DatasetLeukemia_collapsed.gct
PhenotypeALL
GeneSetC1.symbols.gmt#chr5q31
Enrichment Score (ES)0.5002536
Normalized Enrichment Score (NES)1.8509101
Nominal p-value0.0
FDR q-value0.06501713
FWER p-Value0.141
Table: GSEA Results Summary

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERESCORE_ENRICHMENT
1HNRPA0HNRPA0
StanfordSource,  GeneCards
heterogeneous nuclear ribonucleoprotein A0661.2540.0386Yes
2IKIK
StanfordSource,  GeneCards
IK cytokine, down-regulator of HLA II2071.0380.0621Yes
3DDX46DDX46
StanfordSource,  GeneCards
DEAD (Asp-Glu-Ala-Asp) box polypeptide 464190.8940.0733Yes
4VDAC1VDAC1
StanfordSource,  GeneCards
voltage-dependent anion channel 14660.8700.1000Yes
5TAF7TAF7
StanfordSource,  GeneCards
TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa5240.8410.1247Yes
6HARSHARS
StanfordSource,  GeneCards
histidyl-tRNA synthetase5510.8280.1520Yes
7ALDH7A1ALDH7A1
StanfordSource,  GeneCards
aldehyde dehydrogenase 7 family, member A16370.7990.1723Yes
8BRD8BRD8
StanfordSource,  GeneCards
bromodomain containing 86500.7960.1998Yes
9JMJD1BJMJD1B
StanfordSource,  GeneCards
jumonji domain containing 1B6540.7940.2281Yes
10PHF15PHF15
StanfordSource,  GeneCards
PHD finger protein 157550.7610.2456Yes
11P4HA2P4HA2
StanfordSource,  GeneCards
procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide II7940.7470.2687Yes
12FSTL4FSTL4
StanfordSource,  GeneCards
follistatin-like 48440.7260.2900Yes
13HDAC3HDAC3
StanfordSource,  GeneCards
histone deacetylase 38500.7240.3157Yes
14CNOT8CNOT8
StanfordSource,  GeneCards
CCR4-NOT transcription complex, subunit 89020.7050.3360Yes
15CTNNA1CTNNA1
StanfordSource,  GeneCards
catenin (cadherin-associated protein), alpha 1, 102kDa9270.6970.3587Yes
16NR3C1NR3C1
StanfordSource,  GeneCards
nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)11060.6500.3644Yes
17TCERG1TCERG1
StanfordSource,  GeneCards
transcription elongation regulator 1 (CA150)11220.6470.3862Yes
18SLC26A2SLC26A2
StanfordSource,  GeneCards
solute carrier family 26 (sulfate transporter), member 212790.6160.3928Yes
19HSPA4HSPA4
StanfordSource,  GeneCards
heat shock 70kDa protein 414440.5800.3974Yes
20PCDHGA12PCDHGA12
StanfordSource,  GeneCards
protocadherin gamma subfamily A, 1214470.5790.4180Yes
21C5orf1516810.5290.4138Yes
22CDC23CDC23
StanfordSource,  GeneCards
CDC23 (cell division cycle 23, yeast, homolog)16850.5290.4326Yes
23C5orf1917180.5220.4482Yes
24NDUFA2NDUFA2
StanfordSource,  GeneCards
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, 8kDa17330.5200.4656Yes
25RNF14RNF14
StanfordSource,  GeneCards
ring finger protein 1417350.5200.4843Yes
26HARSLHARSL
StanfordSource,  GeneCards
histidyl-tRNA synthetase-like17620.5150.5003Yes
27ARHGAP26ARHGAP26
StanfordSource,  GeneCards
Rho GTPase activating protein 2621340.4490.4794No
28NME5NME5
StanfordSource,  GeneCards
non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)25570.3840.4510No
29H2AFYH2AFY
StanfordSource,  GeneCards
H2A histone family, member Y27690.3490.4425No
30SEC24ASEC24A
StanfordSource,  GeneCards
SEC24 related gene family, member A (S. cerevisiae)30660.3090.4240No
31DIAPH1DIAPH1
StanfordSource,  GeneCards
diaphanous homolog 1 (Drosophila)36360.2240.3752No
32PURAPURA
StanfordSource,  GeneCards
purine-rich element binding protein A39880.1820.3466No
33SMAD5SMAD5
StanfordSource,  GeneCards
SMAD, mothers against DPP homolog 5 (Drosophila)43340.1380.3171No
34HSPA9BHSPA9B
StanfordSource,  GeneCards
heat shock 70kDa protein 9B (mortalin-2)43470.1360.3208No
35IL9IL9
StanfordSource,  GeneCards
interleukin 944680.1210.3132No
36CAMLGCAMLG
StanfordSource,  GeneCards
calcium modulating ligand45290.1120.3112No
37APBB3APBB3
StanfordSource,  GeneCards
amyloid beta (A4) precursor protein-binding, family B, member 352740.0240.2376No
38UBE2D2UBE2D2
StanfordSource,  GeneCards
ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast)5488-0.0030.2164No
39PITX1PITX1
StanfordSource,  GeneCards
paired-like homeodomain transcription factor 16182-0.0860.1502No
40KIAA0141KIAA0141
StanfordSource,  GeneCards
KIAA0141 gene product6234-0.0920.1484No
41LRRTM2LRRTM2
StanfordSource,  GeneCards
leucine-rich repeat transmembrane neuronal 2 protein6253-0.0930.1500No
42FGF1FGF1
StanfordSource,  GeneCards
fibroblast growth factor 1 (acidic)6789-0.1550.1020No
43SPOCKSPOCK
StanfordSource,  GeneCards
sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican)6843-0.1620.1026No
44PCDHA13PCDHA13
StanfordSource,  GeneCards
protocadherin alpha 136908-0.1690.1023No
45PFDN1PFDN1
StanfordSource,  GeneCards
prefoldin 17083-0.1890.0917No
46PCDHGB7PCDHGB7
StanfordSource,  GeneCards
protocadherin gamma subfamily B, 77266-0.2050.0809No
47GNPDA1GNPDA1
StanfordSource,  GeneCards
glucosamine-6-phosphate deaminase 17612-0.2450.0552No
48NPY6RNPY6R
StanfordSource,  GeneCards
neuropeptide Y receptor Y6 (pseudogene)7696-0.2560.0562No
49CDC25CCDC25C
StanfordSource,  GeneCards
cell division cycle 25C8006-0.2990.0361No
50TGFBITGFBI
StanfordSource,  GeneCards
transforming growth factor, beta-induced, 68kDa8018-0.3020.0459No
51TCF7TCF7
StanfordSource,  GeneCards
transcription factor 7 (T-cell specific, HMG-box)8155-0.3220.0439No
52PCDHA12PCDHA12
StanfordSource,  GeneCards
protocadherin alpha 128303-0.3460.0416No
53PCDH1PCDH1
StanfordSource,  GeneCards
protocadherin 1 (cadherin-like 1)8608-0.4070.0259No
54PCDHB11PCDHB11
StanfordSource,  GeneCards
protocadherin beta 118880-0.4640.0156No
55NRG2NRG2
StanfordSource,  GeneCards
neuregulin 28931-0.4740.0276No
56CD14CD14
StanfordSource,  GeneCards
CD14 antigen9003-0.4880.0381No
57GFRA3GFRA3
StanfordSource,  GeneCards
GDNF family receptor alpha 39144-0.5190.0428No
58EGR1EGR1
StanfordSource,  GeneCards
early growth response 19382-0.5850.0402No
59LECT2LECT2
StanfordSource,  GeneCards
leukocyte cell-derived chemotaxin 29775-0.7480.0280No
Table: GSEA details [plain text format]



Fig 1: GSEA_Results   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List



Fig 2: Leukemia_collapsed.gct   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: Null Distribution for chr5q31   
Histogram of random enrichment scores (real ES = 0.5002536 )