DatasetLeukemia_collapsed.gct
PhenotypeAML
GeneSetC1.symbols.gmt#chr15q25
Enrichment Score (ES)-0.43130594
Normalized Enrichment Score (NES)-1.4354538
Nominal p-value0.054577466
FDR q-value1.0
FWER p-Value0.861
Table: GSEA Results Summary

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERESCORE_ENRICHMENT
1BNC1BNC1
StanfordSource,  GeneCards
basonuclin 110790.657-0.0427No
2AP3B2AP3B2
StanfordSource,  GeneCards
adaptor-related protein complex 3, beta 2 subunit11540.6410.0131No
3PSMA4PSMA4
StanfordSource,  GeneCards
proteasome (prosome, macropain) subunit, alpha type, 413730.5940.0500No
4CHRNA5CHRNA5
StanfordSource,  GeneCards
cholinergic receptor, nicotinic, alpha polypeptide 531400.299-0.0966No
5ARNT2ARNT2
StanfordSource,  GeneCards
aryl-hydrocarbon receptor nuclear translocator 237000.217-0.1309No
6SCAND2SCAND2
StanfordSource,  GeneCards
SCAN domain containing 237830.206-0.1188No
7CHRNA3CHRNA3
StanfordSource,  GeneCards
cholinergic receptor, nicotinic, alpha polypeptide 343130.140-0.1577No
8ADAMTSL3ADAMTSL3
StanfordSource,  GeneCards
ADAMTS-like 347210.090-0.1895No
9MTHFSMTHFS
StanfordSource,  GeneCards
5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)48370.076-0.1934No
10IL16IL16
StanfordSource,  GeneCards
interleukin 16 (lymphocyte chemoattractant factor)48770.070-0.1904No
11MRPS11MRPS11
StanfordSource,  GeneCards
mitochondrial ribosomal protein S1152950.021-0.2299No
12CIB2CIB2
StanfordSource,  GeneCards
calcium and integrin binding family member 253990.007-0.2395No
13CHRNB4CHRNB4
StanfordSource,  GeneCards
cholinergic receptor, nicotinic, beta polypeptide 45748-0.035-0.2708No
14PDE8APDE8A
StanfordSource,  GeneCards
phosphodiesterase 8A5982-0.064-0.2877No
15SLC28A1SLC28A1
StanfordSource,  GeneCards
solute carrier family 28 (sodium-coupled nucleoside transporter), member 16160-0.085-0.2970No
16SH3GL3SH3GL3
StanfordSource,  GeneCards
SH3-domain GRB2-like 36322-0.101-0.3031No
17IREB2IREB2
StanfordSource,  GeneCards
iron-responsive element binding protein 26791-0.155-0.3345No
18IDH3AIDH3A
StanfordSource,  GeneCards
isocitrate dehydrogenase 3 (NAD+) alpha6887-0.167-0.3275No
19RPL9RPL9
StanfordSource,  GeneCards
ribosomal protein L97811-0.272-0.3927No
20ZNF592ZNF592
StanfordSource,  GeneCards
Zinc finger protein 5928199-0.329-0.3989Yes
21NTRK3NTRK3
StanfordSource,  GeneCards
neurotrophic tyrosine kinase, receptor, type 38214-0.331-0.3676Yes
22CRABP1CRABP1
StanfordSource,  GeneCards
cellular retinoic acid binding protein 18345-0.355-0.3456Yes
23CTSHCTSH
StanfordSource,  GeneCards
cathepsin H8744-0.435-0.3424Yes
24RPS17RPS17
StanfordSource,  GeneCards
ribosomal protein S179104-0.507-0.3281Yes
25RASGRF1RASGRF1
StanfordSource,  GeneCards
Ras protein-specific guanine nucleotide-releasing factor 19344-0.572-0.2955Yes
26BCL2A1BCL2A1
StanfordSource,  GeneCards
BCL2-related protein A19623-0.674-0.2567Yes
27STARD5STARD5
StanfordSource,  GeneCards
START domain containing 59905-0.851-0.2007Yes
28FAHFAH
StanfordSource,  GeneCards
fumarylacetoacetate hydrolase (fumarylacetoacetase)10020-1.047-0.1087Yes
29NMBNMB
StanfordSource,  GeneCards
neuromedin B10043-1.1360.0012Yes
Table: GSEA details [plain text format]



Fig 1: GSEA_Results   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List



Fig 2: Leukemia_collapsed.gct   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: Null Distribution for chr15q25   
Histogram of random enrichment scores (real ES = -0.43130594 )