By collection: |
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[about the MSigDB Human collections]
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H
(hallmark gene sets, 50 gene sets)
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C1
(positional gene sets, 301 gene sets)
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C2
(curated gene sets, 7233 gene sets)
- CGP
(chemical and genetic pertubations, 3438 gene sets)
- CP
(canonical pathways, 3795 gene sets)
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C3
(regulatory gene sets, 3713 gene sets)
- MIR
(microRNA targets, 2598 gene sets)
- TFT
(all transcription factor targets, 1115 gene sets)
- TFT:GTRD
(GTRD transcription factor targets, 505 gene sets)
- TFT:TFT_LEGACY
(legacy transcription factor targets, 610 gene sets)
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C4
(computational gene sets, 1007 gene sets)
- 3CA
(Curated Cancer Cell Atlas gene sets, 149 gene sets)
- CGN
(cancer gene neighborhoods, 427 gene sets)
- CM
(cancer modules, 431 gene sets)
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C5
(ontology gene sets, 16008 gene sets)
- GO
(Gene Ontology, 10461 gene sets)
- GO:BP
(GO biological process, 7647 gene sets)
- GO:CC
(GO cellular component, 1015 gene sets)
- GO:MF
(GO molecular function, 1799 gene sets)
- HPO
(Human Phenotype Ontology, 5547 gene sets)
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C6
(oncogenic gene sets, 189 gene sets)
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C7
(immunologic gene sets, 5219 gene sets)
- IMMUNESIGDB
(ImmuneSigDB gene sets, 4872 gene sets)
- VAX
(vaccine response gene sets, 347 gene sets)
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C8
(cell type signature gene sets, 830 gene sets)
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