Browse Gene Sets

Gene set name:

 

By first letter:

 

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By collection:

[about the MSigDB collections]

  • H (hallmark gene sets, 50 gene sets)
  • C1 (positional gene sets, 326 gene sets)
  • C2 (curated gene sets, 4762 gene sets)
    • CGP (chemical and genetic perturbations, 3433 gene sets)
    • CP (Canonical pathways, 1329 gene sets)
    • CP:BIOCARTA (BioCarta gene sets, 217 gene sets)
    • CP:KEGG (KEGG gene sets, 186 gene sets)
    • CP:REACTOME (Reactome gene sets, 674 gene sets)
  • C3 (motif gene sets, 836 gene sets)
    • MIR (microRNA targets, 221 gene sets)
    • TFT (transcription factor targets, 615 gene sets)
  • C4 (computational gene sets, 858 gene sets)
    • CGN (cancer gene neighborhoods, 427 gene sets)
    • CM (cancer modules, 431 gene sets)
  • C5 (GO gene sets, 5917 gene sets)
    • BP (GO biological process, 4436 gene sets)
    • CC (GO cellular component, 580 gene sets)
    • MF (GO molecular function, 901 gene sets)
  • C6 (oncogenic signatures, 189 gene sets)
  • C7 (immunologic signatures, 4872 gene sets)

Gene sets starting with H

Click on a gene set name to view its gene set page.

HADDAD_B_LYMPHOCYTE_PROGENITOR
HADDAD_T_LYMPHOCYTE_AND_NK_PROGENIT
OR_DN

HADDAD_T_LYMPHOCYTE_AND_NK_PROGENIT
OR_UP

HAEGERSTRAND_RESPONSE_TO_IMATINIB
HAHTOLA_CTCL_CUTANEOUS
HAHTOLA_CTCL_PATHOGENESIS
HAHTOLA_MYCOSIS_FUNGOIDES_CD4_DN
HAHTOLA_MYCOSIS_FUNGOIDES_CD4_UP
HAHTOLA_MYCOSIS_FUNGOIDES_DN
HAHTOLA_MYCOSIS_FUNGOIDES_SKIN_DN
HAHTOLA_MYCOSIS_FUNGOIDES_SKIN_UP
HAHTOLA_MYCOSIS_FUNGOIDES_UP
HAHTOLA_SEZARY_SYNDROM_DN
HAHTOLA_SEZARY_SYNDROM_UP
HALLMARK_ADIPOGENESIS
HALLMARK_ALLOGRAFT_REJECTION
HALLMARK_ANDROGEN_RESPONSE
HALLMARK_ANGIOGENESIS
HALLMARK_APICAL_JUNCTION
HALLMARK_APICAL_SURFACE
HALLMARK_APOPTOSIS
HALLMARK_BILE_ACID_METABOLISM
HALLMARK_CHOLESTEROL_HOMEOSTASIS
HALLMARK_COAGULATION
HALLMARK_COMPLEMENT
HALLMARK_DNA_REPAIR
HALLMARK_E2F_TARGETS
HALLMARK_EPITHELIAL_MESENCHYMAL_TRA
NSITION

HALLMARK_ESTROGEN_RESPONSE_EARLY
HALLMARK_ESTROGEN_RESPONSE_LATE
HALLMARK_FATTY_ACID_METABOLISM
HALLMARK_G2M_CHECKPOINT
HALLMARK_GLYCOLYSIS
HALLMARK_HEDGEHOG_SIGNALING
HALLMARK_HEME_METABOLISM
HALLMARK_HYPOXIA
HALLMARK_IL2_STAT5_SIGNALING
HALLMARK_IL6_JAK_STAT3_SIGNALING
HALLMARK_INFLAMMATORY_RESPONSE
HALLMARK_INTERFERON_ALPHA_RESPONSE
HALLMARK_INTERFERON_GAMMA_RESPONSE
HALLMARK_KRAS_SIGNALING_DN
HALLMARK_KRAS_SIGNALING_UP
HALLMARK_MITOTIC_SPINDLE
HALLMARK_MTORC1_SIGNALING
HALLMARK_MYC_TARGETS_V1
HALLMARK_MYC_TARGETS_V2
HALLMARK_MYOGENESIS
HALLMARK_NOTCH_SIGNALING
HALLMARK_OXIDATIVE_PHOSPHORYLATION
HALLMARK_P53_PATHWAY
HALLMARK_PANCREAS_BETA_CELLS
HALLMARK_PEROXISOME
HALLMARK_PI3K_AKT_MTOR_SIGNALING
HALLMARK_PROTEIN_SECRETION
HALLMARK_REACTIVE_OXIGEN_SPECIES_PA
THWAY

HALLMARK_SPERMATOGENESIS
HALLMARK_TGF_BETA_SIGNALING
HALLMARK_TNFA_SIGNALING_VIA_NFKB
HALLMARK_UNFOLDED_PROTEIN_RESPONSE
HALLMARK_UV_RESPONSE_DN
HALLMARK_UV_RESPONSE_UP
HALLMARK_WNT_BETA_CATENIN_SIGNALING
HALLMARK_XENOBIOTIC_METABOLISM
HALMOS_CEBPA_TARGETS_DN
HALMOS_CEBPA_TARGETS_UP
HAMAI_APOPTOSIS_VIA_TRAIL_DN
HAMAI_APOPTOSIS_VIA_TRAIL_UP
HAN_JNK_SINGALING_DN
HAN_JNK_SINGALING_UP
HAN_SATB1_TARGETS_DN
HAN_SATB1_TARGETS_UP
HAND1E47_01
HANN_RESISTANCE_TO_BCL2_INHIBITOR_D
N

HANN_RESISTANCE_TO_BCL2_INHIBITOR_U
P

HANSON_HRAS_SIGNALING_VIA_NFKB
HARRIS_BRAIN_CANCER_PROGENITORS
HARRIS_HYPOXIA
HASEGAWA_TUMORIGENESIS_BY_RET_C634R
HASINA_NOL7_TARGETS_DN
HASINA_NOL7_TARGETS_UP
HASLINGER_B_CLL_WITH_11Q23_DELETION
HASLINGER_B_CLL_WITH_13Q14_DELETION
HASLINGER_B_CLL_WITH_17P13_DELETION
HASLINGER_B_CLL_WITH_6Q21_DELETION
HASLINGER_B_CLL_WITH_CHROMOSOME_12_
TRISOMY

HASLINGER_B_CLL_WITH_MUTATED_VH_GEN
ES

HATADA_METHYLATED_IN_LUNG_CANCER_DN
HATADA_METHYLATED_IN_LUNG_CANCER_UP
HE_PTEN_TARGETS_DN
HE_PTEN_TARGETS_UP
HEART_DEVELOPMENT
HEB_Q6
HECKER_IFNB1_TARGETS
HEDENFALK_BREAST_CANCER_BRACX_DN
HEDENFALK_BREAST_CANCER_BRACX_UP
HEDENFALK_BREAST_CANCER_BRCA1_VS_BR
CA2

HEDENFALK_BREAST_CANCER_HEREDITARY_
VS_SPORADIC

HEDVAT_ELF4_TARGETS_UP
HEIDENBLAD_AMPLICON_12P11_12_DN
HEIDENBLAD_AMPLICON_12P11_12_UP
HEIDENBLAD_AMPLICON_8Q24_DN
HEIDENBLAD_AMPLICON_8Q24_UP
HEIDENBLAD_AMPLIFIED_IN_BONE_CANCER
HEIDENBLAD_AMPLIFIED_IN_PANCREATIC_
CANCER

HEIDENBLAD_AMPLIFIED_IN_SOFT_TISSUE
_CANCER

HELLEBREKERS_SILENCED_DURING_TUMOR_
ANGIOGENESIS

HELLER_HDAC_TARGETS_DN
HELLER_HDAC_TARGETS_SILENCED_BY_MET
HYLATION_DN

HELLER_HDAC_TARGETS_SILENCED_BY_MET
HYLATION_UP

HELLER_HDAC_TARGETS_UP
HELLER_SILENCED_BY_METHYLATION_DN
HELLER_SILENCED_BY_METHYLATION_UP
HEMATOPOIETIN_INTERFERON_CLASSD200_
DOMAIN_CYTOKINE_RECEPTOR_ACTIVITY

HEMATOPOIETIN_INTERFERON_CLASSD200_
DOMAIN_CYTOKINE_RECEPTOR_BINDING

HEME_BIOSYNTHETIC_PROCESS
HEME_METABOLIC_PROCESS
HEMOPOIESIS
HEMOPOIETIC_OR_LYMPHOID_ORGAN_DEVEL
OPMENT

HEMOSTASIS
HEN1_01
HEN1_02
HENDRICKS_SMARCA4_TARGETS_DN
HENDRICKS_SMARCA4_TARGETS_UP
HEPARIN_BINDING
HERNANDEZ_ABERRANT_MITOSIS_BY_DOCET
ACEL_2NM_DN

HERNANDEZ_ABERRANT_MITOSIS_BY_DOCET
ACEL_2NM_UP

HERNANDEZ_ABERRANT_MITOSIS_BY_DOCET
ACEL_4NM_DN

HERNANDEZ_ABERRANT_MITOSIS_BY_DOCET
ACEL_4NM_UP

HERNANDEZ_MITOTIC_ARREST_BY_DOCETAX
EL_1_DN

HERNANDEZ_MITOTIC_ARREST_BY_DOCETAX
EL_1_UP

HERNANDEZ_MITOTIC_ARREST_BY_DOCETAX
EL_2_DN

HERNANDEZ_MITOTIC_ARREST_BY_DOCETAX
EL_2_UP

HESS_TARGETS_OF_HOXA9_AND_MEIS1_DN
HESS_TARGETS_OF_HOXA9_AND_MEIS1_UP
HESSON_TUMOR_SUPPRESSOR_CLUSTER_3P2
1_3

HETEROCYCLE_METABOLIC_PROCESS
HETEROPHILIC_CELL_ADHESION
HFH1_01
HFH3_01
HFH4_01
HFH8_01
HIF1_Q3
HIF1_Q5
HILLION_HMGA1_TARGETS
HILLION_HMGA1B_TARGETS
HINATA_NFKB_IMMU_INF
HINATA_NFKB_MATRIX
HINATA_NFKB_TARGETS_FIBROBLAST_UP
HINATA_NFKB_TARGETS_KERATINOCYTE_DN
HINATA_NFKB_TARGETS_KERATINOCYTE_UP
HIRSCH_CELLULAR_TRANSFORMATION_SIGN
ATURE_DN

HIRSCH_CELLULAR_TRANSFORMATION_SIGN
ATURE_UP

HLF_01
HMEF2_Q6
HMGIY_Q6
HMX1_01
HNF1_01
HNF1_C
HNF1_Q6
HNF3_Q6
HNF3ALPHA_Q6
HNF3B_01
HNF4_01
HNF4_01_B
HNF4_DR1_Q3
HNF4_Q6
HNF4ALPHA_Q6
HNF6_Q6
HO_LIVER_CANCER_VASCULAR_INVASION
HOEBEKE_LYMPHOID_STEM_CELL_DN
HOEBEKE_LYMPHOID_STEM_CELL_UP
HOEGERKORP_CD44_TARGETS_DIRECT_DN
HOEGERKORP_CD44_TARGETS_DIRECT_UP
HOEGERKORP_CD44_TARGETS_TEMPORAL_DN
HOEGERKORP_CD44_TARGETS_TEMPORAL_UP
HOELZEL_NF1_TARGETS_DN
HOELZEL_NF1_TARGETS_UP
HOFFMAN_CLOCK_TARGETS_DN
HOFFMAN_CLOCK_TARGETS_UP
HOFFMANN_IMMATURE_TO_MATURE_B_LYMPH
OCYTE_DN

HOFFMANN_IMMATURE_TO_MATURE_B_LYMPH
OCYTE_UP

HOFFMANN_LARGE_TO_SMALL_PRE_BII_LYM
PHOCYTE_DN

HOFFMANN_LARGE_TO_SMALL_PRE_BII_LYM
PHOCYTE_UP

HOFFMANN_PRE_BI_TO_LARGE_PRE_BII_LY
MPHOCYTE_DN

HOFFMANN_PRE_BI_TO_LARGE_PRE_BII_LY
MPHOCYTE_UP

HOFFMANN_SMALL_PRE_BII_TO_IMMATURE_
B_LYMPHOCYTE_DN

HOFFMANN_SMALL_PRE_BII_TO_IMMATURE_
B_LYMPHOCYTE_UP

HOFMANN_CELL_LYMPHOMA_DN
HOFMANN_CELL_LYMPHOMA_UP
HOFMANN_MYELODYSPLASTIC_SYNDROM_HIG
H_RISK_DN

HOFMANN_MYELODYSPLASTIC_SYNDROM_HIG
H_RISK_UP

HOFMANN_MYELODYSPLASTIC_SYNDROM_LOW
_RISK_DN

HOFMANN_MYELODYSPLASTIC_SYNDROM_LOW
_RISK_UP

HOFMANN_MYELODYSPLASTIC_SYNDROM_RIS
K_DN

HOFMANN_MYELODYSPLASTIC_SYNDROM_RIS
K_UP

HOLLEMAN_ASPARAGINASE_RESISTANCE_AL
L_DN

HOLLEMAN_ASPARAGINASE_RESISTANCE_AL
L_UP

HOLLEMAN_ASPARAGINASE_RESISTANCE_B_
ALL_DN

HOLLEMAN_ASPARAGINASE_RESISTANCE_B_
ALL_UP

HOLLEMAN_DAUNORUBICIN_ALL_DN
HOLLEMAN_DAUNORUBICIN_ALL_UP
HOLLEMAN_DAUNORUBICIN_B_ALL_DN
HOLLEMAN_DAUNORUBICIN_B_ALL_UP
HOLLEMAN_PREDNISOLONE_RESISTANCE_AL
L_DN

HOLLEMAN_PREDNISOLONE_RESISTANCE_AL
L_UP

HOLLEMAN_PREDNISOLONE_RESISTANCE_B_
ALL_DN

HOLLEMAN_PREDNISOLONE_RESISTANCE_B_
ALL_UP

HOLLEMAN_VINCRISTINE_RESISTANCE_ALL
_DN

HOLLEMAN_VINCRISTINE_RESISTANCE_ALL
_UP

HOLLEMAN_VINCRISTINE_RESISTANCE_B_A
LL_DN

HOLLEMAN_VINCRISTINE_RESISTANCE_B_A
LL_UP

HOLLERN_ADENOMYOEPITHELIAL_BREAST_T
UMOR

HOLLERN_EMT_BREAST_TUMOR_DN
HOLLERN_EMT_BREAST_TUMOR_UP
HOLLERN_MICROACINAR_BREAST_TUMOR_DN
HOLLERN_MICROACINAR_BREAST_TUMOR_UP
HOLLERN_PAPILLARY_BREAST_TUMOR
HOLLERN_SOLID_NODULAR_BREAST_TUMOR_
DN

HOLLERN_SOLID_NODULAR_BREAST_TUMOR_
UP

HOLLERN_SQUAMOUS_BREAST_TUMOR
HOLLMANN_APOPTOSIS_VIA_CD40_DN
HOLLMANN_APOPTOSIS_VIA_CD40_UP
HOMEOSTASIS_OF_NUMBER_OF_CELLS
HOMEOSTATIC_PROCESS
HOMOPHILIC_CELL_ADHESION
HONMA_DOCETAXEL_RESISTANCE
HONRADO_BREAST_CANCER_BRCA1_VS_BRCA
2

HOOI_ST7_TARGETS_DN
HOOI_ST7_TARGETS_UP
HOQUE_METHYLATED_IN_CANCER
HORIUCHI_WTAP_TARGETS_DN
HORIUCHI_WTAP_TARGETS_UP
HORMONE_BINDING
HORMONE_METABOLIC_PROCESS
HORMONE_SECRETION
HORTON_SREBF_TARGETS
HOSHIDA_LIVER_CANCER_LATE_RECURRENC
E_DN

HOSHIDA_LIVER_CANCER_LATE_RECURRENC
E_UP

HOSHIDA_LIVER_CANCER_SUBCLASS_S1
HOSHIDA_LIVER_CANCER_SUBCLASS_S2
HOSHIDA_LIVER_CANCER_SUBCLASS_S3
HOSHIDA_LIVER_CANCER_SURVIVAL_DN
HOSHIDA_LIVER_CANCER_SURVIVAL_UP
HOUSTIS_ROS
HOWLIN_CITED1_TARGETS_1_DN
HOWLIN_CITED1_TARGETS_1_UP
HOWLIN_CITED1_TARGETS_2_DN
HOWLIN_CITED1_TARGETS_2_UP
HOWLIN_PUBERTAL_MAMMARY_GLAND
HOX13_01
HOXA3_01
HOXA4_Q2
HOXA9_DN.V1_DN
HOXA9_DN.V1_UP
HP1SITEFACTOR_Q6
HSF1_01
HSF2_01
HSF_Q6
HSIAO_HOUSEKEEPING_GENES
HSIAO_LIVER_SPECIFIC_GENES
HTF_01
HU_ANGIOGENESIS_DN
HU_ANGIOGENESIS_UP
HU_GENOTOXIC_DAMAGE_24HR
HU_GENOTOXIC_DAMAGE_4HR
HU_GENOTOXIN_ACTION_DIRECT_VS_INDIR
ECT_24HR

HU_GENOTOXIN_ACTION_DIRECT_VS_INDIR
ECT_4HR

HUANG_DASATINIB_RESISTANCE_DN
HUANG_DASATINIB_RESISTANCE_UP
HUANG_FOXA2_TARGETS_DN
HUANG_FOXA2_TARGETS_UP
HUANG_GATA2_TARGETS_DN
HUANG_GATA2_TARGETS_UP
HUI_MAPK14_TARGETS_UP
HUMMEL_BURKITTS_LYMPHOMA_DN
HUMMEL_BURKITTS_LYMPHOMA_UP
HUMMERICH_BENIGN_SKIN_TUMOR_DN
HUMMERICH_BENIGN_SKIN_TUMOR_UP
HUMMERICH_MALIGNANT_SKIN_TUMOR_DN
HUMMERICH_MALIGNANT_SKIN_TUMOR_UP
HUMMERICH_SKIN_CANCER_PROGRESSION_D
N

HUMMERICH_SKIN_CANCER_PROGRESSION_U
P

HUMORAL_IMMUNE_RESPONSE
HUNSBERGER_EXERCISE_REGULATED_GENES
HUPER_BREAST_BASAL_VS_LUMINAL_DN
HUPER_BREAST_BASAL_VS_LUMINAL_UP
HUTTMANN_B_CLL_POOR_SURVIVAL_DN
HUTTMANN_B_CLL_POOR_SURVIVAL_UP
HWANG_PROSTATE_CANCER_MARKERS
HYDRO_LYASE_ACTIVITY
HYDROGEN_ION_TRANSMEMBRANE_TRANSPOR
TER_ACTIVITY

HYDROLASE_ACTIVITY_HYDROLYZING_N_GL
YCOSYL_COMPOUNDS