Section 5. Reference Analysis

Figure 5.1 Alignment to Reference

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Table 5.2 Scaffold Accuracy

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Table 5.3. Kmer Coverage

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Figure 5.4 Coverage Line Plot and GC

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Figure 5.5 GC Coverage Histogram

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Table 5.6 Reference Simple BAM Stats Table

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Table 5.7 Reference Sequence Coverage Stat

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Table 5.8 Physical Coverage Stats

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Figure 5.9 Insert Size

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Table 5.10 Insert Size Stats

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Figure 5.11 Comparison To Reference

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Figure 5.12 Coverage Anormaly Scatter Plot

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Figure 5.13 Coverage Anomalies Bar Plot

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Figure 5.14 Coverage Change Across Bases Scatter Plot

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Figure 5.15 Coverage Change Across Bases Histogram

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