Browse Gene Sets

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By collection:

[about the MSigDB collections]

  • H (hallmark gene sets, 50 gene sets)
  • C1 (positional gene sets, 326 gene sets)
  • C2 (curated gene sets, 4762 gene sets)
    • CGP (chemical and genetic perturbations, 3433 gene sets)
    • CP (Canonical pathways, 1329 gene sets)
    • CP:BIOCARTA (BioCarta gene sets, 217 gene sets)
    • CP:KEGG (KEGG gene sets, 186 gene sets)
    • CP:REACTOME (Reactome gene sets, 674 gene sets)
  • C3 (motif gene sets, 836 gene sets)
    • MIR (microRNA targets, 221 gene sets)
    • TFT (transcription factor targets, 615 gene sets)
  • C4 (computational gene sets, 858 gene sets)
    • CGN (cancer gene neighborhoods, 427 gene sets)
    • CM (cancer modules, 431 gene sets)
  • C5 (GO gene sets, 5917 gene sets)
    • BP (GO biological process, 4436 gene sets)
    • CC (GO cellular component, 580 gene sets)
    • MF (GO molecular function, 901 gene sets)
  • C6 (oncogenic signatures, 189 gene sets)
  • C7 (immunologic signatures, 4872 gene sets)

Gene sets starting with N

Click on a gene set name to view its gene set page.

N_ACETYLGLUCOSAMINE_METABOLIC_PROCE
SS

NABA_BASEMENT_MEMBRANES
NABA_COLLAGENS
NABA_CORE_MATRISOME
NABA_ECM_AFFILIATED
NABA_ECM_GLYCOPROTEINS
NABA_ECM_REGULATORS
NABA_MATRISOME
NABA_MATRISOME_ASSOCIATED
NABA_PROTEOGLYCANS
NABA_SECRETED_FACTORS
NADELLA_PRKAR1A_TARGETS_DN
NADELLA_PRKAR1A_TARGETS_UP
NADERI_BREAST_CANCER_PROGNOSIS_DN
NADERI_BREAST_CANCER_PROGNOSIS_UP
NADH_DEHYDROGENASE_COMPLEX
NADLER_HYPERGLYCEMIA_AT_OBESITY
NADLER_OBESITY_DN
NADLER_OBESITY_UP
NAGASHIMA_EGF_SIGNALING_UP
NAGASHIMA_NRG1_SIGNALING_DN
NAGASHIMA_NRG1_SIGNALING_UP
NAGY_PCAF_COMPONENTS_HUMAN
NAGY_STAGA_COMPONENTS_HUMAN
NAGY_TFTC_COMPONENTS_HUMAN
NAISHIRO_CTNNB1_TARGETS_WITH_LEF1_M
OTIF

NAKAJIMA_EOSINOPHIL
NAKAJIMA_MAST_CELL
NAKAMURA_ADIPOGENESIS_EARLY_DN
NAKAMURA_ADIPOGENESIS_EARLY_UP
NAKAMURA_ADIPOGENESIS_LATE_DN
NAKAMURA_ADIPOGENESIS_LATE_UP
NAKAMURA_ALVEOLAR_EPITHELIUM
NAKAMURA_BRONCHIAL_AND_BRONCHIOLAR_
EPITHELIA

NAKAMURA_CANCER_MICROENVIRONMENT_DN
NAKAMURA_CANCER_MICROENVIRONMENT_UP
NAKAMURA_LUNG_CANCER
NAKAMURA_LUNG_CANCER_DIFFERENTIATIO
N_MARKERS

NAKAMURA_METASTASIS
NAKAMURA_METASTASIS_MODEL_DN
NAKAMURA_METASTASIS_MODEL_UP
NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_C
ENTRAL_DN

NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_C
ENTRAL_UP

NAKAYAMA_FGF2_TARGETS
NAKAYAMA_FRA2_TARGETS
NAKAYAMA_SOFT_TISSUE_TUMORS_PCA1_DN
NAKAYAMA_SOFT_TISSUE_TUMORS_PCA1_UP
NAKAYAMA_SOFT_TISSUE_TUMORS_PCA2_DN
NAKAYAMA_SOFT_TISSUE_TUMORS_PCA2_UP
NAM_FXYD5_TARGETS_DN
NATSUME_RESPONSE_TO_INTERFERON_BETA
_DN

NATSUME_RESPONSE_TO_INTERFERON_BETA
_UP

NCX_01
NEBEN_AML_WITH_FLT3_OR_NRAS_DN
NEBEN_AML_WITH_FLT3_OR_NRAS_UP
NEGATIVE_REGULATION_OF_ANGIOGENESIS
NEGATIVE_REGULATION_OF_BINDING
NEGATIVE_REGULATION_OF_BIOSYNTHETIC
_PROCESS

NEGATIVE_REGULATION_OF_CELL_ADHESIO
N

NEGATIVE_REGULATION_OF_CELL_CYCLE
NEGATIVE_REGULATION_OF_CELL_DIFFERE
NTIATION

NEGATIVE_REGULATION_OF_CELL_MIGRATI
ON

NEGATIVE_REGULATION_OF_CELL_PROLIFE
RATION

NEGATIVE_REGULATION_OF_CELLULAR_BIO
SYNTHETIC_PROCESS

NEGATIVE_REGULATION_OF_CELLULAR_COM
PONENT_ORGANIZATION_AND_BIOGENESIS

NEGATIVE_REGULATION_OF_CELLULAR_PRO
TEIN_METABOLIC_PROCESS

NEGATIVE_REGULATION_OF_CYTOKINE_BIO
SYNTHETIC_PROCESS

NEGATIVE_REGULATION_OF_CYTOSKELETON
_ORGANIZATION_AND_BIOGENESIS

NEGATIVE_REGULATION_OF_DNA_BINDING
NEGATIVE_REGULATION_OF_DNA_METABOLI
C_PROCESS

NEGATIVE_REGULATION_OF_DNA_REPLICAT
ION

NEGATIVE_REGULATION_OF_GROWTH
NEGATIVE_REGULATION_OF_HYDROLASE_AC
TIVITY

NEGATIVE_REGULATION_OF_IMMUNE_SYSTE
M_PROCESS

NEGATIVE_REGULATION_OF_MULTICELLULA
R_ORGANISMAL_PROCESS

NEGATIVE_REGULATION_OF_MYELOID_CELL
_DIFFERENTIATION

NEGATIVE_REGULATION_OF_PHOSPHATE_ME
TABOLIC_PROCESS

NEGATIVE_REGULATION_OF_PHOSPHORYLAT
ION

NEGATIVE_REGULATION_OF_PROTEIN_META
BOLIC_PROCESS

NEGATIVE_REGULATION_OF_RESPONSE_TO_
STIMULUS

NEGATIVE_REGULATION_OF_SECRETION
NEGATIVE_REGULATION_OF_TRANSCRIPTIO
N_FACTOR_ACTIVITY

NEGATIVE_REGULATION_OF_TRANSLATION
NELSON_RESPONSE_TO_ANDROGEN_DN
NELSON_RESPONSE_TO_ANDROGEN_UP
NEMETH_INFLAMMATORY_RESPONSE_LPS_DN
NEMETH_INFLAMMATORY_RESPONSE_LPS_UP
NERF_Q2
NERVOUS_SYSTEM_DEVELOPMENT
NEURITE_DEVELOPMENT
NEUROGENESIS
NEUROLOGICAL_SYSTEM_PROCESS
NEURON_APOPTOSIS
NEURON_DEVELOPMENT
NEURON_DIFFERENTIATION
NEURON_PROJECTION
NEUROPEPTIDE_BINDING
NEUROPEPTIDE_RECEPTOR_ACTIVITY
NEUROPEPTIDE_SIGNALING_PATHWAY
NEUROTRANSMITTER_BINDING
NEUROTRANSMITTER_RECEPTOR_ACTIVITY
NEWMAN_ERCC6_TARGETS_DN
NEWMAN_ERCC6_TARGETS_UP
NF1_Q6
NF1_Q6_01
NF_KAPPAB_BINDING
NFAT_Q4_01
NFAT_Q6
NFE2_01
NFE2L2.V2
NFKAPPAB65_01
NFKAPPAB_01
NFKB_C
NFKB_Q6
NFKB_Q6_01
NFMUE1_Q6
NFY_01
NFY_C
NFY_Q6
NFY_Q6_01
NGFIC_01
NGO_MALIGNANT_GLIOMA_1P_LOH
NGUYEN_NOTCH1_TARGETS_DN
NGUYEN_NOTCH1_TARGETS_UP
NICK_RESPONSE_TO_PROC_TREATMENT_DN
NICK_RESPONSE_TO_PROC_TREATMENT_UP
NIELSEN_GIST
NIELSEN_GIST_AND_SYNOVIAL_SARCOMA_D
N

NIELSEN_GIST_AND_SYNOVIAL_SARCOMA_U
P

NIELSEN_GIST_VS_SYNOVIAL_SARCOMA_DN
NIELSEN_GIST_VS_SYNOVIAL_SARCOMA_UP
NIELSEN_LEIOMYOSARCOMA_CNN1_DN
NIELSEN_LEIOMYOSARCOMA_CNN1_UP
NIELSEN_LEIOMYOSARCOMA_DN
NIELSEN_LEIOMYOSARCOMA_UP
NIELSEN_LIPOSARCOMA_DN
NIELSEN_LIPOSARCOMA_UP
NIELSEN_MALIGNAT_FIBROUS_HISTIOCYTO
MA_DN

NIELSEN_MALIGNAT_FIBROUS_HISTIOCYTO
MA_UP

NIELSEN_SCHWANNOMA_DN
NIELSEN_SCHWANNOMA_UP
NIELSEN_SYNOVIAL_SARCOMA_DN
NIELSEN_SYNOVIAL_SARCOMA_UP
NIKOLSKY_BREAST_CANCER_10Q22_AMPLIC
ON

NIKOLSKY_BREAST_CANCER_11Q12_Q14_AM
PLICON

NIKOLSKY_BREAST_CANCER_12Q13_Q21_AM
PLICON

NIKOLSKY_BREAST_CANCER_12Q24_AMPLIC
ON

NIKOLSKY_BREAST_CANCER_14Q22_AMPLIC
ON

NIKOLSKY_BREAST_CANCER_15Q26_AMPLIC
ON

NIKOLSKY_BREAST_CANCER_16P13_AMPLIC
ON

NIKOLSKY_BREAST_CANCER_16Q24_AMPLIC
ON

NIKOLSKY_BREAST_CANCER_17P11_AMPLIC
ON

NIKOLSKY_BREAST_CANCER_17Q11_Q21_AM
PLICON

NIKOLSKY_BREAST_CANCER_17Q21_Q25_AM
PLICON

NIKOLSKY_BREAST_CANCER_19P13_AMPLIC
ON

NIKOLSKY_BREAST_CANCER_19Q13.1_AMPL
ICON

NIKOLSKY_BREAST_CANCER_19Q13.4_AMPL
ICON

NIKOLSKY_BREAST_CANCER_1Q21_AMPLICO
N

NIKOLSKY_BREAST_CANCER_1Q32_AMPLICO
N

NIKOLSKY_BREAST_CANCER_20P13_AMPLIC
ON

NIKOLSKY_BREAST_CANCER_20Q11_AMPLIC
ON

NIKOLSKY_BREAST_CANCER_20Q12_Q13_AM
PLICON

NIKOLSKY_BREAST_CANCER_21Q22_AMPLIC
ON

NIKOLSKY_BREAST_CANCER_22Q13_AMPLIC
ON

NIKOLSKY_BREAST_CANCER_5P15_AMPLICO
N

NIKOLSKY_BREAST_CANCER_6P24_P22_AMP
LICON

NIKOLSKY_BREAST_CANCER_7P15_AMPLICO
N

NIKOLSKY_BREAST_CANCER_7P22_AMPLICO
N

NIKOLSKY_BREAST_CANCER_7Q21_Q22_AMP
LICON

NIKOLSKY_BREAST_CANCER_8P12_P11_AMP
LICON

NIKOLSKY_BREAST_CANCER_8Q12_Q22_AMP
LICON

NIKOLSKY_BREAST_CANCER_8Q23_Q24_AMP
LICON

NIKOLSKY_MUTATED_AND_AMPLIFIED_IN_B
REAST_CANCER

NIKOLSKY_OVERCONNECTED_IN_BREAST_CA
NCER

NING_CHRONIC_OBSTRUCTIVE_PULMONARY_
DISEASE_DN

NING_CHRONIC_OBSTRUCTIVE_PULMONARY_
DISEASE_UP

NITROGEN_COMPOUND_BIOSYNTHETIC_PROC
ESS

NITROGEN_COMPOUND_CATABOLIC_PROCESS
NITROGEN_COMPOUND_METABOLIC_PROCESS
NKX22_01
NKX25_01
NKX25_02
NKX3A_01
NKX61_01
NKX62_Q2
NMYC_01
NOJIMA_SFRP2_TARGETS_DN
NOJIMA_SFRP2_TARGETS_UP
NON_MEMBRANE_BOUND_ORGANELLE
NOTCH_DN.V1_DN
NOTCH_DN.V1_UP
NOTCH_SIGNALING_PATHWAY
NOUSHMEHR_GBM_GERMLINE_MUTATED
NOUSHMEHR_GBM_SILENCED_BY_METHYLATI
ON

NOUSHMEHR_GBM_SOMATIC_MUTATED
NOUZOVA_METHYLATED_IN_APL
NOUZOVA_TRETINOIN_AND_H4_ACETYLATIO
N

NRF1_Q6
NRF2_01
NRF2_Q4
NRL_DN.V1_DN
NRL_DN.V1_UP
NRSF_01
NUCLEAR_CHROMATIN
NUCLEAR_CHROMOSOME
NUCLEAR_CHROMOSOME_PART
NUCLEAR_DNA_DIRECTED_RNA_POLYMERASE
_COMPLEX

NUCLEAR_ORGANIZATION_AND_BIOGENESIS
NUCLEAR_REPLICATION_FORK
NUCLEAR_UBIQUITIN_LIGASE_COMPLEX
NUCLEASE_ACTIVITY
NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_
NUCLEIC_ACID_TRANSMEMBRANE_TRANSPOR
TER_ACTIVITY

NUCLEOLAR_PART
NUCLEOTIDE_EXCISION_REPAIR
NUCLEOTIDE_SUGAR_METABOLIC_PROCESS
NUCLEOTIDYLTRANSFERASE_ACTIVITY
NUMATA_CSF3_SIGNALING_VIA_STAT3
NUNODA_RESPONSE_TO_DASATINIB_IMATIN
IB_DN

NUNODA_RESPONSE_TO_DASATINIB_IMATIN
IB_UP

NUTT_GBM_VS_AO_GLIOMA_DN
NUTT_GBM_VS_AO_GLIOMA_UP
NUYTTEN_EZH2_TARGETS_DN
NUYTTEN_EZH2_TARGETS_UP
NUYTTEN_NIPP1_TARGETS_DN
NUYTTEN_NIPP1_TARGETS_UP