_Q6
GCCNNNWTAAR_UNKNOWN
GCGNNANTTCC_UNKNOWN
GCGSCMNTTT_UNKNOWN
GCM_Q2
GCTNWTTGK_UNKNOWN
GFI1_01
GGAANCGGAANY_UNKNOWN
GGAMTNNNNNTCCY_UNKNOWN
GGARNTKYCCA_UNKNOWN
GGATTA_PITX2_Q2
GGCKCATGS_UNKNOWN
GGCNKCCATNK_UNKNOWN
GGCNNMSMYNTTG_UNKNOWN
GGCNRNWCTTYS_UNKNOWN
GGGAGGRR_MAZ_Q6
GGGCGGR_SP1_Q6
GGGNNTTTCC_NFKB_Q6_01
GGGNRMNNYCAT_UNKNOWN
GGGTGGRR_PAX4_03
GGGYGTGNY_UNKNOWN
GKCGCNNNNNNNTGAYG_UNKNOWN
GNCF_01
GR_01
GR_Q6
GR_Q6_01
GRE_C
GTCNYYATGR_UNKNOWN
GTGACGY_E4F1_Q6
GTGGGTGK_UNKNOWN
GTTGNYNNRGNAAC_UNKNOWN
GTTNYYNNGGTNA_UNKNOWN
GTTRYCATRR_UNKNOWN
HAND1E47_01
HEB_Q6
HEN1_01
HEN1_02
HFH1_01
HFH3_01
HFH4_01
HFH8_01
HIF1_Q3
HIF1_Q5
HLF_01
HMEF2_Q6
HMGIY_Q6
HMX1_01
HNF1_01
HNF1_C
HNF1_Q6
HNF3_Q6
HNF3ALPHA_Q6
HNF3B_01
HNF4_01
HNF4_01_B
HNF4_DR1_Q3
HNF4_Q6
HNF4ALPHA_Q6
HNF6_Q6
HOX13_01
HOXA3_01
HOXA4_Q2
HP1SITEFACTOR_Q6
HSF1_01
HSF2_01
HSF_Q6
HTF_01
ICSBP_Q6
IK1_01
IK2_01
IK3_01
IPF1_Q4
IRF1_01
IRF1_Q6
IRF2_01
IRF7_01
IRF_Q6
ISRE_01
KCCGNSWTTT_UNKNOWN
KMCATNNWGGA_UNKNOWN
KRCTCNNNNMANAGC_UNKNOWN
KTGGYRSGAA_UNKNOWN
LBP1_Q6
LEF1_Q2
LEF1_Q6
LFA1_Q6
LHX3_01
LMO2COM_01
LMO2COM_02
LXR_DR4_Q3
LXR_Q3
LYF1_01
MAF_Q6
MAX_01
MAZ_Q6
MAZR_01
MCAATNNNNNGCG_UNKNOWN
MEF2_01
MEF2_02
MEF2_03
MEF2_04
MEF2_Q6_01
MEIS1_01
MEIS1AHOXA9_01
MEIS1BHOXA9_01
MGGAAGTG_GABP_B
MIF1_01
MMEF2_Q6
MSX1_01
MTF1_Q4
MYAATNNNNNNNGGC_UNKNOWN
MYB_Q3
MYB_Q5_01
MYB_Q6
MYC_Q2
MYCMAX_01
MYCMAX_02
MYCMAX_03
MYCMAX_B
MYOD_01
MYOD_Q6
MYOD_Q6_01
MYOGENIN_Q6
MYOGNF1_01
MZF1_01
MZF1_02
NCX_01
NERF_Q2
NF1_Q6
NF1_Q6_01
NFAT_Q4_01
NFAT_Q6
NFE2_01
NFKAPPAB65_01
NFKAPPAB_01
NFKB_C
NFKB_Q6
NFKB_Q6_01
NFMUE1_Q6
NFY_01
NFY_C
NFY_Q6
NFY_Q6_01
NGFIC_01
NKX22_01
NKX25_01
NKX25_02
NKX3A_01
NKX61_01
NKX62_Q2
NMYC_01
NRF1_Q6
NRF2_01
NRF2_Q4
NRSF_01
OCT1_01
OCT1_02
OCT1_03
OCT1_04
OCT1_05
OCT1_06
OCT1_07
OCT1_B
OCT1_Q5_01
OCT1_Q6
OCT_C
OCT_Q6
OLF1_01
OSF2_Q6
P300_01
P53_02
P53_DECAMER_Q2
PAX2_01
PAX2_02
PAX3_01
PAX3_B
PAX4_01
PAX4_02
PAX4_03
PAX4_04
PAX5_01
PAX5_02
PAX6_01
PAX8_01
PAX8_B
PAX_Q6
PBX1_01
PBX1_02
PEA3_Q6
PIT1_Q6
PITX2_Q2
POU1F1_Q6
POU3F2_01
POU3F2_02
POU6F1_01
PPAR_DR1_Q2
PPARA_01
PPARA_02
PPARG_01
PR_01
PR_02
PR_Q2
PTF1BETA_Q6
PU1_Q6
PXR_Q2
RAAGNYNNCTTY_UNKNOWN
RACCACAR_AML_Q6
RACTNNRTTTNC_UNKNOWN
RCGCANGCGY_NRF1_Q6
RFX1_01
RFX1_02
RGAANNTTC_HSF1_01
RGAGGAARY_PU1_Q6
RGTTAMWNATT_HNF1_01
RNCTGNYNRNCTGNY_UNKNOWN
RNGTGGGC_UNKNOWN
RNTCANNRNNYNATTW_UNKNOWN
ROAZ_01
RORA1_01
RORA2_01
RP58_01
RRAGTTGT_UNKNOWN
RRCCGTTA_UNKNOWN
RREB1_01
RSRFC4_01
RSRFC4_Q2
RTAAACA_FREAC2_01
RTTTNNNYTGGM_UNKNOWN
RYAAAKNNNNNNTTGW_UNKNOWN
RYCACNNRNNRNCAG_UNKNOWN
RYTAAWNNNTGAY_UNKNOWN
RYTGCNNRGNAAC_MIF1_01
RYTGCNWTGGNR_UNKNOWN
RYTTCCTG_ETS2_B
S8_01
SCGGAAGY_ELK1_02
SEF1_C
SF1_Q6
SGCGSSAAA_E2F1DP2_01
SMAD3_Q6
SMAD4_Q6
SMAD_Q6
SMTTTTGT_UNKNOWN
SNACANNNYSYAGA_UNKNOWN
SOX5_01
SOX9_B1
SP1_01
SP1_Q2_01
SP1_Q4_01
SP1_Q6
SP1_Q6_01
SP3_Q3
SPZ1_01
SREBP1_01
SREBP1_02
SREBP1_Q6
SREBP_Q3
SRF_01
SRF_C
SRF_Q4
SRF_Q5_01
SRF_Q6
SRY_01
SRY_02
STAT1_01
STAT1_02
STAT1_03
STAT3_01
STAT3_02
STAT4_01
STAT5A_01
STAT5A_02
STAT5A_03
STAT5A_04
STAT5B_01
STAT6_01
STAT6_02
STAT_01
STAT_Q6
STTTCRNTTT_IRF_Q6
SYATTGTG_UNKNOWN
T3R_Q6
TAANNYSGCG_UNKNOWN
TAATTA_CHX10_01
TAAWWATAG_RSRFC4_Q2
TAAYNRNNTCC_UNKNOWN
TAL1ALPHAE47_01
TAL1BETAE47_01
TAL1BETAITF2_01
TATA_01
TATA_C
TATAAA_TATA_01
TAXCREB_01
TAXCREB_02
TBP_01
TCANNTGAY_SREBP1_01
TCCATTKW_UNKNOWN
TCCCRNNRTGC_UNKNOWN
TCF11_01
TCF11MAFG_01
TCF1P_Q6
TCF4_Q5
TEF1_Q6
TEF_Q6
TEL2_Q6
TFIIA_Q6
TFIII_Q6
TGACAGNY_MEIS1_01
TGACATY_UNKNOWN
TGACCTTG_SF1_Q6
TGACCTY_ERR1_Q2
TGACGTCA_ATF3_Q6
TGANNYRGCA_TCF11MAFG_01
TGANTCA_AP1_C
TGASTMAGC_NFE2_01
TGATTTRY_GFI1_01
TGAYRTCA_ATF3_Q6
TGCCAAR_NF1_Q6
TGCGCANK_UNKNOWN
TGCTGAY_UNKNOWN
TGGAAA_NFAT_Q4_01
TGGNNNNNNKCCAR_UNKNOWN
TGIF_01
TGTTTGY_HNF3_Q6
TGTYNNNNNRGCARM_UNKNOWN
TITF1_Q3
TMTCGCGANR_UNKNOWN
TNCATNTCCYR_UNKNOWN
TST1_01
TTANTCA_UNKNOWN
TTANWNANTGGM_UNKNOWN
TTAYRTAA_E4BP4_01
TTCNRGNNNNTTC_HSF_Q6
TTCYNRGAA_STAT5B_01
TTCYRGAA_UNKNOWN
TTF1_Q6
TTGCWCAAY_CEBPB_02
TTGTTT_FOXO4_01
TTTNNANAGCYR_UNKNOWN
USF2_Q6
USF_01
USF_02
USF_C
USF_Q6
USF_Q6_01
VDR_Q3
VDR_Q6
WCAANNNYCAG_UNKNOWN
WCTCNATGGY_UNKNOWN
WGGAATGY_TEF1_Q6
WGTTNNNNNAAA_UNKNOWN
WHN_B
WTGAAAT_UNKNOWN
WTTGKCTG_UNKNOWN
WWTAAGGC_UNKNOWN
WYAAANNRNNNGCG_UNKNOWN
XBP1_01
YAATNANRNNNCAG_UNKNOWN
YAATNRNNNYNATT_UNKNOWN
YATGNWAAT_OCT_C
YATTNATC_UNKNOWN
YCATTAA_UNKNOWN
YGACNNYACAR_UNKNOWN
YGCANTGCR_UNKNOWN
YGCGYRCGC_UNKNOWN
YGTCCTTGR_UNKNOWN
YKACATTT_UNKNOWN
YNGTTNNNATT_UNKNOWN
YNTTTNNNANGCARM_UNKNOWN
YRCCAKNNGNCGC_UNKNOWN
YRTCANNRCGC_UNKNOWN
YTAATTAA_LHX3_01
YTAAYNGCT_UNKNOWN
YTATTTTNR_MEF2_02
YTCCCRNNAGGY_UNKNOWN
YTTCCNNNGGAMR_UNKNOWN
YWATTWNNRGCT_UNKNOWN
YY1_01
YY1_02
YY1_Q6
YYCATTCAWW_UNKNOWN
ZF5_01
ZF5_B
ZIC1_01
ZIC2_01
ZIC3_01
ZID_01