Chr	hg18_Start	hg18_End	hg19_Start	hg19_End	Strand	Height	Width	Starts	Family	Samples	Height_2	Width_2	Repeatmasker Overlaps	Known_non-reference_Elements	UCSC_Genes_Overlaps	UCSC_Exons_Overlaps	Filled_Primer	Filler_Primer_Sequence	Empty_Primer	Empty_Primer_Sequence
chr1	8494419	8494716	8571832	8572129	-	34	297	2	noL1	"COLO1T,COLO1N"	445	297	"(T)n,AluYb8"		"RERE,KIAA0458"		c1p8494567FS	TACAACAAAGTTCTTTTTGAGCAG	c1p8494567ES	GATTGCAATTGATGATTAAGAGTG
chr1	12797779	12798831	12875192	12876244	-	2093	1052	22	L1PA4	"COLO1T,COLO1N"	5022	725	L1PA4	"LINE:dbRIP,Ewing"			c1p12798305FS	GAGTTTTTAGCATGAAGGTTTTTG	c1p12798305ES	AGCAGAAAGCAAGAAATAGCTAAG
chr1	14456990	14457389	14584403	14584802	+	47689	399	69	L1HS	"COLO1T,COLO1N"	71055	632	"L1HS,(A)n,AluY"				c1p14457189FS	GATTAAACGAATAGCAAAAGAAGC	c1p14457189ES	TAATCCATCTTGAATTGATTTTTG
chr1	21389825	21390310	21517238	21517723	-	58	485	2	noL1	"COLO1T,COLO1N"	93	485	"(CCCTAA)n,MIR,MER4A1,AluJb"				c1p21390067FS	ATAAATGCATATCTGGTTACCTCC	c1p21390067ES	ACCAAAAATACAAAAATTAGCCAG
chr1	22414301	22414678	22541714	22542091	-	10	377	5	noL1	"COLO1T,COLO1N"	23	377	"AT_rich,L1MC4a"				c1p22414489FS	AGTAGAAATGCAAATTTTACCACC	c1p22414489ES	TTTTTGTTGTTGTTTGTTTGTTTG
chr1	27407408	27407831	27534821	27535244	+	18	423	3	noL1	"COLO1T,COLO1N"	49	595	"AT_rich,L1PA4"				c1p27407619FS	TATTTTTAGTTGAGATGGGGTTTC	c1p27407619ES	ATTACCTCGTCATTTAGCATTAGG
chr1	27730124	27730326	27857537	27857739	+	19	202	7	noL1	"COLO1T,COLO1N"	56	71	"AluSg,AluY,A-rich"				c1p27730225FS	TTTCTGCTTTTTAGAGATGGTGTC	c1p27730225ES	TTTTGGATTTTATAAGCAGATTCC
chr1	29184742	29185003	29312155	29312416	-	124	261	12	L1HS	"COLO1T,COLO1N"	486	406	"L2a,L1HS,HY3,AT_rich"		EPB41		c1p29184872FS	GAAAGACATTTTAGCTGGAGAGAG	c1p29184872ES	CAGCATTTACATTGTCTTCTCATC
chr1	30814138	30814499	31041551	31041912	+	1597	361	11	L1HS	"COLO1T,COLO1N"	3958	860	"(TAAA)n,L1HS,MER65-int"	LINE:dbRIP			c1p30814318FS	CATAAACTTAGGCTTAAAGGCAAC	c1p30814318ES	GATGAGTTCATATCCTTTGTAGGG
chr1	32166578	32166918	32393991	32394331	+	73	340	2	noL1	"COLO1T,COLO1N"	5	65	AluSx		PTP4A2		c1p32166748FS	CTAATTGCTTCCCTTATCTTTCTG	c1p32166748ES	CTTTGTTTATCCCTCTACTGTTCC
chr1	32581876	32582446	32809289	32809859	-	10	570	2	noL1	"COLO1T,COLO1N"	22	65	"AluJr,AluSx1"				c1p32582161FS	TTTATTTGGCTTCAATAAATTTCC	c1p32582161ES	CATGGTGAAACCCTGTCTCTAC
chr1	34803815	34804306	35031228	35031719	-	13477	491	26	L1HS	"COLO1T,COLO1N"	34018	558	"L2a,L1HS"				c1p34804060FS	ATTTTATGCATGAAGAAACTGAGG	c1p34804060ES	TCATTCTCAGTAAACTATCGCAAG
chr1	35722772	35723053	35950185	35950466	-	350	281	13	L1HS	"COLO1T,COLO1N"	2349	383	"(TA)n,L1HS,L1ME1"		KIAA0319L		c1p35722912FS	GTTTATGCCTAAGTGTTTCATGTC	c1p35722912ES	ATAGGCCCAGCTATTAGATTTAGC
chr1	41446624	41447248	41674037	41674661	+	80290	624	87	L1HS	"COLO1T,COLO1N"	396669	634	"L1HS,L1PA6"		SCMH1		c1p41446936FS	TTTCTAGTTTATTTGCGTAGAGGC	c1p41446936ES	TGGGAGATATACCTAATGCTAGATG
chr1	42092392	42092840	42319805	42320253	-	153268	448	92	L1HS	"COLO1T,COLO1N"	398875	676	"L1HS,(TC)n"		"KRC,HIVEP3"		c1p42092616FS	TGTAAATGATGATGAATGTGTGAG	c1p42092616ES	GATGAGTTCATATCCTTTGTAGGG
chr1	42256566	42257004	42483979	42484417	+	6080	438	19	noL1	"COLO1T,COLO1N"	19020	438	"L1ME3A,MER34B"	"LINE:Ewing,Iskow"	KRC		c1p42256785FS	CAAATGAAAAGATTTTAGGTTTCC	c1p42256785ES	GTAAGCCATTTGAACATTCTCTG
chr1	48394419	48394645	48621832	48622058	+	25	226	8	L1PA2	"COLO1T,COLO1N"	92	259	L1MA4A				c1p48394532FS	AGGTCTGGAATTAGAAAGTGTGAG	c1p48394532ES	TCATTCTCAGTAAACTATCGCAAG
chr1	49250305	49250644	49477718	49478057	+	113	339	11	L1PA3	"COLO1T,COLO1N"	702	452	(CAGAGA)n		AGBL4		c1p49250474FS	TATTTTCTAGAGCTATGGGTTTGG	c1p49250474ES	TCATTCTCAGTAAACTATCGCAAG
chr1	49930858	49931012	50158271	50158425	-	24	154	3	noL1	COLO1T	0	0	AluY		AGBL4		c1p49930935FS	ATGAGAAAACTGAGGTACCAAGAG	c1p49930935ES	ATAAACTCCAGTGTTCAGAAATCC
chr1	49992483	49992603	50219896	50220016	-	1095	120	13	L1PA4	"COLO1T,COLO1N"	4943	203	"L1P2,L1PA4"		AGBL4		c1p49992543FS	TCAGTCTCTGATATCCTTTCTTCC	c1p49992543ES	AGACTTAAATGTTCCTGCTAATGG
chr1	50112867	50113114	50340280	50340527	-	191	247	11	L1PA3	"COLO1T,COLO1N"	812	515	L1PA3		AGBL4		c1p50112990FS	ATATCTTTGCAGTCTTGGAGTAGG	c1p50112990ES	ATTCTCACTCATAGGTGGAAATTG
chr1	51156133	51156501	51383545	51383913	-	35735	368	31	L1HS	"COLO1T,COLO1N"	66725	362	"AluSz6,L1HS,L1ME2"		FAF1		c1p51156317FS	AAAGGAAAGGAAAAGAAAGAAAAC	c1p51156317ES	ATGATGAGTTCATGTCCTTTGTAG
chr1	56177614	56177978	56405026	56405390	-	10765	364	28	noL1	"COLO1T,COLO1N"	14380	366		"LINE:Ewing,Iskow"			c1p56177796FS	ATGTTCTGGATAAAGGAGGGTATG	c1p56177796ES	ACCCTGACTAATACAAAGCCATAG
chr1	56179871	56180090	56407283	56407502	-	21	219	2	L1PA3	"COLO1T,COLO1N"	212	450	LTR67B				c1p56179980FS	TTTATAAGAGGAGAAAACTGAGGC	c1p56179980ES	TCATTCTCAGTAAACTATCGCAAG
chr1	56308118	56308411	56535530	56535823	-	133	293	3	noL1	"COLO1T,COLO1N"	205	296	MLT1L				c1p56308264FS	AGAATAATAGGACTTTGGGAGAGG	c1p56308264ES	AATTAGCAAAGCATACAAGTTTCC
chr1	56607494	56607968	56834906	56835380	+	29363	474	67	L1HS	"COLO1T,COLO1N"	115128	475	"L1HS,L1MC4,MER41B"	LINE:dbRIP			c1p56607731FS	TGATTACAAAAAGGAGAAAAGACC	c1p56607731ES	TCATTCTCAGTAAACTATCGCAAG
chr1	58354199	58354617	58581611	58582029	+	10628	418	31	L1HS	"COLO1T,COLO1N"	22024	422	"L1HS,MLT1J"		DAB1		c1p58354408FS	AAACATTGAAGAAGATCAAGGAAG	c1p58354408ES	GATGAGTTCATATCCTTTGTAGGG
chr1	58464160	58464684	58691572	58692096	+	235	524	15	L1PA4	"COLO1T,COLO1N"	416	734	"MIRc,L1PA4,MIR3"		DAB1		c1p58464422FS	TAAATGTCAGCTACTTTTGAGGAG	c1p58464422ES	AGGGATAGCATTAGGAGATAGACC
chr1	60517664	60518314	60745076	60745726	+	1165	650	29	L1HS	"COLO1T,COLO1N"	5548	649	"L2a,L1HS,(TG)n,L1M4"				c1p60517989FS	TTGATACCATTGTTTCATTCAGTC	c1p60517989ES	TAATGCTAGATGACACGTTAGTGG
chr1	60749254	60749560	60976666	60976972	-	167	306	4	L1PA2	"COLO1T,COLO1N"	627	499	"L1PA2,AT_rich,L1PA4"				c1p60749407FS	TTTGGAGTTGATTGTTTTGTAAAG	c1p60749407ES	TAAGAGCAGTTTATGATGAGTTCG
chr1	63477676	63478034	63705088	63705446	-	149169	358	46	L1HS	"COLO1T,COLO1N"	245363	479	"L2a,L1HS,(TTTA)n,L2"		BC040309		c1p63477855FS	TCACAGGAAAAGAGGTTCTATCTC	c1p63477855ES	TCATTCTCAGTAAACTATCGCAAG
chr1	65681938	65682286	65909350	65909698	-	4156	348	18	L1HS	"COLO1T,COLO1N"	8996	363	"LTR49,L1HS"	LINE:dbRIP	"LEPROT,LEPR"		c1p65682112FS	ATTTTCCAAATTTTCAATAGGAAC	c1p65682112ES	CTTAACACCGCATATTCTCACTC
chr1	65796716	65796876	66024128	66024288	-	17	160	8	L1PA2	"COLO1T,COLO1N"	87	180	L1PA2		"LEPROT,LEPR"		c1p65796796FS	ACTTGCCCTTGAGTTTATTTTATG	c1p65796796ES	CAAATGTCCAACAATGATAGACTG
chr1	66017117	66017267	66244529	66244679	+	105	150	3	L1PA2	"COLO1T,COLO1N"	240	326	L1MA4				c1p66017192FS	TTGAATTTGTTGAGACTTGTTTTG	c1p66017192ES	TCATTCTCAGTAAACTATCGCAAG
chr1	66101066	66101532	66328478	66328944	-	32	466	3	noL1	"COLO1T,COLO1N"	87	210	L1PA8		PDE4B		c1p66101299FS	TTTCAGAAGGAATGGTACTAGCTC	c1p66101299ES	ATACATTCTTCTCAGCAACACATC
chr1	66435201	66435374	66662613	66662786	+	66	173	4	L1PA2	"COLO1T,COLO1N"	492	437	L1PA2		PDE4B		c1p66435287FS	ATCTCTGTTAAGCCAAGAATATGG	c1p66435287ES	CCCCAATTTATTTTCTAGATGAAG
chr1	67316585	67317201	67543997	67544613	-	9320	616	23	L1HS	"COLO1T,COLO1N"	60779	636	"AluJb,L1HS"	LINE:Iskow			c1p67316893FS	AAAAATTTCCCTGTTATGCAGTAG	c1p67316893ES	TGGGAGATATACCTAATGCTAGATG
chr1	68919455	68919813	69146867	69147225	-	29	358	6	L1PA4	"COLO1T,COLO1N"	34	383	"L1MA8,L1PA4"				c1p68919634FS	TATTTAAATTCTGTTTGGGTCTGG	c1p68919634ES	CACCATGGAATACTATGCAGC
chr1	68971846	68972663	69199258	69200075	-	408436	817	138	L1HS	"COLO1T,COLO1N"	936372	967	"L2a,L1HS,AT_rich"				c1p68972254FS	TTGTTTAGAGGGAACAAATAAAGC	c1p68972254ES	TCATTCTCAGTAAACTATGGCAAG
chr1	69503778	69504113	69731190	69731525	-	10	335	3	noL1	"COLO1T,COLO1N"	16	68	"L1PA12,AluYa5,L1M5"				c1p69503945FS	TCTTTTAACTTTGTTTATGGGGTC	c1p69503945ES	CTACAGGATTTAAATACAGAGGGC
chr1	70143210	70143507	70370622	70370919	-	29	297	6	L1PA4	"COLO1T,COLO1N"	257	445	L1PA15		LRRC7		c1p70143358FS	AAAAATTTATTTTAGGTTCAGGGG	c1p70143358ES	TTTGTACAGACATGGATGAAACTG
chr1	71757944	71758345	71985356	71985757	+	1628	401	22	L1HS	"COLO1T,COLO1N"	2685	539	L1HS		NEGR1		c1p71758144FS	TTTACTAGGCAATTAGTCTGTGGC	c1p71758144ES	TCATTCTCAGTAAACTATCGCAAG
chr1	71969022	71969135	72196434	72196547	+	37	113	4	noL1	COLO1T	0	0			NEGR1		c1p71969078FS	ACCTTCTGGACCTAGAATATGTTG	c1p71969078ES	GTCTACATGTCTAACGTGCAATTC
chr1	74683473	74683913	74910885	74911325	-	338	440	9	L1PA2	"COLO1T,COLO1N"	527	441	"L1P3,L1PA2,AluYa5"		TNNI3K		c1p74683693FS	TTTAATAAATTGTGCTGGGAGAAC	c1p74683693ES	GAAACCCCGTCTCTACTAAAAATAC
chr1	74756680	74757209	74984092	74984621	-	6251	529	35	L1HS	"COLO1T,COLO1N"	11809	591	"T-rich,L1HS"	LINE:dbRIP	TNNI3K		c1p74756944FS	TCCTATTTCCACATAGCCTCTTAC	c1p74756944ES	ACACCGCATATTCTCACTCATAG
chr1	74964993	74965512	75192405	75192924	-	21622	519	26	noL1	"COLO1T,COLO1N"	47364	758	"THE1B,THE1B-int"	"LINE:Ewing,Iskow"	"CRYZ,DKFZp686C16101"		c1p74965252FS	ATCTTGATGATTAACATTTGGCTC	c1p74965252ES	TTTTTAGTAGAGATGGGGTTTCAC
chr1	75626472	75626636	75853884	75854048	+	16	164	5	L1PA2	"COLO1T,COLO1N"	26	77	"(TAAA)n,L1PA2,L1PA17"		SLC44A5		c1p75626554FS	TTAGTAGAGACAGGGTTTCACCAC	c1p75626554ES	CAAATGTCCAACAATGATAGACTG
chr1	78046074	78046465	78273486	78273877	-	143	391	11	L1HS	"COLO1T,COLO1N"	569	391	"L1HS,MLT1D,AluSx"		FAM73A		c1p78046269FS	CAACAAAATTAAAACAGCAGAAAG	c1p78046269ES	ATAATGGTCACCCAAAGATATCAG
chr1	78481201	78481872	78708613	78709284	-	2403	671	46	L1HS	"COLO1T,COLO1N"	7948	673	"L2a,L1HS,AT_rich,(T)n,MIRb"		"AX747165,BC015860"		c1p78481536FS	CTATAGCACATTTCACCATCAGAC	c1p78481536ES	TGGGAGATATACCTAATGCTAGATG
chr1	80974481	80974649	81201893	81202061	+	2387	168	8	L1PA3	"COLO1T,COLO1N"	5283	258	"L1PA3,L1MA3"				c1p80974565FS	AAATACCATTCTTCTTCTCAGCAC	c1p80974565ES	CAAATGTCCAACAATGATAGACTG
chr1	81177099	81177549	81404511	81404961	-	72	450	18	L1HS	"COLO1T,COLO1N"	315	473	"MSTD,L1HS,(GA)n,(T)n"				c1p81177324FS	AATCATGTTACATATCAACAGCAG	c1p81177324ES	TCATTCTCAGTAAACTATCGCAAG
chr1	82342123	82342369	82569535	82569781	-	23	246	2	L1PA2	"COLO1T,COLO1N"	307	416	"L1PBa,L1PA2"				c1p82342246FS	ATCTTTTAAGTGAAGCATTTAGGC	c1p82342246ES	TCATTCTCAGTAAACTATCGCAAG
chr1	82900008	82900167	83127420	83127579	+	109	159	17	noL1	"COLO1T,COLO1N"	282	157	"L1HS,A-rich"	LINE:dbRIP			c1p82900087FS	ACTGTTCAGCAAGGTCCTCTATAC	c1p82900087ES	GATGAGTTCATATCCTTTGTAGGG
chr1	85665144	85665245	85892556	85892657	+	19	101	4	noL1	"COLO1T,COLO1N"	21	422	AluJo		DDAH1		c1p85665194FS	ACAGTTAGAGATCTGATGTTTTGC	c1p85665194ES	AAATTACCTGACATCTCAAAGGAG
chr1	85992773	85993309	86220185	86220721	+	1012226	536	147	L1HS	"COLO1T,COLO1N"	2642138	574	"L1HS,L1MB3"		COL24A1		c1p85993041FS	TGTCTTGGTTTTTATTTAACTGGG	c1p85993041ES	TAATGCTAGATGACACGTTAGTGG
chr1	86031536	86031917	86258948	86259329	-	313	381	4	noL1	COLO1T	0	0	GA-rich		COL24A1		c1p86031726FS	CTCAAGACAGACTAAAGCCATTTC	c1p86031726ES	TTTTGTTTTTAAAATTTGCCTTTC
chr1	86072380	86072556	86299792	86299968	+	16	176	6	L1PA4	"COLO1T,COLO1N"	42	217	"(GA)n,L1PA4"		COL24A1		c1p86072468FS	CACTCCTTAGCATCAGACATACAC	c1p86072468ES	TAGACTGGATTAAGAAAATGTGGC
chr1	86171313	86171868	86398725	86399280	+	12517	555	43	L1HS	"COLO1T,COLO1N"	30175	685	L1HS		COL24A1		c1p86171590FS	ATTGAAAATATAATTTTGCCCTTG	c1p86171590ES	ACACCGCATATTCTCACTCATAG
chr1	86514224	86514773	86741636	86742185	+	1361	549	10	L1HS	"COLO1T,COLO1N"	1610	588	"L1HS,L1M1"	LINE:dbRIP			c1p86514498FS	AGGTAGGTACAAACAAACAAGACC	c1p86514498ES	TGGGAGATATACCTAATGCTAGATG
chr1	86916442	86917388	87143854	87144800	-	1192	946	17	L1HS	"COLO1T,COLO1N"	5930	1009	"L1HS,L1P4,L1M5"				c1p86916915FS	GACAAGGATATCCATTCTATCCAC	c1p86916915ES	GTCTTTCTTCACATATCCTGGAAC
chr1	88050075	88050534	88277487	88277946	+	14	459	3	noL1	"COLO1T,COLO1N"	13	459	(CA)n				c1p88050304FS	GAATAGCTCCTTCTTCCTTCCTAC	c1p88050304ES	AAGTATAACTTGCTTGGATTCTGC
chr1	88350296	88350429	88577708	88577841	+	299	133	3	noL1	COLO1T	0	0					c1p88350362FS	ATTACAGTTGACATTTCTGAACCC	c1p88350362ES	ACATCTGGATCTCTTACACCTACC
chr1	89984927	89985235	90212339	90212647	-	33	308	2	L1PA2	"COLO1T,COLO1N"	283	407	"L1PA2,L3,MLT1I"				c1p89985081FS	ATTACTTTAGATTTCTTTGGCAGG	c1p89985081ES	TAGACTGGATTAAGAAAATGTGGC
chr1	91480521	91480697	91707933	91708109	+	10	176	2	L1PA2	"COLO1T,COLO1N"	23	184	"LTR2,L1PA2"				c1p91480609FS	ACTCTCCCAAAAGTTACAGTAAGG	c1p91480609ES	AGTTCTAGATCCCAAGAAAATGTG
chr1	91626032	91626533	91853444	91853945	+	6185	501	28	L1HS	"COLO1T,COLO1N"	11598	557	"L1HS,AT_rich,MER21C"		HFM1		c1p91626282FS	CATTCTCATTCTTTTTGCATGTAG	c1p91626282ES	TCATTCTCAGTAAACTATCGCAAG
chr1	91687065	91687429	91914477	91914841	+	2651	364	24	L1HS	"COLO1T,COLO1N"	5996	362	L1HS	LINE:dbRIP			c1p91687247FS	GGGTATGAACCAAGAATTTAAAAC	c1p91687247ES	TCATTCTCAGTAAACTATCGCAAG
chr1	92619600	92619927	92847012	92847339	-	27	327	6	L1PA4	"COLO1T,COLO1N"	146	364	"AT_rich,L1PA4"		RPAP2		c1p92619763FS	CGCATTATCAGTTTCATACTCAAG	c1p92619763ES	TCATTCTCAGCAAACTATCACAAG
chr1	92849321	92849869	93076733	93077281	+	12	548	2	L1PA2	"COLO1T,COLO1N"	55	105	"L1MEd,AluY"		EVI5		c1p92849595FS	ATAGGCTCCATCGTATCTCACTAC	c1p92849595ES	TAATGCTAGATGACGAGTTAGTGG
chr1	94028475	94028844	94255887	94256256	-	18	369	7	L1PA2	"COLO1T,COLO1N"	50	375	"T-rich,L1PA2"		BCAR3		c1p94028659FS	AGCTGGAATTCTGTTCTTTCTATG	c1p94028659ES	TCATTCTCAGTAAACTATCGCAAG
chr1	94732270	94732658	94959682	94960070	+	17	388	3	L1PA3	"COLO1T,COLO1N"	52	388			ABCD3		c1p94732464FS	TGTTACCTCTTAGGATCTCTCCAG	c1p94732464ES	AATGCTAAATGACAAGTTAATGGG
chr1	96478810	96479202	96706222	96706614	-	52	392	3	noL1	"COLO1T,COLO1N"	125	401	L1PA3				c1p96479006FS	AAATATTCAATTTTCCTTTCCTCC	c1p96479006ES	AACTAGAAATACCATTTGACCCAG
chr1	96895512	96895621	97122924	97123033	+	15	109	6	L1PA4	"COLO1T,COLO1N"	549	217	"G-rich,L1PA4"				c1p96895566FS	TTTTTAAAATTTCAGCCTGTTCAC	c1p96895566ES	ATGCTGTTATAAAGACACATGCAC
chr1	97560371	97560620	97787783	97788032	+	27	249	5	L1PA2	"COLO1T,COLO1N"	1148	469	"(TTTG)n,L1PA2"		DPYD		c1p97560495FS	CTTCCTTTACCAAAAACATTTCAC	c1p97560495ES	TCATTCTCAGTAAACTATCGCAAG
chr1	98135896	98136253	98363308	98363665	-	292	357	5	noL1	"COLO1T,COLO1N"	1950	526	L1MEc	"LINE:Ewing,Iskow"	DPYD		c1p98136074FS	AATATTTTCTTCTTCTCTCCTCCC	c1p98136074ES	TAATGATTAGTATACGCATGTGGG
chr1	98492306	98492530	98719718	98719942	+	771	224	5	L1HS	"COLO1T,COLO1N"	1089	230	"L1HS,MIR3"				c1p98492418FS	AAATGAAGTTGTAACTGCTGAGTG	c1p98492418ES	TGGAATTCAAAATAACTCAAGTCC
chr1	98830903	98831661	99058315	99059073	+	310	758	7	noL1	"COLO1T,COLO1N"	124	549	"Tigger2,L1PA2"				c1p98831282FS	AATTCTTCTAATTCCTTTGCTGTG	c1p98831282ES	ATGATGAGTTCACATCCTTTGTAG
chr1	99451257	99451628	99678669	99679040	-	1365	371	12	L1HS	"COLO1T,COLO1N"	17154	526	"L1HS,MER67C"				c1p99451442FS	AAGCATTTTTAATTCTGTTTTTGG	c1p99451442ES	GATGAGTTCATATCCTTTGTAGGG
chr1	99626246	99626737	99853658	99854149	-	8641	491	25	L1HS	"COLO1T,COLO1N"	16746	475	"Tigger1,L1HS"				c1p99626491FS	GCTACTCCAGTGAACATACAAATG	c1p99626491ES	TCATTCTCAGTAAACTATCGCAAG
chr1	100444170	100444278	100671582	100671690	+	11	108	5	L1PA7	"COLO1T,COLO1N"	22	70	L1PA7		DBT		c1p100444224FS	AGATCTGCTCTATATTTGACATCG	c1p100444224ES	TAGACTGGATAAAGAAAATGTGGC
chr1	101663256	101663684	101890668	101891096	-	638	428	18	noL1	"COLO1T,COLO1N"	8640	429	L1PA12				c1p101663470FS	GTTTATATTCCTTATTGGTGCTGG	c1p101663470ES	GCAATCCTAAGTAAAAAGAACAGG
chr1	102469565	102469832	102696977	102697244	+	149495	267	45	L1HS	"COLO1T,COLO1N"	312501	446	"L1HS,AT_rich"				c1p102469698FS	AAAGAACTTGCATATCAGGAAAAG	c1p102469698ES	TCATTCTCAGTAAACTATCGCAAG
chr1	102862254	102863029	103089666	103090441	-	29	775	6	noL1	"COLO1T,COLO1N"	92	929	"L1PA3,Tigger2a,(T)n"				c1p102862641FS	AATGTGAAGATGAGGATAAAAACC	c1p102862641ES	TAAACAACGTGAAGCTTAGAAATG
chr1	104380764	104381290	104579241	104579767	+	838	526	22	L1HS	"COLO1T,COLO1N"	1230	526	"L1HS,(A)n"				c1p104381027FS	AAAGAAAACTAACATTCTTGGACG	c1p104381027ES	TCATTCTCAGTAAACTATCGCAAG
chr1	104382055	104382423	104580532	104580900	-	11	368	2	noL1	COLO1T	0	0					c1p104382239FS	AAACAGTCCACATATTGGCTTATC	c1p104382239ES	TCAGACTTCTAGCACAAAGAACAG
chr1	104790439	104790734	104988916	104989211	-	12	295	3	L1PA3	"COLO1T,COLO1N"	33	338	"(CA)n,L1PA3,MLT2B4"				c1p104790586FS	ACTAAAACATTGGGTTTTTGAAAG	c1p104790586ES	ATACAACATGGAATACTATGCAGC
chr1	105114333	105114457	105312810	105312934	-	2246	124	20	L1HS	"COLO1T,COLO1N"	13135	125	"L1HS,(TTTTTA)n"				c1p105114395FS	AATTTACATGAGCTGTGTATGTGC	c1p105114395ES	CAAATGTCCAACAATGATAGACTG
chr1	105187487	105188035	105385964	105386512	-	460	548	13	L1HS	"COLO1T,COLO1N"	260	548	L1HS				c1p105187761FS	TAGATATAAACAAGCTCTGCCTCC	c1p105187761ES	TGGGAGATATACCTAATGCTAGATG
chr1	106770412	106770853	106968889	106969330	+	5471	441	17	L1HS	"COLO1T,COLO1N"	12947	435	"L1HS,L1PA5,(TAAAA)n"				c1p106770632FS	TGATCTCAGCTCTCTACAACCTTC	c1p106770632ES	TCATTCTCAGTAAACTATCGCAAG
chr1	113689895	113690741	113888372	113889218	+	11999	846	17	L1HS	"COLO1T,COLO1N"	79919	928	"L1HS,L1PA4"	LINE:Ewing			c1p113690318FS	TAGTTTGCTGAGAATGATGGTTTC	c1p113690318ES	CATATGTAACTAACCTGCACAATG
chr1	113847332	113847802	114045809	114046279	+	162	470	12	L1HS	"COLO1T,COLO1N"	231	469	"L1HS,AluJo"	LINE:dbRIP	MAGI3		c1p113847567FS	TCCATTTTCCAGAAGTTTCTATTC	c1p113847567ES	TCATTCTCAGTAAACTATCGCAAG
chr1	113889801	113890077	114088278	114088554	-	344	276	4	noL1	"COLO1T,COLO1N"	181	176			MAGI3		c1p113889939FS	AAGAATAAGACATGCCAAAATGAC	c1p113889939ES	AATATATTGGATGTAGCAGCCATC
chr1	116781989	116782359	116980466	116980836	-	44	370	4	noL1	"COLO1T,COLO1N"	346	334	L1MDa	"LINE:Ewing,Iskow"			c1p116782174FS	TTCCAGCACTATGTTGAATAAGAG	c1p116782174ES	ACAAACCTCTCTAGCAAGACTGAC
chr1	117063834	117064362	117262311	117262839	+	4249	528	21	L1HS	"COLO1T,COLO1N"	38183	582	L1HS				c1p117064098FS	AAGATATGCATGGAAGTGAGATTAG	c1p117064098ES	TAATGCTAGATGACACGTTAGTGG
chr1	117946544	117947308	118145021	118145785	+	10	764	2	L1PA2	"COLO1T,COLO1N"	62	130	"L1ME3A,MLT1F1,(TAAAA)n,AT_rich"				c1p117946926FS	TAAATACACTGTGTTCTTTCTGCC	c1p117946926ES	AACTCACTAGGATGTACACAATGC
chr1	118631029	118631179	118829506	118829656	+	90	150	6	L1PA2	"COLO1T,COLO1N"	728	147	"L1PA2,AluSx"	LINE:Ewing			c1p118631104FS	AAAATAAAATATGAACAGGATGCC	c1p118631104ES	TCATCATTCTCAGTAAACTATCGC
chr1	119202450	119202890	119400927	119401367	+	143	440	18	L1HS	"COLO1T,COLO1N"	294	396	"L1HS,MER33,MLT1C,L1MA7"				c1p119202670FS	GTCTTAAATCTGACATGACTGGTG	c1p119202670ES	TCATTCTCAGTAAACTATCGCAAG
chr1	120975089	120975607	121273566	121274084	-	9886	518	45	L1HS	"COLO1T,COLO1N"	30821	865	"L1HS,FLAM_C,AluSc"		LOC647121		c1p120975348FS	ATCACGAGGTTAAGAGATTGAGAC	c1p120975348ES	TCATTCTCAGTAAACTATCGCAAG
chr1	121053483	121053880	121351960	121352357	+	117	397	4	noL1	"COLO1T,COLO1N"	6	360	ALR/Alpha				c1p121053681FS	AGTTGAACATTCCCTTTGATAGAG	c1p121053681ES	AGAATGCTTCTGTCCAGTTTTTAC
chr1	121055179	121055580	121353656	121354057	+	11	401	3	noL1	"COLO1T,COLO1N"	20	1112	ALR/Alpha				c1p121055379FS	CAGAAACTACTTTGTGATGATTGC	c1p121055379ES	CTGGGAAAGCTTCTGTTTAGTTAG
chr1	121056270	121057322	121354747	121355799	-	71	1052	8	noL1	"COLO1T,COLO1N"	519	1033	ALR/Alpha				c1p121056796FS	CTCACAAAGAAGTTTCTGAGAATG	c1p121056796ES	TGATAGTTCAGGTTTGAAACACAC
chr1	121059053	121059482	121357530	121357959	+	26	429	5	noL1	"COLO1T,COLO1N"	30	750	ALR/Alpha				c1p121059267FS	AGAAAATACTTTGGGATGATTGAG	c1p121059267ES	GAATGTTTCCGTTTAGCTTTTATG
chr1	121179826	121180369	121478303	121478846	+	2524	543	24	L1HS	"COLO1T,COLO1N"	4171	772	"L1HS,ALR/Alpha"				c1p121180097FS	CTTTTGATAGAGCAGCTTTGAAAC	c1p121180097ES	ACAAAACACCACATATTCTCACTC
chr1	121183668	121183858	121482145	121482335	+	1699	190	5	noL1	"COLO1T,COLO1N"	2080	160	ALR/Alpha				c1p121183763FS	CAGAAAATACTTTGTGATGATTGC	c1p121183763ES	AGAATGCTTCTGTCCAGTTTTTAC
chr1	121186234	121186495	121484711	121484972	+	37	261	5	noL1	"COLO1T,COLO1N"	740	1117	ALR/Alpha				c1p121186364FS	ATTTCCTTTTCTACCATTGACCTC	c1p121186364ES	TTGTGTTGTGTGTATTCAACTGAC
chr1	145399952	145400264	146933328	146933640	+	27	312	3	L1PA3	"COLO1T,COLO1N"	78	349	"L1PA3,L1MD"		"KIAA1693,NBPF1,BC036212"		c1p145400108FS	TGATTCAATTTACATGAATTGTCC	c1p145400108ES	TCATTCTCAGTAAACTATCGCAAG
chr1	147512934	147513196	149246310	149246572	-	10	262	4	L1PA3	"COLO1T,COLO1N"	15	119	"L1PA3,L1MEc"				c1p147513065FS	CTTGCATCTGCATGTTTATAGTTC	c1p147513065ES	CAAATGTCCAACAATGATAGACTG
chr1	147575019	147575333	149308395	149308709	+	400	314	10	noL1	"COLO1T,COLO1N"	3022	418		"LINE:dbRIP,Ewing,Iskow"			c1p147575176FS	CACAAAGGAGCACTTAGTGAAATC	c1p147575176ES	AATGTTCTCCTTTAACCAGTTTTG
chr1	148467605	148468305	150200981	150201681	-	15	700	2	noL1	"COLO1T,COLO1N"	18	65	"AluSq4,AluSx,L1MB7"		ANP32E	ANP32E.3	c1p148467955FS	ATAAGAGCAAAACTCCCTCTCAAC	c1p148467955ES	CAAAACAGAACAAAACAAAAACAC
chr1	148892226	148892450	150625602	150625826	-	114	224	6	noL1	"COLO1T,COLO1N"	161	69	"(A)n,AluSx,FLAM_C,L1MB4"	LINE:Iskow	GOLPH3L		c1p148892338FS	ATAATAGCACAAAGAAAGAGGGTG	c1p148892338ES	GTACATGCCTATAGTCCCAGCTAC
chr1	150710254	150710563	152443630	152443939	-	233	309	8	noL1	"COLO1T,COLO1N"	349	323	"SVA_D,MIR,MER58A"	"LINE:Ewing,Stewart"			c1p150710408FS	AACTAACAATGTCCAGTCCTTCTC	c1p150710408ES	AAATAGACATGGGAGACTTTTCAC
chr1	150728456	150729027	152461832	152462403	-	19022	571	39	L1HS	"COLO1T,COLO1N"	57700	575	"L1P3,L1HS"				c1p150728741FS	TCTCCTTTATTTATGAAGGGTTTG	c1p150728741ES	ACACCGCATATTCTCACTCATAG
chr1	151517133	151517599	153250509	153250975	-	169	466	11	L1HS	"COLO1T,COLO1N"	375	503	"L1HS,(T)n,MIRb"				c1p151517366FS	TACAAATCCCTGTCTAGATGAATG	c1p151517366ES	ACACCGCATATTCTCACTCATAG
chr1	152154791	152155402	153888167	153888778	+	111	611	5	noL1	"COLO1T,COLO1N"	353	615	"AluSc8,AluSx1"		GATAD2B		c1p152155096FS	GCATCATTGTCACTTCTGTCTTAC	c1p152155096ES	ACTGTATTTCAAAAATTAGCTGGG
chr1	154453377	154453688	156186753	156187064	+	41	311	6	noL1	"COLO1T,COLO1N"	73	313	L1PA2		PMF1		c1p154453532FS	no primer	c1p154453532ES	no primer
chr1	156505231	156505735	158238607	158239111	+	1620	504	34	L1HS	"COLO1T,COLO1N"	3207	651	"L1HS,(A)n,L1PB2"	LINE:Ewing			c1p156505483FS	CTTTGAGGTAAGTCCTTTCTATGC	c1p156505483ES	TCATTCTCAGTAAACTATCGCAAG
chr1	156750434	156750852	158483810	158484228	+	58	418	8	L1PA4	"COLO1T,COLO1N"	226	485	L1PA4				c1p156750643FS	TGCCTACTTTAAATAGCAAACAGG	c1p156750643ES	GAAACTATCGCAAGGAGAATAAAC
chr1	156878823	156879007	158612199	158612383	+	70	184	7	L1PA4	"COLO1T,COLO1N"	196	257			SPTA1	SPTA1.19	c1p156878915FS	GACTATGCCAACCTAAAACAATTC	c1p156878915ES	TCATTCTCAGCAAAGTATCACAAG
chr1	157769333	157769868	159502709	159503244	+	11734	535	47	L1HS	"COLO1T,COLO1N"	22157	535	"L1HS,AT_rich"				c1p157769600FS	AATATGAGACCAGATCCAACTTTC	c1p157769600ES	ATGAGTGCAACAAATAAAGACAAC
chr1	157810745	157811052	159544121	159544428	-	59	307	3	noL1	"COLO1T,COLO1N"	54	312	L1PA3				c1p157810898FS	TTTTAGAGTTTCCAGTTTTTCTGC	c1p157810898ES	AGGGAGTTCCCTTTCCTAGTC
chr1	159617154	159617561	161350530	161350937	+	10	407	2	noL1	"COLO1T,COLO1N"	30	407	"AluSg4,AluSq2,L1MC4a"				c1p159617357FS	GAAACCCCGTCTCTACTAAAAATAC	c1p159617357ES	TAAAAATACAAAAAGTAGCTGGGC
chr1	160426604	160426828	162159980	162160204	-	50	224	7	L1PA3	"COLO1T,COLO1N"	15	219	"L1PA3,L3"		NOS1AP		c1p160426716FS	TTGAGTTAAAACCTGAATATTGCC	c1p160426716ES	ATTTGGCAAAGGATACAAAATTAC
chr1	161498062	161498628	163231438	163232004	-	367	566	23	L1HS	"COLO1T,COLO1N"	11859	721	"L1HS,AT_rich"				c1p161498345FS	TCTCAACAACTCCCTTCTAGTACC	c1p161498345ES	GACACAGGAAGAGGAATATCACAC
chr1	163819620	163819781	165552996	165553157	-	13	161	3	noL1	"COLO1T,COLO1N"	274	283		"LINE:Ewing,Iskow,Stewart"			c1p163819700FS	no primer	c1p163819700ES	no primer
chr1	164206112	164206769	165939488	165940145	-	103656	657	53	L1HS	"COLO1T,COLO1N"	307422	679	"(T)n,L1HS,MLT1J,L1M5"				c1p164206440FS	TATACCTATGCAACAAAACTGCAC	c1p164206440ES	TGGGAGATATACCTAATGCTAGATG
chr1	164342183	164342572	166075559	166075948	+	26	389	6	L1PA4	"COLO1T,COLO1N"	29	616	"L1PA2,L1PA4,L1PA17,L1PA16"		FAM78B		c1p164342377FS	AACTTTTATTTTAGATTCAGGGGG	c1p164342377ES	TCATTCTCAGCAAAGTATCACAAG
chr1	164460859	164461315	166194235	166194691	-	62	456	12	L1PA3	"COLO1T,COLO1N"	131	438	"L1PA3,L1PA15"				c1p164461087FS	CCATCCCTTTAATTTCAGTCTATG	c1p164461087ES	TGGAAATCATCATTCTCAGTAAAC
chr1	164478433	164478965	166211809	166212341	-	21788	532	37	L1HS	"COLO1T,COLO1N"	50686	532	"L1PA3,L1HS"				c1p164478699FS	ATTTGGTTTGCCAGTATTTTATTG	c1p164478699ES	TGGGAGATATACCTAATGCTAGATG
chr1	167487309	167487474	169220685	169220850	-	34	165	5	L1PA2	"COLO1T,COLO1N"	122	165	"L1PA2,L1PB3"		NME7		c1p167487391FS	TTGACTTTCTGTCTTGATGATCTG	c1p167487391ES	TTCTCAGTAAACTGTTGCAAGAAC
chr1	167791493	167792301	169524869	169525677	+	418	808	5	noL1	"COLO1T,COLO1N"	324	808	"L2b,MIR,AT_rich"	"LINE:Ewing,Stewart"	F5		c1p167791897FS	AAGAGGAAGAAAACAAATGCATAC	c1p167791897ES	ATTTGGAAAGATTCCCTTTATTTC
chr1	170427728	170427967	172161105	172161344	-	36	239	4	L1PA3	"COLO1T,COLO1N"	136	462	L1PA5		DNM3		c1p170427847FS	TTTGTAGTTCTCCTTGAAGAGGTC	c1p170427847ES	TGGGAGATATACCTAATGCTAGATG
chr1	171216741	171217084	172950118	172950461	-	434	343	10	L1PA2	"COLO1T,COLO1N"	868	350	"L1ME5,L1PA2,L1M5"				c1p171216912FS	ATAATCGCTGAGTCATAAAGTGTG	c1p171216912ES	TCATTTTCAGTAAACTATCGCAAG
chr1	171856456	171856846	173589833	173590223	+	136	390	8	noL1	"COLO1T,COLO1N"	956	390	L1PA11		ANKRD45		c1p171856651FS	GCCTAAAGTTTTCTTTTTCTGTTG	c1p171856651ES	ACCTCAAATTAACAACCTAACACC
chr1	172468692	172469025	174202069	174202402	-	36	333	5	L1PA2	"COLO1T,COLO1N"	44	405	"CT-rich,MLT1A0"		RABGAP1L		c1p172468858FS	GAAACCCCGTCTCTACTAAAAATAC	c1p172468858ES	TCATTCTCAGTAAACTATCGCAAG
chr1	172825570	172826161	174558947	174559538	-	4745	591	19	L1HS	"COLO1T,COLO1N"	29424	591	"L1HS,MSTB1,L1MA3,(T)n"	LINE:dbRIP	RABGAP1L		c1p172825865FS	TTTATATATGTCGAGAGAAAGGGG	c1p172825865ES	TAATGCTAGATGACACGTTAGTGG
chr1	173561763	173561921	175295140	175295298	+	17	158	3	L1PA5	"COLO1T,COLO1N"	469	395	"L1PA5,L3"		TNR		c1p173561842FS	ACTCTAGATGGGCATAAAAATCTG	c1p173561842ES	TCATTCTCAGCAAACTATCTCAAG
chr1	174491430	174491902	176224807	176225279	-	596	472	17	L1PA2	"COLO1T,COLO1N"	1140	450	"L1PA2,L1MA5"				c1p174491666FS	TTACTGTTCTTTCACTTCCAGATG	c1p174491666ES	TCATTCTCAGTAAACTATCGCAAG
chr1	174543919	174544033	176277296	176277410	-	11	114	2	L1PA3	"COLO1T,COLO1N"	47	282					c1p174543976FS	TTGTGGTTAGAAGAGAAAAAGACC	c1p174543976ES	AACACTGCATGTTCTCACTCATAG
chr1	174549697	174550243	176283074	176283620	-	12	546	3	noL1	"COLO1T,COLO1N"	18	65	"AluSz6,L1PA3,MSTB1"				c1p174549970FS	ATTTAAGTCTGCAGAGGTTACTGC	c1p174549970ES	AGGTCAGTAGTTCTAGACCAGCC
chr1	174988081	174988744	176721458	176722121	+	2225	663	20	L1HS	"COLO1T,COLO1N"	4953	777	L1HS		"PAPPA2,PAPPE"		c1p174988412FS	CTTTCTACTGCATCCCTCTACTTC	c1p174988412ES	TAATGCTAGATGACACGTTAGTGG
chr1	175644278	175644556	177377655	177377933	-	35	278	5	L1PA2	"COLO1T,COLO1N"	62	359	"L2a,L1PA2,(T)n"				c1p175644417FS	TAGCCATGTAAGGTCTTTTAGTCC	c1p175644417ES	TAGACTGGATTAAGAAAATGTGGC
chr1	177841789	177842028	179575166	179575405	-	390	239	7	noL1	"COLO1T,COLO1N"	44	243	L1MC1	"LINE:Beck,Ewing,Iskow"	TDRD5	TDRD5.F	c1p177841908FS	TAGTTTTGCTTTTTCCAGAGAGTC	c1p177841908ES	CTAGACCTTACACCCTTCACAAAC
chr1	178934435	178935025	180667812	180668402	-	71175	590	67	L1HS	"COLO1T,COLO1N"	133543	751	"L1M2,L1HS"		XPR1		c1p178934730FS	CTTCTGTTCTTGTTTATCATGTGG	c1p178934730ES	TAATGCTAGATGACACGTTAGTGG
chr1	179102204	179102556	180835581	180835933	-	15	352	6	L1HS	"COLO1T,COLO1N"	716	571	HAL1	LINE:dbRIP	XPR1		c1p179102380FS	ATAAAATTCATCCAGCTTGAAAAG	c1p179102380ES	TCATTCTCAGTAAACTATCGCAAG
chr1	180212912	180213172	181946289	181946549	+	22	260	7	L1PA8	"COLO1T,COLO1N"	22	260	"L1PA8,L1PA4"				c1p180213042FS	CTAATTTTATTGCACTGTGGTCTG	c1p180213042ES	TAGTGTGCAAAATAACCAGATAGC
chr1	181892707	181893077	183626084	183626454	-	185	370	9	L1PA4	"COLO1T,COLO1N"	834	380	"L1M2,L1PA4"		RGL1		c1p181892892FS	ACTGGAGATGCTTTGAACCTATTC	c1p181892892ES	AACACTGCATGTTCTCACTCATAG
chr1	181899951	181900150	183633328	183633527	+	14	199	4	L1PA3	"COLO1T,COLO1N"	34	196	"L1M2,L1PA3"		RGL1		c1p181900050FS	TAAGCAATTACAGCAAGGTTACAG	c1p181900050ES	ATGATGAGTTCATGTCCTTTGTAG
chr1	182466701	182467257	184200078	184200634	-	14	556	3	L1PA4	"COLO1T,COLO1N"	44	556	"L1PA4,AluY"				c1p182466979FS	CTCTCTGTTTGTCTGTTATTGGTG	c1p182466979ES	ATCACAAGGTCAGGAGATAGACAC
chr1	183087349	183087661	184820726	184821038	+	1943	312	21	L1HS	"COLO1T,COLO1N"	2190	531	"L1HS,AT_rich"	LINE:dbRIP	"NIBAN,FAM129A"		c1p183087505FS	GATCTCTTCTGAGTAAACCACACC	c1p183087505ES	TCATTCTCAGTAAACTATCGCAAG
chr1	184460832	184460939	186194209	186194316	+	15	107	5	noL1	"COLO1T,COLO1N"	15	441	MER41-int				c1p184460885FS	TTCCCATGCTTTCTTATCTTTTAC	c1p184460885ES	ATTCCTGGCTTAGAAAATAAGTCC
chr1	184879070	184879490	186612447	186612867	+	5332	420	31	L1PA2	"COLO1T,COLO1N"	14269	443	"L2c,L1PA2"				c1p184879280FS	GAGGGACACTAATGAGATTACTCG	c1p184879280ES	ACACTGCATATTCTCACTCATAGG
chr1	185579190	185579578	187312567	187312955	-	1189	388	17	L1HS	"COLO1T,COLO1N"	2874	390	"T-rich,L1HS,AT_rich"				c1p185579384FS	AATAAAATTGGCTATGCAAGTACC	c1p185579384ES	GATGAGTTCATATCCTTTGTAGGG
chr1	185776035	185776324	187509412	187509701	-	35	289	7	L1PA3	"COLO1T,COLO1N"	107	660					c1p185776179FS	TTTATCATCCACAAATACTGATGC	c1p185776179ES	ACACCGCATATTCTCACTCATAG
chr1	185839393	185839561	187572770	187572938	+	79	168	17	L1HS	"COLO1T,COLO1N"	364	194	"L1HS,(A)n,MER21A"	LINE:dbRIP			c1p185839477FS	ATATATAACCCTAGCCCACCTAGC	c1p185839477ES	CAAATGTCCAACAATGATAGACTG
chr1	186058873	186059073	187792250	187792450	-	1197	200	20	L1PA2	"COLO1T,COLO1N"	5016	397	L1PBa				c1p186058973FS	GTCTTTTCTTCATCTTGGCTTTAG	c1p186058973ES	TGGAAATCATCATTCTCAGTAAAC
chr1	186266684	186266926	188000061	188000303	-	53	242	5	L1PA3	"COLO1T,COLO1N"	225	393	L1PA3				c1p186266805FS	AGATAAGTGGAAATTAAAACGTGG	c1p186266805ES	CAAATGTCCAACAATGATAGACTG
chr1	188965676	188966015	190699053	190699392	-	32	339	6	L1PA2	"COLO1T,COLO1N"	160	597	L1MA5				c1p188965845FS	no primer	c1p188965845ES	no primer
chr1	189239275	189239536	190972652	190972913	-	82	261	5	noL1	"COLO1T,COLO1N"	204	259	L1MA1	"LINE:Ewing,Iskow"			c1p189239405FS	TATAAAAATGATAGCCCATCACAC	c1p189239405ES	TCACATTTTCTCACTTATTTGTGG
chr1	190338352	190338956	192071729	192072333	-	18791	604	21	L1HS	"COLO1T,COLO1N"	115074	1020	L1HS				c1p190338654FS	ACCACTGACTTAAGTTTTCTCACC	c1p190338654ES	GATCTCTTATTTCAGGACAACCAG
chr1	190528474	190528922	192261851	192262299	-	2014	448	17	noL1	"COLO1T,COLO1N"	8130	357	L1MA2	"LINE:Ewing,Iskow"			c1p190528698FS	AAAACTCTTTTTAATTTTTGTGGG	c1p190528698ES	GAAACCCCATCTCTACTACAAATC
chr1	190918605	190918990	192651982	192652367	-	11	385	3	L1PA5	"COLO1T,COLO1N"	13	181	"L2a,L1PA5"				c1p190918797FS	AACATCATGCATACTCAGGTACAC	c1p190918797ES	AACTAGAAATACCATTTGACCCAG
chr1	191953133	191953675	193686510	193687052	-	226	542	19	L1HS	"COLO1T,COLO1N"	615	539	"L1HS,MLT2B2,L1MC5"				c1p191953404FS	CTATAAGTTCTGCCTTCTACACCC	c1p191953404ES	TAATGCTAGATGACACGTTAGTGG
chr1	192103388	192103893	193836765	193837270	+	4519	505	36	L1HS	"COLO1T,COLO1N"	17595	505	L1HS				c1p192103640FS	AGAGCAGTAGAAATGTTAGATGGG	c1p192103640ES	TCATTCTCAGTAAACTATCGCAAG
chr1	192492590	192492779	194225967	194226156	-	18	189	4	L1PA2	"COLO1T,COLO1N"	34	189	"MLT2B1,L1PA2"				c1p192492684FS	AGAAGAGATTAGCATTTGAACTGG	c1p192492684ES	TTTTGCTAACGTACCCTTATTTTC
chr1	193201071	193201307	194934448	194934684	-	584	236	8	noL1	"COLO1T,COLO1N"	1218	458		"LINE:Ewing,Stewart"			c1p193201189FS	CAATGCATTCAATTTCATAGACTC	c1p193201189ES	ACAGGTCAAGTAGCTTTTAATTCG
chr1	193849999	193850761	195583376	195584138	-	38	762	3	noL1	"COLO1T,COLO1N"	55	65	L1PA4				c1p193850380FS	ATATCTCCTAATGCTATCCTTCCC	c1p193850380ES	AAACTACCATCAGAGTGAATAGGC
chr1	194160358	194160791	195893735	195894168	-	11528	433	40	L1HS	"COLO1T,COLO1N"	14073	441	"L2a,L1HS,(T)n"				c1p194160574FS	AGAGACATCTTGTTTTCATTTTCC	c1p194160574ES	TCATTCTCAGTAAACTATCGCAAG
chr1	194454304	194455186	196187681	196188563	-	18986	882	55	L1HS	"COLO1T,COLO1N"	42924	680	"L1HS,LTR41,L1MDa"				c1p194454745FS	GATTTGTGCATTATGTATCAGTCG	c1p194454745ES	AAATAGTTTTTAACGCAAAGATGG
chr1	194654800	194654917	196388177	196388294	-	10	117	2	L1PA4	"COLO1T,COLO1N"	15	65	HAL1		"KCNT2,SLICK"		c1p194654858FS	ATTCTCCTCTTACAAGGACATCAG	c1p194654858ES	TATGCAACCATAAAGAATGATGAG
chr1	194739589	194739840	196472966	196473217	-	34	251	4	L1PA3	"COLO1T,COLO1N"	129	166	L1PA3		"KCNT2,SLICK"		c1p194739714FS	ATGCTCTGACAGTCTAGGATTACC	c1p194739714ES	AGGAAGAGTTCATGTCCTTTGTAG
chr1	196709180	196709463	198442557	198442840	+	12	283	5	L1PA7	"COLO1T,COLO1N"	3	655	L1MA3				c1p196709321FS	TTCTCAGCAAACTATCACAAGAAC	c1p196709321ES	GCCTACAAGATGTAGAAAATAGCC
chr1	197261284	197262022	198994661	198995399	+	2479	738	10	L1HS	"COLO1T,COLO1N"	11331	491	"L1MEe,L1HS"				c1p197261653FS	TTTCTAGGTTTTCATCTTCCTTTG	c1p197261653ES	AATGCTAGATGACAAGTTAGTGGG
chr1	197706780	197707337	199440157	199440714	+	841	557	21	L1HS	"COLO1T,COLO1N"	3906	556	"L1HS,L2b,(A)n,MLT1A1"	LINE:dbRIP			c1p197707058FS	GAATACTGTAGGCAATTGGAACAC	c1p197707058ES	TAATGCTAGATGACACGTTAGTGG
chr1	197942928	197943185	199676305	199676562	+	58	257	4	L1PA2	"COLO1T,COLO1N"	285	304	"L1PA2,MER5B"				c1p197943056FS	ACTTGTTTCCTTAGCAACTTTGAG	c1p197943056ES	TAAATCATCATTAAAATATGCCCC
chr1	199936755	199937194	201670132	201670571	+	13	439	3	L1PA6	"COLO1T,COLO1N"	21	434	"AluY,L1PA6"		NAV1		c1p199936974FS	TGGTATCTCACTGTAGGTGTCATC	c1p199936974ES	GAAACCCCGTCTCTAATAAAAATAC
chr1	200496583	200496845	202229960	202230222	-	32	262	3	L1PA3	"COLO1T,COLO1N"	191	453	"L1M6,(TTA)n"		"LGR6,VTS20631"		c1p200496714FS	TTTTAGTAGAGAAAGGGTTTCACC	c1p200496714ES	ATGATGAGTTCATGTCCTTTGTAG
chr1	200762845	200763180	202496222	202496557	+	524	335	7	noL1	"COLO1T,COLO1N"	372	298	L1MEe		PPP1R12B		c1p200763012FS	AATTACTCTAGGCTTGGTGTTTTG	c1p200763012ES	TTTGTAATGGCAACAAAAAGTTAG
chr1	205959194	205959575	207892571	207892952	+	258	381	13	L1PA2	"COLO1T,COLO1N"	1205	548	"AluJb,L1PA2"		CR1L		c1p205959384FS	AACCCTCTGTGTCTCAGTTTCTAC	c1p205959384ES	ATGAAATTGGAAAACATCATTCTC
chr1	208153342	208153803	210086719	210087180	-	326	461	16	L1HS	"COLO1T,COLO1N"	2160	798	"HAL1,L1HS"				c1p208153572FS	ACTATGAGACTTCCCAGTTTATGC	c1p208153572ES	TCATTCTCAGTAAACTATCGCAAG
chr1	208681422	208681755	210614799	210615132	-	42	333	3	L1PA2	"COLO1T,COLO1N"	38	333	(TA)n		HHAT		c1p208681588FS	GTAAGGAATGAGGAACAGGAGAG	c1p208681588ES	AACACTGCATATTCTCACTCGTAG
chr1	215599799	215600137	217533176	217533514	+	14	338	3	noL1	"COLO1T,COLO1N"	21	66	"(TAA)n,L1PA3"				c1p215599968FS	CAAAAATGATAATGTCTGGTGAAG	c1p215599968ES	CAAATCATGCTGCTATAAAGACAC
chr1	215615282	215615494	217548659	217548871	-	984	212	6	noL1	"COLO1T,COLO1N"	3419	602	"MER115,MER5A"	"LINE:Ewing,Iskow,Stewart"			c1p215615388FS	GAAAATTGTACCACTGATGTATGC	c1p215615388ES	CTCGGAAAGCATAAGAACTAAATC
chr1	215930259	215930497	217863636	217863874	-	10	238	4	L1PA2	"COLO1T,COLO1N"	45	256	"L1MEd,L1PA2"		SPATA17		c1p215930378FS	TTTTAGTAGAGACAGGGTTTCACC	c1p215930378ES	TAGACTGGATTAAGAAAATGTGGC
chr1	216248813	216249254	218182190	218182631	-	3389	441	36	L1HS	"COLO1T,COLO1N"	16860	463	"MER4-int,L1HS,LTR14B"	"LINE:dbRIP,Alu:Iskow"			c1p216249033FS	GAGAGCAGGTTCTTTTAACTCAAG	c1p216249033ES	GATGAGTTCATATCCTTTGTAGGG
chr1	216313078	216313526	218246455	218246903	+	4314	448	32	L1HS	"COLO1T,COLO1N"	7665	496	"L1HS,MER45B"	LINE:dbRIP			c1p216313302FS	TCAGAGATCAGCTTCAGTTCATAG	c1p216313302ES	TCATTCTCAGTAAACTATCGCAAG
chr1	217969029	217969245	219902406	219902622	-	15	216	2	noL1	"COLO1T,COLO1N"	19	71	L1PA6		ZNT8		c1p217969137FS	AGTTTGAAGTCAGGTAGTGTGATG	c1p217969137ES	TGACAAAAACCACATGATTATCTC
chr1	219121678	219121779	221055055	221055156	+	16	101	7	noL1	"COLO1T,COLO1N"	34	94	(CA)n		HLX		c1p219121728FS	CAGAGGGAAGAAAGACAAGAGG	c1p219121728ES	AGAAATTCAGTTCAGCATCAGTTC
chr1	219235114	219235424	221168491	221168801	-	18	310	5	L1HS	"COLO1T,COLO1N"	74	419	"L1HS,L1MC1,L1ME1"				c1p219235269FS	AAATAGGAGCCTCAGAAATAATCC	c1p219235269ES	AGTTTGAAGTCAGGTAGTGTGATG
chr1	219894143	219894437	221827520	221827814	-	1127	294	9	noL1	"COLO1T,COLO1N"	2195	290	"AluY,L1ME2"	"LINE:dbRIP,Ewing"			c1p219894290FS	CAGAGAGACACATCTCACTTATGG	c1p219894290ES	TTTAGAGGGGACTAACATTCAAAC
chr1	220971745	220972172	222905122	222905549	-	83	427	4	L1PA3	"COLO1T,COLO1N"	631	428			"AK094916,C1orf58"		c1p220971958FS	CAAGGATGACAGTGTATGAGATTG	c1p220971958ES	GAGATGAAAACCTAGTTTGGTAGG
chr1	221413634	221413800	223347011	223347177	+	236	166	4	L1PA3	"COLO1T,COLO1N"	2095	478	L1ME4a				c1p221413717FS	TTCAAAGCAAGAAGGAAGATAAAG	c1p221413717ES	TCATTCTCAGTAAACTATCGCAAG
chr1	221439464	221439937	223372841	223373314	-	11	473	4	L1PA2	"COLO1T,COLO1N"	26	667	"(TTC)n,AluSc8,L1PA2,CT-rich"				c1p221439700FS	CTTCTCCTTCTTCTCCTTCTTCTC	c1p221439700ES	AATGTTAAATGACGAGTTAATGGG
chr1	221557377	221557873	223490754	223491250	-	2938	496	33	L1HS	"COLO1T,COLO1N"	9280	497	"L1HS,AT_rich,MER41A"		SUSD4		c1p221557625FS	ATAAAACAGGTGGCAGTAAAGAAG	c1p221557625ES	TCATTCTCAGTAAACTATCGCAAG
chr1	222122201	222122787	224055578	224056164	-	14	586	5	L1PA8	"COLO1T,COLO1N"	19	98	"L1PA8,AluSg"				c1p222122494FS	TGAAGGGTTTTTCATGTCTCTATC	c1p222122494ES	AGAATAAACATTCTTCTCAGTGCC
chr1	222313690	222314200	224247067	224247577	+	30	510	12	noL1	"COLO1T,COLO1N"	94	508	"MLT1D,(A)n"				c1p222313945FS	AAGGTTCTCTGATGAAAAGAACAG	c1p222313945ES	AGCGAAATACAAATCCAATAAAAG
chr1	223231777	223232199	225165154	225165576	+	41	422	12	L1PA3	"COLO1T,COLO1N"	254	383	"L1PA3,L1MA5"		DNAH14		c1p223231988FS	GTACTGTTTTTCCATATGGTTGTG	c1p223231988ES	TCATTCTCAGTAGACTATCGCAAG
chr1	223240204	223240663	225173581	225174040	+	14	459	7	noL1	"COLO1T,COLO1N"	17	489	L1M1		DNAH14		c1p223240433FS	ATGATCATATGGTTTTTGTCCTTC	c1p223240433ES	GAAAAATAGCTGTATTGAGGAAGC
chr1	226124451	226125163	228057828	228058540	-	409908	712	77	L1HS	"COLO1T,COLO1N"	713002	717	"MSTD,L1ME3B,L1HS,LTR16A1"				c1p226124807FS	AGCTGTCCTCAGAAGTGTCAG	c1p226124807ES	TGGGAGATATACCTAATGCTAGATG
chr1	229982565	229982702	231915942	231916079	+	23	137	3	L1PA2	"COLO1T,COLO1N"	102	138	"L1PA2,MER49"		"DISC1,KIAA0457"		c1p229982633FS	AATAAACATACGTGTGCATGTGTC	c1p229982633ES	TGTAAATTCCTGTCTTACCTGTCC
chr1	230375728	230375836	232309105	232309213	-	453	108	5	noL1	"COLO1T,COLO1N"	1183	79	AluJr				c1p230375782FS	AATGCTGGATTTAGTATATGTGGC	c1p230375782ES	ATCACTAAAAATTACTGGGTGAGG
chr1	232240130	232240340	234173507	234173717	-	198	210	4	L1PA3	"COLO1T,COLO1N"	107	237	"L2a,L1PA3"		SLC35F3		c1p232240235FS	ATTTTAACATGAGATTTGGAGAGG	c1p232240235ES	TCATTCTCAGTAAACTATCGCAAG
chr1	233333347	233333730	235266724	235267107	-	75	383	2	L1PA5	"COLO1T,COLO1N"	221	67	"AluSx4,L1PA5,MIRb"				c1p233333538FS	TTGTAGCTCATTTCTGTTTAGCTG	c1p233333538ES	AATTCCAGGTTAATCTTCAGAGTG
chr1	233601298	233601904	235534675	235535281	-	30	606	3	noL1	"COLO1T,COLO1N"	26	71	"AluSq2,AluSx"		TBCE		c1p233601601FS	TTTTTAGTAGAGATGGGGTTTCTC	c1p233601601ES	AAATATAAAAATCAGCTGGGTGTG
chr1	235248915	235249422	237182292	237182799	-	1425	507	17	L1HS	"COLO1T,COLO1N"	2454	389	"L1HS,L1MEc"				c1p235249168FS	TTTGAAGATTTTAGGGATTTTCTG	c1p235249168ES	ACACCGCATATTCTCACTCATAG
chr1	235311167	235311677	237244544	237245054	+	375	510	12	L1HS	"COLO1T,COLO1N"	1335	511	"(TA)n,L1HS,(TC)n"	LINE:Iskow	RYR2		c1p235311422FS	CCCCATTAAGAAATCACAGTTATC	c1p235311422ES	TCATTCTCAGTAAACTATCGCAAG
chr1	236918590	236919279	238851967	238852656	-	29962	689	44	L1HS	"COLO1T,COLO1N"	59540	690	"T-rich,L1HS"	LINE:dbRIP			c1p236918934FS	AAGTCACAGAACTCTGGAGAAGAG	c1p236918934ES	TATCTCATAGTGGTTTTGATTTGC
chr1	237210995	237211173	239144372	239144550	-	232	178	4	noL1	COLO1T	0	0					c1p237211084FS	TTAATCAATGCAGTTTAAATGTGG	c1p237211084ES	AGCTGATACCTCTAATTGTGGAAC
chr1	237852872	237853470	239786249	239786847	-	15266	598	16	L1HS	"COLO1T,COLO1N"	47602	556	"Tigger1,L1HS,L1PA5"		CHRM3		c1p237853171FS	AAAGTTCTACTGTGGACAAAATGC	c1p237853171ES	TGGGAGATATACCTAATGCTAGATG
chr1	239125047	239125224	241058424	241058601	-	42	177	3	L1PA5	"COLO1T,COLO1N"	233	186	"L1PA5,MSTA"		RGS7		c1p239125135FS	CTAGCTCACCTTCAGAAGAATAGG	c1p239125135ES	TAGACTGGATTAAGAAAATGTGGC
chr1	239202598	239202982	241135975	241136359	+	301	384	13	L1PA2	"COLO1T,COLO1N"	875	326	"AluJb,L1PA2"		RGS7		c1p239202790FS	TTTTAGTAGAGACAGGGTTTCACC	c1p239202790ES	TCATTCTCAGTAAACTATCGCAAG
chr1	240179030	240179779	242112407	242113156	-	14	749	5	noL1	"COLO1T,COLO1N"	26	742	"AluJr,L1PA8A,AluSp"				c1p240179404FS	GTCATGGTAACTCTAACAAGCCC	c1p240179404ES	CTTGATATCAGCAGATGGTACTTG
chr1	240378249	240378375	242311626	242311752	+	72	126	2	noL1	"COLO1T,COLO1N"	260	200	L1ME1	LINE:Ewing	PLD5		c1p240378312FS	TCTATAGACAAAAATCAATGTTCCC	c1p240378312ES	TTTGGCTTTTATTTTCATTTTCTC
chr1	240562477	240563373	242495854	242496750	+	1484	896	14	noL1	"COLO1T,COLO1N"	6021	923	L1PA7	LINE:Ewing	PLD5		c1p240562925FS	CCTTTAAGATGTAAATCCTTGCAC	c1p240562925ES	ACAGTGTAAAAGCGTTCCTATTTC
chr1	246451697	246452095	248385074	248385472	+	39	398	6	L1PA2	"COLO1T,COLO1N"	69	420	"LTR41B,L1PA2"				c1p246451896FS	CTCAGTATAGGGCACTTATGGTTC	c1p246451896ES	TCATTCTCAGTAAACTATCGCAAG
chr10	485808	485944	495808	495944	+	187	136	11	L1HS	"COLO1T,COLO1N"	230	150	Tigger3c		"KIAA0934,DIP2C"		c10p485876FS	CAGTTGAGCCATTGTAATTGATAC	c10p485876ES	AGAAAAGTGGTATGTGGCTTACTC
chr10	1340251	1340429	1350251	1350429	+	18	178	2	L1PA2	"COLO1T,COLO1N"	11	313	"L1MC1,L1PA2"		ADARB2		c10p1340340FS	CAATCACACTCCTTGGTCTTTAC	c10p1340340ES	TAGACTGGATTAAGAAAATGTGGC
chr10	3667375	3668081	3677375	3678081	-	10	706	6	noL1	"COLO1T,COLO1N"	51	73			BC037918		c10p3667728FS	GTTGATATTTTAGGTGGTGGAAAC	c10p3667728ES	AGTTAACAAACAAGTTAGTGCGTG
chr10	5283290	5283720	5293290	5293720	+	17689	430	22	L1HS	"COLO1T,COLO1N"	40467	546	"L1HS,LTR10E"				c10p5283505FS	TTCAGACAAAAAGTTCTCTCAGTG	c10p5283505ES	GATGAGTTCATATCCTTTGTAGGG
chr10	6386960	6387367	6346954	6347361	-	79	407	4	noL1	"COLO1T,COLO1N"	81	728	"AluJo,AT_rich,FLAM_C"				c10p6387163FS	CAGTCATGAGCCACTATCTCTTAC	c10p6387163ES	TTTAAACACGAAAGAAAGAAAAGC
chr10	6451091	6451649	6411085	6411643	-	21571	558	41	L1HS	"COLO1T,COLO1N"	99921	695	L1HS	LINE:dbRIP			c10p6451370FS	TCTATTTCTTGATACCAGCAGATG	c10p6451370ES	ACACCGCATATTCTCACTCATAG
chr10	9914187	9914674	9874181	9874668	+	665	487	9	L1PA3	"COLO1T,COLO1N"	792	487	"L2a,L1PA3"				c10p9914430FS	ACGTAGGTACCTTATGTTTTCCTG	c10p9914430ES	CGTATGTTTATTGTGGCACTATTC
chr10	10648098	10648431	10608092	10608425	-	653	333	7	L1PA2	"COLO1T,COLO1N"	1018	163	"L2c,L1PA2"				c10p10648264FS	AGGCTCAGTCCTTAATGATGTATG	c10p10648264ES	GTTTCATCTTCTTTTTCTCAAAGC
chr10	13300683	13300976	13260677	13260970	+	25	293	6	L1HS	"COLO1T,COLO1N"	115	342	"L1HS,(A)n"	LINE:dbRIP			c10p13300829FS	GTTTTTCATAATTTAAAAGGCTGG	c10p13300829ES	TCATTCTCAGTAAACTATCGCAAG
chr10	15997556	15997794	15957550	15957788	-	14	238	7	L1PA2	"COLO1T,COLO1N"	23	329	"L1MD3,L1PA2"				c10p15997675FS	GGTCCATTAAACCTCTTTCTTTTG	c10p15997675ES	TCATTCTCAGTAAACTATCGCAAG
chr10	19105485	19105768	19065479	19065762	-	45	283	2	noL1	"COLO1T,COLO1N"	367	283	L1ME4a	LINE:Ewing			c10p19105626FS	GTGATTTAAGTTGCAAGTTTTGTG	c10p19105626ES	TAGTGTAACAACAGTCTGACCACC
chr10	19256723	19256950	19216717	19216944	+	68	227	2	noL1	"COLO1T,COLO1N"	937	291	L2c	"LINE:dbRIP,Ewing,Iskow,Stewart"			c10p19256836FS	TGAAATGTAGAAAACACTGAATGG	c10p19256836ES	GATTTTGAAAAGACGCAAGAATAG
chr10	19417026	19417550	19377020	19377544	-	33676	524	53	L1HS	"COLO1T,COLO1N"	110103	535	"MER81,L1HS,AT_rich,(T)n"				c10p19417288FS	CAAGTTTAAGAAGCAGAGTTTTCC	c10p19417288ES	TAATGCTAGATGACACGTTAGTGG
chr10	19490399	19490859	19450393	19450853	+	4316	460	32	L1HS	"COLO1T,COLO1N"	9431	475	"AluSc8,L1HS,MER3,(A)n"				c10p19490629FS	TACAAAATCGTGAAAATAGTGTGG	c10p19490629ES	TCATTCTCAGTAAACTATCGCAAG
chr10	20869396	20869774	20829390	20829768	+	50	378	3	L1PA2	"COLO1T,COLO1N"	366	379	"Charlie19a,L1PA2"				c10p20869585FS	GTCCTTATTTCTTATTTTCCTGCC	c10p20869585ES	TGGAAATCATCATTCTCAGTAAAC
chr10	21080482	21080648	21040476	21040642	-	10	166	4	L1PA2	"COLO1T,COLO1N"	112	460	"L1MA8,L1PA2,(TTTA)n"				c10p21080565FS	ACACACCATAGTCCCATCTACTG	c10p21080565ES	TCATTCTCAGTAAACTATCGCAAG
chr10	22171188	22171428	22131182	22131422	+	29	240	6	L1PA4	"COLO1T,COLO1N"	33	291	"L2,L1PA4"		DNAJC1		c10p22171308FS	TATCCCTTATCAGAACATTCATTG	c10p22171308ES	ATGATGAGTTCATGTCCTTTGTAG
chr10	23881828	23882036	23841822	23842030	-	211	208	4	noL1	"COLO1T,COLO1N"	161	174	L1ME4a	"LINE:Ewing,Iskow,Stewart"			c10p23881932FS	TAATACACCGGCTATTCTCTTACC	c10p23881932ES	TGAATCATTTGTAATACTTGTGGG
chr10	24153524	24153630	24113518	24113624	+	25	106	6	noL1	"COLO1T,COLO1N"	20	73	"(TA)n,AluSq"		KIAA1217		c10p24153577FS	GAGACAAATAGAAACAAAAGGTGC	c10p24153577ES	TAAATAAAAAGAGGAGGGACATTG
chr10	25747356	25747646	25707350	25707640	-	2989	290	17	noL1	"COLO1T,COLO1N"	7655	309	AT_rich	"LINE:Ewing,Iskow,Stewart"	GPR158		c10p25747501FS	CAGGAAGCAAATATGTGTAGGG	c10p25747501ES	AGCAATAGAGGAGAAAATACCAAC
chr10	26317267	26317945	26277261	26277939	+	12	678	4	noL1	"COLO1T,COLO1N"	29	680	"L1PB1,AT_rich,L1ME1,AluJr"		MYO3A		c10p26317606FS	TTATAAAAATTAGCCAGGCATAGTG	c10p26317606ES	TAAGAATGATACACTGGACATTGG
chr10	27815740	27815898	27775734	27775892	+	71	158	4	noL1	"COLO1T,COLO1N"	205	157	MIRb	"LINE:Iskow,Stewart"			c10p27815819FS	TAGTTAGGATTACAGATGTGTGCC	c10p27815819ES	ATCCTTAAGTTGTTAGAAACTGGC
chr10	28370586	28370785	28330580	28330779	+	15	199	3	L1PA4	"COLO1T,COLO1N"	48	239	L2				c10p28370685FS	ATACCGTGACTTAAGCTTTGTGAG	c10p28370685ES	TACACTATGGAATACTATGCAGCC
chr10	29751583	29752254	29711577	29712248	-	3295	671	28	L1HS	"COLO1T,COLO1N"	6568	535	"L1HS,(T)n"	LINE:dbRIP	LOC387647		c10p29751918FS	GAATTAAGAGGGTAAAGTGCATTG	c10p29751918ES	TAATGCTAGATGACACGTTAGTGG
chr10	31282320	31282601	31242314	31242595	+	23	281	4	L1PA2	"COLO1T,COLO1N"	72	294	"L1PA2,L1M5"		ZNF438		c10p31282460FS	TTTCAGTAGAGAAGGGATTACACC	c10p31282460ES	ATCATCATTCTCAGTAAACTGTCG
chr10	31804189	31804468	31764183	31764462	+	41	279	3	L1PA3	"COLO1T,COLO1N"	175	326	L1PB4		ZEB1		c10p31804328FS	GTGATGAATTCTCTCTATGTGTGC	c10p31804328ES	TCATTCTCAGTAAACTATCGCAAG
chr10	32968812	32969708	32928806	32929702	-	484	896	15	L1HS	"COLO1T,COLO1N"	1767	1051	"AluYc3,L1PA4"		C10orf68		c10p32969260FS	CAATTTCTGTTGTTTTACATTTGC	c10p32969260ES	TAAAGAAAAGAATTTTCAACCCAG
chr10	33839369	33839825	33799363	33799819	-	4362	456	39	L1HS	"COLO1T,COLO1N"	9180	419	"L1HS,AluSx1,(T)n"				c10p33839597FS	AAAGATGTGATTTCTTCTGTTTCC	c10p33839597ES	TCATTCTCAGTAAACTATCGCAAG
chr10	36336871	36337054	36296865	36297048	-	125	183	5	L1PA4	"COLO1T,COLO1N"	1014	426	"AT_rich,L1PA4"				c10p36336962FS	ACGATATTGAAGCACACTCTCAC	c10p36336962ES	AACCCAAATATCCAACAATGATAG
chr10	37241219	37241604	37201213	37201598	+	12	385	5	L1PA2	"COLO1T,COLO1N"	27	413	"L1PA2,L1PA4"				c10p37241411FS	ATGGCTAACTAGAATAACCAGTGC	c10p37241411ES	TCATTCTCAGTAAATTATCGCAAG
chr10	38231921	38232355	38191915	38192349	+	143	434	8	L1PA2	"COLO1T,COLO1N"	1119	443	L1PA2				c10p38232138FS	TGACACATTTCCTTTAACACAATC	c10p38232138ES	ATCATCATTCTCAGTAAACTGTCG
chr10	38591391	38591945	38551385	38551939	-	21224	554	47	L1HS	"COLO1T,COLO1N"	78353	553	"L1MB3,L1MA4,L1HS"				c10p38591668FS	ATGTTAAATAAGCCAGCTACAAGG	c10p38591668ES	AAAAACCAAACACCACATATTCTC
chr10	42609881	42610277	43289875	43290271	-	1094	396	7	L1PA3	"COLO1T,COLO1N"	3201	565	L1PA3		BMS1		c10p42610079FS	ACATTACAAGGGAGTCTTTTCTTG	c10p42610079ES	TGGAAATCATCATTCTCAGTAAAC
chr10	43854745	43854893	44534739	44534887	+	90	148	4	L1PA3	"COLO1T,COLO1N"	249	148	(TAA)n				c10p43854819FS	TCTCTCAGGACAATACAATCACAC	c10p43854819ES	GACTGGATTAAGAAAATATGGCAC
chr10	43958259	43958403	44638253	44638397	+	17	144	3	L1PA4	"COLO1T,COLO1N"	44	386	"AT_rich,L1PA4"				c10p43958331FS	AGTGAACCAAAAAGTTTCATTAGC	c10p43958331ES	TAGCCTAGTTAAAGAAAATGTGGC
chr10	44037235	44037647	44717229	44717641	-	1322	412	16	L1HS	"COLO1T,COLO1N"	12739	544	"L1ME3A,L1HS"				c10p44037441FS	GTGTTGTGTTTGTTTGCTTTTTAG	c10p44037441ES	TCATTCTCAGTAAACTATCGCAAG
chr10	44842354	44842703	45522348	45522697	+	439	349	12	L1PA3	"COLO1T,COLO1N"	2090	364	MER91A		BC026193		c10p44842528FS	ATCCTAATTGGAACATACCATCTG	c10p44842528ES	GAGGGATAGCATTGGGAGATATAC
chr10	45142879	45143110	45822873	45823104	-	15	231	2	noL1	"COLO1T,COLO1N"	21	231	L1PA7				c10p45142994FS	ATATGTGCCAGATTTTCTTTATCC	c10p45142994ES	TATCTGATCTTTGACAAACCTGAC
chr10	45357009	45357183	46037003	46037177	+	11	174	2	L1PA4	COLO1T	0	0	"HAL1,L1PA4"		8-Mar		c10p45357096FS	TTAGAACTATGGTTAGGAGCTTGG	c10p45357096ES	CAAATGTCCAACAATGATAGACTG
chr10	45392182	45392448	46072176	46072442	+	25	266	5	noL1	"COLO1T,COLO1N"	26	266	"AluJo,MLT1A1"		8-Mar		c10p45392315FS	TTGACTGTAGTCATCCTGTTGTTC	c10p45392315ES	TAGATCTGAACCTAAAGCCAAAAC
chr10	53109033	53109534	53439027	53439528	-	17709	501	48	L1HS	"COLO1T,COLO1N"	55167	470	"T-rich,L2c,MER51C,L1HS"		PRKG1		c10p53109283FS	TTCCTCCCTTATTTTTAACTGTTG	c10p53109283ES	TGTAGGTAGAGTAGCCTTTGATCC
chr10	53611023	53611244	53941017	53941238	-	95	221	6	L1HS	"COLO1T,COLO1N"	313	311	"L1HS,MSTB,L1MA5A"		PRKG1		c10p53611133FS	AGCCAATAAGGCTATTTTTCAGAC	c10p53611133ES	CAAATGTCCAACAATGATAGACTG
chr10	53669061	53669404	53999055	53999398	+	124	343	12	L1PA2	"COLO1T,COLO1N"	823	304	"(TAAAAA)n,L1PA2,(A)n,AT_rich"		"CR603327,PRKG1"		c10p53669232FS	AATATTAGAAACTGGTGCCTTTCC	c10p53669232ES	TCATTCTCAGTAAACTATCGCAAG
chr10	53720672	53721067	54050666	54051061	-	37	395	5	L1PA3	"COLO1T,COLO1N"	39	394	"L1PA3,AT_rich,AluSz"		"CR603327,PRKG1"		c10p53720869FS	CTTACAGTGAGCTGTGATTGTACC	c10p53720869ES	CATAAAAATGATGAGTTCATGTCC
chr10	53833470	53833904	54163464	54163898	-	141	434	9	L1PA3	"COLO1T,COLO1N"	672	596	"L1PA3,L1PA15"				c10p53833687FS	TGGATAGATAGTTTTTCGGTTCTC	c10p53833687ES	TCATTCTCAGTAAACTATCGCAAG
chr10	55883399	55883525	56213393	56213519	+	26	126	7	L1PA4	"COLO1T,COLO1N"	38	196	"MLT1C,L1PA4"		PCDH15		c10p55883462FS	TCAGACCTATTGGAAAGAAGAGTC	c10p55883462ES	ACATGCACATGTATGTTTATCACG
chr10	56731285	56731519	57061279	57061513	-	508	234	4	noL1	COLO1T	0	0	L1MD1		PCDH15		c10p56731402FS	TGTATGTTTAATTTGGCAACAAAC	c10p56731402ES	TAACATGTATATGGAAAGGCAATG
chr10	57037615	57038065	57367609	57368059	+	1860	450	42	L1PA3	"COLO1T,COLO1N"	13193	449	"G-rich,L1PA3,(GA)n,(GGAA)n"		PCDH15		c10p57037840FS	GAGATGAGACTCTTTCTTGAGTCC	c10p57037840ES	TTGATGAGTTCATGTCCTTTGTAG
chr10	57877241	57877605	58207235	58207599	-	20	364	3	noL1	"COLO1T,COLO1N"	20	363	L1PA3	LINE:Ewing			c10p57877423FS	TTTTAGAGTTTCCAGTTTTTCTGC	c10p57877423ES	TAGTCAAAGAAAGGGATGACAGAC
chr10	58435706	58435991	58765700	58765985	+	35	285	7	L1PA3	"COLO1T,COLO1N"	101	300	"L1MB8,L1PA3"				c10p58435848FS	CAGGGTTTCAACCACTAATTTATC	c10p58435848ES	TCATTCTCAGTAAACTATCGCAAG
chr10	58533068	58533615	58863062	58863609	-	2094	547	13	L1HS	"COLO1T,COLO1N"	12118	869	"PRIMA4-int,L1HS,MER4C"				c10p58533341FS	CCAGAGAATAGAGCCTATGTTGAC	c10p58533341ES	TTCTCAGTAAACTATCGCAAGAAC
chr10	59178923	59179179	59508917	59509173	+	5146	256	8	noL1	"COLO1T,COLO1N"	21660	386	L1PA10	"LINE:dbRIP,Ewing"			c10p59179051FS	CCATTTTAAAAGTCATATGGAACC	c10p59179051ES	AATGGTCGAACTAATTTACATTCC
chr10	62484820	62485010	62814814	62815004	-	34	190	4	L1PA2	"COLO1T,COLO1N"	153	75	"L2a,T-rich,L1PA2"				c10p62484915FS	GCTCTGAGCTTTAATTTCTTCATC	c10p62484915ES	TTACAATAGCAAAGACTTGGAACC
chr10	64060487	64061041	64390481	64391035	+	42	554	5	L1PA3	"COLO1T,COLO1N"	44	186	AluY		ZNF365		c10p64060764FS	TTTCATGTATTGGTCCTGTTTATC	c10p64060764ES	CATATGTAACTAACCTGCACATTG
chr10	66000293	66000512	66330287	66330506	-	789	219	5	noL1	"COLO1T,COLO1N"	818	82	THE1B	LINE:Ewing			c10p66000402FS	CAGTAGACAATTACAGATGGAAGC	c10p66000402ES	CACAGATTACTATCACCATTTTGC
chr10	66522195	66522627	66852189	66852621	+	49	432	3	L1PA4	"COLO1T,COLO1N"	154	432	"AluYa5,L1PA4"	Alu:dbRIP			c10p66522411FS	GGATTTCTTAAGTTTACTTCTTCGC	c10p66522411ES	GTAATCCCAGCACTTTGGGAG
chr10	67085788	67086247	67415782	67416241	+	145	459	18	L1PA15	"COLO1T,COLO1N"	2500	440	"L1PA15,L1PA4"				c10p67086017FS	TGTTTTTGTTGCAAAGACTTTTAG	c10p67086017ES	TTCTCAGCAAACTATCACAAGAAC
chr10	68735093	68735398	69065087	69065392	+	120	305	19	L1HS	"COLO1T,COLO1N"	381	305	"(TAAA)n,L1HS,L2"		CTNNA3		c10p68735245FS	CCATAGACCAATATCTCCTCAAAC	c10p68735245ES	GAAACCCCGTCTCTACTAAAAATAC
chr10	68872228	68872342	69202222	69202336	-	17	114	5	L1PA3	"COLO1T,COLO1N"	237	162	L1M1		CTNNA3		c10p68872285FS	AGACCTAAGAGAAACAACCAAATG	c10p68872285ES	AATGCTAAATGACAAGTTAATGGG
chr10	72464902	72465363	72794896	72795357	+	682	461	23	L1PA3	"COLO1T,COLO1N"	1988	511	"L1PA3,L3,MIR3"				c10p72465132FS	ACTAAGTGTCAAAGACTTGGGTTC	c10p72465132ES	TCATTCTCAGTAAACTATCGCAAG
chr10	78021462	78021872	78351456	78351866	+	69019	410	34	L1HS	"COLO1T,COLO1N"	171913	411	"L1PBa,L1HS"				c10p78021667FS	AAAAACCACTTGTACCTCTACAGC	c10p78021667ES	TCATTCTCAGTAAACTATCGCAAG
chr10	78261739	78262315	78591733	78592309	-	1601	576	10	L1HS	"COLO1T,COLO1N"	10868	682	"L1HS,AT_rich"				c10p78262027FS	TAAGCTCCTCAATTGGCTATTATG	c10p78262027ES	TAATGCTAGATGACACGTTAGTGG
chr10	81714860	81715350	81724880	81725370	-	62433	490	73	L1HS	"COLO1T,COLO1N"	293828	799	"L1HS,AT_rich,HERVH-int"				c10p81715105FS	ACCAGCCTTTATTAGTCAAATCAC	c10p81715105ES	TTCTCAGTAAACTATCGCAAGAAC
chr10	82167478	82167819	82177498	82177839	-	31	341	6	L1PA17	"COLO1T,COLO1N"	35	342	"AluJo,L1PA17"		C10orf58		c10p82167648FS	GTCTTATTTACAGGAGAAGCAAGG	c10p82167648ES	TCCTAAGTGAACTAACCCAGAAAC
chr10	82438511	82438634	82448531	82448654	-	600	123	21	L1PA4	"COLO1T,COLO1N"	3065	125	"(T)n,L1PA4"				c10p82438572FS	AATGTTAGGTGCATTTATGATGTG	c10p82438572ES	CAAGTTACTGGAGCTAAAGCAGTC
chr10	82472064	82472280	82482084	82482300	-	17	216	4	L1PA2	"COLO1T,COLO1N"	58	211	L1PA2				c10p82472172FS	TTTTACTGGTCAAAGCAGTTACAG	c10p82472172ES	TCATTCTCAGTAAACTATCGCAAG
chr10	83166037	83166380	83176057	83176400	-	120	343	4	L1PA3	"COLO1T,COLO1N"	744	350	"L1PA3,MIR3"				c10p83166208FS	CAATTGTGTCTGCTAGTAACCATC	c10p83166208ES	GATGAGTTTATGTCCTTTGTAGGG
chr10	83606189	83606561	83616209	83616581	-	333334	372	70	L1HS	"COLO1T,COLO1N"	607264	468	"(TA)n,L1HS,L1MB7"				c10p83606375FS	TGTCTGTTTCTCTTTTCAATTCTG	c10p83606375ES	TCATTCTCAGTAAACTATCGCAAG
chr10	85466381	85466778	85476401	85476798	-	41	397	4	L1PA4	"COLO1T,COLO1N"	103	397					c10p85466579FS	TTATTGGTAGAAACTGGGTAAAGG	c10p85466579ES	AACACTGCATGTTCTCATTCATAG
chr10	85468381	85468875	85478401	85478895	+	29601	494	45	L1HS	"COLO1T,COLO1N"	90939	504	"L1MC,L1HS,AT_rich,AluJb"				c10p85468628FS	CTGTAGTCCTAGCTACTCAGGAGG	c10p85468628ES	TCATTCTCAGTAAACTATCGCAAG
chr10	87111322	87111720	87121342	87121740	+	283	398	4	L1HS	"COLO1T,COLO1N"	1496	518	"L1M2,(A)n,AluSc"				c10p87111521FS	TAAAGAAGGTTGCTTAGCTTTCTC	c10p87111521ES	TGGGAGATATACCTAATGCTAGATG
chr10	87495416	87495792	87505436	87505812	+	417	376	19	L1PA2	"COLO1T,COLO1N"	3624	489	"MLT1H1-int,L1PA2"		"GRID1,KIAA1220"		c10p87495604FS	TGACCCAAAGTCTAGGATCTTATC	c10p87495604ES	TCATTCTCAGTAAACTATCGCAAG
chr10	91707201	91707645	91717221	91717665	-	2024	444	11	noL1	"COLO1T,COLO1N"	5560	437	"MamRep605,MER58A"	"LINE:Beck,Ewing,Iskow,Stewart"			c10p91707423FS	ACCAGAGATGTTTCAGACTTTTTC	c10p91707423ES	GGAGAAATAATCAGATTGAACACC
chr10	93585010	93585404	93595030	93595424	-	19	394	6	noL1	"COLO1T,COLO1N"	72	394	"AluSq2,AluSx3,L1M5"		TNKS2		c10p93585207FS	AAAGTCTCATCAGTGTAGCTCTCC	c10p93585207ES	AAGACATGAACAAGAAATTCACAC
chr10	96574586	96574686	96584596	96584696	-	301	100	4	noL1	"COLO1T,COLO1N"	1308	422	L1PA2		CYP2C19		c10p96574636FS	TGAATGTATTTTCAGAAGAAGCTG	c10p96574636ES	ATTAAAAAGTCAGGAAACAACAGG
chr10	97699367	97699907	97709377	97709917	+	6825	540	27	L1HS	"COLO1T,COLO1N"	23036	541	L1HS		"AK096469,AK091396"		c10p97699637FS	GGATATATTTAAAGCTTTCTCCCC	c10p97699637ES	ACACCGCATATTCTCACTCATAG
chr10	99969820	99970197	99979830	99980207	-	871	377	17	L1PA2	"COLO1T,COLO1N"	1689	377	"L1M2,L1PA2"		"C10orf28,GIDRP88"		c10p99970008FS	AATTCTTGGTCTTTGACTTTTGAC	c10p99970008ES	TCATTCTCAGTAAACTATCGCAAG
chr10	100294444	100294660	100304454	100304670	+	26198	216	19	L1PA3	"COLO1T,COLO1N"	102943	220	"L1PA3,AluY"		HPSE2		c10p100294552FS	TATTGATTATTGCCACAATTTCAG	c10p100294552ES	AAATTTATAGCACTAAATGCCCAC
chr10	100532545	100532729	100542555	100542739	-	158	184	13	L1HS	"COLO1T,COLO1N"	616	99	"L1HS,AT_rich,FordPrefect"		HPSE2		c10p100532637FS	ATATGGTAAAAATAGCAATTCCCC	c10p100532637ES	TCATTCTCAGTAAACTATCGCAAG
chr10	100710342	100710544	100720352	100720554	-	2154	202	36	L1HS	"COLO1T,COLO1N"	9441	403	"L1HS,(T)n"		HPSE2		c10p100710443FS	TTTGTTAAGAAGCATGTCTCACTG	c10p100710443ES	GATGAGTTCATATCCTTTGTAGGG
chr10	101093960	101094392	101103970	101104402	-	47	432	9	noL1	"COLO1T,COLO1N"	16	323	AluSx1		CNNM1		c10p101094176FS	CTTTTAAGAAGATGGAAGATAGGC	c10p101094176ES	TAGTGATTAGCAAGGGAGGAGAAC
chr10	101523326	101523863	101533336	101533873	+	1702	537	20	L1HS	"COLO1T,COLO1N"	3068	538	"L1HS,AluJo,(TAAAA)n"				c10p101523594FS	GGTTAATTGCAGAAGAGCTAGAAG	c10p101523594ES	ACACCGCATATTCTCACTCATAG
chr10	103124484	103124720	103134494	103134730	+	11	236	7	L1PA2	"COLO1T,COLO1N"	55	239	L1PA2		"FBW1A,BTRC"		c10p103124602FS	CACACACTTTTAAACAACCAGAAC	c10p103124602ES	TAGACTGGATTAAGAAAATGTGGC
chr10	106277849	106278002	106287859	106288012	-	20	153	3	L1PA3	"COLO1T,COLO1N"	34	426	MLT1J				c10p106277925FS	ATGCTGTTTATTCTCCACTTATCC	c10p106277925ES	GATAAGTTCATGTCCTTTGTAGGG
chr10	107126588	107127149	107136598	107137159	-	119597	561	66	L1HS	"COLO1T,COLO1N"	263461	668	"HAL1,L1HS"				c10p107126868FS	TAGTGTTCCCTAGAATGAAACCTC	c10p107126868ES	TGGGAGATATACCTAATGCTAGATG
chr10	107255088	107255447	107265098	107265457	-	538	359	4	noL1	"COLO1T,COLO1N"	2886	361	Charlie17a				c10p107255267FS	GAAACCTCTCTCTTTGTTGAGAAC	c10p107255267ES	ATCCCTGTAAGATGTACAGGACAG
chr10	107305966	107306147	107315976	107316157	+	66	181	7	L1PA3	"COLO1T,COLO1N"	439	386	"L1PA3,AT_rich,MLT1B"				c10p107306056FS	ATAAGGCTCTTATCACTCCAGATG	c10p107306056ES	ATCATGTGTTCATGTCCTTTGTAG
chr10	107524938	107525310	107534948	107535320	-	569	372	5	L1HS	"COLO1T,COLO1N"	2681	450	"L1HS,MIRc"				c10p107525124FS	ATTCTATAGAGCAAATGGTTCTGG	c10p107525124ES	GATGAGTTCATATCCTTTGTAGGG
chr10	109217486	109217777	109227496	109227787	+	27	291	4	L1PA2	"COLO1T,COLO1N"	444	68	L1PA2				c10p109217631FS	CAGTTGTTCTGCAAGTTTTGTAAG	c10p109217631ES	GTGGGACTGTAAACTAATTCAACC
chr10	109255783	109256285	109265793	109266295	+	5692	502	25	L1HS	"COLO1T,COLO1N"	18489	597	"L1HS,LTR16E1"				c10p109256034FS	ACATAAGAGCTGGTGAATAGAAGG	c10p109256034ES	TCATTCTCAGTAAACTATCGCAAG
chr10	110443452	110444037	110453462	110454047	+	37497	585	35	noL1	"COLO1T,COLO1N"	81432	585	"L1M4c,L1P2"	"LINE:Ewing,Iskow"			c10p110443744FS	ACCACTGATCTCTTTAGAGCTGTC	c10p110443744ES	TGCCACATTATTAGTTCAGATGTC
chr10	110836757	110837496	110846767	110847506	+	426	739	25	L1HS	"COLO1T,COLO1N"	6735	666	"C-rich,L1HS,(T)n"				c10p110837126FS	ATAAAATGCTTAATCTGCTGACTC	c10p110837126ES	TGGGAGATATACCTAATGCTAGATG
chr10	111067765	111068284	111077775	111078294	-	634	519	14	L1HS	"COLO1T,COLO1N"	2058	755	"L1HS,MIRb"				c10p111068024FS	ATATCATGTTCCCAAGTTTTTACG	c10p111068024ES	TCATTCTCAGTAAACTATCGCAAG
chr10	111561903	111562231	111571913	111572241	-	2425	328	35	L1HS	"COLO1T,COLO1N"	4757	348	"L1HS,L1ME2,AluSz,(T)n"	LINE:dbRIP			c10p111562067FS	TTATTGTGCTGATAGTTACATGGG	c10p111562067ES	GATGAGTTCATATCCTTTGTAGGG
chr10	112731150	112731620	112741160	112741630	-	489	470	18	L1PA3	"COLO1T,COLO1N"	1473	470	"L1MC,L1PA3,L1MCa"		SHOC2		c10p112731385FS	AATGGTGAAATTTTATAAGCAAGC	c10p112731385ES	AATGCTAGATGACAAGTTAGTGGG
chr10	113073553	113073840	113083563	113083850	+	42	287	4	noL1	COLO1T	0	0	L1PB4				c10p113073696FS	ATAATTTTATTCCACTGTTCTCCG	c10p113073696ES	AGACAAACACTAAGGGAATTCATC
chr10	113685931	113686102	113695941	113696112	+	25	171	4	L1PA4	"COLO1T,COLO1N"	538	336	"LTR33A,L1PA4"				c10p113686016FS	GTCCAGTAGAGAAACAGGACATTC	c10p113686016ES	CCACCCTAAAGACATCATTTTAAC
chr10	119582148	119582379	119592158	119592389	-	18	231	3	L1PA2	"COLO1T,COLO1N"	57	231	"(TTTA)n,MER5B"				c10p119582263FS	GGTATTAAATAGGGTTTGTTGCTC	c10p119582263ES	ATACACCATGGAATACTATGCAGC
chr10	121025369	121025602	121035379	121035612	-	105	233	5	L1PA3	"COLO1T,COLO1N"	683	310			GRK5		c10p121025485FS	AGGAAGAAAAACATACAGTGAACC	c10p121025485ES	ACAATGAGAACACATAGACACAGG
chr10	124445270	124445516	124455280	124455526	+	57	246	2	noL1	"COLO1T,COLO1N"	535	291	MER41D	"LINE:Beck,Ewing,Iskow,Stewart"			c10p124445393FS	AGTCTTAAGTTTTCACCAATGACC	c10p124445393ES	GATGATTCTAGACATGCTTTGATG
chr10	127735886	127736183	127745896	127746193	+	205	297	9	L1HS	"COLO1T,COLO1N"	439	301	"L1HS,(A)n"	LINE:dbRIP	ADAM12		c10p127736034FS	CTGCCATTAGATAGGAAAGTTAGC	c10p127736034ES	GAACTAGTTTACAGTCCCACCAAC
chr10	131266911	131267334	131376921	131377344	+	10	423	2	L1PA4	"COLO1T,COLO1N"	161	423	"L1PA4,MIRc"		MGMT		c10p131267122FS	TAATACAGCACTCCGTGTAATCTC	c10p131267122ES	ACCATCATTCTCAGCAAACTATTG
chr10	131784474	131785118	131894484	131895128	+	55	644	4	noL1	"COLO1T,COLO1N"	4	70	"L1MB5,L1PA7"		AK094118		c10p131784796FS	ATTTGTAAACATTTCTTCTCCACG	c10p131784796ES	GGCTAATATCCAGAATCTACAAGG
chr10	133388437	133388989	133538447	133538999	+	2772	552	29	L1HS	"COLO1T,COLO1N"	5598	560	"L1HS,AT_rich,L1MC4"				c10p133388713FS	TCAAGGAGAGAGAGAGAGAGAGAC	c10p133388713ES	TAATGCTAGATGACACGTTAGTGG
chr11	4598873	4599684	4642297	4643108	+	430	811	14	L1PA2	"COLO1T,COLO1N"	1135	411	"LTR71B,L1PA2,MER57B2"				c11p4599278FS	GAGGAAAGAATGATTTCTGAATTG	c11p4599278ES	ATTAAAAAGTCAGGAAACAACAGG
chr11	5395221	5395955	5438645	5439379	+	27	734	3	noL1	"COLO1T,COLO1N"	4	734	L1PA3		"OR51B5,HBE1,HBG2"		c11p5395588FS	TGCAATAGTTTACTGAGAATGAGG	c11p5395588ES	CCATAAAAACCCTAGAAGAAAACC
chr11	5899634	5899951	5943058	5943375	+	127	317	5	L1PA4	"COLO1T,COLO1N"	734	317	"L1MEf,L1PA4"		TRIM5		c11p5899792FS	TGTATTCTGCCATCTTCAGATTAG	c11p5899792ES	TATACACCGTGGAATACTATGCAG
chr11	6150878	6151514	6194302	6194938	+	4262	636	42	L1HS	"COLO1T,COLO1N"	10413	637	"L1HS,A-rich,(CAT)n"				c11p6151196FS	AAATAGAGCTGGTTAGGAAGTCTG	c11p6151196ES	TAATGCTAGATGACACGTTAGTGG
chr11	7210634	7211239	7254058	7254663	-	19497	605	46	L1HS	"COLO1T,COLO1N"	41750	569	"MLT1F2,L1HS,(T)n"				c11p7210936FS	TAGAGAAGGTCTCCATCCAATAGC	c11p7210936ES	ATGTTAGATGACACGTTAGTGGG
chr11	7718532	7718853	7761956	7762277	+	21	321	7	L1PA2	"COLO1T,COLO1N"	63	504	"L1M3,L1PA2"				c11p7718692FS	TTTGAAACTTCCTTCATTCTTTTC	c11p7718692ES	CAAATGTCCAACAATGATAGACTG
chr11	9599077	9599277	9642501	9642701	+	10	200	2	noL1	"COLO1T,COLO1N"	15	69	"Charlie2a,AluY"				c11p9599177FS	ATTTTCCTAAGTTGAATGAGTTGC	c11p9599177ES	TTTTTGTAAAGATGGGGTTTTG
chr11	13805241	13805770	13848665	13849194	-	1298	529	21	L1HS	"COLO1T,COLO1N"	3224	604	"(TTTA)n,L1HS,MLT1F1,AT_rich"				c11p13805505FS	AGGGAAGTATGCTTGAAGACTAAG	c11p13805505ES	CTAACGCTAGATGACACGTTAGTG
chr11	14605959	14606184	14649383	14649608	-	13	225	5	L1PA2	"COLO1T,COLO1N"	67	252	MER1B		PSMA1		c11p14606071FS	TGTTATAACGGAAAGCACATAGAG	c11p14606071ES	TGGGAGATATACCTAATGCTAGATG
chr11	14645552	14646282	14688976	14689706	+	28	730	3	L1PA3	"COLO1T,COLO1N"	59	772	"L2a,(TAA)n,L1PA3,L1PA4,LTR82A"		PDE3B		c11p14645917FS	GTTACAAAAAGATGTGTCATGCTC	c11p14645917ES	TAAATGACGAGTTAATGAGTGCAG
chr11	14700023	14700225	14743447	14743649	+	4792	202	6	L1PA2	"COLO1T,COLO1N"	955	200	"L1PA2,L1PA4"		PDE3B		c11p14700124FS	TTTGGAAAAAGTTTCTCTCTTGAC	c11p14700124ES	TCATTCTCAGTAAACTATCGCAAG
chr11	14943006	14943545	14986430	14986969	+	225	539	17	L1PA3	"COLO1T,COLO1N"	1331	541	"L2a,L1PA3"				c11p14943275FS	ACTATTCCTCAACTTCTGTCTTCC	c11p14943275ES	ACACCGCATATTCTCACTCATAG
chr11	15336821	15337008	15380245	15380432	+	176	187	6	noL1	"COLO1T,COLO1N"	706	209	L1MA8	"LINE:Ewing,Iskow"			c11p15336914FS	AAGAAAAGCCACCAAATACTAATC	c11p15336914ES	GATGGGGATGTAAATTAGTACAGC
chr11	15952069	15952562	15995493	15995986	-	813575	493	74	L1HS	"COLO1T,COLO1N"	1226258	608	"T-rich,L1HS"		SOX6		c11p15952315FS	TTAAGAGAGTTGGGAGTAAAGAGC	c11p15952315ES	CATGTCAAAGAATAAACCAAACAC
chr11	17006246	17006594	17049670	17050018	-	131	348	8	L1PA2	"COLO1T,COLO1N"	490	318	"AluJr,AluSx"				c11p17006420FS	AAACACATAAAGTGAAGTAAGGGC	c11p17006420ES	ACACCGCATATTCTCACTCATAG
chr11	17089962	17090472	17133386	17133896	+	28	510	8	noL1	"COLO1T,COLO1N"	68	510	"AluSx1,AluSq2,L1M5"		PIK3C2A		c11p17090217FS	ATTTTTACACAGGGTCTTGTTCTG	c11p17090217ES	CACCTGAAGTTAGGAGTTCGAG
chr11	19608943	19609285	19652367	19652709	-	54	342	5	L1PA3	"COLO1T,COLO1N"	37	339	"AluJb,L1PA3,AT_rich,A-rich"	LINE:Ewing	NAV2		c11p19609114FS	TACCATGCTTCCACACAATACTAC	c11p19609114ES	CACTTGTTGTGCTTTCTGTCTTAC
chr11	20389062	20389171	20432486	20432595	-	528	109	8	noL1	COLO1T	0	0			PRMT3		c11p20389116FS	AAAGTATATTTGTCACTGGTGCAG	c11p20389116ES	AGCAGGAAATCTTACAAAAATGAC
chr11	21431843	21432104	21475267	21475528	-	299	261	6	L1PA2	"COLO1T,COLO1N"	744	280	"L1PA2,L1ME1"		"NELL1,IDH3GL"		c11p21431973FS	TAATACCCATTCCTATTCCTTGTC	c11p21431973ES	TCATTCTCAGTAAACTATCGCAAG
chr11	21858300	21858601	21901724	21902025	+	118	301	5	L1PA4	"COLO1T,COLO1N"	505	310	"L1MA3,L1PA4"				c11p21858450FS	TATAGTTTGTTTGATGAGGTCCTG	c11p21858450ES	CAAACTATCACAAGGACAAACAAC
chr11	22156375	22156616	22199799	22200040	-	20	241	8	L1PA5	"COLO1T,COLO1N"	103	243	"THE1C,L1PA5"				c11p22156495FS	AACACATTCTCTCTTTACCCACTC	c11p22156495ES	AGAAAACTTACAATCAAGGCAGAG
chr11	23153923	23154095	23197347	23197519	-	57	172	2	L1PA3	"COLO1T,COLO1N"	217	197	L2a				c11p23154009FS	GATGCTGTAGTGTTTTACAAGGTG	c11p23154009ES	TGGGAGATATACCTAATGCTAGATG
chr11	23601215	23601455	23644639	23644879	+	21	240	8	noL1	"COLO1T,COLO1N"	188	240	L1MA7				c11p23601335FS	AAATCAATCATAAGCCAAAAGAAC	c11p23601335ES	TAGGCATTAATTTATTAGGATGGC
chr11	24312065	24312584	24355489	24356008	+	23411	519	55	L1HS	"COLO1T,COLO1N"	67720	520	"L1HS,L1MDa"	LINE:dbRIP			c11p24312324FS	ACAATATTCCAAGAGCTTAGTTCC	c11p24312324ES	TGGGAGATATACCTAATGCTAGATG
chr11	24407038	24407414	24450462	24450838	+	11	376	2	noL1	"COLO1T,COLO1N"	4	376	"AluSx1,(T)n"				c11p24407226FS	AAACAGAAATGCAGGTAGGTTAAG	c11p24407226ES	CAACCAACCAAACAAATAATAGTG
chr11	25079587	25079913	25123011	25123337	-	471	326	5	noL1	"COLO1T,COLO1N"	438	325		"LINE:Ewing,Stewart"			c11p25079750FS	CTACAGTGAGCTATGTACTCCAGC	c11p25079750ES	CAACTGAACAATAAGAAGCACAAC
chr11	26097735	26097978	26141159	26141402	+	329	243	8	L1PA3	"COLO1T,COLO1N"	3616	364	"L1PA3,MIR"				c11p26097856FS	TATCAGCTAATATTTACTGCGTGC	c11p26097856ES	ACAGACTGGATTAAGAAAATGTGG
chr11	26116300	26116542	26159724	26159966	-	94	242	4	noL1	"COLO1T,COLO1N"	370	592	MLT1G3-int	"LINE:Ewing,Stewart"			c11p26116421FS	CTGCTAGGTAGTCTCCTTGTTCAG	c11p26116421ES	TAGAAAAACCTAAAAAGCATCAGG
chr11	26375087	26375562	26418511	26418986	+	20	475	3	L1PA7	"COLO1T,COLO1N"	663	465		"LINE:dbRIP,Ewing"	ANO3		c11p26375324FS	TAAACGTTTGAGAAGATGAATACG	c11p26375324ES	TAATGTAGATGATGGGTTGATGAG
chr11	26949200	26949473	26992624	26992897	+	30	273	3	L1PA2	"COLO1T,COLO1N"	212	271	"L1PA2,L1PA5"				c11p26949336FS	TTGTAGTGTAGATGGAAAATCCAG	c11p26949336ES	TCATTCTCAGTAAACTATCGCAAG
chr11	28024811	28025217	28068235	28068641	+	98	406	3	L1PA3	"COLO1T,COLO1N"	150	435	"L1PA3,AluSq,A-rich"		KIF18A		c11p28025014FS	TTATTTGGATTTGACTTGTCATTG	c11p28025014ES	TGGAAATCATCATTCTCAGTAAAC
chr11	29120828	29121242	29164252	29164666	-	79	414	8	L1HS	"COLO1T,COLO1N"	705	414	"L1HS,Tigger2,MIRb"				c11p29121035FS	CTTTTCCTATAAGAGCACTGATCC	c11p29121035ES	GAACTAGTTTACAGTCCCACCAAC
chr11	30028976	30029372	30072400	30072796	-	48	396	8	L1PA3	"COLO1T,COLO1N"	145	398	"MamGypLTR1a,L1PA3,(T)n"				c11p30029174FS	ATCTCAGTTCACATGGTCACTTC	c11p30029174ES	TCATTCTCAGTAAACTATCGCAAG
chr11	30162719	30162907	30206143	30206331	+	23	188	2	L1PA4	"COLO1T,COLO1N"	121	65	"L1MC,(A)n,L1PA4"				c11p30162813FS	ATAAAGTTATGGCTTTCTGATTGG	c11p30162813ES	ACACCGCATATTCTCACTCATAG
chr11	30943541	30943711	30986965	30987135	-	73	170	6	L1HS	"COLO1T,COLO1N"	263	396	"L1M4,FordPrefect"		"DCDC5,KIAA1493"		c11p30943626FS	AAACTCAAGAATAGGCAGTGAATC	c11p30943626ES	GATAGACTGGATTAAGAAAATGTGG
chr11	31292774	31293851	31336198	31337275	-	84784	1077	56	L1HS	"COLO1T,COLO1N"	204181	1077	"L1HS,MLT1E1A,AluY"		"DCDC5,DCDC1"		c11p31293312FS	AGTTTATCTGATTAGGTCAGGCAC	c11p31293312ES	GAAACCCCCTCTCTACTAAAAATAC
chr11	31383183	31383568	31426607	31426992	-	18	385	4	noL1	"COLO1T,COLO1N"	21	384	"MSTD,AT_rich,AluSx"		DNAJC24		c11p31383375FS	CTTTGAAATTCCTCAGTGGTAATC	c11p31383375ES	CATCTCTACAACAAATTTTCATGG
chr11	31715567	31715858	31758991	31759282	+	255	291	10	L1PA4	"COLO1T,COLO1N"	1606	470	"L1MB1,L1PA4"		ELP4		c11p31715712FS	TACCACATTTATCTGTTGATGGAC	c11p31715712ES	AACTATGAGAACACATGGACACAG
chr11	32677732	32678207	32721156	32721631	+	14	475	2	noL1	"COLO1T,COLO1N"	52	65	"(TA)n,L1PA5"		CCDC73		c11p32677969FS	CAAACCTAGAAATTTATCTGACGC	c11p32677969ES	TAAGAGCTCAAGAACCAAAATCTC
chr11	33626702	33626923	33670126	33670347	+	40	221	2	noL1	"COLO1T,COLO1N"	84	422		"LINE:dbRIP,Ewing,Iskow"	C11orf41		c11p33626812FS	TTAGGCAGCTCTAGGTTCTAACTC	c11p33626812ES	AAACGCAGTCTTTTGTTATTAAGG
chr11	35178049	35178180	35221473	35221604	-	64	131	2	noL1	"COLO1T,COLO1N"	14	65	(T)n		CD44		c11p35178114FS	TCTATCCATTCCATTAAAATCTGAG	c11p35178114ES	TGATATTGTCACCCAATCTGTTAG
chr11	35557482	35557783	35600906	35601207	+	162	301	12	L1PA3	"COLO1T,COLO1N"	413	301	"L1PA3,L2c"				c11p35557632FS	ATAGCACTAGTTTCCTTTTGTTGG	c11p35557632ES	ATGATGAGTTCATGTCCTTTGTAG
chr11	36145548	36145749	36188972	36189173	+	260	201	4	noL1	COLO1T	0	0	MLT1C		LDLRAD3		c11p36145648FS	CACAGTGACTCTGAACTTCTCTTC	c11p36145648ES	TTATTTTAAGGAATTGGTTCATGC
chr11	36528669	36529787	36572093	36573211	-	1964564	1118	90	L1HS	"COLO1T,COLO1N"	4055808	1000	"L1HS,MamRep605,MLT1K,MLT1B"		RAG1		c11p36529228FS	GATGTCATCAGTCTTTTCTCAGTG	c11p36529228ES	AGAAAATATGACCATCTACAAGCC
chr11	37405403	37406081	37448827	37449505	+	30	678	10	L1PA4	"COLO1T,COLO1N"	167	697	"L1MA2,L1PA4"	LINE:dbRIP			c11p37405742FS	TGAACAAGGAAAACACACAGAC	c11p37405742ES	AGATAGGGATGGTTATCGTACAAG
chr11	38740744	38741045	38784168	38784469	-	40	301	3	L1PA2	"COLO1T,COLO1N"	177	207	"L1P1,L1PA2"				c11p38740894FS	TCCCTAGTAAATTGTGTTCCTAGC	c11p38740894ES	AAACGTAATCCATCACATAAACAG
chr11	39936774	39937264	39980198	39980688	+	13	490	3	noL1	"COLO1T,COLO1N"	3	523	"AluSx1,AluY"				c11p39937019FS	TTTTTAGTAGAGATGGGGTTTCAC	c11p39937019ES	AGGTCAGGAGTTCGAGACCAG
chr11	42875124	42875400	42918548	42918824	-	268	276	5	L1PA2	"COLO1T,COLO1N"	979	321	L1PA4				c11p42875262FS	TAAGTAGTGCCGCAATAAACATAC	c11p42875262ES	TCATTCTCAGTAAACTATCGCAAG
chr11	43630950	43631471	43674374	43674895	-	38	521	6	L1PA4	"COLO1T,COLO1N"	108	366	"L1ME1,MER21A"				c11p43631210FS	AGAACATGTATGCTGGTTTAAAGG	c11p43631210ES	AATGCTAAATGACAAGTTAATGGG
chr11	46816695	46817006	46860119	46860430	+	13	311	6	noL1	"COLO1T,COLO1N"	13	74	"AluJb,AT_rich"		CKAP5		c11p46816850FS	CCTTAAAGAGACACTTTTCTGAGC	c11p46816850ES	AAGATACTGCTTACACCCAAAAAC
chr11	48409910	48410036	48453334	48453460	-	23	126	5	L1PA4	"COLO1T,COLO1N"	181	139	L1PA4				c11p48409973FS	ACCTTTTCATTATTACTCTGTGGC	c11p48409973ES	GGACATTTCAGGTAACAAATAAATG
chr11	48712391	48712952	48755815	48756376	+	37637	561	39	noL1	"COLO1T,COLO1N"	59461	854	L1PA4	"LINE:dbRIP,Ewing,Iskow"			c11p48712671FS	CTTTGTGGTTTTATCTACCTTTGG	c11p48712671ES	AGACAGGTGATTTCTGCATTTC
chr11	48825094	48825864	48868518	48869288	-	162736	770	25	L1HS	"COLO1T,COLO1N"	352130	771	"L1PA2,ALR/Alpha,L1HS,AT_rich"				c11p48825479FS	AGTTGAACCTTCCTTTTGATAGTG	c11p48825479ES	TAATCCTAGATGACACGTTAGTGG
chr11	49081776	49082269	49125200	49125693	-	3011	493	24	L1HS	"COLO1T,COLO1N"	6076	394	L1HS				c11p49082022FS	ATATCATTCTTTGGCAGACTAAGC	c11p49082022ES	TCATTCTCAGTAAACTATCGCAAG
chr11	49108945	49109112	49152369	49152536	-	12	167	2	L1PA2	"COLO1T,COLO1N"	23	65	"LTR54,L1PA2"				c11p49109028FS	CTGTTCAGTAAAAATTATAGGGGC	c11p49109028ES	AAATCCCGTCTCTACTAAAAACAC
chr11	49600699	49600959	49644123	49644383	-	13	260	4	L1PA2	"COLO1T,COLO1N"	89	441			BC142657		c11p49600829FS	CTAGTGAACTTGAATGACAGGTTG	c11p49600829ES	AATGCTAGATGACAAGTTAGTGGG
chr11	49682743	49682921	49726167	49726345	+	13	178	6	L1HS	"COLO1T,COLO1N"	17	367	"L1HS,(A)n"		BC142657		c11p49682832FS	GGTAAGGTTATTCTGTGACTCAGC	c11p49682832ES	CTCTATAGGGCAGCTTTATTTCTG
chr11	49771212	49771335	49814636	49814759	-	184576	123	35	L1HS	"COLO1T,COLO1N"	449060	123	"L1HS,L2"		BC142657		c11p49771273FS	AGACATTTCCTTTAGTCACCTCTG	c11p49771273ES	CGTATGTTTATTGTGGCATTATTC
chr11	49890741	49891452	49934165	49934876	+	41	711	3	noL1	"COLO1T,COLO1N"	44	710	L1PA4				c11p49891096FS	ATGTGTTCTCATTGTTCAATTCC	c11p49891096ES	AAGAAAACCTAGGCATTACCATTC
chr11	50629595	50629936	50673019	50673360	+	384	341	23	L1HS	"COLO1T,COLO1N"	908	364	"L1HS,ALR/Alpha"				c11p50629765FS	ATTGTGAGAAACTTCTTTGTGATG	c11p50629765ES	TCATTCTCAGTAAACTATCGCAAG
chr11	50716544	50716776	50759968	50760200	-	36	232	2	noL1	"COLO1T,COLO1N"	27	436	ALR/Alpha				c11p50716660FS	AGCAGTTTTGGAATACTCTTTTTG	c11p50716660ES	TTGAAAGCAAACATCACTAAGAAG
chr11	51403795	51404055	51547219	51547479	-	52	260	4	L1PA3	"COLO1T,COLO1N"	190	393	"L1PA3,L1M4"				c11p51403925FS	ATCCCTTAAATTTCATTTTGTCTG	c11p51403925ES	TGAGTTCATGTCCTTTGTAGAGAC
chr11	51435383	51436273	51578807	51579697	+	13	890	4	noL1	"COLO1T,COLO1N"	12	573	ALR/Alpha				c11p51435828FS	CAGAAACTACTTTGTGATGATTGC	c11p51435828ES	CTTTTCCATTATAGACCTGAAAGC
chr11	54705367	54705776	54948791	54949200	+	32	409	4	noL1	"COLO1T,COLO1N"	146	75	ALR/Alpha				c11p54705571FS	ATAAAATCTGCAAAGGGATATTTG	c11p54705571ES	TCAAAAGATAGTTTCAGCTCTGTG
chr11	54722171	54722464	54965595	54965888	-	19	293	7	L1HS	"COLO1T,COLO1N"	161	421	"L1HS,ALR/Alpha"				c11p54722317FS	ATGTGAAGATATTTCCTTTTCCAC	c11p54722317ES	TCATTCTCAGTAAACTATCGCAAG
chr11	54726345	54726507	54969769	54969931	+	25	162	3	L1PA2	"COLO1T,COLO1N"	23	859	"L1PA2,ALR/Alpha"				c11p54726426FS	CATTTCTTTTGATTGAACAGTTTG	c11p54726426ES	TCATTCTCAGTAAACTATCGCAAG
chr11	55039267	55039565	55282691	55282989	-	10	298	3	L1PA3	"COLO1T,COLO1N"	6	66	"L1PA3,AT_rich"				c11p55039416FS	TGGAAGCTGTTTAAAATTAAGCTC	c11p55039416ES	CTGTAAACTAGTTCAACCCTTGTG
chr11	57928412	57928843	58171836	58172267	+	3643	431	16	L1PA16	"COLO1T,COLO1N"	12168	471	MIRb	"LINE:dbRIP,Ewing,Iskow,Stewart"			c11p57928627FS	ACTGTGGACTACTAGAGGATGGAG	c11p57928627ES	ATATATGCTTAGTAAATGGGCTGG
chr11	58344046	58344154	58587470	58587578	+	55	108	3	noL1	"COLO1T,COLO1N"	319	301	L1PA5				c11p58344100FS	ATCCTCTTTTATTTCATTGAGCAG	c11p58344100ES	CCCTAACTCATTTTATGAGACCAG
chr11	59572221	59572801	59815645	59816225	-	3538	580	31	L1HS	"COLO1T,COLO1N"	8623	558	"L1HS,MIR,(T)n"				c11p59572511FS	TTTCAATTAAATGCTGTCTGTAGC	c11p59572511ES	TGGGAGATATACCTAATGCTAGATG
chr11	60062182	60062338	60305606	60305762	+	530	156	15	L1PA2	"COLO1T,COLO1N"	1657	171	"L1PA2,L1MA7"		MS4A13		c11p60062260FS	ATTCTGCCTCTCATAGGATAGATG	c11p60062260ES	CAAATGTCCAACAATGATAGACTG
chr11	60124666	60125009	60368090	60368433	-	17	343	3	L1PA3	"COLO1T,COLO1N"	69	572	L1PA13				c11p60124837FS	GGTACATGTGCAGGTTTGTTATAC	c11p60124837ES	AACACCACATGTTCTCACTCATAG
chr11	60610367	60610713	60853791	60854137	+	11066	346	43	L1HS	"COLO1T,COLO1N"	19541	353	"L1ME3A,L1HS,AT_rich,AluSx"	LINE:dbRIP			c11p60610540FS	ACTTGGATAAGGTAAACGTGAATG	c11p60610540ES	GATGAGTTCATATCCTTTGTAGGG
chr11	62644230	62644603	62887654	62888027	+	61	373	8	L1PA2	"COLO1T,COLO1N"	226	575	"L1P1,L1PA2"		MGC34821		c11p62644416FS	GGGTAACAAAAATTACAGAACAGG	c11p62644416ES	ATGTCTTCTTTTGAGAAGTGTCTG
chr11	62870268	62870568	63113692	63113992	-	50	300	2	noL1	"COLO1T,COLO1N"	57	65	L1PA3				c11p62870418FS	AGAAAGTCATTGGTAGCTAGATGG	c11p62870418ES	ATGCAAAAATCCTCAAGAAAATAC
chr11	62965375	62965588	63208799	63209012	+	14	213	2	L1PA2	"COLO1T,COLO1N"	56	429	L1PA7				c11p62965481FS	GAACTAATTTACACTCCCACCAAC	c11p62965481ES	TCATTCTCAGTAAACTATCGCAAG
chr11	67355720	67356170	67599144	67599594	+	1659	450	14	noL1	"COLO1T,COLO1N"	7023	496	AluSz	"LINE:dbRIP,Ewing,Iskow"			c11p67355945FS	GTGACTAGGAATAGGAAGAAAACG	c11p67355945ES	AAGAACTGAGATAGAACTGGGTTG
chr11	72285430	72286036	72607782	72608388	+	51	606	5	noL1	"COLO1T,COLO1N"	284	606	"MER2,(A)n,AluY,MIRb"		FCHSD2		c11p72285733FS	CCCTAATACAATGTAAATGCTATGC	c11p72285733ES	ATGAGATCCTCTTTGTGGAATAAG
chr11	72438336	72438838	72760688	72761190	+	46968	502	54	L1HS	"COLO1T,COLO1N"	95469	531	"L1HS,L3,MER58A"		FCHSD2		c11p72438587FS	TTTTTAATATAGAGGCTGGCAAAC	c11p72438587ES	AATTTTTATGATTGGAAAGACTGG
chr11	73324121	73324347	73646473	73646699	-	22	226	11	noL1	"COLO1T,COLO1N"	27	188	"SVA_D,(T)n"				c11p73324234FS	GCTCTTTAATTGACTTTTCTGTCC	c11p73324234ES	TGTGTAGAAAGAAGTAGACATGGG
chr11	74265778	74266189	74588130	74588541	-	21	411	6	L1PA2	"COLO1T,COLO1N"	117	438	"L1PA2,HUERS-P3-int"		"DKFZp686K09128,FLJ00225,XRRA1"		c11p74265983FS	GTAAGGGCTATTCATCCTACTCAG	c11p74265983ES	TCATTCTCAGTAAACTATCGCAAG
chr11	78065998	78066500	78388350	78388852	-	2787	502	17	L1HS	"COLO1T,COLO1N"	7698	378	"L1HS,AT_rich,AluJr4,L1M5"	LINE:dbRIP	ODZ4		c11p78066249FS	AGATTTTCAAATCAAAATAGATTCC	c11p78066249ES	ACACCGCATATTCTCACTCATAG
chr11	81550568	81550897	81872920	81873249	+	48	329	7	L1HS	"COLO1T,COLO1N"	568	351	"L1HS,AT_rich,L1ME3"		BC041900		c11p81550732FS	ACTTAATTCACATTTTCCTCAAGC	c11p81550732ES	GTTGAGTTCATATCCTTTGTAGGG
chr11	82783209	82783419	83105561	83105771	-	10	210	6	L1PA2	"COLO1T,COLO1N"	15	211	"L1PA2,MER58A"		BC070093		c11p82783314FS	AATCAAAGAAAAACACTCTGAAGG	c11p82783314ES	CAAATGTCCAACAATGATAGACTG
chr11	84719440	84719893	85041792	85042245	+	1636	453	18	L1HS	"COLO1T,COLO1N"	977	709	L1HS		DLG2		c11p84719666FS	AATGATTTTATTACCGCTAGCATC	c11p84719666ES	TCATTCTCAGTAAACTATCGCAAG
chr11	84889202	84889677	85211554	85212029	+	30216	475	41	L1HS	"COLO1T,COLO1N"	87453	872	"(TAAA)n,L1HS,L1PA7"		DLG2		c11p84889439FS	AGATGTGTGTTGTTATTTCTGAGG	c11p84889439ES	TCATTCTCAGTAAACTATCGCAAG
chr11	85935285	85935981	86257637	86258333	+	1996	696	4	L1PA7	"COLO1T,COLO1N"	2857	703	"AluY,L1PA7"		ME3		c11p85935633FS	ATGAACTTAACCTTTTTATGGCTG	c11p85935633ES	GTGACAGATACGAACAGACACTTC
chr11	86144384	86144522	86466736	86466874	-	31	138	3	L1PA2	"COLO1T,COLO1N"	113	174	"L1PA2,MIR3"				c11p86144453FS	CTCAGTGTTTTCTTAAAACTTCCC	c11p86144453ES	CAAATGTCCAACAATGATAGACTG
chr11	86728317	86728780	87050669	87051132	-	33170	463	43	L1HS	"COLO1T,COLO1N"	65433	627	"L1ME3B,L1MEg,L1HS"				c11p86728548FS	TGTATCTGACTTCTTTCACTCAGC	c11p86728548ES	TCATTCTCAGTAAACTATCGCAAG
chr11	87085888	87086702	87408240	87409054	-	139085	814	68	L1PA2	"COLO1T,COLO1N"	324717	814	"L1PA2,AT_rich,L1P4,L1P4a"				c11p87086295FS	TATAGAACAGACATGCTTCAGTCC	c11p87086295ES	TAATGCTAGATGACACGTTAGTGG
chr11	87319064	87319277	87641416	87641629	-	114	213	3	noL1	COLO1T	0	0	L1PA4				c11p87319170FS	GAACTAGTTTACAGTCCCACCAAC	c11p87319170ES	TCAAACTATGCTACAAGGCTACAG
chr11	88291438	88291557	88651790	88651909	+	12	119	4	L1PA3	"COLO1T,COLO1N"	45	120	L1MA3		GRM5		c11p88291497FS	AAGGCAGCATATTGTTGAGTTTAG	c11p88291497ES	CCTGGCAAAGAAATATACCTAATG
chr11	89669855	89670356	90030207	90030708	-	47	501	2	noL1	"COLO1T,COLO1N"	101	501	L1PA7				c11p89670105FS	TTGGGTATTTCTTCTAATGCTACC	c11p89670105ES	GGGCAAATATTTCATGACTAAAAC
chr11	89772610	89772944	90132962	90133296	-	559	334	20	L1HS	"COLO1T,COLO1N"	1251	336	"L1MD2,L1HS,(T)n"				c11p89772777FS	ATCCATGGAGTTACCATGAATGAG	c11p89772777ES	TCATTCTCAGTAAACTATCGCAAG
chr11	90728428	90728622	91088780	91088974	+	30	194	3	noL1	COLO1T	0	0	L1MC5				c11p90728525FS	CCTACCTTGTTTTTGTTGAAATG	c11p90728525ES	TTCTTCCTCTGAAAATTCTCATTC
chr11	90952791	90953026	91313143	91313378	+	1609	235	17	L1PA3	"COLO1T,COLO1N"	15756	487	"L1PA3,L1PA6"				c11p90952908FS	GATTCCCTCTTTTTCTATTGATTG	c11p90952908ES	TCATTCTCAGTAAACTATCGCAAG
chr11	92515442	92515758	92875794	92876110	+	125463	316	25	L1HS	"COLO1T,COLO1N"	214419	374	"L1PA10,L1HS,L1PA8A"				c11p92515600FS	TTAAATACCAATGCACAACATTTC	c11p92515600ES	GATGAGTTCATATCCTTTGTAGGG
chr11	92799777	92800539	93160129	93160891	+	45	762	9	L1HS	"COLO1T,COLO1N"	854	769	"L1HS,L1PA4"		CCDC67		c11p92800158FS	TAGATTCTGGATATTAGCCCTTTG	c11p92800158ES	TGGGAGATATACCTAATGCTAGATG
chr11	93415643	93415859	93775995	93776211	+	24	216	4	L1PA2	"COLO1T,COLO1N"	87	441	L1PA2		HEPHL1		c11p93415751FS	AGGATCTCTTTCTTGTGTACTTGG	c11p93415751ES	AATACTATGCAGCCATACAAAATG
chr11	93714234	93714685	94074586	94075037	+	3128	451	37	L1HS	"COLO1T,COLO1N"	10490	451	"L1HS,L1MEf"	LINE:dbRIP			c11p93714459FS	CATTCATTTGAATTGTTGTTTTTC	c11p93714459ES	TCATTCTCAGTAAACTATCGCAAG
chr11	93749351	93749508	94109703	94109860	+	21	157	3	L1PA4	"COLO1T,COLO1N"	45	356	MIRb				c11p93749429FS	TTTTGTATTTACAATCTGTGCTGC	c11p93749429ES	TCATTCTCAGCAAACTATCACAAG
chr11	94323974	94324256	94684326	94684608	+	21	282	5	noL1	"COLO1T,COLO1N"	75	191	AluSq	"LINE:Ewing,Iskow"			c11p94324115FS	ATGTCACAGCTGCACTAACTACTC	c11p94324115ES	AAAATACATTTGTAGATATGGGGC
chr11	94815010	94815408	95175362	95175760	+	1133	398	26	L1HS	"COLO1T,COLO1N"	3222	629	"L1HS,MER58C,MIRb"	LINE:dbRIP			c11p94815209FS	TTATTGTAGGGATTATCTGGTTGC	c11p94815209ES	GATGAGTTCATATCCTTTGTAGGG
chr11	96020156	96020263	96514946	96515053	+	14	107	5	noL1	"COLO1T,COLO1N"	16	73	(A)n				c11p96020209FS	TCCCTTAAGAGCTCACTACAGAAG	c11p96020209ES	TTTAAGAGCTGTAACACTCACTGC
chr11	96313181	96313617	96807971	96808407	+	5252	436	35	L1PA2	"COLO1T,COLO1N"	8922	430	"L2a,L1PA2,A-rich"				c11p96313399FS	ATATGATTTGGGAGTAGAGCAGTC	c11p96313399ES	TCATTCTCAGTAAACTATCGCAAG
chr11	96939349	96939534	97434139	97434324	-	100	185	3	noL1	"COLO1T,COLO1N"	146	215	L1MEc	"LINE:Ewing,Iskow"			c11p96939441FS	TACACTGCTGGTGAGAATGTAAAC	c11p96939441ES	ACCAGACACTCCTCTAGTTCTACC
chr11	97303654	97303798	97798444	97798588	+	16	144	6	L1PA4	"COLO1T,COLO1N"	50	216	"HAL1,A-rich"				c11p97303726FS	TTATTTATTGGGAAAAGGTATTGC	c11p97303726ES	ATGATGAGTTCATGTCCTTTGTAG
chr11	97391155	97391434	97885945	97886224	+	12	279	2	noL1	"COLO1T,COLO1N"	5	67	L1PA7				c11p97391294FS	TCTATTCAGGGATTCAACTTCTTC	c11p97391294ES	GAACACACAGATTCATAAAGCAAG
chr11	98983997	98984569	99478787	99479359	+	57753	572	25	L1HS	"COLO1T,COLO1N"	151582	599	"L1HS,MLT1B"	LINE:dbRIP	CNTN5		c11p98984283FS	ATGTGAACTAGAAGAATGGAAAGC	c11p98984283ES	TGGGAGATATACCTAATGCTAGATG
chr11	99136948	99137454	99631738	99632244	-	282	506	6	L1PA3	"COLO1T,COLO1N"	733	307	L1PA3		CNTN5		c11p99137201FS	GTATCATGTTGACTACAACTTGGC	c11p99137201ES	CAAATGTCCAACAATGATAGACTG
chr11	100935566	100935859	101430356	101430649	-	14	293	4	noL1	"COLO1T,COLO1N"	53	294	L1PA4		TRPC6		c11p100935712FS	TAAAAAGTTTGAGAAGCACTAGCC	c11p100935712ES	TGGTCCAAAAGAAGTATATAACGG
chr11	102352316	102352727	102847106	102847517	+	569	411	10	L1HS	"COLO1T,COLO1N"	1965	434	"L1HS,LTR62"				c11p102352521FS	AAAGAGAGGACTCCTGTGAATATG	c11p102352521ES	TCACCTAATCAATAGAGACTGCAC
chr11	103626859	103627082	104121649	104121872	-	3568	223	30	L1PA3	"COLO1T,COLO1N"	12624	459	"L2a,L1PA3"				c11p103626970FS	TACATACTCCAAACACAAATGAGG	c11p103626970ES	TCATTTTCAGTAAACTATCGCAAG
chr11	104060936	104061358	104555726	104556148	-	111628	422	51	noL1	"COLO1T,COLO1N"	140676	328	MER34B	"LINE:Ewing,Iskow"			c11p104061147FS	CTACCTTCTAATGCTGAACTACCC	c11p104061147ES	ATTAAATTATCAAAAACCTTCCCC
chr11	104839062	104839252	105333852	105334042	+	1702	190	15	L1PA3	"COLO1T,COLO1N"	6336	478	L1MA3				c11p104839157FS	TTGTTCTAAGTGTTTTTATGCCAG	c11p104839157ES	ATGATGAGTTCATGTCCTTTGTAG
chr11	106192326	106192501	106687116	106687291	+	16	175	4	noL1	"COLO1T,COLO1N"	18	453	L1MDb		GUCY1A2		c11p106192413FS	TTCAGATTATCAGTTTCATCTTGG	c11p106192413ES	TTGTTTTAAGCTACCAAGTTTGTG
chr11	106259718	106260417	106754508	106755207	+	22	699	3	noL1	"COLO1T,COLO1N"	116	699	"L2b,L1PA5"		GUCY1A2		c11p106260067FS	GTTTTCTTAGTTTACTTTGCAGGC	c11p106260067ES	TAAATTATGTCCTCTTGAGCAATG
chr11	108059926	108060188	108554716	108554978	-	205	262	14	L1HS	"COLO1T,COLO1N"	987	275	"T-rich,L1HS"		DDX10		c11p108060057FS	TGATAGAAATTATTGCCTAGCTCC	c11p108060057ES	CTGATGAGTTCATGTCCTTTGTAG
chr11	108553016	108553501	109047806	109048291	-	697	485	23	L1HS	"COLO1T,COLO1N"	1573	485	"L1HS,L2b,(T)n"				c11p108553258FS	ACCTCTGATTCTCTTCTGTGTACC	c11p108553258ES	TCATTCTCAGTAAACTATCGCAAG
chr11	108867644	108868059	109362434	109362849	-	11	415	3	L1PA2	"COLO1T,COLO1N"	33	522	"L1PA2,MSTA"				c11p108867851FS	TTTAATTGTAATCTCCAGTGTTGG	c11p108867851ES	CTCATGTTACATATTAGCTGTGCC
chr11	109107843	109108267	109602633	109603057	+	36	424	7	L1PA4	"COLO1T,COLO1N"	229	428	"L1PA4,LOR1b"				c11p109108055FS	ATAACTATAAATGCCAACCAAAGC	c11p109108055ES	AGAAATGTTCTCACTCATAGGTGG
chr11	109882775	109883076	110377565	110377866	-	11681	301	18	noL1	"COLO1T,COLO1N"	26830	587	MIRb	"LINE:Beck,Ewing,Iskow,Stewart"			c11p109882925FS	GTTAAAAAGGCACTTCTGAGAAAC	c11p109882925ES	TAGTCCCTGACATTTATGTAGCAG
chr11	110035716	110036014	110530506	110530804	+	24	298	9	L1PA2	"COLO1T,COLO1N"	46	79	L1PA2		ARHGAP20		c11p110035865FS	TACACCACTCTGTGAAAACAAAAG	c11p110035865ES	ATTAGCCCTTTGTCAGATGAGTAG
chr11	110076374	110076550	110571164	110571340	-	130	176	4	L1PA3	"COLO1T,COLO1N"	1533	416	L1PA3		ARHGAP20		c11p110076462FS	AAGATTAAAGTTGGAGGTGAACTG	c11p110076462ES	CAAATGTCCAACAATGATAGACTG
chr11	111700012	111700258	112194802	112195048	-	24	246	5	L1PA2	"COLO1T,COLO1N"	92	246	"L1PA2,L1PA6"				c11p111700135FS	GAACTAATTTACACTCCCACCAAC	c11p111700135ES	CAAATGTCCAACAATGATAGACTG
chr11	114714329	114714870	115209119	115209660	-	13839	541	45	L1HS	"COLO1T,COLO1N"	31564	510	"L1HS,(T)n"		CADM1		c11p114714599FS	CAAAAACCCTAAGAGGTAGAAACC	c11p114714599ES	GAGGGATAGCATTGGGAGATATAC
chr11	114813334	114813762	115308124	115308552	+	2960	428	20	noL1	COLO1T	0	0			CADM1		c11p114813548FS	AATAGTAATTTTGTTATGGGCCAG	c11p114813548ES	TTTTTCTTTTCCTGTTTTAAGGAG
chr11	119853289	119853828	120348079	120348618	+	151	539	3	noL1	"COLO1T,COLO1N"	229	743	AluSq2		ARHGEF12	ARHGEF12.35	c11p119853558FS	GTGTTATACTGACACACAGAAGGC	c11p119853558ES	TTTTTGTATTTTGGATTTCTTTCC
chr11	121196952	121197258	121691742	121692048	-	2264	306	14	L1HS	"COLO1T,COLO1N"	4733	316	"T-rich,L1HS"				c11p121197105FS	ATTTATTGGACGGTAATTTAGCAG	c11p121197105ES	TCATTCTCAGTAAACTATCGCAAG
chr11	121237313	121237748	121732103	121732538	+	188	435	18	L1PA4	"COLO1T,COLO1N"	857	453	"L2a,L1M5"				c11p121237530FS	CCCATCCTATTCAGAGTGAAATAC	c11p121237530ES	AATGCTAAATGACAAGTTAATGGG
chr11	121854415	121855111	122349205	122349901	+	13439	696	52	L1HS	"COLO1T,COLO1N"	50672	696	"L1HS,MLT1K,A-rich"	LINE:dbRIP			c11p121854763FS	ACTTGACCCAGTTTAAACAGAAAG	c11p121854763ES	TGGGAGATATACCTAATGCTAGATG
chr11	122168173	122168284	122662963	122663074	-	13	111	3	noL1	"COLO1T,COLO1N"	25	76	AluSx		UBASH3B		c11p122168228FS	GTTATGAACCAAGACAAGTTGATG	c11p122168228ES	AATTTAAGTAACTGTAGCCCAAGG
chr11	122379335	122379821	122874125	122874611	+	25	486	4	noL1	COLO1T	0	0	"Charlie18a,L2a"				c11p122379578FS	TTTTCAAAACCTCCTACCATTTAC	c11p122379578ES	ATTACTCTGAGTTGTCCAATGAGC
chr11	124917684	124918028	125412474	125412818	+	133224	344	62	L1HS	"COLO1T,COLO1N"	169596	339	"L1HS,MER4B-int"				c11p124917856FS	AAGAGAAAGACCTGAATTTTTGAG	c11p124917856ES	GATGAGTTCATATCCTTTGTAGGG
chr11	125765722	125766425	126260512	126261215	-	23	703	7	noL1	"COLO1T,COLO1N"	51	77	"L1MB3,L1M5"		ST3GAL4		c11p125766073FS	CCTTTGTGTCAGTTTGTACTTCTG	c11p125766073ES	ATAATGCATGCAATCAACAAATAC
chr11	126744246	126744374	127239036	127239164	+	17	128	9	L1PA3	"COLO1T,COLO1N"	23	128	L1PA3				c11p126744310FS	GGAATGAAGTGTAAAAATTTCCC	c11p126744310ES	TAGACTGGATTAAGAAAATCTGGC
chr11	127243536	127243820	127738326	127738610	-	87	284	10	L1PA3	"COLO1T,COLO1N"	139	447	"L1PA3,AT_rich"				c11p127243678FS	CTGCATTAAGAGTCTGTACAATGG	c11p127243678ES	TAGATTGGATTAAGAAAATGTGGC
chr11	128977985	128978422	129472775	129473212	+	18	437	4	noL1	"COLO1T,COLO1N"	63	437	"L1PA8,L1ME3F"				c11p128978203FS	TGTGTTTCTTGTTCTATGAAATGC	c11p128978203ES	GGGAATGTAAATTAGTTCAACCAC
chr11	130819144	130819324	131313934	131314114	+	407	180	2	noL1	"COLO1T,COLO1N"	1	65	"MLT1F2,(A)n"		NTM		c11p130819234FS	AAACATAGTCCATGATCTCTTTCC	c11p130819234ES	TTAATGAGTAGACCACAGAAGCAG
chr11	131128978	131129406	131623768	131624196	+	58	428	2	L1PA3	"COLO1T,COLO1N"	260	513	"L1PA3,L1PA4"		NTM		c11p131129192FS	AAGTAGCTGGGATTACAGATATGC	c11p131129192ES	TCATTCTCAGTAAACTATCCCAAG
chr11	131710833	131711507	132205623	132206297	+	23	674	4	noL1	"COLO1T,COLO1N"	33	69			"NTM,HNT"	"NTM.L,HNT.L"	c11p131711170FS	GTACTGACGGTACTGCTTGTTCAG	c11p131711170ES	CACAAACAAGTCACAAAAGATACC
chr11	131716549	131716910	132211339	132211700	+	17	361	4	noL1	COLO1T	0	0	MIR3				c11p131716729FS	ATCTCCTATATAGCTCCACAAAGC	c11p131716729ES	CAACTGTAAGAGTGAGACAGATGC
chr11	133214378	133214837	133709168	133709627	+	16	459	3	L1PA4	"COLO1T,COLO1N"	23	459	"L1MCb,L1PA4"				c11p133214607FS	TATGTGACACCTTTTGAGATTGTC	c11p133214607ES	ATTAAAAAGTCAGGAAACAACAGG
chr11	133810374	133810876	134305164	134305666	-	24941	502	25	noL1	"COLO1T,COLO1N"	76331	595	MIRb	"LINE:dbRIP,Ewing,Iskow,Stewart"			c11p133810625FS	AACAACAACAACAACAAACAAAAC	c11p133810625ES	CTGAAAGTGCAAGATTGGAATG
chr12	1798166	1798456	1927905	1928195	+	11	290	6	noL1	"COLO1T,COLO1N"	13	290	"SVA_D,SVA_B"		CACNA2D4		c12p1798311FS	CATAAACATACTTCCTGCTTCTCC	c12p1798311ES	CTTTTCATTTTGTTCTGCACTAAG
chr12	2109618	2109781	2239357	2239520	-	11	163	5	L1PA2	"COLO1T,COLO1N"	25	163	"L1PA2,(T)n"		CACNA1C		c12p2109699FS	GAACCAGTTGATCAAGTCCATTAC	c12p2109699ES	CAAATGTCCAACAATGATAGACTG
chr12	2260256	2260404	2389995	2390143	-	12	148	4	L1PA4	"COLO1T,COLO1N"	103	163	"L1MEf,L1PA4"		CACNA1C		c12p2260330FS	TTAACCTCTTGATACTTTGCTGTG	c12p2260330ES	GAAAAGATCATTGACTGCCTAAAC
chr12	3478127	3478680	3607866	3608419	-	32148	553	72	L1HS	"COLO1T,COLO1N"	59403	582	"L1HS,AT_rich,MLT1C"	LINE:dbRIP	PRMT8		c12p3478403FS	TGTCTAACAAAGTATAGCTCTTCGG	c12p3478403ES	ACACCGCATATTCTCACTCATAG
chr12	4117757	4117873	4247496	4247612	-	10	116	2	L1PA5	"COLO1T,COLO1N"	7	116	"L1PA5,MER103C"				c12p4117815FS	GTAGTGGGACCCCATCTCTAC	c12p4117815ES	CAAATGTCCAACAATGATAGACTG
chr12	8760298	8760987	8869031	8869720	-	22	689	7	noL1	"COLO1T,COLO1N"	14	706	"FRAM,MIR,(T)n"		RIMKLB		c12p8760642FS	ATTTTCACTTTATTCTCAAGTGGC	c12p8760642ES	ATTTTAGAACATTTCCCTTATCCC
chr12	11082455	11082666	11191188	11191399	-	160	211	4	noL1	"COLO1T,COLO1N"	757	212	L1ME3B		"PRB4,PRR4,PROL4,PRH1"		c12p11082560FS	ATCCCAATATATGTCTTCTTGCTG	c12p11082560ES	TATTTATATTTTCCCATGGACACC
chr12	11427469	11427650	11536202	11536383	+	12	181	3	L1PA4	"COLO1T,COLO1N"	8	65	"T-rich,L1PA4,L1PB1"				c12p11427559FS	TAACTTAGGAATGGAAAACCAAAC	c12p11427559ES	GGCACTATTCACAATAGCAAAGAC
chr12	12824528	12825001	12933261	12933734	-	3233	473	33	noL1	"COLO1T,COLO1N"	7295	471	"AluJb,MamRep4096"	"LINE:dbRIP,Ewing,Iskow,Stewart"	"APOLD1,DDX47"		c12p12824764FS	TGTTCTAGAGCACTTACATTCTGG	c12p12824764ES	AAGTTATGTGATGATGACTTTTTCC
chr12	13442798	13443165	13551531	13551898	+	647	367	7	L1PA2	"COLO1T,COLO1N"	3210	388	"L1P1,L1PA2"				c12p13442981FS	ATCAAGCTACCAATGACTTTCTTC	c12p13442981ES	TCATTCTCAGTAAACTATCGCAAG
chr12	14226579	14227170	14335312	14335903	+	249	591	11	L1HS	"COLO1T,COLO1N"	417	593	"L1HS,AluY,L1MEc"				c12p14226874FS	TATTGAAATTTGTTTTATAGCCCC	c12p14226874ES	TGGGAGATATACCTAATGCTAGATG
chr12	17785055	17785517	17893788	17894250	-	19	462	10	L1HS	"COLO1T,COLO1N"	305	466	"L1HS,(TTTA)n,ERVL-E-int"				c12p17785286FS	ATTAAGCTAATGGGTAGTGTGAGC	c12p17785286ES	TATTTGTAAGGAAGAGTCCTCTGG
chr12	18652901	18653095	18761634	18761828	+	40	194	4	L1PA4	"COLO1T,COLO1N"	166	216	L1PA4		PIK3C2G		c12p18652998FS	TTAAAAGTGTGGCCTTTAGAAATC	c12p18652998ES	GATGAGTTCATATCCTTTGTAGGG
chr12	19810940	19811370	19919673	19920103	+	81	430	8	L1HS	"COLO1T,COLO1N"	433	476	"L1HS,L1PA15"	LINE:Iskow			c12p19811155FS	AGGGATAAATCCAACTTTATTGTG	c12p19811155ES	GAACTAGAAAAGCAAGAACAAACC
chr12	22186464	22187182	22295197	22295915	+	53	718	8	L1PA3	"COLO1T,COLO1N"	113	346	"L1PA3,L1PA5"				c12p22186823FS	AAACTATTCTCCCATGTTTTCATC	c12p22186823ES	TCATTCTCAGTAAACTATCGCAAG
chr12	22778629	22779010	22887362	22887743	-	57	381	9	L1PA2	"COLO1T,COLO1N"	230	430	"L1PA2,AT_rich"				c12p22778819FS	TTTCTGGAGTTCTTTAGTACTGGG	c12p22778819ES	ATGATGAGTTCATGTCCTTTGTAG
chr12	23461770	23461959	23570503	23570692	-	22	189	4	L1PA3	"COLO1T,COLO1N"	44	247	"L1PA3,AluYc"				c12p23461864FS	AAAAGACCTACACCTGTGTTTACC	c12p23461864ES	CTCTCTTCTGGCTTGTAGAGTTTC
chr12	23565167	23565942	23673900	23674675	-	71	775	6	L1PA3	"COLO1T,COLO1N"	259	409	"L1PA3,L1MEg,L1PA4"				c12p23565554FS	AGTTTTGTCTCAGAGGAGTACCTG	c12p23565554ES	AATGCTAAATGACAAGTTAATGGG
chr12	25586894	25587159	25695627	25695892	+	30	265	5	L1PA3	"COLO1T,COLO1N"	97	266	"L1PA3,L1MEc"		IFLTD1		c12p25587026FS	AATGTCCTTGTCTGTTTTGGTATC	c12p25587026ES	ACACTGCATATTCTCACTCATAGG
chr12	26812584	26812790	26921317	26921523	+	54	206	7	L1HS	"COLO1T,COLO1N"	170	396	"L1HS,(A)n,L1PA7"		"ITPR2,TIPR"		c12p26812687FS	TTTTTACTAGCATTTTTGAAAGGG	c12p26812687ES	CTGACCATGATTCTTACCTAATCC
chr12	27355546	27355779	27464279	27464512	-	76	233	5	noL1	"COLO1T,COLO1N"	107	416			"KIAA0965,STK38L"		c12p27355662FS	ATAGGTCATACTTTCCAACCTTTG	c12p27355662ES	TAAATTGGTACAGCAAACCTAAGC
chr12	28116717	28117647	28225450	28226380	-	348	930	7	noL1	"COLO1T,COLO1N"	2592	908	L1MA8	LINE:Ewing			c12p28117182FS	AAATGAATTTCTGGATATGACCTC	c12p28117182ES	ATGTATTCTTTGACCAACATCTCC
chr12	28563752	28564052	28672485	28672785	-	20	300	2	L1PA5	"COLO1T,COLO1N"	9	646	"L1PB1,L1PA5"		CCDC91		c12p28563902FS	ACAGTGTTTTCTAGTTTTCCTTGC	c12p28563902ES	AGAACTAAATACCATTTGACCCAG
chr12	28796055	28796196	28904788	28904929	-	41	141	3	L1PA3	"COLO1T,COLO1N"	52	406	L1PA3				c12p28796125FS	TGAGTCAACATGAAGAAATAATGC	c12p28796125ES	TACTATGCAGCCATAAAAATGATG
chr12	30382697	30382895	30491430	30491628	+	11	198	4	L1PA4	"COLO1T,COLO1N"	34	258	AluSq2				c12p30382796FS	TAGAAACTCAGTTAATCCCTTTGG	c12p30382796ES	AATAATGAGAACACATGGACACAG
chr12	33216695	33217011	33325428	33325744	-	13	316	2	noL1	"COLO1T,COLO1N"	312	318	"LTR67B,Kanga1"	"LINE:dbRIP,Ewing,Iskow,Stewart"			c12p33216853FS	CTGCATTTTACAGCTAAGTGTCC	c12p33216853ES	ACTGGAAAAATAAACATAAGGCAG
chr12	33219931	33220387	33328664	33329120	-	3318	456	15	L1PA4	"COLO1T,COLO1N"	10122	683	"L1MCa,AluSc"				c12p33220159FS	TTGCCTTACATATTTCAATGTTTC	c12p33220159ES	AATGCTAAATGACAAGTTAATGGG
chr12	33784776	33784974	33893509	33893707	+	11	198	3	L1PA2	"COLO1T,COLO1N"	104	205	"L1MA9,L1PA2,(CAAT)n"				c12p33784875FS	TTGTCTGTTTCTACCTTCAGTTTG	c12p33784875ES	TCATTCTCAGTAAACTATCGCAAG
chr12	33908326	33908608	34017059	34017341	-	1610	282	19	noL1	"COLO1T,COLO1N"	7274	283	L1MA9	LINE:Ewing			c12p33908467FS	TGCTTTTTGTTCTACCTTACTGTG	c12p33908467ES	GGGATAAAGATGTGTATGGAAGTC
chr12	34236761	34236942	34345494	34345675	-	361	181	6	L1PA2	"COLO1T,COLO1N"	236	433	L1PA2				c12p34236851FS	TTTTAAAAACTGTGTTTCCTACCC	c12p34236851ES	TACTCTGCATATAACACAGAAGCC
chr12	36329876	36330180	38043609	38043913	-	57	304	5	L1PA3	"COLO1T,COLO1N"	248	295	"L1PA3,ALR/Alpha"				c12p36330028FS	GTTGAACCTATCTTTTGATTGAGC	c12p36330028ES	AGTCTCAAAGGCCTCTAAATATCC
chr12	36541589	36541904	38255322	38255637	-	72	315	9	L1PA2	"COLO1T,COLO1N"	197	295	"L1PB1,L1PA2"				c12p36541746FS	TTTCAAAAGTTATTGGGGTATAGG	c12p36541746ES	GATCCATTTGAGGTCTATTTTGAG
chr12	36866588	36866713	38580321	38580446	+	10	125	3	L1PA3	"COLO1T,COLO1N"	46	355	L1M1				c12p36866650FS	TTGTTGAAATCTATTTTTGTCTGG	c12p36866650ES	GGTAATTATGGTGTGCAAGATCAC
chr12	37485670	37485923	39199403	39199656	+	104853	253	40	L1HS	"COLO1T,COLO1N"	461420	252	"L1HS,L1PA3"		CPNE8		c12p37485796FS	AGCCTGTTATTGGTCTATTCAGAG	c12p37485796ES	CAAATGTCCAACAATGATAGACTG
chr12	37643316	37643571	39357049	39357304	-	10	255	3	L1PA3	"COLO1T,COLO1N"	44	128	L1PA3				c12p37643443FS	GACACGCATACTTACACATACCTC	c12p37643443ES	TCATCATTCTCAGTAAACTATCGC
chr12	38481350	38481730	40195083	40195463	+	7769	380	48	L1HS	"COLO1T,COLO1N"	32903	518	"AT_rich,(A)n,MIR3"		"C12orf40,SLC2A13"		c12p38481540FS	CTGCTTTCCTAATTAGTCTCCAAG	c12p38481540ES	TCATTCTCAGTAAACTATCGCAAG
chr12	40524006	40524416	42237739	42238149	-	1264	410	23	L1HS	"COLO1T,COLO1N"	1826	295	"L1HS,L2b,Tigger4b,(T)n"	LINE:dbRIP			c12p40524211FS	AGAGACAGTGGAATAAGGTACAGG	c12p40524211ES	TCATTCTCAGTAAACTATCGCAAG
chr12	41542826	41543185	43256559	43256918	-	1182	359	10	noL1	"COLO1T,COLO1N"	1473	443	AluJb	"LINE:dbRIP,Ewing"			c12p41543005FS	ATGGGTACAAGTAGCAAAAACTTC	c12p41543005ES	CTGCCCTCAGAGAAAAATTTATAG
chr12	42212140	42212667	43925873	43926400	-	4997	527	17	L1HS	"COLO1T,COLO1N"	7056	550	L1HS		ADAMTS20	ADAMTS20.36	c12p42212403FS	AGCAACATGTCATACATGCTAAAC	c12p42212403ES	TAATGCTAGATGACACGTTAGTGG
chr12	42265718	42265820	43979451	43979553	+	24	102	12	L1HS	"COLO1T,COLO1N"	74	105	"L1HS,(A)n,LTR52"	LINE:dbRIP			c12p42265769FS	ATAGGTAACTGGTTTCCATCAGAG	c12p42265769ES	GTTATGTACCCAGTAGCCCAGTAG
chr12	42787984	42788314	44501717	44502047	-	36287	330	45	L1HS	"COLO1T,COLO1N"	87076	339	L1HS		"DKFZp434K2435,TMEM117"		c12p42788149FS	ATCAGCCTCCAATTATGAATTTAC	c12p42788149ES	GATGAGTTCATATCCTTTGTAGGG
chr12	43256192	43256653	44969925	44970386	-	1785	461	15	L1PA3	"COLO1T,COLO1N"	3764	438	"L1PA3,L2b,(CAT)n"		"NELL2,hucep-12"		c12p43256422FS	AATGTTAATGACCTACAAGCCATC	c12p43256422ES	TCATTCTCAGTAAACTATCGCAAG
chr12	43545815	43546214	45259548	45259947	+	14	399	5	L1HS	"COLO1T,COLO1N"	572	479	"L1HS,L1M1,MLT1A1"		"NELL2,hucep-12"		c12p43546014FS	TTTATGTTTTGGTATGTTGTGTCC	c12p43546014ES	TCATTCTCAGTAAACTATCGCAAG
chr12	45655969	45656092	47369702	47369825	+	95	123	7	noL1	"COLO1T,COLO1N"	286	439	L1PA8				c12p45656030FS	ATTCATAGCCAAATTCTACCAGAG	c12p45656030ES	TTTGTAGTTCTCCTTGAAAAGGTC
chr12	47215291	47215620	48929024	48929353	+	2015	329	10	noL1	"COLO1T,COLO1N"	3608	327	"MER75,L1PA15"	LINE:Ewing			c12p47215455FS	TGAAGTAATTTACATTGCCATCAG	c12p47215455ES	TATAAGGAACTTAACCCTTTTCCC
chr12	47392590	47392691	49106323	49106424	+	54	101	4	noL1	"COLO1T,COLO1N"	127	101	"(A)n,AluSp"		CCNT1		c12p47392640FS	TTAATAAAACGCCAAGGTAATAGG	c12p47392640ES	AGTTACTCCCAATACTGTTTCTGC
chr12	47989519	47990115	49703252	49703848	-	699	596	11	L1PA4	"COLO1T,COLO1N"	5353	80	"L1M3,(CAAAA)n,AluSx,L1PA4,FLAM_A"				c12p47989817FS	TGAATCAATAATTTAAAACCTCCC	c12p47989817ES	AACACCGTATGTTCTCACTCATAG
chr12	48949928	48950319	50663661	50664052	+	60	391	4	noL1	"COLO1T,COLO1N"	373	392	AluSp		LIMA1		c12p48950123FS	ACTCCTGAACTCAAGCAATCTATC	c12p48950123ES	TTCTCTGCACCATAAAGTCTAAATC
chr12	50242425	50242726	51956158	51956459	-	3811	301	22	L1HS	"COLO1T,COLO1N"	21547	407	"L1PA3,L1HS"				c12p50242575FS	TACCAATTCCTCCTTATACCTCTG	c12p50242575ES	AAGAAAATGTGGCACTTATACACC
chr12	50398280	50398427	52112013	52112160	+	10	147	2	noL1	"COLO1T,COLO1N"	20	147	AluJo		SCN8A		c12p50398353FS	TCATTTCTGAAAATGTTCAATCAC	c12p50398353ES	GCATATGGCATGTATCTAACAATG
chr12	51466504	51466860	53180237	53180593	+	22	356	3	L1PA3	"COLO1T,COLO1N"	63	518	L1PA3				c12p51466682FS	GTAGCTGAGATTATAGGTGCAAGC	c12p51466682ES	TGGAAATCATCATTCTCAGTAAAC
chr12	51699482	51699791	53413215	53413524	-	16	309	4	noL1	"COLO1T,COLO1N"	20	310	"AT_rich,AluSx"		"EIF4B,eIF4B"		c12p51699636FS	CTAGAAATATAATTTAAGGCCGGG	c12p51699636ES	ATCCCCACTCTTATTTTCTTTACC
chr12	53474591	53475145	55188324	55188878	+	10499	554	36	L1HS	"COLO1T,COLO1N"	27184	417	"L1HS,MLT1A"				c12p53474868FS	CAATTACATTTTAGTTTCAGCGTG	c12p53474868ES	TTCTCAGTAAACTATCGCAAGAAC
chr12	53761200	53761435	55474933	55475168	-	72	235	6	L1PA3	"COLO1T,COLO1N"	163	349	L1PA3				c12p53761317FS	GATGAATCTGAGGGTTATTTTGAG	c12p53761317ES	TCATTCTCAGTAAACTATCGCAAG
chr12	53775820	53776352	55489553	55490085	-	1011	532	14	L1HS	"COLO1T,COLO1N"	3541	537	"L1HS,AT_rich,L1MC4"				c12p53776086FS	CCTTGTAATAAATTTGTCCAGGTC	c12p53776086ES	ACACCGCATATTCTCACTCATAG
chr12	53904450	53905005	55618183	55618738	-	12	555	4	L1PA3	"COLO1T,COLO1N"	51	691	"L1PA3,(TTTA)n,MLT1C"				c12p53904727FS	TGTTGATGTTCTCATCCTTGATAC	c12p53904727ES	CAAATGTCCAACAATGATAGACTG
chr12	55645053	55645451	57358786	57359184	+	21	398	9	L1HS	"COLO1T,COLO1N"	536	515	"SVA_D,L1HS,A-rich"				c12p55645252FS	TTTTCCAATTCTCTGAAGAAAGTC	c12p55645252ES	ATGATGAGTTCATGTCCTTTGTAG
chr12	58688283	58688795	60402016	60402528	-	1585	512	21	L1HS	"COLO1T,COLO1N"	3723	538	"L1HS,AT_rich"				c12p58688539FS	GAAAACAAGTGACAAACATAGCAG	c12p58688539ES	AAAAACCAAACACCTCATATTCTC
chr12	59530276	59530415	61244009	61244148	-	515	139	8	noL1	"COLO1T,COLO1N"	547	143	"MLT2B3,(TCTA)n"				c12p59530345FS	ACACCTTTCTTCTCCTACATCTTG	c12p59530345ES	ATTATAACAAAAACACCAGGGATG
chr12	59681494	59682666	61395227	61396399	-	510	1172	23	L1HS	"COLO1T,COLO1N"	10550	885	"L1HS,L1PA4"				c12p59682080FS	TTTTGTATAAGGTGTAAGGAAGGG	c12p59682080ES	AAGAGCTATCTATGACAAACCCAC
chr12	60052823	60053280	61766556	61767013	-	1162	457	16	L1HS	"COLO1T,COLO1N"	16298	472	"L1HS,AluSx"	LINE:dbRIP			c12p60053051FS	AGAACAGAGACATCTCACAGACAC	c12p60053051ES	TTTTTCTGCATCTCACTCATAGG
chr12	60533247	60533516	62246980	62247249	+	7070	269	15	noL1	"COLO1T,COLO1N"	1	65	L1MA9		"DKFZp761E1217,FAM19A2"		c12p60533381FS	ACCCTCTACTCTGTCTTGTGTTTC	c12p60533381ES	AAATACTGGTCAAAGGGTACAAAC
chr12	60581096	60581370	62294829	62295103	-	33	274	3	L1HS	"COLO1T,COLO1N"	94	488	L1HS	LINE:dbRIP	"DKFZp761E1217,FAM19A2"		c12p60581233FS	ATATCCATTTTTGGCCTTACTATG	c12p60581233ES	GCTTCTGGAGAAAATAAGTTTTTG
chr12	62881616	62881995	64595349	64595728	+	127	379	7	L1PA2	"COLO1T,COLO1N"	424	380	"(CAAA)n,L1PA2,AluSx,L2"		C12orf66		c12p62881805FS	GTTTTGTAGAGATGGAGTTTTTCC	c12p62881805ES	TCATTCTCAGTAAACTATCGCAAG
chr12	62967165	62967450	64680898	64681183	-	99	285	5	L1PA2	"COLO1T,COLO1N"	318	445	"(GAA)n,L1PA2,AluSz"	Alu:Hormozdiari	"C12orf56,BC042855"		c12p62967307FS	AGAAAGGAAAAAGAGGAAGAGAAG	c12p62967307ES	ATGATGAGTTTGTGTCCTTTGTAG
chr12	63652317	63652605	65366050	65366338	-	131	288	10	L1HS	"COLO1T,COLO1N"	126	369	L1HS		AK123272		c12p63652461FS	TTGAGAAACACAAATGAACAAATC	c12p63652461ES	TTAGTATTTCTGAGGAAGGACAGG
chr12	64737635	64737861	66451368	66451594	-	68	226	5	noL1	"COLO1T,COLO1N"	99	229	"AluSx1,(T)n"				c12p64737748FS	GCTCTGTTCAGGAAGGTATAAAAG	c12p64737748ES	TTTTAGGCTTATAAATGCAGATCC
chr12	65207736	65208100	66921469	66921833	+	2505	364	31	L1PA4	"COLO1T,COLO1N"	8118	402	L1PA15		GRIP1		c12p65207918FS	AATACAAAAACATTAGCCGGG	c12p65207918ES	AACACTGCATGTTCTCACTCATAG
chr12	65264445	65265146	66978178	66978879	-	13	701	5	L1PA3	"COLO1T,COLO1N"	24	621	"L2,L1PA3,AT_rich,AluSx"		GRIP1		c12p65264795FS	TAATGCTAGATGACGAGTTAGTGG	c12p65264795ES	TAATGCTAGATGACGAGTTAGTGG
chr12	65796817	65797119	67510550	67510852	-	39	302	6	L1PA2	"COLO1T,COLO1N"	88	421	"Arthur1,L1PA2"				c12p65796968FS	ATTTATCTCTTCTGAATGAGTGGC	c12p65796968ES	CAAATCTGTTCAACTGTAATCTGC
chr12	68283641	68283913	69997374	69997646	-	30	272	9	L1PA3	"COLO1T,COLO1N"	47	394	"L1PA3,L1PA17"				c12p68283777FS	CCATACCTTGCCTTCATATATTTC	c12p68283777ES	CAAATGTCCAACAATGATAGACTG
chr12	68452966	68453506	70166699	70167239	-	616155	540	116	L1HS	"COLO1T,COLO1N"	1223638	461	"L1HS,L1MA6"		RAB3IP		c12p68453236FS	ATTTGTCTGTTTACTGACTTGTGC	c12p68453236ES	ACACCGCATATTCTCACTCATAG
chr12	68540677	68541077	70254410	70254810	-	12	400	4	L1PA3	"COLO1T,COLO1N"	27	400	"L1PA3,L1ME1"				c12p68540877FS	TATCATTGATGGACATTTAGGTTG	c12p68540877ES	AACTAGAAATACCATTTGACCCAG
chr12	68867711	68868040	70581444	70581773	-	1043	329	15	L1PA3	"COLO1T,COLO1N"	5367	329	"L1PA3,MIR"				c12p68867875FS	AAAAGCACTGTTTTACAAAGGAAG	c12p68867875ES	TGTGACTTAACATGATCGTAGGAC
chr12	71146854	71147039	72860587	72860772	-	10	185	2	L1PA4	"COLO1T,COLO1N"	68	289	L2a		TRHDE		c12p71146946FS	GTTGCTACAAGTAAATGACACCAG	c12p71146946ES	AATAGGGAATTGAACAATGAGAAC
chr12	71589296	71589539	73303029	73303272	+	15	243	4	L1PA3	"COLO1T,COLO1N"	47	247	L1PA3				c12p71589417FS	AATAGACATAGAAAGCACAAAGGG	c12p71589417ES	ATTGTGTCCAACAATGATAGACTG
chr12	71873371	71873514	73587104	73587247	-	31	143	3	L1PA3	"COLO1T,COLO1N"	124	280					c12p71873442FS	AGAACATTTTTCACACTATGGTCC	c12p71873442ES	ACACTGCATATTCTCACTCATAGG
chr12	71963224	71963730	73676957	73677463	-	2626	506	25	L1HS	"COLO1T,COLO1N"	6293	517	"L1MA9,L1HS,T-rich"				c12p71963477FS	TATTTTTATTTGTGTAGCCTGAGC	c12p71963477ES	TAATGCTAGATGACACGTTAGTGG
chr12	72075341	72075581	73789074	73789314	+	329	240	2	noL1	"COLO1T,COLO1N"	142	65	L1PA2	LINE:Ewing			c12p72075461FS	AGAGTTTCCAGTTTTTCTGTTCTG	c12p72075461ES	ATCTCACTAGGGAGTGCCAGAC
chr12	72369025	72369372	74082758	74083105	+	10	347	3	L1PA4	"COLO1T,COLO1N"	26	350	"L1MA1,L1PA4"				c12p72369198FS	ATCCTTGCATAACAGGAATAAATC	c12p72369198ES	AGAAATGCAAAGGATAATTAATGG
chr12	73560896	73561366	75274629	75275099	+	856	470	36	L1HS	"COLO1T,COLO1N"	5095	469	"L1HS,L1MCa,(A)n"				c12p73561131FS	AAAAGATGTTGAACTTTTTCAAGTG	c12p73561131ES	TCATTCTCAGTAAACTATCGCAAG
chr12	77861804	77861996	79337673	79337865	-	203	192	6	noL1	"COLO1T,COLO1N"	120	105	AT_rich	"LINE:Ewing,Iskow,Stewart"	SYT1		c12p77861900FS	CAAACTATATCACCCATCTCACAG	c12p77861900ES	ATTAATGTCCTGAGGCTGAGTTAG
chr12	78094522	78095019	79570391	79570888	-	6298	497	43	L1HS	"COLO1T,COLO1N"	14984	499	"L1HS,L1MC4a"		SYT1		c12p78094770FS	AGCAAGAGATCTAATGTTACCCAG	c12p78094770ES	TCATTCTCAGTAAACTATCGCAAG
chr12	79495517	79495834	80971386	80971703	-	12	317	5	L1PA4	"COLO1T,COLO1N"	67	489	L4				c12p79495675FS	ACTCACTATCATGAGAACAGGATG	c12p79495675ES	GGAGGGATAGCATTAGGAGATATAC
chr12	81253056	81253211	82728925	82729080	+	173	155	5	noL1	COLO1T	0	0					c12p81253133FS	CTGTAGTCCTAGCTACTCAGGAGG	c12p81253133ES	TTAATTAAATACCAAGTCCCATCC
chr12	81412563	81412685	82888432	82888554	+	12	122	4	L1PA4	"COLO1T,COLO1N"	8	109	L1MA8				c12p81412624FS	AATTTCTGTAGGTGGTCTCTTCAC	c12p81412624ES	TAATGCTAAATGACGAGTTAATGG
chr12	81855615	81855881	83331484	83331750	-	12	266	8	noL1	"COLO1T,COLO1N"	29	267	"(TA)n,(TG)n,AluSx1"		TMTC2		c12p81855748FS	TCTGAAATAGTGGAGGTTTAGGAC	c12p81855748ES	CAATTGTATTCTGCAATCTCTGAC
chr12	82150888	82151218	83626757	83627087	-	14	330	2	L1PA4	"COLO1T,COLO1N"	44	380	L1PA7				c12p82151053FS	AATTTCAAGCCAGTGGATCTTAG	c12p82151053ES	AACCATCATTCTCAGCAAACTATC
chr12	82368681	82369088	83844550	83844957	+	73864	407	73	L1HS	"COLO1T,COLO1N"	280712	585	L1HS	LINE:dbRIP			c12p82368884FS	TAACATGTTTACTCTTCCCCTACC	c12p82368884ES	TCATTCTCAGTAAACTATCGCAAG
chr12	82594361	82594744	84070230	84070613	+	2752	383	36	L1HS	"COLO1T,COLO1N"	6634	418	"L1HS,(A)n,L2c"				c12p82594552FS	GAAACAAAACAAGTGAACAAACAC	c12p82594552ES	ATGATGAGTTCATGTCCTTTGTAG
chr12	83236482	83236773	84712351	84712642	+	35	291	3	noL1	COLO1T	0	0	L3				c12p83236627FS	GCCTTCATCATAAAATCTTTGTTC	c12p83236627ES	GTAAATTGTAGATTGCTTGAAGGG
chr12	83489231	83489600	84965100	84965469	+	55	369	8	noL1	"COLO1T,COLO1N"	839	227	LTR67B	"LINE:Ewing,Iskow,Stewart"			c12p83489415FS	AAAAGGAGACATAGCAGAAGTCAG	c12p83489415ES	ATGTACACACCAGTGACTTCAAAC
chr12	84030471	84030579	85506340	85506448	+	547	108	3	noL1	"COLO1T,COLO1N"	730	127		"LINE:Ewing,Stewart"	LRRIQ1		c12p84030525FS	ATATCCTTTCCCCAATAAATGAAG	c12p84030525ES	TCTTGCATAGTTTATCATCTCCTG
chr12	85130626	85130837	86606495	86606706	+	49	211	2	noL1	"COLO1T,COLO1N"	5	211	AluYa5		MGAT4C		c12p85130731FS	ATTAGGTCTCAGATTCACTTTTGG	c12p85130731ES	TAGTAATTTTCCATGAAGAGGAGG
chr12	85157906	85158160	86633775	86634029	+	110	254	6	L1HS	"COLO1T,COLO1N"	670	328	"(CA)n,L1HS,(TAAAA)n"		MGAT4C		c12p85158033FS	ATAAGAGCAGAATCTGAATTTTGG	c12p85158033ES	GATCTTATCCCTCTCTTCTCAGTG
chr12	85503815	85504141	86979684	86980010	-	51	326	2	noL1	"COLO1T,COLO1N"	151	514	L1PA3		MGAT4C		c12p85503978FS	TGAAGACTATCTCCATACTTTCCC	c12p85503978ES	AACTAGAAATACCATTTGACCCTG
chr12	86112191	86112483	87588060	87588352	+	16	292	6	L1PA2	"COLO1T,COLO1N"	36	304	"L1PA2,MLT1J2"				c12p86112337FS	AAGCCCACAATACTTTAAAATCAC	c12p86112337ES	TCATTCTCAGTAAACTATCGCAAG
chr12	86451875	86452262	87927744	87928131	+	33	387	4	noL1	"COLO1T,COLO1N"	20	388	L1PA5				c12p86452068FS	TTCTCTCTTTTTCTATTGATTGGG	c12p86452068ES	GATTAAGAAACTCACTCAAAACCG
chr12	86465898	86466450	87941767	87942319	+	10	552	5	L1PA3	"COLO1T,COLO1N"	87	977	"L1MA3,L1PA4"				c12p86466174FS	TTAAATATGTCATGCCACTCTGTC	c12p86466174ES	AAAATCAAGCAGAAATTCTAGAGC
chr12	86664578	86665522	88140447	88141391	-	288	944	14	L1HS	"COLO1T,COLO1N"	669	965	"L1HS,AT_rich"				c12p86665050FS	AAGAACTCATGTTCACATTTTTCC	c12p86665050ES	CATATGTAACTAACCTGCACAATG
chr12	87540741	87541133	89016610	89017002	+	20	392	4	L1PA2	"COLO1T,COLO1N"	11	412	"(CAAAAA)n,L1PA2,MSTA"				c12p87540937FS	ATCCAGGTAGTGTTCATATGTGTG	c12p87540937ES	TCATTCTCAGTAAACTATCGCAAG
chr12	88377275	88377535	89853144	89853404	+	11	260	3	L1PA4	"COLO1T,COLO1N"	53	263	L1PA4		"WDR51B,TUWD12"		c12p88377405FS	AAAGTGAAAACCTTTTATTTCTGG	c12p88377405ES	GGACAAATAACACAATAGGGAATC
chr12	89370603	89370719	90846472	90846588	+	106	116	8	noL1	"COLO1T,COLO1N"	202	604	"(A)n,AluYa5"	Alu:dbRIP			c12p89370661FS	TTGTAACATCTGTAATTGACCACC	c12p89370661ES	TTTTATTGAAGAAGAAACAGGCTC
chr12	89460492	89460615	90936361	90936484	+	64	123	10	L1PA2	"COLO1T,COLO1N"	695	226	"L1PA2,(A)n,L3"				c12p89460553FS	CAATGCAGAAAGCATGATAGTAAG	c12p89460553ES	CAAATGTCCAACAATGATAGACTG
chr12	90082229	90082643	91558098	91558512	+	26776	414	39	L1HS	"COLO1T,COLO1N"	40764	634	"L1HS,(A)n"		DCN	"DCN.1,DCN.5"	c12p90082436FS	AAGCAAAAATTTTACCCTACAATG	c12p90082436ES	CCTACCACTGCTAAAAAGGTAAAC
chr12	90203790	90204308	91679659	91680177	+	54	518	8	L1PA2	"COLO1T,COLO1N"	273	374	"(GAAA)n,L1M4c,L1ME3B,L1PA2"				c12p90204049FS	GGCACTGAAGTTTCCAAATATTAC	c12p90204049ES	TCATTCTCAGTAAACTATCGCAAG
chr12	90667567	90667702	92143436	92143571	-	60	135	11	L1PA4	"COLO1T,COLO1N"	778	117	"L1PA4,L1MC4a,(TC)n"				c12p90667634FS	TATGAAAATTTGAAGGGAAGAGAG	c12p90667634ES	TGATGACTGGATTAAGAAAATGTG
chr12	91237921	91238094	92713790	92713963	+	33	173	2	L1PA2	"COLO1T,COLO1N"	443	377	"L1PB1,L1PA2"				c12p91238007FS	TGGAAAAACCCTTCTAGACATTAG	c12p91238007ES	TCATTCTCAGTAAACTATCGCAAG
chr12	92178938	92179132	93654807	93655001	-	26	194	5	L1PA3	"COLO1T,COLO1N"	80	197	"L1PA3,MER31-int"				c12p92179035FS	GTGTGGAGAAGAGATTAGACCAAG	c12p92179035ES	CCTAAATTATGTGAACTTGCAATC
chr12	93551841	93552334	95027710	95028203	-	20	493	2	noL1	COLO1T	0	0	AluSx1		TMCC3		c12p93552087FS	TTCGCTGAATGAGTTACTAACAAG	c12p93552087ES	TCAACTATTGAGAAGTTTGACTCG
chr12	93620673	93620835	95096542	95096704	+	11	162	5	L1HS	"COLO1T,COLO1N"	46	169	L1HS				c12p93620754FS	TTCAAAAATCTTTCTTCCAAAGTC	c12p93620754ES	TTGTCTTGCTTTTGTGTATACTGC
chr12	95551945	95552550	97027814	97028419	-	14	605	4	noL1	"COLO1T,COLO1N"	48	349	"L1MD1,AluSg"		BC041426		c12p95552247FS	CCTTAATTTGCATTTCTCTAATGG	c12p95552247ES	AATTAGATATCCGCAGGTAAAAAC
chr12	95889393	95889597	97365262	97365466	-	97	204	4	noL1	"COLO1T,COLO1N"	1030	222		"LINE:Ewing,Iskow,Stewart"			c12p95889495FS	TTCAATAGACCAGGTAAGAAATGG	c12p95889495ES	TTTATAATAGGGAGTTGATGACCC
chr12	96033114	96033382	97508983	97509251	+	12	268	7	L1PA3	"COLO1T,COLO1N"	18	331	L1PA3				c12p96033248FS	CATATTTCAGATGCTGTCAATCTC	c12p96033248ES	TAGACTGGATTAAGAAAATGTGGC
chr12	96635350	96635886	98111219	98111755	-	34340	536	65	L1HS	"COLO1T,COLO1N"	156364	567	"AluJb,L1HS"		AK098641		c12p96635618FS	TGTTACTTAGCCTCTGGAAAACTC	c12p96635618ES	TAATGCTAGATGACACGTTAGTGG
chr12	96647754	96647939	98123623	98123808	+	94	185	11	L1PA3	"COLO1T,COLO1N"	310	255	L1PA3		AK098641		c12p96647846FS	CTTCCACTTGTTTGCTTATGTATG	c12p96647846ES	CAAATGTCCAACAATGATAGACTG
chr12	97197024	97197625	98672893	98673494	+	279170	601	93	L1HS	"COLO1T,COLO1N"	1160146	552	"L2a,L1HS,AluY"				c12p97197324FS	TACCATTCTCTAGGAACTCTGTCC	c12p97197324ES	ACACCGCATATTCTCACTCATAG
chr12	97376618	97376899	98852487	98852768	+	29	281	7	L1PA3	"COLO1T,COLO1N"	120	299	"L1PA3,AluSx"				c12p97376758FS	TTAAAATACAAAAATTAGCTGGGC	c12p97376758ES	ATGAAATTGGAAATCATCTTTCTC
chr12	100069915	100070318	101545784	101546187	+	418800	403	48	L1HS	"COLO1T,COLO1N"	2325397	405	"L1HS,L1PA2"				c12p100070116FS	AATTCTCTCTTTTGGTTGTGTCTC	c12p100070116ES	TCATTCTCAGTAAACTATCGCAAG
chr12	100680764	100681157	102156633	102157026	+	16	393	4	noL1	"COLO1T,COLO1N"	28	394	"L1ME4a,AluSx"		GNPTAB		c12p100680960FS	AGCATTTTAGGAAGTATCTTGTGC	c12p100680960ES	AAACATTGGAAATAACTAACCTGC
chr12	101366561	101367113	102842431	102842983	+	226445	552	45	L1HS	"COLO1T,COLO1N"	556951	679	"L1HS,L1PA7"		IGF1		c12p101366837FS	ATGTGTTCTCATTGTTCAACTCAC	c12p101366837ES	ACACCGCATATTCTGACTCATAG
chr12	102205575	102205698	103681445	103681568	+	12	123	3	L1PA4	"COLO1T,COLO1N"	40	80	L1PA4		C12orf42		c12p102205636FS	GGTTCTGTGATTCTGCCTAGTAAC	c12p102205636ES	CAAATGTCCAACAATGATAGACTG
chr12	107925153	107925379	109440768	109440989	+	27	226	5	L1PA2	"COLO1T,COLO1N"	81	607	"(TAAA)n,L1PA2,MER5A1"		SVOP		c12p107925266FS	TACTCCAAACTCAAGGTAGAGAGG	c12p107925266ES	ATGAAATTGGAAATCATCTTTCTC
chr12	113630329	113630885	115145946	115146502	+	14	556	4	noL1	"COLO1T,COLO1N"	25	73	"AluJo,(A)n,MIR3"				c12p113630607FS	GAACGAGACAAAAGAAAGAAAGAG	c12p113630607ES	AAATTGAGGCTTAGAAAGGTTAGG
chr12	116177290	116177512	117692907	117693129	+	10	222	5	L1PA3	"COLO1T,COLO1N"	12	440	"L1PA3,AT_rich,A-rich"		"NOS1,nNOSmu"		c12p116177401FS	AAGGGTAATAACAAAAAGGAAAGC	c12p116177401ES	CTAGAAAGTTCTTCTGGACAGTGC
chr12	116298436	116298862	117814053	117814479	-	112	426	10	noL1	"COLO1T,COLO1N"	466	422	LTR33	"LINE:Beck,Ewing,Iskow,Stewart"			c12p116298649FS	CATTTCTTATTTTCGTAGGCTCAG	c12p116298649ES	ACTTCTATCCTATTGCTACCTCCC
chr12	116671274	116671657	118186891	118187274	+	18571	383	29	noL1	"COLO1T,COLO1N"	58099	356	"LTR16C,MIR3"	"LINE:Ewing,Stewart"	KSR2		c12p116671465FS	GTCACATTCTTATTGAAACAGCAG	c12p116671465ES	ATATTTGAGAGGTGATCCTAGCAG
chr12	117068424	117068812	118584041	118584429	-	17	388	2	noL1	"COLO1T,COLO1N"	22	66	"AluSg,(T)n"				c12p117068618FS	GTTCTGATGTGTTATCCACAGAGG	c12p117068618ES	TTTTAGTAGGGATGGTGTTTTACC
chr12	123666298	123666496	125100345	125100543	+	11	198	2	noL1	"COLO1T,COLO1N"	4	65	"AluSq2,MER41A,AluY"				c12p123666397FS	AGTTTCAACTTCAGGGAGTTACC	c12p123666397ES	TAAGAAAGTAAAGGAATAGGCTGG
chr12	125348937	125349540	126782984	126783587	-	4157	603	25	L1HS	"COLO1T,COLO1N"	9705	755	"L1HS,MSTB1,MLT1F1,(T)n,MLT1F1-int"	LINE:dbRIP			c12p125349238FS	ATGTTATCATGAGGTCTCAGTTCC	c12p125349238ES	GAGGGATAGCATTGGGAGATATAC
chr12	125368221	125368915	126802268	126802962	-	66	694	9	noL1	"COLO1T,COLO1N"	389	553	Charlie8	"LINE:Beck,Ewing,Iskow,Stewart"			c12p125368568FS	AAAAATGGGATCCTTTTAAATCTC	c12p125368568ES	GCAAATCTATCCTTCCATAATCAC
chr12	126255479	126255683	127689526	127689730	-	26	204	3	noL1	"COLO1T,COLO1N"	28	70	AluSg				c12p126255581FS	TTCTGACTTTATACCATGTGAACG	c12p126255581ES	CACACAGAGCGTTCTTTTATTATG
chr12	128105966	128106341	129540013	129540388	-	98	375	6	L1PA4	"COLO1T,COLO1N"	325	455	MLT1N2				c12p128106153FS	CTGAGGTTGTGACACAGTTTTG	c12p128106153ES	AACAGTGCATGTTCTCACTCATAG
chr12	128797923	128798074	130231970	130232121	-	229	151	7	noL1	COLO1T	0	0	(CA)n		TMEM132D		c12p128797998FS	AATCGTTAAGAGGTCAATCAGTTC	c12p128797998ES	GAGTGCTAGAAAGAAGAACAAAGC
chr12	128955663	128955787	130389710	130389834	-	2183	124	6	noL1	"COLO1T,COLO1N"	15	65	HAL1b				c12p128955725FS	GAATCTCCAACTAAGACATTCCC	c12p128955725ES	AAATAGACTCAGACCCACTGTAGC
chr13	20412516	20412937	21514516	21514937	-	70	421	3	noL1	"COLO1T,COLO1N"	305	429	"L1ME4a,AluSc,MIR3"	"LINE:Ewing,Iskow"			c13p20412726FS	ACATTTACGAGTATTGTCCTCTCC	c13p20412726ES	ACACATTCAATACTATGATGACGG
chr13	21033503	21033895	22135503	22135895	-	146	392	13	L1PA3	"COLO1T,COLO1N"	215	393	"L1PA3,L1MCa"		EFHA1		c13p21033699FS	TGAGATGTTTCAGCTATCTTTTTG	c13p21033699ES	TCATTCTCAGTAAACTATCGCAAG
chr13	21387846	21388029	22489846	22490029	+	29	183	3	noL1	"COLO1T,COLO1N"	38	65	(TCCA)n	"LINE:Ewing,Iskow,Stewart"			c13p21387937FS	AAAAAGTTTTCTCAAGAAATGGAG	c13p21387937ES	CATCATGAAGATTAAATGAGATGG
chr13	23357820	23358079	24459820	24460079	+	14	259	5	noL1	"COLO1T,COLO1N"	26	442	"AT_rich,FLAM_C"		MIPEP		c13p23357949FS	TTAAAAATGTCTGAAACTGAGATCC	c13p23357949ES	AAAACAGGAAGATTGAGTAAGACC
chr13	26386094	26386470	27488094	27488470	+	40	376	9	noL1	"COLO1T,COLO1N"	24	386	MLT1A0	"LINE:Ewing,Iskow,Stewart"			c13p26386282FS	GTGTTAATCACAGACGCATTATTC	c13p26386282ES	GAAAGACTCTAGATAGCTCCGTTG
chr13	28195239	28195488	29297239	29297488	-	76	249	10	L1PA2	"COLO1T,COLO1N"	162	320					c13p28195363FS	TCATAAGTTAAAGGAGGCAGATTC	c13p28195363ES	CAAGACATTTACTTACCTTCTGGG
chr13	28886560	28887056	29988560	29989056	+	4067	496	14	L1HS	"COLO1T,COLO1N"	7438	494	"L1HS,AT_rich,L1MC4a"		KIAA0774		c13p28886808FS	TTCAGGAAGCCTATTAAACAACTC	c13p28886808ES	TCATTCTCAGTAAACTATCGCAAG
chr13	28920848	28920948	30022848	30022948	-	39	100	2	noL1	"COLO1T,COLO1N"	47	100	AluSz		KIAA0774		c13p28920898FS	TTGATGTGAATGAACCAATGATAC	c13p28920898ES	TGTACAATACCTGAGAAACTCTGC
chr13	30780433	30780919	31882433	31882919	+	3022	486	24	L1HS	"COLO1T,COLO1N"	7148	488	"L1HS,MER21-int"		"B3GALTL,Glc-T"		c13p30780676FS	TTAGACCGTGACACTACATACACC	c13p30780676ES	TCATTCTCAGTAAACTATCGCAAG
chr13	32339195	32339807	33441195	33441807	-	7013	612	21	L1HS	"COLO1T,COLO1N"	48005	696	MIRb				c13p32339501FS	TTCTAGAATTCTCTCTCACTTGCC	c13p32339501ES	TGGGAGATATACCTAATGCTAGATG
chr13	33462549	33462942	34564549	34564942	+	29	393	5	L1PA3	"COLO1T,COLO1N"	320	393	"L1PA3,L1M5"				c13p33462745FS	TTTCCCAAATAGAGTTACTTGTCC	c13p33462745ES	AACTAGAAATACCATTTGACCCAG
chr13	33952012	33952451	35054012	35054451	-	46891	439	28	L1HS	"COLO1T,COLO1N"	132581	506	L1HS				c13p33952231FS	TAATTGTTTGGATGTTCTGAGATG	c13p33952231ES	ACACCGCATATTCTCACTCATAG
chr13	34372942	34373266	35474942	35475266	-	53	324	5	L1PA3	"COLO1T,COLO1N"	117	393	"L2a,(TTTTA)n,L1PA3"				c13p34373104FS	AATAATGAAATGTGAGAGACTGGG	c13p34373104ES	CTCACTCATAGGTGGGAATTAAAC
chr13	34581799	34582253	35683799	35684253	-	1354	454	22	L1HS	"COLO1T,COLO1N"	3262	454	"L1HS,AT_rich,L1P"		NBEA		c13p34582026FS	GTGGAAAACATTTGAACATTTTAG	c13p34582026ES	CATATAGTTCGCTTTCACAATCTG
chr13	36933395	36933827	38035395	38035827	-	126	432	10	L1PA3	"COLO1T,COLO1N"	516	639	"L1PA3,L1MB2,(TTG)n,L1M5"				c13p36933611FS	TTTCTTCTTTGCATGACTGAATAG	c13p36933611ES	AACACAGCATGTTCTCACTCATAG
chr13	37465526	37465794	38567526	38567794	+	902	268	7	noL1	"COLO1T,COLO1N"	487	265					c13p37465660FS	TTTTGAATAGGCTAAAAGTTGGTC	c13p37465660ES	CACCTCTCATTCTACATATTGCAC
chr13	37543631	37543979	38645631	38645979	+	134	348	7	L1PA3	"COLO1T,COLO1N"	198	352	"(TAAAAA)n,L1PA3,L1MEg,AluSq"				c13p37543805FS	ATGACAGAAGAAATACGGAAAGTC	c13p37543805ES	AACACAGCATGTTCTCACTCATAG
chr13	37809499	37809603	38911499	38911603	-	32	104	6	noL1	"COLO1T,COLO1N"	259	71	L1MEc				c13p37809551FS	TGTGTAGAGGCATATTTCATTCTG	c13p37809551ES	TGACAGAGATAATAGAAATGGCAG
chr13	39270927	39271038	40372927	40373038	-	130	111	7	L1PA4	"COLO1T,COLO1N"	320	255	"AluSc8,L1PA4"				c13p39270982FS	AAAAATCAATGGTTTACCAAAATG	c13p39270982ES	ACTGTTCACAATAGCAAAGACTTG
chr13	39456914	39457136	40558914	40559136	+	46	222	7	noL1	"COLO1T,COLO1N"	44	333	"AluSz6,L1MC3"				c13p39457025FS	AGATAGACTTCCCATTTCAAACAG	c13p39457025ES	AACATGGAAAAATCCTGTCTCTAC
chr13	39458148	39458612	40560148	40560612	-	338	464	11	L1HS	"COLO1T,COLO1N"	3493	370	"L2a,L1HS"				c13p39458380FS	TGGAGAGAACAGTATAATAAGCCC	c13p39458380ES	TCATTCTCAGTAAACTATCGCAAG
chr13	39476159	39476535	40578159	40578535	-	66	376	4	L1PA3	"COLO1T,COLO1N"	174	379					c13p39476347FS	AAAAACATTTCAATTTTCAAGAGC	c13p39476347ES	AACACCACATGTTCTCACTCATAG
chr13	41669579	41669779	42771579	42771779	+	427	200	5	noL1	"COLO1T,COLO1N"	539	456	AluJb	LINE:Ewing	"DGKH,DGKH-1"		c13p41669679FS	TCAAATTTATTTCAACATGCTTTC	c13p41669679ES	GAAACCCCGTCTCTACTAAAAATAC
chr13	42030203	42030533	43132203	43132533	+	25	330	6	L1PA3	"COLO1T,COLO1N"	139	330	"L1PA3,AluSz"				c13p42030368FS	TACCCTGTTTACTCAAGTAGAGGC	c13p42030368ES	ACACTGCATATTCTCACTCATAGG
chr13	43438641	43438942	44540641	44540942	-	19	301	8	L1PA2	"COLO1T,COLO1N"	89	326	"L1PA2,(T)n,L1MC4"				c13p43438791FS	TCTCTGGCCATTAGTTCTTTTAAC	c13p43438791ES	ATGATGAGTTCATGTCCTTTGTAG
chr13	45170523	45170698	46272522	46272697	+	189	175	5	noL1	"COLO1T,COLO1N"	1030	250	LTR49-int				c13p45170610FS	TCAACTCTTACAACTTTTTACCCC	c13p45170610ES	GATGGCATTATCTCCAAAGTTATC
chr13	46933908	46934011	48035907	48036010	-	7992	103	7	noL1	"COLO1T,COLO1N"	26396	104	(T)n				c13p46933959FS	GTTACTCTCAGCTAAAACTCCTGG	c13p46933959ES	AAAACCTAAAGGGAAGTGTGTTC
chr13	47076600	47076701	48178599	48178700	+	15	101	2	L1PA2	"COLO1T,COLO1N"	26	101	"L1PA2,L1MA4"				c13p47076650FS	TTACAGGTAGTCACTGGATTTTTG	c13p47076650ES	ATGTTGCTATAAAGACACATGCAC
chr13	47164780	47165009	48266779	48267008	-	36	229	4	L1PA7	"COLO1T,COLO1N"	92	238	"(TTTG)n,L1PA3,MSTB"	LINE:Ewing			c13p47164894FS	ACATAGGAACAGAAAACCAAACAC	c13p47164894ES	AAATATTTTGCAGATGGGATTAAG
chr13	47552506	47552945	48654505	48654944	+	76	439	2	noL1	"COLO1T,COLO1N"	498	437	"T-rich,AluSx"		MED4		c13p47552725FS	TAACTTCTGAAGGTGCTGTGTTAC	c13p47552725ES	AAAAATAAGAAAATTAGTCAGGCG
chr13	47754566	47754679	48856565	48856678	+	4448	113	10	noL1	"COLO1T,COLO1N"	14720	300	Charlie1b	"LINE:dbRIP,Ewing,Stewart"			c13p47754622FS	CAAGAAGTGAGTACGAAGACATTG	c13p47754622ES	AGTTTTATCAGTGTTCTTTCCTGG
chr13	47943659	47944100	49045658	49046099	+	1820	441	18	L1HS	"COLO1T,COLO1N"	833	360	"L1HS,AT_rich"		RB1		c13p47943879FS	TAGCTAATCTGCCTCCTACTTCAC	c13p47943879ES	TCATTCTCAGTAAACTATCGCAAG
chr13	49574395	49574956	50676394	50676955	+	28	561	4	noL1	"COLO1T,COLO1N"	37	66	"AluJb,L1MEc"		"DLEU2,XTP6"		c13p49574675FS	TAAACTGAGACGTATTCCTTCCTC	c13p49574675ES	AGTCTCAAGTTAATGAGCTTCCAC
chr13	50028515	50028632	51130514	51130631	+	36	117	3	L1PA3	"COLO1T,COLO1N"	83	134	Tigger2		AJ412031		c13p50028573FS	GTAATGAGGCTTAAAGGTCCTATG	c13p50028573ES	TCATTCTCAGTAAACTATCGCAAG
chr13	51741687	51741834	52843686	52843833	-	27	147	4	L1PA2	"COLO1T,COLO1N"	106	319	"L1PA2,L1PA12"		DKFZp434F1622		c13p51741760FS	CAAAGATCAATAGGAGAAGCACTG	c13p51741760ES	CGTATGTTTATTGTGGCATTATTC
chr13	54115586	54115700	55217585	55217699	-	26	114	5	L1PA3	"COLO1T,COLO1N"	22	101					c13p54115643FS	ATTAACAATGTTTGCTTCCTCTTC	c13p54115643ES	GACTGAAAATAACTCCAGCACAG
chr13	54562024	54562166	55664023	55664165	-	11	142	4	noL1	COLO1T	0	0	"AluY,L1MEc"				c13p54562095FS	GAGTGGTGCTATCTCTACTCACTG	c13p54562095ES	GAAAAACTCTGAGAACAAGAAATG
chr13	56691026	56691515	57793025	57793514	-	2010	489	23	L1HS	"COLO1T,COLO1N"	6591	437	L1HS	LINE:dbRIP			c13p56691270FS	TTAAAAACTTTACGGAACTATGGC	c13p56691270ES	TCATTCTCAGTAAACTATCGCAAG
chr13	57256590	57256945	58358589	58358944	-	438	355	8	noL1	"COLO1T,COLO1N"	1336	72	L1PA10				c13p57256767FS	TCTATTCAGGGATTCAACTTCTTC	c13p57256767ES	ACATAGTTACAGAACTCTCCACCC
chr13	57454521	57454944	58556520	58556943	+	188	423	4	noL1	"COLO1T,COLO1N"	119	270		LINE:Stewart			c13p57454732FS	TTTCTTATCAGAATCCAAGTCTCC	c13p57454732ES	ATTGAACTTAATTTGGCTGATACC
chr13	57986333	57986960	59088332	59088959	+	21522	627	52	L1HS	"COLO1T,COLO1N"	76994	682	"L1PB1,L1HS"				c13p57986646FS	TACCTTCCCCACTTTATATTTTTG	c13p57986646ES	GAGGGATAGCATTGGGAGATATAC
chr13	58333299	58333642	59435298	59435641	-	703	343	16	L1PA4	"COLO1T,COLO1N"	1244	426	LTR1				c13p58333470FS	GAGAAGAATCAGATCACAAGTGG	c13p58333470ES	GAGAACACATAGACACAGGAAGTG
chr13	58498421	58498740	59600420	59600739	-	88	319	2	L1PA2	"COLO1T,COLO1N"	245	393	"L1PA2,AT_rich"				c13p58498580FS	AATATCAGAGGAGAAAGATGAACG	c13p58498580ES	TTTGTAGAGACATGGATGAAATTG
chr13	60118791	60119193	61220790	61221192	-	126455	402	27	noL1	"COLO1T,COLO1N"	444634	354		"LINE:dbRIP,Ewing,Stewart"			c13p60118992FS	TTCTGCACCTAGACTATAAATCCC	c13p60118992ES	TCCACAAATGAAAATGTATGATTC
chr13	60359859	60360329	61461858	61462328	-	11050	470	45	noL1	"COLO1T,COLO1N"	39578	405		"LINE:dbRIP,Ewing,Iskow,Stewart"			c13p60360094FS	GTGTGTGTGTGTGTGTACAATTTC	c13p60360094ES	TCCTTTCTGAGATTTCATAGAACC
chr13	60594851	60595170	61696850	61697169	-	21	319	7	L1HS	"COLO1T,COLO1N"	34	337	"L1HS,L1MB2"				c13p60595010FS	AGAAATTAACTGAGGAGGTGAAAG	c13p60595010ES	GTTGACAAATCAAACGTCATAGAG
chr13	60632486	60632957	61734485	61734956	+	32481	471	74	noL1	"COLO1T,COLO1N"	77553	797	LTR33	"LINE:Ewing,Iskow,Stewart"			c13p60632721FS	TTAAACCTTATGATGCAAAGACAG	c13p60632721ES	AAGAAAATGCAGAGGATTACAGTG
chr13	61098152	61098275	62200151	62200274	-	20	123	7	L1PA4	"COLO1T,COLO1N"	110	189	"L1PA4,L1PA6"				c13p61098213FS	AGCCTGTTATTGGTCTATTCAGAG	c13p61098213ES	ATGAAGGCAGAAATAAAGATGTTC
chr13	61475261	61475366	62577260	62577365	-	13	105	7	noL1	"COLO1T,COLO1N"	56	104	(T)n				c13p61475313FS	TATACACACAGAACCAAATCGAAG	c13p61475313ES	CATATTGTATGCTTGCATCTTAGC
chr13	62586782	62587190	63688781	63689189	-	284	408	6	noL1	"COLO1T,COLO1N"	311	286		"LINE:Ewing,Iskow,Stewart"			c13p62586986FS	TGTCATTTGCTATCTATTCAACTACC	c13p62586986ES	ACTGTGAAAAGGTCTCAGAAAATC
chr13	62670219	62670508	63772218	63772507	+	20	289	3	L1PA4	"COLO1T,COLO1N"	30	363	L1PA4				c13p62670363FS	AATTTGCATTCCTAATGTGAAAAC	c13p62670363ES	AACCATCATTCTCAGCAAACTATC
chr13	64446774	64447139	65548773	65549138	-	1171	365	11	noL1	"COLO1T,COLO1N"	1087	371	L1PA16	LINE:Ewing			c13p64446956FS	TCTGTTTAGGGTTTCAGTTTTCTC	c13p64446956ES	AACCAATTGGACCTAATAGACATC
chr13	65725775	65725934	66827774	66827933	-	10	159	2	L1PA3	"COLO1T,COLO1N"	19	288	"L1PA3,MIRb"				c13p65725854FS	ATAAAATGCTTGAAATAGCACCTC	c13p65725854ES	TCATTCTCAGTAAACTATCGCAAG
chr13	66343579	66343864	67445578	67445863	+	38	285	6	L1PA3	"COLO1T,COLO1N"	136	419			PCDH9		c13p66343721FS	AGAGGAAATGTGTAAAAGGAATTG	c13p66343721ES	TCATTCTCAGTAAACTATCGCAAG
chr13	71866806	71867053	72968805	72969052	+	1087	247	6	L1PA13	"COLO1T,COLO1N"	1845	294	L1ME4a	"LINE:dbRIP,Ewing,Iskow"			c13p71866929FS	TACAGAAGAACAATACACACTGGG	c13p71866929ES	GAGTAAATTTTAAGTGTTCTCGCC
chr13	74594949	74595487	75696948	75697486	+	1935	538	27	L1HS	"COLO1T,COLO1N"	4364	497	"L1HS,ERV3-16A3_I-int"				c13p74595218FS	AGGATTTATGGAAGTCTACAGAGC	c13p74595218ES	AAGTGACACAGCTGTTACTGAGAG
chr13	76084448	76085008	77186447	77187007	-	35801	560	35	L1HS	"COLO1T,COLO1N"	103115	560	"HAL1,L1HS,AluSx1"				c13p76084728FS	AAATAAGGGATTGATTGAAAATTG	c13p76084728ES	TAATGCTAGATGACACGTTAGTGG
chr13	77551689	77552055	78653688	78654054	-	18	366	4	L1PA4	"COLO1T,COLO1N"	4	366	"L1MA8,L1PA4"		"BX647243,AK095779"		c13p77551872FS	AGTATTTCTTTGATTTTGAGGCTG	c13p77551872ES	CACAGAGTGAAGAGACAACCTATG
chr13	78157597	78157705	79259596	79259704	-	15	108	2	noL1	"COLO1T,COLO1N"	76	208		"LINE:dbRIP,Ewing,Iskow,Stewart"			c13p78157651FS	TCTAGATGTTGAGCTTTCACTCAG	c13p78157651ES	TTCCTTAAATTCCTTTCATCTCTG
chr13	78395900	78396000	79497899	79497999	-	14	100	2	L1PA3	"COLO1T,COLO1N"	9	295	L1PA3				c13p78395950FS	TGCCAATAAACTATGAGCATACAC	c13p78395950ES	CAAATGTCCAACAATGATAGACTG
chr13	80362609	80363286	81464608	81465285	-	23	677	5	noL1	"COLO1T,COLO1N"	90	677	"L1MB1,L1M7"				c13p80362947FS	ATACATTTTGTTTTATTGTCTGCG	c13p80362947ES	GGCTGTACCATTTTTCATTTCTAC
chr13	81426773	81426880	82528772	82528879	+	788	107	4	noL1	COLO1T	0	0	MLT1B				c13p81426826FS	ATAATAATCTTCATTCCATCACGG	c13p81426826ES	ATTCATCAAAAACTAGAAGCAACC
chr13	83438455	83438936	84540454	84540935	+	6620	481	39	L1HS	"COLO1T,COLO1N"	20347	480	L1HS				c13p83438695FS	AAACATTTTTGGTTCATCATTTG	c13p83438695ES	TCATTCTCAGTAAACTATCGCAAG
chr13	84769304	84769611	85871303	85871610	-	20031	307	19	noL1	"COLO1T,COLO1N"	55636	250		"LINE:Ewing,Stewart"			c13p84769457FS	TTCACAAGCTTTAAAACAAAGAAC	c13p84769457ES	GCAATTATACAATGATGGAAACAC
chr13	85045095	85045395	86147094	86147394	+	30	300	3	L1PA3	"COLO1T,COLO1N"	25	538	"L2,L1PA3,(GA)n"				c13p85045245FS	TCGTTTTCTAGAGACTTGTAACCC	c13p85045245ES	TCATTCTCAGTAAACTATCGCAAG
chr13	85237724	85238021	86339723	86340020	-	145	297	4	noL1	"COLO1T,COLO1N"	484	601		"LINE:dbRIP,Ewing,Iskow,Stewart"			c13p85237872FS	AGGCTTGTTTGACTTTATTTTGTC	c13p85237872ES	AATCACGAGATCAAAGAAGCTAAG
chr13	85400024	85400340	86502023	86502339	+	109001	316	54	L1HS	"COLO1T,COLO1N"	361176	318	"L1HS,(A)n"				c13p85400182FS	TAAAACATTTATATCTGTTGGGGG	c13p85400182ES	TAGACTGGATTAAGAAAATGTGGC
chr13	85719425	85719808	86921424	86921807	-	186	383	5	noL1	"COLO1T,COLO1N"	835	456	"LTR18B,MER57B2"	"LINE:dbRIP,Ewing"			c13p85719616FS	TAAGGTATGTGTAAGGTACATGGG	c13p85719616ES	AGAGTGTCTATGAACAGGAAAAGG
chr13	86340775	86341294	87542774	87543293	-	321541	519	33	L1HS	"COLO1T,COLO1N"	1089572	643	"L1HS,AluSx1,MLT1A0"				c13p86341034FS	TTGAAAGTTTTATGAGTAAGTGCG	c13p86341034ES	TCATTCTCAGTAAACTATCGCAAG
chr13	86937833	86938414	88139832	88140413	-	18	581	3	noL1	"COLO1T,COLO1N"	20	583	"(TA)n,(TG)n,(A)n"		AF339814		c13p86938123FS	CATGTGATATCTGTTTTTACCAGG	c13p86938123ES	AGCAAATCATATCTTGAACATTCC
chr13	87648607	87649262	88850606	88851261	-	64727	655	67	L1HS	"COLO1T,COLO1N"	192701	630	"L1HS,AT_rich,L1MEc"	LINE:dbRIP			c13p87648934FS	GCTAAGGCAATACTAAGCAAAAAG	c13p87648934ES	TGGGAGATATACCTAATGCTAGATG
chr13	90424186	90424719	91626185	91626718	+	1601	533	9	noL1	"COLO1T,COLO1N"	5909	533		"LINE:dbRIP,Ewing,Iskow,Stewart"			c13p90424452FS	AACATCATGCTTGTCAAAGAGTAG	c13p90424452ES	AAAACTGATCTGGTTAGAGCAAAG
chr13	91653936	91654237	92855935	92856236	+	10078	301	29	L1HS	"COLO1T,COLO1N"	29623	587	L1MEg		GPC5		c13p91654086FS	TATTCCTGAATTTCCTTGTCTCTC	c13p91654086ES	AAAAACCAAACACCACATATTCTC
chr13	91825067	91825183	93027066	93027182	+	29	116	6	L1PA2	"COLO1T,COLO1N"	96	297	"L1PA2,AT_rich"		GPC5		c13p91825125FS	ATATCAAGTGACCAAGACACACAC	c13p91825125ES	CTTCCTCCTGGATAAAAAGTACAC
chr13	91894922	91895587	93096921	93097586	-	5428	665	30	L1PA3	"COLO1T,COLO1N"	9789	333	"L1PA3,CT-rich,(A)n"		GPC5		c13p91895254FS	ACAAACCAAGTGGTAATACAAACC	c13p91895254ES	AATGCTAAATGACAAGTTAATGGG
chr13	92135347	92135862	93337346	93337861	-	15397	515	34	L1HS	"COLO1T,COLO1N"	49585	481	"L1HS,AluSx1"		GPC5		c13p92135604FS	CATTGTTTTACCAGCACTCAGTAG	c13p92135604ES	TCATTCTCAGTAAACTATCGCAAG
chr13	95175908	95176282	96377907	96378281	-	22	374	4	L1PA4	"COLO1T,COLO1N"	64	357	L1PA4		DNAJC3		c13p95176095FS	AATCCTGAATTACTATTTGATGGC	c13p95176095ES	ACTAGAAATACCATTTGACCCAAC
chr13	97117229	97117705	98319228	98319704	-	45224	476	66	L1HS	"COLO1T,COLO1N"	90677	536	"L1HS,AT_rich,MER63D"				c13p97117467FS	TGGTGTAGATACTACATGACAGCC	c13p97117467ES	TCATTCTCAGTAAACTATCGCAAG
chr13	98317876	98318230	99519875	99520229	+	99	354	5	noL1	"COLO1T,COLO1N"	152	439			"DOCK9,KIAA1058"	"KIAA1058.20,DOCK9.27,DOCK9.19,DOCK9.4"	c13p98318053FS	TATCAGTTATGGGACAAAGATGTG	c13p98318053ES	TAAATGTCTCTGTTTGTGAAAAGG
chr13	99167644	99168147	100369643	100370146	+	10	503	5	noL1	"COLO1T,COLO1N"	63	76	"AluJb,AluSx,L1MEe"		CLYBL		c13p99167895FS	ACCCTGTCTCTACAAAACAAAAAC	c13p99167895ES	AAACCCCGTCTCTACTAAAAATTC
chr13	102997883	102998154	104199882	104200153	-	13	271	3	L1PA4	"COLO1T,COLO1N"	23	284	"L1PA3,AT_rich,L1PA4"				c13p102998018FS	CCTTGATTTTAGTTCTGCAAGG	c13p102998018ES	AATTGCACTAAAGGCAGAAATAAG
chr13	103093966	103094186	104295965	104296185	-	24	220	3	noL1	"COLO1T,COLO1N"	163	331	L1MA4A	"LINE:dbRIP,Ewing,Iskow"			c13p103094076FS	ACGTGAGAACATGTGTTATTTGTC	c13p103094076ES	ACAAATGGGTTAAAGACTTAGACG
chr13	103502125	103502502	104704124	104704501	+	7774	377	31	L1HS	"COLO1T,COLO1N"	11037	378	L1HS				c13p103502313FS	ACTAGGGTTAATACCTGGATGATG	c13p103502313ES	GATGAGTTCATATCCTTTGTAGGG
chr13	104751668	104752106	105953667	105954105	+	36	438	7	L1PA2	"COLO1T,COLO1N"	103	451	"L1PA2,MIRc"				c13p104751887FS	GGTAAGTCTTGATGAAGTACCTGG	c13p104751887ES	ACACTGCATATTCTCACTCATAGG
chr13	104838769	104838945	106040768	106040944	+	45	176	5	L1PA3	"COLO1T,COLO1N"	327	259	AT_rich				c13p104838857FS	GGCCTTAGTTCAAAAGCACTATAC	c13p104838857ES	TGGAAATCATCATTCTCAGTAAAC
chr13	106234041	106234227	107436040	107436226	-	50	186	3	noL1	"COLO1T,COLO1N"	140	189	L1PA3				c13p106234134FS	TCTTTGTGGTTTTATCTACTTTTGG	c13p106234134ES	CTAGTCAAAGAAAGGGGTGACAG
chr13	107917188	107917319	109119187	109119318	-	19	131	4	L1PA6	"COLO1T,COLO1N"	20	80	L1PA6				c13p107917253FS	GTAGATAAGATTGGCTCAAAATCG	c13p107917253ES	AATGTCAGTCTCTCCACCTCTTAC
chr13	107960645	107960879	109162644	109162878	-	70	234	9	L1HS	"COLO1T,COLO1N"	136	630	"L1HS,AT_rich,AluY"				c13p107960762FS	CAGAAGTTGAGTACGTTGAGTGAG	c13p107960762ES	CAAATGTCCAACAATGATAGACTG
chr14	18070721	18071518	19000721	19001518	+	10	797	7	noL1	"COLO1T,COLO1N"	28	780	ALR/Alpha	Alu:Hormozdiari			c14p18071119FS	TAGTATCTGGAAAAGGACATTTGG	c14p18071119ES	AAAGGAAAGGTTTAACTCTGTGAG
chr14	18119999	18120307	19049999	19050307	+	223	308	4	noL1	"COLO1T,COLO1N"	1200	528	L1PA3				c14p18120153FS	TTAGGAATATCTCCCAATGCTATC	c14p18120153ES	GTTCTTCCATTTGTTTGTATCCTC
chr14	18129497	18130350	19059497	19060350	-	234144	853	76	L1HS	"COLO1T,COLO1N"	969791	1019	"AluSg4,L1HS,AluSp"				c14p18129923FS	TTTTTAGTAGAGATGGGGTTTCAC	c14p18129923ES	CATATGTAACTAACCTGCACAATG
chr14	19257906	19258086	20188066	20188246	-	577	180	9	L1HS	"COLO1T,COLO1N"	1272	371	"L1MA9,L1HS"				c14p19257996FS	TTACCATTCCACTACTCCTCTCTC	c14p19257996ES	GATGAGTTCATATCCTTTGTAGGG
chr14	19274611	19275120	20204771	20205280	-	26	509	7	L1HS	"COLO1T,COLO1N"	65	511	"L1M2,T-rich,L1HS"				c14p19274865FS	CCATATGGTTTTTCATAATGACTG	c14p19274865ES	TCATTCTCAGTAAACTATCGCAAG
chr14	19624113	19624376	20554273	20554536	-	33824	263	16	L1HS	"COLO1T,COLO1N"	58581	510	L1HS	LINE:dbRIP			c14p19624244FS	TATGTTGATTAGCTTGATTTAGCC	c14p19624244ES	GCCCTTTCTTTAGTTATGATTTTG
chr14	21670860	21671197	22601020	22601357	-	123	337	9	L1PA2	"COLO1T,COLO1N"	260	337	"L1PA2,L2"		"AV2S1A1,TCRA,TRD,TCR-alpha,AV30S1,TCRAV8.1a"		c14p21671028FS	CTTCTCCTCAAAGACCTAACAGAG	c14p21671028ES	AAGAATGTTCTGTAGGAGGACAAG
chr14	22483963	22484109	23414123	23414269	+	121	146	3	noL1	"COLO1T,COLO1N"	84	72	AluSg				c14p22484036FS	TAATTAGCAAGCGTGATGGTATG	c14p22484036ES	ATAGCTCACTGTAACCTCAACCTC
chr14	23652377	23653142	24582537	24583302	+	21311	765	55	L1HS	"COLO1T,COLO1N"	179938	890	"MER45A,L1HS"		NRL		c14p23652759FS	ATTTGCAGACCTTCGCTAGTC	c14p23652759ES	TAATGCTAGATGACACGTTAGTGG
chr14	26544440	26544567	27474600	27474727	-	10	127	2	noL1	"COLO1T,COLO1N"	6	71					c14p26544503FS	AAATTGTCTTCCACAAAACTGTTC	c14p26544503ES	AGCATTACATTAGGCTCTGAAATC
chr14	27871503	27871641	28801752	28801890	+	146	138	6	L1PA3	"COLO1T,COLO1N"	493	159	L1PA3				c14p27871572FS	AAAGGACAGATTCAATTTTCAAAG	c14p27871572ES	CAAATGTCCAACAATGATAGACTG
chr14	27940925	27941240	28871174	28871489	-	632	315	26	L1HS	"COLO1T,COLO1N"	2557	316	"L1HS,AT_rich,MER20"				c14p27941082FS	CAAAGTTTTAGCACAACATTTCAG	c14p27941082ES	ATGATGAGTTCATGTCCTTTGTAG
chr14	28797659	28797921	29727908	29728170	-	28479	262	39	L1HS	"COLO1T,COLO1N"	87124	387	"L1MC3,L1HS,(TTTTTA)n"	LINE:dbRIP			c14p28797790FS	CATGTCTTTCTCACATTTCAAAAC	c14p28797790ES	GAACTAGTTTACAGTCCCACCAAC
chr14	29503839	29503992	30434088	30434241	+	16	153	2	noL1	COLO1T	0	0					c14p29503915FS	GATAATGAACAAAGAAAATCTGCC	c14p29503915ES	AAAAATCAATTTCCTTCTCATCTG
chr14	30220104	30220397	31150353	31150646	-	53	293	4	noL1	"COLO1T,COLO1N"	148	183	AluSz6	"LINE:Ewing,Stewart"	"SCFD1,KIAA0917"		c14p30220250FS	TCTTCTGCCTATTTTGGATTTAAC	c14p30220250ES	AGCAATGTCTTTTGTAATGTGATG
chr14	30223350	30223814	31153599	31154063	-	5249	464	23	L1HS	"COLO1T,COLO1N"	9486	470	"L1HS,(T)n"		"SCFD1,KIAA0917"		c14p30223582FS	AGAGACAAGTCTATGTTACCCAGG	c14p30223582ES	TCATTCTCAGTAAACTATCGCAAG
chr14	31141351	31141583	32071600	32071832	+	167	232	5	L1PA3	"COLO1T,COLO1N"	575	76	"MIR,L1PA3,AT_rich,U3"		NUBPL		c14p31141467FS	TAGGGAAAGAAAATAATGTTTTGG	c14p31141467ES	TGATGAGTTCATGTTCTTTGTAGG
chr14	31678849	31679129	32609098	32609378	-	242	280	15	L1PA2	"COLO1T,COLO1N"	688	282	"L1PA2,L1MB5"		ARHGAP5		c14p31678989FS	ATCTTTTCAGAGAACCAACTTTTG	c14p31678989ES	CTCAGCCTCCAGAGTAGTTAGGAC
chr14	32119273	32119517	33049522	33049766	-	7308	244	29	L1PA3	"COLO1T,COLO1N"	26338	287	"L1P1,L1MA10,L1PA3"		AKAP6		c14p32119395FS	CATTAAATCAACAGATATGCAAGC	c14p32119395ES	TCATTCTCAGTAAACTATCGCAAG
chr14	33725795	33725971	34656044	34656220	+	10	176	5	L1PA3	"COLO1T,COLO1N"	63	389					c14p33725883FS	ACTTGTTTATGGTTCTCAGTTGTG	c14p33725883ES	AATGCTAAATGACAAGTTAATGGG
chr14	34600475	34601067	35530724	35531316	+	188	592	20	L1PA3	"COLO1T,COLO1N"	1372	629	"T-rich,L1PA3,L1M4b"		FAM177A1		c14p34600771FS	AGAATAAACATTTAAAGCACCTGG	c14p34600771ES	ATAACACCTTCACTTTAGGAGCTG
chr14	34795204	34795337	35725453	35725586	-	46	133	2	noL1	"COLO1T,COLO1N"	97	137	"AluSg,L1MC5"		KIAA0391		c14p34795270FS	ATACCAGGCAATTTCAATGTATG	c14p34795270ES	TCATTTCACCTGTAAATATGTTGG
chr14	35744546	35744888	36674795	36675137	+	6496	342	32	noL1	"COLO1T,COLO1N"	23480	454		"LINE:dbRIP,Ewing,Iskow,Stewart"			c14p35744717FS	TACCTACTATCCTTTCCAGCAAAC	c14p35744717ES	TATAGACAAGACTTTGGCTGATTG
chr14	36838356	36839380	37768605	37769629	-	2412	1024	16	noL1	"COLO1T,COLO1N"	3963	434	"L1MC3,L1PA4"		MIPOL1		c14p36838868FS	CATTTGGTTAAGTTGCATATTCTG	c14p36838868ES	ATGGCTGAATAAATGAATAAATGG
chr14	37097210	37097772	38027459	38028021	-	26	562	5	L1PA3	"COLO1T,COLO1N"	107	590	"L1MEd,L1PA3"				c14p37097491FS	GCATTTGATCATTTTTAGAGTTCC	c14p37097491ES	CAGTTTTCATCTTGAAAGTGTTTG
chr14	38835117	38835650	39765366	39765899	-	7770	533	53	L1HS	"COLO1T,COLO1N"	32295	1146	"HAL1,L1HS,(T)n,AluSc"		CTAGE5		c14p38835383FS	GTGTGTTCTGTTCTGTGTCCTAAG	c14p38835383ES	AGACACCTATAATCCCAGCTACTC
chr14	38944852	38944993	39875101	39875242	+	301	141	5	noL1	"COLO1T,COLO1N"	1075	117		"LINE:Ewing,Iskow"	FBXO33		c14p38944922FS	TATAGTTGTTTACAGAGGGAAGGC	c14p38944922ES	GAACCTGAGGTGCTTTTAAGATAG
chr14	39542521	39542623	40472770	40472872	-	10	102	5	noL1	"COLO1T,COLO1N"	41	106	"L2c,CT-rich"				c14p39542572FS	TTATGACTCTTTAGTATGGGAGGC	c14p39542572ES	AGTATAAAATCATTAGCACCCCAC
chr14	40267132	40267713	41197382	41197963	-	20350	581	48	L1HS	"COLO1T,COLO1N"	59074	583	"L1MA2,L1HS"				c14p40267422FS	TGTATTTTAACTTTCTCTCCCTGC	c14p40267422ES	ACACCGCATATTCTCACTCATAG
chr14	41743625	41743830	42673875	42674080	-	183	205	11	L1PA4	"COLO1T,COLO1N"	3020	297	"T-rich,(TTTG)n,AluJb"				c14p41743727FS	CTAAATGCCAATAGTTTAAAACCC	c14p41743727ES	TCATTCTCAGCAAACTATCACAAG
chr14	42796804	42796935	43727054	43727185	+	183	131	5	L1PA3	"COLO1T,COLO1N"	2634	131	L1PA3				c14p42796869FS	AATTCCTAAAGGAACATATGCAAG	c14p42796869ES	CAAATGTCCAACAATGATAGACTG
chr14	42915255	42915387	43845505	43845637	+	11	132	2	L1PA2	"COLO1T,COLO1N"	71	230	L1MA9				c14p42915321FS	TTTTAGGTGTACAATGTGATGCTC	c14p42915321ES	ACAGACTGGATTAAGAAAATGTGG
chr14	43468961	43469123	44399211	44399373	-	3347	162	9	noL1	"COLO1T,COLO1N"	2	65	L1MC1				c14p43469042FS	GAAAAGAAACGATAGGAACAGAAG	c14p43469042ES	CAGACGTCATGAGAACTCACTATC
chr14	44243505	44244082	45173755	45174332	-	4019	577	37	L1HS	"COLO1T,COLO1N"	18820	577	"AluJr,L1HS,(T)n"	LINE:dbRIP			c14p44243793FS	TGCTTGAAGCTAGGAACTTAAGAC	c14p44243793ES	TAATGCTAGATGACACGTTAGTGG
chr14	45015683	45016132	45945933	45946382	-	10714	449	18	L1HS	"COLO1T,COLO1N"	24989	600	"L1HS,L1PA5"				c14p45015907FS	CAACACTATGTTGAATAGGAGTGG	c14p45015907ES	TCATTCTCAGTAAACTATCGCAAG
chr14	45135395	45135956	46065645	46066206	-	12	561	4	L1PA4	"COLO1T,COLO1N"	32	581	"L1PA4,MIRb"				c14p45135675FS	ATTTATTGAATGCCTATTAGGTGC	c14p45135675ES	AACTAGAAATACCATTTGACCCAG
chr14	45382711	45383399	46312961	46313649	-	909	688	30	L1HS	"COLO1T,COLO1N"	1350	527	"L1HS,(TTTTTA)n,L1M5"				c14p45383055FS	GTATGGAGTGGATATGAGAATTGG	c14p45383055ES	TAATGCTAGATGACACGTTAGTGG
chr14	45529901	45530023	46460151	46460273	-	1366	122	8	L1PA2	"COLO1T,COLO1N"	6097	169	L1PA2				c14p45529962FS	TCAATCAAGCTAGGAAGAATAAGG	c14p45529962ES	CAAATGTCCAACAATGATAGACTG
chr14	46265109	46265474	47195359	47195724	-	20472	365	31	L1HS	"COLO1T,COLO1N"	71134	428	L1HS	LINE:dbRIP			c14p46265291FS	CAAAGCATCAATAAAAATCAATTTAC	c14p46265291ES	CCATCTTTCTCAGTAAACTATCGC
chr14	47732007	47732661	48662257	48662911	+	1508	654	22	L1HS	"COLO1T,COLO1N"	8680	654	"L1HS,(A)n"				c14p47732334FS	ACATATCTGGTTTGGATGAGATG	c14p47732334ES	TGGGAGATATACCTAATGCTAGATG
chr14	47854402	47854845	48784652	48785095	+	30	443	3	L1PA2	"COLO1T,COLO1N"	55	443	L1PA2				c14p47854623FS	AAAAGTGACTGGTATCTTGGTCTC	c14p47854623ES	TCATTCTCAGTAAACTATCGCAAG
chr14	47878408	47878645	48808658	48808895	+	13	237	3	L1PA3	"COLO1T,COLO1N"	45	362	"L1PA3,L1PA13"				c14p47878526FS	TGACAAAACAGACTTTAAACCAAC	c14p47878526ES	TCATTCTCAGTAAACTATCGCAAG
chr14	50487305	50487581	51417555	51417831	+	210	276	3	L1PA3	"COLO1T,COLO1N"	840	277	"L1PA3,(GAAAA)n"				c14p50487443FS	TTTTTAGTAGAGATGGGGTTTCAC	c14p50487443ES	GATGAGTTCATATCCTTTGTAGGG
chr14	50586315	50586495	51516565	51516745	+	22	180	2	noL1	"COLO1T,COLO1N"	70	211	"L2c,AluSg7"		TRIM9		c14p50586405FS	ACTCACTACCACGAGAACAGTATG	c14p50586405ES	GAATGACCTTCAGAAAGAGTTACC
chr14	50589618	50590109	51519868	51520359	-	119	491	17	L1HS	"COLO1T,COLO1N"	62	512	"AluJb,L1HS,T-rich"	LINE:dbRIP	TRIM9		c14p50589863FS	CTGTAGTCCTAGCTACTCCAGAGG	c14p50589863ES	ACTTTGGGCAATAATTTGTAATTC
chr14	51601508	51602009	52531758	52532259	-	14639	501	30	L1HS	"COLO1T,COLO1N"	29335	555	L1HS		NID2		c14p51601758FS	TCTCAATATCCATTCTTTTTAGCC	c14p51601758ES	TAATGCTAGATGACACGTTAGTGG
chr14	52570200	52570303	53500450	53500553	+	35	103	3	L1PA3	"COLO1T,COLO1N"	215	441	L1PA3				c14p52570251FS	AGCATAGCAAGACCTCCTCTTTAC	c14p52570251ES	AATATTTACCAAAGCAGAGACCAG
chr14	55550273	55550539	56480520	56480786	-	29	266	3	L1PA3	"COLO1T,COLO1N"	35	73	"MSTD,L1PA3"				c14p55550406FS	ACATTCCATTTGCTTAGGTAGAAG	c14p55550406ES	TCATTCTCAGTAAACTATCGCAAG
chr14	57087848	57088263	58018095	58018510	-	201	415	11	L1PA2	"COLO1T,COLO1N"	878	415	"(TTTTA)n,L1PA2,L1PA7"				c14p57088055FS	GTAAAAGCATTCCTATTTCTCCAC	c14p57088055ES	TGGAAATCATCATTCTCAGTAAAC
chr14	57574984	57575452	58505231	58505699	+	13	468	5	L1HS	"COLO1T,COLO1N"	30	519	"L1HS,Charlie4a,LTR16B"		C14orf37		c14p57575218FS	AGGACTGAGAGAAAGACTCAAATG	c14p57575218ES	TCATTCTCAGTAAACTATCGCAAG
chr14	58290126	58290654	59220373	59220901	+	16092	528	44	noL1	"COLO1T,COLO1N"	7680	439	"AluJr,L2c"	"LINE:dbRIP,Ewing,Iskow,Stewart"			c14p58290390FS	TCCATACAAAGCTTTAGTTTCTCC	c14p58290390ES	ATTTGTAAACTGGTTATTGGGAAC
chr14	58591700	58591916	59521947	59522163	-	43	216	2	noL1	"COLO1T,COLO1N"	56	216					c14p58591808FS	TGTTTATTCTCTGTCTCTTTTCCC	c14p58591808ES	TCCCAAATTCATACTCAAATTTTC
chr14	60548759	60549146	61479006	61479393	-	220	387	15	noL1	"COLO1T,COLO1N"	865	378	L1PA4		SLC38A6		c14p60548952FS	ATTCAACTTCTTCCTGGTTTAGTG	c14p60548952ES	AGACATCTACAGAACTCTCCAACC
chr14	60591015	60591634	61521262	61521881	-	148909	619	87	L1HS	"COLO1T,COLO1N"	549049	640	"L1HS,L1PA14"		SLC38A6		c14p60591324FS	TTCTGTGAAGAATGTCATTGGTAG	c14p60591324ES	TAATGCTAGATGACACGTTAGTGG
chr14	61370182	61370504	62300429	62300751	-	112	322	5	noL1	"COLO1T,COLO1N"	766	325	(T)n				c14p61370343FS	TTTGTATTTTTAGTAGAGACGGGG	c14p61370343ES	AGTCTAAGACCAACCTGGCTAAC
chr14	61820835	61820992	62751082	62751239	-	958	157	16	L1PA3	"COLO1T,COLO1N"	1514	507	"L1PA3,(T)n"				c14p61820913FS	TGTTTGTCATTCTCTCAAAATCTG	c14p61820913ES	TCATTCTCAGTAAACTATCGCAAG
chr14	62078283	62078659	63008530	63008906	+	2559	376	31	L1HS	"COLO1T,COLO1N"	17382	376	"L1HS,AT_rich"				c14p62078471FS	AGATGATATTGAAGTTCAGCCTTC	c14p62078471ES	TCATTCTCAGTAAACTATCGCAAG
chr14	62652767	62653233	63583014	63583480	-	29	466	10	L1HS	"COLO1T,COLO1N"	3027	667	"L1HS,L1M6"				c14p62653000FS	TGGTAATTCATTCTGAGACATCAC	c14p62653000ES	TCATTCTCAGTAAACTATCGCAAG
chr14	65311545	65311935	66241792	66242182	+	97	390	5	L1PA3	"COLO1T,COLO1N"	459	390	"MER110A,L1PA3,MLT2D"				c14p65311740FS	TTACAGAGTCTGATAGCATCTTGC	c14p65311740ES	TCATCATTCTCAGTAAACTATCGC
chr14	65720207	65720485	66650454	66650732	-	10	278	2	noL1	"COLO1T,COLO1N"	3	65	L1PA5				c14p65720346FS	AAATTTCACTGTAACCTCAAGCTC	c14p65720346ES	AACTAGAAATACCATTTGACCCAG
chr14	66299584	66299691	67229831	67229938	-	42	107	5	L1HS	"COLO1T,COLO1N"	81	248	MER2		GPHN		c14p66299637FS	AGACTCTTCTCAAAAGTATGGTGG	c14p66299637ES	ATGATGAGTTCATGTCCTTTGTAG
chr14	66489285	66489667	67419532	67419914	-	3155	382	20	noL1	"COLO1T,COLO1N"	4597	385	"L1MB5,AluSx3"	"LINE:Ewing,Iskow"	GPHN		c14p66489476FS	TTAACTTTTAAGGAAGTGCCAAAC	c14p66489476ES	TATGACACCAAAAGTACAAGCAAC
chr14	66589341	66589863	67519588	67520110	+	12	522	2	noL1	"COLO1T,COLO1N"	25	525	L1PA10		GPHN		c14p66589602FS	TCATAAAATGAGTCAGAGAGGAGTC	c14p66589602ES	CAGACCACAGTGCAATAAAATTAG
chr14	69964910	69965341	70895157	70895588	-	11	431	4	L1PA14	"COLO1T,COLO1N"	47	430	"L1PA14,L1M5"				c14p69965125FS	AAATATTTGTGTCCACGCTATATG	c14p69965125ES	AAGGTAACCCTTATACACTGTTGG
chr14	70089740	70090371	71019987	71020618	+	29850	631	55	L1HS	"COLO1T,COLO1N"	73107	631	"L1HS,L1M1"				c14p70090055FS	TAATCATTTGACTTCTTCCTTTCC	c14p70090055ES	TGGGAGATATACCTAATGCTAGATG
chr14	70267504	70267809	71197751	71198056	+	232	305	5	noL1	"COLO1T,COLO1N"	66	301	"AluJb,L2b"	"LINE:Ewing,Iskow"	MAP3K9		c14p70267656FS	CACATGTTTATTACATGGATGAGC	c14p70267656ES	ATTCCTGGTCAAAAAGACAAAAG
chr14	70495359	70495752	71425606	71425999	-	18	393	3	L1PA3	"COLO1T,COLO1N"	115	394	"L1PA3,MLT1K,(T)n"		PCNX		c14p70495555FS	GATATAGAGAAATTTCCTCCCACC	c14p70495555ES	TCATTCTCAGTAAACTATCGCAAG
chr14	75436000	75436105	76366247	76366352	-	42	105	7	noL1	"COLO1T,COLO1N"	100	102	AT_rich		"TTLL5,BCYRN1"		c14p75436052FS	GACCTAAACCATTTTGTGTACCAG	c14p75436052ES	CTTTCCACTTTCATTTTGAGGAC
chr14	76288354	76288468	77218601	77218715	+	54	114	2	L1PA4	"COLO1T,COLO1N"	211	160	"L1PA4,MER5A"				c14p76288411FS	ATTGTTTTTACCTCTGTCCTCATC	c14p76288411ES	ATGATGAGTTCATGTCCTTTGTAG
chr14	78844690	78845071	79774937	79775318	-	2266	381	25	L1HS	"COLO1T,COLO1N"	12510	651	"(TTTTA)n,L1HS,(TTTA)n"		"KIAA0743,NRXN3"		c14p78844880FS	TCATTTCTCCATTCTTAACCTCTC	c14p78844880ES	TCATTCTCAGTAAACTATCGCAAG
chr14	80538462	80538960	81468709	81469207	-	2301	498	38	L1HS	"COLO1T,COLO1N"	5353	278	"L1HS,MIR,(T)n"	LINE:dbRIP	TSHR		c14p80538711FS	AATGGGATTGTTTTAAAGTACAGC	c14p80538711ES	TAATGCTAGATGACACGTTAGTGG
chr14	80546757	80546924	81477004	81477171	-	11	167	3	noL1	"COLO1T,COLO1N"	1881	403	"LTR67B,L1ME3C"	LINE:Iskow	TSHR		c14p80546840FS	CTCTTCCCAGTTTATAACTTGCC	c14p80546840ES	AAAGAAGAAAAGAAAGGAAGGAAG
chr14	82705401	82705672	83635648	83635919	-	299	271	13	L1HS	"COLO1T,COLO1N"	562	273	"L1HS,MIR,AT_rich"	LINE:dbRIP			c14p82705536FS	GAACTGGAACTGAAATTGGAATAC	c14p82705536ES	ATGATGAGTTCATGTCCTTTGTAG
chr14	82878098	82878741	83808345	83808988	+	14	643	5	L1PA5	"COLO1T,COLO1N"	20	66	"LTR25,L1PA5"				c14p82878419FS	AGCTGAAATAATGATTCACAGATG	c14p82878419ES	AACTAGAAATACCATTTGACCCAG
chr14	85219312	85219515	86149559	86149762	+	23277	203	25	noL1	"COLO1T,COLO1N"	47397	471	LTR16B2	"LINE:Ewing,Iskow"			c14p85219413FS	TAAATGGAAATTATTCTTTTTGGG	c14p85219413ES	CTGGAAAATTACCACAGTCTTCTC
chr14	85377258	85377637	86307505	86307884	+	366	379	12	noL1	"COLO1T,COLO1N"	332	379	"L2,AluY"	"LINE:Ewing,Iskow"			c14p85377447FS	AGCAAGAAACTGAAAATAGCTTTG	c14p85377447ES	GTGAAGAGGAGTGGAGTCAGAG
chr14	85427656	85427906	86357903	86358153	+	41	250	4	L1PA2	"COLO1T,COLO1N"	57	537	"L1PA2,MSTC"				c14p85427781FS	AACGAAATGTCTGTAGTCAAAATG	c14p85427781ES	CAAATGTCCAACAATGATAGACTG
chr14	85451064	85451580	86381311	86381827	-	945	516	13	noL1	"COLO1T,COLO1N"	1594	610	L1MC1	"LINE:Ewing,Iskow"			c14p85451322FS	CAAATGCATAGTGACTTTATCTGC	c14p85451322ES	AACAAAAGAAGAAAACAAACAACC
chr14	86134882	86135069	87065129	87065316	-	49	187	11	noL1	"COLO1T,COLO1N"	267	198					c14p86134975FS	CCAGAGTGAAATAAAAATTTGGAG	c14p86134975ES	AGCCTCAAGAAGCAAGTAGAATAC
chr14	88516554	88517023	89446801	89447270	-	3925	469	35	L1HS	"COLO1T,COLO1N"	16255	612	"MLT1N2,L1HS"	LINE:Iskow			c14p88516788FS	AAATATTGCATGGGATACATTAGC	c14p88516788ES	CTACATGGATATACCACATTTTGC
chr14	89566815	89567246	90497062	90497493	-	308	431	12	L1PA3	"COLO1T,COLO1N"	723	382	"L1PA3,L2b,AluSz"	LINE:Ewing	TDP1		c14p89567030FS	TATTCTGTCTAGAGTTTGTGCCTG	c14p89567030ES	TAGGTTTCAATTTCTGTGTTTGTC
chr14	89781469	89782241	90711716	90712488	-	10	772	8	L1PA4	"COLO1T,COLO1N"	47	97	L1PA4				c14p89781855FS	ATGTGGTCGAAGTGCTGTAAC	c14p89781855ES	TCTCAAAAGAAGACATTTATGCAG
chr14	90925774	90926207	91856021	91856454	+	15	433	4	noL1	"COLO1T,COLO1N"	38	437	"FLAM_C,AluY,A-rich"		CCDC88C		c14p90925990FS	GTGCTTAAATCTGTGTCAAGGAG	c14p90925990ES	GCTATCCTAGGACTATCCATCATC
chr14	92847834	92848079	93778081	93778326	-	111	245	6	noL1	"COLO1T,COLO1N"	214	245	AT_rich		BTBD7		c14p92847956FS	GAAACCACAATCTCAGTAATAGGG	c14p92847956ES	AATGTGGGGAGAATATATGAAATG
chr14	94675021	94675569	95605268	95605816	+	2076	548	21	L1HS	"COLO1T,COLO1N"	11789	545	"L1HS,(A)n"		"KIAA0928,DICER1"		c14p94675295FS	GAAATTTAAGAGGTGCAAAGAATG	c14p94675295ES	ACACCGCATATTCTCACTCATAG
chr14	102190767	102191275	103121014	103121522	-	35	508	6	noL1	"COLO1T,COLO1N"	68	70	"AluJr,FLAM_C,(T)n"		RCOR1		c14p102191021FS	TAATTTAGAATTAATGAGGCCAGG	c14p102191021ES	TTAAGGTATTGAGAGGAAGGAATG
chr14	103803917	103804772	104734164	104735019	-	1613	855	23	L1HS	"COLO1T,COLO1N"	8404	855	"L1MC3,L1HS"				c14p103804344FS	TTTCCTAGAAACCTGGTAAAAATG	c14p103804344ES	TAATGCTAGATGACACGTTAGTGG
chr15	18281847	18282279	20021834	20022265	-	663	432	22	L1HS	"COLO1T,COLO1N"	3908	432	"(TTTA)n,L1HS,ALR/Alpha"				c15p18282063FS	AAGACACCTGAATCAAAAGAAAAG	c15p18282063ES	TCATTCTCAGTAAACTATCGCAAG
chr15	18306948	18307407	20046934	20047393	-	23	459	3	noL1	"COLO1T,COLO1N"	22	507	AluSp				c15p18307177FS	AATCTCATTCCAACAATTACCATC	c15p18307177ES	TATACGCATATGAATACAACTCGC
chr15	18376768	18376999	20116754	20116985	+	35	231	5	noL1	"COLO1T,COLO1N"	200	232		LINE:Iskow			c15p18376883FS	GGAAGAAAACCATTCTTAACACTC	c15p18376883ES	CATGTTCTCCTTGTGAAATAATTG
chr15	21934957	21935283	24383864	24384190	+	10015	326	21	L1HS	"COLO1T,COLO1N"	25233	439	"L1MC,L1HS,L1MC1"	LINE:dbRIP			c15p21935120FS	AAAAGACAAAGTTTTCCATGACTC	c15p21935120ES	GATGAGTTCATATCCTTTGTAGGG
chr15	22270924	22271051	24719831	24719958	-	16	127	3	L1PA4	"COLO1T,COLO1N"	31	127	"T-rich,L1PA4"				c15p22270987FS	ATCTGTCCCCATTAATTGACTTAC	c15p22270987ES	TGAAATACATAAACTGAGGAGTGG
chr15	25044391	25044718	27461645	27461972	-	964	327	13	L1HS	"COLO1T,COLO1N"	4296	604	"L1HS,(TTTA)n"		GABRG3		c15p25044554FS	GAGCGAAGGTGAAGTATATCTAGC	c15p25044554ES	ATGATGAGTTCATGTCCTTTGTAG
chr15	27199049	27199566	29411757	29412274	+	379	517	6	L1HS	"COLO1T,COLO1N"	434	518	"(TAAA)n,L1HS,L1M4b"	LINE:dbRIP			c15p27199307FS	AAGGTGTTTTAATAATGATCCGTG	c15p27199307ES	TCATTCTCAGTAAACTATCGCAAG
chr15	29990913	29991176	32203621	32203884	+	23	263	5	L1PA16	"COLO1T,COLO1N"	73	263	"L1PA3,L1PA16"				c15p29991044FS	CAAATGTCCAACAATGATAGACTG	c15p29991044ES	TGTAAACAAAACAAAAATGTCTGC
chr15	30268783	30269077	32481491	32481785	+	12	294	3	noL1	"COLO1T,COLO1N"	26	294	L1PA3		DKFZp434L187		c15p30268930FS	CTTCTAAAGCAAAAGAGTCACAGG	c15p30268930ES	AACTAGAAATACCATTTGACCCAG
chr15	31043024	31043297	33255732	33256005	+	364	273	7	L1PA3	"COLO1T,COLO1N"	777	358	"L2a,MER3,AT_rich"		FMN1		c15p31043160FS	AAACAAGGTCAAAAAGGTACTGAG	c15p31043160ES	CATAGGTGGATACTGAACAATGAG
chr15	31658206	31658673	33870914	33871381	+	15	467	8	L1PA10	"COLO1T,COLO1N"	115	468	L1PA10		RYR3		c15p31658439FS	GCCTCTATCTCCATGTTAATTTTG	c15p31658439ES	CTCAGTTATAAGTGGGACCTGAAC
chr15	33360122	33360490	35572830	35573198	-	16	368	7	L1PA3	"COLO1T,COLO1N"	31	368	L1PA3				c15p33360306FS	GGGTAAAGAAAAATCACTTGTAGC	c15p33360306ES	TAAAAATAAGAGTTTGCTTGAGGG
chr15	34766012	34766318	36978720	36979026	+	7787	306	71	L1PA3	"COLO1T,COLO1N"	56742	418	"AluJb,L1PA3,G-rich"		C15orf41		c15p34766165FS	TATTCCCCTATTACCCTTTATTCC	c15p34766165ES	TCATTCTCAGTAAACTATCGCAAG
chr15	35494693	35495108	37707401	37707816	-	14056	415	17	noL1	"COLO1T,COLO1N"	20533	429	MER33	"LINE:Ewing,Stewart"			c15p35494900FS	AGTCTAAGAAATGAGGCAGAGATG	c15p35494900ES	CTTAATAGAAAGCTCTCAACCAGC
chr15	35584192	35584502	37796900	37797210	+	77	310	4	noL1	"COLO1T,COLO1N"	555	73	L1PA10				c15p35584347FS	ATTGTTTGGAATAGCTTCTGAAAG	c15p35584347ES	CACAGTGCAATCAAATTAGAACTC
chr15	38524701	38524815	40737409	40737523	+	44	114	4	noL1	"COLO1T,COLO1N"	93	70	(A)n		BAHD1		c15p38524758FS	TGCTGCTTTATTTACATTCTTCAC	c15p38524758ES	AAAATATATTCTGCATCCATCCC
chr15	39086653	39087283	41299361	41299991	-	11	630	5	noL1	"COLO1T,COLO1N"	16	68	AluSx1		INO80		c15p39086968FS	CTTAGAGGCTTGCTATACCTTTTG	c15p39086968ES	ATTCAGCCTTTTAACACATCTTTC
chr15	41941751	41941863	44154459	44154571	-	13	112	3	noL1	"COLO1T,COLO1N"	43	66	"AluSx,(T)n"		WDR76		c15p41941807FS	TCACCTCTTAGGTTCAAGCTATTC	c15p41941807ES	ATCCTGGCTAACACAGTGAAAC
chr15	42337520	42337829	44550228	44550537	+	70	309	3	L1PA2	"COLO1T,COLO1N"	503	357	"L1PA2,(CATGT)n"				c15p42337674FS	ATATCTGTTCTTTCTTGGCTTGTC	c15p42337674ES	TCATTCTCAGTAAACTATCGCAAG
chr15	43704651	43705078	45917359	45917786	+	42	427	3	L1PA6	"COLO1T,COLO1N"	108	65	"AluY,L1PA6"				c15p43704864FS	AGAATTGCTTTAATCCAGGAGAC	c15p43704864ES	GACTTGGAACCAACCTAAATGTC
chr15	44125942	44126135	46338650	46338843	+	14	193	3	noL1	"COLO1T,COLO1N"	154	181	"L1PA3,L1PA16"				c15p44126038FS	AGCTCCTGTTATTGGTCTATTCAG	c15p44126038ES	TTTCTTTACCCAATTCACTCTACC
chr15	44338202	44338910	46550910	46551618	+	44	708	2	noL1	"COLO1T,COLO1N"	191	433	"L1PA13,AluSx"				c15p44338556FS	TGAGATGGGATTTCTACCTAACTC	c15p44338556ES	TTGATTTTGTATCCTGAGACATTG
chr15	44692021	44692163	46904729	46904871	-	17	142	2	L1PA3	"COLO1T,COLO1N"	12	161	"L1MCc,L1PA3"				c15p44692092FS	TTAATTCTGGGTTAACAGTGTTTG	c15p44692092ES	TAGACTGGATTAAGAAAATGTGGC
chr15	45077002	45077497	47289710	47290205	-	10422	495	22	L1HS	"COLO1T,COLO1N"	33652	498	L1HS				c15p45077249FS	CTAGTGGATGATGAAAACATTGAC	c15p45077249ES	TCATTCTCAGTAAACTATCGCAAG
chr15	47338896	47339099	49551604	49551807	-	117	203	4	L1PA3	"COLO1T,COLO1N"	664	553	L1PA3		GALK2		c15p47338997FS	TAGATTCTGGATATTAGCCCTTTG	c15p47338997ES	GATGAGTTCATATCCTTTGTAGGG
chr15	47625153	47625480	49837861	49838188	-	18	327	5	L1PA4	"COLO1T,COLO1N"	78	327	"L1PB1,L1PA4"		C15orf33		c15p47625316FS	TTAGTTCTGCTCTGATCTTTGTTG	c15p47625316ES	ATGATGAGTTCATGTCCTTTGTAG
chr15	48976721	48976960	51189429	51189668	+	76	239	5	noL1	"COLO1T,COLO1N"	218	274		LINE:Ewing			c15p48976840FS	AACATTTTACTGAAAATCTCTGCC	c15p48976840ES	ATGGTGAAACCCCATCTTTAC
chr15	49110675	49111164	51323383	51323872	-	101	489	13	L1PA3	"COLO1T,COLO1N"	928	298	"L1PA3,L1M1"				c15p49110919FS	GCGTATGTCTAGAAATGTCATCTG	c15p49110919ES	AAAAACCAAACACCACATATTCTC
chr15	49496300	49496737	51709008	51709445	-	485	437	16	L1HS	"COLO1T,COLO1N"	2643	447	"MER4-int,L1HS,(TTG)n"				c15p49496518FS	AGAAAAACAACAAAAGAACAATCC	c15p49496518ES	TCATTCTCAGTAAACTATCGCAAG
chr15	49662144	49662659	51874852	51875367	-	16375	515	56	L1HS	"COLO1T,COLO1N"	49824	514	"L1HS,AT_rich,L1MC4a"		DMXL2		c15p49662401FS	ATGAAAAATCTTACAACCAAGAGG	c15p49662401ES	TTCTCAGTAAACTATCGCAAGAAC
chr15	51234798	51235378	53447506	53448086	-	137682	580	46	L1HS	"COLO1T,COLO1N"	259513	715	"LTR90A,L1HS,MIRb,MIRc"				c15p51235088FS	GGGTAAAGATTAGTAGTGTGGACG	c15p51235088ES	GAGGGATAGCATTGGGAGATATAC
chr15	51683958	51684634	53896666	53897342	+	30	676	2	noL1	"COLO1T,COLO1N"	25	676	L1PA13		WDR72		c15p51684296FS	CACGTGATCTTGTTCTCTTTTATG	c15p51684296ES	AACACAAAATTATAAAAACCCTGG
chr15	52916953	52917270	55129661	55129978	+	501	317	6	noL1	"COLO1T,COLO1N"	1249	474	L1M5	"LINE:Beck,Ewing"			c15p52917111FS	TTTCTTTAGCCATTCCAAGAATAC	c15p52917111ES	CTCTGGAACTCCTTTTTACTGAAG
chr15	53005512	53005631	55218220	55218339	-	271	119	31	L1HS	"COLO1T,COLO1N"	1175	121	"L1HS,L1M1"	"Alu:Hormozdiari,LINE:dbRIP"			c15p53005571FS	TTCAGCTTGAACAAGTTCTGTTAG	c15p53005571ES	TACCCAAAGGACTATAAATCATGC
chr15	54038511	54038783	56251219	56251491	+	337	272	3	noL1	"COLO1T,COLO1N"	758	67	L1MEf	"LINE:Ewing,Iskow"	NEDD4		c15p54038647FS	ATAGATCTGTCCCATGCTTAAGAG	c15p54038647ES	TTGTATTTGTTCTGTGGCTAGTTC
chr15	54067935	54068267	56280643	56280975	+	47	332	7	L1HS	"COLO1T,COLO1N"	167	407	"L1HS,L1MC4"		NEDD4		c15p54068101FS	TTTTGTATTTTTGGTAGAGATGGG	c15p54068101ES	TCATTCTCAGTAAACTATCGCAAG
chr15	54214060	54214164	56426768	56426872	-	75	104	11	L1PA2	"COLO1T,COLO1N"	258	104	L1PA2		RFX7		c15p54214112FS	TGAGTTCTAGTCTTAGATCTGCCC	c15p54214112ES	TACCCAAAGGACTATAAATCTTGC
chr15	55798775	55799375	58011483	58012083	-	3970	600	30	L1HS	"COLO1T,COLO1N"	17849	724	"L1ME3B,L1HS"				c15p55799075FS	TGTTACCTTCTGGATTCTTTCTTC	c15p55799075ES	TGGGAGATATACCTAATGCTAGATG
chr15	58270028	58270170	60482736	60482878	+	11	142	4	L1PA4	"COLO1T,COLO1N"	101	250	"AluJb,L1PA4"				c15p58270099FS	CTAACTCCAGAACATCACAGATTG	c15p58270099ES	ATTAGGAAAAAGAGAAGCATGTTG
chr15	59115908	59116244	61328616	61328952	-	10941	336	13	noL1	"COLO1T,COLO1N"	14007	571		"LINE:Ewing,Iskow,Stewart"	RORA		c15p59116076FS	GCATAAGCCTCTTAAAACTTTCTG	c15p59116076ES	AAATTTAATTCCTGAACTGACTGC
chr15	59981753	59982325	62194461	62195033	+	232	572	15	L1PA3	"COLO1T,COLO1N"	2182	457	"L1PA3,L1MA4"		VPS13C		c15p59982039FS	GTGTGTGGAGTCTTTAGGTTTTTC	c15p59982039ES	AATGCTAGATGACAAGTTAGTGGG
chr15	60095374	60095729	62308082	62308437	+	60829	355	27	L1HS	"COLO1T,COLO1N"	240252	383	"L1HS,(A)n"		VPS13C		c15p60095551FS	AACACTGCATGTTCTCACTCATAG	c15p60095551ES	TCATTCTCAGTAAACTATCGCAAG
chr15	62219340	62219557	64432287	64432504	-	43	217	4	noL1	"COLO1T,COLO1N"	54	217	L1MC4		SNX1	SNX1.L	c15p62219448FS	AATACTGCAGATTCCTCAACTTTC	c15p62219448ES	AGCGAGACTCTGTCTCAAAAATAG
chr15	62515954	62516071	64728901	64729018	-	18	117	3	noL1	"COLO1T,COLO1N"	551	118	"L2b,AluSc5"		TRIP4		c15p62516012FS	AATATAAAAATTAGTTGGGCATGG	c15p62516012ES	CTTTAGTAGACACAGGGTTTCACC
chr15	63318782	63319406	65531729	65532353	+	13	624	7	noL1	"COLO1T,COLO1N"	13	613	"AluY,(A)n,L1ME1,AluJb,AluSc"				c15p63319094FS	AGAGCGAGACTCTGTCTCAAAAC	c15p63319094ES	CTAAAAATACAAAAATTAGCCGGG
chr15	64100376	64100887	66313322	66313833	+	86	511	3	noL1	"COLO1T,COLO1N"	186	67	"L3,AluY,MIR3"		MEGF11		c15p64100631FS	CCAGAGCCTCCTGTAGAAAAG	c15p64100631ES	AAAATACAAAAAGTTAGCCAGGTG
chr15	64517404	64517533	66730350	66730479	-	187	129	4	noL1	"COLO1T,COLO1N"	28	73	"(T)n,AluSx3"		MAP2K1		c15p64517468FS	CCCATTTTATTCCTGATACTTGAG	c15p64517468ES	AAAGGTCAATGTAAATGAAGAAGC
chr15	64531622	64532038	66744568	66744984	+	7697	416	32	L1HS	"COLO1T,COLO1N"	25355	664	L1HS		MAP2K1		c15p64531830FS	TTTTAATCGCTGGTTTTTAGTTTC	c15p64531830ES	TCATTCTCAGTAAACTATCGCAAG
chr15	68814504	68815139	71027450	71028085	+	17969	635	28	L1HS	"COLO1T,COLO1N"	58883	673	"AluJb,L1HS,L1PA16"	LINE:dbRIP	UACA		c15p68814821FS	TCTTACACCTGTAGTCCCAGCTAC	c15p68814821ES	TGGGAGATATACCTAATGCTAGATG
chr15	69259497	69259797	71472443	71472743	+	2541	300	24	L1PA2	"COLO1T,COLO1N"	4861	189	"L1M3,L1PA2,(A)n"		THSD4		c15p69259647FS	TCATTTTTAACAGTTTCATTGAGG	c15p69259647ES	TAGACTGGATTAAGAAAATGTGGC
chr15	69667130	69667245	71880076	71880191	+	2035	115	14	L1PA2	"COLO1T,COLO1N"	2252	715	"MIR,L1PA2,(A)n"		"UNQ9334,THSD4"		c15p69667187FS	TTTGTATTTTTAGTAGAGACGGGG	c15p69667187ES	AGCACTATTCACAATAGCAAAGAC
chr15	69941025	69941131	72153971	72154077	+	42	106	9	noL1	"COLO1T,COLO1N"	106	73	L2a		MYO9A		c15p69941078FS	TTTGTTTTTGAGATGGTGTCTTG	c15p69941078ES	CAATTTTAGCCCACTAGTAAAAGC
chr15	71611277	71611437	73824224	73824384	-	10	160	4	L1HS	"COLO1T,COLO1N"	137	134	"L1HS,L1PA2,L2"		C15orf60		c15p71611357FS	CTTTATATGAAGTGTAGTGTGGCG	c15p71611357ES	CGTATGTTTACTGTGGCACTATTC
chr15	76352534	76352849	78565479	78565794	-	14	315	2	L1PA5	"COLO1T,COLO1N"	49	107	L1PA5		DNAJA4	"DNAJA4.2,DNAJA4.3,DNAJA4.1"	c15p76352691FS	TTCTCAGAAAATAAAGGTGGAAAG	c15p76352691ES	TTCATTTATGTACTATGACGGCAG
chr15	76780703	76780806	78993648	78993751	-	45	103	3	noL1	"COLO1T,COLO1N"	137	97	L1MA2				c15p76780754FS	ATATATCACACCACACTCTCCTGG	c15p76780754ES	GAAACCCCGTCTCTACTAAAAATAC
chr15	76805215	76805501	79018160	79018446	+	174	286	5	L1PA3	"COLO1T,COLO1N"	317	381	L1PA3				c15p76805358FS	AAAAATACAAAAACTAGCCAGGTG	c15p76805358ES	GATGAGTTCATGTCCTTTGTAGG
chr15	78025001	78025231	80237946	80238176	+	16	230	4	noL1	"COLO1T,COLO1N"	17	68	"(CAAAAA)n,L1MC4a"				c15p78025116FS	CTTAGCATCCATCAACAGTTTTC	c15p78025116ES	TACCAGATCCTGAAGGAAAATTAC
chr15	78250307	78250488	80463252	80463433	-	40	181	2	L1PA4	"COLO1T,COLO1N"	113	182	AT_rich		FAH		c15p78250397FS	TAGCAAGGGTACTATGTGAGACTG	c15p78250397ES	TAAAAATTTTCATTGCTCAATTCC
chr15	81348349	81348682	83551295	83551628	-	14047	333	21	noL1	"COLO1T,COLO1N"	23440	350			HOMER2		c15p81348515FS	TTCTGTGGACACAGTACACCTG	c15p81348515ES	ATGTTGATCTGAACCATGATGAC
chr15	81849088	81849826	84058084	84058822	+	15	738	5	L1PA2	"COLO1T,COLO1N"	257	315	"L1MB2,L1PA2"				c15p81849457FS	GAAATCTCAGAATTAAAAACAGGG	c15p81849457ES	CAAATGTCCAACAATGATAGACTG
chr15	81910066	81910629	84119062	84119625	-	173	563	18	L1HS	"COLO1T,COLO1N"	787	550	"T-rich,L1HS"		"SH3GL3,EEN-B2-L1"		c15p81910347FS	GAACATAACTTAACCCATCTGGAC	c15p81910347ES	AATGCTAGATGACACTTTAGTGGG
chr15	82942069	82942184	85141065	85141180	+	68	115	5	noL1	"COLO1T,COLO1N"	33	765	L1M1				c15p82942126FS	TCTTACTAATACCCCACACAAAGG	c15p82942126ES	CCTATCCTACAGGAAATGCTAAAG
chr15	84197912	84198511	86396908	86397507	+	44	599	3	noL1	"COLO1T,COLO1N"	58	66	"AluY,AluSq,MamGypLTR1d"				c15p84198211FS	TGTTTTGTTTTTGGTAGCTATCTG	c15p84198211ES	AACATAGTGAAACCCCATCTCTAC
chr15	84495488	84495912	86694484	86694908	+	33	424	7	L1PA6	"COLO1T,COLO1N"	198	424	"L1PA3,L1PA6"		AGBL1		c15p84495700FS	GGCTCTCTGTTAATGGTGTATAGG	c15p84495700ES	CTTACTCATAGGTGGGAATTGAAC
chr15	85860098	85860356	88059094	88059352	+	579463	258	64	L1HS	"COLO1T,COLO1N"	1034465	263	"L1HS,AluYc,L1MA7"	LINE:Iskow			c15p85860227FS	GTCTTTCTAATTCACTTAGGGTCG	c15p85860227ES	CAAATGTCCAACAATGATAGACTG
chr15	86895250	86895830	89094246	89094826	-	17	580	5	noL1	"COLO1T,COLO1N"	31	716	"L1PA3,HERVH-int"				c15p86895540FS	CTGCCAGGTAAGTTGAACAGTC	c15p86895540ES	ATGATGAGTTCATGTCCTTTGTAG
chr15	88630683	88630802	90829679	90829798	+	11	119	3	noL1	"COLO1T,COLO1N"	18	476	"AluJb,(A)n"				c15p88630742FS	TTGCTGCTTTTAGAAGAAATAAAG	c15p88630742ES	ATATGTGTTGTACATCCAGTCAGC
chr15	89404809	89405210	91603805	91604206	+	16	401	2	noL1	"COLO1T,COLO1N"	12	401	"L1PA5,MER20"				c15p89405009FS	ATAACTTTTTCTCCCTCCTACCTC	c15p89405009ES	ACAAGCACAGGTATGTTTATTGTG
chr15	89519928	89520152	91718924	91719148	-	62	224	5	L1PA3	"COLO1T,COLO1N"	389	375	"(TA)n,L1PA3"		SV2B		c15p89520040FS	TTTGTATTTTTAATAGAGACGGGG	c15p89520040ES	CAAATGTCCAACAATGATAGACTG
chr15	90106624	90107042	92305620	92306038	-	99	418	9	L1PA2	"COLO1T,COLO1N"	207	430	"L1PA2,L2b"				c15p90106833FS	TAGAATCTAAACCATAGGGCTGTC	c15p90106833ES	TCATTCTCAGTAAACTATCGCAAG
chr15	91036534	91037010	93235530	93236006	+	527	476	10	L1PA2	"COLO1T,COLO1N"	2216	479	"L1M3,L1PA2,(A)n"		FAM174B		c15p91036772FS	GGAATGTGTGACTAAAGTACCTCC	c15p91036772ES	AAAGACAATGAATCAGAAAAATGC
chr15	95609679	95609861	97808675	97808857	-	10	182	3	L1PA2	"COLO1T,COLO1N"	80	414	"L1PA2,L2"				c15p95609770FS	ATACCTAGGAGTCACCAGTAATGC	c15p95609770ES	TCATTCTCAGTAAACTATCGCAAG
chr15	96001053	96001361	98200049	98200357	+	615	308	4	noL1	"COLO1T,COLO1N"	1569	610	MSTB	"LINE:Ewing,Iskow"			c15p96001207FS	GAATGGTAGATCCTACACATAGGC	c15p96001207ES	ATCTCTGAGGATGAATTGGTATTG
chr15	96639689	96639985	98822166	98822462	+	66	296	2	L1PA4	"COLO1T,COLO1N"	2	75	L1PA4				c15p96639837FS	GTCATACTTTCCCTGTCTTGTTTC	c15p96639837ES	GACTGTAAACTTGTTCAACCATTG
chr15	98748474	98748715	100930951	100931192	-	194	241	4	noL1	"COLO1T,COLO1N"	352	277	L1MDa	"LINE:dbRIP,Ewing,Iskow"			c15p98748594FS	TCATCATGCTTAATGGTGAGTAAC	c15p98748594ES	TTTTGTGTCTCTTGTCTCTTTCTG
chr15	98756667	98756880	100939144	100939357	-	18	213	2	noL1	COLO1T	0	0	"L1ME3A,AluY"				c15p98756773FS	TCCATTTCTTCTTTGATCTACAGG	c15p98756773ES	TGGACAAATATATACCATGCAAAC
chr16	6669885	6670340	6729884	6730339	-	21	455	6	noL1	"COLO1T,COLO1N"	54	455	"MIR,(T)n,AluY"		A2BP1		c16p6670112FS	CCACACCATACAAGAGTACTTGAG	c16p6670112ES	TCTGCTAGGAGGTCTAAGAAAAAG
chr16	6733904	6734230	6793903	6794229	+	371	326	8	noL1	"COLO1T,COLO1N"	161	313	L1MEc	"LINE:dbRIP,Ewing,Iskow,Stewart"	A2BP1		c16p6734067FS	CTGCTATTTTAGGATAGAGGGTTC	c16p6734067ES	ATTTAAAAATTGAAGTGAGCATGG
chr16	6914306	6914679	6974305	6974678	-	362	373	5	L1PA4	"COLO1T,COLO1N"	943	192	"MIR,MSTB"		A2BP1		c16p6914492FS	ACAAACATTAGTCAGGTATGGTGG	c16p6914492ES	AGGTAGGAATTGAACAATGAGAAC
chr16	7865362	7865857	7925361	7925856	+	81336	495	63	L1HS	"COLO1T,COLO1N"	208734	500	"THE1B,L1HS,AT_rich,MIRb,MIR3"				c16p7865609FS	AAATGATGAAAATGAGGTTCAAAG	c16p7865609ES	TCTTCTAATGGAACTCACTCATAGG
chr16	8050763	8051346	8110762	8111345	+	1725	583	17	L1HS	"COLO1T,COLO1N"	5425	807	"L1HS,L1PA3,A-rich"				c16p8051054FS	TTTTGTATTTTTGGTAGTGACCG	c16p8051054ES	TAATGCTAGATGACACGTTAGTGG
chr16	8858612	8858869	8951111	8951368	-	13	257	2	noL1	"COLO1T,COLO1N"	67	257	"AluSq,MIRb"		"PMM2,CARHSP1"		c16p8858740FS	TTTCAGACACTCAGGAAGGAAG	c16p8858740ES	AACAAGAGCAAGACTCCATCTC
chr16	9585394	9585894	9677893	9678393	-	62962	500	87	L1HS	"COLO1T,COLO1N"	117471	529	"L1HS,MIR,(T)n,MIR3"				c16p9585644FS	CATGTAAAGCCAGTACTCAGACAC	c16p9585644ES	TCATTCTCAGTAAACTATCGCAAG
chr16	10287953	10288093	10380452	10380592	-	12	140	2	L1PA4	"COLO1T,COLO1N"	14	65	"L1PA4,HERVH-int"				c16p10288023FS	ACAAGCCTTACAAGTTAGTTCAGG	c16p10288023ES	TATACACCGTGGAATACTATGCAG
chr16	10413341	10413446	10505840	10505945	-	10	105	4	L1PA6	"COLO1T,COLO1N"	31	92	"L1PB1,L1PA6"		ATF7IP2		c16p10413393FS	TTTTTAGTAGAGATGTGGTTTCACC	c16p10413393ES	AATTAAATAACCTGCTCCTGAATG
chr16	12747696	12748446	12840195	12840945	+	11	750	5	noL1	"COLO1T,COLO1N"	82	67	"AluSx,A-rich,L1MEc"		FLJ11151		c16p12748071FS	CCATTTATTTCCCATTCTTCTTC	c16p12748071ES	CAGAGTTACAGTGAGCTGAGAGTG
chr16	13190989	13191501	13283488	13284000	-	1718	512	13	L1PA2	"COLO1T,COLO1N"	16298	536	"L1PA2,L2b"				c16p13191245FS	AAAGTTTTTACGTGGTTAATGTGC	c16p13191245ES	TCTAAAGACTAAAGGGTGTTTTGC
chr16	14581637	14582088	14674136	14674587	-	12	451	2	noL1	"COLO1T,COLO1N"	33	451	AluSz		PARN		c16p14581862FS	CTACATTTCCAAAGACAAACACTG	c16p14581862ES	TCTTCATTAGGTTCTTTTCTCAGC
chr16	16119783	16120260	16212282	16212759	+	20	477	9	noL1	"COLO1T,COLO1N"	36	476	"(T)n,L1ME2"		ABCC1		c16p16120021FS	TGTTGTGTATTAGCATTTCATTCC	c16p16120021ES	AAACAAGAGTAAGAAACCATGAGG
chr16	16841511	16841931	16934010	16934430	-	58383	420	39	L1HS	"COLO1T,COLO1N"	120461	434	"L1HS,MIR3"				c16p16841721FS	ACAGATGGGAAGACATCTAAGAAC	c16p16841721ES	TCATTCTCAGTAAACTATCGCAAG
chr16	17117106	17117355	17209605	17209854	+	25	249	6	noL1	"COLO1T,COLO1N"	91	734	"L1ME4a,AluSz6,AluJb"		XYLT1		c16p17117230FS	ACTTTTATACTTCTATTTCCCCCG	c16p17117230ES	CTGAGGTGAGAGAATTACTTGAGC
chr16	17141865	17142057	17234364	17234556	+	384	192	3	noL1	"COLO1T,COLO1N"	245	191	AluSz6		XYLT1		c16p17141961FS	GTCCACCTACATTGTCCTCTACAC	c16p17141961ES	TGGAGTATGACTTATGAAACCAAC
chr16	17662424	17662826	17754923	17755325	-	82	402	3	noL1	"COLO1T,COLO1N"	517	424	"AluYc,MIRb"	"LINE:Ewing,Iskow"			c16p17662625FS	TAACATCTAGAAAGCAGACACCAG	c16p17662625ES	TATCTTAGATTTCTCAACCTTGGC
chr16	18969794	18970121	19062293	19062620	-	12	327	5	L1PA4	"COLO1T,COLO1N"	42	393	"AluJr,L1PA4,L1M5"		TMC7		c16p18969957FS	TTTTTAATAGAGATGGGGTTTCAC	c16p18969957ES	AAAAGGTTTCATCCAAACTATCAC
chr16	20103904	20104373	20196403	20196872	-	13	469	4	L1PA2	"COLO1T,COLO1N"	96	469	L1PA2				c16p20104138FS	ACTATACCCTGTGTGTGGAAGAAC	c16p20104138ES	TAGATTCTGGATATTAGCCCTTTG
chr16	22618291	22618824	22710790	22711323	-	1633	533	19	L1HS	"COLO1T,COLO1N"	5800	1022	"(TTTTA)n,L1HS,MIR,Tigger4b"				c16p22618557FS	GTGCTCAATAAATGCTTGACAG	c16p22618557ES	ACACCGCATATTCTCACTCATAG
chr16	23498273	23499017	23590772	23591516	+	26	744	5	L1PA15	"COLO1T,COLO1N"	98	71	"(CA)n,L1PA15,AluSq2,AluSx1"				c16p23498645FS	TAGAGTTATTCCAGGCATGTTAGG	c16p23498645ES	GAGGTTGTAGTTAGCCAAGATAGC
chr16	25213624	25214105	25306123	25306604	+	25057	481	65	L1HS	"COLO1T,COLO1N"	57309	697	"AluJb,L1HS,AT_rich,MIRc"				c16p25213864FS	TTTGTATTTTTAGTAGAGACGGGG	c16p25213864ES	TCATTCTCAGTAAACTATCGCAAG
chr16	25421234	25421951	25513733	25514450	-	7194	717	40	L1HS	"COLO1T,COLO1N"	34621	717	"L2a,AluJb,L1HS"				c16p25421592FS	TTTTCCCAAATATTTTCAAAGAAG	c16p25421592ES	TGGGAGATATACCTAATGCTAGATG
chr16	27008051	27008277	27100550	27100776	+	2793	226	11	noL1	COLO1T	0	0	L1MDa				c16p27008164FS	TTTCTATTGATGCTGTAGGTGATG	c16p27008164ES	AGAGATGAGGTTTCTCCATGTTAG
chr16	27575720	27576044	27668219	27668543	+	62	324	6	L1PA2	"COLO1T,COLO1N"	648	326	"L1PA2,L1MC4"		KIAA0556		c16p27575882FS	GCTAGGATTATAGGTGTTAGCCAC	c16p27575882ES	TCATTCTCAGTAAACTATCGCAAG
chr16	31485459	31485608	31577958	31578107	-	109	149	5	noL1	COLO1T	0	0					c16p31485533FS	ACAGCAATAGAGTCCAAATTGAAG	c16p31485533ES	CCATCAGTTAGGAAAATTAAATGC
chr16	32431042	32431384	32523541	32523883	-	1221	342	15	noL1	"COLO1T,COLO1N"	2705	468	ALR/Alpha	LINE:Ewing			c16p32431213FS	TTTATCCTGGGATATTCACTTTTC	c16p32431213ES	GTCATATGCTCATTCATCTCTCTG
chr16	32432733	32433165	32525232	32525664	-	8471	432	43	noL1	"COLO1T,COLO1N"	24352	683	ALR/Alpha	"LINE:Ewing,Stewart"			c16p32432949FS	AAATTCTACAAAAACAGCATTTCC	c16p32432949ES	TAGAAGGAGACTGTCTGAGAAACC
chr16	33662168	33662562	33754667	33755061	-	132480	394	37	L1HS	"COLO1T,COLO1N"	345612	857	"L1HS,AluSx"				c16p33662365FS	ACATGCCTTAGGTCACATCATAC	c16p33662365ES	TCATTCTCAGTAAACTATCGCAAG
chr16	33819928	33820539	33912427	33913038	+	49	611	10	L1PA3	"COLO1T,COLO1N"	212	344	"L1PA3,ALR/Alpha"				c16p33820233FS	AATTTCAACACTGTGAGATGAATG	c16p33820233ES	GACAAGTTAGTGAGTGCAGCATAC
chr16	33929044	33929402	34021543	34021901	-	4471	358	3	noL1	"COLO1T,COLO1N"	14219	658	ALR/Alpha				c16p33929223FS	TTTGTAGTATCTGGAAGTGGACAG	c16p33929223ES	TCAAAAGAAATGTTCAACTCTGTG
chr16	34699901	34700409	34842400	34842908	-	469	508	27	L1HS	"COLO1T,COLO1N"	843	492	"L1HS,AluSx1,(T)n,MER57A-int"				c16p34700155FS	ACAGAGTCTCACTCTATCACCCAG	c16p34700155ES	AACCATCATTCTCAGTAAACTATCG
chr16	34916972	34917279	35059471	35059778	-	139	307	3	L1PA4	"COLO1T,COLO1N"	45	69	"L1PA11,L1PA4"				c16p34917125FS	CTAAATGGTATTGCCTAGGTCTTC	c16p34917125ES	TCATTCTCAGTAAACTATCGCAAG
chr16	46237918	46238257	47680417	47680756	+	44	339	8	L1HS	"COLO1T,COLO1N"	149	296	"L1HS,(A)n,L1M5"		PHKB		c16p46238087FS	ATAAATAAAAACTGAGGGGGAAAG	c16p46238087ES	TCATTCTCAGTAAACTATCGCAAG
chr16	46606701	46606942	48049200	48049441	-	31	241	8	L1PA2	"COLO1T,COLO1N"	102	609	"L1PA2,MIR,MSTA"				c16p46606821FS	CACATGGCTATAAAGACATACCTG	c16p46606821ES	TAGACTGGATTAAGAAAATGTGGC
chr16	47898249	47898400	49340748	49340899	-	672	151	7	noL1	COLO1T	0	0					c16p47898324FS	AGTCAGCTCTGGACTACTTTTGAC	c16p47898324ES	GAGACTTGTATTTGTCACCATGAG
chr16	49671790	49672065	51114289	51114564	-	58	275	9	L1HS	"COLO1T,COLO1N"	45	245	L1HS				c16p49671927FS	CTAAGACTGTTATCCACCATTTCC	c16p49671927ES	GCAAGTTTTGCATTTATACATAATACC
chr16	52639496	52639970	54081995	54082469	+	401	474	26	L1HS	"COLO1T,COLO1N"	1497	367	"L1HS,A-rich"		"KIAA1752,FTO"		c16p52639733FS	TTGAATGTGCATGGAATACTTATC	c16p52639733ES	TCATTCTCAGTAAACTATCGCAAG
chr16	53785944	53786192	55228443	55228691	+	13	248	2	noL1	"COLO1T,COLO1N"	21	267	AluJb				c16p53786068FS	CATGTAGGTATTTGATCCATTTTG	c16p53786068ES	TAGTAAATTTTGAAACCTGGAAGC
chr16	54196192	54196436	55638691	55638935	+	3459	244	16	L1PA3	"COLO1T,COLO1N"	8334	572	"L1PA3,L1MEg"				c16p54196314FS	AAATTTTAGAGTGTTTCTTGGTGC	c16p54196314ES	GTGATGAGTTCATGTCCTTTGTAG
chr16	57431068	57431527	58873567	58874026	+	1979	459	26	L1HS	"COLO1T,COLO1N"	8706	470	L1HS				c16p57431297FS	CATAAACAGAATTACGACATGAGG	c16p57431297ES	TCATTCTCAGTAAACTATCGCAAG
chr16	57584726	57585258	59027225	59027757	-	9962	532	26	L1HS	"COLO1T,COLO1N"	38193	540	"T-rich,(TTTA)n,L1P2,L1HS,L1PA4"				c16p57584992FS	ACTGTTGGAAAAGTGCAGTATTAG	c16p57584992ES	TAATGCTAGATGACACGTTAGTGG
chr16	57592639	57592898	59035138	59035397	-	64	259	8	L1PA4	"COLO1T,COLO1N"	633	304	"L2c,L1PA4"				c16p57592768FS	CTTCTTGTCTTCTGTTTCCTTCTC	c16p57592768ES	ATGAAGCTGGAAACTATCATTCTC
chr16	58104240	58104625	59546739	59547124	+	1933	385	30	L1PA2	"COLO1T,COLO1N"	4689	425	"Tigger2,L1PA2"				c16p58104432FS	AGAGATCTCAAACCAATTCAAGAG	c16p58104432ES	TCATTCTCAGTAAACTATCGCAAG
chr16	58271558	58271891	59714057	59714390	-	4853	333	33	L1PA3	"COLO1T,COLO1N"	33732	457	"T-rich,L1PA3,MER96"				c16p58271724FS	GATTGATGGTTATCCAGCTTTTAC	c16p58271724ES	TCATTCTCAGTAAACTATCGCAAG
chr16	58786664	58787087	60229163	60229586	-	32	423	2	L1PA2	"COLO1T,COLO1N"	29	423	"LTR2,(TTTA)n,L1PA2"				c16p58786875FS	ACTTTCCTATCAATGGGTTTGTAG	c16p58786875ES	ATGCACACATATGTTTATTATGGC
chr16	59196783	59196998	60639282	60639497	-	191	215	10	L1PA3	"COLO1T,COLO1N"	521	393	"L1PA3,LTR1"				c16p59196890FS	TTGTGTTAACCAGCTCAGTTAGTC	c16p59196890ES	GCATGGTCCCTTTAAATGATAG
chr16	59471359	59471767	60913858	60914266	+	1637	408	13	L1HS	"COLO1T,COLO1N"	3825	736	"L1HS,MER65C,MLT1B,A-rich"	LINE:dbRIP			c16p59471563FS	CCTGAAGTAAATAATCAGGGTTTG	c16p59471563ES	ATGATGAGTTCATGTCCTTTGTAG
chr16	59533736	59534371	60976235	60976870	+	58	635	2	noL1	"COLO1T,COLO1N"	48	66	L1PA4				c16p59534053FS	TATATCTCCTAATGCTATCCCTCG	c16p59534053ES	TTTCTCTCTTTTGTACTCTGTCCC
chr16	60398880	60399012	61841379	61841511	+	517	132	7	L1PA2	"COLO1T,COLO1N"	2204	458	"L1PA2,(CAAA)n,LTR16B1"		CDH8		c16p60398946FS	ACAGGTTTGAAAGTAGATGGAGTC	c16p60398946ES	ATGATGAGTTCGTGTTCTTTGTAG
chr16	61631089	61631572	63073588	63074071	-	126	483	5	noL1	"COLO1T,COLO1N"	513	71	"AluSz6,AT_rich,(TTA)n"				c16p61631330FS	ACAAATTTAAATGTCATGTGATGG	c16p61631330ES	AGGGTGTGATCTTTAGAAAAACTG
chr16	61744449	61745020	63186948	63187519	+	19	571	9	L1PA3	"COLO1T,COLO1N"	33	571	"L1PA3,L1PA15,L1MEf"				c16p61744734FS	CCATCTAGTAGTCCACAGTGTCTG	c16p61744734ES	ATGATAGGCTGGATTAAGAAAATG
chr16	62037801	62037907	63480300	63480406	+	91	106	10	noL1	"COLO1T,COLO1N"	212	105	(A)n				c16p62037854FS	TTTCTTATTTCCTTTAAGCACTGAG	c16p62037854ES	AGTTTGGAATTATCAAGACAGCTC
chr16	62075258	62075623	63517757	63518122	-	15	365	2	noL1	"COLO1T,COLO1N"	3	165	L1PA4				c16p62075440FS	TTCTGTGAAGAAAGTCATTGGTAG	c16p62075440ES	TGCTGGATTATGTTTATTGATTTG
chr16	63628594	63628702	65071093	65071201	+	10	108	2	noL1	COLO1T	0	0	MIRb		CDH11		c16p63628648FS	TCCAATAATCAGTGTCTACACCAG	c16p63628648ES	ATAGGTAATTAGAGTCCAGCTCCC
chr16	64287365	64287733	65729864	65730232	+	15751	368	25	L1HS	"COLO1T,COLO1N"	136619	771	"L1HS,MIRb"				c16p64287549FS	TTTATTTAAAACCCTCAAGTTCCC	c16p64287549ES	GATGAGTTCATATCCTTTGTAGGG
chr16	65425625	65426158	66868124	66868657	+	30	533	4	noL1	"COLO1T,COLO1N"	213	400	"AluJr,AluYc,MER5A"				c16p65425891FS	GTATGGATAAGGTCCAAGAATTTG	c16p65425891ES	AACCAGATATATCAGACCAGGAAG
chr16	67174403	67174922	68616902	68617421	-	4615	519	41	L1HS	"COLO1T,COLO1N"	9867	500	"L1HS,(T)n"				c16p67174662FS	GTCACAGTAAGGCTGTAGATGGAG	c16p67174662ES	TAATGCTAGATGACACGTTAGTGG
chr16	69585549	69585689	71028048	71028188	+	18	140	5	noL1	"COLO1T,COLO1N"	203	272	(TGGA)n	"LINE:Ewing,Stewart"	HYDIN		c16p69585619FS	AATCTTTATTTTAAGGAGCTTCCC	c16p69585619ES	TGTACCACTTTACACTACCACCTG
chr16	69649976	69650211	71092475	71092710	+	18	235	2	L1PA2	"COLO1T,COLO1N"	12	236	"L1PA2,Tigger2a"		"DKFZp434I0850,HYDIN"		c16p69650093FS	TTAAACTAAAGAGCTTCAGCACAG	c16p69650093ES	TCATTCTCAGTAAACTATCGCAAG
chr16	72299125	72299377	73741624	73741876	+	3035	252	26	L1PA4	"COLO1T,COLO1N"	8809	238	"L1ME3C,L1PA4"				c16p72299251FS	ACATCAGCGGTGTATTCTTAATTG	c16p72299251ES	TCATTCTCAGCAAACTATCTCAAG
chr16	72415426	72415845	73857925	73858344	-	22	419	8	L1PA2	"COLO1T,COLO1N"	97	421	"L1PA2,AT_rich,MER103C"				c16p72415635FS	GTCTAAAAGGATAAGCAGGATTTG	c16p72415635ES	TCATTCTCAGTAAACTATCGCAAG
chr16	72643797	72644407	74086296	74086906	+	87	610	5	noL1	"COLO1T,COLO1N"	187	617	"AluJr,(A)n,AluSc5"				c16p72644102FS	TAAAGATACAAAAGTTAGCTGGGC	c16p72644102ES	AGGCAATAGTAGCAAATGTTATGG
chr16	74677985	74678102	76120484	76120601	-	10	117	3	L1PA4	"COLO1T,COLO1N"	13	138					c16p74678043FS	TTACTCTCAGCCTAAAGTATTGGG	c16p74678043ES	AGGATGAGTTCATGTCCTTTGTAG
chr16	75709344	75709526	77151843	77152025	-	975	182	5	noL1	"COLO1T,COLO1N"	11	65	MIRb				c16p75709435FS	TAGGTATTTCTCCTAATGCTCTCC	c16p75709435ES	ACACGGGGAGTTATTGTTTAATAG
chr16	77154699	77154985	78597198	78597484	-	12	286	4	noL1	"COLO1T,COLO1N"	3	66	"(CA)n,AT_rich,(T)n"		WWOX		c16p77154842FS	TCTGCACTTCAAGCTAAATATAATG	c16p77154842ES	ATCTACAATTTCACAGTGCAAGG
chr16	78347723	78347876	79790222	79790375	+	10	153	5	L1PA3	"COLO1T,COLO1N"	17	151	GA-rich				c16p78347799FS	GGGTGTTTTTAGAAACTGTGACTC	c16p78347799ES	GATGAGTTTATGTCCTTTGTAGGG
chr16	79373843	79373948	80816342	80816447	+	41	105	6	noL1	"COLO1T,COLO1N"	103	70	L1MB5		CDYL2		c16p79373895FS	TACCTGAATATGGTGTTAGCTGTG	c16p79373895ES	GAGAAAATCAAAGAAACCAAAGTC
chr16	80573527	80573707	82016026	82016206	+	68	180	4	L1PA3	"COLO1T,COLO1N"	442	469	"L1PA3,L1PA16"				c16p80573617FS	CCATTCAATATGATGTTAAAGCTG	c16p80573617ES	TCATTCTCAGTAAACTATCGCAAG
chr16	82234333	82234862	83676832	83677361	+	1044	529	16	L1HS	"COLO1T,COLO1N"	2037	603	"L1HS,MIRb"	LINE:dbRIP	CDH13		c16p82234597FS	AAGAGCTGGGTAGTACGTAAAGC	c16p82234597ES	TCATTCTCAGTAAACTATCGCAAG
chr16	83049558	83050216	84492057	84492715	+	1071	658	28	L1HS	"COLO1T,COLO1N"	13208	666	L1HS	LINE:dbRIP	"ATP2C2,KIAA0703"		c16p83049887FS	AAGAGAAGAGAGCCATTTACTCAC	c16p83049887ES	GAACAATGAGATCACATGGACAC
chr16	84468428	84469289	85910927	85911788	+	60	861	9	noL1	"COLO1T,COLO1N"	576	139	L1PA5				c16p84468858FS	GCACCCATTAACTCTTCATTTAAC	c16p84468858ES	CTCATCTGACAAAGGGCTAATATC
chr16	84830398	84830628	86272897	86273127	+	222	230	6	L1PA3	"COLO1T,COLO1N"	400	311	"L1PA3,AT_rich"				c16p84830513FS	GCATTAATTGATCACAAAGAACAC	c16p84830513ES	TGGAAATCATCATTCTCAGTAAAC
chr16	85269120	85269477	86711619	86711976	-	34	357	8	L1PA2	"COLO1T,COLO1N"	106	109	"T-rich,L1PA2,MLT1C"				c16p85269298FS	AGACTGTGCTCAACAAGACTTTC	c16p85269298ES	TCATTCTCAGTAAACTATCGCAAG
chr17	2298759	2298873	2352009	2352123	+	50	114	14	noL1	"COLO1T,COLO1N"	172	111	"SVA_E,(A)n,AluSc"		METT10D		c17p2298816FS	TGGTTTAGCTGTTCATTTATTTAGG	c17p2298816ES	CTGTGTGGATAGAAGTAGACATGG
chr17	9466007	9466488	9525282	9525763	+	2768	481	21	L1HS	"COLO1T,COLO1N"	11807	599	"L1HS,AluJo"		WDR16		c17p9466247FS	GGGTAAAACAAACATATTTTCAGG	c17p9466247ES	ACACCGCATATTCTCACTCATAG
chr17	11321191	11321336	11380466	11380611	-	78	145	2	L1PA2	"COLO1T,COLO1N"	12	272	L1MC1		FLJ45455		c17p11321263FS	TCCTTAATAATTTTCTGCCTGTTG	c17p11321263ES	TTCTCAGTAAACTATCGCAAGAAC
chr17	11704868	11705351	11764143	11764626	-	24	483	4	L1PA3	"COLO1T,COLO1N"	66	491	"HAL1,L1PA3,AluSp"		DNAH9		c17p11705109FS	TTTGAGACAGTTTCACTCTTCTTG	c17p11705109ES	GCTGCTATAAAGACATATGCACAC
chr17	12023469	12023573	12082744	12082848	-	24	104	3	L1PA4	"COLO1T,COLO1N"	142	159	L1MEf				c17p12023521FS	ATAGAGTGAAATTCCTTCAACTGC	c17p12023521ES	AACACCACATGTTCTCACTCATAG
chr17	12499779	12500243	12559054	12559518	+	2199	464	21	L1HS	"COLO1T,COLO1N"	8375	364	"L1HS,AT_rich"				c17p12500011FS	CAGAGCTTTCTAAGTCTCTTCACC	c17p12500011ES	TCATTCTCAGTAAACTATCGCAAG
chr17	21434398	21435063	21493805	21494470	+	29	665	7	L1PA3	"COLO1T,COLO1N"	138	969	"SVA_D,L1PA3,AT_rich"				c17p21434730FS	ATTATTAAGGAAGACGGCTATTTG	c17p21434730ES	AATGCTAAATGACAAGTTAATGGG
chr17	22176915	22177398	22252788	22253271	-	16	483	2	noL1	COLO1T	0	0	ALR/Alpha	LINE:Iskow			c17p22177156FS	ACAGAGTTGAAATTTCCTTTTGAG	c17p22177156ES	GTTTACTTAGCTGAAATTATCCCG
chr17	22365436	22365546	25341309	25341419	+	27	110	3	L1PA3	"COLO1T,COLO1N"	37	412	"L1PA3,L1MB4,AluSc"				c17p22365491FS	TTCTAATTTCTCCACTTCTTCACC	c17p22365491ES	GCAGCATTATTCACAATAACAAAG
chr17	25422063	25422864	28397937	28398738	+	590	801	15	noL1	"COLO1T,COLO1N"	1312	480	"AluSx,L1MA5"	"LINE:dbRIP,Ewing,Iskow"	EFCAB5		c17p25422463FS	TGGTGGCTAAATACTATTCCATTG	c17p25422463ES	TCAAAGACTTAAATGTAAGACCCC
chr17	25809976	25810650	28785850	28786524	-	10	674	4	noL1	"COLO1T,COLO1N"	17	675	"(TTTA)n,L1MB4,AluSz,L1PA4"		CPD		c17p25810313FS	ATACAAACATTAGCCAGGCTGTAG	c17p25810313ES	AAAACAGTGATACTGATGAAGCTG
chr17	26683137	26683781	29659011	29659655	-	2518	644	14	L1HS	"COLO1T,COLO1N"	16944	408	"L1HS,AluSg,(TGAA)n"	LINE:dbRIP	NF1		c17p26683459FS	TCAGGGCTATAGTGAGCTATCATC	c17p26683459ES	GAGGGATAGCATTGGGAGATATAC
chr17	28244256	28244543	31220143	31220430	+	22	287	3	L1PA2	"COLO1T,COLO1N"	23	742	"(CAAAA)n,L1PA2,AluSx1"				c17p28244399FS	TACTCTCAAGTCACCAGTCTCATC	c17p28244399ES	TCATTCTCAGTAAACTATCGCAAG
chr17	29216839	29217107	32192726	32192994	+	858	268	21	L1HS	"COLO1T,COLO1N"	9819	457	"L1HS,L1ME3"		ACCN1		c17p29216973FS	TTGTAAGTGTACCAAAATGAATGC	c17p29216973ES	AAAAATTCAACAGTACAGACATGC
chr17	29837676	29838084	32813563	32813971	+	522	408	21	noL1	"COLO1T,COLO1N"	137	521	"AluJb,L1MB2"	"LINE:dbRIP,Ewing,Iskow"			c17p29837880FS	AACCTTGAGGATTAACCAAGAAAC	c17p29837880ES	AACACTACTGAGGTGTGCACTTAC
chr17	30159105	30159509	33134992	33135396	-	2113	404	20	noL1	"COLO1T,COLO1N"	4375	432	"MSTA,MIRc"	"LINE:Beck,Ewing,Iskow"			c17p30159307FS	AGAATAATGCAAATGCCTAGAAAG	c17p30159307ES	TCGGCTAATTTTTGTATTTTTAGC
chr17	31296286	31296395	34272173	34272282	+	543	109	6	noL1	"COLO1T,COLO1N"	46	66	"AluSx,Zaphod"	"LINE:Ewing,Iskow"			c17p31296340FS	CATGATCTTTGACATTTTGCTAAC	c17p31296340ES	CTTAAGATCTGAGAGAGGATGGTC
chr17	33297849	33297950	36223736	36223837	-	17	101	5	noL1	"COLO1T,COLO1N"	36	108	(TG)n		"AK094896,BC132826"		c17p33297899FS	AGGAAATTTCAAAATGAGAATCAG	c17p33297899ES	GTTAAGGAGCCTAAAGTTTATCCC
chr17	34293518	34294213	37039992	37040687	-	19	695	5	noL1	"COLO1T,COLO1N"	51	696	"(T)n,AluSq"		LASP1		c17p34293865FS	ATCACTTTGCTTCCTAACACCTAC	c17p34293865ES	AACAAGAGCGAAACTCTGTCTC
chr17	34905144	34905246	37651618	37651720	-	11	102	6	noL1	"COLO1T,COLO1N"	35	73	"AluSz6,(T)n"		CRKRS		c17p34905195FS	CTGGCCCTTTCTTTCTTATTTATC	c17p34905195ES	TTTTCCATGGATGGTAGTATATTG
chr17	37017665	37018193	39764139	39764667	+	310	528	6	L1PA6	"COLO1T,COLO1N"	2282	73	"HAL1,L1PA6"				c17p37017929FS	TTTTAGTAGAGACAGGGTTTCACC	c17p37017929ES	TGAATATATTGAGAAGGTGGGAAG
chr17	37081507	37081673	39827981	39828147	+	14	166	4	L1PA4	"COLO1T,COLO1N"	156	244	"(TAA)n,L1PA4,THE1B"				c17p37081590FS	AAAACACTAAAAATTAGCCAGACG	c17p37081590ES	CAGGTAAAGAGAGAGAACTTGTCC
chr17	40710235	40710365	43354452	43354582	-	239	130	4	L1PA4	"COLO1T,COLO1N"	86	143	"AluSz6,L1PA4"		MAP3K14		c17p40710300FS	TTCATATTTTTAGTAGAGGCAGGG	c17p40710300ES	ATTAGTTCCAACTCAGGTTCAGAG
chr17	41690570	41690846	44334793	44335069	+	11	276	2	noL1	"COLO1T,COLO1N"	8	276	"AluJo,AT_rich,AluSx"				c17p41690708FS	TTGAGTCTTCAGATAAGAGTGCAG	c17p41690708ES	ATAAAGATTTAACACTAGGCTGGG
chr17	45321194	45321757	47966195	47966758	+	46	563	3	noL1	"COLO1T,COLO1N"	30	67	AluSx				c17p45321475FS	GTTCTTCCTGCTATCTTTTTCTCC	c17p45321475ES	TGTTTTACAGATGAGCAAACTGAG
chr17	48932041	48932516	51577042	51577517	-	704	475	20	L1PA3	"COLO1T,COLO1N"	3535	422	L1PA3				c17p48932278FS	GAAGTGAATTTGATTTGATGAGTG	c17p48932278ES	TCATTCTCAGTAAACTATCGCAAG
chr17	50062964	50063246	52707965	52708247	-	145	282	10	L1PA4	"COLO1T,COLO1N"	372	378	MLT1D				c17p50063105FS	TTCACTATGTTCTCTAACTGGCTC	c17p50063105ES	CAATAAGAAGAGGAAGAACTGACC
chr17	50940048	50940293	53585049	53585294	+	31	245	3	L1PA2	"COLO1T,COLO1N"	114	245	L1PA2				c17p50940170FS	TCTTAGAGGTAGAAAACAAGGCAC	c17p50940170ES	TCATTCTCAGTAAACTATCGCAAG
chr17	54374929	54375272	57020147	57020490	+	144	343	11	L1PA3	"COLO1T,COLO1N"	536	343	"AluSz6,L1PA3,FRAM"		"KIAA1072,PPM1E"		c17p54375100FS	TTTGGTTTTTGTTTTATTTGTGTG	c17p54375100ES	TAAGCATTGCCATTTTATATGTTC
chr17	56201900	56202597	58847118	58847815	-	35	697	2	noL1	"COLO1T,COLO1N"	81	67	"AluSx1,L1MA4A,AluSc5"		BCAS3		c17p56202248FS	AGGGAAGAACATAGTCCTTTGG	c17p56202248ES	TACAAAAATTAGCTAGGAGTGGTG
chr17	56437656	56437984	59082874	59083202	-	36	328	9	L1PA2	"COLO1T,COLO1N"	265	331	L1PA2		BCAS3		c17p56437820FS	ACGTACGTAGGTAAAGTCATAGGC	c17p56437820ES	TCATTCTCAGTAAACTATCGCAAG
chr17	62022634	62023214	64592172	64592752	-	26230	580	49	L1HS	"COLO1T,COLO1N"	78035	715	L1HS		PRKCA		c17p62022924FS	AAAAGGTTAAATCTATTACCACCG	c17p62022924ES	TAATGCTAGATGACACGTTAGTGG
chr17	62751451	62752001	65320989	65321539	+	67534	550	38	L1HS	"COLO1T,COLO1N"	88925	550	"(A)n,L1HS,LTR1D,HERV16-int,AluSc"				c17p62751726FS	TAAAAATACAAAAATTAGCTGGGC	c17p62751726ES	GTTTGGCCAGTAAAGAGTAAGAAG
chr17	64401392	64401520	66889797	66889925	-	44	128	3	L1PA2	"COLO1T,COLO1N"	70	68	L1PA2		ABCA8		c17p64401456FS	ATTCTGGTTCTAAACTTAAAGGGC	c17p64401456ES	TGACTCTCCTCTATCAGGAATCTC
chr17	65325899	65326094	67814304	67814499	+	33	195	2	L1PA3	"COLO1T,COLO1N"	163	524					c17p65325996FS	AGTTCTTATGCATGACTCTTCTCC	c17p65325996ES	ACACTGCATATTCTCACTCATAGG
chr17	65972673	65972862	68461078	68461267	+	1901	189	24	L1HS	"COLO1T,COLO1N"	5569	199	"L1HS,(A)n,Tigger3b"	LINE:dbRIP			c17p65972767FS	ACATTACTCATGTTTTTGGTGATG	c17p65972767ES	GATGAGTTCATATCCTTTGTAGGG
chr17	66052007	66052588	68540412	68540993	-	12509	581	46	L1HS	"COLO1T,COLO1N"	39085	397	"MLT1L,L1HS,AT_rich,(T)n"				c17p66052297FS	ACCTGCACTGTGTGTATTTCATAG	c17p66052297ES	TAATGCTAGATGACACGTTAGTGG
chr17	66859497	66859973	69347902	69348378	-	22	476	2	noL1	"COLO1T,COLO1N"	18	614	L1PA3				c17p66859735FS	TTTAAGTGTTTATTATGCTTCCCC	c17p66859735ES	TACCCAAAGGACTATAAATCATGC
chr17	69122477	69122739	71610882	71611144	+	21	262	7	L1PA17	"COLO1T,COLO1N"	283	74	"G-rich,L1PA17"				c17p69122608FS	TGACAACTTACTTTACTTCTGGGG	c17p69122608ES	ATTGGATTTACCTGCTTATACTCG
chr17	77761810	77762196	80168521	80168907	+	22	386	4	noL1	"COLO1T,COLO1N"	22	387	"AluSx1,L1MC4"		CCDC57		c17p77762003FS	TTCATATTACTGATTTTTGGCAAG	c17p77762003ES	TGCTAAAATTAGTGACAGAAGTATGG
chr18	98195	98542	108195	108542	-	1221	347	9	noL1	"COLO1T,COLO1N"	2596	390	BSR/Beta	"Alu:Hormozdiari,LINE:Iskow"			c18p98368FS	AACTCTTGTCTAGGCTCTGCTTAC	c18p98368ES	TATACAACAGTTACATCACCTGGG
chr18	359174	359447	369174	369447	-	10	273	3	L1HS	"COLO1T,COLO1N"	20	332	(TTTTTA)n		COLEC12		c18p359310FS	CAAAACAAAACACAAAAACAAAAC	c18p359310ES	AACCTAAAATTATAATCACGCCAC
chr18	531680	532288	541680	542288	+	75114	608	80	L1HS	"COLO1T,COLO1N"	221051	644	"MER45A,L1HS,AluSx1"				c18p531984FS	TATTTTTATTTGAGACGGTCTTGC	c18p531984ES	TAATGCTAGATGACACGTTAGTGG
chr18	825264	825640	835264	835640	-	346	376	3	noL1	"COLO1T,COLO1N"	7879	1578	"AluJb,L1PA2,MER5B"				c18p825452FS	CAGTACCTCAGTGGACTCATACAG	c18p825452ES	AGACAGAGTCTTGCTCTATCACC
chr18	825983	827153	835983	837153	-	3060	1170	28	L1HS	"COLO1T,COLO1N"	7879	1578	"AluSq2,L1HS,MER5B,AluYb8"				c18p826568FS	CAGAGGGATATAGCAGTGACAAAG	c18p826568ES	AATAATGAGATCACATGGACACAG
chr18	960543	960864	970543	970864	-	137	321	12	L1PA8	"COLO1T,COLO1N"	396	290	"L1PA8,L1PA3,(TTTA)n"				c18p960703FS	ATTCAGAGATTCGACTTCTTTCTG	c18p960703ES	AAAAACCAAACACCACATATTCTC
chr18	3729841	3730017	3739841	3740017	+	93	176	3	L1PA3	"COLO1T,COLO1N"	396	288			DLGAP1		c18p3729929FS	TATACATTATCCCAATTCTCAGGG	c18p3729929ES	TCATTCTCAGTAAACTATCGCAAG
chr18	4309912	4310080	4319912	4320080	-	466	168	5	noL1	COLO1T	0	0					c18p4309996FS	ATAAAAATTGACAAGAACAGAGGC	c18p4309996ES	GGCTGTGTTAAAGAGAACAAGAG
chr18	5322118	5322498	5332118	5332498	-	5242	380	25	L1HS	"COLO1T,COLO1N"	17947	568	"(TTTTA)n,L1HS"				c18p5322308FS	GGAGAATGGCTGTTAAATAGTGAC	c18p5322308ES	GATGAGTTCATATCCTTTGTAGGG
chr18	5670903	5671326	5680903	5681326	-	506	423	25	L1PA3	"COLO1T,COLO1N"	1097	424	"L1PA3,L2b,MLT2A1,(TTA)n"				c18p5671114FS	GCCAAAACTGAAGAACTTAGAGTC	c18p5671114ES	TGGAAATCATCATTCTCAGTAAAC
chr18	6821196	6821536	6831196	6831536	-	42	340	4	L1HS	"COLO1T,COLO1N"	60	122	"L1HS,L1MD,L1MC4"		ARHGAP28		c18p6821366FS	CTGTTATGAGCAATCTTGTGAAAG	c18p6821366ES	GCACAAAATATCAGAAAGGAAAAC
chr18	8026042	8026301	8036042	8036301	+	40	259	5	noL1	COLO1T	0	0	L3		PTPRM		c18p8026171FS	TTAATCTGTGTATAGCTGAGTGCC	c18p8026171ES	AAAGAAATAAACACAAACTGGAGG
chr18	8162257	8162722	8172257	8172722	-	28	465	7	noL1	"COLO1T,COLO1N"	83	466	"AT_rich,(A)n,MER5A"		PTPRM		c18p8162489FS	ATAAAGACATACCCGATACTGAGC	c18p8162489ES	ATTGTTTCATGCATCATCATACTC
chr18	8700458	8700939	8710458	8710939	-	41	481	7	L1PA2	"COLO1T,COLO1N"	195	488	"L1PA2,(T)n"		KIAA0802		c18p8700698FS	AAGTATTCAGAAATTCAGGTGAGC	c18p8700698ES	TGGAAATCATCATTCTCAGTAAAC
chr18	9258670	9258970	9268670	9268970	+	22	300	2	noL1	"COLO1T,COLO1N"	313	65	L1PA4		ANKRD12		c18p9258820FS	TTCTGTGAAGAAAGTCATTGGTAG	c18p9258820ES	ATCCTCAATAAAATACTGGCAAAC
chr18	9857650	9858103	9867650	9868103	-	86	453	6	L1PA8	"COLO1T,COLO1N"	146	449	"L1PA8,AluY,(TTTTC)n"				c18p9857876FS	GTTTCTCTGAACCTCAGTTACCTC	c18p9857876ES	AAACCCCGTCTCTACTAAAAATG
chr18	12481261	12481446	12491261	12491446	+	459	185	6	noL1	"COLO1T,COLO1N"	641	463	L1M2	"LINE:Beck,dbRIP,Ewing"	SPIRE1		c18p12481353FS	ATTGATTTTCCTTGTTTAATCCTG	c18p12481353ES	GTAGTTCTAGCCAGAGCAGTTAGG
chr18	13826324	13826786	13836324	13836786	+	61781	462	98	L1HS	"COLO1T,COLO1N"	265563	696	L1HS				c18p13826555FS	AAAGAACGTGAGAGAAAGAGGAC	c18p13826555ES	TCATTCTCAGTAAACTATGGCAAG
chr18	13965389	13965914	13975389	13975914	-	954165	525	106	L1HS	"COLO1T,COLO1N"	1333915	522	"(TCC)n,L1HS,(T)n"				c18p13965651FS	GTGGCATCCCTAGAAGACTAATAC	c18p13965651ES	TAATGCTAGATGACACGTTAGTGG
chr18	16766808	16767668	18512810	18513670	+	46	860	4	noL1	"COLO1T,COLO1N"	97	872	ALR/Alpha				c18p16767238FS	GTATATGAAGATATTCCCGTTTCC	c18p16767238ES	GATGTGTGTCCTCAACTAACAGAG
chr18	16768490	16769610	18514492	18515612	+	13	1120	5	noL1	"COLO1T,COLO1N"	67	1668	ALR/Alpha				c18p16769050FS	ATGCTTCTGTCTAGTTTTTATGGG	c18p16769050ES	CTTTGTGATATCTGCACTCAAGTC
chr18	16770558	16771930	18516560	18517932	-	331	1372	10	noL1	"COLO1T,COLO1N"	1795	1539	ALR/Alpha	Alu:Hormozdiari			c18p16771244FS	AAACACTCTTCTTGTAGTATCGGG	c18p16771244ES	CTCTGTTAGTTGAGGACACACATC
chr18	16772490	16773178	18518492	18519180	+	16	688	5	noL1	"COLO1T,COLO1N"	74	983	ALR/Alpha	Alu:Hormozdiari			c18p16772834FS	GTTGAACCTTTCTTTTTACAGAGC	c18p16772834ES	ATGCTTCTGTCTAGTTTTTATGGG
chr18	17572400	17572856	19318402	19318858	+	16	456	5	noL1	"COLO1T,COLO1N"	18	93	"L1P2,AluY"		MIB1		c18p17572628FS	TGATGGTAGTTTGTATTTCTGTGG	c18p17572628ES	CAAACAGTCTCTCAGACCATAGTG
chr18	20157053	20157559	21903055	21903561	-	26	506	6	L1HS	"COLO1T,COLO1N"	384	984	"L1HS,AluSg7,AluSz"	LINE:Iskow	OSBPL1A		c18p20157306FS	TACCAACCACAACAAAATAAAGTG	c18p20157306ES	TCATTCTCAGTAAACTATCGCAAG
chr18	20157973	20158585	21903975	21904587	+	107	612	8	noL1	"COLO1T,COLO1N"	871	1198	"L1HS,AT_rich,(A)n,AluSx3,AluSz"		OSBPL1A		c18p20158279FS	CTGCAACCTCTACCTCTAAGATTC	c18p20158279ES	AGTTTACTGAGAATGATGGTTTCC
chr18	21321337	21321859	23067339	23067861	+	4954	522	41	L1HS	"COLO1T,COLO1N"	18100	535	"L1HS,L2,A-rich"				c18p21321598FS	TGAAGATACCAGGAAAAGAGTAGC	c18p21321598ES	TCATTCTCAGTAAACTATCGCAAG
chr18	23119500	23119742	24865502	24865744	+	20	242	3	L1PA3	"COLO1T,COLO1N"	30	174	"L1PA3,(TC)n"				c18p23119621FS	ACATGGTAATGAAACTTTTCAAGG	c18p23119621ES	ATGATGAGTTCATGTCCTTTGTAG
chr18	28438970	28439684	30184972	30185686	-	685248	714	84	L1HS	"COLO1T,COLO1N"	1355834	752	"L1HS,L1MA3,AT_rich"				c18p28439327FS	ATGTTTCCTTTTTGATTTTCTGTC	c18p28439327ES	TGGGAGATATACCTAATGCTAGATG
chr18	28475711	28475875	30221713	30221877	+	92	164	4	L1PA3	"COLO1T,COLO1N"	417	164	L1MD1				c18p28475793FS	CTAAATACGTGGAAAGACACACTG	c18p28475793ES	GTTTATTTCTCTGCTAAAGCTTCG
chr18	32821414	32821741	34567416	34567743	+	161820	327	48	L1HS	"COLO1T,COLO1N"	332657	553	"L1HS,AT_rich,L1ME1"		KIAA1328		c18p32821577FS	CATTTAAAGCCTGTGTAATGTGTC	c18p32821577ES	TCATTCTCAGTAAACTATCGCAAG
chr18	32939416	32939916	34685418	34685918	+	17	500	5	noL1	"COLO1T,COLO1N"	39	73	"AluSx1,AluJr4"		KIAA1328		c18p32939666FS	GTATGTTACCTAGGAGTGGGACTG	c18p32939666ES	CTGTTATCCCACTACTTTGAGAGG
chr18	33659685	33660158	35405687	35406160	+	21881	473	46	L1HS	"COLO1T,COLO1N"	51861	834	"L1HS,AT_rich,L1ME3C"				c18p33659921FS	GAATTTTTGCTTCTTTTTGGTATG	c18p33659921ES	TCACTCTCAGTAAACTATCGCAAG
chr18	35693641	35694042	37439643	37440044	-	6769	401	27	L1HS	"COLO1T,COLO1N"	15521	402	"(TTTTA)n,L1HS"		AK309717		c18p35693841FS	TCTAGCACATGGAAAACAGTAAAC	c18p35693841ES	TCATTCTCAGTAAACTATCGCAAG
chr18	35764409	35764719	37510411	37510721	+	322	310	9	L1PA2	"COLO1T,COLO1N"	3651	1094	L1ME2				c18p35764564FS	ATGTCAAAGAGAAAAACGTTCAAG	c18p35764564ES	TCATTCTCAGTAAACTATCGCAAG
chr18	36682180	36682704	38428182	38428706	+	766	524	21	L1HS	"COLO1T,COLO1N"	1490	537	"L1HS,(A)n"				c18p36682442FS	GTTAAGTGACACAGTCAGGATTTG	c18p36682442ES	TCATTCTCAGTAAACTATCGCAAG
chr18	37005621	37005879	38751623	38751881	-	319	258	6	L1PA2	"COLO1T,COLO1N"	211	258					c18p37005750FS	AATAAATGGATAAGGATGTCTTGG	c18p37005750ES	GTGAAAGTTAATGAGAACACATGG
chr18	37614958	37615454	39360960	39361456	+	95	496	18	L1HS	"COLO1T,COLO1N"	303	584	"L1MA9,L1HS,AT_rich,(A)n,A-rich"				c18p37615206FS	GAAAGAGAAGGGAATACATTTTTG	c18p37615206ES	TCATTCTCAGTAAACTATCGCAAG
chr18	39286435	39286883	41032437	41032885	+	9469	448	63	L1HS	"COLO1T,COLO1N"	17706	489	"L1HS,(A)n,AluSq"	LINE:dbRIP			c18p39286659FS	TCTGAAACGTAAAAGCACAGATAG	c18p39286659ES	TCATTCTCAGTAAACTATCGCAAG
chr18	39752575	39753051	41498577	41499053	+	332	476	17	L1HS	"COLO1T,COLO1N"	2183	507	"AluSq2,L1HS,(A)n"				c18p39752813FS	TTTGTAAAATTGTCCACAATGAAG	c18p39752813ES	TCATTCTCAGTAAACTATCGCAAG
chr18	40913762	40914199	42659764	42660201	-	53373	437	46	L1HS	"COLO1T,COLO1N"	170742	462	"L1HS,Tigger2"				c18p40913980FS	TAAATTGCATATCGCAGTAAAAAG	c18p40913980ES	TCATTCTCAGTAAACTATCGCAAG
chr18	43446724	43447369	45192726	45193371	+	3461	645	35	L1HS	"COLO1T,COLO1N"	10036	562	"L1HS,AT_rich,AluSx"				c18p43447046FS	AATTGATGGAATCTTGAAACAGAC	c18p43447046ES	TGGGAGATATACCTAATGCTAGATG
chr18	45701594	45701698	47447596	47447700	-	57	104	7	noL1	"COLO1T,COLO1N"	224	77	(T)n		MYO5B		c18p45701646FS	AGTCTCAGGCTCTGACTTAATAGG	c18p45701646ES	TTTTTATCCTCCCTGAGAATTATG
chr18	45857243	45857576	47603245	47603578	+	14	333	2	noL1	"COLO1T,COLO1N"	10	89	"Charlie18a,AT_rich,(A)n"		MYO5B		c18p45857409FS	GCCTAATTTCTCTTAGAAAGGGAC	c18p45857409ES	TCAAATTCCTAGAAATGAGCAAAG
chr18	45931245	45931590	47677247	47677592	+	51	345	8	L1PA3	"COLO1T,COLO1N"	440	426			MYO5B		c18p45931417FS	ATCATGATCCTTCAAATTTAGACC	c18p45931417ES	TCATTCTCAGTAAACTATCGCAAG
chr18	46123415	46124373	47869417	47870375	-	4284	958	31	L1HS	"COLO1T,COLO1N"	22334	961	"L1HS,L1MCa,AluSx"				c18p46123894FS	ATCTGCTTTGCCTGAAATTAATAC	c18p46123894ES	AAACATACAAGAAGGGCAAAATAG
chr18	46165195	46165739	47911197	47911741	+	753	544	24	L1HS	"COLO1T,COLO1N"	2132	544	"L1HS,(A)n"	LINE:dbRIP	C18orf24	C18orf24.4	c18p46165467FS	TCTCTAGATCTCTCTATGAAGGGG	c18p46165467ES	CTGTTAAGGGGTTAGAACAATGAG
chr18	47469811	47470237	49215813	49216239	-	11600	426	26	noL1	"COLO1T,COLO1N"	23325	416	"AluJb,L1MC3"	"LINE:Ewing,Iskow"			c18p47470024FS	TTCTTTTAGGCTTTCTTAGCTGAC	c18p47470024ES	AAAGAGCAACATGCTATGTACTTG
chr18	47481006	47481711	49227008	49227713	-	53	705	3	L1PA5	"COLO1T,COLO1N"	95	66	"L1PA5,AluY"				c18p47481358FS	GACATGAACTCATCCTGTTTTATG	c18p47481358ES	GAAGCATATGAACAGACACTTCTC
chr18	48351194	48351747	50097196	50097749	-	2020	553	13	noL1	"COLO1T,COLO1N"	8040	543		"LINE:Ewing,Iskow,Stewart"	DCC		c18p48351470FS	TCACATTTGTAGAAACTGTTTTGTG	c18p48351470ES	AGAATACTGGGAAATAAGAGGGAC
chr18	48876526	48876875	50622528	50622877	+	106	349	6	L1PA6	"COLO1T,COLO1N"	525	453	"AluJr4,L1PA6"		DCC		c18p48876700FS	TTCCTTCTATTTTGCTTCTCTCTC	c18p48876700ES	AATGAGCATGAATACACAGAAATG
chr18	50016425	50016883	51762427	51762885	-	50051	458	53	noL1	"COLO1T,COLO1N"	165171	603	HAL1	"LINE:dbRIP,Ewing,Iskow"			c18p50016654FS	TTACTCATGGATACTTTGGTGTTG	c18p50016654ES	TTGTTCTTTTCTAACATTGTCTGG
chr18	50210894	50211379	51956896	51957381	+	53274	485	76	L1HS	"COLO1T,COLO1N"	101805	421	L1HS	LINE:dbRIP			c18p50211136FS	CATATTTGAAGAATGCCTAAAAGG	c18p50211136ES	TCATTCTCAGTAAACTATCGCAAG
chr18	51190487	51191003	53039489	53040005	+	11	516	4	noL1	"COLO1T,COLO1N"	7	65	HAL1		TCF4		c18p51190745FS	TTTCTTGTGAAAGTTATTCTTGCC	c18p51190745ES	ATGTCATAAATGATACTGGGTGTG
chr18	52344454	52344705	54193456	54193707	+	12	251	2	noL1	"COLO1T,COLO1N"	11	251	L1PA3				c18p52344579FS	AAGTTTTTAACTTCTTTGCCTTTG	c18p52344579ES	AGCAGTCTGAGATCAAACTACAAG
chr18	52631373	52631931	54480375	54480933	+	1830	558	16	L1HS	"COLO1T,COLO1N"	3495	557	"L1HS,MLT2B3,L1MD"		"WDR7,KIAA0541"		c18p52631652FS	TACATCTCAAAGTAACTGAGGCTG	c18p52631652ES	CTTAATCATAGGTGGGAATTGAAC
chr18	54525573	54525708	56374593	56374728	-	110	135	5	L1PA7	"COLO1T,COLO1N"	92	67	L1PA7		MALT1		c18p54525640FS	TTTTTCTTCTACTTTCTTTCTGGG	c18p54525640ES	CTATTCTAGTAGCCATTACGAGGG
chr18	55221780	55222195	57070800	57071215	-	662	415	20	L1PA2	"COLO1T,COLO1N"	2397	400	"L1PA2,L1MC4a"				c18p55221987FS	GAATCTTGGTAAACTGGACACTTC	c18p55221987ES	TCATTCTCAGTAAACTATCGCAAG
chr18	55835669	55835958	57684689	57684978	-	172	289	5	L1PA3	"COLO1T,COLO1N"	367	471	L1PA3				c18p55835813FS	TTCCCAGATAGAGTTTTCACTTTC	c18p55835813ES	TCATTCTCAGTAAACTATCGCAAG
chr18	56322785	56323258	58171805	58172278	-	22101	473	39	L1HS	"COLO1T,COLO1N"	134393	477	L1HS				c18p56323021FS	AGGGATTCTGATACTTTCTCAGTG	c18p56323021ES	ACAATGTACATCTGCATCATTCTC
chr18	57722022	57722406	59571042	59571426	+	69899	384	40	L1HS	"COLO1T,COLO1N"	293782	395	"L1HS,MLT1B"				c18p57722214FS	ACATCAGTCCTACAGGATTAGAGC	c18p57722214ES	TAATCCATCTTGAATTGATTTTTG
chr18	57914173	57914788	59763193	59763808	-	3057	615	15	L1HS	"COLO1T,COLO1N"	4696	973	"L1HS,AluSq2"		PIGN		c18p57914480FS	GACATCAATGAAAGAAGTATGCTG	c18p57914480ES	AAGGGATAGCATTGGGAGATATAC
chr18	58257464	58257579	60106484	60106599	-	90	115	5	L1PA3	"COLO1T,COLO1N"	851	159	L1PA3				c18p58257521FS	ATATTACAGGTGAGGAAACTGAGG	c18p58257521ES	TATACACCGTGGAATACTATGCAG
chr18	58730487	58730968	60579507	60579988	+	5013	481	20	L1HS	"COLO1T,COLO1N"	16190	489	"L1HS,AT_rich,AluSz"		PHLPP		c18p58730727FS	TAATTCTTGAAAATACATCTGGGC	c18p58730727ES	TCATTCTCAGTAAACTATCGCAAG
chr18	59180754	59181475	61029774	61030495	-	44323	721	50	L1HS	"COLO1T,COLO1N"	93097	727	L1HS		KDSR	KDSR.8	c18p59181114FS	TCAGGATCTGCAGTATCTATGATG	c18p59181114ES	GAGGGATAGCATTGGGAGATATAC
chr18	59552719	59552853	61401739	61401873	+	26	134	4	L1PA3	"COLO1T,COLO1N"	237	135	"L1PA3,L1MA2"				c18p59552786FS	TACTTCTGCTCTTTCTTGGTTTTC	c18p59552786ES	CAAATGTCCAACAATGATAGACTG
chr18	59684571	59685193	61533591	61534213	+	26385	622	23	L1HS	"COLO1T,COLO1N"	65716	728	"L1HS,MIR"				c18p59684882FS	CACAGTATGAAATTGACCTCCC	c18p59684882ES	TAATGCTAGATGACACGTTAGTGG
chr18	61596741	61597580	63445761	63446600	-	1801	839	23	L1HS	"COLO1T,COLO1N"	8859	838	"L1HS,MER96,(T)n"		CDH7		c18p61597160FS	GAAAAATGGATAATGAAAGTTTGC	c18p61597160ES	TGGGAGATATACCTAATGCTAGATG
chr18	65749584	65749828	67598604	67598848	+	1253	244	22	L1PA4	"COLO1T,COLO1N"	2069	264	"L1MEd,L1PA4"		CD226		c18p65749706FS	TTGCGATAAAATAAGTTTCTGTTG	c18p65749706ES	CATTCTCAGCAAACTATCACAAAG
chr18	65936272	65936495	67785292	67785515	+	21	223	4	noL1	"COLO1T,COLO1N"	147	103	L1M2		"DKFZp434G145,RTTN"		c18p65936383FS	ATTTTCTTTTCTTGTAGTTCCCAC	c18p65936383ES	AAACTAGAAGTCACCAAAAGAAGG
chr18	66503080	66503464	68352100	68352484	-	25	384	7	L1HS	"COLO1T,COLO1N"	507	528	"L1HS,(T)n"				c18p66503272FS	ATACCCAGTGATTCTAAATGCAAC	c18p66503272ES	ATGATGAGTTCATGTCCTTTGTAG
chr18	66564315	66564750	68413335	68413770	-	3206	435	19	L1HS	"COLO1T,COLO1N"	13614	454	ERV3-16A3_I-int				c18p66564532FS	TGCAGAAGGATAATAAAGAATTGG	c18p66564532ES	TGGGAGATATACCTAATGCTAGATG
chr18	66722706	66722811	68571726	68571831	-	24	105	2	noL1	"COLO1T,COLO1N"	44	105	MLT1J				c18p66722758FS	TGTCAGGATTGACTCCTTCTTATC	c18p66722758ES	AACATCTAAAACCCAGAACACTTC
chr18	67175656	67175974	69024676	69024994	+	7795	318	18	L1HS	"COLO1T,COLO1N"	26333	480	"L1HS,L1M5"				c18p67175815FS	TAATTTACCATAAGGAATTGGAGC	c18p67175815ES	GATGAGTTCATATCCTTTGTAGGG
chr18	67473272	67473899	69322292	69322919	-	118259	627	82	L1HS	"COLO1T,COLO1N"	456613	458	"L1MA8,L2a,L1HS"				c18p67473585FS	TGTATTGTGTTTGTAAGACTTGCC	c18p67473585ES	GAACAATGAGATCACATGGACAC
chr18	67768355	67768517	69617375	69617537	+	454	162	4	noL1	"COLO1T,COLO1N"	34131	509		"LINE:dbRIP,Ewing,Iskow,Stewart"			c18p67768436FS	TTTTATGTTACCAGAGTGCTTGTG	c18p67768436ES	TACAGCAGAAAGTGCTTATCAAAC
chr18	68205952	68206330	70054972	70055350	+	56	378	3	L1HS	"COLO1T,COLO1N"	217	401	"(TAAAAA)n,L1HS"				c18p68206141FS	TAAAAGGAAAAGTGGAGTAGGAAG	c18p68206141ES	AACCAGTAACTATCCCTCACAAAC
chr18	70840273	70840734	72711285	72711746	+	1147	461	9	L1HS	"COLO1T,COLO1N"	263	561	L1HS	LINE:dbRIP	ZNF407		c18p70840503FS	GAGTTCTTTACATTGCCTTTTCTG	c18p70840503ES	TCATTCTCAGTAAACTATCGCAAG
chr18	71693767	71694454	73564779	73565466	+	440	687	12	L1HS	"COLO1T,COLO1N"	2715	687	"L1MA8,L1HS,AT_rich"				c18p71694110FS	GATATTTGGAGGATATGTCTCAGC	c18p71694110ES	TAGATGATACATTAGTGGGTGCAG
chr18	72485035	72485198	74356047	74356210	+	11	163	2	L1PA4	"COLO1T,COLO1N"	9	163	MLT1L				c18p72485116FS	AAATCCGAGGTGACTAGAGACTG	c18p72485116ES	AATGTTAAATGGAGAGTTAATGGG
chr18	72643576	72643934	74514588	74514946	-	213	358	3	noL1	"COLO1T,COLO1N"	316	92	"(A)n,AluSz"	"LINE:Ewing,Iskow"			c18p72643755FS	AATATTAAGTAATTGGCACTTGGC	c18p72643755ES	ATTATGCCCACAATTTTCTAAATG
chr18	73167090	73167202	75038102	75038214	-	42	112	3	L1PA4	"COLO1T,COLO1N"	62	68	L1MA9				c18p73167146FS	GTCCAGAAAATTAACATACCCATC	c18p73167146ES	ATGATGAGTTCATGTCCTTTGTAG
chr18	74977867	74978483	76876879	76877495	+	17758	616	43	L1HS	"COLO1T,COLO1N"	79540	635	"L2a,L1HS,AT_rich"		"DKFZp434A042,ATP9B"		c18p74978175FS	TATATACACAAACATACGGCTTCC	c18p74978175ES	TAATGCTAGATGACACGTTAGTGG
chr19	7239621	7239984	7288621	7288984	+	17	363	7	noL1	"COLO1T,COLO1N"	59	363	"AluJr,(A)n,AluSz"		INSR		c19p7239802FS	AGTTAATCTCTCATCTCCCAGTTG	c19p7239802ES	CTGTGATCCTAGTTTCTCAGAAGG
chr19	9108792	9108899	9247792	9247899	+	41	107	7	L1PA2	"COLO1T,COLO1N"	164	591	AluSq2				c19p9108845FS	TCTATTTTTATGCCAGTATCATGC	c19p9108845ES	GCACAATTGTCCTTGTTAAGAATC
chr19	10431821	10432507	10570821	10571507	+	17	686	3	noL1	"COLO1T,COLO1N"	12	65	"AluSx,AluSq,AluSx3"		PDE4A		c19p10432164FS	TGTTAGAATAACAGAGTTGAAGCC	c19p10432164ES	TATTTTTAGTAGAGATGGCGTTTC
chr19	15034542	15034922	15173542	15173922	-	216	380	9	L1PA3	"COLO1T,COLO1N"	1260	454	"L1PA3,AluJo"				c19p15034732FS	CTCTTTAAGAAGAGGACAAACAGC	c19p15034732ES	TACAAAGAACTCTAAACTCGGGTC
chr19	15686186	15686554	15825186	15825554	+	2786	368	14	L1HS	"COLO1T,COLO1N"	9086	412	"FLAM_C,L1HS,(A)n,MSTA"				c19p15686370FS	AATCTCATGTTGAATTGTAATCCC	c19p15686370ES	TCATTCTCAGTAAACTATCGCAAG
chr19	16925103	16925496	17064103	17064496	+	31	393	2	noL1	"COLO1T,COLO1N"	48	65	"L1MB3,AluJo"		CPAMD8		c19p16925299FS	AATGTCTATTCAAGTAATTTGCCC	c19p16925299ES	AGACCAATGGAATCAAATAGAGAG
chr19	22866367	22866692	23074527	23074852	-	90	325	6	L1PA3	"COLO1T,COLO1N"	656	426	"AluY,L1MC4a"				c19p22866529FS	AATTTTATGAACAGTCTTGCTTCC	c19p22866529ES	AATGCTAAATGACAAGTTAATGGG
chr19	23969965	23970587	24178125	24178747	+	20	622	4	noL1	"COLO1T,COLO1N"	36	66	AT_rich				c19p23970276FS	CATATCTTAGGTCTACCAGATGGC	c19p23970276ES	AAGAAAAATAACAGCAAGTCATCC
chr19	24393972	24394073	24602132	24602233	-	33769	101	20	noL1	"COLO1T,COLO1N"	126373	267	ALR/Alpha	LINE:Ewing			c19p24394022FS	AGTTTGGAAACACTCCTTTTGTAG	c19p24394022ES	AAAAGAAAGGTTCAACTCTGTGAG
chr19	32560401	32560945	27868561	27869105	+	241	544	13	noL1	"COLO1T,COLO1N"	907	544	ALR/Alpha	LINE:Iskow			c19p32560673FS	TCACAAAGTATTTTCTCACAATGC	c19p32560673ES	AGACAATCTTTTGGTAGAATTTGC
chr19	32648871	32649444	27957031	27957604	+	143	573	8	L1PA3	"COLO1T,COLO1N"	330	577	"L1PA3,L1PA4"				c19p32649157FS	CTTGTTTATTAGTCTTGCTAGCGG	c19p32649157ES	TAGACTGGATTAAGAAAATGTGGC
chr19	33945711	33946016	29253871	29254176	+	20	305	6	L1PA2	"COLO1T,COLO1N"	81	383	"L1PA2,L1PA15"				c19p33945863FS	TTCTGATTCTAACTTTCACCCTTC	c19p33945863ES	ATGATGAGTTCATGTCCTTTGTAG
chr19	35323401	35323943	30631561	30632103	-	41273	542	68	L1HS	"COLO1T,COLO1N"	85296	544	"L1HS,AluSq2,(T)n"				c19p35323672FS	CACCTTATTTATAAAGCTTGCTGG	c19p35323672ES	ACACCGCATATTCTCACTCATAG
chr19	35709981	35710474	31018141	31018634	-	47	493	5	noL1	"COLO1T,COLO1N"	35	73	"AT_rich,(T)n"		ZNF536		c19p35710227FS	GTTCAAGCGATTCTCTTATCTCAG	c19p35710227ES	TCTTTTCAGGAGCAAGATAATACC
chr19	36837236	36837753	32145396	32145913	+	408	517	17	L1HS	"COLO1T,COLO1N"	836	697	"L1PA8,L1HS,L1ME5"				c19p36837494FS	AACCTTTTGTTGACTTTCTCTCAC	c19p36837494ES	TCATTCTCAGTAAACTATCGCAAG
chr19	37769829	37770297	33077989	33078457	-	186	468	8	L1PA3	"COLO1T,COLO1N"	1235	468	L1PA3		"PDCD5,TFAR19"	"PDCD5.L,TFAR19.L"	c19p37770063FS	TTTTCTGGTTCTCCTAGGTATCAG	c19p37770063ES	TCATTCTCAGTAAACTATCGCAAG
chr19	39798184	39798716	35106344	35106876	-	79	532	2	noL1	"COLO1T,COLO1N"	172	538	"L1MA9,L1PA3,L1MA5"		AX748165		c19p39798450FS	TCTCACTGAATTAGGAGAAGTTCC	c19p39798450ES	CCCAAAGGACTATAAATTATGCTG
chr19	41424183	41424540	36732343	36732700	+	12	357	2	noL1	"COLO1T,COLO1N"	19	357	"AluSq2,AluSq"				c19p41424361FS	TCTAAATATTTTCTCCCATTCTGC	c19p41424361ES	GAATGCCAAACTTATTTAATGGAG
chr19	44645001	44645373	39953161	39953533	-	12	372	2	noL1	"COLO1T,COLO1N"	16	65	"AluSx1,AluSq2,L1MB7"		SUPT5H		c19p44645187FS	CAAAAATAAACCGATACCCATTAG	c19p44645187ES	CTAAAAATACAAAAATTAAGGCCG
chr19	46166415	46166721	41474575	41474881	+	253	306	11	L1PA4	"COLO1T,COLO1N"	1618	341	L1P2		CYP2A7		c19p46166568FS	CTCGAAGAAAACAGAATTTAAACC	c19p46166568ES	CTCACTTATAGGTGGGAATTGAAC
chr19	47873623	47873834	43181783	43181994	-	59	211	4	L1PA7	"COLO1T,COLO1N"	35	206	L1PA7				c19p47873728FS	CTCCCTCTTTCACTTACAAGTACC	c19p47873728ES	AAACTAACACAGGAACAGAAAACC
chr19	48248545	48249073	43556705	43557233	+	16686	528	28	L1HS	"COLO1T,COLO1N"	27824	526	"AluJb,L1HS,(A)n"		"PSG6,PSG2"		c19p48248809FS	TACAACACCTTCAATGCACTCTAC	c19p48248809ES	TCATTCTCAGTAAACTATCGCAAG
chr19	56867449	56867817	52175637	52176005	-	146	368	12	L1HS	"COLO1T,COLO1N"	455	367	"MSTB1,L1HS"	LINE:dbRIP			c19p56867633FS	TTTAGACTCCCCAGAGGTTTATC	c19p56867633ES	GATGAGTTCATATCCTTTGTAGGG
chr19	59782351	59783515	55090539	55091703	-	85150	1164	73	L1HS	"COLO1T,COLO1N"	266378	1306	"L1HS,L1PA6"		"LILRA2,LIR-7"		c19p59782933FS	TTTTCTTCTAGGGTTTTTATGGTG	c19p59782933ES	ATCACGCAAGAGAAAGAAATAAAG
chr19	61031613	61032063	56339801	56340251	+	189	450	6	L1PA2	"COLO1T,COLO1N"	947	514			"PYPAF6,NLRP11"		c19p61031838FS	TGTTTTACACCAACATTTCATACC	c19p61031838ES	AACACTGCATGTTCTCACTCATAG
chr19	63278539	63279095	58586727	58587283	+	83	556	7	noL1	"COLO1T,COLO1N"	192	559	"(CA)n,AluJo,AluSz,MIRc"				c19p63278817FS	TGTAGTCTCAGCTACTAAGGAGGC	c19p63278817ES	AACATGGTGAAATCCTGTCTCTAC
chr2	594906	595302	604906	605302	-	14	396	2	noL1	COLO1T	0	0	(CA)n				c2p595104FS	TGTGCACACAGATCCTAAACTG	c2p595104ES	GTCTGATGTGTGTGTGGAGTAGAG
chr2	978460	978817	988460	988817	-	14022	357	24	L1HS	"COLO1T,COLO1N"	39008	460	"L1HS,L1MB7"		SNTG2		c2p978638FS	GAATAAATTACCATCAACTGACCC	c2p978638ES	ATGTGCTACAATGGAATGTATCTG
chr2	1166899	1167243	1176899	1177243	+	37	344	6	L1PA3	"COLO1T,COLO1N"	82	334	L1PA3		SNTG2		c2p1167071FS	TAAACTACGTGAACCATACTCAGG	c2p1167071ES	AAAAAGCAAACACCACATATTCTC
chr2	2242136	2242751	2263129	2263744	+	77	615	10	L1HS	"COLO1T,COLO1N"	2645	615	"L1HS,MIRc"	LINE:dbRIP	MYT1L		c2p2242443FS	TCTCTCTGTAATGTAATCTCCGTG	c2p2242443ES	TAATGCTAGATGACACGTTAGTGG
chr2	3623013	3623152	3645138	3645277	-	11	139	2	noL1	COLO1T	0	0			COLEC11		c2p3623082FS	GTCAGTGAATGAATGGAGTGAAG	c2p3623082ES	TAAAAATACAAAAATTAGCTGGGC
chr2	5705957	5706206	5788506	5788755	-	20	249	6	noL1	"COLO1T,COLO1N"	72	73	AluY				c2p5706081FS	ACTAGGATTGGTGGCTTTATACTG	c2p5706081ES	CTAGCTCTTTATTCCATTTGGTTC
chr2	11053120	11053724	11135669	11136273	-	273053	604	87	L1HS	"COLO1T,COLO1N"	889808	734	L1HS				c2p11053422FS	CTAGAGTCTTGATCTGCCATTACC	c2p11053422ES	GAGGGATAGCATTGGGAGATATAC
chr2	11938927	11939339	12021476	12021888	-	45	412	3	L1PA4	"COLO1T,COLO1N"	178	695	L1PA4				c2p11939133FS	TTTAATATTCACAACAACCCTGTG	c2p11939133ES	ACTAGAAATACCATTTGATCCAGC
chr2	12403325	12403786	12485874	12486335	-	5391	461	31	L1HS	"COLO1T,COLO1N"	25094	478	"L1M4c,L1HS,AT_rich"		AK001558		c2p12403555FS	AAAAGTATGAAAAGTGGAGTGACG	c2p12403555ES	TCATTCTCAGTAAACTATCGCAAG
chr2	12846790	12847081	12929339	12929630	-	243	291	5	L1PA4	"COLO1T,COLO1N"	973	292	L1PA4				c2p12846935FS	TAAAATGCCTCATGTTGTCATATC	c2p12846935ES	GATGAGTTAATGTCCTTTGTAGGG
chr2	12985334	12985750	13067883	13068299	+	567	416	12	L1HS	"COLO1T,COLO1N"	1337	428	"L1HS,AT_rich,(A)n,L2c,MIR3"				c2p12985542FS	TCCACTGTCTTGGTTCTACTAATG	c2p12985542ES	TCATTCTCAGTAAACTATCGCAAG
chr2	13100706	13101039	13183255	13183588	+	7910	333	31	noL1	"COLO1T,COLO1N"	25944	332	L1PA8A	"LINE:Ewing,Iskow"			c2p13100872FS	CTCTGATGGTTGTTTGTATTTCTG	c2p13100872ES	ACAAAAAGACTTAGACTCCCACAC
chr2	14296401	14296579	14378950	14379128	-	17	178	6	L1PA4	"COLO1T,COLO1N"	50	237	"L1PA4,MSTB"		BC035112		c2p14296490FS	CTGTTACAAATGCACAAACTCTTC	c2p14296490ES	TTGGTGAATACATTGGTTGACTAC
chr2	15461454	15462139	15544003	15544688	-	35	685	3	noL1	"COLO1T,COLO1N"	122	687	"MIR,AluSx1,(TG)n,FLAM_C"		"NBAS,NAG"		c2p15461796FS	AACTGGTAAAATAGGAACAAGCTG	c2p15461796ES	AACATGGTGAAAGTCCATCTCTAC
chr2	16638219	16638504	16774738	16775023	-	474	285	9	L1HS	"COLO1T,COLO1N"	323	270	"L1HS,AT_rich"		FAM49A		c2p16638361FS	GATATTCAGGGAATCCAATAAATG	c2p16638361ES	GATGAGTTCATATCCTTTGTAGGG
chr2	16920476	16920771	17056995	17057290	-	33	295	4	L1PA3	"COLO1T,COLO1N"	223	296	"L1PA3,(TTA)n,LTR78"				c2p16920623FS	ATGTTTACAGCTACTTCCCTTCTC	c2p16920623ES	AACACTGCATGTTCTCACTCATAG
chr2	23044067	23044520	23190562	23191015	-	31277	453	57	noL1	"COLO1T,COLO1N"	86373	483	"L2a,MER45A,THE1C"	"LINE:Beck,dbRIP,Ewing,Iskow,Stewart"			c2p23044293FS	AGTCTGTATAAGCACAGAGAGTGG	c2p23044293ES	ATGAGATCTGATAGTTTTATCGGG
chr2	23420902	23421018	23567397	23567513	-	98	116	7	noL1	"COLO1T,COLO1N"	245	108	A-rich				c2p23420960FS	CAGGTAGCTAAACAAAAATGATCC	c2p23420960ES	ACAGTAAGTAGATCCAGGTTCAGG
chr2	24650302	24650489	24796798	24796985	+	35	187	4	noL1	"COLO1T,COLO1N"	169	179	L1M5	LINE:Ewing	"PAX3/NCOA1 fusion,NCOA1"		c2p24650395FS	ATATTAATTGGGCATATTTCCATC	c2p24650395ES	TTAAGTTGATTTTTCCAGTTTTCC
chr2	26130374	26130474	26276870	26276970	-	11	100	4	noL1	"COLO1T,COLO1N"	24	100	"T-rich,AluSx1"		RAB10		c2p26130424FS	GTGGGAGTATTGTTCATCTACCTC	c2p26130424ES	CCCACATTAAAATATGCAAAAAG
chr2	26900688	26900902	27047184	27047398	+	34	214	4	noL1	"COLO1T,COLO1N"	71	214	"AT_rich,MER31-int"				c2p26900795FS	TATTTTCAGTAGAGATGGGGTTTC	c2p26900795ES	CCTCTTTCATGCCTGTAATCC
chr2	29905648	29905802	30052144	30052298	+	14	154	3	L1PA4	"COLO1T,COLO1N"	25	163	L1PA4		ALK		c2p29905725FS	GGTGATTTTGGATTTTTCTAACAG	c2p29905725ES	ACATGTATGTTTATTGTGGCACTC
chr2	31655692	31656168	31802188	31802664	+	9454	476	27	L1HS	"COLO1T,COLO1N"	16352	618	"L2a,L1HS,(A)n"		SRD5A2		c2p31655930FS	GCTAAGACAGAGAATAAGACGGAG	c2p31655930ES	TCATTCTCAGTAAACTATCGCAAG
chr2	31831765	31832056	31978261	31978552	+	18	291	3	L1PA5	"COLO1T,COLO1N"	8	291	"L1PB4,L1PA5"				c2p31831910FS	GGACACTTAGGTTGCTTCTAAATC	c2p31831910ES	AACTAGAAATACCATTTGACCCAG
chr2	32945286	32945699	33091782	33092195	-	2311	413	132	L1PA16	"COLO1T,COLO1N"	7495	420	(T)n	Alu:Hormozdiari	"AK095182,BC040883"		c2p32945492FS	no primer	c2p32945492ES	no primer
chr2	34641223	34641519	34787719	34788015	+	15	296	3	noL1	"COLO1T,COLO1N"	28	393					c2p34641371FS	AGAAGATGAAATCCATCAGAAAAG	c2p34641371ES	TTGTCCTACAAAAGATAATAGCCC
chr2	34655025	34655495	34801521	34801991	+	9519	470	34	L1HS	"COLO1T,COLO1N"	42761	480	"MER110A,L1HS"	LINE:dbRIP			c2p34655260FS	AGGACTGGCTGAGAATAATGATAG	c2p34655260ES	TCATTCTCAGTAAACTATCGCAAG
chr2	34898642	34898897	35045138	35045393	+	1568	255	23	L1HS	"COLO1T,COLO1N"	7650	648	"L1HS,THE1D"				c2p34898769FS	TTTTCAGGAGGCAACTTAATTATC	c2p34898769ES	TCATTCTCAGTAAACTATCGCAAG
chr2	35732838	35732982	35879334	35879478	+	688	144	5	noL1	"COLO1T,COLO1N"	1666	166	ERV3-16A3_I-int	"LINE:Ewing,Iskow,Stewart"			c2p35732910FS	ATTTTCAGGATTTTGATCTTTCAG	c2p35732910ES	TGTAAGTATTCCATGGTCTGTGTC
chr2	36192814	36193227	36339310	36339723	-	246	413	18	L1HS	"COLO1T,COLO1N"	944	380	"L1ME4a,L4,L1HS"				c2p36193020FS	AAGTACTTTGTTTCTTACCATCGC	c2p36193020ES	TCATTCTCAGTAAACTATCGCAAG
chr2	36234836	36235014	36381332	36381510	+	1029	178	8	L1PA11	"COLO1T,COLO1N"	4445	177	L2c	"LINE:Ewing,Stewart"			c2p36234925FS	TTTACCTATGTAACAAACCTGCAC	c2p36234925ES	AACTAATTAGGTCTTGACCAGCAC
chr2	36279009	36279336	36425505	36425832	-	773	327	17	L1PA4	"COLO1T,COLO1N"	3206	388	L3				c2p36279172FS	TAGCAATTGGAAATGAATACAATG	c2p36279172ES	AAATCATCATTCTCAGCAAACTATC
chr2	36423243	36423775	36569739	36570271	-	524	532	23	L1PA16	"COLO1T,COLO1N"	1612	448	"AluSq2,AluYf4,L1PA16"	"LINE:Beck,dbRIP,Ewing,Iskow"			c2p36423509FS	TTTTAGTAGAGACAGGGTTTCACC	c2p36423509ES	AAACTGGCCTAAAGTGATAAATTG
chr2	37282876	37283354	37429372	37429850	+	37	478	6	noL1	"COLO1T,COLO1N"	74	475	AluSz		"CEBPZ,BC017652,AK001814"	"AK001814.L,BC017652.L"	c2p37283115FS	TTTGTATCTGCTGAAGAGGTAAGG	c2p37283115ES	TCAAAAAGAAATGACTAAGGAAGG
chr2	38142886	38143194	38289382	38289690	-	83	308	11	L1PA4	"COLO1T,COLO1N"	1269	371	L1MD2		FAM82A1		c2p38143040FS	ATGATCCTTGTTCACATCTCTAGG	c2p38143040ES	GAGGGATAGCATTTGGAGATATAC
chr2	40024657	40025112	40171153	40171608	-	10	455	4	noL1	"COLO1T,COLO1N"	28	471	AluSz		BC043380		c2p40024884FS	AGGAATAGGAGAGTTGTGAGACAC	c2p40024884ES	CAGAAGGCAATTCTGATAATACTG
chr2	40313196	40313309	40459692	40459805	-	26	113	5	L1PA2	"COLO1T,COLO1N"	831	496	L1PA2		"SLC8A1,BC043380"		c2p40313252FS	ATGTAACAGAAGGCAGAAGAAATC	c2p40313252ES	TACCCAAAGGACTATAAATCATGC
chr2	41209434	41209652	41355930	41356148	+	10	218	2	noL1	COLO1T	0	0	AluJb				c2p41209543FS	ATTTTGGGTCTTACATAACTGTGG	c2p41209543ES	AAACTCAAAATGTACAGAACCGTC
chr2	41630482	41630703	41776978	41777199	-	1656	221	6	L1HS	"COLO1T,COLO1N"	4669	364	L1HS				c2p41630592FS	AACACTCTGCTATTTCATGGATTC	c2p41630592ES	ATGATAGCCTGGATTAAGAAAATG
chr2	41904895	41905311	42051391	42051807	+	875	416	11	noL1	"COLO1T,COLO1N"	2098	350	"L1MD1,AluSz"	"LINE:Beck,Ewing,Iskow"			c2p41905103FS	TAGAGGAACTGTATTCCAGAGTGG	c2p41905103ES	TAAAACTTGGGAGAAAATCTTCAG
chr2	46705624	46706097	46852120	46852593	-	31	473	5	L1PA16	"COLO1T,COLO1N"	52	481	"AluJr,(T)n"		CRIPT	CRIPT.L	c2p46705860FS	TAATATGTGACCAAGAACACAAGG	c2p46705860ES	AATGTTATGACCAATAAAAATGCC
chr2	48379928	48380444	48526424	48526940	-	176	516	5	noL1	"COLO1T,COLO1N"	30	86	"L1PA8,AluSp"				c2p48380186FS	ATTTTATTGAGGATTTTTGCATTG	c2p48380186ES	TGTACTAAAAATACAAAATTAGCCAGG
chr2	49239996	49240200	49386492	49386696	-	469	204	10	noL1	"COLO1T,COLO1N"	1052	332	L1ME3F				c2p49240098FS	GCACATAGATAATTGAGAGGTGTG	c2p49240098ES	CAAATAAAACAAAAAGCATAAAAGG
chr2	52019551	52019769	52166047	52166265	-	3860	218	40	L1HS	"COLO1T,COLO1N"	12057	300	"L1HS,(T)n"				c2p52019660FS	no primer	c2p52019660ES	no primer
chr2	53313514	53313872	53460010	53460368	+	66	358	8	noL1	"COLO1T,COLO1N"	1460	358	MER58A	"LINE:Ewing,Iskow,Stewart"			c2p53313693FS	CTTATTTTGTAGCAGACAATGTGG	c2p53313693ES	ATTAAACACTTTTCCTACCTTCCC
chr2	53452071	53452453	53598567	53598949	+	22	382	7	noL1	"COLO1T,COLO1N"	26	385	"AluSx1,(A)n"				c2p53452262FS	AAGCAGTAAAAGTAAAGAAGGCTG	c2p53452262ES	CAAACCCCTGTACCTATAATTCAC
chr2	53481442	53481954	53627938	53628450	+	5769	512	25	L1HS	"COLO1T,COLO1N"	7619	728	"L1HS,AT_rich"	LINE:dbRIP			c2p53481698FS	ATCTAAGGCTTCTTAGAGGGTAGC	c2p53481698ES	ACACCGCATATTCTCACTCATAG
chr2	56740757	56740985	56887253	56887481	-	33	228	10	L1PA3	"COLO1T,COLO1N"	26	347	L1PA3				c2p56740871FS	TTGCAGTTTAAGTGATTAGACAGG	c2p56740871ES	TCACTCTCAGTAAACTATCGCAAG
chr2	60170274	60170762	60316770	60317258	+	57	488	6	L1PA2	"COLO1T,COLO1N"	335	476	"L1MC3,L1PA2,MIR3"				c2p60170518FS	CCTAAAAGACAGACCATTTGATTC	c2p60170518ES	TTGTCAGTAAACTATCGCAAGAAC
chr2	60558272	60558472	60704768	60704968	+	21	200	3	L1PA7	"COLO1T,COLO1N"	189	284			BCL11A		c2p60558372FS	AAAAATACAAAAATTAGCCAGGTG	c2p60558372ES	CAACTCCCAAATTACTCTGAAGAC
chr2	60863298	60864012	61009794	61010508	-	28	714	3	noL1	"COLO1T,COLO1N"	111	715	"AluSz6,(T)n"		PAPOLG	"PAPOLG.2,PAPOLG.1,PAPOLG.12,PAPOLG.11,PAPOLG.10,PAPOLG.9"	c2p60863655FS	TTAATTTAGGTCTTGCAGTCACAG	c2p60863655ES	GTAATCCCAGCACTTTGGGAG
chr2	62060082	62060447	62206578	62206943	-	49362	365	41	L1HS	"COLO1T,COLO1N"	370951	763	"L1M1,L1HS,AluSg"		COMMD1		c2p62060264FS	AGTAAGTGAGAATAGGCCAGAATG	c2p62060264ES	GATGAGTTCATATCCTTTGTAGGG
chr2	62086997	62087297	62233493	62233793	+	112	300	12	L1PA3	"COLO1T,COLO1N"	1934	96	L1PA3		COMMD1		c2p62087147FS	TTATAAAATACCCAAATTCAAGCC	c2p62087147ES	TCATTCTCAGTAAACTATCGCAAG
chr2	62711792	62712254	62858288	62858750	+	33	462	8	noL1	"COLO1T,COLO1N"	97	448	"MLT1E2-int,ERV3-16A3_I-int,SVA_C"		BC038779	BC038779.5	c2p62712023FS	TAATTCCCAGACCTTGAAACTTAG	c2p62712023ES	ATGCTGTTGATCTATGACCTTACC
chr2	66488777	66489269	66635273	66635765	-	260	492	9	noL1	"COLO1T,COLO1N"	2334	299	"AluSp,AluJo"				c2p66489023FS	ATCACAGTTCATTGTAGCCTTGAC	c2p66489023ES	TGGCAAGTGTATGGTGATTTATAG
chr2	71491678	71492161	71638170	71638653	-	3401	483	33	L1HS	"COLO1T,COLO1N"	4966	447	"L1HS,(T)n,AluSx3"		"ZNF638,NP220"		c2p71491919FS	TTTCTAAAGAGAGGGTTGGTATTG	c2p71491919ES	TCATTCTCAGTAAACTATCGCAAG
chr2	72512637	72513295	72659129	72659787	-	39	658	3	L1PA7	"COLO1T,COLO1N"	1328	67	"AluSq,L1PA7"		EXOC6B		c2p72512966FS	ATGACTCATCCCTTTTTATAGCTG	c2p72512966ES	AAGGGCTAATATCCAGAATCTACC
chr2	73207663	73207998	73354155	73354490	-	3885	335	39	L1HS	"COLO1T,COLO1N"	31147	609	"(CA)n,L1MC3,L1HS,AluSx1"	LINE:dbRIP			c2p73207830FS	CAGATTAACAGCACCAGTGATAAG	c2p73207830ES	GTTGAGTTCATATCCTTTGTAGGG
chr2	73560362	73560751	73706854	73707243	-	582	389	11	L1PA2	"COLO1T,COLO1N"	875	386	"L1MD1,L1PA2"		ALMS1		c2p73560556FS	AGTATGCAACCTTATTGTATTGGC	c2p73560556ES	TCATTCTCAGTAAACTATCGCAAG
chr2	75575112	75575222	75721604	75721714	-	15	110	3	noL1	"COLO1T,COLO1N"	55	119	MLT1F2		FAM176A		c2p75575167FS	CTAAGAAATACAGTTGACCCTTGG	c2p75575167ES	TGAAAACTGTTCACTCAAAGACTC
chr2	76300525	76300781	76447017	76447273	-	15	256	4	L1PA3	"COLO1T,COLO1N"	63	453	"AluYk4,AT_rich"				c2p76300653FS	TCTTTCAATAGGAAATCAGGACTC	c2p76300653ES	TCATTCTCAGTAAACTATCGCAAG
chr2	76728533	76728671	76875025	76875163	-	129	138	2	L1PA3	"COLO1T,COLO1N"	335	278	L1PA3				c2p76728602FS	TGTTTTGTGTACATATGTGTGTGG	c2p76728602ES	CAAATGTCCAACAATGATAGACTG
chr2	79783018	79783195	79929510	79929687	+	429	177	5	noL1	"COLO1T,COLO1N"	1289	595	"L2a,MER58B"	"LINE:Beck,Ewing,Stewart"	CTNNA2		c2p79783106FS	CAGAAGTTAACATCACAATCAAGC	c2p79783106ES	GGGTACTCAAAGTCTTTCATTCTG
chr2	80229620	80229722	80376109	80376211	+	26	102	2	noL1	"COLO1T,COLO1N"	149	101	AluJr		CTNNA2		c2p80229671FS	GAGAAAGAAGAAACTGTAATTGGC	c2p80229671ES	TTAGGTTCCATAAGGAAAACTGTC
chr2	81687747	81688349	81834236	81834838	-	5220	602	39	L1HS	"COLO1T,COLO1N"	23772	1041	"L2c,AT_rich,L1HS"				c2p81688048FS	TTATGGAGGACAATCTTCTTTACC	c2p81688048ES	GGGAGAGATACCTAATGCTAGATG
chr2	81951683	81951993	82098172	82098482	+	174	310	3	noL1	"COLO1T,COLO1N"	791	499	"L2b,L2"	"LINE:Ewing,Iskow"			c2p81951838FS	TTAAAACTGTTCACTTGTTCTTGG	c2p81951838ES	TGTTTTTAATCTTGCATATGTTGC
chr2	82921692	82922201	83068181	83068690	+	130794	509	67	L1HS	"COLO1T,COLO1N"	554420	718	L1HS	LINE:dbRIP			c2p82921946FS	TTTTCCAGGTGAGAAAAATTAAAG	c2p82921946ES	TCATTCTCAGTAAACTATCGCAAG
chr2	84311518	84311641	84458007	84458130	+	52	123	6	L1PA3	"COLO1T,COLO1N"	188	316	"L1PA3,AT_rich"				c2p84311579FS	AAGTTTCAGGGCAAATAAGTGTAG	c2p84311579ES	CACATGTTTATTGTGGCACTATTC
chr2	84326499	84326657	84472988	84473146	+	18	158	3	L1PA5	"COLO1T,COLO1N"	21	154	"MLT2B2,L1PA5"				c2p84326578FS	CTCTGAATGGATGTCTGTTACAAG	c2p84326578ES	GTCATCTTTAGTTGACCAAAAAGC
chr2	84530349	84531062	84676838	84677551	+	11	713	5	noL1	"COLO1T,COLO1N"	27	714	(A)n		SUCLG1	SUCLG1.7	c2p84530705FS	CAATTTCTCTTTTAGGTAGGTTGC	c2p84530705ES	GATATACATACCTGTTTGCCAGTG
chr2	84807401	84807752	84953890	84954241	+	36	351	4	L1PA4	"COLO1T,COLO1N"	205	352	"AT_rich,L1PA4"		"DNAH6,KIAA1697"		c2p84807576FS	TGGTTTCATTATATGTCATTTTGC	c2p84807576ES	AACACTGCATGTTCTCACTCATAG
chr2	85565497	85565902	85711986	85712391	+	34	405	2	noL1	"COLO1T,COLO1N"	74	298	"L1PA2,AluSx1,MER57A-int"				c2p85565699FS	ATTTAGAGATGGAGTCTTGCTCTG	c2p85565699ES	AACTAGAAATACCATTTGACCCAG
chr2	86735509	86735918	86881998	86882407	-	27	409	4	L1HS	"COLO1T,COLO1N"	31	893	L1HS				c2p86735713FS	CTGCTAGAATATTTTCCAACTTCC	c2p86735713ES	TCATTCTCAGTAAACTATCGCAAG
chr2	87261236	87261597	87407725	87408086	+	35	361	3	noL1	"COLO1T,COLO1N"	109	361	L2c		"ANAPC1,RMND5A"		c2p87261416FS	TACCTGCTTTAAAAGATGGAGTTC	c2p87261416ES	CAGCTACTCTTTTGTCCTTAGAGC
chr2	87988024	87988571	88206909	88207456	+	380	547	18	L1HS	"COLO1T,COLO1N"	471	546	"L1HS,(A)n"	LINE:dbRIP			c2p87988297FS	GTAGGTAGAAATTGTTGCTCTTCC	c2p87988297ES	ACACCGCATATTCTCACTCATAG
chr2	88167257	88167376	88386142	88386261	-	44	119	3	L1PA2	"COLO1T,COLO1N"	272	559			"DKFZp451P074,SMYD1"		c2p88167316FS	TCTCTTTGTATTGTTTTCCAACTG	c2p88167316ES	GAAGTAATAGGTGTCTGCATTGTG
chr2	88813333	88813756	89032218	89032641	+	208	423	8	L1HS	"COLO1T,COLO1N"	777	352	"L1HS,MIR"	LINE:dbRIP	RPIA		c2p88813544FS	GCAGTACACTCACTCTGTCCTATC	c2p88813544ES	TCATTCTCAGTAAACTATCGCAAG
chr2	88870377	88870479	89089262	89089364	-	439	102	7	noL1	"COLO1T,COLO1N"	234	69	L1MA3		"BX648045,BC031698"		c2p88870428FS	ATTTTGATACAGGCATACAATGTG	c2p88870428ES	TATCAGATGGCAAACAGGTATATG
chr2	89266568	89266967	89485453	89485852	+	38	399	2	noL1	"COLO1T,COLO1N"	71	150	L1PA2		abParts		c2p89266767FS	TAGGTATATCTCCCAATGCTATCC	c2p89266767ES	TAATGTGTCATTAAGTTTTGGGTG
chr2	89681919	89682153	90044614	90044848	-	332	234	6	noL1	COLO1T	0	0			abParts		c2p89682036FS	TTATAAGGTTTCTAACCGGTTCTC	c2p89682036ES	ACTATCCTTTTCTGTCAGCAAGAC
chr2	90982687	90982921	91618960	91619194	+	11	234	2	noL1	"COLO1T,COLO1N"	7	234					c2p90982804FS	AACACTCTACAAGGTCTCATCTCC	c2p90982804ES	AGTTTCAGAGGAATCATCAATTTC
chr2	91544792	91545054	92181065	92181327	-	91	262	2	noL1	"COLO1T,COLO1N"	131	262	L1MA5	LINE:Iskow			c2p91544923FS	CAAGATATGGAATCAACAAAAGTG	c2p91544923ES	AAATGTAATTTCAAACTCTGGGAG
chr2	91638216	91638499	92274489	92274772	+	16	283	4	L1PA2	"COLO1T,COLO1N"	205	761	ALR/Alpha				c2p91638357FS	TACGAAGATATTTCCTTTTTCACC	c2p91638357ES	TCATTCTCAGTAAACTATCGCAAG
chr2	91639252	91640511	92275525	92276784	-	11	1259	6	noL1	"COLO1T,COLO1N"	25	1259	ALR/Alpha				c2p91639881FS	GTTGATCATTCCCTTTCATAGAAC	c2p91639881ES	TTGAGTACACACATTCCCAATAAG
chr2	91653666	91653825	92289939	92290098	-	141	159	3	noL1	"COLO1T,COLO1N"	1675	575	ALR/Alpha				c2p91653745FS	CTACGGTGAAAAAGGTGTATCTTC	c2p91653745ES	CTTGAATGCAAACATCATAAAGAC
chr2	91654686	91655049	92290959	92291322	-	4682	363	3	noL1	"COLO1T,COLO1N"	18229	317	ALR/Alpha	Alu:Hormozdiari			c2p91654867FS	CAGTTTTGAAACACTCTTTTTGTG	c2p91654867ES	CAAATGTCCACATCCAGATACTAC
chr2	91659637	91660202	92295910	92296475	-	26	565	2	noL1	"COLO1T,COLO1N"	73	371	ALR/Alpha				c2p91659919FS	TGTGCTTAACTAACAGAGCTGAAC	c2p91659919ES	AGAGTTTATATGAAGACAATCCCG
chr2	91670026	91670812	92306299	92307085	-	13	786	4	noL1	"COLO1T,COLO1N"	48	942	ALR/Alpha	"Alu:Hormozdiari,LINE:Ewing"			c2p91670419FS	AATATCTTCCCCTGAAAGCTAGAC	c2p91670419ES	AGAGTTTATATGAAGACAATCCCG
chr2	91673178	91673582	92309451	92309855	-	20	404	5	noL1	"COLO1T,COLO1N"	69	72	ALR/Alpha				c2p91673380FS	TTTGAATATTCCCTTTCATAGAGC	c2p91673380ES	TCACAAATAAGTTTCTGAGAATGC
chr2	91683298	91683914	92319571	92320187	-	12	616	4	noL1	"COLO1T,COLO1N"	22	601	ALR/Alpha	LINE:Ewing			c2p91683606FS	CTGAGAATCTTATTTGTGATGTGC	c2p91683606ES	AGAGTTTATATGAAGACAATCCCG
chr2	91685889	91686149	92322162	92322422	-	35	260	4	noL1	"COLO1T,COLO1N"	108	1004	ALR/Alpha				c2p91686019FS	TATCTTCCCCTGAAAACTAGACAG	c2p91686019ES	AAAGCTAGACAAATATCCACTTGC
chr2	91687101	91687754	92323374	92324027	-	26	653	2	noL1	"COLO1T,COLO1N"	53	866	ALR/Alpha	Alu:Hormozdiari			c2p91687427FS	CTCAGAATCTTATTTGTGATGTGC	c2p91687427ES	AGAGTTTATATGAAGACAATCCCG
chr2	95908476	95908707	96544749	96544980	+	28	231	4	noL1	"COLO1T,COLO1N"	87	231	L1MA3		DKFZp667P0924		c2p95908591FS	AGTTTGATACAGGCATACAATGTG	c2p95908591ES	TATCAGATGGCAAACAGGTATATG
chr2	96988149	96988680	97624422	97624953	+	12	531	2	noL1	"COLO1T,COLO1N"	18	99	"AluSg,AluSz,L1MC5"		FAM178B		c2p96988414FS	TAACATTCTGATATGCTTCCTTTG	c2p96988414ES	AATACAAAAATTAACCTAGAGCGG
chr2	97249933	97250280	97886215	97886558	-	6593	347	29	L1HS	"COLO1T,COLO1N"	7920	315	"L1HS,L1MA3,(T)n"		KIAA1641		c2p97250106FS	ACCATTTCTTTGTGCTATCTTTTC	c2p97250106ES	TCATTCTCAGTAAACTATCGCAAG
chr2	97517765	97517997	98151333	98151565	+	45	232	7	noL1	"COLO1T,COLO1N"	108	233	L1MA3		ANKRD36B		c2p97517881FS	AGTTTGATACAGGCATACAATGTG	c2p97517881ES	TCAAAGCTACAATGAGGTATCATC
chr2	101487713	101487921	102121281	102121489	-	4444	208	30	L1HS	"COLO1T,COLO1N"	12188	489	"L1HS,(TTTA)n"				c2p101487817FS	CATCACGAGTGAAACTCTGTCTC	c2p101487817ES	TTGTTCTTGCGATAGTTTACTGAG
chr2	102548879	102549295	103182447	103182863	-	4580	416	20	L1HS	"COLO1T,COLO1N"	25584	781	"L1MEf,L1HS"	LINE:dbRIP			c2p102549087FS	TTTCAACATAAGCATGTAGTTTCC	c2p102549087ES	TCATTCTCAGTAAACTATCGCAAG
chr2	103154680	103154788	103788248	103788356	-	11	108	4	L1PA3	"COLO1T,COLO1N"	101	410	"L1PA3,(TTA)n"				c2p103154734FS	CTCTCTCCTTCAGAGTCTTACCTG	c2p103154734ES	ATAGACTGGATTAAGGAAATGTGG
chr2	105192329	105192613	105825897	105826181	-	63	284	4	noL1	"COLO1T,COLO1N"	96	69	"SVA_E,L1PA3,SVA_F"				c2p105192471FS	CACTGTGGTCTGAGAGATAGTTTG	c2p105192471ES	ATCCTGTTGATCTGTGACCTTATC
chr2	105517765	105518112	106151333	106151680	-	22	347	8	L1PA2	"COLO1T,COLO1N"	112	347	"L1P1,L1PA2,AluSz"				c2p105517938FS	TTTATGTTTGAGACAGAGTCTTGC	c2p105517938ES	TCATCATTCTCAGTAAACTATCGC
chr2	105529591	105530001	106163159	106163569	+	944	410	7	noL1	"COLO1T,COLO1N"	1062	555	L4	"LINE:Ewing,Iskow,Stewart"			c2p105529796FS	CTGAGACAGGAGAATAGCTTGG	c2p105529796ES	CTGTTGCTTCTCAGGAAAAATTC
chr2	106119765	106120197	106753333	106753765	+	43	432	9	L1PA2	"COLO1T,COLO1N"	106	433	"L1PA2,(A)n"		UXS1		c2p106119981FS	AAGTGCTAGGATTACAGGTGTGAG	c2p106119981ES	TCATTCTCAGTAAACTATCGCAAG
chr2	107998104	107998500	108631672	108632068	-	80655	396	32	L1HS	"COLO1T,COLO1N"	385175	416	L1HS	LINE:dbRIP			c2p107998302FS	GTGGACGTTATCTTCATTTTAACC	c2p107998302ES	CACTCTCAACTACTGTCCAACAAG
chr2	108321578	108321903	108955146	108955471	+	126	325	8	L1PA4	"COLO1T,COLO1N"	320	344	L1PA4				c2p108321740FS	TAGATTTTGACCAATCACATGAAC	c2p108321740ES	AACACCACATGTTCTCACTCATAG
chr2	112977383	112977914	113260912	113261443	-	10148	531	42	L1HS	"COLO1T,COLO1N"	25757	531	"L1MC,L1HS,(TG)n,AluSx,AT_rich"		TTL		c2p112977648FS	CAGTACCTAACAAGTGCTTTGAAC	c2p112977648ES	TTCTCAGTAAACTATCGCAAGAAC
chr2	115625448	115625821	115908978	115909351	-	15	373	4	noL1	"COLO1T,COLO1N"	24	270	"AluSx3,L1MC4"		"DPP10,BC032913"		c2p115625634FS	TTTAACTCAAGTATTCTTTTGCCC	c2p115625634ES	AGGACATTAAGAAAATCATCATGC
chr2	115850569	115850880	116134099	116134410	-	22	311	2	noL1	"COLO1T,COLO1N"	66	341	L1PA3		DPP10		c2p115850724FS	AAGGAATTGCTTCTCTTGTTATTG	c2p115850724ES	AACTAGAAATACCATTTGACCCAG
chr2	115962884	115963420	116246414	116246950	+	26539	536	43	L1HS	"COLO1T,COLO1N"	54699	526	"MER4D,L1HS,MER58A"	LINE:dbRIP	DPP10		c2p115963152FS	TATAAAGAAGAGGGTTCAACATCC	c2p115963152ES	TTCTCAGTAAACTATCGCAAGAAC
chr2	116522818	116523047	116806348	116806577	-	38	229	4	L1PA2	"COLO1T,COLO1N"	486	247	"L1PA13,L1PA2"				c2p116522932FS	TCATTTCTTTTGCTGTGTAGAAAC	c2p116522932ES	TCATTCTCAGTAAACTATCGCAAG
chr2	117117205	117117549	117400735	117401079	+	266	344	5	L1PA3	"COLO1T,COLO1N"	810	397	"L1PA3,AT_rich"				c2p117117377FS	TACATGCAAGTATTCCAAAATCTG	c2p117117377ES	AACTAGAAATACCATTTGACCCAG
chr2	117406586	117406764	117690116	117690294	+	19	178	7	L1PA3	"COLO1T,COLO1N"	60	418	L1PA3				c2p117406675FS	AGCTTCTTCCTTATTCCTATCTGG	c2p117406675ES	CAGATGTCCAACAATGATAGACTG
chr2	118283802	118284213	118567332	118567743	+	93	411	7	L1PA3	"COLO1T,COLO1N"	322	406	"L1PA3,L1PA8A"				c2p118284007FS	GTACCTATTGACCCATCCTCTAAG	c2p118284007ES	TCATTCTCAGTAAACTATCGCAAG
chr2	118383102	118384186	118666632	118667716	-	792687	1084	87	L1HS	"COLO1T,COLO1N"	1562091	1147	"L1P1,L1HS,AT_rich,L1PA3"				c2p118383644FS	AAAACTATTTGCTTGCTAAGTTGG	c2p118383644ES	GATGAGTTCATATCCTTTGTAGGG
chr2	119369559	119369834	119653089	119653364	-	95	275	7	L1PA2	"COLO1T,COLO1N"	555	442	"L1PA2,AluSc"	LINE:dbRIP			c2p119369696FS	GTTGTTGTTGTTTTTGAGACAGAG	c2p119369696ES	ATGATGAGTTCATGTCCTTTGTAG
chr2	124619810	124620154	124903340	124903684	+	146	344	20	L1PA2	"COLO1T,COLO1N"	272	360	"L1PA2,(A)n,MIRc"		CNTNAP5		c2p124619982FS	AAATTTTCTCATATTCCTGTGTCC	c2p124619982ES	TCATTCTCAGTAAACTATCGCAAG
chr2	124823666	124823775	125107196	125107305	-	117	109	3	noL1	COLO1T	0	0	MARNA		CNTNAP5		c2p124823720FS	GTACTTTCACAAAACCTGGATAGC	c2p124823720ES	ATCACGAGGTTAAGAGATCAAGAC
chr2	124887924	124888025	125171454	125171555	+	22	101	5	L1PA2	"COLO1T,COLO1N"	199	129	"(TAAA)n,L1PA2,LTR48B"		CNTNAP5		c2p124887974FS	AGGTCACCTAGAAAGCATTAACAG	c2p124887974ES	CAAATGTCCAACAATGATAGACTG
chr2	125732662	125732825	126016192	126016355	-	34	163	6	L1PA2	"COLO1T,COLO1N"	317	165	"L1PA2,CT-rich"				c2p125732743FS	TAATATTCCCTATGGAGAATGAGG	c2p125732743ES	TACTATGCAGCCATAAAAATGATG
chr2	125781041	125781251	126064571	126064781	+	1840	210	36	noL1	"COLO1T,COLO1N"	2134	238	"GA-rich,L1MB3"				c2p125781146FS	GAAGAAAGTGTGAAATATGATCCC	c2p125781146ES	TATTATGCAGCCTTAAAACAGATG
chr2	126227006	126227626	126510536	126511156	+	6517	620	19	L1HS	"COLO1T,COLO1N"	15849	474	"L1HS,AluSx1,MIR3"	LINE:dbRIP			c2p126227316FS	AACATGGTGAAACCTCATCTCTAC	c2p126227316ES	TGGGAGATATACCTAATGCTAGATG
chr2	126642750	126643251	126926280	126926781	+	456	501	9	L1PA3	"COLO1T,COLO1N"	4202	502	"L1PA3,L1PA7"				c2p126643000FS	ATAGGTATATATGTCCCATGGTGG	c2p126643000ES	TCATTCTCAGTAAACTATCGCAAG
chr2	126651608	126652140	126935138	126935670	-	5573	532	21	L1HS	"COLO1T,COLO1N"	11241	650	"L1HS,AT_rich,MIRb"				c2p126651874FS	AATGAAGCCTCAGAAACATTACAG	c2p126651874ES	TAATGCTAGATGACACGTTAGTGG
chr2	129290573	129290814	129574103	129574344	+	12	241	3	noL1	"COLO1T,COLO1N"	48	255	"(TA)n,L1MD2"	"LINE:Beck,Ewing,Stewart"			c2p129290693FS	TTAAAAACCCGTTTTGAGATATTG	c2p129290693ES	AGTTATGTGCCTGTAGTCCCAG
chr2	129332910	129333065	129616440	129616595	-	12	155	3	L1PA2	"COLO1T,COLO1N"	31	132	"L1PA2,L1ME1"				c2p129332987FS	AAGTGCTCCTTTTAATGTTTGTTC	c2p129332987ES	TATTGCCACATTATTCACAATAGC
chr2	129441586	129441959	129725116	129725489	+	72	373	3	L1PA3	"COLO1T,COLO1N"	1371	373	Tigger1				c2p129441772FS	GCAAGATAGATTTTTACCCTTCAC	c2p129441772ES	ACACTGCATATTCTCACTCATAGG
chr2	129833218	129833408	130116748	130116938	+	13	190	2	noL1	"COLO1T,COLO1N"	87	791	L1PA7				c2p129833313FS	ATAGCATTCCATGGTGTATATGTG	c2p129833313ES	GGAGTAGAACCGTTCCATATTAAG
chr2	129884604	129885161	130168134	130168691	-	31587	557	16	L1HS	"COLO1T,COLO1N"	64956	829	"L1PA3,L1HS,L1MC4"				c2p129884882FS	TGGCATGTCAATATATACCTGAAG	c2p129884882ES	TTCTCAGTAAACTATCGCAAGAAC
chr2	129921561	129921911	130205091	130205441	+	16	350	6	L1PA5	"COLO1T,COLO1N"	358	194	"L1PA5,L1MEc"				c2p129921736FS	AATGATTTTTCTTCTCACTTGGAG	c2p129921736ES	AACCATGATTCTCAGCAAACTATC
chr2	130156256	130156394	130439786	130439924	-	320	138	11	L1HS	"COLO1T,COLO1N"	2530	786	"L1MDa,(T)n,L1PA6"				c2p130156325FS	TAATCAACTGAGTCCAACATCAAG	c2p130156325ES	GATGAGTTCATATCCTTTGTAGGG
chr2	131783862	131784473	132067392	132068003	+	54	611	4	noL1	"COLO1T,COLO1N"	4	65	MIRb		PLEKHB2		c2p131784167FS	AAGCTAAGGGATTTTAGCTTTCTC	c2p131784167ES	TAAAGGAAGGTAAATGTTAAAGCG
chr2	132679269	132679698	132962799	132963228	+	13	429	3	noL1	"COLO1T,COLO1N"	57	265	"AluSp,A-rich"	LINE:Iskow	LOC554226		c2p132679483FS	AATTGACCTTTCTAAACATTCTGC	c2p132679483ES	GAAAATCAAACATCAAAGGAAATG
chr2	132715003	132715836	132998533	132999366	-	18	833	6	noL1	"COLO1T,COLO1N"	41	921	ALR/Alpha	Alu:Hormozdiari	LOC554226		c2p132715419FS	AGTGGATATTTGGATAGCTTTGAG	c2p132715419ES	ACTTGCGTATCAAAAGAAAAATTC
chr2	132716368	132717067	132999898	133000597	-	18	699	2	noL1	"COLO1T,COLO1N"	26	1014	ALR/Alpha		LOC554226		c2p132716717FS	AGTGGATATTTGGATAGCTTTGAG	c2p132716717ES	TCAAAAGAAAGTTTCAAGACTGTG
chr2	132719700	132720384	133003230	133003914	-	4535	684	7	noL1	"COLO1T,COLO1N"	6161	906	ALR/Alpha		LOC554226		c2p132720042FS	ATTCCTTTTCATAGAGCAGTTTTG	c2p132720042ES	TCAAAAGAAAAGTTCAACTCTGTG
chr2	133776782	133777201	134060312	134060731	+	737	419	13	L1HS	"COLO1T,COLO1N"	2684	489	"(TAAA)n,L1HS"	LINE:dbRIP	NAP5	"NAP5.2,NAP5.14,NAP5.16,NAP5.5"	c2p133776991FS	GCTGACTCAGTGTAATGACAGTTC	c2p133776991ES	GATGAGTTCATATCCTTTGTAGGG
chr2	134538963	134539593	134822493	134823123	+	182	630	18	noL1	"COLO1T,COLO1N"	251	242	"SVA_D,L1PA4"				c2p134539278FS	TGGTTTGTCAGTATTTTATTGAGG	c2p134539278ES	CTTTGTTCACTTGTTTATCTGCTG
chr2	134682865	134683284	134966395	134966814	-	93089	419	38	L1HS	"COLO1T,COLO1N"	310615	420	"L1HS,(T)n"	LINE:dbRIP			c2p134683074FS	TGTGGATAAAAGCTAAGGAAGAAC	c2p134683074ES	TCATTCTCAGTAAACTATCGCAAG
chr2	135305455	135305906	135588985	135589436	+	28	451	5	L1PA2	"COLO1T,COLO1N"	86	391	"L1PA10,L1PA2,LTR78"				c2p135305680FS	GTTAGGGAAGGAAAAGAAAGATTC	c2p135305680ES	TCATTCTCAGTAAACTATCGCAAG
chr2	135882962	135883150	136166492	136166680	+	12	188	5	L1PA4	"COLO1T,COLO1N"	73	226	"L1PA4,MSTA"		"DKFZP434B1727,ZRANB3"		c2p135883056FS	TATTTTGAGGTATATCCCTGATGC	c2p135883056ES	GTGATGAGTTCATGTCCTTTGTAG
chr2	137184429	137184742	137467959	137468272	-	107	313	8	L1PA4	"COLO1T,COLO1N"	398	340	L1PA4				c2p137184585FS	ACCCCTGTTCTTAAGTAAATCCTC	c2p137184585ES	AACACTGCATGTTCTCACTCATAG
chr2	137738603	137738913	138022133	138022443	-	23	310	8	L1PA3	"COLO1T,COLO1N"	94	305	"L1PA3,AT_rich"		THSD7B		c2p137738758FS	AGACAGAGTCTCGCTCTCTTG	c2p137738758ES	GATTAGTTCATGTCCTTTGTAGGG
chr2	137846359	137847021	138129889	138130551	-	78	662	5	noL1	"COLO1T,COLO1N"	200	662	"MER4D,L1PA3,(T)n"		THSD7B		c2p137846690FS	CAAGAGAAGAATTTTTCAGTGGTG	c2p137846690ES	TCATTCTCAGTAAACTATCGCAAG
chr2	137866939	137867249	138150469	138150779	-	18	310	4	L1PA2	"COLO1T,COLO1N"	133	310	"L1PA2,L1MA4A"		THSD7B		c2p137867094FS	ATATAGCTACTCTGCTCCCTTCTG	c2p137867094ES	AACAATGAGATCACATGGACATAG
chr2	137961395	137961830	138244925	138245360	+	19672	435	18	noL1	"COLO1T,COLO1N"	58551	440	"L1P1,AluYb9,AluYa5"		THSD7B		c2p137961612FS	GAAACCCCGTCTCTACTAAAAATAC	c2p137961612ES	ATCATGAGGTCAGGAGATTGAG
chr2	140352373	140352602	140635903	140636132	-	21	229	5	L1HS	"COLO1T,COLO1N"	51	173	"L1HS,(TTTTTA)n"				c2p140352487FS	AAGCCCCATCACTACTAAAAATAC	c2p140352487ES	TCATTCTCAGTAAACTATCGCAAG
chr2	141134909	141135566	141418439	141419096	-	167	657	6	noL1	"COLO1T,COLO1N"	673	661	AluJb		LRP1B		c2p141135237FS	AACAGCTTTCAAAGAAAGGTACAC	c2p141135237ES	AAGTGATTCTCCTATCTCAACCAC
chr2	141543525	141543899	141827055	141827429	-	938	374	20	L1PA3	"COLO1T,COLO1N"	3501	390	L1PA3		"LRP1B,LRPDIT"		c2p141543712FS	TTTCATTTTCCATAATCTGAGAGC	c2p141543712ES	TCATTCTCAGTAAACTATCGCAAG
chr2	142504975	142505429	142788505	142788959	-	32938	454	41	L1HS	"COLO1T,COLO1N"	121105	457	L1HS	LINE:dbRIP	"LRP1B,LRPDIT"		c2p142505202FS	GGACTCATGACCTAGAAAGAAATC	c2p142505202ES	AAGTAAAATCACACATGGACACAG
chr2	144340959	144341471	144624489	144625001	+	44438	512	68	L1HS	"COLO1T,COLO1N"	196021	512	L1HS	LINE:dbRIP			c2p144341215FS	TTTTAGCTGTATTGATGCTCTGTC	c2p144341215ES	TCATTCTCAGTAAACTATCGCAAG
chr2	146737452	146737831	147020982	147021361	+	5524	379	22	noL1	"COLO1T,COLO1N"	8952	446	MER53	"LINE:dbRIP,Ewing,Stewart"			c2p146737641FS	CTTCACATTGCCATCTAAGTTATG	c2p146737641ES	CCCAGTGATCTTGTTTTATTATCC
chr2	148477984	148478128	148761514	148761658	+	16	144	2	noL1	"COLO1T,COLO1N"	23	199	L1PA7		ORC4L		c2p148478056FS	TGATGTATGGTGTTATTTCTGAGG	c2p148478056ES	ATCTCAATAGATGTAGAAAACGCC
chr2	148668741	148669307	148952271	148952837	+	3471	566	29	L1HS	"COLO1T,COLO1N"	12774	600	"L1HS,L1MEf,MER58A"		MBD5		c2p148669024FS	CTTTCAACTCTTACCAGTTTTTGC	c2p148669024ES	TCATTCTCAGTAAACTATCGCAAG
chr2	148699941	148700201	148983471	148983731	-	112	260	11	L1PA4	"COLO1T,COLO1N"	535	363	"L1MA2,L1PA4"		MBD5		c2p148700071FS	TCAAAATACTCCCTTTAGCATTTC	c2p148700071ES	GATGAGTTTATGTCCTTTGTAGGG
chr2	149849392	149849581	150141146	150141335	+	1302	189	12	L1PA4	"COLO1T,COLO1N"	5386	448	L1PA4				c2p149849486FS	ATCTTTGTTTCTGGAAATCTTTTG	c2p149849486ES	TGATTTCATGTCCTTTGTAGAGAC
chr2	150058693	150058969	150350447	150350723	-	10	276	3	L1PA8	"COLO1T,COLO1N"	39	209	L2a				c2p150058831FS	TACCTTCTCAACTGTATTCTTCCC	c2p150058831ES	ACTAACAGGAACAGAAAACCAAAC
chr2	150515993	150516345	150807747	150808099	+	67	352	11	L1PA2	"COLO1T,COLO1N"	320	489	"MSTD,L1PA2,AT_rich"				c2p150516169FS	AAGACTTTTAGAGCTATTGGGATG	c2p150516169ES	TCATTCTCAGTAAACTATCGCAAG
chr2	153572141	153572578	153863895	153864332	-	8503	437	42	L1HS	"COLO1T,COLO1N"	44050	447	"L1M2,L1HS,L1ME3E"				c2p153572359FS	TAGTTTGTGCTTATGCATCTTGTC	c2p153572359ES	TCATTCTCAGTAAACTATCGCAAG
chr2	156008296	156008557	156300050	156300311	-	35	261	2	L1PA2	"COLO1T,COLO1N"	18	65	"MIR,AT_rich,MLT1J"				c2p156008426FS	ATCCTGTGTCTTCCTGTTTTCTAC	c2p156008426ES	TCATTCTCAGTAAACTATCGCAAG
chr2	156236044	156236358	156527798	156528112	+	1164	314	25	noL1	"COLO1T,COLO1N"	6856	314	"(GAAA)n,L1M2,AluSq"	"LINE:Ewing,Iskow"			c2p156236201FS	CCACATGTAGAAGAATGAAATCAG	c2p156236201ES	ATGTCTTATTTTAAGAATGGTGGC
chr2	157015407	157015927	157307161	157307681	-	27	520	5	noL1	"COLO1T,COLO1N"	68	81	"SVA_D,L2b"		GPD2		c2p157015667FS	TCTCTGAGGCTAAGAATTCAAAAG	c2p157015667ES	CTACTGGGAAGTGAGGAGCAC
chr2	157092995	157093148	157384749	157384902	-	13	153	5	L1PA3	"COLO1T,COLO1N"	67	108			GPD2		c2p157093071FS	TTTCCTTAAGAAGGTTGAAGTCTG	c2p157093071ES	TCATTCTCAGTAAACTATCGCAAG
chr2	157252815	157252920	157544569	157544674	-	28	105	2	L1PA5	"COLO1T,COLO1N"	49	103					c2p157252867FS	ACTGAGAGTTAGGGCTTCAATATG	c2p157252867ES	TAGACTGGATTAAGAAAATGTGGC
chr2	158137061	158137250	158428815	158429004	+	1841	189	17	L1HS	"COLO1T,COLO1N"	8974	469	L1HS		ACVR1C		c2p158137155FS	ATCCATTTATAGCTCACTCTCTGG	c2p158137155ES	TCATTCTCAGTAAACTATCGCAAG
chr2	160228215	160228682	160519969	160520436	-	61621	467	56	L1HS	"COLO1T,COLO1N"	109135	483	"L1HS,AluSg,AluSx"		DKFZp686H10114		c2p160228448FS	AGTAGCTGGGATTACAGGTGTG	c2p160228448ES	TCATTCTCAGTAAACTATCGCAAG
chr2	160685378	160685856	160977132	160977610	+	754587	478	19	L1HS	"COLO1T,COLO1N"	2336525	708	"L1HS,L1PA4"		ITGB6		c2p160685617FS	AATTGGAATAAATAGAGGATTCCC	c2p160685617ES	TCATTCTCAGTAAACTATCGCAAG
chr2	160701537	160701836	160993291	160993590	+	23	299	9	noL1	"COLO1T,COLO1N"	151	302	L1PA4		ITGB6		c2p160701686FS	CCTTAGACCTAGGGTAACTGAATC	c2p160701686ES	AACTAGAAATACCATTTGACCCAG
chr2	161165177	161165632	161456931	161457386	-	65	455	4	noL1	"COLO1T,COLO1N"	124	67	"MLT2B3,(T)n"				c2p161165404FS	GTGGTCCTTCTAGAGCTACTCAAC	c2p161165404ES	CCTAAGAGCAGTAGGAAGAGTCAC
chr2	161181186	161181434	161472940	161473188	+	88	248	7	noL1	COLO1T	0	0	L1ME3A				c2p161181310FS	TGGGCTTTATAGTTACCATTTTTC	c2p161181310ES	TATAGATTCAGTTAGCACCAAAGC
chr2	164688325	164688773	164980079	164980527	+	115684	448	38	L1HS	"COLO1T,COLO1N"	348701	564	"L1HS,AT_rich"				c2p164688549FS	CCTTTTGAATTGTTTGTACAGTTG	c2p164688549ES	TCATTCTCAGTAAACTATCGCAAG
chr2	165981005	165981252	166272759	166273006	-	314	247	6	noL1	COLO1T	0	0	L1PB1				c2p165981128FS	TTATCAGATCTAGGAGCTTTTTGG	c2p165981128ES	ATAAAAATCACTTCATTCTGGCTC
chr2	166746617	166747090	167038371	167038844	+	61	473	3	noL1	"COLO1T,COLO1N"	19	65	L1P4d		BC051759		c2p166746853FS	TGGAAAGATTACCTTCCACTAAAC	c2p166746853ES	TACACCACCAAATAAAAATTCTCC
chr2	167472324	167472434	167764078	167764188	-	64	110	7	L1PA5	"COLO1T,COLO1N"	258	110	"L1PA5,MLT1H"		XIRP2		c2p167472379FS	CAAAAATTTGTTGCAAAATTACAG	c2p167472379ES	GCTGCTATAAAGACATATGCACAC
chr2	167559201	167559456	167850955	167851210	+	59	255	7	L1HS	"COLO1T,COLO1N"	315	527	"L1HS,AT_rich,L1MC4"		XIRP2		c2p167559328FS	TAAAAATACAAAAATTAGCTGGGC	c2p167559328ES	TCATTCTCAGTAAACTATCGCAAG
chr2	168061895	168062057	168353649	168353811	+	11	162	2	L1PA4	"COLO1T,COLO1N"	4	215	L2a				c2p168061976FS	CACCTCAGAGTCTCCTTTTCTTAG	c2p168061976ES	TTTCTACCACATGAGGATATGATG
chr2	168443562	168443749	168735316	168735503	-	584	187	6	noL1	"COLO1T,COLO1N"	30	418	"MER5A1,AluJb"	"LINE:Ewing,Iskow"			c2p168443655FS	CTGTATCTGTTTGTGCTTTCTGAC	c2p168443655ES	AGTCTCTGGTATGGTAAGCATCTC
chr2	169819352	169819846	170111106	170111600	+	8688	494	38	L1HS	"COLO1T,COLO1N"	36477	528	L1HS	LINE:dbRIP	LRP2		c2p169819599FS	TTTTGTTTAAGTCTACCAAAAGCC	c2p169819599ES	TCATTCTCAGTAAACTATCGCAAG
chr2	169833409	169833517	170125163	170125271	+	28	108	2	noL1	"COLO1T,COLO1N"	60	95	L1PA5		LRP2		c2p169833463FS	TTTGTAGTTCTCCTTGAAGAGGTC	c2p169833463ES	AACTATTCCAATCAAAGCAAAAAG
chr2	169966966	169967180	170258720	170258934	+	12	214	3	noL1	"COLO1T,COLO1N"	15	385	L1PA4				c2p169967073FS	ATTGATTGGAATAGTTTCAGAAGG	c2p169967073ES	ACATAGTTGGAAGTAAAGCACTCC
chr2	172205810	172206044	172497564	172497798	-	21	234	3	L1PA4	"COLO1T,COLO1N"	40	237	"L1MA3,L1PA4"				c2p172205927FS	TTGTATTTTTAGTAGAGATGGGGC	c2p172205927ES	TCATTCTCAGCAAACTATCACAAG
chr2	172894226	172894349	173185980	173186103	+	1327	123	11	L1HS	"COLO1T,COLO1N"	3665	127	"L1HS,(A)n"				c2p172894287FS	TAGACATTACTACATTGCCTTTCG	c2p172894287ES	CAAATGTCCAACAATGATAGACTG
chr2	175519826	175520509	175811580	175812263	-	31	683	3	noL1	"COLO1T,COLO1N"	37	673	"AluJb,FLAM_C,MER113"		CHN1		c2p175520167FS	GATATGTGTAAATCTCCATCCTCC	c2p175520167ES	AATACAAAAATTAGCTTGACGTGG
chr2	176338532	176338682	176630286	176630436	+	38	150	6	L1PA3	"COLO1T,COLO1N"	273	150	L1PA3				c2p176338607FS	TGAGTACTTTCAAAATAAGCATGTG	c2p176338607ES	ATGATGAGTTCATGTCCTTTGTAG
chr2	178231686	178232265	178523440	178524019	+	31	579	3	noL1	"COLO1T,COLO1N"	45	579	AluSq2		PDE11A		c2p178231975FS	AGAGTAGGAAAATTTTGGTAAGGG	c2p178231975ES	TTTGAGTTATGTATGATGCCATTC
chr2	178552008	178552531	178843762	178844285	+	3029	523	15	L1HS	"COLO1T,COLO1N"	10192	520	"L1HS,MER65D"		PDE11A		c2p178552269FS	GAGGATATCCATTCACACTTGAG	c2p178552269ES	CCATCATTCTCAGTAAACTATTGC
chr2	179065553	179065937	179357307	179357691	+	284	384	12	L1PA3	"COLO1T,COLO1N"	1829	374	"L1PA3,L1MB3"	LINE:Ewing	PLEKHA3		c2p179065745FS	AACTAAACATCCAGCCATAATCTC	c2p179065745ES	AATAACCCAAATGTTCATTGGTAG
chr2	179271456	179271912	179563211	179563667	+	16	456	3	noL1	"COLO1T,COLO1N"	3	461	"(A)n,L1MA7"		TTN	"TTN.46,TTN.26,TTN.204"	c2p179271684FS	GCAGACATAAAATCAGTGAAGATG	c2p179271684ES	AATCTTAGACAGAAGAAACATGGC
chr2	180708842	180709273	181000597	181001028	+	224	431	9	noL1	"COLO1T,COLO1N"	356	189		LINE:Ewing			c2p180709057FS	TTTCTAAATCGGGTATGTTTTAGC	c2p180709057ES	GTGAAAATTTGTATGTAGTTCCCC
chr2	181196549	181197103	181488304	181488858	+	137	554	7	noL1	"COLO1T,COLO1N"	604	568	"L1PA4,MLT1B"				c2p181196826FS	TATTTCCTTTTAATGCTTTCATCC	c2p181196826ES	AAAATGAAGAGTTCATGTCCTTTG
chr2	181403336	181403450	181695091	181695205	-	54	114	8	L1PA3	"COLO1T,COLO1N"	227	615					c2p181403393FS	GCTTACTATAGTTCCAGCAACACC	c2p181403393ES	TCATTCTCAGTAAACTATCGCAAG
chr2	181406050	181406680	181697805	181698435	-	50230	630	79	L1HS	"COLO1T,COLO1N"	134704	630	"L1ME4a,L1HS"				c2p181406365FS	AAGATGTCTAACATCAAAGAAGCC	c2p181406365ES	TAATGCTAGATGACACGTTAGTGG
chr2	183004050	183004637	183295805	183296392	+	366	587	8	L1HS	"COLO1T,COLO1N"	341	587	"L1HS,(A)n"		PDE1A		c2p183004343FS	TGGTAAGTTGTTTCTTCTTTTTCC	c2p183004343ES	AATGCTAGATGATGAGTTAGTGGG
chr2	183081692	183081825	183373447	183373580	-	15	133	5	L1PA2	"COLO1T,COLO1N"	109	146	"(TTTTA)n,L1PA2,(TTTTTA)n"		PDE1A		c2p183081758FS	CAACATAGTACTGGAAGTCTTAGCC	c2p183081758ES	TAACTTATTTGGCCTTTGGTACAC
chr2	185519783	185520326	185811538	185812081	-	8438	543	27	L1HS	"COLO1T,COLO1N"	35720	587	L1HS				c2p185520054FS	CATGTGAGACCTGAACTTAGTGAC	c2p185520054ES	TTCTCAGTAAACTATCGCAAGAAC
chr2	186663713	186664186	186955468	186955941	-	931	473	11	noL1	"COLO1T,COLO1N"	2595	477	"L1PA3,AT_rich"				c2p186663949FS	TAAAGAATGGAAGACAGGATAAGG	c2p186663949ES	ATTAAAAAGTCAGGAAACAACAGG
chr2	192236110	192236433	192527865	192528188	-	124	323	6	L1PA3	"COLO1T,COLO1N"	644	496	MER68				c2p192236271FS	CTAACAGCAATAATAGGGGTTGTC	c2p192236271ES	TCATTCTCAGTAAACTATCGCAAG
chr2	193785045	193785443	194076800	194077198	-	5433	398	16	L1HS	"COLO1T,COLO1N"	1174	433	L1HS				c2p193785244FS	AGATACTGAGTTAGTGAAGGTGGC	c2p193785244ES	TCATTCTCAGTAAACTATCGCAAG
chr2	194170631	194171013	194462386	194462768	+	972	382	9	L1HS	"COLO1T,COLO1N"	2418	382	"L1HS,L1MA2"				c2p194170822FS	TTTCACTATGTTTGACTAGGTTGG	c2p194170822ES	ATGATGAGTTCATGTCCTTTGTAG
chr2	196099008	196099212	196390763	196390967	+	22	204	5	noL1	"COLO1T,COLO1N"	25	73	L1PA3				c2p196099110FS	TATTGATTATTGCCACAATTTCAG	c2p196099110ES	TATACATTCTTTTCAGCACCACAC
chr2	197484541	197485059	197776296	197776814	+	12840	518	34	L1HS	"COLO1T,COLO1N"	23199	518	"MIR,L1HS,AT_rich"		"PGAP1,hPGAP1"		c2p197484800FS	TGTGTTTAAACTTCCTATGCTTTG	c2p197484800ES	TTCTCAGTAAACTATCGCAAGAAC
chr2	197641285	197641761	197933040	197933516	+	22208	476	32	L1HS	"COLO1T,COLO1N"	35617	482	"L1PA5,L1HS,(A)n"		ANKRD44		c2p197641523FS	TGGGTCAAATGGTATTTTTAGTTC	c2p197641523ES	TCATTCTCAGTAAACTATCGCAAG
chr2	198260333	198260529	198552088	198552284	-	15	196	4	L1PA2	"COLO1T,COLO1N"	26	180	"L1PB2,L1PA2,(T)n"				c2p198260431FS	GTTTGTGAATATTTTCTCCCACTC	c2p198260431ES	TCATTCTCAGTAAACTATCGCAAG
chr2	199488295	199488572	199780050	199780327	+	135	277	7	noL1	"COLO1T,COLO1N"	200	350	MLT1G1	"LINE:Ewing,Stewart"			c2p199488433FS	TGAATACCCATTCACTATCTGTTG	c2p199488433ES	AAACAAAATCTCTTAAGGGTCCTC
chr2	201346549	201346731	201638304	201638486	+	105	182	3	noL1	"COLO1T,COLO1N"	2099	439		"LINE:Ewing,Iskow"	AOX2		c2p201346640FS	TTGCAATAAATTACTCTATGCTGC	c2p201346640ES	GATGTATACCAGGTGTGTATGGAG
chr2	203253378	203253499	203545133	203545254	+	20	121	2	L1PA4	"COLO1T,COLO1N"	52	121	"L1PA4,L1ME1"		FAM117B		c2p203253438FS	AATCAAATAATGTCCAAAGAGTCC	c2p203253438ES	TAGAAACCACACAAAAATTGAATG
chr2	205339761	205340019	205631516	205631774	-	215	258	11	L1HS	"COLO1T,COLO1N"	690	258	"L1HS,(T)n"		PARD3B		c2p205339890FS	CATTAGCCTGAAGTTTGTCATAAG	c2p205339890ES	TCATTCTCAGTAAACTATCGCAAG
chr2	205563790	205564103	205855545	205855858	-	23	313	4	L1PA2	"COLO1T,COLO1N"	121	428	"L1PA2,L1ME3E"		PARD3B		c2p205563946FS	TACCCATTAACAAACCTTTCTTTC	c2p205563946ES	TCATTCTCAGTAAACTATCGCAAG
chr2	205855632	205855781	206147387	206147536	+	2695	149	11	noL1	"COLO1T,COLO1N"	5757	174	MER101	"LINE:Ewing,Stewart"	PARD3B		c2p205855706FS	TGTAAGGATTCTCACACTCTGAAG	c2p205855706ES	TATTTCATCTTCCTGGTCTCTTTC
chr2	207486972	207487734	207778727	207779489	+	1734	762	22	L1PA2	"COLO1T,COLO1N"	4232	762	"L1MA2,L1PA2,AluSp,L1ME2"				c2p207487353FS	CTAGCATAACCCCAATAACAATAC	c2p207487353ES	CTAGATGACAAGTTAGTGGGTGC
chr2	207846287	207846552	208138042	208138307	-	409	265	20	L1PA2	"COLO1T,COLO1N"	663	362	"L1PA2,L1PA17"				c2p207846419FS	ATTGATTGATTCTTTCCCATTAAC	c2p207846419ES	TCATTCTCAGTAAACTATCGCAAG
chr2	208895932	208896085	209187687	209187840	-	16	153	3	L1PA3	"COLO1T,COLO1N"	29	152	"L1PA3,AT_rich,L1PA5"		PIP5K3		c2p208896008FS	GTGTTTGCATTAATTTGCTTACAG	c2p208896008ES	ACATACACACCATGGAATACTCTG
chr2	209322194	209322316	209613949	209614071	-	1675	122	4	noL1	"COLO1T,COLO1N"	10483	124	L1PA3		PTHR2		c2p209322255FS	ATTTGGTTTGCCAGTATTTTATTG	c2p209322255ES	ATGAAGGCAGAAATAAAGATGTTC
chr2	211798030	211798331	212089785	212090086	+	55	301	3	noL1	"COLO1T,COLO1N"	102	296	L1PA2				c2p211798180FS	ATTTCCTTTACTTATGTGTCGTCC	c2p211798180ES	TCAGGGATCTAGAACTGGAAATAC
chr2	213275559	213275834	213567314	213567589	+	617	275	11	L1HS	"COLO1T,COLO1N"	2782	759	L1HS				c2p213275696FS	AGGAATTGAGTGAAGTAAAGATGC	c2p213275696ES	TCATTCTCAGTAAACTATCGCAAG
chr2	213279752	213279908	213571507	213571663	-	11	156	4	noL1	"COLO1T,COLO1N"	11	125	LTR85c				c2p213279830FS	GAATATCCCTTATTTGTACATGGC	c2p213279830ES	TGACCTTGTGTTTAGTAGAGCAAC
chr2	214139697	214140245	214431452	214432000	-	75	548	12	L1HS	"COLO1T,COLO1N"	3695	506	"L1HS,(T)n,Mam_R4"		SPAG16		c2p214139971FS	GTCGACAACCTTAAATTTCATAGC	c2p214139971ES	TGGGAGATATACCTAATGCTAGATG
chr2	214611331	214611498	214903086	214903253	-	14	167	3	L1PA4	"COLO1T,COLO1N"	40	167	L1MC4		SPAG16		c2p214611414FS	GACGTGCTAAATGTCTAATGTCAG	c2p214611414ES	TAATGATTTCATGTCCTTTGTAGG
chr2	215295772	215296015	215587527	215587770	+	46	243	12	L1PA3	"COLO1T,COLO1N"	629	482	L1PB1				c2p215295893FS	GTCCATTTACTCTGCTGACTGTTC	c2p215295893ES	TCATTCTCAGTAAACTATCGCAAG
chr2	215769389	215769997	216061144	216061752	+	55	608	3	L1PA5	"COLO1T,COLO1N"	100	608	"L1PA5,AluY"				c2p215769693FS	TCACAAGGTCAGGAGATTGATAC	c2p215769693ES	TGAAACCCCATCTCTACTAAAAATAC
chr2	216531214	216531413	216822969	216823168	+	61	199	4	L1PA4	"COLO1T,COLO1N"	235	437	"(TAAA)n,L1PA4"		MREG		c2p216531313FS	AGAAAGCATGTTAAGAAGGGTATG	c2p216531313ES	CAAATGTCCAACAATGATAGACTG
chr2	217884690	217885069	218176445	218176824	+	27733	379	46	L1HS	"COLO1T,COLO1N"	123953	564	L1HS		AK024261		c2p217884879FS	ACTCTGTAGGGAGAAACTCAAATG	c2p217884879ES	GATGAGTTCATATCCTTTGTAGGG
chr2	220386194	220386509	220677950	220678265	-	711	315	11	L1PA4	"COLO1T,COLO1N"	2068	446	"L1MA8,AT_rich,L1PA4"				c2p220386351FS	CTTTTTCTTGGTAGGAGTATGCAG	c2p220386351ES	TACACCATGGAATACTATGTAGCC
chr2	220986170	220986508	221277926	221278264	-	17	338	4	L1PA14	"COLO1T,COLO1N"	114	321	L1MEc				c2p220986339FS	CTCTCCAACAAAGGAAAGAGTG	c2p220986339ES	ATCAGTAAACTGTGGGACAAATTC
chr2	221211630	221211975	221503386	221503731	-	57	345	2	noL1	"COLO1T,COLO1N"	384	117		"LINE:Ewing,Iskow,Stewart"			c2p221211802FS	AACACACTTTGTAGCACTCACTTC	c2p221211802ES	CAAGATCAAATGACTACAGAATGG
chr2	221945248	221945414	222237004	222237170	+	18	166	4	noL1	"COLO1T,COLO1N"	77	89					c2p221945331FS	TTATTTTTCTCTGCATTCAGTCAG	c2p221945331ES	ATTGCTTCCAGTGAAAATACTAGG
chr2	223612603	223613048	223904359	223904804	+	1372	445	36	L1HS	"COLO1T,COLO1N"	5133	448	"L1HS,L1M4"				c2p223612825FS	TATTTTCCTTTCACAATCCCTAAG	c2p223612825ES	TCATTCTCAGTAAACTATCGCAAG
chr2	223750872	223751242	224042628	224042998	-	22	370	4	L1PA2	"COLO1T,COLO1N"	47	236	"L2a,L1PA2"				c2p223751057FS	TATTTAGTTTGAGTAGTTTGGGGC	c2p223751057ES	CTTTTAAAATGTAGGTGGGAATTG
chr2	229428865	229428982	229720621	229720738	+	2169	117	9	L1PA2	"COLO1T,COLO1N"	7823	451	L1PA2				c2p229428923FS	TTTAACCTGCATTTCTTGAATTAG	c2p229428923ES	GGCATTATTCACAATAGCAAAGAC
chr2	230049810	230050009	230341566	230341765	+	1311	199	5	noL1	"COLO1T,COLO1N"	3336	379		"LINE:Ewing,Stewart"	DNER		c2p230049909FS	AGTTGAATCCATCAATTCCTAGAG	c2p230049909ES	GTCAATGTTACTTCTGTGGATCAG
chr2	232721124	232722224	233012880	233013980	-	5803	1100	26	L1HS	"COLO1T,COLO1N"	27285	598	"L1HS,(T)n,AluSc"		"FLJ00327,DIS3L2"		c2p232721674FS	TTTTTAGTAGAGATGGGGTTTCAC	c2p232721674ES	ACTTGGAAAACACCAGAAAATAAC
chr2	233132354	233132793	233424110	233424549	+	11	439	4	L1PA2	"COLO1T,COLO1N"	15	452	"AluJb,AT_rich,MIRb"		EIF4E2		c2p233132573FS	TATCTGGAAGCTTCTGTACCTGAG	c2p233132573ES	ATGGAATTATCAGCAGTTTACCAG
chr2	233286885	233287245	233578641	233579001	-	12	360	5	noL1	"COLO1T,COLO1N"	5	66	"MER3,AluY"		"KIAA0642,GIGYF2"		c2p233287065FS	CATCCTTAGGCTTCTTTAGCTATG	c2p233287065ES	AAGCAATGTATTCCAAGACTAAGC
chr2	235184559	235184826	235519820	235520087	+	13	267	5	noL1	"COLO1T,COLO1N"	111	307	"L1MC3,LTR84b"	"LINE:Ewing,Iskow"			c2p235184692FS	TTCCATGTGCATCAGTAGATAGAC	c2p235184692ES	TAATTGCTCAGTCTCAGGTATGTC
chr2	236015675	236016078	236350936	236351339	-	28	403	2	noL1	"COLO1T,COLO1N"	4	401	"L1MCa,AluSq"				c2p236015876FS	TTTAGTAGAGATGGGGTTTCACTG	c2p236015876ES	AGAAATCAGACAGAAGAGAACAGC
chr2	236956665	236957075	237291926	237292336	-	3771	410	18	L1PA2	"COLO1T,COLO1N"	12952	418	"L1PA2,L1M3e"		IQCA1		c2p236956870FS	AGGTTTTGGAGTACTGATCTAACG	c2p236956870ES	TCATTCTCAGTAAACTATCGCAAG
chr2	237006808	237007066	237342069	237342327	-	10	258	3	noL1	"COLO1T,COLO1N"	16	387	L1MC4a		IQCA1		c2p237006937FS	TTTCTTGATTTTCTGTTCTTTTCC	c2p237006937ES	GCAAAGGCATTTTACAAATTTAAC
chr2	239290011	239290999	239625272	239626260	-	58213	988	28	L1HS	"COLO1T,COLO1N"	281378	528	"L1HS,AT_rich"				c2p239290505FS	CGTCTTCATTTCTTCACTCTGTC	c2p239290505ES	GAACTGTAAAGAAGCATCATCCTC
chr2	239566977	239567396	239902040	239902459	-	134653	419	41	L1HS	"COLO1T,COLO1N"	255523	419	"L1HS,L1ME3B,(T)n,LTR17"				c2p239567186FS	TGTTGGTCAAGGTATTTGTAAAAG	c2p239567186ES	GACCAATCAGGTAGTAAAGAGAGC
chr20	1178854	1179063	1230854	1231063	-	29	209	6	L1PA5	"COLO1T,COLO1N"	210	111	"HAL1,L1PA5"		LOC642636		c20p1178958FS	CTTGTCAACTTTATGGTTGTTTTG	c20p1178958ES	CAGAGTTTGGTCATATTGTCTGAG
chr20	6121698	6121997	6173698	6173997	+	366	299	10	L1PA2	"COLO1T,COLO1N"	954	298	"L1PA2,MamRep1527"				c20p6121847FS	ATGCAATAAGAAAAGGAGTAGTGG	c20p6121847ES	TTCTCAGTAAACTGTTGCAAGAAC
chr20	6147555	6147821	6199555	6199821	+	88	266	7	L1HS	"COLO1T,COLO1N"	217	256	"L1HS,L1M5"				c20p6147688FS	CTTGTGAACAGTCCTGTATGAGTC	c20p6147688ES	TAAATAAAGTGGGAATCAGGAGAC
chr20	6897312	6897430	6949312	6949430	-	17	118	2	L1PA3	"COLO1T,COLO1N"	126	126	L1PA3				c20p6897371FS	GACGAAAATGGATAGAAACAAAAC	c20p6897371ES	TATACACCGTGGAATACTATGCAG
chr20	7044430	7044866	7096430	7096866	-	2551	436	28	L1HS	"COLO1T,COLO1N"	4798	452	"L1HS,(T)n"	LINE:dbRIP			c20p7044648FS	AAAAAGTTGTATTTCACACTTCCC	c20p7044648ES	TCATTCTCAGTAAACTATCGCAAG
chr20	7227355	7227736	7279355	7279736	-	2020	381	9	L1PA2	"COLO1T,COLO1N"	5143	439	"L1MB3,L1PA2"				c20p7227545FS	TGTTTTTCTTTTCCAGTAATAGCC	c20p7227545ES	TCATTCTCAGTAAACTATCGCAAG
chr20	7286001	7286104	7338001	7338104	-	121	103	4	noL1	"COLO1T,COLO1N"	3	65	L2c		BC043288		c20p7286052FS	AAGCCATCATATTTCGTTACTTTC	c20p7286052ES	AAAACACTTTGAGTCACTTATGGC
chr20	7674664	7675083	7726664	7727083	+	846	419	13	L1HS	"COLO1T,COLO1N"	2239	426	"L1HS,THE1D"				c20p7674873FS	TGACAAGAGTAGTTGCATTTTCTG	c20p7674873ES	TGGGAGATATACCTAATGCTAGATG
chr20	7689876	7689983	7741876	7741983	+	880	107	6	noL1	COLO1T	0	0					c20p7689929FS	TAATTAAGAATATACTGCGCCTCC	c20p7689929ES	CAATCCAGAGTTTCATTCCTTATC
chr20	8523505	8523695	8575505	8575695	-	52	190	4	L1PA2	"COLO1T,COLO1N"	50	302			PLCB1		c20p8523600FS	GCAGAACCTGATGAAGTAGGTTAG	c20p8523600ES	TCATTCTCAGTAAACTATCGCAAG
chr20	9425611	9425821	9477611	9477821	-	59	210	2	noL1	"COLO1T,COLO1N"	119	217	"AluJr4,MLT2D"	"LINE:Beck,Ewing,Iskow,Stewart"			c20p9425716FS	GTTAGCGGTAGCTAACTTTAATGG	c20p9425716ES	AGCCGTTTATAACTAAACATGTCC
chr20	9635080	9635181	9687080	9687181	-	10	101	3	noL1	"COLO1T,COLO1N"	18	273	AluJb		PAK7		c20p9635130FS	GAAATCCATGAATTGAAAATTACC	c20p9635130ES	AAATGGGAAGATGAACAAAGTTAG
chr20	11567401	11567916	11619401	11619916	+	813	515	37	L1HS	"COLO1T,COLO1N"	7430	676	"L1HS,AT_rich,L1MA4A"				c20p11567658FS	AAAGTGGGATTGTTGGATAATATG	c20p11567658ES	TCATTCTCAGTAAACTATCGCAAG
chr20	12729199	12729691	12781199	12781691	-	8162	492	15	L1HS	"COLO1T,COLO1N"	14749	570	"L2a,L1HS,LTR9,L2"	LINE:dbRIP			c20p12729445FS	ACATGTCTAGTCCTTAGTTCCTGC	c20p12729445ES	ACACCGCATATTCTCACTCATAG
chr20	13299698	13299959	13351698	13351959	-	23	261	4	noL1	"COLO1T,COLO1N"	425	100	L1MEf				c20p13299828FS	GGTAAAATGAGGTCATTAGAGTGG	c20p13299828ES	TGTATGTCAGGCTATACAACAAGC
chr20	14165953	14166215	14217953	14218215	-	1221	262	13	L1PA4	"COLO1T,COLO1N"	4621	355	"L1MEe,L1PA4"		MACROD2		c20p14166084FS	GTTGTTGCTGATGAGAAGTGTTAG	c20p14166084ES	GACTGGATTAAGAAAATGTGGC
chr20	16427011	16427448	16479011	16479448	-	362	437	5	noL1	"COLO1T,COLO1N"	423	456	L1MC4a	LINE:Ewing	KIF16B		c20p16427229FS	CGAAGAAGTGTAAAGATTGATGTG	c20p16427229ES	TCAGTATACAGATACCAGGTGTGG
chr20	16443177	16443579	16495177	16495579	+	11	402	5	noL1	"COLO1T,COLO1N"	32	394	"AluSx,(A)n"		KIF16B		c20p16443378FS	CCGTATGCAGTTTTATAAGCTATG	c20p16443378ES	ATAAAAGGAAATGTGAAACTCTCG
chr20	16918151	16918417	16970151	16970417	+	165	266	7	L1PA4	"COLO1T,COLO1N"	464	355	L1PA4				c20p16918284FS	CAAAGAGTAATTGCACTGTTTCAG	c20p16918284ES	TACTAATGTGAAATGACAGCCTTG
chr20	18878257	18878662	18930257	18930662	-	174	405	12	L1HS	"COLO1T,COLO1N"	920	443	"L1HS,AT_rich,MLT1A"				c20p18878459FS	AACAAAATATGATAGACTGGGAGG	c20p18878459ES	TCATTCTCAGTAAACTATCGCAAG
chr20	19016255	19016565	19068255	19068565	-	110	310	20	L1PA2	"COLO1T,COLO1N"	431	444	"L1PA2,MIR"				c20p19016410FS	TTGAACCTATCCTCTCTCCTTATG	c20p19016410ES	TCATTCTCAGTAAACTATCGCAAG
chr20	19348016	19348471	19400016	19400471	-	8884	455	29	L1HS	"COLO1T,COLO1N"	41149	511			SLC24A3		c20p19348243FS	AAACAGTTGATGAGAGAAGGTTTC	c20p19348243ES	TAATGCTAGATGACACGTTAGTGG
chr20	20086880	20087017	20138880	20139017	+	24	137	4	L1PA2	"COLO1T,COLO1N"	58	71	"L1PA2,L1ME1"		C20orf26		c20p20086948FS	CTTTCACTCAGCATGTTTACTTTG	c20p20086948ES	ATGAAAAGACAAGCTACAGACTGG
chr20	20334028	20334138	20386028	20386138	-	24	110	2	noL1	"COLO1T,COLO1N"	2024	867			C20orf74		c20p20334083FS	CTAATACAAACGAGGCAAGTTTTC	c20p20334083ES	GTGAATAGAAAGGAGGACAGAAAG
chr20	23360727	23361275	23412727	23413275	+	5495	548	29	L1HS	"COLO1T,COLO1N"	9147	475	"L1HS,AT_rich,AluJo"				c20p23361001FS	ATGTGAGAAATAAACCATTTTTCC	c20p23361001ES	ACACCGCATATTCTCACTCATAG
chr20	23643368	23643698	23695368	23695698	-	44	330	6	L1PA3	"COLO1T,COLO1N"	192	476	"L1PBa,MLT1I"				c20p23643533FS	TTTAAGGAACTGTTAAGATCCTGC	c20p23643533ES	AAAAACTAAACACCGCATATTCTC
chr20	26197174	26197547	26249174	26249547	+	36	373	4	noL1	"COLO1T,COLO1N"	86	370	L1MA4				c20p26197360FS	AGAATTCTACACTCGACTTTGACC	c20p26197360ES	ACAATTAGATGGAAGGAACAGAAG
chr20	26252652	26253299	26304652	26305299	-	31	647	6	noL1	"COLO1T,COLO1N"	42	641	ALR/Alpha				c20p26252975FS	GTTTTCTTTGGAAACAGGAATATC	c20p26252975ES	TGTTTCAAAACTGCTCTATGAAAG
chr20	26262137	26262936	26314137	26314936	-	36	799	6	noL1	"COLO1T,COLO1N"	133	799	ALR/Alpha				c20p26262536FS	TCTCAGAAACTTCTTTGTGATGTG	c20p26262536ES	TCCAAAGAAAGCCTCATATCTATC
chr20	28085891	28086127	29472230	29472466	-	20	236	2	L1HS	"COLO1T,COLO1N"	16	173	L1HS				c20p28086009FS	TGCTTCTAAAAATAGTCAGTGTGC	c20p28086009ES	CTTCTAGGGTTTTTATGGTTTCAC
chr20	28205217	28205584	29591556	29591923	+	172	367	12	noL1	"COLO1T,COLO1N"	129	410		LINE:Ewing			c20p28205400FS	AACTTTTTGTGAAACTTCTTCCTG	c20p28205400ES	CTAAGGAAATGTAAACTGGAGGAG
chr20	29937978	29938418	30474317	30474757	+	363	440	12	noL1	"COLO1T,COLO1N"	9	103	"AluSx1,(CAA)n"	LINE:Iskow	TTLL9		c20p29938198FS	GTAACTGGTTTTGTATATCTGCCC	c20p29938198ES	AATTTCGATTTCTCTCTTCATACG
chr20	33422871	33422973	33959457	33959559	+	268	102	3	noL1	"COLO1T,COLO1N"	2196	69	"AluJr,(A)n"		"C20orf44,UQCC,GDF5"		c20p33422922FS	TTTTAGTAGAGACGAGGTTTCACC	c20p33422922ES	TAAATAGACATCTGAGGATGAGGG
chr20	34471226	34471558	35037812	35038144	-	13	332	4	L1PA8	"COLO1T,COLO1N"	15	70	"AluSx,(T)n"		DLGAP4		c20p34471392FS	TTTTTGTATTCTTAGTAGAGGCGG	c20p34471392ES	GAGTCTAACTCTGTCGCCCAG
chr20	35017924	35018155	35584510	35584741	+	24	231	2	noL1	"COLO1T,COLO1N"	95	66	AluJb				c20p35018039FS	GAGTAGTTGGGACTACAGGCATAC	c20p35018039ES	AAAAATACAAAAATTAGCCAGGTG
chr20	35063540	35063755	35630126	35630341	+	46	215	5	noL1	"COLO1T,COLO1N"	72	215	"SVA_D,(A)n"		RBL1		c20p35063647FS	CACACCTGTAATTCTAGCATTTTG	c20p35063647ES	TAGAAAGAGGTAGACATGGGAGAC
chr20	36173946	36174046	36740532	36740632	-	20	100	2	noL1	"COLO1T,COLO1N"	78	156	"(TTCC)n,AluJr4"				c20p36173996FS	TAGGTGGTGACAGAAGGTAGATG	c20p36173996ES	CCACTGGGTAACTCTGTAATGAAC
chr20	39582866	39583131	40149452	40149717	+	10	265	3	L1PA4	"COLO1T,COLO1N"	2	69	"L1PA4,L1MC4"		"CHD5,CHD6"		c20p39582998FS	CAGAATTGGTTTGCTATACTTTCC	c20p39582998ES	TGATGAGTTCATGTTCTTTGTAGG
chr20	39676008	39676402	40242594	40242988	-	123	394	9	noL1	"COLO1T,COLO1N"	145	378			"CHD5,CHD6"		c20p39676205FS	TTAGTATGTTTTGTATGCTGGTGG	c20p39676205ES	TTATTCATTATGTTGTTTGCCATC
chr20	40274319	40274518	40840905	40841104	+	22	199	6	L1PA2	"COLO1T,COLO1N"	63	209	"L1PA2,(A)n"		PTPRT		c20p40274418FS	AGCATTTATTGAGTGCTTACTGTG	c20p40274418ES	CAAATGTCCAACAATGATAGACTG
chr20	40676930	40677042	41243516	41243628	-	11	112	4	L1PA2	"COLO1T,COLO1N"	12	421	"THE1B,L1PA2"		PTPRT		c20p40676986FS	GGAGAAAACTGTACAATCTCCAAG	c20p40676986ES	GAAATGTCCAACAATGATAGACTG
chr20	41384993	41385538	41951579	41952124	-	3541	545	16	noL1	"COLO1T,COLO1N"	10540	594	"MLT1D,MIRb"	"LINE:Ewing,Iskow,Stewart"			c20p41385265FS	TCTCAAAAGTGTGAGAGAACTTCC	c20p41385265ES	AAATCCCACTTTAACTTTCATCAG
chr20	41433752	41433886	42000338	42000472	+	590	134	7	L1PA3	"COLO1T,COLO1N"	1549	378	"L1PA3,AluSx"				c20p41433819FS	TTACAATAAACAGATGCAGAATGC	c20p41433819ES	GATGAGTTTATGTCCTTTGTAGGG
chr20	41457717	41458097	42024303	42024683	-	5041	380	34	L1HS	"COLO1T,COLO1N"	20441	381	"AluJb,L1HS,(T)n,MIRc"	LINE:dbRIP			c20p41457907FS	TACCTAGTGCATAACAATAGCTGC	c20p41457907ES	TCATTCTCAGTAAACTATCGCAAG
chr20	43703856	43704105	44270442	44270691	-	21	249	4	noL1	"COLO1T,COLO1N"	27	189	L1MA8				c20p43703980FS	AAATGAGTTTGGATGTATTTCCTC	c20p43703980ES	AACTATATTTTCTGACCACAATGG
chr20	46955042	46955144	47521635	47521737	-	26	102	2	noL1	"COLO1T,COLO1N"	139	105	(T)n				c20p46955093FS	CTGAAATCACTTCTAGGAAGGAAC	c20p46955093ES	AATTTAGACAGTTAAGGGCACAAG
chr20	49623227	49623459	50189820	50190052	+	66	232	6	L1PA3	"COLO1T,COLO1N"	538	368	"L1PA3,MIR"				c20p49623343FS	GAAGCTGGGGTTTCTTATCTTC	c20p49623343ES	ACTAAAAATACAAAAATTAGCCCG
chr20	51213024	51213424	51779617	51780017	-	2283	400	37	L1HS	"COLO1T,COLO1N"	8511	847	"MLT1F2,L1HS,(T)n"		TSHZ2		c20p51213224FS	AGTTAATTTCAGAGTTGGAAGCAG	c20p51213224ES	TTAACTCATGTAGTTTTTGGCAAG
chr20	51319699	51319965	51886292	51886558	+	14	266	5	L1HS	"COLO1T,COLO1N"	41	219	"L1HS,AT_rich"		TSHZ2		c20p51319832FS	TGGTACTCCACATCAGTCATTAAC	c20p51319832ES	AAAATGGAATGTAGCATTAACCTG
chr20	53873929	53874494	54440522	54441087	+	6985	565	40	L1HS	"COLO1T,COLO1N"	13338	730	"L2a,L1HS,MLT1D,(A)n,L1PA16"	"LINE:dbRIP,LINE:Iskow"			c20p53874211FS	TGCCTCTATAACCCTACGTACTTC	c20p53874211ES	TGGGAGATATACCTAATGCTAGATG
chr20	59565977	59566181	60132582	60132786	-	121	204	6	noL1	"COLO1T,COLO1N"	172	200		"LINE:Ewing,Iskow,Stewart"	CDH4		c20p59566079FS	GGAGTACGTATTTTAGGCATCATC	c20p59566079ES	AAAACTCGAGCTTGAAAACATAAC
chr21	9752725	9752832	10730854	10730961	+	450	107	5	noL1	"COLO1T,COLO1N"	650	325	ALR/Alpha				c21p9752778FS	CTTCCAATAAAATCTAGGCAGAAG	c21p9752778ES	CATGCAGATTCTACAAAAAGATTG
chr21	14498020	14498497	15576149	15576626	+	11	477	2	L1PA4	"COLO1T,COLO1N"	23	385	"L1PA11,L1PA4"		LIPI		c21p14498258FS	TTCTTATACAGTTTCTGCCTCTCC	c21p14498258ES	GGAGGGATAGCATTAGGAGATATAC
chr21	15179470	15179858	16257599	16257987	+	163	388	8	noL1	"COLO1T,COLO1N"	1080	405	MLT1A	"LINE:Ewing,Iskow"			c21p15179664FS	ATCAGTCTGGACTACAGGTCTAGG	c21p15179664ES	TGGAAAAGATTTCAAAGTTTCTAAC
chr21	15555432	15555658	16633561	16633787	-	13	226	4	L1PA3	"COLO1T,COLO1N"	45	127	L1PA3				c21p15555545FS	CATTAAATTCGAAAAAGGAGAAAG	c21p15555545ES	TAAGAAAAGGTGGCACATATACAC
chr21	15850799	15850909	16928928	16929038	+	16	110	3	noL1	"COLO1T,COLO1N"	34	379	L1PA3				c21p15850854FS	GGACAATATATGTTTCATCACAGC	c21p15850854ES	ATTAAAAAGTCAGGAAACAACAGG
chr21	16838085	16838634	17916214	17916763	-	113	549	17	L1HS	"COLO1T,COLO1N"	3646	549	L1HS		C21orf34		c21p16838359FS	ACCTTACGATAAACTTGGTTTCAG	c21p16838359ES	ACACCGCATATTCTCACTCATAG
chr21	17599044	17599678	18677173	18677807	-	5937	634	47	L1HS	"COLO1T,COLO1N"	21751	635	"L1HS,HERV9-int"				c21p17599361FS	AATGAAAACAACAAATTCACACAC	c21p17599361ES	TAATGCTAGATGACACGTTAGTGG
chr21	18438806	18439208	19516935	19517337	-	216	402	15	noL1	"COLO1T,COLO1N"	1805	569			CHODL		c21p18439007FS	AGCTTGTTCCAATTATCACTCTTC	c21p18439007ES	TTTGTATTTTTAGTAGAGACGGGG
chr21	19303597	19303740	20381726	20381869	+	22	143	5	L1HS	"COLO1T,COLO1N"	55	459	"L1HS,L1MC1"				c21p19303668FS	TCCCTTAGTTTGTGGTTTATCTTC	c21p19303668ES	CAAATGTCCAACAATGATAGACTG
chr21	20493229	20493727	21571358	21571856	-	281	498	9	L1HS	"COLO1T,COLO1N"	388	335	"L1MD1,L1HS"				c21p20493478FS	ATTATTCACCAATAAAAATGAGCC	c21p20493478ES	TCATTCTCAGTAAACTATCGCAAG
chr21	22003826	22003957	23081955	23082086	+	15681	131	33	L1PA4	"COLO1T,COLO1N"	37365	421	"L1PA4,(TAAAA)n"				c21p22003891FS	CGTTTAATCTATATCTCCACCCAC	c21p22003891ES	ACAATAGTAGACTTGGAACCAACC
chr21	23046966	23047316	24125095	24125445	+	16421	350	50	L1HS	"COLO1T,COLO1N"	56704	350	L1HS				c21p23047141FS	TGAATTATGAATGTTTCTTGGTTG	c21p23047141ES	GATGAGTTCATATCCTTTGTAGGG
chr21	24972697	24973154	26050826	26051283	+	364	457	11	L1PA4	"COLO1T,COLO1N"	1105	371	"AluJb,L1PA4,MLT1A0"				c21p24972925FS	AGAAGTGTTCATGTTTATCTTGCC	c21p24972925ES	AACACCTCATGTTCTCACTCATAG
chr21	25328092	25328465	26406221	26406594	-	437	373	9	L1PA3	"COLO1T,COLO1N"	669	454	"MSTD,L1PA3"		BC040319		c21p25328278FS	CTCTTCAATAGTTGGAATCATGTC	c21p25328278ES	TCATTCTCAGTAAACTATCGCAAG
chr21	25747210	25747738	26825339	26825867	+	8084	528	39	L1HS	"COLO1T,COLO1N"	39489	528	"L1HS,L2c"	LINE:dbRIP			c21p25747474FS	TGGTTCTATTTCTCTAGACAACCC	c21p25747474ES	CACAGAGTGCTTGGTAAAGTGTAG
chr21	26679316	26679727	27757445	27757856	+	90	411	7	L1PA3	"COLO1T,COLO1N"	400	415	"L1PA3,AT_rich,MER5B"				c21p26679521FS	ACTGGGAGACACACTAAAGAAAAC	c21p26679521ES	TGTGTTAGAGGAACATAGCTGAAG
chr21	27990916	27991470	29069045	29069599	+	37690	554	68	noL1	"COLO1T,COLO1N"	124252	554	"L1PA11,L2a"	"LINE:Ewing,Iskow"			c21p27991193FS	TGACATTATATTTCTATTGGACGG	c21p27991193ES	CTTACATGTCCATGTGTTCTCATC
chr21	28214968	28215183	29293097	29293312	+	1200	215	12	noL1	"COLO1T,COLO1N"	4214	418	"AluYa5,THE1D"	LINE:Iskow			c21p28215075FS	TAATTTTAAGCAACACGATGAGAG	c21p28215075ES	TTTCAAGAATTTACCATGTGACAG
chr21	28959428	28959656	30037557	30037785	-	338	228	22	L1HS	"COLO1T,COLO1N"	735	219	"AluJb,L1HS,(T)n"				c21p28959542FS	ATTCACTCCTAAGCTTTTCAATTC	c21p28959542ES	TGGGTCAAATGGTATTTCTAGTTC
chr21	29025915	29026183	30104044	30104312	+	177	268	10	L1PA3	"COLO1T,COLO1N"	465	280	L1PA3	LINE:Ewing			c21p29026049FS	AAAGAACACTAACTGTGACAGCAC	c21p29026049ES	TTATACTTGCCCATGAAAATATCC
chr21	31135983	31136453	32214112	32214582	+	12070	470	23	L1HS	"COLO1T,COLO1N"	61749	688	"L1HS,AluSq2,A-rich"	LINE:dbRIP			c21p31136218FS	TCTAGCCGAGTGTAGAAAAAGTTC	c21p31136218ES	TCATTCTCAGTAAACTATCGCAAG
chr21	31225420	31225579	32303549	32303708	+	69	159	3	L1PA3	"COLO1T,COLO1N"	1616	276	"L1PA3,HSMAR2"				c21p31225499FS	AGCTATCAATTTTAAAAGAACCCC	c21p31225499ES	CAAATGTCCAACAATGATAGACTG
chr21	39565753	39566120	40643883	40644250	+	18	367	5	L1PA8	"COLO1T,COLO1N"	68	79	"L1PA8,AluSx1,AluY"		"BRWD1,WDR9"		c21p39565936FS	AGCAATGTTATTACTTCAAAAGCC	c21p39565936ES	CATGGTAGCTCACACCTATAATCC
chr21	39997700	39998127	41075830	41076257	-	14	427	2	L1PA7	"COLO1T,COLO1N"	3	427	L1PA7				c21p39997913FS	GTGGTTAGTTATTGTGAAAGTGGG	c21p39997913ES	GTGGGAGTGTAAATTAGTTCAACC
chr21	40612098	40612499	41690228	41690629	+	289	401	12	L1PA3	"COLO1T,COLO1N"	2064	423	L1PA3		DSCAM		c21p40612298FS	AGAGGCTAAGAAGGGAAACTAATG	c21p40612298ES	AGTATTCCATGGTGTATATGTGCC
chr22	15341683	15342293	16961683	16962293	+	1197	610	11	L1PA2	"COLO1T,COLO1N"	5537	612	"L1MEd,L1PA2"				c22p15341988FS	ATCAATTCTGTAAAATTTGAAGCC	c22p15341988ES	CTAATGATAGATGACACGTTGGTG
chr22	15626032	15626247	17246032	17246247	+	36	215	7	noL1	"COLO1T,COLO1N"	67	405	L1MB3	"LINE:Beck,Ewing,Iskow"			c22p15626139FS	GAGTATCTGGGATTATAGGCACAC	c22p15626139ES	ATTTTGCAATTATCTTTGTTCTCC
chr22	17091966	17092386	18711966	18712386	+	3989	420	10	L1HS	"COLO1T,COLO1N"	19799	420	"L1M4c,L1HS"	LINE:dbRIP			c22p17092176FS	AACTTGAGCACCACTTCTAACTTC	c22p17092176ES	GATGAGTTCATATCCTTTGTAGGG
chr22	20815875	20816392	22485875	22486392	-	460901	517	26	noL1	"COLO1T,COLO1N"	2065413	522	LTR9	"LINE:Beck,Ewing,Iskow,Stewart"	abParts		c22p20816133FS	AATACCTGAGGTTTGTCATCTCAC	c22p20816133ES	TTTAAATCAACATGTAATTGGCAG
chr22	21045577	21045975	22715577	22715975	+	3070	398	16	noL1	"COLO1T,COLO1N"	10949	635	L1PB1	"LINE:Ewing,Iskow"	abParts		c22p21045776FS	TATTCCATTAGTTCTTTCCCTCTG	c22p21045776ES	TGAGTTCTTGATTTGATATTCAGC
chr22	22921348	22921702	24591348	24591702	+	881	354	11	L1PA3	"COLO1T,COLO1N"	2189	401	"L1PA3,AluSc"				c22p22921525FS	GAAGTTCTCTATCTGCCTGAAGTC	c22p22921525ES	TCATTCTCAGTAAACTATCGCAAG
chr22	23100710	23101090	24770710	24771090	+	29	380	3	L1PA4	"COLO1T,COLO1N"	35	65	"L1MB5,L1PA4"		CYTSA		c22p23100900FS	CTGCTGGATATTGTCATTATTTTG	c22p23100900ES	AACACTGCATGTTCTCACTCATAG
chr22	25631585	25631809	27301585	27301809	+	22	224	7	L1PA13	"COLO1T,COLO1N"	555	261	"GA-rich,L1PA13"				c22p25631697FS	ATAAAAATTCAGCTTCTCAGTTGC	c22p25631697ES	GATAAAGAGAGGAGAGAGGAGAGG
chr22	26765618	26765833	28435618	28435833	+	12	215	3	L1PA5	"COLO1T,COLO1N"	27	215	"L1PA5,L1PA6"		TTC28		c22p26765725FS	TCTATTCAGGGATTCAACTTCTTC	c22p26765725ES	CTACTCACAATAGCAAACACTTGG
chr22	26797449	26797757	28467449	28467757	+	922	308	8	L1PA2	"COLO1T,COLO1N"	3343	311	L1PA2		TTC28		c22p26797603FS	CTAACATCCACATCTCAAAACTTG	c22p26797603ES	ACAAAAATTAAGAAAAACACCCAG
chr22	26815694	26816156	28485694	28486156	+	58	462	3	L1PA3	"COLO1T,COLO1N"	132	462	"L1ME4a,(TAAAA)n,L1PA4"		TTC28		c22p26815925FS	AGCCAAATGTTTAATCACATAGAC	c22p26815925ES	GGAGGGATAGCATTAGGAGATATAC
chr22	27112247	27112811	28782247	28782811	-	24	564	4	L1PA3	"COLO1T,COLO1N"	40	421	"AluYa8,L2a,(TTTTG)n"				c22p27112529FS	GAAACCCCGTCTCTACTAAAACTAC	c22p27112529ES	AATGCTAGATGACAAGTTAGTGGG
chr22	27337167	27337547	29007167	29007547	-	5675	380	14	L1HS	"COLO1T,COLO1N"	47403	248	"L1HS,L1PA6"				c22p27337357FS	AATATGGGACTATGTGAAAAGACC	c22p27337357ES	CATTTGCTTGTCTAAAATGATGAG
chr22	27395249	27395615	29065249	29065615	+	4164	366	25	L1HS	"COLO1T,COLO1N"	8584	366	L1HS	LINE:dbRIP			c22p27395432FS	TCACTAAGCATGTATGTGGAAAAC	c22p27395432ES	GATGAGTTCATATCCTTTGTAGGG
chr22	29566041	29566324	31236041	31236324	+	13	283	6	L1PA2	"COLO1T,COLO1N"	16	67	"L1P1,L1PA3,L1PA2,(A)n,L2c"		OSBP2		c22p29566182FS	TTACATGTACACATCTGGTAAGGG	c22p29566182ES	TAGATTCTGGATATTAGCCCTTTG
chr22	32850111	32850653	34520111	34520653	-	27	542	2	noL1	"COLO1T,COLO1N"	22	65	"MER39B,L1ME1,L1PA7"				c22p32850382FS	CATTAGATCATAGCCTTTTTGTCC	c22p32850382ES	CTAAACATATACCACCTCACCAAG
chr22	33275236	33275680	34945236	34945680	-	3405	444	17	L1HS	"COLO1T,COLO1N"	9652	506	"L1MEd,L1HS,(T)n,MER91C"				c22p33275458FS	AGGTTCAGAAGTAGCAATGTTAGG	c22p33275458ES	GGGAGACATACCTAATGCTAGATG
chr22	33284700	33285340	34954700	34955340	-	11	640	2	noL1	"COLO1T,COLO1N"	4	186	L1PA4				c22p33285020FS	TAGGTATATCTCCTAATGCCATCC	c22p33285020ES	ATACTCATCTGACAAAGGGCTAAC
chr22	37112163	37112407	38782217	38782461	+	708	244	9	L1PA3	"COLO1T,COLO1N"	5046	448	L1PA3		"LOC400927,CSNK1E,CKIe"		c22p37112285FS	ATGAGGTACAATGTGATGTTTCAG	c22p37112285ES	TCATTCTCAGTAAACTATCGCAAG
chr22	41872819	41873310	43542875	43543366	+	33	491	7	L1PA16	"COLO1T,COLO1N"	57	73	"HAL1,AluSx,L1PA16"				c22p41873064FS	GGAAGCTCATTCTTTACTTTTCAG	c22p41873064ES	CAGCTAGAGGCCATTATCCTAAG
chr22	42655628	42655801	44324295	44324468	-	1079	173	8	noL1	"COLO1T,COLO1N"	2593	373	MER5A	"LINE:Ewing,Iskow,Stewart"	"PNPLA3,SAMM50"		c22p42655714FS	AATACCAAAACACCATTAAATTCAG	c22p42655714ES	CTCTGAAGGAAGGAGGGATAAG
chr22	45775855	45776034	47397191	47397370	-	44	179	6	noL1	"COLO1T,COLO1N"	68	74	"MER6A,AluSq2,(T)n"		TBC1D22A		c22p45775944FS	ATCTACAAAATAAGGACTTCCTGG	c22p45775944ES	TTATTTAATTCCACTTAGCCATGAG
chr22	48771209	48771310	50429082	50429183	-	14	101	5	noL1	"COLO1T,COLO1N"	21	101	"(TG)n,L1M4"		BC032894		c22p48771259FS	CTGTAATCTTAGCACTTTGGGAG	c22p48771259ES	TGAACTCTTCACTTCTTTCTTTTC
chr3	630919	631459	655919	656459	-	46646	540	76	noL1	"COLO1T,COLO1N"	198241	1256	AT_rich	LINE:Ewing	AK126307		c3p631189FS	CTCTCTCTAAAGCATGAGCTTTTC	c3p631189ES	ATTCAATAATCCAGCTGTTAGCTC
chr3	916178	916609	941178	941609	+	20	431	3	L1PA4	"COLO1T,COLO1N"	20	431	"L1PA4,MIRc"				c3p916393FS	ACCATCTTGCTAACATTACTCTCC	c3p916393ES	AAAACTAAGGCCTAGCATTAAGAG
chr3	1872831	1872981	1897831	1897981	-	1831	150	9	noL1	COLO1T	0	0					c3p1872906FS	AAATTTTCCAATAAGCACAAATTC	c3p1872906ES	ATCTTTCCACTGAATCTACAAACC
chr3	2025138	2025565	2050138	2050565	+	346552	427	58	L1HS	"COLO1T,COLO1N"	680722	587	"L1HS,MER58A"	LINE:dbRIP			c3p2025351FS	AAAAGTGAAAAATGGTTCAGAGTC	c3p2025351ES	GATGAGTTCATATCCTTTGTAGGG
chr3	3149325	3149828	3174325	3174828	+	21411	503	32	L1HS	"COLO1T,COLO1N"	54166	504	"L1HS,A-rich"		TRNT1		c3p3149576FS	TACAGATGGGATTTCACTATGTTG	c3p3149576ES	TCATTCTCAGTAAACTATCGCAAG
chr3	3985774	3986424	4010774	4011424	+	6805	650	23	L1HS	"COLO1T,COLO1N"	15127	717	"MLT1G1,L1HS,MIRb"		SUMF1		c3p3986099FS	AAAATATTGCAGCTCTTTATCCAC	c3p3986099ES	TGGGAGATATACCTAATGCTAGATG
chr3	4054972	4055957	4079972	4080957	-	86700	985	23	L1HS	"COLO1T,COLO1N"	189897	700	"L1HS,L1PREC2,L1M5"	LINE:dbRIP	SUMF1		c3p4055464FS	ATAAGACACTTACGGTCTTTGCTC	c3p4055464ES	AAAAATTTGCATAGATGTTTCAGG
chr3	4939254	4939688	4964254	4964688	+	1621	434	18	L1HS	"COLO1T,COLO1N"	13031	489	"AT_rich,MIR3"		"AK056892,AK311646"		c3p4939471FS	ATCCAGGTTAAATATTTTTGGAAG	c3p4939471ES	TAATGCTAGATGACACGTTAGTGG
chr3	5261451	5261988	5286451	5286988	+	11	537	2	L1PA7	"COLO1T,COLO1N"	122	73	"LTR84b,L1PA7"				c3p5261719FS	GGAAAGGTTGAGATTCTTCAATAG	c3p5261719ES	GGAAATAGGAATGCTTTTACACTG
chr3	5928334	5928712	5953334	5953712	-	479	378	8	L1PA3	"COLO1T,COLO1N"	3630	367	"L1MDa,L1PA3,L1PA16"				c3p5928523FS	ATGTGCAAATGAGAAGAATGTATG	c3p5928523ES	TCATTCTCAGTAAACTATCGCAAG
chr3	6163086	6163421	6188086	6188421	-	15	335	5	L1PA3	"COLO1T,COLO1N"	116	429	"L1MD1,L1PA3"				c3p6163253FS	TGAGTCCAGATGTTCATTCTAGTG	c3p6163253ES	TAGACTGGATTAAGAAAATGTGGC
chr3	6903602	6903873	6928602	6928873	-	79	271	6	L1PA6	"COLO1T,COLO1N"	350	274	MIR		GRM7		c3p6903737FS	GAATATTTGTTGAATGAACACCTG	c3p6903737ES	TCATTCTCAGTAAACTATCGCAAG
chr3	7321717	7322087	7346717	7347087	-	1289	370	17	L1HS	"COLO1T,COLO1N"	2270	185	"HAL1,L1HS"	LINE:dbRIP	GRM7		c3p7321902FS	TTTCCCATATATTATCTCTGCTCC	c3p7321902ES	TCATTCTCAGTAAACTATCGCAAG
chr3	8353229	8353337	8378229	8378337	+	53	108	3	L1PA3	"COLO1T,COLO1N"	110	110	"L1PA3,L2c"		BC020876		c3p8353283FS	CAAGCTGTCATAATGTATACTGGC	c3p8353283ES	CAAATGTCCAACAATGATAGACTG
chr3	11948402	11949501	11973402	11974501	+	30	1099	5	L1PA4	"COLO1T,COLO1N"	41	1099	"(TAAA)n,L1PA4"				c3p11948951FS	ACATTCTGCCTTTCACTAGGTAAC	c3p11948951ES	ATTAAAAAGTCAGGAAACAACAGG
chr3	12114095	12114705	12139095	12139705	+	115	610	6	L1PA5	"COLO1T,COLO1N"	234	817	"L1PA5,AluY,L1MB7"		SYN2		c3p12114400FS	TCTTAGCATTTTGAATGTGTCATC	c3p12114400ES	TGAAACCCCTTCTCTACTAAAAATAC
chr3	13743703	13743803	13768702	13768802	-	10	100	5	noL1	"COLO1T,COLO1N"	1	65	L1MDa		BC039529		c3p13743753FS	ATCTTGATTTTCTCTTCGTTTCTG	c3p13743753ES	AATGTATCACACAAAATGTTCAGG
chr3	13935544	13935845	13960543	13960844	+	176	301	4	L1PA3	"COLO1T,COLO1N"	1014	377	L1PA16				c3p13935694FS	AAATCTTAAGCAAAAAGAGCAAAG	c3p13935694ES	AAACTAGAAACCATCATTCTCAGC
chr3	15353577	15353766	15378573	15378762	-	11	189	2	noL1	"COLO1T,COLO1N"	12	65	AluSx1		SH3BP5		c3p15353671FS	TATAGTCTCCAAATCATTCCCATC	c3p15353671ES	AGGAATTTGTCATCTACATGTTTG
chr3	17695112	17695591	17720108	17720587	+	80	479	10	L1PA5	"COLO1T,COLO1N"	184	74	HAL1		TBC1D5		c3p17695351FS	TCCATTTACCTTCTGTTTTAGGAG	c3p17695351ES	AGATTAACCACATGAAATTGCTTC
chr3	17874173	17874579	17899169	17899575	-	8002	406	35	L1HS	"COLO1T,COLO1N"	28942	429	"L1PA2,L1MA3"				c3p17874376FS	TTTGGGCATATCTCTCTTTTTAAC	c3p17874376ES	GTCTTGTAGAGATCACATGGACAC
chr3	18027206	18027728	18052202	18052724	+	34	522	2	noL1	COLO1T	0	0	"T-rich,MIRb"		BC035826		c3p18027467FS	GCAGATACTTAAAGAGCCAGATTC	c3p18027467ES	AGGAGAAACAAGTAATGGAGAGAG
chr3	18946611	18947011	18971607	18972007	-	38	400	3	L1PA2	"COLO1T,COLO1N"	219	417	"L1PA2,MSTB"				c3p18946811FS	AGCTTTGAACTTCTATGGAACAAC	c3p18946811ES	AACTCCGCATATTCTCACTCATAG
chr3	19113743	19113884	19138739	19138880	-	10	141	2	L1PA2	"COLO1T,COLO1N"	133	254	"L1PA2,L1PA7"				c3p19113813FS	AGATCAGATGGTTGTAGATGTGTG	c3p19113813ES	CAAATGTCCAACAATGATAGACTG
chr3	19356455	19356903	19381451	19381899	-	2661	448	18	L1HS	"COLO1T,COLO1N"	11392	450	"L1HS,MIR,AT_rich"		KCNH8		c3p19356679FS	TCTTTCAAGTATGTAGCAAAGGTG	c3p19356679ES	TTGAATCCTAATGCTAGATGACAC
chr3	19535920	19536042	19560916	19561038	+	17	122	3	L1PA7	COLO1T	0	0			KCNH8		c3p19535981FS	TAACAAACTGTGTGGATTTACAGC	c3p19535981ES	ACTCAAAATTATTCAACCAAGGAG
chr3	20065168	20065426	20090164	20090422	-	10	258	4	noL1	"COLO1T,COLO1N"	37	360	"MIRb,AluSc"	LINE:Stewart	KAT2B		c3p20065297FS	CTGTTTTGTTTTAGGAAGTGTGTG	c3p20065297ES	GAAACTGAAACTAGGCAGTTAAGG
chr3	20723530	20723778	20748526	20748774	-	143	248	5	noL1	"COLO1T,COLO1N"	220	85	L1ME1	"LINE:Beck,Ewing,Iskow"			c3p20723654FS	TACTAAAATGTGCAAGGAACTCTG	c3p20723654ES	CCACCATATACCTATTAAAATGGC
chr3	21775837	21776308	21800833	21801304	+	8224	471	20	noL1	"COLO1T,COLO1N"	15440	471		"LINE:Ewing,Iskow,Stewart"	ZNF385D		c3p21776072FS	TTCAATTACTTTGTGAATTCTTGC	c3p21776072ES	GTATCTCAGTTGAGGAAATGAAGC
chr3	22072740	22073197	22097736	22098193	+	773	457	27	L1HS	"COLO1T,COLO1N"	3618	569	"L1HS,MLT1H2"	LINE:dbRIP	ZNF385D		c3p22072968FS	TTTTGGTGAAAATGATGTGATTAG	c3p22072968ES	TCATTCTCAGTAAACTATCGCAAG
chr3	24962450	24962874	24987446	24987870	-	2244	424	10	noL1	"COLO1T,COLO1N"	12921	410	AluY	"LINE:dbRIP,Ewing,Iskow,Stewart"			c3p24962662FS	GTATTTCTTGTTCTCCTTGACACC	c3p24962662ES	AAGTGCCAGGATTACCTATGTG
chr3	25253660	25253861	25278656	25278857	-	540	201	7	noL1	"COLO1T,COLO1N"	1732	77		"Alu:Hormozdiari,Iskow,Stewart"			c3p25253760FS	TATTTATCTGGAAGATCTCGCATC	c3p25253760ES	AGTAGAATGGAGAACTGCTAATGG
chr3	25348384	25349172	25373380	25374168	+	21	788	5	noL1	"COLO1T,COLO1N"	14	310	L1PA5				c3p25348778FS	TTTGACTTCCTCTTTTCCTAATTG	c3p25348778ES	GATCCCACAGAAATACAAACTACC
chr3	25715691	25715992	25740687	25740988	-	7808	301	24	L1HS	"COLO1T,COLO1N"	28868	563	"L1HS,ERVL-E-int"				c3p25715841FS	TACTGATTGCTATAGTGAATCCCC	c3p25715841ES	TAAGAAAATGGGGCACATATACAC
chr3	26400781	26401256	26425777	26426252	-	15	475	5	L1PA2	"COLO1T,COLO1N"	75	468	"L1ME3A,L1PA2,AT_rich,AluSq2,(T)n"				c3p26401018FS	GATAGATATTTGAGTTGTTTCGGG	c3p26401018ES	TAGATGACACGTTAGTGGGTACAG
chr3	26414137	26414551	26439133	26439547	-	18558	414	23	L1HS	"COLO1T,COLO1N"	60089	430	L1HS	LINE:dbRIP			c3p26414344FS	ACTATTTAAGCAATAATGGCATGG	c3p26414344ES	TCATTCTCAGTAAACTATCGCAAG
chr3	27110118	27110619	27135114	27135615	+	3208	501	41	L1HS	"COLO1T,COLO1N"	10835	482	"L1HS,(A)n,MER58A,L1M5"				c3p27110368FS	AAGGAGAACATCATCTATACCAGG	c3p27110368ES	TCATTCTCAGTAAACTATCGCAAG
chr3	28081739	28081931	28106735	28106927	+	14	192	2	L1PA3	"COLO1T,COLO1N"	59	662	"L1PA3,L1PA7"				c3p28081835FS	GTGTTCTCACTGTTCAACTACCAC	c3p28081835ES	TAGACTGGATTAAGAAAATGTGGC
chr3	28509305	28509683	28534301	28534679	-	19	378	5	L1PA2	"COLO1T,COLO1N"	79	391	"T-rich,L1PA2"		ZCWPW2		c3p28509494FS	CCATCTTAATGAATTTTCTGAACC	c3p28509494ES	ATGATGAGTTCATGTCCTTTGTAG
chr3	30644609	30645098	30669605	30670094	-	24	489	6	noL1	"COLO1T,COLO1N"	86	492	(T)n		"TGFBR2,Tbeta RIIC"		c3p30644853FS	ATTATAGGCTGTTTCTTTGTCCTG	c3p30644853ES	AAGGTCTCAGAAGTGAGAGAAATG
chr3	31020370	31020650	31045366	31045646	+	2028	280	15	noL1	COLO1T	0	0					c3p31020510FS	ACTGCTATGTCAAATTCCTAGTCC	c3p31020510ES	TTCTCAGGAATATCAGTCTTTTCC
chr3	32295557	32295714	32320553	32320710	-	35	157	8	L1PA2	"COLO1T,COLO1N"	120	164	"L1PA2,MLT1K"		"CKLFSF8,CMTM8"		c3p32295635FS	ACTAAGGGTCAGTCCTGTTTACTG	c3p32295635ES	CAAATGTCCAACAATGATAGACTG
chr3	33529018	33529538	33554014	33554534	+	2996	520	52	L1HS	"COLO1T,COLO1N"	4685	520	"L1HS,(A)n,AluY,(CCAA)n"	LINE:dbRIP	"CLASP2,KIAA0627"		c3p33529278FS	TGTTTGGTAGTGGTACATCTATGG	c3p33529278ES	TCATTCTCAGTAAACTATCGCAAG
chr3	34190163	34190464	34215159	34215460	-	12	301	3	noL1	"COLO1T,COLO1N"	5	72	L1PBa				c3p34190313FS	ATAGGGTTTCTGCTGAGAAATATG	c3p34190313ES	ACCCAGAAGAGAAATAACAAACAC
chr3	34421702	34421949	34446698	34446945	+	45	247	7	L1PA4	"COLO1T,COLO1N"	162	276	MIRc				c3p34421825FS	AGACTGTGCATGTCATTATGATTC	c3p34421825ES	AACCATCATTCTCAGCAAACTATC
chr3	34429233	34429698	34454229	34454694	-	157	465	10	L1PA2	"COLO1T,COLO1N"	286	437	"L1PA2,MLT1D,MIR3"				c3p34429465FS	TCTTCTCTCCAGCTAATAATGACC	c3p34429465ES	TCATTCTCAGTAAACTATCGCAAG
chr3	34668860	34669258	34693856	34694254	-	203	398	11	L1HS	"COLO1T,COLO1N"	682	397	CT-rich	LINE:dbRIP			c3p34669059FS	TGAAAGGAGAGAAGAGGAAATTAG	c3p34669059ES	TGGGAGATATACCTAATGCTAGATG
chr3	34751464	34751769	34776460	34776765	+	19	305	2	noL1	"COLO1T,COLO1N"	70	304	L1PA10				c3p34751616FS	ATAGAATGGGTTAAGGAGAAGTCC	c3p34751616ES	CACAGTGCAATCAAATTAGAACTC
chr3	36629963	36630301	36654959	36655297	+	120	338	13	L1PA4	"COLO1T,COLO1N"	643	452	MIR3				c3p36630132FS	AGGTGTAAGTAGGTGTGGAATCAG	c3p36630132ES	AATGCTAAATGACAAGTTAATGGG
chr3	37864641	37865119	37889637	37890115	-	525	478	12	noL1	"COLO1T,COLO1N"	3435	346	L2c	"LINE:Ewing,Iskow"	BC040563		c3p37864880FS	TCTGGAACTTTTAAACCAGCTTAG	c3p37864880ES	ACCTGTAATCCCAGCTACTCAG
chr3	38601059	38601475	38626055	38626471	+	493	416	11	noL1	"COLO1T,COLO1N"	702	708	"AluSq2,(TGAG)n,A-rich"	"LINE:Beck,Ewing,Iskow,Stewart"	SCN5A		c3p38601267FS	TCATTAATCTGCTTATCAGTCACC	c3p38601267ES	ACTCTCTACCTCCCCAATAATCTC
chr3	40051693	40052149	40076689	40077145	+	58	456	7	L1PA4	"COLO1T,COLO1N"	343	458	L1PA4		"slac2-c,MYRIP"		c3p40051921FS	CATTCATTTCTTGGTTCCTATACC	c3p40051921ES	CATTCTCAGTAAACTATCGCACAG
chr3	40057438	40057996	40082434	40082992	+	546	558	20	L1HS	"COLO1T,COLO1N"	1994	557	"L1HS,L1MC4"	LINE:dbRIP	"slac2-c,MYRIP"		c3p40057717FS	AATACTGCAGATTCCTCAACTTTC	c3p40057717ES	ACACCGCATATTCTCACTCATAG
chr3	40165578	40165970	40190574	40190966	-	449	392	5	noL1	COLO1T	0	0	MSTB		"slac2-c,MYRIP"		c3p40165774FS	GAGAGCTCCAAGTTTGTGAGTTAG	c3p40165774ES	CATGTACTTCAGAACAGATGGAAG
chr3	40776560	40776676	40801556	40801672	+	15	116	3	L1PA3	"COLO1T,COLO1N"	132	428	L1MA2				c3p40776618FS	TACTGGGAGACTTTTATTTATGGC	c3p40776618ES	TCATTCTCAGTAAACTATCGCAAG
chr3	40834158	40834537	40859154	40859533	-	645	379	14	noL1	"COLO1T,COLO1N"	727	386	"L1ME3C,AluY"				c3p40834347FS	CAACTCAGTTTTTACAGGACATTG	c3p40834347ES	TACACTTACGCACTACTTCTCAGG
chr3	41394869	41395357	41419865	41420353	+	110	488	3	L1PA3	"COLO1T,COLO1N"	198	489	"L1PA3,L1PA5,(TAAAA)n,L1PA7"		ULK4		c3p41395113FS	GTTTTCTGTTCCTGTGTTAGTTTG	c3p41395113ES	CTCACTTATAGGTGGGAATTGAAC
chr3	41403778	41404153	41428774	41429149	-	12	375	2	L1PA4	"COLO1T,COLO1N"	21	373	"L1PA4,L1MA5A"		ULK4		c3p41403965FS	TATCTCAGGAATATCTCTTCAGGG	c3p41403965ES	AACTAGAAATACCATTTGACCCAG
chr3	41796442	41796968	41821438	41821964	+	6830	526	36	L1HS	"COLO1T,COLO1N"	17884	520	"LTR87,AluJb,L1HS,AT_rich"	LINE:dbRIP	ULK4		c3p41796705FS	AAGCTATGGCTATGGAGTTGTTAC	c3p41796705ES	TCATTCTCAGTAAACTATCGCAAG
chr3	41866553	41867329	41891549	41892325	-	13	776	4	L1PA4	"COLO1T,COLO1N"	15	228	L1PA4		ULK4		c3p41866941FS	CAAGTGTCCTCATTGTTCAATTC	c3p41866941ES	CCATAAAAACCCTAGAAGAAAACC
chr3	42251015	42251327	42276011	42276323	-	25	312	3	noL1	"COLO1T,COLO1N"	155	398					c3p42251171FS	CTTCCGTTATCCTCTTTCAAAAC	c3p42251171ES	TTGTTGAGAGTGAGAGTGAGAGAG
chr3	43056828	43057265	43081824	43082261	-	85	437	11	L1PA3	"COLO1T,COLO1N"	364	441	"L1PA3,L1M5"		"DKFZp434B172,AK311069,C3orf41"		c3p43057046FS	TCTGGAAGTTATTTTGGAGTAAGG	c3p43057046ES	TCATTCTCAGTAAACTATCGCAAG
chr3	44275470	44275685	44300466	44300681	-	884	215	4	noL1	"COLO1T,COLO1N"	2752	267	L1MEb	LINE:Ewing	BX648094		c3p44275577FS	TCGGTAGTTCATTCATTTTTACTG	c3p44275577ES	TTAAGCAAGGTAAAGAACAGTACG
chr3	46799064	46799617	46824060	46824613	-	24454	553	17	L1HS	"COLO1T,COLO1N"	119350	467	"L1MC2,L1HS"		"TESSP5,TSP50"		c3p46799340FS	ACAAAGGCAATTCAAGTAAGAAAG	c3p46799340ES	TGGGAGATATACCTAATGCTAGATG
chr3	47044024	47044141	47069020	47069137	+	5216	117	14	L1PA7	"COLO1T,COLO1N"	34434	279	"L1PA4,L1MB7"		"SETD2,KIAA1732"		c3p47044082FS	ATCCTGGCTAACACAGTGAAAC	c3p47044082ES	AGATCGAGATCATTCTGGCTAAC
chr3	50886492	50886981	50911477	50911963	-	14	489	3	noL1	"COLO1T,COLO1N"	14	486	"L1M2,L1MA2,AluJo,(T)n"		DOCK3		c3p50886736FS	CTCTAATGGAACAGCTTTGAGTTC	c3p50886736ES	AAAGGCAATCTGATTTACAATAGC
chr3	51314592	51314692	51339552	51339652	-	684	100	3	noL1	COLO1T	0	0	L1PA10		DOCK3		c3p51314642FS	ATTATTTACCCAGGAGTCACTCAG	c3p51314642ES	CCAATGACACTATGAAGCAACTAC
chr3	51660004	51660958	51684964	51685918	+	104	954	4	noL1	"COLO1T,COLO1N"	46	307	L1PA6		"KIAA0809,RAD54L2"		c3p51660481FS	CAACACTATGTTGAATAGGAGTGG	c3p51660481ES	GAGATCAGAGCAGAACTAAAGGAG
chr3	54234002	54234303	54258962	54259263	-	29	301	4	L1PA5	"COLO1T,COLO1N"	133	301	"L1MEg,L1PA5"		CACNA2D3		c3p54234152FS	GTTGACTAAAATGTTGCTATGCAG	c3p54234152ES	TAGGAAACTGCAAAACAGATACAG
chr3	54402746	54403445	54427706	54428405	-	24539	699	52	L1HS	"COLO1T,COLO1N"	134328	755	"L1HS,L1MA6"		CACNA2D3		c3p54403095FS	GTAGCTGCTCTACCTACCCCTC	c3p54403095ES	TAATGCTAGATGACACGTTAGTGG
chr3	54467684	54467897	54492644	54492857	-	14	213	6	L1PA3	"COLO1T,COLO1N"	30	219	"L1PA3,L1MA5"		CACNA2D3		c3p54467790FS	ATTTCACTTCAATGTGTAGCACTC	c3p54467790ES	ATGATGTGTTCATGTCCTTTGTAG
chr3	55763746	55763986	55788706	55788946	+	863	240	6	noL1	"COLO1T,COLO1N"	2755	409		"LINE:Ewing,Stewart"	"ERC2,KIAA0378"		c3p55763866FS	TTACTGTGGTTTCTTCTAGGCTTC	c3p55763866ES	TTCTTTAATCACCTAGCAGGATTC
chr3	56807564	56807676	56832524	56832636	-	12	112	6	noL1	"COLO1T,COLO1N"	25	114	(T)n		ARHGEF3		c3p56807620FS	GTAGACATAGAAAAGGAGCAGAGC	c3p56807620ES	TGGCAAATGTTTAATTTTAATATCC
chr3	57125323	57125976	57150283	57150936	-	186	653	6	noL1	"COLO1T,COLO1N"	558	653	"AT_rich,AluSp,MIR3"		IL17RD		c3p57125649FS	CATACACACACTAAAACACAACCC	c3p57125649ES	AATGACAACAACAACCATTATTTG
chr3	58748253	58748561	58773213	58773521	+	21	308	2	L1PA2	"COLO1T,COLO1N"	122	389	"L1PA2,L1PA7"		C3orf67		c3p58748407FS	TAGGTGTTTCTCCTAATGCTATCC	c3p58748407ES	TAACAGCTCTAGCACAGAGTAACG
chr3	59828009	59828193	59852969	59853153	+	3783	184	10	noL1	"COLO1T,COLO1N"	10107	192		"LINE:dbRIP,Ewing,Iskow,Stewart"	FHIT		c3p59828101FS	AGTGAAACTCTCAAAAGTCTAGGG	c3p59828101ES	TACAACACTTAAAGGTGGTCACAG
chr3	61301411	61301512	61326371	61326472	+	31	101	5	noL1	"COLO1T,COLO1N"	55	102	A-rich				c3p61301461FS	GTTAACACTTGATGCACGAAATAG	c3p61301461ES	ACTACAAACTCTATGAAAGCAGGG
chr3	63103099	63103344	63128059	63128304	+	52	245	6	L1PA2	"COLO1T,COLO1N"	214	454	LTR16C				c3p63103221FS	TGTTTTAAGTCACCTAGTGTGTGG	c3p63103221ES	TCATTCTCAGTAAACTATCGCAAG
chr3	63116498	63116887	63141458	63141847	+	15	389	3	L1PA2	"COLO1T,COLO1N"	53	101	"(TAAA)n,L1PA2"				c3p63116692FS	GGCTCTAAAGATCCCTTTTATCTC	c3p63116692ES	TCATTCTCAGTAAACTATCGCAAG
chr3	63172284	63172481	63197244	63197441	-	230	197	5	L1PA2	"COLO1T,COLO1N"	2023	443	L1PA2				c3p63172382FS	TTTTTAGTAGAGATGGGTTTCACC	c3p63172382ES	AAAATGAAGAGTTCATGTCCTTTG
chr3	63340116	63340686	63365076	63365646	-	655	570	20	L1PA5	"COLO1T,COLO1N"	981	362	"L1MDa,L1PA5"		SYNPR		c3p63340401FS	GCCTGTCTTTGTATGTGTTCATAG	c3p63340401ES	TAGACTGGATTAAGAAAATGTGGC
chr3	63552591	63552890	63577551	63577850	+	40	299	8	L1PA2	"COLO1T,COLO1N"	247	393	"L1PA2,MLT1C"		SYNPR		c3p63552740FS	ATATTCACCTGCCTTTATTTTCTG	c3p63552740ES	CAAATGTCCAACAATGATAGACTG
chr3	63612029	63612363	63636989	63637323	+	29	334	5	L1PA4	"COLO1T,COLO1N"	227	373	"AT_rich,L1PA4"				c3p63612196FS	TGGACAGAGTAAATATAGGAAGGC	c3p63612196ES	AACAATGAGAACACATGGACATAG
chr3	64853114	64853270	64878074	64878230	+	11	156	3	noL1	"COLO1T,COLO1N"	59	346			BC040632		c3p64853192FS	GAGTCCAGAGAGAACAAGGTAGAG	c3p64853192ES	AAAGTAATTCATTGAAAAGGCAAC
chr3	67579416	67579586	67496726	67496896	+	92	170	10	noL1	"COLO1T,COLO1N"	310	174	"(A)n,AluSx3,L1M4"		"SUCLG2,DKFZp586M2023"		c3p67579501FS	TTAATGACCAACATTCTTTGAGTG	c3p67579501ES	ACACAGACATAATCAGATGTGACC
chr3	67876000	67876286	67793310	67793596	-	42	286	3	L1PA4	"COLO1T,COLO1N"	191	162	L1MA5		"AL832184,BC038210"		c3p67876143FS	TATCTCAACGTCTTTTAGTTGTGC	c3p67876143ES	GGGATATAAAAAGGTATTCCACAC
chr3	68035877	68036157	67953187	67953467	-	12	280	3	L1PA3	"COLO1T,COLO1N"	45	280	MIRb		AL832184		c3p68036017FS	CTATGGGCTCTTTGTTTTCAGTAG	c3p68036017ES	AATGCTAGATGACAAGTTAGTGGG
chr3	69919551	69920029	69836861	69837339	-	100	478	10	L1PA4	"COLO1T,COLO1N"	578	465	"L1PA4,MIRb"		MITF		c3p69919790FS	GATTCTCTTTCTTTCCACTTTTTG	c3p69919790ES	GAGAAAATAGTGGTTATCACAAGG
chr3	70416510	70416910	70333820	70334220	-	20	400	3	L1PA3	"COLO1T,COLO1N"	31	413	"L1PA13,AT_rich,L1PA3"				c3p70416710FS	AAAAACAAAAGCAAAAACAAAAAG	c3p70416710ES	TCATTCTCAGTAAACTATCGCAAG
chr3	75087752	75088067	75005062	75005377	+	1343	315	15	L1HS	"COLO1T,COLO1N"	2593	483	"L1HS,L1MD"				c3p75087909FS	CAAAAGCTTTCTTAAAATACCCTG	c3p75087909ES	TAGACTGGATTAAGAAAATGTGGC
chr3	75184011	75184188	75101321	75101498	+	894	177	7	noL1	"COLO1T,COLO1N"	3134	206	MIR	"LINE:Ewing,Iskow,Stewart"			c3p75184099FS	TCTTCAAAACAGTTGCAAAAATAG	c3p75184099ES	TGTTAACTTCCTGGAAAAGGTTAG
chr3	77663684	77663822	77580994	77581132	-	2183	138	5	noL1	COLO1T	0	0			ROBO2		c3p77663753FS	TGTTTGAAAGCAGTCTATTCTGAG	c3p77663753ES	GAGCAAAGTTACTTGAAAGAAAGG
chr3	77894871	77895574	77812181	77812884	-	26184	703	31	L1HS	"COLO1T,COLO1N"	59503	1102	"MLT1E2,L1HS,L1M5"				c3p77895222FS	AATTTCATCTTTTGCTCATCTCTC	c3p77895222ES	TACCTAATGCTAGATGACACGTTG
chr3	78158238	78158588	78075548	78075898	+	60	350	3	noL1	"COLO1T,COLO1N"	65	68	"(TG)n,(A)n"				c3p78158413FS	CACACTGACAGCTCTATTTTGTTC	c3p78158413ES	TGAATCAGCATCTTCTAAGTTTTG
chr3	79266832	79267365	79184142	79184675	+	131879	533	47	L1HS	"COLO1T,COLO1N"	304143	533	"L1MA8,L1HS,L1MC4"		ROBO1		c3p79267098FS	TCCCAAGATAGTTTTTATTCAACC	c3p79267098ES	TCATTCTCAGTAAACTATCGCAAG
chr3	80309662	80310003	80226972	80227313	-	43	341	4	L1PA4	"COLO1T,COLO1N"	58	77	L1PA4				c3p80309832FS	ATCTTTTAAACAACCAGCTGTCTC	c3p80309832ES	ATGATCACCATTCTAACTTGTGTG
chr3	80672593	80672869	80589903	80590179	-	30	276	3	noL1	"COLO1T,COLO1N"	76	230	"L1ME3A,AT_rich"	"LINE:Ewing,Iskow"			c3p80672731FS	GCTTAAGACAGTAAAAGGTCAAGC	c3p80672731ES	TACCAAAAGAGGGAAGTAAGTGAG
chr3	81007822	81008064	80925132	80925374	-	251	242	6	L1HS	"COLO1T,COLO1N"	1516	242	L1HS	LINE:dbRIP			c3p81007943FS	TATTTTGTTTTGCTCACTCTTTTG	c3p81007943ES	CAAATGTCCAACAATGATAGACTG
chr3	81039281	81039804	80956591	80957114	+	11	523	2	L1PA5	"COLO1T,COLO1N"	22	65	"L1PA5,L1PA7"				c3p81039542FS	TCTTTTAATTTTGAGGTTAGGGTG	c3p81039542ES	AACTAGAAATACCATTTGACCCAG
chr3	81183022	81183279	81100332	81100589	-	396	257	16	L1PA2	"COLO1T,COLO1N"	1080	326	"L1MA9,L1PA2,(TTTTTA)n"				c3p81183150FS	AGCCTTTTAGTTTGGTATACTCCC	c3p81183150ES	TCATTCTCAGTAAACTATCGCAAG
chr3	81760638	81760922	81677948	81678232	-	765	284	8	L1HS	"COLO1T,COLO1N"	413	284	"L1HS,BLACKJACK"		GBE1		c3p81760780FS	GAAGAATGGCAAATGATAGAAATC	c3p81760780ES	AACCATCATTCTCAGGAAACTATC
chr3	81853030	81853557	81770340	81770867	+	1466	527	14	L1HS	"COLO1T,COLO1N"	3518	347	"L1HS,L2c"	LINE:dbRIP	GBE1		c3p81853293FS	AGAAAGAATTAGATGTTGTTTGGG	c3p81853293ES	TGGGAGATATACCTAATGCTAGATG
chr3	82073320	82073687	81990630	81990997	-	7868	367	25	noL1	"COLO1T,COLO1N"	10484	347	L1MA9	"LINE:Beck,Ewing,Iskow"			c3p82073503FS	TTCTAGTAGTTTTCCCATTTCAGG	c3p82073503ES	AAAGAAATAAAAAGCACCCAAATC
chr3	82227202	82227555	82144512	82144865	-	1005	353	7	noL1	"COLO1T,COLO1N"	1855	336		"LINE:Ewing,Stewart"	BC031255		c3p82227378FS	ATGGATGGCTTAATAGAGAATTTG	c3p82227378ES	CACCTGAAACATCTATGAAAAGTG
chr3	83019569	83019967	82936879	82937277	+	37	398	11	L1HS	"COLO1T,COLO1N"	135	400	"MLT1B-int,L1HS,(A)n"	LINE:dbRIP			c3p83019768FS	TTATTCTTCTTGTCCTCACTTTGC	c3p83019768ES	GAACAATGAGATCACATGGACAC
chr3	83046329	83046848	82963639	82964158	+	42	519	8	noL1	"COLO1T,COLO1N"	145	509	"Tigger1,L1PA3"				c3p83046588FS	TTTTAGTAGAGACGGGTTTCACC	c3p83046588ES	CAGTAATGAGATAAATCATGCTGC
chr3	83169208	83169710	83086518	83087020	-	109509	502	126	L1HS	"COLO1T,COLO1N"	250235	402	"L1HS,L2"				c3p83169459FS	TTTAAAGGATTGCCAAAATTATTC	c3p83169459ES	TCATTCTCAGTAAACTATCGCAAG
chr3	83935394	83935877	83852704	83853187	-	16407	483	17	L1HS	"COLO1T,COLO1N"	52882	483	L1HS	LINE:dbRIP			c3p83935635FS	CTTTAAAGCCTCTCAAAATCAATG	c3p83935635ES	TCATTCTCAGTAAACTATCGCAAG
chr3	84516262	84516421	84433572	84433731	+	211	159	6	noL1	"COLO1T,COLO1N"	211	157		"LINE:Iskow,Stewart"			c3p84516341FS	ACTACCCGATATACTGACCATGAG	c3p84516341ES	TATTGTTTCTAATGGGATACCCTG
chr3	84675629	84675954	84592939	84593264	-	59035	325	37	noL1	"COLO1T,COLO1N"	157151	354	L1PA16	LINE:Ewing			c3p84675791FS	GTTGATAGTTTCTTTTGCTGTGTG	c3p84675791ES	GATGATAGAATCTGTACCCCAAAC
chr3	84699545	84699894	84616855	84617204	+	10	349	4	noL1	"COLO1T,COLO1N"	4	66	"(TATG)n,(CA)n,MLT2A2"				c3p84699719FS	GACTAGACTGGCTAAGTCTTCTGG	c3p84699719ES	CTCCTTTCCAGCAATTAATAAGAG
chr3	85621524	85621640	85538834	85538950	+	25	116	4	L1PA2	"COLO1T,COLO1N"	163	130	(GA)n		CADM2		c3p85621582FS	CAGTTTCTTCTTGTGTGTAACAGG	c3p85621582ES	TTAACTTTGTTCCGATGTGATTAG
chr3	85659240	85659549	85576550	85576859	+	3077	309	13	noL1	"COLO1T,COLO1N"	15594	341	AluJr	"LINE:Ewing,Iskow,Stewart"	CADM2		c3p85659394FS	GACACAGAGTCAGACTGAGAAATC	c3p85659394ES	ATATTTAAAAATGAGCTGGGTGAG
chr3	85817419	85817521	85734729	85734831	+	19	102	2	noL1	"COLO1T,COLO1N"	13	105	AluSg		CADM2		c3p85817470FS	ACATGGATAGAACAAAATTTCAGC	c3p85817470ES	GATAGGGTAAGTGTGTCACAGATG
chr3	85950675	85951078	85867985	85868388	+	5973	403	20	noL1	"COLO1T,COLO1N"	6002	397	MLT2A2		CADM2		c3p85950876FS	AAAATTGCTCCTAGTTTGAAAATC	c3p85950876ES	AAAGGAAATCAGTATCTGAACAGC
chr3	86534765	86535055	86452075	86452365	-	4375	290	27	L1PA4	"COLO1T,COLO1N"	13395	499	"AluJo,L1PA4"				c3p86534910FS	AAGCAGGCTTAAATAATGTGAAAG	c3p86534910ES	GCAGGTCAGTCAATATATTTCTCC
chr3	88014661	88015050	87931971	87932360	+	15	389	5	L1PA3	"COLO1T,COLO1N"	136	738	"L1PA3,L1PA6"				c3p88014855FS	TTTATCTACCTTTGGTCTTTGAGG	c3p88014855ES	ATGATGAGTTCATGTCCTTTGTAG
chr3	88416922	88417241	88334232	88334551	-	59	319	9	L1PA2	"COLO1T,COLO1N"	225	390	L1PA2				c3p88417081FS	GCTAGAATGGAAACATAATAAGGG	c3p88417081ES	CCAACAATGATAGACTGCATTAAG
chr3	88879828	88880168	88797138	88797478	+	81	340	5	noL1	COLO1T	0	0	L1PA6				c3p88879998FS	GAATCTGACAATTATGTGTCTTGG	c3p88879998ES	GGACCTGACTGTTAGAAGGAAAAC
chr3	89401241	89401456	89318551	89318766	-	53	215	2	L1PA2	"COLO1T,COLO1N"	230	409	"AluJr,L1PA2,MER5A"		EPHA3		c3p89401348FS	TAATGTATATCATGTGCAAGACCC	c3p89401348ES	TCTAAAGATAACCCAACTCAGACC
chr3	89477367	89477516	89394677	89394826	-	39	149	11	L1PA2	"COLO1T,COLO1N"	132	152	"L1PA2,L1MC4"		EPHA3		c3p89477441FS	TAATAGAGAATGTATGTGGCCTTG	c3p89477441ES	CAAATGTCCAACAATGATAGACTG
chr3	89592251	89592724	89509561	89510034	-	82	473	8	L1HS	"COLO1T,COLO1N"	236	472	"L1HS,AT_rich"	LINE:dbRIP	EPHA3		c3p89592487FS	GTGTGTGCATATGTGTGTAAAATG	c3p89592487ES	TCATTCTCAGTAAACTATCGCAAG
chr3	90000608	90000931	89917918	89918241	-	15	323	8	L1PA8A	"COLO1T,COLO1N"	72	326	"L1PA2,AT_rich,MIRc"				c3p90000769FS	CCATCTGACAAAGGTCTAATATCC	c3p90000769ES	TCATTCTCAGTAAACTATCGCAAG
chr3	90300961	90301452	90218271	90218762	-	680	491	9	L1HS	"COLO1T,COLO1N"	5566	509	"(TATAA)n,L1HS,(T)n"				c3p90301206FS	AAAGACTTTACCAGAATGCTATGG	c3p90301206ES	TCATTCTCAGTAAACTATCGCAAG
chr3	90316519	90317247	90233829	90234557	-	212	728	5	noL1	"COLO1T,COLO1N"	459	728	"U6,MLT1D,MER5C,AT_rich,AluY,LTR16A2"				c3p90316883FS	TACTCAAAGTGATTTAGTGTTCGC	c3p90316883ES	AGGAGACAGAGCTTGCAGTGAG
chr3	90454730	90455062	90372040	90372372	+	40	332	2	noL1	"COLO1T,COLO1N"	137	65	ALR/Alpha				c3p90454896FS	AATCTGTAAGTGGATATCTGGAGC	c3p90454896ES	GTGTGAAGATATTTCCTTTTCCAC
chr3	90471886	90472339	90389196	90389649	+	17044	453	44	L1HS	"COLO1T,COLO1N"	54226	783	"L1HS,ALR/Alpha"				c3p90472112FS	CTGTAGAGGGATATTTCTGATTGG	c3p90472112ES	TCATTCTCAGTAAACTATCGCAAG
chr3	94992958	94993512	93510268	93510822	+	74	554	10	L1HS	"COLO1T,COLO1N"	298	559	"L1HS,ALR/Alpha"				c3p94993235FS	GTAGAATCTGCAAGTGGATATTTG	c3p94993235ES	TAATGCTAGATGACACGTTAGTGG
chr3	95105188	95105413	93622498	93622723	-	65	225	4	L1PA2	"COLO1T,COLO1N"	220	67	"AluJb,L1PA2"		PROS1		c3p95105300FS	ACTTCAACCCAAGAATTTGAGAC	c3p95105300ES	TTATTCACAATAGCAGAGACTTGG
chr3	98297751	98297854	96815061	96815164	+	31	103	6	noL1	"COLO1T,COLO1N"	28	79	"(CA)n,(TA)n"		EPHA6		c3p98297802FS	TTAGCTTTGAGTAAAAGACACCTG	c3p98297802ES	GTAAGTTCCTAAATGATGCTGATG
chr3	98821421	98821625	97338731	97338935	+	1209	204	14	noL1	COLO1T	0	0	L1PA12		"DKFZp434C1418,EPHA6"		c3p98821523FS	TCTGTAGGTTGTCCATTTACTCTG	c3p98821523ES	AGCAAACTCTCAGGATACAAAATC
chr3	99667276	99667485	98184586	98184795	-	125	209	12	L1PA2	"COLO1T,COLO1N"	375	168	L1PA2				c3p99667380FS	TGGTTATACCACCACTTTTAGATG	c3p99667380ES	TCATTCTCAGTAAACTATCGCAAG
chr3	100716023	100716160	99233333	99233470	+	10	137	2	L1PA4	"COLO1T,COLO1N"	10	205	L1PA4				c3p100716091FS	AGCTTGGTTTATTTTGATTATTGC	c3p100716091ES	TTGCACATACATAAGTAAGCCTTC
chr3	100934627	100934965	99451937	99452275	-	192	338	7	L1PA3	"COLO1T,COLO1N"	500	320	"L1PA3,THE1C-int"		COL8A1		c3p100934796FS	GTACAGGTATTGGGAAAATACACC	c3p100934796ES	TCAGGGATCTAGAACTGGAAATAC
chr3	101717201	101717376	100234511	100234686	+	14	175	4	L1PA3	"COLO1T,COLO1N"	94	219	L1MA4		TMEM45A		c3p101717288FS	GGAGCTCATTAGATAAAAGCAGAG	c3p101717288ES	TGGAAATCATCATTCTCAGTAAAC
chr3	101836484	101836592	100353794	100353902	-	26	108	2	noL1	COLO1T	0	0	(CA)n		GPR128		c3p101836538FS	CACAGCTAAAAAGTGATAGAGCTG	c3p101836538ES	CTGTGTGTTACAAAGGTCGTAGAG
chr3	102348125	102348268	100865435	100865578	+	529	143	6	L1PA4	"COLO1T,COLO1N"	4512	147	L1PA4				c3p102348196FS	ATAGAAAGAAACAGGAACCAACAC	c3p102348196ES	CAAATGTCCAACAATGATAGACTG
chr3	102998727	102998994	101516037	101516304	-	140	267	8	L1PA2	"COLO1T,COLO1N"	259	269	"L1PA2,MIR"		FAM55C		c3p102998860FS	ACCTTATGTAGGATTTTGAAGTGG	c3p102998860ES	TCATTCTCAGTAAACTATCGCAAG
chr3	103120595	103121349	101637905	101638659	-	148	754	6	L1PA7	"COLO1T,COLO1N"	517	754	L1PA7				c3p103120972FS	AAGACTCTTCAGAATGAATGAAGG	c3p103120972ES	GAAATGCAAATCAAAACTACAATG
chr3	103274572	103274700	101791882	101792010	+	36	128	5	L1PA3	"COLO1T,COLO1N"	609	137					c3p103274636FS	TTTGTATCTTTAGTAGAGACGGGG	c3p103274636ES	TGGGAGATATACCTAATGCTAGATG
chr3	103826055	103826171	102343365	102343481	+	12	116	3	L1PA3	"COLO1T,COLO1N"	75	116	"L1PA3,(A)n"				c3p103826113FS	GTTTCCAATCCAGTTCTTTCATAG	c3p103826113ES	ATGATGAGTTCATGTCCTTTGTAG
chr3	103848532	103848770	102365842	102366080	-	91	238	17	L1PA4	"COLO1T,COLO1N"	524	487	"L2c,AT_rich,(TC)n"				c3p103848651FS	CAAGAAATCCACATTATCTTTGTG	c3p103848651ES	AACCATCATTCTCAGCAAACTATC
chr3	104025665	104026385	102542975	102543695	+	164	720	5	noL1	"COLO1T,COLO1N"	566	720	L1PA4				c3p104026025FS	CTATTATTTCTGAGGGCTCTGTTC	c3p104026025ES	AAGAGCTATCTATGACAAACCCAC
chr3	104757476	104758125	103274786	103275435	-	174112	649	41	L1HS	"COLO1T,COLO1N"	815164	649	"(TG)n,L1HS,L1PB3,AT_rich"				c3p104757800FS	TTACATGGATTAATTGTAACGGTG	c3p104757800ES	GAGGGATAGCATTGGGAGATATAC
chr3	104911184	104911377	103428494	103428687	-	63	193	4	L1PA3	"COLO1T,COLO1N"	277	247	MLT1A0				c3p104911280FS	CAGAAGCAATTTAGTTTGAAACAG	c3p104911280ES	TCATTCTCAGTAAACTATCGCAAG
chr3	106503473	106503866	105020783	105021176	+	27	393	4	L1PA3	"COLO1T,COLO1N"	78	213	"L1PA3,L1MEg"				c3p106503669FS	CTTTAATTTCAGAATCTTGTTGGC	c3p106503669ES	AACTAGAAATACCATTTGACCCAG
chr3	106788435	106788944	105305745	105306254	-	1649	509	17	L1HS	"COLO1T,COLO1N"	2114	508	"L1HS,MER65D,AluSx"	LINE:dbRIP			c3p106788689FS	ATTTTTAATAGAAACAGGGTTTCAC	c3p106788689ES	TCATTCTCAGTAAACTATCGCAAG
chr3	106956323	106956625	105473633	105473935	-	82	302	6	L1HS	"COLO1T,COLO1N"	168	682	L1HS	LINE:dbRIP	CBLB		c3p106956474FS	AAGAAGAAAAGGGAAGAGAGAGAG	c3p106956474ES	CACATTTACACAGGAGAAAACAAG
chr3	107195019	107195184	105712329	105712494	-	24	165	3	L1PA3	"COLO1T,COLO1N"	320	231	"L1MA2,L1PA3"				c3p107195101FS	AATGTCTACGTATTGGAAAGTTGC	c3p107195101ES	TCATCATTCTCAGTAAACTATCGC
chr3	108296324	108296431	106813634	106813741	-	29	107	5	L1HS	"COLO1T,COLO1N"	15	99	"L1MC,L1HS"		BC036229		c3p108296377FS	TATAGCAAGATTGCAGATACAAGG	c3p108296377ES	CTGTACCACTTGTTGAAAAGACTG
chr3	109090610	109090949	107607920	107608259	+	93902	339	98	L1HS	"COLO1T,COLO1N"	237473	575	L1HS		LOC285205		c3p109090779FS	GCTTTGAAAAAGTTAAAAGTGCTC	c3p109090779ES	ATGATGAGTTCATGTCCTTTGTAG
chr3	109956902	109957456	108474212	108474766	+	5069	554	23	L1HS	"COLO1T,COLO1N"	24888	554	"(TAAA)n,L1HS"	LINE:Iskow	RETNLB	RETNLB.L	c3p109957179FS	CAAGTCTCTCACTTGCATGAGTC	c3p109957179ES	TAATGCTAGATGACACGTTAGTGG
chr3	110407374	110407882	108924684	108925192	+	644	508	11	L1HS	"COLO1T,COLO1N"	2730	332	"L1HS,AluSg"				c3p110407628FS	AATTTTAGACTTGAATTTTTCCCC	c3p110407628ES	TCATTCTCAGTAAACTATCGCAAG
chr3	110709618	110709783	109226928	109227093	-	16	165	3	L1PA3	"COLO1T,COLO1N"	3	65	"L1PA3,FLAM_C"				c3p110709700FS	CTCCTAAGTAACTGGGACTACAGG	c3p110709700ES	ATGATGAGTTCATGTCCTTTGTAG
chr3	111288822	111289159	109806132	109806469	+	38	337	9	L1PA2	"COLO1T,COLO1N"	109	81	"AluSx,L1PA2,(A)n"				c3p111288990FS	TTGAAAAGACAGTTTGGTATGATG	c3p111288990ES	TCATTCTCAGTAAACTATCGCAAG
chr3	111318571	111319155	109835881	109836465	-	12317	584	27	L1HS	"COLO1T,COLO1N"	40307	453	"L2a,L1HS,L1MC1,AT_rich"				c3p111318863FS	GATTCCTGGTTTGTATGGTAAGAC	c3p111318863ES	TGGGAGATATACCTAATGCTAGATG
chr3	112592322	112592616	111109632	111109926	+	852	294	19	L1PA3	"COLO1T,COLO1N"	3895	354	L1MA4A				c3p112592469FS	TCATGGTAAATGATACCTCAAATG	c3p112592469ES	TGGAAATCATCATTCTCAGTAAAC
chr3	113361443	113362089	111878753	111879399	-	1988	646	23	L1PA3	"COLO1T,COLO1N"	8257	646	"L1PA3,(TTTA)n,L1MA4"		SLC9A10		c3p113361766FS	TTTGGTAAAGATTTCGATTTAAGG	c3p113361766ES	CAAATGTCCAACAATGATAGACTG
chr3	114679489	114679658	113196799	113196968	+	10	169	3	L1PA3	"COLO1T,COLO1N"	31	371	L1MC4		CCDC52		c3p114679573FS	CTTGGCTTTTTACATTTAGCTTTC	c3p114679573ES	TAGACTGGATTAAGAAAATGTGGC
chr3	115475160	115475270	113992470	113992580	-	20	110	2	noL1	"COLO1T,COLO1N"	107	110	L1MA3				c3p115475215FS	AAAACAAAACGAAACAAAAATCAG	c3p115475215ES	AGAAAGATGCAAACAAACCTAGAC
chr3	116513723	116513843	115031033	115031153	-	94	120	5	L1PA3	"COLO1T,COLO1N"	676	120	"L1PA3,L1MB7"				c3p116513783FS	TGGAAACTTTATTGCCATTTTAAC	c3p116513783ES	TCATCATTCTCAGTAAACTATCGC
chr3	116632051	116632457	115149361	115149767	+	10	406	3	noL1	"COLO1T,COLO1N"	4	66	L1PA8				c3p116632254FS	TGTCATTTAATTCTTTCCTTTTCC	c3p116632254ES	TAAAATGTCAGGAAACAACAGATG
chr3	116671145	116671335	115188455	115188645	+	14	190	3	L1PA2	"COLO1T,COLO1N"	45	204	"L1PA2,MER68"				c3p116671240FS	ATGCTAACACCTGCTTTCTTTTAG	c3p116671240ES	CAAATGTCCAACAATGATAGACTG
chr3	116870560	116871576	115387870	115388886	-	7257	1016	38	L1HS	"COLO1T,COLO1N"	24511	498	"(CA)n,AluJb,L1HS,(T)n,L2a"		GAP43		c3p116871068FS	AAAAGTACACACACACACACACAC	c3p116871068ES	TAAAAAGATGAATAAGCACAGTGG
chr3	117567521	117568153	116084831	116085463	+	9688	632	30	L1HS	"COLO1T,COLO1N"	38741	638	"L1HS,L1P3"		LSAMP		c3p117567837FS	ATAGCATCATTCCTTAATCCTGAC	c3p117567837ES	TGGGAGATATACCTAATGCTAGATG
chr3	119499590	119499813	118016900	118017123	+	355	223	5	L1PA4	"COLO1T,COLO1N"	447	399	"L1PA4,ERV3-16A3_I-int"				c3p119499701FS	TTATTAGGAGAAAGGATGAAGTCC	c3p119499701ES	CTTTGTCCCTAACAGATGGAATAC
chr3	121064023	121064428	119581333	119581738	+	809	405	19	L1HS	"COLO1T,COLO1N"	2198	414	"L1HS,(T)n"		GSK3B		c3p121064225FS	AGGTTTGGATCTGAAACAAAATAG	c3p121064225ES	GATGAGTTCATATCCTTTGTAGGG
chr3	121616498	121616690	120133808	120134000	+	33	192	4	noL1	"COLO1T,COLO1N"	227	192	"SVA_F,AT_rich"		FSTL1		c3p121616594FS	CTCATTAATTTATCAGGGACAACC	c3p121616594ES	ACTAAGAAAACTTCTTCTGCCTTG
chr3	121780654	121780760	120297964	120298070	+	12	106	6	L1HS	"COLO1T,COLO1N"	13	88	L1HS				c3p121780707FS	AAAGACAGAGAGTTCTATGCCAAG	c3p121780707ES	GATGAGTTCATATCCTTTGTAGGG
chr3	121930252	121930353	120447562	120447663	+	29	101	7	L1PA3	"COLO1T,COLO1N"	226	101			RABL3		c3p121930302FS	TGTCTTCTCTCTTTTCACTGACTG	c3p121930302ES	TCCTTCCTACAAACCTGTAGACTC
chr3	122238003	122238372	120755313	120755682	-	792	369	8	L1HS	"COLO1T,COLO1N"	6057	398	"L1HS,L1PB4"		STXBP5L		c3p122238187FS	ACTAAAACTGCAAAGATTAGCTGG	c3p122238187ES	AGTTTGAGGCTTTAGTGAGCTATG
chr3	122290832	122291184	120808142	120808494	+	19	352	6	L1HS	"COLO1T,COLO1N"	799	453	L1MD2		STXBP5L		c3p122291008FS	ATAACAAGGACAGACATAAGAGCC	c3p122291008ES	CCTATGTAACTAACCTGCACAATG
chr3	122291922	122292358	120809232	120809668	-	17	436	4	L1PA3	"COLO1T,COLO1N"	57	692	"L1MD2,L1PA3"		STXBP5L		c3p122292140FS	TTTAGGTGGTTGTATTTGACATTG	c3p122292140ES	ACACCGCATATTCTCACTCATAG
chr3	122517180	122517433	121034490	121034743	+	17	253	5	L1PA4	"COLO1T,COLO1N"	43	243	"L1PA4,AluSz"		STXBP5L		c3p122517306FS	AACTACTTCCTTGTGCCAATTTAC	c3p122517306ES	ATAAAAATGGATGAGTTCATGTCC
chr3	122603384	122603899	121120694	121121209	+	412153	515	56	L1HS	"COLO1T,COLO1N"	680885	515	"MER45A,L2a,L1HS"		STXBP5L		c3p122603641FS	TGTGAAATTAAAGTTAGAAAGGGG	c3p122603641ES	TCATTCTCAGTAAACTATCGCAAG
chr3	125073371	125073701	123590681	123591011	+	2513	330	14	noL1	"COLO1T,COLO1N"	5350	364	"MER58A,L1M5"	"LINE:Ewing,Iskow"	MYLK		c3p125073536FS	TAGTGTTAGCATTGAATTGGATTG	c3p125073536ES	AACTACCGAAAATCACTCAAGAAG
chr3	126373415	126373570	124890725	124890880	+	190	155	7	L1HS	"COLO1T,COLO1N"	602	467	"AluSq2,L1HS,(A)n"		SLC12A8		c3p126373492FS	GTTCTTTCCTGAGAGCTGTTTTAG	c3p126373492ES	CAAATGTCCAACAATGATAGACTG
chr3	127525457	127526400	126042767	126043710	-	6237	943	33	L1HS	"COLO1T,COLO1N"	25926	285	"L1HS,L1PA8A,L1MC4"				c3p127525928FS	CAGTATTCCATGGTGTATATGTGC	c3p127525928ES	AAGTTAACATCACCAATGAAGGAC
chr3	130999514	131000090	129516824	129517400	-	18	576	2	noL1	"COLO1T,COLO1N"	49	65	"(A)n,AluSq2"		TMCC1		c3p130999802FS	AAACTTTAAGCAGAAAGAAGGTTG	c3p130999802ES	TTTCACTTACCACTTGTTTCACAC
chr3	131835562	131836033	130352872	130353343	+	1174	471	11	L1HS	"COLO1T,COLO1N"	4022	476	"(TAAA)n,L1HS"		"DKFZp667J1615,COL6A6"		c3p131835797FS	GAGGAAAGATTTATACAGGCACAC	c3p131835797ES	TCATTCTCAGTAAACTATCGCAAG
chr3	132012184	132012392	130529494	130529702	+	17	208	3	L1PA4	"COLO1T,COLO1N"	40	78	"AT_rich,L1PA4,LTR16A"				c3p132012288FS	CTTATTGTGGTTTTTAGGTGGTTC	c3p132012288ES	AACTAGAAATACCATTTGACCCAG
chr3	132536367	132537117	131053677	131054427	+	20	750	2	noL1	"COLO1T,COLO1N"	36	66	L1PA3		"BC043572,nek11L,NEK11"		c3p132536742FS	TTGAATACCCTTTATTTCCTTCTG	c3p132536742ES	GATCCCACAGAAATACAAATTACC
chr3	132612485	132612807	131129795	131130117	+	316	322	11	L1HS	"COLO1T,COLO1N"	1241	367	"L1PB1,L1HS,(A)n"				c3p132612646FS	GTGAGCTAGTGTGATCTTTTGATG	c3p132612646ES	TTGATGAGTTCATGTCCTTTGTAG
chr3	132771145	132771913	131288455	131289223	-	1199	768	12	L1HS	"COLO1T,COLO1N"	4112	769	"(GAAA)n,L1HS,(TTTA)n,AluJr4,L1M5"		CPNE4		c3p132771529FS	GAGCTCAGGAGTTTAAGGTTACAG	c3p132771529ES	TAATGCTAGATGACACGTTAGTGG
chr3	133572749	133573049	132090059	132090359	-	244	300	4	L1PA2	"COLO1T,COLO1N"	200	300	"L1PA2,L1M6"				c3p133572899FS	TTTCACATCTTTCCCTTCTTTTAC	c3p133572899ES	CTGTAAGCTAGTTCAACCATTGTG
chr3	133961887	133962608	132479197	132479918	-	32	721	8	L1PA2	"COLO1T,COLO1N"	122	819	"L2a,L1PA2"		NCRNA00119		c3p133962247FS	GAATGTATATCTCCAATCTGGACC	c3p133962247ES	AACTAGAAATACCATTTGACCCAG
chr3	133997083	133997199	132514393	132514509	-	54	116	3	L1PA4	"COLO1T,COLO1N"	163	195			NCRNA00119		c3p133997141FS	CTTCACCTTATGAGTCTCCTGTC	c3p133997141ES	AACACCACATGTTCTCACTCATAG
chr3	134008061	134008672	132525371	132525982	-	236937	611	95	L1HS	"COLO1T,COLO1N"	810630	681	"L1HS,L2,LTR81,MLT1H"	LINE:Iskow	NCRNA00119		c3p134008366FS	TCCTAGTCTGAAAGGCTATATGTG	c3p134008366ES	TGGGAGATATACCTAATGCTAGATG
chr3	134147097	134147593	132664407	132664903	-	24808	496	51	L1HS	"COLO1T,COLO1N"	90397	490	L1HS				c3p134147345FS	TGATACAGTATTGAAATGCAAACC	c3p134147345ES	TCATTCTCAGTAAACTATCGCAAG
chr3	136156221	136156677	134673531	134673987	-	759	456	28	L1HS	"COLO1T,COLO1N"	1882	522	"L1HS,(T)n"	LINE:dbRIP	"EphB1,EPHB1"		c3p136156449FS	AGAATGGTGGATAACAGAGAATTG	c3p136156449ES	TCATTCTCAGTAAACTATCGCAAG
chr3	136313556	136313966	134830866	134831276	-	42	410	7	L1PA4	"COLO1T,COLO1N"	407	318	L1PA4		"EphB1,EPHB1"		c3p136313761FS	TTTTTAGTAGAGATGGGGTTTCAC	c3p136313761ES	TCATTCTCAGCAAACTATCACAAG
chr3	137680210	137680658	136197520	136197968	-	24	448	6	L1HS	"COLO1T,COLO1N"	167	448	"L1HS,MIR"		"STAG1,STAG1 variant protein"		c3p137680434FS	TCCAATTTACAAAAGGCAATAATC	c3p137680434ES	TCATTCTCAGTAAACTATCGCAAG
chr3	138164754	138165282	136682064	136682592	-	31190	528	53	L1HS	"COLO1T,COLO1N"	69100	528	"L1HS,L1MA4A"		"IL20RB,UNQ557"		c3p138165018FS	TAATCTGTTCATCATATCACTGGG	c3p138165018ES	TCATTCTCAGTAAACTATCGCAAG
chr3	138294923	138295475	136812233	136812785	-	38463	552	78	L1HS	"COLO1T,COLO1N"	90469	737	"T-rich,L1HS,L1ME3C,L1M5"				c3p138295199FS	AACCAGAGTCTTTGGCTTAATATG	c3p138295199ES	TAATGCTAGATGACACGTTAGTGG
chr3	138556077	138556378	137073387	137073688	+	2569	301	17	L1HS	"COLO1T,COLO1N"	5091	536	"L1MB8,L1HS"	LINE:dbRIP			c3p138556227FS	AAATGATAAATGCTTGAAGTGATG	c3p138556227ES	GATGAGTTCATATCCTTTGTAGGG
chr3	138592921	138593492	137110231	137110802	-	20	571	3	noL1	"COLO1T,COLO1N"	4	571	L1PA7				c3p138593206FS	AGAATGATGATTTCCAGTTTCATC	c3p138593206ES	AAAAACCCTAGAAGAAAAGTAGGC
chr3	138598134	138598449	137115444	137115759	+	10	315	2	noL1	"COLO1T,COLO1N"	1	65	L1PA6				c3p138598291FS	GAAAGTCATTTTTATCTTGATGGG	c3p138598291ES	ATAAAATACTGGCAAACTGAATCC
chr3	139106420	139106956	137623730	137624266	+	227144	536	72	L1HS	"COLO1T,COLO1N"	1214387	537	"L1HS,L1PREC2"				c3p139106688FS	GGAAGATTCAGAACTAAACTGGTG	c3p139106688ES	TAATGCTAGATGACACGTTAGTGG
chr3	139287818	139288137	137805128	137805447	+	65	319	5	L1PA3	"COLO1T,COLO1N"	376	744			DZIP1L		c3p139287977FS	CTACTGTCCCCATCAGTACACAG	c3p139287977ES	TGGAAATCATCATTCTCAGTAAAC
chr3	140229596	140230260	138746906	138747570	-	13	664	3	noL1	"COLO1T,COLO1N"	25	664	L1PA5				c3p140229928FS	GTATTATTTCTGAGGCCTCTGTTC	c3p140229928ES	AAGAGCTATTTATGACAAACCCAC
chr3	140527095	140527833	139044405	139045143	+	3450	738	11	noL1	"COLO1T,COLO1N"	3391	366	"THE1B,MLT1B,MIRb"	"LINE:Ewing,Iskow,Stewart"			c3p140527464FS	TAATTTTCTTCTAGTTCCACAGGC	c3p140527464ES	AGACTTATTCTCCACCACAAGAAC
chr3	142958390	142958724	141475700	141476034	-	20	334	3	L1PA2	"COLO1T,COLO1N"	65	68	L1PA2				c3p142958557FS	AAACTCATTAACTGCACATGTAGG	c3p142958557ES	TCATTCTCAGTAAACTATCGCAAG
chr3	144367712	144367932	142885022	142885242	+	14	220	4	L1PA2	"COLO1T,COLO1N"	141	287	L2b				c3p144367822FS	TAGTGCAGTAGGTTTGTTTACACC	c3p144367822ES	ATCTGTTGAATGGAAGAATCTGAC
chr3	144603983	144604481	143121293	143121791	-	10014	498	25	noL1	"COLO1T,COLO1N"	23733	411	"L1M4b,L1MEf"	LINE:Ewing	SLC9A9		c3p144604232FS	CTACCTCAACGAATAAAAAGGAAG	c3p144604232ES	CAGTAAGTAAGAGTGGAGCAAATG
chr3	146092292	146092764	144609602	144610074	-	73002	472	34	noL1	"COLO1T,COLO1N"	248671	390	(TG)n	"LINE:Ewing,Stewart"			c3p146092528FS	GGGTTCCATAACAAGAGATCTTAC	c3p146092528ES	CTCAAAATACTTACAACTGGAGGC
chr3	147932859	147933195	146450169	146450505	-	616	336	13	L1PA2	"COLO1T,COLO1N"	798	339					c3p147933027FS	TGATTTTTATCTAAGGGAAACCTG	c3p147933027ES	TCATTCTCAGTAAACTATCGCAAG
chr3	148680758	148681083	147198068	147198393	-	27	325	11	L1HS	"COLO1T,COLO1N"	54	234	L1HS				c3p148680920FS	TTACAGGAGGAGAAGAAAGAAAAG	c3p148680920ES	AGACAGAATGGTAAGGCATAGAAC
chr3	148928114	148928331	147445424	147445641	+	15	217	3	L1PA3	"COLO1T,COLO1N"	21	217	L1PA5				c3p148928222FS	TATTGCATAGGTTTTCTTCTAGGG	c3p148928222ES	TGGAAATCATCATTCTCAGTAAAC
chr3	151693149	151693711	150210459	150211021	-	90	562	11	L1HS	"COLO1T,COLO1N"	236	481	"L2a,L1HS,AluSz,Charlie7a"	LINE:Ewing			c3p151693430FS	CAACTGTAATCCCAGTTTCTCAG	c3p151693430ES	TCATTCTCAGTAAACTATCGCAAG
chr3	152814452	152815093	151331762	151332403	+	54	641	3	noL1	"COLO1T,COLO1N"	123	713	L1PA4				c3p152814772FS	TGTCATTTAGCATTAGGTATGTCG	c3p152814772ES	GAAAATTTTTGCAACCTACTCATC
chr3	153794031	153794489	152311341	152311799	-	489	458	14	L1HS	"COLO1T,COLO1N"	1272	179	"MLT1N2,L1HS"	LINE:dbRIP			c3p153794260FS	TGAAAGTAAGGAGAATGGAGAGAG	c3p153794260ES	CCATCATTCTCAGTAAACTATTGC
chr3	154183893	154184366	152701203	152701676	+	386	473	10	noL1	"COLO1T,COLO1N"	1740	1118	L1PA5	"LINE:Beck,Ewing,Iskow"			c3p154184129FS	ACTGATTTGTGTATGTTGAACCAG	c3p154184129ES	GGACACATTTAAAGCAGTGTGTAG
chr3	154855339	154855607	153372649	153372917	-	10	268	2	noL1	"COLO1T,COLO1N"	17	278	L1PA4				c3p154855473FS	CTATAAACCCAGTAATGGACTTGC	c3p154855473ES	AGCCTGTTATTGGTCTATTCAGAG
chr3	155269747	155270278	153787057	153787588	+	16	531	4	L1PA4	"COLO1T,COLO1N"	60	531	L1PA4		BC038431		c3p155270012FS	AAGTTTTATTTTGGACATCAAAGC	c3p155270012ES	CGTATGTTTATTGTGGCACTATTC
chr3	156115241	156115723	154632547	154633029	+	92387	482	72	L1HS	"COLO1T,COLO1N"	185335	683	"L1HS,L1MA3"	LINE:dbRIP			c3p156115482FS	ATAACGACCACTCTCTTAAACCAC	c3p156115482ES	GAAATTGGAAACCATCATTCTTAG
chr3	156409945	156410081	154927251	154927387	-	1374	136	6	L1PA2	"COLO1T,COLO1N"	7092	136	"L1PA2,FLAM_C"				c3p156410013FS	TTTCTTCAGGTATCTGATTGTCTG	c3p156410013ES	TACTATGCAGCCATAAAAATGATG
chr3	156706431	156706887	155223737	155224193	-	11904	456	20	L1PA2	"COLO1T,COLO1N"	44839	456	"L1PA2,MIRb,MER94,MIR3"		PLCH1		c3p156706659FS	CATACATGTTTATTGCTTTTGGAG	c3p156706659ES	TCATTCTCAGTAAACTATCGCAAG
chr3	157542512	157543131	156059818	156060437	-	6485	619	32	L1HS	"COLO1T,COLO1N"	9985	980	"L1HS,MER5B"		KCNAB1		c3p157542821FS	TTTCTATTCTATTCCATTTCACCC	c3p157542821ES	ATTCATTAGAAACACATAGGGAGC
chr3	157852789	157852984	156370095	156370290	-	37	195	3	L1PA3	"COLO1T,COLO1N"	15	196	L1PA3				c3p157852886FS	TACTTGTTTCATCTTGTCTATGGC	c3p157852886ES	CAGATAGGCTGGATTAAGAAAATG
chr3	159226141	159226502	157743447	157743808	+	4492	361	24	L1HS	"COLO1T,COLO1N"	33879	356	"L1HS,AT_rich"				c3p159226321FS	ATCTATGAAGGGTGTTGATAATCC	c3p159226321ES	TCATTCTCAGTAAACTATCGCAAG
chr3	159731329	159731430	158248635	158248736	+	11	101	3	L1HS	"COLO1T,COLO1N"	29	103	"L1HS,(A)n"		RSRC1		c3p159731379FS	TCTTAATCCTCCCTGTCATTTAAG	c3p159731379ES	GAAATAGTTTCCTTTCCTCCTTTC
chr3	160295436	160295871	158812742	158813177	-	973	435	16	L1HS	"COLO1T,COLO1N"	3533	977	"MamRep38,L1HS,AT_rich"		"IQCJ,SCHIP1"		c3p160295653FS	CTTTATTATCCATGTTGGTTGATG	c3p160295653ES	TCATTCTCAGTAAACTATCGCAAG
chr3	163108524	163109198	161625830	161626504	+	6283	674	32	L1HS	"COLO1T,COLO1N"	25648	665	"AluJb,L1HS,MER82,(A)n"				c3p163108861FS	ATTATTTTTAACACTGCTATGCCC	c3p163108861ES	TGGGAGATATACCTAATGCTAGATG
chr3	163579306	163579522	162096612	162096828	-	18	216	3	L1PA2	"COLO1T,COLO1N"	21	290	MER34				c3p163579414FS	TGAGTTTAAAAATATTATGCGGAAC	c3p163579414ES	TCATTCTCAGTAAACTATCGCAAG
chr3	164443400	164443710	162960706	162961016	+	25	310	5	L1HS	"COLO1T,COLO1N"	1991	399	L1HS		LOC647107		c3p164443555FS	TTCATAAGTAATAGCATGCTCAGG	c3p164443555ES	TCATTCTCAGTAAACTATCGCAAG
chr3	164960352	164961010	163477658	163478316	-	16	658	6	L1PA3	"COLO1T,COLO1N"	106	457	"L1PA3,L1MA7"				c3p164960681FS	CCTGTGTTAACCACCTCTCTATTC	c3p164960681ES	GGAAATCATCATTCTCAGTAAACC
chr3	165057178	165057280	163574484	163574586	+	237	102	9	L1PA3	"COLO1T,COLO1N"	530	376	"L1PA3,(A)n,HERVL74-int"				c3p165057229FS	TTCTAAATTTAAACAACACACCCC	c3p165057229ES	TACTATGCAGCCATAAAAATGATG
chr3	165335433	165335541	163852739	163852847	+	16	108	6	noL1	"COLO1T,COLO1N"	21	101	L1PA4				c3p165335487FS	ATTGCATCTATAAATTACCTTGGG	c3p165335487ES	ATCCTCAATAAAATACTGGCAAAC
chr3	166561240	166561360	165078546	165078666	-	10	120	3	L1PA4	"COLO1T,COLO1N"	24	121	L1MA8				c3p166561300FS	AGAAGAGCACATGGAAATAGTCTC	c3p166561300ES	TCATTCTCAGTAAACTATCGCAAG
chr3	166763604	166764370	165280910	165281676	+	14	766	5	noL1	"COLO1T,COLO1N"	52	775	"L1MEg,(T)n,AluSz,AT_rich"				c3p166763987FS	TTTATTCTTTGATGTGGAGTTTTG	c3p166763987ES	CTAGGCTGATCTTGAAATCCTG
chr3	166778813	166779175	165296119	165296481	+	2042	362	24	L1PA3	"COLO1T,COLO1N"	6493	472	"L1ME3A,L1PA3"				c3p166778994FS	TCTCAAAAGTCTGTCTACCATGTG	c3p166778994ES	TGGAAATCATCATTCTCAGTAAAC
chr3	166958859	166959155	165476165	165476461	+	301	296	8	noL1	"COLO1T,COLO1N"	183	76	(TAAAA)n				c3p166959007FS	TCCGTCCCTATCATTATTACTACC	c3p166959007ES	CCTTTGAGATTCTGATGTAAGACC
chr3	168247326	168247623	166764632	166764929	+	83	297	2	L1PA3	"COLO1T,COLO1N"	345	333					c3p168247474FS	TTCTTTGATTCTAAATTACCCCTG	c3p168247474ES	TCATTCTCAGTAAACTATCGCAAG
chr3	168404422	168404755	166921728	166922061	-	161	333	14	L1HS	"COLO1T,COLO1N"	623	459	"L1HS,(T)n"	LINE:Ewing			c3p168404588FS	AACAGTGAGCCAAAGAAATTCTAC	c3p168404588ES	GATGAGTTCATATCCTTTGTAGGG
chr3	169496839	169497193	168014145	168014499	-	27	354	3	L1PA3	"COLO1T,COLO1N"	90	718	L1MA8				c3p169497016FS	TGGGCTAATCGAGGTATATGTTAC	c3p169497016ES	TCATTCTCAGTAAACTATCGCAAG
chr3	169555553	169556311	168072859	168073617	+	908	758	10	L1HS	"COLO1T,COLO1N"	3498	758	"MER102c,L1HS,MIR3"				c3p169555932FS	GAGTAGACAAATGTTTTTCAAGGG	c3p169555932ES	TAATGCTAGATGACACGTTAGTGG
chr3	170752623	170753201	169269929	169270507	+	42	578	4	noL1	"COLO1T,COLO1N"	133	578	"MIR,L1MB7,MIR3"	"LINE:Ewing,Iskow,Alu:Stewart"	"MDS1,EVI1"		c3p170752912FS	AAATACTGGTCTTACAGAGCTTGC	c3p170752912ES	AAAGAGACCCAAAATGCTACATAC
chr3	174646067	174646545	173163373	173163851	-	89	478	13	L1PA4	"COLO1T,COLO1N"	299	507	"Tigger15a,L2"		NLGN1		c3p174646306FS	AAAATGACCTGTTCCTTAGGTATG	c3p174646306ES	TAATGCTAAATGACAAGTTGATGG
chr3	175764389	175764629	174281695	174281935	-	162	240	4	noL1	COLO1T	0	0	LTR42		"AJ607401,AJ607400,AJ607399"		c3p175764509FS	TGATTAATTTATTTTCTGATCCCTAAG	c3p175764509ES	ACACATTCTTTTCAAGCACTGTAG
chr3	177160364	177160715	175677670	175678021	-	97969	351	51	noL1	"COLO1T,COLO1N"	210916	335	L1MC4a	"LINE:Ewing,Iskow"			c3p177160539FS	TGAGAAATTTACCTCTTGTTACCC	c3p177160539ES	TAAAGGGACAGCAAAGTATAATCC
chr3	177573998	177574454	176091304	176091760	+	62308	456	66	noL1	"COLO1T,COLO1N"	166028	435	L1MA5A	"LINE:dbRIP,Ewing,Iskow"			c3p177574226FS	TTGTCATTTATTTGTGTTGGAAAC	c3p177574226ES	AGCAGACATTTCTCAAAAGAAGAC
chr3	179213857	179214180	177731163	177731486	-	500	323	11	L1PA3	"COLO1T,COLO1N"	1539	362	"L1PA3,Zaphod"				c3p179214018FS	TGAAGTCAAAATGATTAACACCTG	c3p179214018ES	ATGATGAGTTCATGTCCTTTGTAG
chr3	180773455	180774058	179290761	179291364	-	22	603	5	noL1	"COLO1T,COLO1N"	42	603	"AT_rich,(T)n"		ACTL6A	ACTL6A.3	c3p180773756FS	AGTTTTAATGGAATGTTTAGGTGG	c3p180773756ES	GAAGCAGTCCTAGGAAATAAAATG
chr3	181244043	181244363	179761349	179761669	+	14	320	4	noL1	"COLO1T,COLO1N"	63	320	"L1PA3,(A)n"				c3p181244203FS	ATCACTTTAGGAATTAGGCACTTG	c3p181244203ES	GTGGGACTACAAACTAGTTCAACC
chr3	181398714	181399088	179916020	179916394	-	540	374	7	noL1	COLO1T	0	0	MLT2B1				c3p181398901FS	CTTTAAAGCCTCTATCTCCAACTG	c3p181398901ES	GGGTACATGGGCTTTATAATACTG
chr3	181582133	181582373	180099439	180099679	+	91	240	5	L1PA3	"COLO1T,COLO1N"	412	371					c3p181582253FS	AAAAACATTATTGGAACACAATCC	c3p181582253ES	CATAGGTGAGAATTGAACAATGAG
chr3	181763445	181763717	180280751	180281023	+	11	272	4	noL1	"COLO1T,COLO1N"	14	292	"L1P2,L1PA6"				c3p181763581FS	CTCTCCTGTAATTAGATGTGGGTC	c3p181763581ES	CACAGTGCAATCAAATTAGAAGTC
chr3	184434752	184435231	182952058	182952537	-	26242	479	39	L1HS	"COLO1T,COLO1N"	56215	391	L1HS		MCF2L2		c3p184434991FS	AATACCAATATGTTTCTACGAGCC	c3p184434991ES	TCATTCTCAGTAAACTATCGCAAG
chr3	187854847	187855350	186372153	186372656	+	38	503	6	noL1	"COLO1T,COLO1N"	369	474	"AT_rich,LTR33A_"	"LINE:dbRIP,Ewing,Iskow,Stewart"			c3p187855098FS	TTTTTAAACATTCAGCTGAGGTAAC	c3p187855098ES	TTTGAACTCAATGGTAAACTAGCC
chr3	188624566	188624855	187141872	187142161	-	261	289	11	L1PA17	"COLO1T,COLO1N"	496	289	L1M5				c3p188624710FS	ATAGGTTCACTAGAAGCCCAAAC	c3p188624710ES	TCATCATTCTCAGTAAACTATCGG
chr3	189068969	189069414	187586275	187586720	+	4936	445	21	L1PA2	"COLO1T,COLO1N"	15360	481	"HAL1,L1PA2"				c3p189069191FS	AATGCTTTACACATACATCTTTGG	c3p189069191ES	TCATTCTCAGTAAACTATCGCAAG
chr3	189317536	189317978	187834842	187835284	-	22311	442	27	noL1	"COLO1T,COLO1N"	51072	802	AluSc8	"LINE:dbRIP,Ewing,Iskow,Stewart"			c3p189317757FS	TTTTATTTGACACAGAGTCCCAC	c3p189317757ES	CGTAATCCCATCTATTCCAGAG
chr3	189745702	189746107	188263008	188263413	+	215	405	9	L1HS	"COLO1T,COLO1N"	326	405	"MLT1G1,L1HS"		LPP		c3p189745904FS	ACTTGTCTGGAGCCTTACTACAAC	c3p189745904ES	TCATTCTCAGTAAACTATCGCAAG
chr3	189793644	189793896	188310950	188311202	-	66	252	7	noL1	"COLO1T,COLO1N"	184	252	"(TG)n,(TC)n"		LPP		c3p189793770FS	GCCTAGCTCTCTCAAAAGTCTAAG	c3p189793770ES	AATGACCTGGATGAGATTAGAGAC
chr3	191184593	191184886	189701899	189702192	+	31	293	5	L1PA4	"COLO1T,COLO1N"	150	293	MIR3		LEPREL1		c3p191184739FS	TCTTTACACAATATGCAAAATTCC	c3p191184739ES	TTTTAAATAATGAGCTTTCTTGGG
chr3	194836431	194836807	193353737	193354113	-	5751	376	19	noL1	"COLO1T,COLO1N"	26276	460		"LINE:Ewing,Stewart"	OPA1		c3p194836619FS	CGTGTGAATCAGTTTATTTTTCTG	c3p194836619ES	CTGTAGAATCAGAAATGAATGTGG
chr3	195859151	195859544	194377862	194378255	+	24	393	5	L1PA4	"COLO1T,COLO1N"	40	442	"L1PA4,L3"		LSG1		c3p195859347FS	GCTTTCATATTCCTCATAGACACC	c3p195859347ES	ACACCGCATATTCTCACTCATAG
chr3	196116470	196116571	194635181	194635282	+	11	101	5	L1PA7	"COLO1T,COLO1N"	53	110	"(A)n,L1PA7"				c3p196116520FS	GCACATTTTATGAGAAACGATATG	c3p196116520ES	ACACACGCTCACGTATATTTATTG
chr3	199338373	199338614	197853976	197854217	-	11	241	4	noL1	"COLO1T,COLO1N"	30	109	L1MB3				c3p199338493FS	GGAGGTGTTAGTCCTCTAACTTTG	c3p199338493ES	TAAATGTTCCAACACATGAAAATC
chr4	2521552	2522251	2551754	2552453	-	17	699	2	noL1	"COLO1T,COLO1N"	58	66	"AluSz6,AluSp,L1MD"				c4p2521901FS	TTTTAGTAAAGATGGGATTTCACC	c4p2521901ES	CTGGGAGACAGAGCAAGACTC
chr4	5718668	5718905	5667767	5668004	-	93677	237	16	noL1	"COLO1T,COLO1N"	110879	357	HAL1b	"LINE:Ewing,Iskow"	EVC2		c4p5718786FS	CTCACAGATGATTGAGTGTCAGAG	c4p5718786ES	ACTTCAGGAAAAACAAAAAGTCAC
chr4	8046385	8046770	7995485	7995870	-	11032	385	24	L1HS	"COLO1T,COLO1N"	33252	697	"L1HS,MER102a"	LINE:dbRIP	"KIAA1808,ABLIM2"		c4p8046577FS	CACCCCTACAAAAAGCAATTAG	c4p8046577ES	TCATTCTCAGTAAACTATCGCAAG
chr4	9046033	9046352	9436935	9437254	-	24	319	2	noL1	"COLO1T,COLO1N"	78	66	L1PA5				c4p9046192FS	ATATCCTCAAATATGTTTCCCAAG	c4p9046192ES	AAGATAGGAATGAAGATCATCGAG
chr4	11957732	11957906	12348634	12348808	+	38	174	8	L1PA2	"COLO1T,COLO1N"	46	174	"L1PA2,MSTA"				c4p11957819FS	AAAGACAGAGACCTAGCACATTTC	c4p11957819ES	CAAATGTCCAACAATGATAGACTG
chr4	12119382	12119833	12510284	12510735	-	13	451	2	L1PA2	"COLO1T,COLO1N"	35	65	"L1PA2,L1M4"				c4p12119607FS	TTTTTGTGTATGGATATGGAGATG	c4p12119607ES	AACTAGAAATACCATTTGACCCAG
chr4	14294793	14295052	14685695	14685954	-	22	259	5	L1HS	"COLO1T,COLO1N"	231	445	"GA-rich,L1HS,(TTTA)n"		MGC4836		c4p14294922FS	TTTTTCCTTCTGTGTCTACTCAAC	c4p14294922ES	GAGACTCTGTCACAAAAATGAATG
chr4	14371845	14372488	14762747	14763390	+	4340	643	24	L1HS	"COLO1T,COLO1N"	6947	587	"L2a,L1HS,L2b,MIRb,AT_rich"		MGC4836		c4p14372166FS	AGAGTGTCCACTAAGTGAGTGATG	c4p14372166ES	TGGGAGATATACCTAATGCTAGATG
chr4	14458167	14458632	14849069	14849534	+	1463	465	13	noL1	"COLO1T,COLO1N"	8320	674	MER5A1	"LINE:Ewing,Iskow"	MGC4836		c4p14458399FS	CATTCTCTTTGTAGTGATAACCCC	c4p14458399ES	TGTGGTGTATGAATTGTGAGAAAC
chr4	14470799	14470921	14861701	14861823	+	11	122	5	L1PA5	"COLO1T,COLO1N"	51	467	"L1PA10,L1PA5"		MGC4836		c4p14470860FS	CCTTCCAATAGATTATACCTGAGC	c4p14470860ES	ACACTAGATTGCTTGTAAGTTCCC
chr4	15458231	15458698	15849133	15849600	+	230	467	12	L1HS	"COLO1T,COLO1N"	1293	741	"L1HS,(A)n"	LINE:dbRIP	CD38		c4p15458464FS	AACTTGCTTTGAAACAAACCTTAG	c4p15458464ES	TCATTCTCAGTAAACTATCGCAAG
chr4	15480685	15481269	15871587	15872171	-	6424	584	14	noL1	"COLO1T,COLO1N"	9064	305	LTR9	"LINE:Ewing,Iskow,Stewart"			c4p15480977FS	CCCCTCAGTTTTTATTTTTATCAG	c4p15480977ES	AGAAGGCTATCATGTTCTATCGAC
chr4	15908473	15908601	16299375	16299503	-	14	128	2	L1PA3	"COLO1T,COLO1N"	49	128	L1MCa				c4p15908537FS	ATCAGAAGATGGTAAGATGCTCTC	c4p15908537ES	TCATTCTCAGTAAACTATCGCAAG
chr4	16559783	16560326	16950685	16951228	+	224932	543	46	L1HS	"COLO1T,COLO1N"	481803	397	"L1HS,MLT1C,AluY"	LINE:dbRIP			c4p16560054FS	CTAACATGGTGAAACCCTGTCTC	c4p16560054ES	ACACCGCATATTCTCACTCATAG
chr4	16869824	16870179	17260726	17261081	-	93	355	4	L1PA4	"COLO1T,COLO1N"	259	354	L1PA4				c4p16870001FS	ACATAGTTTGGGAAAATCTGAATG	c4p16870001ES	AGAGGTTAAGAGTATGTCACAGGG
chr4	17771339	17771804	18162241	18162706	-	30739	465	41	noL1	"COLO1T,COLO1N"	105779	584	AluSx	"LINE:dbRIP,Ewing,Iskow,Stewart"			c4p17771571FS	TATTTGAACAATAAACAGCCTTTG	c4p17771571ES	AGTGATCTTCCTGTCTTGGACTAC
chr4	18161804	18162189	18552706	18553091	+	12	385	3	L1PA3	"COLO1T,COLO1N"	195	385	L1MA9				c4p18161996FS	ATGCTTCTCAAATTCTTTCAAAAC	c4p18161996ES	AACACTGCATGTTCTCACTCATAG
chr4	18199631	18199861	18590533	18590763	-	11	230	3	L1PA4	"COLO1T,COLO1N"	54	162					c4p18199746FS	CTCTGTCCCCATATATATTTCCTG	c4p18199746ES	GATAAGTTCATGTCCTTTCTAGGG
chr4	18688479	18688681	19079381	19079583	-	366	202	43	L1HS	"COLO1T,COLO1N"	774	389	"L1HS,L1ME1,(T)n"				c4p18688580FS	ATTGCAGTATTTGTCACGTAGAAG	c4p18688580ES	GATGAGTTCATATCCTTTGTAGGG
chr4	18779963	18780345	19170865	19171247	+	10223	382	35	L1HS	"COLO1T,COLO1N"	29912	394	"L1HS,(A)n"	LINE:dbRIP			c4p18780154FS	TCAAATAACCAACATCAACTTACG	c4p18780154ES	GATGAGTTCATATCCTTTGTAGGG
chr4	19328437	19328563	19719339	19719465	-	14	126	7	L1PA3	"COLO1T,COLO1N"	113	157	L1PA3				c4p19328500FS	GATAGTCTTTGGAGGAACATCATC	c4p19328500ES	CAAATGTCCAACAATGATAGACTG
chr4	19520814	19521548	19911716	19912450	+	13	734	3	noL1	"COLO1T,COLO1N"	42	68	"L2a,HAL1b,MIRc"				c4p19521181FS	ATTTCCAGGTACTGGGATTTTTAG	c4p19521181ES	TGAAAGTTTTTCTTTCGTCTCTG
chr4	20776118	20776694	21167020	21167596	+	1290	576	23	L1HS	"COLO1T,COLO1N"	4243	665	"L1HS,(A)n,L1ME1,MLT1A1"	LINE:dbRIP	KCNIP4		c4p20776406FS	TACAAGTTTTCTCCTCTTCCTGTC	c4p20776406ES	TGGGAGATATACCTAATGCTAGATG
chr4	21297994	21298211	21688896	21689113	+	15	217	4	L1PA2	"COLO1T,COLO1N"	126	224	"L2a,L1PA2"		KCNIP4		c4p21298102FS	TTGAAATTTCTTTTACAGAGAGGG	c4p21298102ES	CAAATGTCCAACAATGATAGACTG
chr4	21689224	21689664	22080126	22080566	-	417	440	7	L1PA4	"COLO1T,COLO1N"	5255	345	"MLT1H2,AluSx1,L1PA4"				c4p21689444FS	AAAAATACAAAAATTAGCTGGACG	c4p21689444ES	AACCATCATTCTCAGCAAACTATC
chr4	23231480	23232055	23622382	23622957	+	1739	575	32	L1HS	"COLO1T,COLO1N"	5180	600	"(CAAAAA)n,(TAA)n,L1HS,L1PA16"				c4p23231767FS	GAATTCTTGCTCTGATTCTTTCTC	c4p23231767ES	TAATGCTAGATGACACGTTAGTGG
chr4	23796774	23796913	24187676	24187815	+	35	139	6	L1HS	"COLO1T,COLO1N"	60	307	GA-rich				c4p23796843FS	AGTCCTTTACTGGCATTCATACTC	c4p23796843ES	TGGTAAAAGCACTAATGTGTCATC
chr4	25279328	25279674	25670230	25670576	-	25	346	4	noL1	"COLO1T,COLO1N"	72	98	AluSx1		SLC34A2		c4p25279501FS	GAAGAGTAGGATTTATTGGGACTG	c4p25279501ES	CATAGAAATCATAAATCCCCAAAG
chr4	26347340	26347604	26738242	26738506	+	247	264	9	L1PA2	"COLO1T,COLO1N"	680	358			TBC1D19		c4p26347472FS	AGTACCCTATAATTCAAGCCTGTG	c4p26347472ES	TCATTCTCAGTAAACTATCGCAAG
chr4	26538374	26538823	26929276	26929725	+	53	449	6	L1HS	"COLO1T,COLO1N"	178	447	"(TATAA)n,L1HS,MLT1A1"		STIM2		c4p26538598FS	AAATGTGGATTTCTGCTATTTTTC	c4p26538598ES	TCATTCTCAGTAAACTATCGCAAG
chr4	26652299	26652636	27043201	27043538	-	138	337	11	L1PA3	"COLO1T,COLO1N"	472	483					c4p26652467FS	GAACTTTGTATCACTCATTTGTGC	c4p26652467ES	TTTTATTATCTGGCCCTAACAATG
chr4	26986161	26986455	27377063	27377357	-	666	294	13	L1PA2	"COLO1T,COLO1N"	3552	388	L1PA2				c4p26986308FS	TTGAATTTCTGCACTACTTCTCTG	c4p26986308ES	GTGATGAGTTCATGTCCTTTGTAG
chr4	27807569	27807813	28198471	28198715	+	384	244	10	L1HS	"COLO1T,COLO1N"	1017	490	"L1HS,AluSq2"				c4p27807691FS	TTAAACTCCTCAGTTTCATGTCTG	c4p27807691ES	TTTGTACTCATGCAAAACTACCTG
chr4	28930993	28931407	29321895	29322309	+	220	414	5	noL1	"COLO1T,COLO1N"	9876	591	L1MB8	"LINE:dbRIP,Ewing,Iskow"			c4p28931200FS	AGCTGAATGTGAAATGAAAAATG	c4p28931200ES	GATGGTTTCCATGATTTCTCTTAG
chr4	29142043	29142380	29532945	29533282	-	261749	337	71	L1HS	"COLO1T,COLO1N"	511937	541	"L2a,L1HS"	LINE:dbRIP			c4p29142211FS	TATTGGCATTCGTAGTTCTAATTG	c4p29142211ES	GATGAGTTCATATCCTTTGTAGGG
chr4	34122108	34123148	34445713	34446753	+	117	1040	5	noL1	"COLO1T,COLO1N"	419	458	"L1P1,L1PA4"				c4p34122628FS	GTATACATGTGTCATGTTGGTGTG	c4p34122628ES	TCCTCTTTTTCTAATTGAATACCG
chr4	34673085	34673517	34996690	34997122	-	454	432	13	L1PA3	"COLO1T,COLO1N"	3809	419	L1PA3				c4p34673301FS	TACTTTAGTGCTGTTTCTGAGTGC	c4p34673301ES	CATTTGTCAATTCATCTCTCTGTG
chr4	35360554	35360670	35684159	35684275	-	54	116	3	noL1	"COLO1T,COLO1N"	137	116	L1PA3				c4p35360612FS	CTCTGCTTTTTAGAGTTTCCAGTC	c4p35360612ES	CTAATACTGCACTTTTCCGACAG
chr4	36732907	36733123	37056512	37056728	-	8284	216	30	noL1	"COLO1T,COLO1N"	132	67					c4p36733015FS	TTCCAGATAACTCTTTAAACTGGC	c4p36733015ES	GAAGAGAGAGAGAGAGAAAGTTGC
chr4	37237576	37237919	37561181	37561524	+	12	343	5	L1PA3	"COLO1T,COLO1N"	107	335	"MER5A1,L1PA3,L2"		C4orf19		c4p37237747FS	TAGTGTCTACAATGAAGGACATGG	c4p37237747ES	TCATTCTCAGTAAACTATCGCAAG
chr4	37628036	37628534	37951641	37952139	-	386	498	10	noL1	"COLO1T,COLO1N"	854	498	"LTR16E1,MIR,L1MC1"	"LINE:Ewing,Iskow"	TBC1D1		c4p37628285FS	TAGCATGAAAGTAACAATAGACGG	c4p37628285ES	ATAATGTGTCAATGTTGGTTCATC
chr4	39273569	39273954	39597174	39597559	+	51	385	7	L1PA3	"COLO1T,COLO1N"	443	390	"AluSz6,L1PA3"		C4orf34		c4p39273761FS	AAACTCCATCTCAAAGAAAGAAAG	c4p39273761ES	TGGAAATCATCATTCTCAGTAAAC
chr4	39812768	39813005	40136373	40136610	-	348	237	14	L1PA3	"COLO1T,COLO1N"	2704	292	"T-rich,L1PA3"		"KIAA1413,N4BP2"		c4p39812886FS	ATTCTCTCAGCTAGCAGTAGGTTC	c4p39812886ES	CATCAAAAATGATGAGTTCATGTC
chr4	40499204	40499629	40804447	40804872	-	62	425	11	L1PA3	"COLO1T,COLO1N"	440	424	"MamRep38,L1PA3,Charlie9"		NSUN7		c4p40499416FS	ATTGACGTTTGGCTCTTTCTATAC	c4p40499416ES	TGGAAATCATCATTCTCAGTAAAC
chr4	42795801	42795914	43101044	43101157	+	16	113	3	L1PA3	"COLO1T,COLO1N"	30	167	LTR33A_				c4p42795857FS	CTTCTTTGGCTTTACTCTCTATCG	c4p42795857ES	ACTATTCACAAAAGCAAAGACTTG
chr4	42881348	42881866	43186591	43187109	-	67	518	9	L1PA2	"COLO1T,COLO1N"	583	384	"(TA)n,L1PA2"				c4p42881607FS	GAACCAAAATTGTCAATAAAAACC	c4p42881607ES	AATGCTAGATGACAAGTTAGTGGG
chr4	42986555	42986850	43291798	43292093	+	603	295	19	L1PA2	"COLO1T,COLO1N"	1812	285	"(TAAA)n,L1PA2,(A)n"				c4p42986702FS	TAAGGTAGCAATAGGCAAATAACC	c4p42986702ES	TAGACTGGATTAAGAAAATGTGGC
chr4	43297906	43298220	43603149	43603463	-	360	314	7	L1HS	"COLO1T,COLO1N"	1591	484	AT_rich				c4p43298063FS	GAGCCTAGAACAAAGATCTGTAGC	c4p43298063ES	ATGATGCCTTGAAATAAATAATCC
chr4	43513926	43514476	43819169	43819719	-	862	550	23	L1HS	"COLO1T,COLO1N"	5405	789	"L1PA8,L1HS"				c4p43514201FS	AGAATGATGGTTTCTAGCTTCATC	c4p43514201ES	TAATGCTAGATGACACGTTAGTGG
chr4	45502281	45502385	45807524	45807628	+	21	104	6	noL1	"COLO1T,COLO1N"	72	387	L1PA3				c4p45502333FS	GTTGGTAAGCTATTGATTATTGCC	c4p45502333ES	CCTATTCCAAAATTGACCACATAC
chr4	45585108	45585349	45890351	45890592	-	375	241	10	L1PA3	"COLO1T,COLO1N"	2414	347	L1PA15				c4p45585228FS	AACTAATTATTGGTCTGTTCAGGG	c4p45585228ES	AGAAATCAATACACATGGACACAG
chr4	45752834	45753240	46058077	46058483	+	7665	406	28	L1HS	"COLO1T,COLO1N"	8223	407	"L2a,L1HS,(A)n"	LINE:dbRIP	GABRG1		c4p45753037FS	CTACAATGTATCCAATGCTTTCTG	c4p45753037ES	GATGAGTTCATATCCTTTGTAGGG
chr4	46132835	46133295	46438078	46438538	-	104	460	4	L1PA3	"COLO1T,COLO1N"	1177	301	L1PA3				c4p46133065FS	CAAATGAGACAGTCTAACTGATGG	c4p46133065ES	AACTAGAAATACCATTTGACCCAG
chr4	46136722	46136933	46441965	46442176	-	102	211	3	L1PA2	"COLO1T,COLO1N"	255	222	"(TTTTG)n,AT_rich,L1PA2"				c4p46136827FS	TTTTTAGTAGAGATGGGGTTTCAC	c4p46136827ES	TAAGATTTCTAGTTTTCCCCTTCC
chr4	46493834	46494392	46799077	46799635	+	2035	558	21	L1HS	"COLO1T,COLO1N"	6612	506	"L1HS,ERVL-B4-int"		COX7B2		c4p46494113FS	AGATCCATCTGTCTTCTTTACAGG	c4p46494113ES	ACACCGCATATTCTCACTCATAG
chr4	46577722	46578288	46882965	46883531	+	13022	566	42	L1HS	"COLO1T,COLO1N"	41793	790	"L1PA10,L1HS,MER4A1,AluSz"		COX7B2		c4p46578005FS	GTGATCCTCAGTCTCCTTAGTAGC	c4p46578005ES	TGGGAGATATACCTAATGCTAGATG
chr4	46702180	46702568	47007423	47007811	-	993	388	11	noL1	"COLO1T,COLO1N"	1727	387	AluY	"LINE:dbRIP,Ewing,Iskow,Stewart"			c4p46702374FS	GAAACCCCGTCTCTACTAAAAATAC	c4p46702374ES	TGATTTTTACCAAGCAAAATAAAAC
chr4	47047873	47048122	47353116	47353365	-	86	249	2	L1PA3	"COLO1T,COLO1N"	386	264			GABRB1		c4p47047997FS	TTTATGGTCATCTCATAACCTGTG	c4p47047997ES	TCATTCTCAGTAAACTATCGCAAG
chr4	47748398	47748785	48053641	48054028	-	26	387	7	L1HS	"COLO1T,COLO1N"	87	387	"AluJb,Charlie4a,L1HS"				c4p47748591FS	GAGACAGCTTCTCTCTCTCTGC	c4p47748591ES	TCATTCTCAGTAAACTATCGCAAG
chr4	48110736	48111370	48415979	48416613	-	24408	634	27	L1HS	"COLO1T,COLO1N"	52764	466	"L1HS,AT_rich,MIRc"		SLAIN2		c4p48111053FS	TTTGTATTGCTAGGTACATGTTGG	c4p48111053ES	TGGGAGATATACCTAATGCTAGATG
chr4	48432708	48433289	48737951	48738532	+	73014	581	53	L1HS	"COLO1T,COLO1N"	241485	582	"L1HS,L1MC1"		FRYL		c4p48432998FS	TTTGTATTTTTAGTAGAAACGGGG	c4p48432998ES	TGGGAGATATACCTAATGCTAGATG
chr4	48752270	48752740	49057513	49057983	-	20145	470	56	L1HS	"COLO1T,COLO1N"	77157	502	"L1MA8,L1HS,AluSq2"		FLJ21511		c4p48752505FS	AAGGTACTGTTGAATTCAGTTTGC	c4p48752505ES	TCATTCTCAGTAAACTATCGCAAG
chr4	48775258	48775566	49080501	49080809	+	1279	308	12	L1PA3	"COLO1T,COLO1N"	8638	310	"L1PA3,L1PA5"				c4p48775412FS	TTGAATCTATAAATTACCTTGGGC	c4p48775412ES	GTGATGAGTTCATGTCCTTTGTAG
chr4	52861836	52862357	53167079	53167600	-	45	521	8	L1PA3	"COLO1T,COLO1N"	174	521	"L1PA3,MIR,L1PA6"				c4p52862096FS	GATTCAGGGAAGCACAAATATAAC	c4p52862096ES	AATGCTAGATGACAAGTTAGTGGG
chr4	52880470	52880579	53185713	53185822	-	33	109	6	L1PA3	"COLO1T,COLO1N"	170	115	L1MA6				c4p52880524FS	TAGCCCTCAGTATCTATTCTTTCC	c4p52880524ES	TCATTCTCAGTAAACTATCGCAAG
chr4	53105137	53105834	53410380	53411077	+	22689	697	44	L1HS	"COLO1T,COLO1N"	57102	726	"L1HS,AluJo"				c4p53105485FS	TAGCTTAGGCTAGTCCAAATTGAG	c4p53105485ES	TCATTCTCAGTAAACTATCGCAAG
chr4	53383365	53383926	53688608	53689169	+	2921	561	22	L1HS	"COLO1T,COLO1N"	3293	563	"L1ME4a,L1HS"				c4p53383645FS	AATTCTCAAGGCACAGAGATTATG	c4p53383645ES	TAATGCTAGATGACACGTTAGTGG
chr4	53508673	53508909	53813916	53814152	+	16	236	3	noL1	"COLO1T,COLO1N"	48	235	L1M5		"AK055055,BC042091,SCFD2"		c4p53508791FS	ATAGCCTTTATCTCGTTTAATCCC	c4p53508791ES	CCAATTCTCTACAAATTGATCTAGC
chr4	57781819	57782162	58087062	58087405	-	2236	343	16	L1HS	"COLO1T,COLO1N"	4399	343	"L1HS,MIRb"	LINE:dbRIP			c4p57781990FS	CGTTTTGTCTATTCTTGGGATAAG	c4p57781990ES	GATGAGTTCATATCCTTTGTAGGG
chr4	57821011	57821430	58126254	58126673	-	56983	419	69	noL1	"COLO1T,COLO1N"	196186	325	L1PA13	"LINE:dbRIP,Ewing"			c4p57821220FS	ATTACTGCCTCAATTTCAGAACTC	c4p57821220ES	GAATATACTTTCTTTGCATCACCAC
chr4	58122947	58123293	58428190	58428536	-	18547	346	36	L1HS	"COLO1T,COLO1N"	35720	790	"T-rich,L1HS,L1PA6"				c4p58123120FS	CATACAATGAGTTAGGGAGGATTC	c4p58123120ES	GATGAGTTCATATCCTTTGTAGGG
chr4	58203872	58204469	58509115	58509712	-	71	597	3	L1PA2	"COLO1T,COLO1N"	61	597	"AluJo,L1MA4"				c4p58204170FS	GAGAAAATGTCTCTCTCCTCTTTG	c4p58204170ES	TAATGCTAGATGACGAGTTAGTGG
chr4	58224095	58224533	58529338	58529776	-	107	438	8	L1PA4	"COLO1T,COLO1N"	296	677	"L1PREC2,L1PA4"				c4p58224314FS	CCCTTTTAAAATTAACATAGACCG	c4p58224314ES	AACTAGAAATACCATTTGACCCAG
chr4	58455447	58455670	58760690	58760913	-	2350	223	14	L1PA3	"COLO1T,COLO1N"	5032	256	L1PA3				c4p58455558FS	GATACAAACAATGAGAAGAGGGAG	c4p58455558ES	TCATTCTCAGTAGAGTATCGCAAG
chr4	58582987	58583434	58888230	58888677	+	21650	447	29	L1HS	"COLO1T,COLO1N"	34886	632	"L1HS,(A)n"	LINE:dbRIP			c4p58583210FS	ATCTAGATCATCTTTTTCTGTGCC	c4p58583210ES	GATGAGATCATATCCTTTGTAGGG
chr4	58611829	58612323	58917072	58917566	-	153	494	8	noL1	"COLO1T,COLO1N"	269	375	L3	"LINE:dbRIP,Ewing"			c4p58612076FS	CCACCAGTGGGTGTACTTAATATG	c4p58612076ES	ATTTCGGATTTTTAGTAGAGAGGG
chr4	58790088	58790244	59095331	59095487	-	171	156	6	L1PA2	"COLO1T,COLO1N"	999	533	L1PA2				c4p58790166FS	GTTCATCCCTTGTACTCATTCTTC	c4p58790166ES	TCATTCTCAGTAAACTATCGCAAG
chr4	59136780	59137263	59442023	59442506	-	9654	483	30	L1HS	"COLO1T,COLO1N"	38270	724	"LTR16E2,L1HS"				c4p59137021FS	ATAAAAGAGGCAAGGAGATAAAGG	c4p59137021ES	TCATTCTCAGTAAACTATCGCAAG
chr4	59317218	59317626	59622461	59622869	+	34	408	3	noL1	"COLO1T,COLO1N"	1105	408	"L2a,LTR80A,L1M5"	"LINE:dbRIP,Ewing,Iskow"			c4p59317422FS	TGTAGCTAAACTGACATTTTCCAG	c4p59317422ES	TATATGCACAAACACACACAAAAG
chr4	59633134	59633596	59950539	59951001	+	55767	462	49	L1HS	"COLO1T,COLO1N"	157657	705	L1HS				c4p59633365FS	AGTGAAACTCCATCAGAAAGAAAG	c4p59633365ES	TCATTCTCAGTAAACTATCGCAAG
chr4	59882076	59882541	60199481	60199946	+	23	465	4	L1PA3	"COLO1T,COLO1N"	56	465	"MSTD,L1PA3"				c4p59882308FS	TTATTTACTTCACTCCTCTGTCCC	c4p59882308ES	AATGCTAAATGACAAGTTAATGGG
chr4	60268371	60268796	60585776	60586201	-	39786	425	81	L1HS	"COLO1T,COLO1N"	132048	668	"L1HS,L1PA5"				c4p60268583FS	TCGTTCTGTTTATATGATGGATTG	c4p60268583ES	TCATTCTCAGTAAACTATCGCAAG
chr4	61300751	61300952	61618156	61618357	+	70	201	4	noL1	COLO1T	0	0					c4p61300851FS	CAGAAACAGGAACAGATGTCTATC	c4p61300851ES	TCTCTACTTAAAAACAATGGGAGG
chr4	61532965	61533110	61850370	61850515	+	19	145	4	L1PA2	"COLO1T,COLO1N"	155	114	"HAL1,L1PA2"				c4p61533037FS	TTTGGATAGGTCTTTTTAATCTGG	c4p61533037ES	TTAATTAACATAGCCAATCAAGGG
chr4	62487731	62488299	62805136	62805704	-	20317	568	25	L1HS	"COLO1T,COLO1N"	56613	573	"L1HS,AluSg,L1ME2"		LPHN3		c4p62488015FS	TCTTGTGTGTTTTCCTTAACATTG	c4p62488015ES	TGGGAGATATACCTAATGCTAGATG
chr4	63274760	63275311	63592165	63592716	-	2709	551	31	L1HS	"COLO1T,COLO1N"	7152	682	"L1HS,AluSx"				c4p63275035FS	ATTTTTGTGTTTTTGGTAGAGACG	c4p63275035ES	ACACCGCATATTCTCACTCATAG
chr4	63349422	63349699	63666827	63667104	-	115	277	5	L1PA2	"COLO1T,COLO1N"	511	367	"L1PA2,L1PA15-16"				c4p63349560FS	TTCAGGTCTGATGTTTAAGTCTTG	c4p63349560ES	ATGATGACTTCATGTCCTTTGTAG
chr4	64142209	64142447	64459614	64459852	+	22	238	4	noL1	"COLO1T,COLO1N"	59	252	L1PA6				c4p64142328FS	ATGATGTGTGGTGTTATTTCTGAG	c4p64142328ES	AAGAGCTATTTATGACAAACCCAC
chr4	65253654	65253840	65571059	65571245	+	51	186	11	L1PA3	"COLO1T,COLO1N"	208	349	AluJo				c4p65253747FS	CCCTCTTAATCAATATCATTCCAC	c4p65253747ES	TGGAAATCATCATTCTCAGTAAAC
chr4	66323889	66324052	66641294	66641457	+	24	163	13	L1HS	"COLO1T,COLO1N"	632	558	"L1HS,L1ME3"	LINE:dbRIP			c4p66323970FS	CTTAGCCTTTCTGAGAGTGTTTTC	c4p66323970ES	CACATTTCAGTTTGTAAGATGGAC
chr4	66491550	66491669	66808955	66809074	-	691	119	6	noL1	"COLO1T,COLO1N"	447	290	MLT1C	"LINE:Ewing,Iskow"			c4p66491609FS	CTGACTTCAAGAGTACAGTTTTGC	c4p66491609ES	ATGCTTTGATTCTCATCTTGAGTC
chr4	68437664	68437892	68755069	68755297	+	228	228	16	L1PA2	"COLO1T,COLO1N"	1131	232	"L1PA2,A-rich"		AJ617629		c4p68437778FS	AAAGGTAAGTCATCTGTTGAAAGC	c4p68437778ES	TCATTCTCAGTAAACTATCGCAAG
chr4	71127855	71128036	71093266	71093447	+	5888	181	12	noL1	"COLO1T,COLO1N"	15117	510	Tigger1	"LINE:Ewing,Iskow,Stewart"	C4orf7		c4p71127945FS	GAGTCAATCTGTGTGTCAAACTTC	c4p71127945ES	TTTGCACATAGAAAGTGGACTATG
chr4	71234583	71235045	71199994	71200456	+	2721	462	15	L1HS	"COLO1T,COLO1N"	7841	549	"L1HS,(A)n"	LINE:dbRIP			c4p71234814FS	GAAAAGACTATAGAGTCCGCTCTG	c4p71234814ES	TCATTCTCAGTAAACTATCGCAAG
chr4	73134993	73135224	72916129	72916360	-	38	231	6	L1PA3	"COLO1T,COLO1N"	238	294	"L1PA3,MER4D1"		NPFFR2		c4p73135108FS	GAGGTTGAGTTAATCATTAGTGGC	c4p73135108ES	TCATTCTCAGTAAACTATCGCAAG
chr4	75255717	75256161	75036853	75037297	+	1608	444	6	L1PA4	"COLO1T,COLO1N"	4898	450	"AluSz6,L1PA4,L1ME1"		MTHFD2L		c4p75255939FS	CTGGAATTACAGACATATGCCAC	c4p75255939ES	AACACTGCATGTTCTCACTCATAG
chr4	75956280	75956453	75737256	75737429	-	10	173	4	L1PA2	"COLO1T,COLO1N"	61	354	L2a				c4p75956366FS	TGTCACTAGTCTGTGCTCTCTTTC	c4p75956366ES	ATGATGAGTTCATGTCCTTTGTAG
chr4	76257147	76257528	76038123	76038504	+	43	381	3	L1PA6	"COLO1T,COLO1N"	79	381	L1PA6				c4p76257337FS	ATTGGAATAGTTTCAGAAGGAATG	c4p76257337ES	ACTCCTCAGCAAATGTAAAAGAAC
chr4	78455506	78455904	78236482	78236880	+	53	398	11	L1HS	"COLO1T,COLO1N"	327	365	L1HS	LINE:dbRIP			c4p78455705FS	GATTCCAGTGATCTTACCTCTAGC	c4p78455705ES	TGTACGCATATTCTCACTCATAGG
chr4	79251893	79252533	79032869	79033509	+	41332	640	55	L1HS	"COLO1T,COLO1N"	91677	642	"L1HS,MamRep564"		FRAS1		c4p79252213FS	AAGTCACCTAACAGAAAAGCTCAC	c4p79252213ES	TGGGAGATATACCTAATGCTAGATG
chr4	79936443	79936897	79717419	79717873	+	23	454	6	L1PA3	"COLO1T,COLO1N"	234	619	L1PA3		"DKFZp434K0614,BMP2K"		c4p79936670FS	TTTGACTTTTCTTTATTCCCAGTC	c4p79936670ES	TAGAACTGGAAATACCATTTGACC
chr4	80850698	80851128	80631674	80632104	+	64	430	12	L1HS	"COLO1T,COLO1N"	282	582	"L1HS,AT_rich,L1PA13"				c4p80850913FS	AAAAATAGTGTGGAGAAAGAATGC	c4p80850913ES	TCATTCTCAGTAAACTATCGCAAG
chr4	80987530	80987850	80768506	80768826	+	278	320	5	noL1	"COLO1T,COLO1N"	767	465	AluSq	"LINE:dbRIP,Ewing"	GDEP		c4p80987690FS	CAACATCTTTACTCCTGACAACAC	c4p80987690ES	TGCAGTGACTCATGTCTATAATCC
chr4	81113080	81113555	80894056	80894531	+	864910	475	87	L1HS	"COLO1T,COLO1N"	832548	517	"L1HS,G-rich"	LINE:dbRIP	"ANTXR2,DKFZp667K1925"		c4p81113317FS	CTGAGTTGAAAGAACCACTTGAAC	c4p81113317ES	TCATTCTCAGTAAACTATCGCAAG
chr4	82031908	82032432	81812884	81813408	+	81694	524	57	L1HS	"COLO1T,COLO1N"	248979	672	"L1HS,L1M1,A-rich"		C4orf22		c4p82032170FS	GTATTACTCAAGAAATTTTTGCCC	c4p82032170ES	TAATGCTAGATGACACGTTAGTGG
chr4	82329193	82329963	82110169	82110939	+	14	770	6	L1PA3	"COLO1T,COLO1N"	44	814	"Charlie1a,L1PA3,(A)n,L1PA7"		PRKG2		c4p82329578FS	ATCCCTTGTAAGTTGTATTCCTTG	c4p82329578ES	TAATGCTAGATGACACGTTAGTGG
chr4	83150357	83150892	82931333	82931868	+	3434	535	28	L1HS	"COLO1T,COLO1N"	12624	528	L1HS	LINE:dbRIP			c4p83150624FS	CAAGTATAGGAAAAGGTGGTTCTC	c4p83150624ES	TCATTCTCAGTAAACTATCGCAAG
chr4	83164927	83165148	82945903	82946124	+	91	221	5	L1PA3	"COLO1T,COLO1N"	308	472	L1PA3				c4p83165037FS	AAACTCTAAAATTTGCTTCTGTGC	c4p83165037ES	CAAATGTCCAACAATGATAGACTG
chr4	83392346	83392703	83173322	83173679	+	158	357	7	L1PA3	"COLO1T,COLO1N"	309	357	"L1PA3,Charlie2b,AluSq2"				c4p83392524FS	GAAATACCAATTTACAAGGTGGAC	c4p83392524ES	ATCATCATTCTCGGTAAACTATCG
chr4	85536246	85536406	85317222	85317382	-	81	160	2	L1PA6	"COLO1T,COLO1N"	1042	203					c4p85536326FS	CATAATGAGACATCTTAGGGAAGG	c4p85536326ES	CTAATGTAAATGACGAGTTGATGG
chr4	86537649	86538356	86318625	86319332	+	45	707	10	L1HS	"COLO1T,COLO1N"	23	93	"L1HS,(A)n,A-rich"				c4p86538002FS	TTTCAAAATATTCTTTCCTCAACC	c4p86538002ES	TAATGCTAGATGACACGTTAGTGG
chr4	86762173	86762304	86543149	86543280	-	65	131	5	L1PA4	"COLO1T,COLO1N"	251	417	"L1MA9,L1PA4"		ARHGAP24		c4p86762238FS	ACATCCTTTGCCTACTTTTTAATG	c4p86762238ES	TAAATGTCCAACAACGATAGACTG
chr4	87034232	87034660	86815208	86815636	+	280361	428	129	L1HS	"COLO1T,COLO1N"	660643	838	L1HS		ARHGAP24		c4p87034446FS	ATATCATTTTTATGCCTTTGCATC	c4p87034446ES	TCATTCTCAGTAAACTATCGCAAG
chr4	87035113	87035542	86816089	86816518	+	14	429	6	noL1	"COLO1T,COLO1N"	660672	927	"L1PB2,(A)n,AluSz"		ARHGAP24		c4p87035327FS	TGTAGACCATGAAACATCAATAGC	c4p87035327ES	GCCTGTCTCTGTTAAAAATACCAC
chr4	87768392	87768730	87549368	87549706	-	12226	338	32	L1HS	"COLO1T,COLO1N"	22951	789	"L1HS,L1ME1"		PTPN13		c4p87768561FS	TGCTGATTAGTATTCCATTGTGAG	c4p87768561ES	TCATTCTCAGTAAACTATCGCAAG
chr4	88009267	88009614	87790243	87790590	+	133	347	11	L1PA3	"COLO1T,COLO1N"	586	349	"L2b,L1PA3,AT_rich"				c4p88009440FS	ATTTAGAAATACGGTCTTGCTTTG	c4p88009440ES	ACACTGCATATTCTCACTCATAGG
chr4	88485676	88485933	88266652	88266909	+	73	257	4	noL1	"COLO1T,COLO1N"	281	344	L1M4		HSD17B11		c4p88485804FS	CTTACTCTGTTTTTAGTATCGGGG	c4p88485804ES	TGTAGTCCTAGATACTCAGGAGGC
chr4	88486796	88487343	88267772	88268319	-	521	547	6	L1HS	"COLO1T,COLO1N"	1828	547	"AluSz6,L1HS,AT_rich,FLAM_A"	LINE:dbRIP	HSD17B11		c4p88487069FS	TAAAAATAGAAAAATTAGCTGGGC	c4p88487069ES	ACACCGCATATTCTCACTCATAG
chr4	88705277	88705868	88486253	88486844	+	1087329	591	85	L1HS	"COLO1T,COLO1N"	3350625	702	"LTR85c,L1HS,L1ME3F"	LINE:dbRIP			c4p88705572FS	AGTAGAGTTTTACTGTGGGCTTTG	c4p88705572ES	TGGGAGATATACCTAATGCTAGATG
chr4	89300965	89301394	89081941	89082370	-	8434	429	20	L1HS	"COLO1T,COLO1N"	23405	462	"AluJo,L1HS,AluSx"		ABCG2		c4p89301179FS	CAAAGTAAAAACAAATCAAAACCC	c4p89301179ES	TCATTCTCAGTAAACTATCGCAAG
chr4	93074430	93074631	92855407	92855608	-	15	201	2	noL1	"COLO1T,COLO1N"	17	201	"L1MCb,AluSc"				c4p93074530FS	TTTGTTCTATGTTTAGCCTCCTTC	c4p93074530ES	AAATTTCAGGAAAGCAAATCTAAG
chr4	93124362	93124932	92905339	92905909	+	2932	570	30	L1HS	"COLO1T,COLO1N"	9836	587	"L1HS,LTR16E1,L1M5"				c4p93124647FS	GGGAAAACATTGTAATAACCAGAC	c4p93124647ES	GATATACCTAATGCCAGATGACAC
chr4	94264239	94264492	94045216	94045469	+	3643	253	18	L1HS	"COLO1T,COLO1N"	6422	259	L1HS		GRID2		c4p94264365FS	AAGTTCTGGGAGACTGACTCATAC	c4p94264365ES	AAAAATTCTTACCATAACCTGCTG
chr4	94578494	94578791	94359471	94359768	-	15	297	4	L1PA4	"COLO1T,COLO1N"	70	297	L2c		GRID2		c4p94578642FS	GAGAGAGACCTTCTTTTTGCATAG	c4p94578642ES	AATGCTAAATGACAAGTTAATGGG
chr4	94748414	94748768	94529391	94529745	-	125	354	13	L1HS	"COLO1T,COLO1N"	177	312	"L1HS,AT_rich"		GRID2		c4p94748591FS	TTTTCCAAATTTGTCAGTCTTTTC	c4p94748591ES	AACTAGAAATACCATTTGACCCAG
chr4	94777934	94778537	94558911	94559514	-	189472	603	35	L1HS	"COLO1T,COLO1N"	539741	499	L1HS	LINE:dbRIP	GRID2		c4p94778235FS	CTTCCTCTCATCTTCTTTTGCTAC	c4p94778235ES	ACACCGCATATTCTCACTCATAG
chr4	95717752	95718050	95498729	95499027	-	15	298	4	noL1	"COLO1T,COLO1N"	14	297	"(T)n,AluYa5"	Alu:dbRIP	"PDLIM5,LIM"		c4p95717901FS	TAATCCCTTCTGAATGTTAATTCC	c4p95717901ES	AGTACTTTTCCATAACCTGTTTGC
chr4	95727127	95727485	95508104	95508462	-	24	358	5	noL1	"COLO1T,COLO1N"	5	68			"PDLIM5,LIM"	PDLIM5.L	c4p95727306FS	TAAGGCTTGTTTTCCCTAGTATTG	c4p95727306ES	GGACTTTATTTGCTCATTATCCTC
chr4	96467858	96468281	96248835	96249258	-	368	423	17	L1HS	"COLO1T,COLO1N"	1253	469	"L1HS,LTR1C"		UNC5C		c4p96468069FS	AAGCATATCACACACAGTGTTCTC	c4p96468069ES	TCATTCTCAGTAAACTATCGCAAG
chr4	96526199	96526417	96307176	96307394	-	707	218	13	L1PA2	"COLO1T,COLO1N"	2010	366	L1PA2		UNC5C		c4p96526308FS	CATCATGATTCTTCCAGTAGACAG	c4p96526308ES	AAGGATTAAACAAGCATTGGATAG
chr4	99261872	99262448	99042849	99043425	-	16	576	3	L1PA10	"COLO1T,COLO1N"	44	67	"L1PA10,AluSc"		C4orf37		c4p99262160FS	CTTTTTCATGATATGGATTCTTCC	c4p99262160ES	GATATACTAAATGGGCAAAACCTG
chr4	99732445	99732663	99513422	99513640	-	620	218	9	L1HS	"COLO1T,COLO1N"	6054	219	"L1HS,LTR54B"		TSPAN5		c4p99732554FS	GCTACAGTAATCAAGACAGTGTGG	c4p99732554ES	GATGAGTTCATATCCTTTGTAGGG
chr4	101140346	101140682	100921323	100921659	-	18	336	2	L1PA2	"COLO1T,COLO1N"	173	365	MIR3				c4p101140514FS	CCTACATTATAATTTCCCAGGTTG	c4p101140514ES	TCATTCTCAGTAAACTATCGCAAG
chr4	103007297	103008185	102788274	102789162	+	9402	888	57	L1HS	"COLO1T,COLO1N"	51113	879	"(TAAA)n,L1HS,L1MCa"	"LINE:dbRIP,Alu:Hormozdiari"	BANK1		c4p103007741FS	AATTGGCGTTCTTAGACTATTCAC	c4p103007741ES	GTTGAATTTCTCTTCAGAAACCAC
chr4	103104535	103104975	102885512	102885952	-	9006	440	21	L1PA3	"COLO1T,COLO1N"	58331	433	"L1PA3,AT_rich"		BANK1		c4p103104755FS	AATCGAATATATCAAGTCTGGAGC	c4p103104755ES	TCATTCTCAGTAAACTATCGCAAG
chr4	103183854	103184227	102964831	102965204	-	64	373	4	L1PA3	"COLO1T,COLO1N"	173	373	L1PA3		BANK1	"BANK1.10,BANK1.14,BANK1.9"	c4p103184040FS	ATCCTTGCTTATCATCAAAAAGTC	c4p103184040ES	ATCATCATTCTCAGTAAACTGTCG
chr4	104092244	104092628	103872795	103873179	-	8591	384	7	L1HS	"COLO1T,COLO1N"	40692	486	"L1MEd,L1HS"	LINE:dbRIP	NHEDC1		c4p104092436FS	AAAAATTGGAGACATGAGAAGAAG	c4p104092436ES	GATGAGTTCATATCCTTTGTAGGG
chr4	104434138	104434263	104214689	104214814	+	481	125	11	noL1	"COLO1T,COLO1N"	693	173		"LINE:Ewing,Stewart"			c4p104434200FS	CTTTCTCACCTGTGCCTAAGTATG	c4p104434200ES	CAGTCAGCAATATTTATCAAGCAC
chr4	105947219	105947673	105727770	105728224	+	142	454	17	L1PA4	"COLO1T,COLO1N"	373	901	"L1MA3,L1PA4"				c4p105947446FS	ATTTGAGGTCTTAGGAAATTTTTG	c4p105947446ES	AACCATCAATCTCAGCAAACTATC
chr4	106447636	106448126	106228187	106228677	-	42	490	10	L1PA2	"COLO1T,COLO1N"	274	480	L1PA2				c4p106447881FS	AAACAATTTTTACATCTTTCACCG	c4p106447881ES	TACCCAAAGGACTATAAATCATGC
chr4	108346731	108347336	108127282	108127887	-	170	605	7	L1HS	"COLO1T,COLO1N"	533	200	"(CA)n,L1HS"	LINE:dbRIP	dickkopf-2		c4p108347033FS	ACATTCATACCCAGGTAATGTTTC	c4p108347033ES	TGGGAGATATACCTAATGCTAGATG
chr4	108497190	108497291	108277741	108277842	+	8052	101	24	L1HS	"COLO1T,COLO1N"	22674	96	"L1HS,(TAAAA)n,L1PA4"	LINE:dbRIP			c4p108497240FS	TTGTGATAGTTTGCTGAGAATGAC	c4p108497240ES	CAAATGTCCAACAATGATAGACTG
chr4	108818738	108819112	108599289	108599663	+	39	374	4	L1PA4	"COLO1T,COLO1N"	108	335	"L1MCc,L1PA4"		PAPSS1		c4p108818925FS	TTTTAGTCTCTAGACCTGCTCCTG	c4p108818925ES	TATACACCGTGGAATACTATGCAG
chr4	110486309	110486527	110266860	110267078	+	1597	218	5	L1PA3	"COLO1T,COLO1N"	5978	219	"L1PA3,L1PA6"				c4p110486418FS	ATTCTGTCATAACTACCCAAGGAC	c4p110486418ES	TCATTCTCAGTAAACTATCGCAAG
chr4	110830741	110830853	110611292	110611404	+	10	112	4	noL1	"COLO1T,COLO1N"	33	71	AluSx1		CASP6		c4p110830797FS	TTAGTATTAGCAGCCTACCATCAG	c4p110830797ES	CCCAAGATAGACAATGATTGAGAC
chr4	111898082	111898372	111678633	111678923	-	10	290	4	noL1	"COLO1T,COLO1N"	13	515	L1PA3				c4p111898227FS	CAAGGTGATAGTATTAGGAGGTGG	c4p111898227ES	AACTAGAAATACCATTTGACCCAG
chr4	112335719	112335898	112116270	112116449	-	1094	179	17	L1PA4	"COLO1T,COLO1N"	3938	205	"L1PA4,THE1D"				c4p112335808FS	AAGAAACCCAGGAATACCTTTAAC	c4p112335808ES	CAAATGTCCAACAATGATAGACTG
chr4	112630533	112631099	112411084	112411650	+	12284	566	51	L1HS	"COLO1T,COLO1N"	22024	725	"L1HS,L1PA8A"				c4p112630816FS	GTCCTCTAAGTTTCCTCCTCTTG	c4p112630816ES	TAATGCTAGATGACACGTTAGTGG
chr4	112848420	112848684	112628971	112629235	+	244	264	5	noL1	"COLO1T,COLO1N"	1023	322	AluSx3	"LINE:dbRIP,Ewing,Iskow,Stewart"			c4p112848552FS	TTTAGTAAATACAGTTTTTGGCCG	c4p112848552ES	ATGTGACCACTAAATTGTTTGTTG
chr4	113041386	113041690	112821937	112822241	+	93514	304	40	L1HS	"COLO1T,COLO1N"	266891	313	"L1MC,L1HS,L1MC1"	LINE:dbRIP			c4p113041538FS	GATTCTATAAACCCACTTAGAGCG	c4p113041538ES	GATGAGTTCATATCCTTTGTAGGG
chr4	115010735	115011002	114791286	114791553	-	85	267	8	L1PA2	"COLO1T,COLO1N"	47	270	"L1PA2,MLT1H,THE1D"				c4p115010868FS	TTGGAATAGAATATGTACGTGTGG	c4p115010868ES	TAGCCAGTAGCTGGAATTCTTTAC
chr4	115352120	115352556	115132671	115133107	+	549	436	10	noL1	"COLO1T,COLO1N"	3684	490	MLT1L	"LINE:Ewing,Iskow,Stewart"			c4p115352338FS	CCATTTTTATTCAATACCTTTTGG	c4p115352338ES	AAATACTGAAAGGACTGAAACCAG
chr4	116845572	116846004	116626123	116626555	-	13	432	2	noL1	"COLO1T,COLO1N"	22	433	L1PA8				c4p116845788FS	TCATCCTGAGTCTTCCTTAACTTC	c4p116845788ES	ACTAGAAATACCATTTGATCCAGC
chr4	117344074	117344495	117124625	117125046	-	11523	421	39	L1HS	"COLO1T,COLO1N"	58624	329	"(CA)n,L1HS"				c4p117344284FS	CAACTTAAAGGAGCACACTTTTG	c4p117344284ES	TCATTCTCAGTAAACTATCGCAAG
chr4	117371603	117371896	117152154	117152447	+	323	293	6	noL1	"COLO1T,COLO1N"	654	250	L1M4c				c4p117371749FS	TAGATAAAACATTGTAGCTTCCCC	c4p117371749ES	ATAATGTCCCAATTAAGAAAAGCC
chr4	117583344	117583539	117363896	117364091	+	17361	195	27	L1PA4	"COLO1T,COLO1N"	90665	231	L1PA4				c4p117583441FS	TTTAAATGAGAATAGTGATCGCAC	c4p117583441ES	CAAATGTCCAACAATGATAGACTG
chr4	117828271	117828852	117608823	117609404	+	109	581	6	noL1	"COLO1T,COLO1N"	239	584	"MER21C,MER61A,L1PA2,(A)n"				c4p117828561FS	TTATTAAACCTGAGAGAGGTCTGG	c4p117828561ES	GCTGCTATAAAGACACATGCATAC
chr4	118551680	118551829	118332232	118332381	-	274	149	6	noL1	"COLO1T,COLO1N"	828	367	MSTC	"LINE:Ewing,Iskow,Stewart"			c4p118551754FS	ATTGTGAAAATATTCAGACATTGG	c4p118551754ES	ACCCATGAAATTAGTCCTACTCAG
chr4	118984753	118984944	118765305	118765496	+	32	191	2	noL1	"COLO1T,COLO1N"	1052	186		"LINE:Ewing,Iskow,Stewart"			c4p118984848FS	TGGCTTTTGGATACTTAGAAAGAG	c4p118984848ES	AAGTAAAGGAAAATTAAGGCCAAC
chr4	121088954	121089384	120869506	120869936	-	2300	430	13	L1HS	"COLO1T,COLO1N"	2724	673	"AluSz6,L1HS,L1MC4,(TTTG)n"	LINE:dbRIP			c4p121089169FS	CTAACCAACATGGCAAAACTG	c4p121089169ES	TGAGTTCATATCCTTTGTATCGAC
chr4	121306556	121306747	121087106	121087297	+	38	191	7	L1HS	"COLO1T,COLO1N"	100	191	"L1HS,L1PB4"				c4p121306651FS	CACCAACAGTGTATAAGCATTCTC	c4p121306651ES	ACAATGTTCACAATTAAGTCCTTG
chr4	121341428	121341664	121121978	121122214	-	153	236	7	L1PA3	"COLO1T,COLO1N"	659	277	"L1PA3,(T)n"				c4p121341546FS	TATAAAGGGGTCAATTAAGCAAAG	c4p121341546ES	TTCTAGTTTTATTCCCTTGTGGTC
chr4	122451661	122452077	122232211	122232627	+	101	416	12	L1HS	"COLO1T,COLO1N"	532	858	"AluSx1,(A)n"				c4p122451869FS	TTTTAGATGAATCTCAGTCTGCTG	c4p122451869ES	ACACCGCATATTCTCACTCATAG
chr4	123792841	123793308	123573391	123573858	-	3226	467	24	L1HS	"COLO1T,COLO1N"	10682	358	"L1HS,(T)n"	LINE:dbRIP	BC045668		c4p123793074FS	ACAATTACATGTGTTCATTGAAGG	c4p123793074ES	TCATTCTCAGTAAACTATCGCAAG
chr4	125162826	125163042	124943376	124943592	-	13	216	4	L1HS	"COLO1T,COLO1N"	18	406	"L1HS,AT_rich,MIRb"	LINE:dbRIP			c4p125162934FS	GTAATGAGAAATTCAAAGATGCTG	c4p125162934ES	TCATTCTCAGTAAACTATCGCAAG
chr4	125295653	125296254	125076203	125076804	+	1150	601	23	L1HS	"COLO1T,COLO1N"	2625	601	"L1HS,(A)n,MIR3"				c4p125295953FS	TGACAAATACACAAAAACAAAGAG	c4p125295953ES	TAATGCTAGATGACACGTTAGTGG
chr4	125439220	125439413	125219770	125219963	+	14	193	3	L1PA4	"COLO1T,COLO1N"	11	65	"AluJr,L1MEg,L1PA4"				c4p125439316FS	ACAAACAAAATTAGAATAGCAGCC	c4p125439316ES	ATAGACTGGGTTAAGAAAATGTGG
chr4	126888273	126888491	126668823	126669041	-	74	218	4	L1PA3	"COLO1T,COLO1N"	393	229	L1PA3				c4p126888382FS	TGCTTAGCTAATGAAATGTGAGAG	c4p126888382ES	TCATTCTCAGTAAACTATCGCAAG
chr4	127070725	127071172	126851275	126851722	+	346	447	18	L1PA2	"COLO1T,COLO1N"	1103	470	L1MA1				c4p127070948FS	TTTATTTTCTCCTGCTGCTTTTAG	c4p127070948ES	TGGGAGATATACCTAATGCTAGATG
chr4	127815668	127816113	127596218	127596663	+	741	445	4	noL1	"COLO1T,COLO1N"	135	443	L1PA6	"LINE:dbRIP,Ewing"			c4p127815890FS	TAGGTATTTCTCCTAATGCTGTCC	c4p127815890ES	AAAATTTTTCAATCTACCCATCTG
chr4	128167199	128167319	127947749	127947869	+	544	120	8	L1PA2	"COLO1T,COLO1N"	2542	533	L1PA3				c4p128167259FS	ATATTTTGGCTGGATAATGCATAC	c4p128167259ES	GATGAGTTCATATCCTTTGTAGGG
chr4	129097076	129097456	128877626	128878006	+	33	380	3	noL1	"COLO1T,COLO1N"	13	380	"AluSp,AluY"		MFSD8		c4p129097266FS	TTTTTCCTCTATTCTCCTATGTGC	c4p129097266ES	AGCAGAACAAATAATTGACTGATG
chr4	129184517	129184762	128965067	128965312	-	157	245	5	noL1	"COLO1T,COLO1N"	2115	305	L2c	"LINE:Ewing,Iskow"			c4p129184639FS	CCTCCTGAGTAGCTGGGATTAC	c4p129184639ES	CCGGCTAACTTTTTGTATTTTTAG
chr4	130390668	130390770	130171218	130171320	+	33	102	3	noL1	"COLO1T,COLO1N"	58	104	"AluYa5,MER91A"				c4p130390719FS	ACTCAGGCTCCATCATCTATTTAC	c4p130390719ES	GGTAAACATTTAGAATGCCCATAG
chr4	130435619	130436024	130216169	130216574	-	36	405	3	L1PA2	"COLO1T,COLO1N"	391	331	"L2a,L1PA2"				c4p130435821FS	CGTGAATACATTGAAATGAAAGAG	c4p130435821ES	TTGTCAGTAAACTATCGCAAGAAC
chr4	130835385	130835793	130615935	130616343	+	2157	408	31	L1HS	"COLO1T,COLO1N"	4184	206	"L1HS,(A)n"				c4p130835589FS	ATTAAAAACTTCCAAAGTAAGGGG	c4p130835589ES	AAGGAGAGTATAAACCAACAGACG
chr4	131155912	131156773	130936462	130937323	-	690	861	14	L1HS	"COLO1T,COLO1N"	2216	861	"L1HS,(T)n,MIRb"				c4p131156342FS	TGTCTTTCATTACCCTTGGAATAG	c4p131156342ES	CATAGGTGAGAATTGAACAATGAG
chr4	131875467	131875792	131656017	131656342	+	12	325	5	L1PA3	"COLO1T,COLO1N"	19	67	"L1PA3,AT_rich,L1PA16"				c4p131875629FS	ACATGGGTATATTGTATGATGCAG	c4p131875629ES	GAATTGAACAATGAGAATACATGG
chr4	131953390	131953693	131733940	131734243	-	81	303	5	L1PA4	"COLO1T,COLO1N"	919	153	L1PA4				c4p131953541FS	TTTACAAGCTTTCAACAACAGAAC	c4p131953541ES	AAAAAGTTTGAGAATGATGGTTTC
chr4	132400734	132401023	132181284	132181573	-	1198	289	14	noL1	"COLO1T,COLO1N"	2843	246	MER89	"LINE:Ewing,Iskow,Stewart"			c4p132400878FS	CTAAAATGAGGTTTTTAAAGTGCC	c4p132400878ES	TCCAAGTCATGATACCATTACAAC
chr4	132565654	132566067	132346204	132346617	+	33	413	4	L1PA3	"COLO1T,COLO1N"	243	413	"L1PA3,AT_rich"				c4p132565860FS	GAATTTGTCAGGATCTGTTTTACC	c4p132565860ES	ATGATGAGTTCATGTCCTTTGTAG
chr4	133029632	133029742	132810182	132810292	-	26326	110	20	noL1	"COLO1T,COLO1N"	48987	192	T-rich		BC041865		c4p133029687FS	AGAAAGTGTAGTGGAAAAGAGAGG	c4p133029687ES	TTTGCTTTGGTATACATAGTTTGC
chr4	133519858	133520552	133300408	133301102	-	16	694	3	noL1	"COLO1T,COLO1N"	45	74	L2a				c4p133520205FS	TGACTAATACTGGATTGGCTTATG	c4p133520205ES	CTGTGCATTTTCTTTTATGTTGTC
chr4	134090991	134091244	133871541	133871794	+	36	253	6	L1PA2	"COLO1T,COLO1N"	63	254	"L1PA2,(A)n,MSTA"				c4p134091117FS	TTCCTTTTACTAATTTTGGGTTTG	c4p134091117ES	TCATTCTCAGTAAACTATCGCAAG
chr4	134815839	134816304	134596389	134596854	+	3263	465	19	noL1	"COLO1T,COLO1N"	12746	453		"LINE:Ewing,Iskow,Stewart"			c4p134816071FS	GTGTCTATCCTAAAAGAAAGCTGC	c4p134816071ES	AACAACTGAGCAGATACCATATTTC
chr4	135429320	135429748	135209870	135210298	-	128	428	5	noL1	"COLO1T,COLO1N"	249	628	L1PA4				c4p135429534FS	AGCAGTTCCAGTAGAATTTCAAAG	c4p135429534ES	AACTAGAAATACCATTTGACCCAG
chr4	136225922	136226361	136006472	136006911	+	1728	439	17	L1HS	"COLO1T,COLO1N"	562	261	"L1HS,HERVL74-int"				c4p136226141FS	AACAAAATGAGACCTCATAAATCC	c4p136226141ES	GATGAGTTCATATCCTTTGTAGGG
chr4	136514762	136515509	136295312	136296059	-	11	747	4	L1HS	"COLO1T,COLO1N"	1	65	"L1PA8,L1HS"				c4p136515135FS	TTAAGTTCTGGAATACAAGTGCAG	c4p136515135ES	GGAGGGATAGCATTAGGAGATATAC
chr4	136637905	136638633	136418455	136419183	-	14	728	4	noL1	COLO1T	0	0	"Tigger1,(CA)n"				c4p136638269FS	TCTACTGGTACATTTCCATCAGAG	c4p136638269ES	TATATGTGTGTGTGTGTGTGTGTG
chr4	137433722	137434170	137214272	137214720	-	135263	448	31	L1HS	"COLO1T,COLO1N"	156166	448	"L1HS,AluSq2,ERVL-E-int"	LINE:dbRIP			c4p137433946FS	GAATAGCTGAAATTACAGGTGCC	c4p137433946ES	TCATTCTCAGTAAACTATCGCAAG
chr4	138396763	138397258	138177313	138177808	+	1794	495	20	noL1	"COLO1T,COLO1N"	9736	418	MER31-int	"LINE:Ewing,Iskow,Stewart"			c4p138397010FS	CTGTGGGTAGTTTTGATTTTACTG	c4p138397010ES	AGCACTAAAAGACTAAGCCAAATG
chr4	138850787	138850896	138631337	138631446	-	19	109	2	noL1	COLO1T	0	0	L1MA7				c4p138850841FS	AATGCTATCAATTTTTACATGCTG	c4p138850841ES	ACCAACACATACACAGATCTTAGG
chr4	139692614	139693001	139473164	139473551	+	3988	387	35	L1HS	"COLO1T,COLO1N"	11391	684	"L1HS,L1PA8A,(A)n"	LINE:dbRIP			c4p139692807FS	ACTTTGCTATTGTAAATCATGCTG	c4p139692807ES	GATGAGTTCATATCCTTTGTAGGG
chr4	141662568	141663077	141443118	141443627	+	329	509	10	L1PA4	"COLO1T,COLO1N"	359	389	L1PA4				c4p141662822FS	TTTCAGGAGGATCTCCATTATTAC	c4p141662822ES	GGAGGGATAGCATTAGGAGATATAC
chr4	142037245	142037854	141817795	141818404	+	3400	609	37	L1HS	"COLO1T,COLO1N"	5792	669	L1HS		RNF150		c4p142037549FS	TTCTAAGTGGTATCTTATCCCTGC	c4p142037549ES	ACACCGCATATTCTCACTCATAG
chr4	142211750	142212108	141992300	141992658	+	14	358	3	L1PA2	"COLO1T,COLO1N"	39	119	L1PA2		RNF150		c4p142211929FS	AGTGTGTAGGTAGCTCTGTTACCC	c4p142211929ES	AACTAGAAATACCATTTGACCCAG
chr4	143279108	143279323	143059658	143059873	+	70	215	7	L1PA3	"COLO1T,COLO1N"	130	132	"L1PA3,MIR"		INPP4B		c4p143279215FS	AAAGATGAGCAAAATCTTTATTGG	c4p143279215ES	CAAATGTCCAACAATGATAGACTG
chr4	144246843	144247248	144027393	144027798	+	392	405	21	L1PA2	"COLO1T,COLO1N"	1102	405	"L1PA2,A-rich"				c4p144247045FS	GAAAAACATAAATGAATGCTAGGC	c4p144247045ES	TCATTCTCAGTAAACTATCGCAAG
chr4	144586150	144586390	144366700	144366940	-	10	240	3	L1PA16	"COLO1T,COLO1N"	5	76	L1PA16		GAB1		c4p144586270FS	GAACTAATTTTACATTCCCACCAG	c4p144586270ES	TCATTCTCAGTAAACTATCGCAAG
chr4	145944365	145944534	145724915	145725084	-	35	169	2	L1PA4	"COLO1T,COLO1N"	122	248	"L1PB3,L1MB4,L1PA4"				c4p145944449FS	TCCAATCCATGTATTTGTGTTATC	c4p145944449ES	ATGATGAGTTCATGTCCTTTGTAG
chr4	147373988	147374625	147154538	147155175	-	12	637	5	noL1	"COLO1T,COLO1N"	7	76	"A-rich,AluSc"				c4p147374306FS	TTTGTATTTTTAGTAGAGACGGGG	c4p147374306ES	GCAATTATTTATCCATCATTTTCC
chr4	147444780	147445019	147225330	147225569	+	5502	239	14	noL1	"COLO1T,COLO1N"	10571	238	L1P1	"LINE:Beck,dbRIP,Ewing,Stewart"	SLC10A7		c4p147444899FS	ACCACATACTTGGAAGTAAAGCTC	c4p147444899ES	TCTTTACAACAACCCTTTACGATAG
chr4	147446194	147446582	147226744	147227132	+	170	388	8	L1PA3	"COLO1T,COLO1N"	563	389	AT_rich		SLC10A7	"SLC10A7.5,SLC10A7.6,SLC10A7.3"	c4p147446388FS	TGCAAATCAATATTTTTCTCAATC	c4p147446388ES	TTCTCAGTAAACTATCGCAACAAC
chr4	147762586	147763167	147543136	147543717	+	11579	581	28	L1HS	"COLO1T,COLO1N"	36606	383	"L1HS,FordPrefect"	LINE:dbRIP			c4p147762876FS	GAAAGAATTCTGAGCATTAAGGAC	c4p147762876ES	GAGGGATAGCATTGGGAGATATAC
chr4	151595349	151595460	151375899	151376010	-	11	111	4	L1PA2	"COLO1T,COLO1N"	36	108	L1PB3		"LBA,DKFZp686K03100,LRBA"		c4p151595404FS	CTGGGACAGAATTCTAAAAAGATG	c4p151595404ES	AAAAACCAAACACCACATATTCTC
chr4	152559583	152560234	152340133	152340784	-	307419	651	83	L1HS	"COLO1T,COLO1N"	898309	768	"L1HS,MLT2B4"	"LINE:dbRIP,Iskow"	FAM160A1		c4p152559908FS	TTTTGTTTCTCTTTCCAGTTTTTC	c4p152559908ES	TGGGAGATATACCTAATGCTAGATG
chr4	152951787	152952251	152732337	152732801	-	1692	464	6	noL1	"COLO1T,COLO1N"	2654	487	MIRb	"LINE:Ewing,Stewart"			c4p152952019FS	AGTTTGCTACCTGATTTCTTTCTG	c4p152952019ES	CCAAAGCTAAAAATTCAAAATGTC
chr4	154557851	154558209	154338401	154338759	+	92	358	4	noL1	"COLO1T,COLO1N"	102	72	"AluJb,AluSq"				c4p154558030FS	AAAACAAAACAAAACAAAAAGCTC	c4p154558030ES	TTTAAAATTTTTGAGGCCAGG
chr4	155530681	155531130	155311231	155311680	-	19	449	4	L1PA2	"COLO1T,COLO1N"	3	353	"(CA)n,L1PA2,AT_rich"		DCHS2		c4p155530905FS	CATAAAAATTAGGTTGCTGGTAGC	c4p155530905ES	TGTATTTGAAAATGATTGTTGTCC
chr4	157190599	157190858	156971149	156971408	+	56	259	13	L1HS	"COLO1T,COLO1N"	55	257	"L1HS,AT_rich,L1MA5"				c4p157190728FS	AAAGGATTATGTCAAGATAGACGG	c4p157190728ES	CAAATGTCCAACAATGATAGACTG
chr4	158006246	158006436	157786796	157786986	-	48	190	5	L1PA4	"COLO1T,COLO1N"	296	320	Helitron3Na_Mam		PDGFC		c4p158006341FS	CATTTCACATACTTCCAACGTAAC	c4p158006341ES	TAATGCTAAATGACACGTTAATGG
chr4	159126223	159126458	158906773	158907008	-	40	235	5	noL1	"COLO1T,COLO1N"	100	434	AluSz				c4p159126340FS	CACTATGATGTAAGCTCTGACCAC	c4p159126340ES	CCTCAGAAAACCCATTTGTAGTAG
chr4	160950940	160951377	160731490	160731927	+	222	437	12	L1PA3	"COLO1T,COLO1N"	665	437	"L1PA3,MIRb"				c4p160951158FS	ACCTGTTCCAGCTTAAACAACTAC	c4p160951158ES	TCATTCTCAGTAAAGTATCGCAAG
chr4	163606758	163607167	163387308	163387717	-	24720	409	38	L1HS	"COLO1T,COLO1N"	76728	409	"L1M4b,L1HS"				c4p163606962FS	CTAGTTTGATTTCACTGTGGTCTG	c4p163606962ES	TCATTCTCAGTAAACTATCGCAAG
chr4	164877729	164877867	164658279	164658417	-	159	138	14	L1HS	"COLO1T,COLO1N"	652	638	"L1HS,AT_rich,(T)n"	LINE:dbRIP	1-Mar		c4p164877798FS	TAGATGACATGAAATTGTATCACG	c4p164877798ES	CAAATGTCCAACAATGATAGACTG
chr4	165135225	165135327	164915775	164915877	+	23	102	3	L1PA4	"COLO1T,COLO1N"	13	151			1-Mar		c4p165135276FS	ATTTGAAGTCAGAAGTTCCAGAAG	c4p165135276ES	GTCTTTAATTACTGCTTGCCTCAG
chr4	166273063	166273511	166053613	166054061	+	326	448	7	noL1	COLO1T	0	0					c4p166273287FS	TATTCTAAGGGACTTTGTTTCTGG	c4p166273287ES	TGTTTCAAAAACAACAACAACAAC
chr4	167588047	167588582	167368597	167369132	-	163620	535	65	L1HS	"COLO1T,COLO1N"	327060	538	"L1HS,L1M5"				c4p167588314FS	GGAAGGAATAACAATATAAAACACG	c4p167588314ES	AAAAACCAAACACCACATATTCTC
chr4	167716550	167716938	167497100	167497488	+	4282	388	21	L1HS	"COLO1T,COLO1N"	4944	395	"(TA)n,L1HS,AT_rich"				c4p167716744FS	GCACTGGTTGTTATTCTATGTGAG	c4p167716744ES	GATGAGTTCATATCCTTTGTAGGG
chr4	167919586	167920131	167683011	167683556	+	2573	545	16	L1HS	"COLO1T,COLO1N"	3709	667	L1HS	LINE:dbRIP	SPOCK3		c4p167919858FS	CCAGAGAAGTTTTTGTCTTTCATC	c4p167919858ES	ACACCGCATATTCTCACTCATAG
chr4	168377512	168377757	168140937	168141182	+	13	245	3	noL1	COLO1T	0	0			SPOCK3		c4p168377634FS	TCAAATTATGTAAAATGGAAAAAGG	c4p168377634ES	AAGCAAAAGTGAGCTGTGATTAAC
chr4	168500848	168501069	168264273	168264494	-	39	221	5	L1PA3	"COLO1T,COLO1N"	104	677	L1PA16				c4p168500958FS	TATGAGAATAGCAAGGGAGAAATC	c4p168500958ES	TAATGCTAGATGACGAGTTAGTGG
chr4	169097513	169097793	168860938	168861218	+	27	280	8	noL1	"COLO1T,COLO1N"	105	139					c4p169097653FS	CTCGGTGACTTTATGTAATGAATG	c4p169097653ES	TACTGTGGTTCTCACTTTCAGAAG
chr4	169607305	169607850	169370730	169371275	+	330	545	24	L1HS	"COLO1T,COLO1N"	1094	633	"L1MEe,L1HS,(A)n,LTR8"		DDX60L		c4p169607577FS	ATCAGATGAGCCAGTTTATAGAGC	c4p169607577ES	ACACCGCATATTCTCACTCATAG
chr4	170517885	170518527	170281310	170281952	-	167393	642	82	noL1	"COLO1T,COLO1N"	677278	643	L1M1	"LINE:Ewing,Iskow"			c4p170518206FS	TTTTGATTTGCTCATTGTTTAGTC	c4p170518206ES	AGAAATGCAATTGACATACTGAAG
chr4	170672238	170673287	170435663	170436712	-	506960	1049	103	L1HS	"COLO1T,COLO1N"	3121833	1049	"L1MD2,L1HS"		NEK1		c4p170672762FS	CGAATTTTATAGGATTGGTTCATC	c4p170672762ES	GAGCTGAAAGAAGAAGTAAACAGG
chr4	171513618	171513943	171277043	171277368	-	173	325	4	noL1	"COLO1T,COLO1N"	476	71	"L1PA2,L1PA5"				c4p171513780FS	TTTTGTAGATTGTGCATATTAGCG	c4p171513780ES	TCAGGGATCTAGAACTGGAAATAC
chr4	172453676	172454160	172217101	172217585	-	148	484	6	L1HS	"COLO1T,COLO1N"	313	647	"L1HS,MER31-int"				c4p172453918FS	CCTGATTTGCTATTACTAATGCTG	c4p172453918ES	TCATTCTCAGTAAACTATCGCAAG
chr4	174272223	174272686	174035648	174036111	+	725	463	16	noL1	"COLO1T,COLO1N"	3391	469	"L1PA13,AluSx"				c4p174272454FS	CTGTATTTTGAGCCTATGTGTGTC	c4p174272454ES	CTCAGTGACATACTCCACAAGAAG
chr4	176452042	176452887	176215046	176215891	+	170	845	6	noL1	"COLO1T,COLO1N"	1163	816	"L1PA3,AT_rich,L3"				c4p176452464FS	CAATTACTAGCTCCAGCTACTTCC	c4p176452464ES	ATCCTCTCACTTAACAAAGCAGTC
chr4	177230795	177231293	176993801	176994299	-	20	498	8	L1PA4	"COLO1T,COLO1N"	168	702	"L2a,L1PA4"		WDR17		c4p177231044FS	TAATTCTGATGCGAAATACTTGAG	c4p177231044ES	AACAATGAGAACACATGGACATAG
chr4	177400029	177400193	177163035	177163199	-	159	164	3	noL1	"COLO1T,COLO1N"	221	164	MLT2F		ASB5		c4p177400111FS	CCCTCATACAACCTTTAGGAGTC	c4p177400111ES	AAATTCCTCAGAAGAACTCCAAG
chr4	178229990	178230463	177992996	177993469	-	135	473	10	L1PA2	"COLO1T,COLO1N"	1120	489	L1PA2				c4p178230226FS	AAATGAGCACAGTTAGGAATCAAC	c4p178230226ES	TCATTCTCAGTAAACTATCGCAAG
chr4	179159180	179159444	178922186	178922450	+	80	264	6	L1PA3	"COLO1T,COLO1N"	663	351	"L1PA3,L1MC4"				c4p179159312FS	TTTTCTCAGTGTGTTTTCTCTCAG	c4p179159312ES	TGGAAATCATCATTCTCAGTAAAC
chr4	180553129	180553359	180316135	180316365	+	18	230	2	L1PA4	"COLO1T,COLO1N"	5	65	"L1MEf,L1PA4"				c4p180553244FS	AACTTGGAATATTATCTCACAGCC	c4p180553244ES	ATGATGAGTTCATGTCCTTTGTAG
chr4	180554090	180554473	180317096	180317479	-	16	383	2	noL1	"COLO1T,COLO1N"	18	385	"AluSz6,L1MEf,AluY"				c4p180554281FS	AATGTTACAACACAACAACAAAGG	c4p180554281ES	CATACCTATTCCTTTGTGAAAACC
chr4	181095494	181095985	180858500	180858991	+	2321	491	21	L1PA2	"COLO1T,COLO1N"	20674	486	"L1PA2,L2"				c4p181095739FS	AGAATGACCTACTGCTTTATCCAG	c4p181095739ES	CCATCATTCTCAGTAAACTATTGC
chr4	182904603	182904968	182667609	182667974	-	15	365	3	noL1	"COLO1T,COLO1N"	9	68	L2a				c4p182904785FS	CTAGACTGCAACCATGTTAGTGAG	c4p182904785ES	ATAAACAAATTTTAAACGCACTTG
chr4	182931736	182932204	182694742	182695210	-	47984	468	55	L1HS	"COLO1T,COLO1N"	131389	666	"L1HS,MIR3"				c4p182931970FS	AGAGTTGAAATGCACCTTAAAGAC	c4p182931970ES	TCATTCTCAGTAAACTATCGCAAG
chr4	183774624	183774899	183537630	183537905	+	48	275	6	L1PA2	"COLO1T,COLO1N"	220	275	"L1PA2,AluYk12"		ODZ3		c4p183774761FS	ATTCTGAATTTTAAGTTCCAAAGC	c4p183774761ES	CATTGTTCAATTACCACCTATGAG
chr4	185764252	185764451	185527258	185527457	+	15	199	2	noL1	"COLO1T,COLO1N"	28	201	L1PA7				c4p185764351FS	GTCAGATTTGTCAAAGATCAGATG	c4p185764351ES	ATATCATACTGAATGGGCAAAAAC
chr4	190301203	190301675	190064209	190064681	+	1093	472	21	L1HS	"COLO1T,COLO1N"	4331	475	"THE1B,L1HS,LTR16E2"	LINE:dbRIP			c4p190301439FS	AACAAAGCCATTCTTCTATGTCTC	c4p190301439ES	TCATTCTCAGTAAACTATCGCAAG
chr4	190896701	190897168	190659707	190660174	+	1470	467	17	noL1	"COLO1T,COLO1N"	5567	495	L2a	"LINE:Ewing,Iskow,Stewart"			c4p190896934FS	AGCCAAAATTTGAAAAAGATAAAG	c4p190896934ES	CTCCAAACCCTTATTCTTAGTCTC
chr4	191081689	191081827	190844695	190844833	+	468	138	3	noL1	"COLO1T,COLO1N"	1473	233	L1M1		BC087857		c4p191081758FS	TTGTAGAATTTGTCAGTGAAAACC	c4p191081758ES	TTATGAGATACAGCAAAACAGTCC
chr5	1698772	1699264	1645772	1646264	+	1763	492	5	noL1	"COLO1T,COLO1N"	5164	492	L1PA5				c5p1699018FS	CAGTTTCAGCTTTCTACATATGGC	c5p1699018ES	GAGACAGAAATTCTTCGCACAC
chr5	2024523	2024909	1971523	1971909	+	2728	386	22	L1HS	"COLO1T,COLO1N"	8148	644	"L1HS,AluSz"	LINE:dbRIP			c5p2024716FS	ATGAACCACGAAAATAGAAAACTC	c5p2024716ES	GATGAGTTCATATCCTTTGTAGGG
chr5	4202300	4202513	4149300	4149513	+	11	213	3	L1PA3	"COLO1T,COLO1N"	6	106	AT_rich				c5p4202406FS	TCTCTAGGCATGTTTTCTATCCTC	c5p4202406ES	TCATTCTCAGTAAATTATCGCAAG
chr5	7110624	7110749	7057624	7057749	+	37	125	7	L1PA2	"COLO1T,COLO1N"	614	166	"L1PA2,HERVH-int"				c5p7110686FS	ATTCATCCTTACCCTACTTTTTGC	c5p7110686ES	CAAATGTCCAACAATGATAGACTG
chr5	7183792	7183927	7130792	7130927	-	94	135	3	noL1	"COLO1T,COLO1N"	279	128	L1PA3				c5p7183859FS	TAGTGATGTACAGATGGGTTTTTG	c5p7183859ES	AAGACAGGTGATTTCTGCTTTTC
chr5	7656375	7656987	7603375	7603987	-	20514	612	32	L1HS	"COLO1T,COLO1N"	59504	911	"L1HS,(T)n"		ADCY2		c5p7656681FS	AGTAGCAAAGTAGAAGTGTCCCAC	c5p7656681ES	TGGGAGATATACCTAATGCTAGATG
chr5	8327848	8327969	8274848	8274969	+	16	121	6	L1PA2	"COLO1T,COLO1N"	17	121	"L1PA2,AluSx3"				c5p8327908FS	TTAAATGTGAGCATTGTAGAAAGG	c5p8327908ES	CAAATGTCCAACAATGATAGACTG
chr5	8802498	8802945	8749498	8749945	+	841	447	7	noL1	"COLO1T,COLO1N"	2821	447		"LINE:dbRIP,Ewing,Stewart"			c5p8802721FS	ATTTTATTGCTGAAATTGATCCAG	c5p8802721ES	AAACACTGAGCTTGGCTTAAATAC
chr5	9315946	9316457	9262946	9263457	+	1110	511	24	L1HS	"COLO1T,COLO1N"	4630	510	"MER1B,(TAAAAA)n,L1HS,AT_rich"		SEMA5A		c5p9316201FS	TAGATAACCTAGATCCCTCACTGC	c5p9316201ES	TCATTCTCAGTAAACTATCGCAAG
chr5	9539205	9539375	9486205	9486375	+	256	170	5	noL1	COLO1T	0	0	L1PA8		SEMA5A		c5p9539290FS	ATCTCTCTTGACTGTCTCCTTGTC	c5p9539290ES	GAAAATGAGAACCTGCTATACACC
chr5	12250045	12250549	12197045	12197549	-	3919	504	26	L1HS	"COLO1T,COLO1N"	18829	504	"L1HS,MER5A"				c5p12250297FS	AAATCTAAATGCAACTATTCAGGG	c5p12250297ES	TCATTCTCAGTAAACTATCGCAAG
chr5	12505733	12505961	12452733	12452961	-	28	228	7	L1HS	"COLO1T,COLO1N"	42	229	"L1HS,AT_rich"				c5p12505847FS	ACTTCCAGTGTCCAGAACTATGAC	c5p12505847ES	TCATTCTCAGTAAACTATCGCAAG
chr5	13475594	13475966	13422594	13422966	+	88	372	14	L1HS	"COLO1T,COLO1N"	117	473	"L1HS,AT_rich,(A)n,ERV3-16A3_I-int"				c5p13475780FS	AAATTCTAGATTGGCTGTTCAAAG	c5p13475780ES	TCATTCTCAGTAAACTATCGCAAG
chr5	13491159	13491539	13438159	13438539	+	222	380	4	L1PA3	"COLO1T,COLO1N"	1739	381	"L1PA3,L2b"				c5p13491349FS	ATTGTTTTTGGATTCTAAAGTTGG	c5p13491349ES	ACACTGCATATTCTCACTCATAGG
chr5	14862409	14863073	14809409	14810073	+	3837	664	37	L1HS	"COLO1T,COLO1N"	6790	664	"AmnSINE1,AluJb,L1HS"		ANKH		c5p14862741FS	CTTCTTCCCTCCTGTAGAGAAAC	c5p14862741ES	TAATGCTAGATGACACGTTAGTGG
chr5	15959207	15959680	15906207	15906680	-	89620	473	23	L1HS	"COLO1T,COLO1N"	216625	521	"L1HS,AT_rich"	"LINE:dbRIP,Ewing"	FBXL7		c5p15959443FS	GAACAGGAAGTGTAACCAACTAGG	c5p15959443ES	TCATTCTCAGTAAACTATCGCAAG
chr5	15966073	15966431	15913073	15913431	-	20	358	5	L1HS	"COLO1T,COLO1N"	48	85	"L1HS,AT_rich"		FBXL7		c5p15966252FS	TCTAGAATTAGGCCCATGTTACTC	c5p15966252ES	TAGCTCACAAATTCAACTTTCAAC
chr5	17443642	17443791	17390642	17390791	+	33	149	3	noL1	"COLO1T,COLO1N"	12	94	AluY				c5p17443716FS	AGAAGGCAATGTACCCTAATGTC	c5p17443716ES	GCCTGTAGTCCCAGCTACTCG
chr5	18107315	18107651	18071558	18071894	+	8764	336	28	noL1	"COLO1T,COLO1N"	18535	605	"L1ME3B,AluSg"				c5p18107483FS	TGGTCATATGTATTGCAACTATCC	c5p18107483ES	TCAATAATTGGCATTTGATTTATG
chr5	19215761	19216391	19180004	19180634	+	290	630	6	noL1	"COLO1T,COLO1N"	7	630	MER5B				c5p19216076FS	TTTATAAATGACTTATGGCTTCCC	c5p19216076ES	AGACCTACAAGTAAGACCAGTTCG
chr5	20679665	20680168	20643908	20644411	-	2582	503	15	L1HS	"COLO1T,COLO1N"	5953	528	"L1HS,AT_rich,L1PREC2,AluY,MIRb"		AK093362		c5p20679916FS	GTAGTCCCAGCTACTCAGGAGG	c5p20679916ES	ACACCGCATATTCTCACTCATAG
chr5	21412494	21412863	21376737	21377106	+	53	369	4	L1PA3	"COLO1T,COLO1N"	110	378	"L1PA3,AT_rich"				c5p21412678FS	TCCCTAAAACATAATTCAGAACAG	c5p21412678ES	TCATTCTCAGTAAACTATCGCAAG
chr5	21888098	21888199	21852341	21852442	-	115	101	2	noL1	COLO1T	0	0			CDH12		c5p21888148FS	ACTTAGATAGAGATGCTGGGAATG	c5p21888148ES	AAAGGTCACTTACTGGATTACAATG
chr5	23106005	23106513	23070248	23070756	+	168	508	7	noL1	"COLO1T,COLO1N"	188	79	"AT_rich,L1MB4"	"LINE:Ewing,Iskow"			c5p23106259FS	TACACTTAGAAGAAAGCCAAACAC	c5p23106259ES	ATTTATTTTTGTGTCTCAACCCAC
chr5	23954530	23954862	23918773	23919105	+	193	332	9	L1PA4	"COLO1T,COLO1N"	874	406	"L1PA15,L1PA4"				c5p23954696FS	TGATAGTAATCCATTGTGGTTTTG	c5p23954696ES	TCATTCTCAGCAAACTATCACAAG
chr5	24394368	24395012	24358611	24359255	-	11	644	2	noL1	"COLO1T,COLO1N"	35	644	"T-rich,AluYf4"				c5p24394690FS	TTATTGTTATTGTTGATGGGATTG	c5p24394690ES	TAGAACTGTGCAAGTGGACAAC
chr5	24406298	24406605	24370541	24370848	-	110	307	12	noL1	"COLO1T,COLO1N"	304	309	"L1HS,AT_rich,(T)n"	LINE:dbRIP			c5p24406451FS	TTTAATGTTTGGTAAGTTTGGATG	c5p24406451ES	GATGAGTTCATATCCTTTGTAGGG
chr5	25674322	25674620	25638565	25638863	-	241	298	7	L1PA2	"COLO1T,COLO1N"	613	298	L1MEg				c5p25674471FS	CAACAATTCCCCTGTTAAATTATG	c5p25674471ES	ATGATGAGTTCATGTCCTTTGTAG
chr5	26128894	26129136	26093137	26093379	+	6461	242	36	noL1	"COLO1T,COLO1N"	17468	388	"GA-rich,(TG)n,L1MC4"	LINE:Ewing			c5p26129015FS	AGTCCTGCTCAAATAATAAGCAAC	c5p26129015ES	CTCTCCTTCGTTAAATTCTGTCTC
chr5	26250534	26251039	26214777	26215282	+	12	505	2	L1PA7	"COLO1T,COLO1N"	21	495	L1PA3				c5p26250786FS	TATAGTTGCTGCTTAAATGCTGTC	c5p26250786ES	TATGTAACAAACCTGCACAATCTG
chr5	28002436	28002646	27966679	27966889	+	262	210	5	L1PA6	"COLO1T,COLO1N"	663	217	"L1M4b,L1PA6"				c5p28002541FS	GTTTGCTTGTTTATTTGTTCAGTG	c5p28002541ES	GAACCCTGATGATAAAGGTAGATG
chr5	28649483	28649829	28613726	28614072	+	10	346	2	L1PA15-16	"COLO1T,COLO1N"	60	348	"L1PA3,L1PA17"				c5p28649656FS	TAGAAGGACCTAAGATTACATGCC	c5p28649656ES	TCATTCTCAGTAAACTATCGCAAG
chr5	28657499	28657609	28621742	28621852	+	10	110	4	noL1	"COLO1T,COLO1N"	46	71	(A)n				c5p28657554FS	TAATGCTCTGTCTCATTTTCTTTG	c5p28657554ES	GGAATGCACCTGAGTAGATTTTAG
chr5	29148655	29149125	29112898	29113368	-	35	470	4	L1PA2	"COLO1T,COLO1N"	758	486	"L1PB1,THE1B"				c5p29148890FS	CCCTGAAGTTCTTTCTTCTACTTG	c5p29148890ES	AATGCTAGATGACAAGTTAGTGGG
chr5	30896803	30897091	30861046	30861334	+	41	288	6	L1PA2	"COLO1T,COLO1N"	82	376	"L1ME3A,AluSx1"				c5p30896947FS	TGTCTTCTGTCTCTTAATGCTTTG	c5p30896947ES	TCATTCTCAGTAAACTATCGCAAG
chr5	31365262	31365433	31329505	31329676	+	76	171	5	noL1	"COLO1T,COLO1N"	205	175	"AT_rich,(A)n"				c5p31365347FS	CACCTTCTAGTGTGTACTGTGGTG	c5p31365347ES	CTTTTGCAAATCAATTTTTGTAAC
chr5	32229916	32230114	32194159	32194357	-	22	198	5	L1PA2	"COLO1T,COLO1N"	46	67	L1PA2				c5p32230015FS	TTAATCTATTTCCTCACTTACCGC	c5p32230015ES	GATAGTTAATTATGTCGCATGATCC
chr5	32857650	32858448	32821893	32822691	-	1197107	798	122	L1HS	"COLO1T,COLO1N"	1284791	477	"L1HS,MER92B,(T)n,LTR81A"				c5p32858049FS	TTCTTAGGTGTAGCCTGAAGAAAC	c5p32858049ES	TAATGCTAGATGACACGTTAGTGG
chr5	33131424	33131831	33095667	33096074	-	132	407	7	L1PA4	"COLO1T,COLO1N"	278	407	"L1PA4,L1PA15-16"				c5p33131627FS	TATGTCTGGTAGAATTCGACTGTG	c5p33131627ES	AAAATGAAGAGTTCATGTCCTTTG
chr5	33668754	33668955	33632997	33633198	-	191	201	4	L1PA17	"COLO1T,COLO1N"	990	682		"LINE:dbRIP,Ewing,Iskow,Stewart"	ADAMTS12		c5p33668854FS	CAAAATGAGTTGAAGAGATCATTG	c5p33668854ES	TTTCTTGTAGGCAGTGTACTTCAG
chr5	33833034	33833248	33797277	33797491	-	498	214	6	noL1	"COLO1T,COLO1N"	1342	362		"LINE:Beck,dbRIP,Ewing,Iskow,Stewart"	ADAMTS12		c5p33833141FS	CTCAGTGATTGTTGATGGATAGAG	c5p33833141ES	TTTTTAAGAAGAAGAAAACACATCAG
chr5	33954636	33954767	33918879	33919010	-	11	131	3	noL1	"COLO1T,COLO1N"	66	133	L1PB1				c5p33954701FS	TCTGATGACTATGTGTCTAGGTGG	c5p33954701ES	ATTAGCAGAGAGAGAGACCTGAAG
chr5	33987968	33988599	33952211	33952842	-	684	631	20	L1HS	"COLO1T,COLO1N"	3658	797	"AluJr,L2c,L1HS"		SLC45A2		c5p33988283FS	TGTTTTCTCCCTCTCTAATATTCC	c5p33988283ES	AGGGATAGCATTGGGAGATATAC
chr5	34189673	34190204	34153916	34154447	+	1527	531	11	noL1	"COLO1T,COLO1N"	13696	531	L1HS	LINE:dbRIP			c5p34189938FS	GATGTAGACAGAGTTTGCATTTTG	c5p34189938ES	TCATTCTCAGTAAACTATCGCAAG
chr5	37496507	37496983	37460750	37461226	+	190	476	15	L1HS	"COLO1T,COLO1N"	218	511	"(TAAAAA)n,L1HS,(A)n"		"DKFZp547K202,WDR70"		c5p37496745FS	AAAATAATAAGCGGTTGTGAAGAG	c5p37496745ES	TCATTCTCAGTAAACTATCGCAAG
chr5	39829603	39829786	39793846	39794029	+	140	183	8	L1PA2	"COLO1T,COLO1N"	365	185					c5p39829694FS	CCTCCTCTTTTTATAAATCCACAG	c5p39829694ES	TCATTCTCAGTAAACTATCGCAAG
chr5	40361424	40361678	40325667	40325921	+	74	254	2	noL1	COLO1T	0	0	MER57A1				c5p40361551FS	TCTCTATTTGAGTCCTTGTGAATG	c5p40361551ES	CTCCAGATATGAAGAATTAGAGGC
chr5	40664870	40665421	40629113	40629664	-	14	551	4	L1PA3	"COLO1T,COLO1N"	36	482	L1PA3				c5p40665145FS	CTGTATTCCCAGAGCTTAGAAAAG	c5p40665145ES	TACCCAAAGGACTATAAATCATGC
chr5	41270567	41270979	41234810	41235222	-	33	412	6	L1PA2	"COLO1T,COLO1N"	94	431	L1PA2		C6		c5p41270773FS	TGAATTAGCACTGAGTGTAGAAGC	c5p41270773ES	TCATTCTCAGTAAACTATCGCAAG
chr5	41438831	41439321	41403074	41403564	-	111367	490	57	L1HS	"COLO1T,COLO1N"	503266	495	"L1HS,L1ME1,L1MC4"		PLCXD3		c5p41439076FS	TCATTAGTAGTAGCCCTTGTCCTG	c5p41439076ES	TCATTCTCAGTAAACTATCGCAAG
chr5	41635823	41636401	41600066	41600644	+	10016	578	23	L1HS	"COLO1T,COLO1N"	61648	588	"HAL1,L1HS,L1MEc"	LINE:dbRIP			c5p41636112FS	TAAATTTTAGCTGGTTTCTTCAGG	c5p41636112ES	TGGGAGATATACCTAATGCTAGATG
chr5	41637774	41638218	41602017	41602461	+	18947	444	35	noL1	"COLO1T,COLO1N"	36076	447	"MER2,(CATA)n,AluY"	"LINE:Ewing,Iskow"			c5p41637996FS	TTACTGATTCTGAAAAATCCTTTAAC	c5p41637996ES	TTACATACACAGTTCATCCTCACC
chr5	42201582	42201760	42165825	42166003	-	14	178	3	L1HS	"COLO1T,COLO1N"	18	280	"L1HS,(T)n,L1ME2"		AK000840		c5p42201671FS	TAGCTGCATCCTACAAATTTTGAC	c5p42201671ES	TCATTCTCAGTAAACTATCGCAAG
chr5	43501835	43502066	43466078	43466309	+	189	231	8	L1PA4	"COLO1T,COLO1N"	659	283	L1MA1		C5orf28		c5p43501950FS	CTTTCCTTTCTGACTGAAGTTCTC	c5p43501950ES	GATGAGTTCATATCCTTTGTAGGG
chr5	44190270	44190804	44154513	44155047	+	3839	534	16	L1HS	"COLO1T,COLO1N"	13981	542	"L1HS,MER61-int"				c5p44190537FS	TTTATTACCCAACTTTAGTCCCAC	c5p44190537ES	TGGGAGATATACCTAATGCTAGATG
chr5	44620773	44621245	44585016	44585488	+	99	472	11	L1PA3	"COLO1T,COLO1N"	230	1166	L1PA3				c5p44621009FS	ATTTGTTATTATTTTGGCAAGGAG	c5p44621009ES	TCATTCTCAGTAAACTATCGCAAG
chr5	45700279	45700499	45664522	45664742	+	19	220	5	L1PA2	"COLO1T,COLO1N"	18	365	"L1PA3,L1PA2"		HCN1		c5p45700389FS	GTGAATAGTGCCACAATAGCATAC	c5p45700389ES	TCATTCTCAGTAAACTATCGCAAG
chr5	46012844	46013391	45977087	45977634	-	15635	547	50	L1HS	"COLO1T,COLO1N"	29262	631	"L1HS,ALR/Alpha"				c5p46013117FS	AATCTGCAAAGAGATATTCAGGAG	c5p46013117ES	ACACTGCATATTCTCACTCATAGG
chr5	46083235	46083345	46047478	46047588	+	82	110	3	L1PA4	"COLO1T,COLO1N"	325	272	"(TAA)n,ALR/Alpha"				c5p46083290FS	GATATTTCATTTTTCACCATAGGC	c5p46083290ES	CAATAGTAAAGACTTGGAACCCAC
chr5	46235016	46235630	46199259	46199873	+	33	614	4	L1PA3	"COLO1T,COLO1N"	162	594	"L1PA3,ALR/Alpha"				c5p46235323FS	CCAGAGTAAAACCTAGACAGAAGC	c5p46235323ES	CGTATGTTTATTGTGGCATTATTC
chr5	46259818	46260089	46224061	46224332	-	98	271	7	L1PA2	"COLO1T,COLO1N"	212	384	"(TTTA)n,ALR/Alpha"				c5p46259953FS	CTGTTTTTGTCCATTCTGTAACTG	c5p46259953ES	TAAAAACCCTTTTTCACTCATAGG
chr5	46405289	46405393	46369532	46369636	-	162	104	4	noL1	"COLO1T,COLO1N"	161	103	ALR/Alpha				c5p46405341FS	GCGTATGGTAGAAAAGGAAGTATC	c5p46405341ES	AAAAAGAGTGTTTCAAAATTGCTC
chr5	49470481	49470749	49434724	49434992	-	32	268	4	noL1	"COLO1T,COLO1N"	191	281	ALR/Alpha				c5p49470615FS	TAACAAAAGAAAGATTCAACTCCG	c5p49470615ES	TCTCAGAAACTTCTTTGTGATCTG
chr5	49475835	49476025	49440078	49440268	-	515	190	5	noL1	"COLO1T,COLO1N"	1349	231	ALR/Alpha				c5p49475930FS	ATAAAAGAAAGATTCAACTCCGTG	c5p49475930ES	AGTGGATATTTGGAGAGATTTGAG
chr5	49555849	49556569	49520092	49520812	+	15	720	4	L1PA3	"COLO1T,COLO1N"	21	731	"L1PA3,ALR/Alpha"				c5p49556209FS	TTGTAGAATCTGCATGTGGTATTG	c5p49556209ES	ATAATAAAGGGAAAGTTTCAACCC
chr5	49600394	49600531	49564637	49564774	+	44	137	8	L1PA2	"COLO1T,COLO1N"	748	336	L1MCb				c5p49600462FS	GCATGATTTCTGATAAGTTCATTG	c5p49600462ES	ATGATGAGTTCATGTCCTTTGTAG
chr5	50588195	50588379	50552438	50552622	+	297	184	2	L1PA2	"COLO1T,COLO1N"	859	184	L1PA2				c5p50588287FS	AAAAGAAAAATCCTTGGGATTAAC	c5p50588287ES	AACTAGAAATACCATTTGACCCAG
chr5	51523765	51524115	51488008	51488358	-	286391	350	30	L1HS	"COLO1T,COLO1N"	623201	351	L1HS				c5p51523940FS	TCACATATTTGTGTGTGTGTGTG	c5p51523940ES	GATGAGTTCATATCCTTTGTAGGG
chr5	52473140	52473380	52437383	52437623	+	103	240	2	noL1	"COLO1T,COLO1N"	207	240	L1PA3				c5p52473260FS	TTTTAGAGTTTCCAGTTTTTCTGC	c5p52473260ES	CATCTCACTAGAGAGTGCCAGAC
chr5	54596637	54596984	54560880	54561227	+	10	347	2	noL1	"COLO1T,COLO1N"	30	347	L1MC5		DHX29		c5p54596810FS	TTTTTGAAGAAACCAGATACATTG	c5p54596810ES	ATTCACTGATTACTTGTGGAGATG
chr5	55534676	55534969	55498919	55499212	-	438	293	11	L1PA4	"COLO1T,COLO1N"	3980	360	"THE1C,L1PA4"		ANKRD55		c5p55534822FS	TTTCTTTGAATGTTAGCATCTCTG	c5p55534822ES	ATGATGAGTTCATGTCCTTTGTAG
chr5	55807212	55807334	55771455	55771577	+	101	122	6	L1PA4	"COLO1T,COLO1N"	331	157	"MER34,L1PA4"				c5p55807273FS	TAGGGATTACGTCAAGTGAAAGAC	c5p55807273ES	TAATTAAATTGACAGACGAACAGG
chr5	59371251	59371361	59335494	59335604	+	16	110	4	L1PA3	"COLO1T,COLO1N"	50	335			PDE4D		c5p59371306FS	GACGCTAATCAAATACAAAAATTG	c5p59371306ES	AAATGAGTTCATGTCCTTTGTAGG
chr5	59823668	59824133	59787911	59788376	+	719	465	12	L1PA2	"COLO1T,COLO1N"	1070	465	"AluJr,L1PA2,L1PA6"		PART1		c5p59823900FS	AGGTATTTCTCCTAATGCTATCCC	c5p59823900ES	TGACTGCTCATTAAAAGAAAATTG
chr5	59952602	59952935	59916845	59917178	+	16	333	2	L1PA4	"COLO1T,COLO1N"	49	333	"AT_rich,L1PA5,L1PA4"		DEPDC1B		c5p59952768FS	CGACATTTACATTAGGTGTGTCTC	c5p59952768ES	AACTAGAAATACCATTTGACCCAG
chr5	60090931	60091257	60055174	60055500	-	36	326	9	L1PA3	"COLO1T,COLO1N"	109	327	L1PA3		ELOVL7		c5p60091094FS	AGTTAAGTATTCTCCCAAAGCCTC	c5p60091094ES	TTGATGAGTTCATGTCCTTTGTAG
chr5	61048986	61049157	61013229	61013400	-	14	171	3	noL1	"COLO1T,COLO1N"	36	171	MLT1G1				c5p61049071FS	AGTCCAGAGTGTTCATAAAGCTG	c5p61049071ES	CTCTGTAACAAATTACCCCAAAAC
chr5	62154911	62155420	62119155	62119664	+	4783	509	39	L1PA2	"COLO1T,COLO1N"	8283	509	"L1PA2,(A)n"				c5p62155165FS	GTGCACATAAGTAAACTATGCCTG	c5p62155165ES	TCATTCTCAGTAAACTATCGCAAG
chr5	63638536	63638765	63602780	63603009	+	22	229	6	L1PA4	"COLO1T,COLO1N"	30	499	"AT_rich,MER117,L1PA4"		RNF180		c5p63638650FS	AGCTTTTTAAGTCTTCTCTGGATG	c5p63638650ES	GTGATGAGTTCATGTCCTTTGTAG
chr5	64830756	64831298	64795000	64795542	-	2237094	542	95	L1HS	"COLO1T,COLO1N"	4620163	736	"AluJr,L1MDa,L1HS"				c5p64831027FS	CAAGATTCCTTCTTTGATGATTTC	c5p64831027ES	TAATGCTAGATGACACGTTAGTGG
chr5	65713939	65714746	65678183	65678990	-	10	807	4	L1PA3	"COLO1T,COLO1N"	147	363	"L1PB2,L1PA3"				c5p65714342FS	TTCACCTAACACATAAGGACTCAC	c5p65714342ES	CAAATGTCCAACAATGATAGACTG
chr5	67053584	67053718	67017828	67017962	-	1220	134	12	L1PA3	"COLO1T,COLO1N"	2695	313	L1PA3				c5p67053651FS	ACTACTCTGGCTTTTCATCATTTC	c5p67053651ES	TTGATGAGTTCATGTCCTTTGTAG
chr5	67117734	67118170	67081978	67082414	+	11	436	6	L1PA3	"COLO1T,COLO1N"	27	456	"L1PA3,AT_rich,L1PA4"				c5p67117952FS	TGATGATAAAAATAACTGCCAATG	c5p67117952ES	TCATTCTCAGTAAACTATCGCAAG
chr5	68298978	68299158	68263222	68263402	-	30	180	6	noL1	"COLO1T,COLO1N"	237	689	AluSp				c5p68299068FS	CACACCTATAATCTCAGCACTTTG	c5p68299068ES	TTAATACAAGGCAATAACTAGCCC
chr5	71185475	71185796	71149719	71150040	+	14	321	2	noL1	"COLO1T,COLO1N"	26	430	"L1PA2,THE1C-int"				c5p71185635FS	GTGACTTTAGAACTGGGTAACAGC	c5p71185635ES	TACACAATAGCAAAGACTTGGAAC
chr5	71630265	71630915	71594509	71595159	+	16	650	2	L1PA16	"COLO1T,COLO1N"	1	65	"(A)n,AluYb9,L1PA16"		MRPS27		c5p71630590FS	AAATATTTTATTGATCCTTTCCCC	c5p71630590ES	GAAACCCCGTCTCTACTAAAAATAC
chr5	73872475	73872701	73836719	73836945	+	12	226	3	noL1	"COLO1T,COLO1N"	16	226					c5p73872588FS	CGTATGAGGTGAGGTATGTTACAG	c5p73872588ES	ATTTTGTGTATAAAAAGAGGCTCC
chr5	74979817	74980172	74944061	74944416	+	38	355	7	L1PA2	"COLO1T,COLO1N"	217	457	L1PA2		AK307154		c5p74979994FS	GAAGTGTGTCCAAGATCAAACAC	c5p74979994ES	ATGATGAGTTCATGTCCTTTGTAG
chr5	76497351	76497828	76461595	76462072	+	14	477	6	noL1	"COLO1T,COLO1N"	32	77	"AluSz6,(A)n"				c5p76497589FS	CTCAAGGAGAAGTATATTGGGTTG	c5p76497589ES	TAGGTCTAAGACAGACAATAGGGC
chr5	76946341	76946611	76910585	76910855	+	748	270	17	L1PA3	"COLO1T,COLO1N"	3277	299	"L1MB8,L1PA3"				c5p76946476FS	CATTTGCACCCAATAAAATAAATG	c5p76946476ES	TCATTCTCAGTAAACTATCGCAAG
chr5	78522336	78522921	78486580	78487165	-	1008	585	2	noL1	"COLO1T,COLO1N"	2160	65	"AT_rich,AluSx,AluY"				c5p78522628FS	ATTCCATCCTAAATTATGTGCATC	c5p78522628ES	TGATTAGCACCAAGTAAAATGTTG
chr5	79054979	79055384	79019223	79019628	+	858	405	5	noL1	"COLO1T,COLO1N"	1129	405	"AluSg4,AluJr,L1MEg"		CMYA5		c5p79055181FS	ATCTTGAACTCCTGAACTGAACTC	c5p79055181ES	TCATAATCTTGCTACAAAAACCTG
chr5	79110002	79110538	79074246	79074782	-	17142	536	31	L1HS	"COLO1T,COLO1N"	39116	1190	"L1HS,(TG)n,(TTTTTA)n,L1MC4a"	LINE:dbRIP	CMYA5		c5p79110270FS	ACAAACAATGCTGCAGTAATAAAC	c5p79110270ES	TAATGCTAGATGACACGTTAGTGG
chr5	80366477	80366592	80330721	80330836	+	74	115	5	L1PA3	"COLO1T,COLO1N"	142	453	"L1PA3,L1PA5"		RASGRF2		c5p80366534FS	TTTTCTGTCCTTGTGATAGTATGC	c5p80366534ES	CAAATGTCCAAGAATGATAGACTG
chr5	80953651	80953972	80917895	80918216	+	904	321	8	L1HS	"COLO1T,COLO1N"	1664	251	L1HS		"SSBP2,DKFZp564C0362"		c5p80953811FS	ACCAAGTTTTGTTGTATCCTCATC	c5p80953811ES	ATGATGAGTTCATGTCCTTTGTAG
chr5	81700303	81700869	81664547	81665113	-	22245	566	39	L1HS	"COLO1T,COLO1N"	98536	733	"L1HS,(T)n,AluSc"				c5p81700586FS	TTTGTATTTTTAGTAGAGACGGGG	c5p81700586ES	ACACCGCATATTCTCACTCATAG
chr5	82651905	82652099	82616149	82616343	+	17	194	3	L1PA2	"COLO1T,COLO1N"	23	197	"Tigger1,L1PA2,AT_rich"		XRCC4		c5p82652002FS	CTAATAATCATCTGGGCCTTTAGC	c5p82652002ES	CCAACAATGATAGTCTGGATTAAG
chr5	83650369	83651104	83614613	83615348	+	25	735	9	L1PA7	"COLO1T,COLO1N"	39	82	"AluYd8,L1PA7"		EDIL3		c5p83650736FS	GAACTAATTTACACTCCCACCAAC	c5p83650736ES	AAAACCTAGTCAATACCATTCAGG
chr5	84275059	84275279	84239303	84239523	-	274	220	5	noL1	"COLO1T,COLO1N"	809	234	"L1MA3,L1ME1"	"LINE:dbRIP,Ewing,Iskow"			c5p84275169FS	AGGATCTCTTCAAATCTTTAACCC	c5p84275169ES	GGAAGACCAAAACACTTTTCATAG
chr5	84689943	84690333	84654187	84654577	-	814267	390	49	L1HS	"COLO1T,COLO1N"	1867670	422	"L1HS,L2"				c5p84690138FS	AGCAAGAAACTGAAAATAGCTTTG	c5p84690138ES	GATGAGTTCATATCCTTTGTAGGG
chr5	85848226	85848764	85812470	85813008	+	2234	538	26	L1HS	"COLO1T,COLO1N"	9960	545	"L1HS,AT_rich,L1P4,AluY"				c5p85848495FS	TGAAACGCTGTCTCTACTAAAAATAC	c5p85848495ES	TCATTCTCAGTAAACTATCGCAAG
chr5	86220341	86220960	86184585	86185204	+	232	619	14	L1PA4	"COLO1T,COLO1N"	902	634	"MLT1N2,LTR67B,(TG)n,L1PA4,MLT2D"				c5p86220650FS	GAAGGCTTCAGTAGAAAGACTGAC	c5p86220650ES	AATGCTAAATGACAAGTTAATGGG
chr5	86916536	86916707	86880780	86880951	-	14	171	2	noL1	COLO1T	0	0	L1PA14				c5p86916621FS	ATTTATGGGTAAAGAGTAAACCCC	c5p86916621ES	TTAAGGAAAGAAGGAAAAAGGAAG
chr5	88385927	88386253	88350171	88350497	-	1270	326	11	noL1	"COLO1T,COLO1N"	1470	376		"LINE:Ewing,Iskow,Stewart"			c5p88386090FS	AACTAGGAAATTTTAGTGAAGGGG	c5p88386090ES	TTTTTAAAGAGGATTGTCTCTTGC
chr5	89486548	89486863	89450792	89451107	+	4832	315	26	noL1	"COLO1T,COLO1N"	14578	304		"LINE:dbRIP,Ewing,Iskow,Stewart"			c5p89486705FS	ATCATTTCTATGGAAAAATGAAGG	c5p89486705ES	GTACCTACTATGTTCCAGACCCTG
chr5	91614400	91614501	91578644	91578745	+	80	101	2	noL1	"COLO1T,COLO1N"	48	135	L1PA5		AK056485		c5p91614450FS	GGTGAATTTCTTTGTCATTATCATC	c5p91614450ES	CATTAACAAGTCAGGAAACAACAG
chr5	91628393	91628533	91592637	91592777	-	32	140	4	L1PA2	"COLO1T,COLO1N"	175	152			AK056485		c5p91628463FS	TATTCCCAGACTATTCTTGCTCTC	c5p91628463ES	CATATACACCATGGAATACTGTGC
chr5	93154277	93154452	93128521	93128696	+	11	175	4	L1PA3	"COLO1T,COLO1N"	141	308	"L1PA3,MIRc"		FAM172A		c5p93154364FS	ACATAGTAAGCCCTTGTTTCTACC	c5p93154364ES	CTCATATTTTAGGAAAGAAGGCAG
chr5	93373294	93373414	93347538	93347658	+	12	120	7	noL1	"COLO1T,COLO1N"	21	75	L2		FAM172A		c5p93373354FS	TATGTTTAGTAGAGACGGGGTTTC	c5p93373354ES	AGAATGTAATCTCTGTGAGGGAAG
chr5	93956290	93956394	93930534	93930638	+	23	104	4	noL1	"COLO1T,COLO1N"	200	106	THE1B-int		C5orf36		c5p93956342FS	TCAGAGATGTATGGAAATGTATGG	c5p93956342ES	TGTAAAAGCCTCAGTTCTTACTCC
chr5	97468482	97468773	97442726	97443017	+	43	291	8	noL1	"COLO1T,COLO1N"	167	310	"AT_rich,(A)n"				c5p97468627FS	TAATGTTCTCTATATCCCCACCTC	c5p97468627ES	GACATCATTGAGATTTAGCAGTTG
chr5	98351910	98352098	98324010	98324198	+	3426	188	35	L1PA3	"COLO1T,COLO1N"	8371	188	"GA-rich,L1PA3"				c5p98352004FS	CCCTGTCTTAAAAGAGAGAGAGAG	c5p98352004ES	TAGACTGGATTAAGAAAATGTGGC
chr5	99056617	99056745	99028718	99028846	+	25	128	7	L1PA2	"COLO1T,COLO1N"	65	425	"L1PA2,(A)n"				c5p99056681FS	AAACTGATTCCAAATTCAATAACC	c5p99056681ES	CAAATGTCCAACAATGATAGACTG
chr5	99225509	99226042	99197610	99198143	+	6851	533	11	L1PA2	"COLO1T,COLO1N"	1147	549	L1PA2				c5p99225775FS	TGCTCTTACAGAACAATAGAAAGC	c5p99225775ES	AATGCTAGATGACAAGTTAGTGGG
chr5	100009465	100010225	99981566	99982326	+	523666	760	108	L1HS	"COLO1T,COLO1N"	986562	756	"LTR71A,L1HS,Arthur1,LTR16A"				c5p100009845FS	AAGACTGTAACCCCATATTACTCG	c5p100009845ES	CTCTCTTTAAGAACAAAGACAGGG
chr5	101500940	101501437	101473041	101473538	+	14320	497	46	L1HS	"COLO1T,COLO1N"	16168	757	"L1HS,(A)n,L1PA4"				c5p101501188FS	AAAGTTTTGATTTAGGATGAATGC	c5p101501188ES	TCATTCTCAGTAAACTATCGCAAG
chr5	101558359	101558909	101530460	101531010	+	22042	550	16	L1HS	"COLO1T,COLO1N"	31113	562	"L1HS,(A)n,L1PA6"				c5p101558634FS	CAAGTGGAAGAAAGGATATCAATG	c5p101558634ES	TAGGGATAGCATTGGGAGATATAC
chr5	102003816	102004657	101975917	101976758	+	16	841	5	L1PA2	"COLO1T,COLO1N"	435	769	"L1PA3,L1PA2,(A)n"				c5p102004236FS	TCTATTCTCTATGTTTCTCCACCC	c5p102004236ES	GTTTACCTAAACACTCAGAGCTGG
chr5	103888157	103888297	103860258	103860398	+	13	140	3	L1HS	"COLO1T,COLO1N"	247	91	"L1HS,AT_rich"	LINE:dbRIP			c5p103888227FS	TAAATAGAAGTATTTTAAGGCAGAATG	c5p103888227ES	CTGCTATAAAGACACATGCACAC
chr5	104876482	104876884	104848583	104848985	-	89	402	6	L1HS	"COLO1T,COLO1N"	1368	408	"L1HS,L2b,X7B_LINE"				c5p104876683FS	AGAAAACATTATAAAATTGCCTGC	c5p104876683ES	TCATTCTCAGTAAACTATCGCAAG
chr5	105277447	105277649	105249548	105249750	-	20	202	5	L1PA6	"COLO1T,COLO1N"	47	74	"AluSg,L1PA6"				c5p105277548FS	TGTAATCATGGGATATGATTTGAG	c5p105277548ES	TCCAATGCTCTATAAAACCTCTTC
chr5	105511395	105511596	105483496	105483697	-	25	201	7	L1HS	"COLO1T,COLO1N"	165	262	"Charlie1a,L1HS"				c5p105511495FS	AACACCACATGTTCTCACTCATAG	c5p105511495ES	AACACAAATGTCCAACAATGATAG
chr5	105788620	105789002	105760721	105761103	-	22	382	5	L1PA2	"COLO1T,COLO1N"	139	386	"L1MA8,L1PA2"				c5p105788811FS	TCTTTGAACTGATTTTGCTGTATC	c5p105788811ES	ATGAAATTGGAAAACATCATTCTC
chr5	107336958	107337459	107309059	107309560	+	11	501	6	noL1	"COLO1T,COLO1N"	6	519	"MER30,Plat_L3"		FBXL17		c5p107337208FS	AGTGTAGTAAAGATCACCCTTTGC	c5p107337208ES	ATTTTAATTTTCTGTAGTCCTGGC
chr5	108628963	108629565	108601064	108601666	+	3402	602	27	L1HS	"COLO1T,COLO1N"	11267	602	L1HS	LINE:dbRIP			c5p108629264FS	ACAATTCATGTCAGTGGTAACAAG	c5p108629264ES	ACACCGCATATTCTCACTCATAG
chr5	108639319	108639943	108611420	108612044	+	10	624	2	noL1	"COLO1T,COLO1N"	10	65	"L1MA8,MLT2C1,MIR,AT_rich"				c5p108639631FS	ATGAAGTTGATTTAAAATTGAGGC	c5p108639631ES	TTTAAGTGTTCTCACCACAAAAAC
chr5	109507765	109508145	109479866	109480246	-	420	380	6	noL1	"COLO1T,COLO1N"	2766	353	"L1MEe,L1PA5"	"LINE:dbRIP,Ewing"			c5p109507955FS	GAACTAGTTTACAGTCCCACCAAC	c5p109507955ES	GCAGTTTTACTGTGATACGTCTTG
chr5	109595458	109595936	109567559	109568037	+	22880	478	31	noL1	"COLO1T,COLO1N"	62869	420	L1MA4A	"LINE:Ewing,Iskow"			c5p109595697FS	ATTGTTGATTTCTCTCCTGTTGAC	c5p109595697ES	TAGGCAAGCTATGGTAATAAAAGG
chr5	110502642	110503161	110474743	110475262	+	7928	519	33	L1HS	"COLO1T,COLO1N"	22961	698	"L1HS,AT_rich,L1PB2"				c5p110502901FS	ACCAATTCTTCTTTAAATGTCTGG	c5p110502901ES	AACCATCATTCTCAGTAAACTATCG
chr5	110671865	110672242	110643966	110644343	+	1111	377	11	L1HS	"COLO1T,COLO1N"	2048	379			CAMK4		c5p110672053FS	AGATTACAGAAGGCACTTTTAACG	c5p110672053ES	TCATTCTCAGTAAACTATCGCAAG
chr5	111393203	111393863	111365304	111365964	-	55	660	9	L1PA8	"COLO1T,COLO1N"	474	78	"L1PA8,AluJb"				c5p111393533FS	ACCTACACTATCTCCAAGGTATGC	c5p111393533ES	CAGAATTCTTAATTTTGAGCCATC
chr5	112113507	112113613	112085608	112085714	-	10	106	2	noL1	"COLO1T,COLO1N"	15	120	AluSz		APC		c5p112113560FS	TTTTTGTATTTTTAGTAGAGGCGG	c5p112113560ES	AAAAAGAATGCTCATCACTAATGC
chr5	112477214	112477552	112449315	112449653	-	361	338	4	noL1	"COLO1T,COLO1N"	501	428	L1MC4	LINE:Ewing	MCC		c5p112477383FS	CACAAACCGAACAAAGTAACATAG	c5p112477383ES	GTAAAACAAACCTCCATAAACCAC
chr5	113410764	113411143	113382865	113383244	+	16	379	2	noL1	COLO1T	0	0	"L1ME2,AluY,AluJr4"				c5p113410953FS	GGAAATTACATCCCAATAAACAAG	c5p113410953ES	GAAAACATAGGGAGACCCTGTC
chr5	113520287	113520450	113492388	113492551	-	92	163	5	L1PA4	"COLO1T,COLO1N"	265	429	L1PA13				c5p113520368FS	CTAGCTTTGTTCTTTTTACTTGGC	c5p113520368ES	TGAACAATGAGAACATAAGGACAC
chr5	116286097	116286642	116258198	116258743	-	14	545	3	noL1	"COLO1T,COLO1N"	30	546	"MADE1,(T)n"				c5p116286369FS	TACTCAAAATCAATCCTCAATCAG	c5p116286369ES	TAAATGTTAAGGATGGGTCAAATC
chr5	117294119	117294404	117266220	117266505	-	19	285	4	L1PA2	"COLO1T,COLO1N"	125	284	"L1PA2,AluSx"				c5p117294261FS	TCCAAAGAGGTCTTCTAATTTCAC	c5p117294261ES	TCATTCTCAGTAAACTATCGCAAG
chr5	118228065	118228290	118200166	118200391	+	30	225	11	L1PA3	"COLO1T,COLO1N"	164	238	"L1PA3,MER67C"		DTWD2		c5p118228177FS	TTATATGCTCTGTGTGTGTGTTTG	c5p118228177ES	CAAATGTCCAACAATGATAGACTG
chr5	118808720	118808949	118780821	118781050	+	11	229	4	L1PA6	"COLO1T,COLO1N"	19	315	"L1MEd,L1PA6"				c5p118808834FS	ATCCATTCTATTTGGAACTCTCTG	c5p118808834ES	CACAATAACAAAGACTTGGAAGC
chr5	118969013	118969355	118941114	118941456	+	7107	342	22	L1HS	"COLO1T,COLO1N"	17309	657	"L1HS,L1PA4"				c5p118969184FS	ATTACTCCCTTTTAACAACAGCAG	c5p118969184ES	GATGAGTTCATATCCTTTGTAGGG
chr5	119047927	119048440	119020028	119020541	-	2946	513	26	L1HS	"COLO1T,COLO1N"	6491	513	"THE1C,L1HS,AT_rich,THE1C-int"				c5p119048183FS	CAGGTGAATTTGTCTTAAAGATCC	c5p119048183ES	TCATTCTCAGTAAACTATCGCAAG
chr5	120018961	120019378	119991062	119991479	-	44	417	2	noL1	"COLO1T,COLO1N"	2313	426	AT_rich		PRR16		c5p120019169FS	ATATTTCTGATTTCCAGTCTCCAC	c5p120019169ES	GTGATAGTGATTCAAGGGATCTTC
chr5	120699698	120699968	120671799	120672069	+	699	270	11	noL1	"COLO1T,COLO1N"	1256	194	L1PA8A				c5p120699833FS	TTTAGCATCAAGGCTAATAACTCC	c5p120699833ES	TTGGTATACACGACAAAATGTAGG
chr5	120834735	120835323	120806836	120807424	-	34	588	4	L1PA3	"COLO1T,COLO1N"	103	605	"L1PA3,L1MEc"				c5p120835029FS	ATGTTTTTCTTTTGATATTCGAGC	c5p120835029ES	CATATGGTAAAACTCCAGAAGTCC
chr5	121031955	121032254	121004056	121004355	+	105	299	9	L1HS	"COLO1T,COLO1N"	298	306	"L1HS,(A)n,LTR26"				c5p121032104FS	ACTATGAAATGTTTTCCCTTTGAG	c5p121032104ES	TCATTCTCAGTAAACTATCGCAAG
chr5	121033679	121034029	121005780	121006130	-	859	350	18	L1HS	"COLO1T,COLO1N"	2287	423	"T-rich,L1HS"				c5p121033854FS	AAATAAAATAGGAAGGAATCCAAAC	c5p121033854ES	TGCTTTTTAAAATTCATTGTTCTG
chr5	121608470	121608763	121580571	121580864	+	551	293	35	L1HS	"COLO1T,COLO1N"	1729	245	"L1MA9,L1HS,AT_rich,(A)n"				c5p121608616FS	TTTTATATTTAAATTTTGGGCTGG	c5p121608616ES	TCATTCTCAGTAAACTATCGCAAG
chr5	121875257	121875396	121847358	121847497	+	13	139	2	noL1	"COLO1T,COLO1N"	95	139	L1PA3				c5p121875326FS	TACCATTCCTTCTGAAACTATTCC	c5p121875326ES	GTTCTTCCATTTGTTTGTATCCTC
chr5	123040882	123041120	123012983	123013221	-	15	238	3	noL1	"COLO1T,COLO1N"	48	238	L1PA4				c5p123041001FS	CCAGTATTTTATTGAGGATTTTCG	c5p123041001ES	ATGAAGGCAGAAATAAAGATGTTC
chr5	123530256	123530614	123502357	123502715	-	180	358	10	noL1	"COLO1T,COLO1N"	275	360	L1MEf				c5p123530435FS	GGGGCTTATAGATAAGTCAAAATG	c5p123530435ES	AATAAATTCCTTCTTCCAGTGATG
chr5	124935116	124935320	124907217	124907421	+	779	204	37	L1HS	"COLO1T,COLO1N"	2066	257	"L1HS,L1PA4"				c5p124935218FS	GAACTAGTTTACAGTCCCACCAAC	c5p124935218ES	TTAGACCTAAAACCATACAAACCC
chr5	125067943	125068300	125040044	125040401	+	4700	357	42	noL1	"COLO1T,COLO1N"	10110	413	L1M4c	"LINE:dbRIP,Ewing,Iskow"			c5p125068121FS	TTTCTTGTTTCTTCCAAGATTCTC	c5p125068121ES	AGGGACAATTGAGAAAAAGTACAC
chr5	125660201	125660511	125632302	125632612	+	87	310	9	L1PA4	"COLO1T,COLO1N"	703	372	"L1MCc,L1PA4,MER58A"				c5p125660356FS	GGAGATCTCTCTTCATTAACTTGC	c5p125660356ES	AACACCACATGTTCTCACTCATAG
chr5	126509987	126510306	126482088	126482407	+	209	319	3	L1PA4	"COLO1T,COLO1N"	927	733	"L1PA5,L1PA4"				c5p126510146FS	TTATTTTACCTCAATAAAGCTGGG	c5p126510146ES	ATGATGAGTTCATGTCCTTTGTAG
chr5	128909979	128910349	128882080	128882450	+	17	370	3	L1PA2	"COLO1T,COLO1N"	70	412	"L1MEd,L1PA2"		ADAMTS19		c5p128910164FS	TCCTGAAAAAGGCAAGAATATAAC	c5p128910164ES	TCATTCTCAGTAAACTATCGCAAG
chr5	131251034	131251338	131223135	131223439	-	151	304	8	L1PA4	"COLO1T,COLO1N"	681	697	"L1PA4,L1PA6"		ACSL6		c5p131251186FS	TATCATTGATGGACATTTAGGTTG	c5p131251186ES	ATGATGAGTTCATGTCCTTTGTAG
chr5	132290119	132290369	132262220	132262470	-	22	250	7	noL1	"COLO1T,COLO1N"	58	250	AluJr		AFF4	AFF4.L	c5p132290244FS	AAAAGACTTGCAAAGGTACTTAGG	c5p132290244ES	TTCCTATTCTAGTGGGAGACAGAC
chr5	132473332	132473437	132445433	132445538	+	118	105	26	noL1	"COLO1T,COLO1N"	296	106	"SVA_F,(A)n"				c5p132473384FS	ATTTACACCCTCCTTTATCTTTCC	c5p132473384ES	GTGTCTGTGTAGAAAGAAGCAGAC
chr5	132952830	132953355	132924931	132925456	+	18919	525	54	L1HS	"COLO1T,COLO1N"	70412	525	L1HS	LINE:dbRIP	FSTL4		c5p132953092FS	GATCTCCCATATAGTAAGTGGTGG	c5p132953092ES	TCATTCTCAGTAAACTATCGCAAG
chr5	132961981	132962251	132934082	132934352	+	1521	270	8	noL1	"COLO1T,COLO1N"	6194	621	MER5A1	"LINE:dbRIP,Ewing,Iskow,Stewart"	FSTL4		c5p132962116FS	TAAATAAAAGGAACTCCCTCTTCC	c5p132962116ES	GCTAGTCTCATCAAGCTATTTTCC
chr5	133920010	133921027	133892111	133893128	-	466174	1017	133	L1HS	"COLO1T,COLO1N"	1372296	1029	"(CA)n,L1HS,MIR,(T)n"		"PHF15,FLJ00195"		c5p133920518FS	ATCACACAACACATACACACACAC	c5p133920518ES	ATCTAATAAAGAGCATGGGTTCTG
chr5	135774997	135775505	135747098	135747606	+	1586	508	34	L1HS	"COLO1T,COLO1N"	12554	574	"AluSz6,L1HS,AT_rich,L2c"	LINE:dbRIP			c5p135775251FS	CTAATCTTAATGGAAGAGGCAGTC	c5p135775251ES	ACACCGCATATTCTCACTCATAG
chr5	137042320	137042655	137014421	137014756	-	202	335	8	noL1	"COLO1T,COLO1N"	461	342	L1MC4	"LINE:dbRIP,Ewing,Stewart"	"KIAA1129,KLHL3"		c5p137042487FS	TTGCCATTTATGATTATGTTTTTG	c5p137042487ES	ACTGCTTTTTCTATCTGCTGTTTC
chr5	138448331	138448899	138420432	138421000	+	87739	568	75	L1HS	"COLO1T,COLO1N"	349438	568	"L1ME4a,L1HS,AT_rich"		SIL1		c5p138448615FS	ACCATATTAGTCTTTCAAAGCCAC	c5p138448615ES	AATATCACACTCTGGGAACTGTG
chr5	138945680	138946025	138965496	138965841	+	48	345	5	noL1	"COLO1T,COLO1N"	122	347	"AT_rich,AluSc"		UBE2D2		c5p138945852FS	AAACCAGATCTACACTTGAAGAGG	c5p138945852ES	GTATTTGAGCACTAATTCTGGTTG
chr5	139190107	139190668	139209923	139210484	-	17	561	10	noL1	"COLO1T,COLO1N"	18	561	"AluJb,L1MB5,(TTTC)n"		PSD2		c5p139190387FS	CTTTTTGGCCATTTGTATATTTTC	c5p139190387ES	AAATTGACAAAACCAAAAGAAGAC
chr5	141463325	141463766	141483141	141483582	-	33	441	3	noL1	"COLO1T,COLO1N"	107	73	"AluSx1,MER58B,AluSc"				c5p141463545FS	TCCTATGTTCAAGTGATCCTACTG	c5p141463545ES	GTTCTTGGCTTACCACAAACTTC
chr5	143720515	143720696	143740322	143740503	-	13	181	3	L1PA7	"COLO1T,COLO1N"	44	164	"L1PA3,L1PA7"		KCTD16		c5p143720605FS	TTTGATTTTCTGTTCCTGTGTTAG	c5p143720605ES	TCATCATTCTCAGTAAACTATCGC
chr5	143910222	143910859	143930029	143930666	-	10126	637	36	L1HS	"COLO1T,COLO1N"	34232	635	"L1HS,AT_rich,L1MA5"				c5p143910540FS	TAAACTAGTGGGGAAATTTTTCAG	c5p143910540ES	TGGGAGATATACCTAATGCTAGATG
chr5	144252719	144252993	144272526	144272800	+	27	274	2	L1PA2	COLO1T	0	0	"L1MA1,L1PA2"				c5p144252856FS	TTAGCATTTCTTATAGGATGGGTC	c5p144252856ES	GATGAGTTAATGTCCTTTGTAGGG
chr5	144310962	144311181	144330769	144330988	-	905	219	8	noL1	"COLO1T,COLO1N"	1144	413		"LINE:Ewing,Stewart"			c5p144311071FS	TGCAGTGACAAAATATAATCCATC	c5p144311071ES	TTTCTGCACTGCTCAAGTTAATAC
chr5	144453776	144454308	144473583	144474115	+	440	532	27	L1HS	"COLO1T,COLO1N"	1217	726	"L1HS,L1MEf"				c5p144454042FS	AATAGTTGTGTGTGTGTGTGTGTG	c5p144454042ES	TCATTCTCAGTAAACTATCGCAAG
chr5	144788498	144788616	144808305	144808423	+	241	118	5	L1PA5	"COLO1T,COLO1N"	872	196	L2a				c5p144788557FS	TGCTCTTAATGTTTTCACACAGTC	c5p144788557ES	TTCCAGATTACCTCACCTAGTCTC
chr5	145470886	145471058	145490693	145490865	+	12	172	2	L1PA2	"COLO1T,COLO1N"	137	362	"AluSx,L1M5"				c5p145470972FS	CTGTATGTGTCCATTAGGTCAGAG	c5p145470972ES	AAATGAATGGAAAAGATAGTCTGC
chr5	145975199	145975742	145995006	145995549	+	9035	543	35	L1HS	"COLO1T,COLO1N"	30155	543	"L1HS,L1MA2"		PPP2R2B		c5p145975470FS	TATGTCTGTTTTTATGCCAGTACC	c5p145975470ES	TCATTCTCAGTAAACTATCGCAAG
chr5	146204072	146204644	146223879	146224451	+	3308	572	32	L1HS	"COLO1T,COLO1N"	7137	1000	L1HS		PPP2R2B		c5p146204358FS	TATGCAAAGAATCAAAAAGTGAAC	c5p146204358ES	TAATGCTAGATGACACGTTAGTGG
chr5	146293140	146293478	146312947	146313285	-	27	338	5	L1PA2	"COLO1T,COLO1N"	143	353	L1PA2		PPP2R2B		c5p146293309FS	TGTATTCAACCTTGGAATTGTAAC	c5p146293309ES	GATGAGTTCATGTCCTTTGTAGTG
chr5	147075587	147075883	147095394	147095690	-	18	296	3	L1PA2	"COLO1T,COLO1N"	31	69	L1PA2		JAKMIP2		c5p147075735FS	ATAAAAACAAAATTTAAAGCAGCC	c5p147075735ES	AACTAGAAATACCATTTGACCCAG
chr5	147317835	147318346	147337642	147338153	-	14829	511	31	L1HS	"COLO1T,COLO1N"	37533	892	"T-rich,L1HS,MIRc"	"LINE:dbRIP,Ewing"			c5p147318090FS	AGTTTAAATATTTTTGGCAAGCTG	c5p147318090ES	GGGAGATATACCTAATGCAAGATG
chr5	150788697	150788999	150808504	150808806	-	85	302	10	L1PA4	"COLO1T,COLO1N"	322	330	"AT_rich,L1PA4,MIRb"				c5p150788848FS	ATCCTGGAGACAAGTGATAAAGAG	c5p150788848ES	GCAAACACTGTTATGTTCTCACTC
chr5	151296033	151296151	151315840	151315958	-	16	118	3	L1PA2	"COLO1T,COLO1N"	32	95	(TTTTTA)n				c5p151296092FS	TTGTTGTTATCTTGCACTTTATCC	c5p151296092ES	AGAGTAATTTGATTGTCTGAAGCC
chr5	151442576	151443061	151462383	151462868	+	3234	485	27	L1HS	"COLO1T,COLO1N"	7056	494	"L1HS,L1MB7"	LINE:dbRIP	AK001582		c5p151442818FS	AGCTCATTCATTCACAGATAAAGC	c5p151442818ES	TCATTCTCAGTAAACTATCGCAAG
chr5	151456561	151456939	151476368	151476746	+	24259	378	30	L1HS	"COLO1T,COLO1N"	80752	476	MLT1K	LINE:dbRIP	AK001582		c5p151456750FS	CAATTTTCATAGCATTCTTGTCTG	c5p151456750ES	TAATGGCTTCTCTATTTTGGAATC
chr5	152245568	152246255	152265375	152266062	-	11	687	6	L1HS	"COLO1T,COLO1N"	392	696	"L1MC,L1HS,MIR,L1M6"		AK123816		c5p152245911FS	CATTCATATCCCTCCAACTTTATC	c5p152245911ES	TGGGAGATATACCTAATGCTAGATG
chr5	152430333	152430804	152450140	152450611	-	379	471	15	L1HS	"COLO1T,COLO1N"	1696	473	"AluJb,L1MD1,AT_rich,L1HS"				c5p152430568FS	GGCACAGTAGTCACACTTGTAATC	c5p152430568ES	TCTTAAGAACAAAAAGCCAAACAC
chr5	154365891	154366300	154385698	154386107	-	25	409	2	L1PA7	"COLO1T,COLO1N"	22	409	"AluSp,L1PA7"				c5p154366095FS	TATTAAAACTATCTTGGGGTCAGG	c5p154366095ES	GAAATCCCATCTCTACTAAAAACAC
chr5	155050743	155051091	155070550	155070898	-	583	348	5	L1PA2	"COLO1T,COLO1N"	2976	350	"L1PA2,L1M5"				c5p155050917FS	GTTCAAATGTACCAGGTTCTATCC	c5p155050917ES	AAGAGGGCTTAAGCTAGTTTTCTC
chr5	155266264	155266491	155333686	155333913	-	1667	227	6	noL1	"COLO1T,COLO1N"	2454	529	Tigger1	"LINE:Ewing,Iskow"	SGCD		c5p155266377FS	GACACAATCATACTCACACTAGGC	c5p155266377ES	ATTTCTAGAGCACAGGCAGAGTAG
chr5	155421144	155421768	155488566	155489190	-	466	624	9	L1HS	"COLO1T,COLO1N"	3260	624	L1HS	LINE:dbRIP	SGCD		c5p155421456FS	GTCTAATTCCTATAGGCTCCCTTC	c5p155421456ES	TCATTCTCAGTAAACTATCGCAAG
chr5	155503207	155503395	155570629	155570817	-	55	188	8	L1PA4	"COLO1T,COLO1N"	259	382	"MSTA-int,L1PA4"		SGCD		c5p155503301FS	AGAGAACCTCTACTAGGGCAGTG	c5p155503301ES	ACACATGGACACGTATGTTTATTG
chr5	155646004	155646547	155713426	155713969	+	13	543	2	L1PA4	"COLO1T,COLO1N"	43	557	"L2a,L1PA4"		SGCD		c5p155646275FS	CACTGAGTGTGCTATTTGTTTACC	c5p155646275ES	AACTAGAAATACCATTTGACCCAG
chr5	156387781	156387957	156455203	156455379	+	11	176	3	noL1	"COLO1T,COLO1N"	202	461	"FLAM_C,(A)n"				c5p156387869FS	AACCAAGAAGATCAGCAATAAAAG	c5p156387869ES	AACAAAAACAAAAAGTTTCCTCTG
chr5	157799295	157800128	157866717	157867550	-	909	833	16	noL1	"COLO1T,COLO1N"	5170	953	L1PA6	LINE:Ewing			c5p157799711FS	TAGATTCTGGATATTAGCCCTTTG	c5p157799711ES	TACCTAGGAATCCAACTTACAAGG
chr5	159170489	159170675	159237911	159238097	+	135	186	3	L1PA5	"COLO1T,COLO1N"	137	186	L1PA5				c5p159170582FS	GAACACAAACATTCTGACTGTAGC	c5p159170582ES	TAGAAGTCTTACTTGGAACCAACC
chr5	159223430	159223577	159290852	159290999	-	519	147	6	noL1	"COLO1T,COLO1N"	4928	532	AluSz	LINE:Ewing			c5p159223503FS	TTACTGGTTCCATTTTACAGATTG	c5p159223503ES	TGAAAAGTAAGGAGTCAAGGAGTC
chr5	159283403	159283774	159350825	159351196	-	14659	371	17	noL1	"COLO1T,COLO1N"	28950	458	"Charlie18a,MIRc,MER5A"	"LINE:Ewing,Iskow"	ADRA1B		c5p159283588FS	AGTAGATGGAGGTACCATTTGTTG	c5p159283588ES	AATTTCTGAAAGGGATTGACATAG
chr5	159318794	159319421	159386216	159386843	+	25	627	7	noL1	COLO1T	0	0	"L2c,L2b,AT_rich"		ADRA1B		c5p159319107FS	AGAGTTATGATCGAAACGCTAATC	c5p159319107ES	TACAGTTCCCAAAGAGTTAAGAGG
chr5	159952413	159952736	160019835	160020158	+	47	323	2	noL1	"COLO1T,COLO1N"	61	323	L1PA3		ATP10B		c5p159952574FS	TGGTTTTATCTACTTTTGGTCTTTG	c5p159952574ES	CTAGTCAAAGAAAGGGGTGACAG
chr5	160068732	160069241	160136154	160136663	-	394	509	7	L1HS	"COLO1T,COLO1N"	3112	450	"L1HS,L1M5"		ATP10B		c5p160068986FS	GCAAATCAGTACAGACAGACAGAC	c5p160068986ES	TCATTCTCAGTAAACTATCGCAAG
chr5	161144048	161144715	161211470	161212137	+	51	667	10	L1PA4	"COLO1T,COLO1N"	239	495	"L2b,L1PA4"				c5p161144381FS	TTTAATTCCTGAGAATTTCCACTC	c5p161144381ES	TACTATGCAGCCATAAAAATGATG
chr5	162752429	162753019	162819851	162820441	+	520	590	10	L1PA16	"COLO1T,COLO1N"	3756	597	"(CA)n,L1PA16"				c5p162752724FS	TAGGGGTTTAGTTTCATTCTTCTG	c5p162752724ES	TACAAGGAGAACTACAAAGCACTG
chr5	164286726	164287017	164354148	164354439	-	89	291	8	L1PA3	"COLO1T,COLO1N"	756	473	"L1PA3,L1PA7"				c5p164286871FS	GTCTTAATTCTTTATCCAGCTTGC	c5p164286871ES	TCATCATTCTCAGTAAACTATCGC
chr5	164427379	164427634	164494801	164495056	-	313	255	7	L1PA11	"COLO1T,COLO1N"	2127	382	Tigger14a	LINE:Stewart			c5p164427506FS	ATACAGCTTTCTCATCCTATGGAC	c5p164427506ES	GTACCCTGGGACTTAAAATAAAAG
chr5	165432969	165433725	165500391	165501147	+	12	756	2	noL1	"COLO1T,COLO1N"	4	69	"(TA)n,(A)n,AluSx"				c5p165433347FS	ATCTCAGGAATCACTGGAAAAC	c5p165433347ES	CAGAGCAAGACTCTGTATCAAAAG
chr5	165781085	165781607	165848507	165849029	+	210124	522	31	L1HS	"COLO1T,COLO1N"	1089675	539	L1HS	LINE:dbRIP			c5p165781346FS	CAATATAAAAATGTCTGTGCCAAG	c5p165781346ES	CCATCATTCTCAGTAAACTATTGC
chr5	165976924	165977270	166044346	166044692	+	3759	346	39	noL1	"COLO1T,COLO1N"	1	65	L2a				c5p165977097FS	GTTAGATCAATCACACTATTCCCC	c5p165977097ES	TGTTCTAGACGTAGGTTCAATGTG
chr5	166326000	166326407	166393422	166393829	-	7451	407	21	L1HS	"COLO1T,COLO1N"	23036	779	"L1HS,AT_rich"	LINE:dbRIP			c5p166326203FS	AACCATGGACAAAGGAAATTATAG	c5p166326203ES	TCATTCTCAGTAAACTATCGCAAG
chr5	167141765	167141940	167209187	167209362	+	16	175	3	noL1	"COLO1T,COLO1N"	22	65	AluSp		"ODZ2,KIAA1127"		c5p167141852FS	AGCTACTAATTCCTTGGTGAAAAG	c5p167141852ES	AAACATACAAAACTTAGCTGGGTG
chr5	167503463	167504046	167570885	167571468	-	91	583	9	L1PA2	"COLO1T,COLO1N"	324	295	"L1PA2,AluSp"		"ODZ2,CR607597"		c5p167503754FS	AATAATTGTCTGGTTTCCTCAAAG	c5p167503754ES	CAAATGTCCAACAATGATAGACTG
chr5	172640796	172641196	172708190	172708590	-	74	400	10	L1HS	"COLO1T,COLO1N"	1503	399	"L1HS,AluSc"				c5p172640996FS	GAAACCCCGTCTCTACTAAAAATAC	c5p172640996ES	TATGTGCATCTTTGCAGACTTAAC
chr5	172761905	172762457	172829299	172829851	-	9115	552	45	L1HS	"COLO1T,COLO1N"	40656	548	L1HS				c5p172762181FS	CCTTGCAATAGTTTACAGAGAATG	c5p172762181ES	TGGGAGATATACCTAATGCTAGATG
chr5	173899930	173900453	173967324	173967847	+	145	523	14	L1PA2	"COLO1T,COLO1N"	778	527	"L1MB2,L1PA2"				c5p173900191FS	ATCTCCAGAACTCTTTTCATTTTG	c5p173900191ES	ACACCGCATATTCTCACTCATAG
chr5	174498553	174498710	174565947	174566104	+	32	157	5	L1PA3	"COLO1T,COLO1N"	264	428	L1PA3				c5p174498631FS	TTCTTTCGTATCTCCAAATCTTTC	c5p174498631ES	ATTCAGTATGATATTGGCTGTGG
chr5	176612138	176612431	176679532	176679825	-	20	293	3	noL1	"COLO1T,COLO1N"	9	330	AluJr		NSD1		c5p176612284FS	TAGGTAAAAGGCATAGGCAGTAAC	c5p176612284ES	TCACTCCAGAACCTCCTTAGTATC
chr5	177068685	177069338	177136079	177136732	+	10	653	4	noL1	"COLO1T,COLO1N"	13	655	"AluSq,AluSx3,AluSc"				c5p177069011FS	ACCTGTCACTATAAAAATTAGCCG	c5p177069011ES	AAACCCCGTCTCTACTAAAAACAC
chr5	177137832	177138158	177205226	177205552	+	550	326	16	L1HS	"COLO1T,COLO1N"	922	326	"AluJb,L1HS"		FAM153A		c5p177137995FS	AGCTGGGATTGTAGCTATGTGTAG	c5p177137995ES	GATGAGTTCATATCCTTTGTAGGG
chr5	179732095	179732504	179799489	179799898	+	83	409	7	noL1	"COLO1T,COLO1N"	41	950	"AluSc,L1M5"				c5p179732299FS	TTTTTGTATTTTTAGTAGGACGGG	c5p179732299ES	CTCCATACCTGGAACCCTCTC
chr6	2362330	2363064	2417331	2418065	-	24563	734	43	L1HS	"COLO1T,COLO1N"	197139	734	"Charlie1a,L1HS,MLT1C"	LINE:dbRIP	AJ420566		c6p2362697FS	ATGATTATAAAGGGATTGCTCAAC	c6p2362697ES	GAGGGATAGCATTGGGAGATATAC
chr6	2746289	2746813	2801290	2801814	-	3265	524	34	L1HS	"COLO1T,COLO1N"	5894	665	"MER70-int,L1HS"				c6p2746551FS	CTTGACAGCTATGAGTGAGAAGTG	c6p2746551ES	TTCTCAGTAAACTATCGCAAGAAC
chr6	4645556	4645743	4700557	4700744	+	14	187	4	L1PA4	"COLO1T,COLO1N"	25	152	"L1ME3D,L1PA4"				c6p4645649FS	TATCCTTGAAGCCTCCTGTATAAC	c6p4645649ES	CGTATGTTTATTGTGGCACTACTC
chr6	6140958	6141113	6195959	6196114	+	12	155	2	noL1	"COLO1T,COLO1N"	61	66			F13A1	F13A1.5	c6p6141035FS	CAACATTTCCAACATTTCAGATAC	c6p6141035ES	TGTGTATGTGGATTTTGTCTTACC
chr6	7700462	7700593	7755463	7755594	-	346	131	7	noL1	"COLO1T,COLO1N"	1150	260	L1MEc		BMP6		c6p7700527FS	TTTGTATTTTTAGTAGAGACCGGG	c6p7700527ES	TTTCAGATAAATAAAAGCTGAGGG
chr6	8715499	8715781	8770500	8770782	-	45	282	7	L1PA2	"COLO1T,COLO1N"	55	543	L1PA2				c6p8715640FS	GTCACTTTTCTCATCTGTGAGTTG	c6p8715640ES	TCATTCTCAGTAAACTATCGCAAG
chr6	10442582	10442695	10334596	10334709	+	21	113	4	L1HS	"COLO1T,COLO1N"	21	187	A-rich				c6p10442638FS	GAAATGGAGTTTCACTCTTGTTG	c6p10442638ES	CTGTAATAGACGCACAATAAATGG
chr6	12263248	12263427	12155262	12155441	-	70	179	2	L1PA8	"COLO1T,COLO1N"	357	329	L1MEc		HIVEP1		c6p12263337FS	CATTAGGACAAATACCTAATGCATAC	c6p12263337ES	CAAACTAATGCAGGAAGAGAAAAC
chr6	12729778	12730080	12621792	12622094	-	34	302	5	noL1	"COLO1T,COLO1N"	224	299	"L1PA4,THE1D"				c6p12729929FS	ACTGGCCACTAGAGATAGAATGAC	c6p12729929ES	TTAAAATCTATGCACAATACCTGG
chr6	13299048	13299579	13191069	13191600	+	128	531	7	noL1	"COLO1T,COLO1N"	299	623	MER74B	"LINE:Beck,Ewing,Iskow,Stewart"	PHACTR1		c6p13299313FS	ACATTTGTATAGCTTAGAGCCTGC	c6p13299313ES	TTACTGACACTTCAGCAAAGAAAG
chr6	13555821	13555991	13447842	13448012	+	16	170	4	noL1	"COLO1T,COLO1N"	48	69	AluSx1		GFOD1		c6p13555906FS	CAGACCTTTATAACAAGCATGGTC	c6p13555906ES	TTAAGGTTGTAAAGGAAAATCTGC
chr6	13611028	13611387	13503049	13503408	+	1641	359	11	noL1	"COLO1T,COLO1N"	7359	361	MLT2B4	"LINE:Beck,dbRIP,Ewing,Iskow,Stewart"			c6p13611207FS	ATTGCTCTTGTTACTAAAGATGGC	c6p13611207ES	AAACAAATTGGAAGAACTCATAGG
chr6	15628850	15629299	15520871	15521320	+	11	449	3	noL1	"COLO1T,COLO1N"	39	449	"(CA)n,(A)n"		JARID2	JARID2.L	c6p15629074FS	TGCATTTTCACATTCAAAAATAAC	c6p15629074ES	CTAGATACTGCAGTCAGATTTTGG
chr6	17543853	17544410	17435874	17436431	+	346	557	15	L1HS	"COLO1T,COLO1N"	1360	557	"(TTCC)n,L1HS,(A)n,AluSz,L1MC4a"		"DKFZp686D0714,CAP2"		c6p17544131FS	CAACATGGTAAAACCTTGTCTCTAC	c6p17544131ES	ACACCGCATATTCTCACTCATAG
chr6	17904389	17904818	17796410	17796839	-	12	429	3	noL1	"COLO1T,COLO1N"	49	435	"T-rich,AluSg,MER57B1"		KIF13A		c6p17904603FS	GGTTGGTAATTTCTTTCATCATTC	c6p17904603ES	GAAATTTCACAGACTCCTTTAAGC
chr6	19018210	19018896	18910231	18910917	-	10637	686	27	L1HS	"COLO1T,COLO1N"	55293	771	"L1HS,MSTA"				c6p19018553FS	GAGAGTGAGTTCTTATGAGATCCG	c6p19018553ES	TGGGAGATATACCTAATGCTAGATG
chr6	19693932	19694224	19585953	19586245	-	12	292	4	L1PA3	"COLO1T,COLO1N"	78	309	"L1PA3,AluSc"				c6p19694078FS	TGTGCTAATTTCTGTTTTTGAGTG	c6p19694078ES	TAGACTGGATTAAGAAAATCTGGC
chr6	19879068	19879503	19771089	19771524	+	773	435	35	L1HS	"COLO1T,COLO1N"	3801	435	"Tigger1,AluJr,L1HS,(A)n"	LINE:dbRIP			c6p19879285FS	TTTTTGTAGAGATGGGGTATCAC	c6p19879285ES	GATGAGTTCATATCCTTTGTAGGG
chr6	21705151	21705774	21597172	21597795	+	17	623	3	noL1	"COLO1T,COLO1N"	29	624	"T-rich,(A)n"		SOX4	SOX4.O	c6p21705462FS	AATCAAACGTTTTCATCTCTCTTG	c6p21705462ES	CTTCTTTTCTACGTGAAATCAGTG
chr6	22254673	22254847	22146694	22146868	-	11	174	4	noL1	"COLO1T,COLO1N"	31	79	(T)n		"AK026189,AK126168,BC044235"		c6p22254760FS	TCTGTAAGTGCGCATATGTAAAAG	c6p22254760ES	ATGTAAGGTATTCCTAACTTCCCC
chr6	23918246	23918517	23810267	23810538	+	7206	271	9	L1PA3	"COLO1T,COLO1N"	81501	302	"L1PA3,L1PA7"				c6p23918381FS	CAGAACTAGGCTAATAAAAGCAGG	c6p23918381ES	TAGACTGGATTAAGAAAATGTGGC
chr6	24919390	24919947	24811411	24811968	-	14574	557	51	L1HS	"COLO1T,COLO1N"	30027	560	"L1HS,AluSz"	LINE:dbRIP	FAM65B		c6p24919668FS	TTTTGTGTTTTCAGTAAGGATGAG	c6p24919668ES	TGGGAGATATACCTAATGCTAGATG
chr6	25516461	25517050	25408482	25409071	+	33	589	3	noL1	"COLO1T,COLO1N"	34	591	"MIR,AluJb,L2b,FLAM_A"		LRRC16A		c6p25516755FS	TTAAAGGGGTAACATGTAAAAAGC	c6p25516755ES	AAGTTTAAAAATTACCTGGGTGTG
chr6	28063608	28064185	27955629	27956206	+	229	577	3	noL1	"COLO1T,COLO1N"	216	579	"MLT1H2,FLAM_C,L1M5"	"LINE:Beck,Ewing"			c6p28063896FS	TGCAGCTCAATCAATAACACTTAC	c6p28063896ES	AAACAGGGCACAAAAGATACTAAC
chr6	32486633	32487028	32378655	32379050	+	1770	395	11	L1HS	"COLO1T,COLO1N"	2034	454	"MIRb,MIRc"	LINE:dbRIP			c6p32486830FS	CTATGTGGATGAAGATACATCTGG	c6p32486830ES	TCATTCTCAGTAAACTATCGCAAG
chr6	32697580	32697772	32589602	32589794	+	67	192	8	noL1	"COLO1T,COLO1N"	98	189	MER66B	"Alu:Stewart,LINE:dbRIP,Ewing,Stewart"			c6p32697676FS	AACTTGGGTATGAGAATAGGATTG	c6p32697676ES	AAGGATGAGACAGTGGTGTTAGAC
chr6	32784276	32784719	32676298	32676741	-	33169	443	48	L1HS	"COLO1T,COLO1N"	72721	443	"T-rich,L1HS,LTR19A,Tigger4b"	LINE:dbRIP			c6p32784497FS	CTATAGGATCTGGATTGACAGAGC	c6p32784497ES	GATGAGTTCATATCCTTTGTAGGG
chr6	33119211	33119523	33011233	33011545	-	196	312	15	L1PA3	"COLO1T,COLO1N"	1165	335	"L1PA3,L1MA4"				c6p33119367FS	CTAGTTCTGTGAAGAATGATGGTG	c6p33119367ES	ATGATGAGTTCATGTCCTTTGTAG
chr6	33400298	33400682	33292320	33292704	+	13	384	3	noL1	"COLO1T,COLO1N"	44	388	"AluSc8,AluJb"				c6p33400490FS	TTTTGTGTTTTTAGTAGAGACGGG	c6p33400490ES	TAATTTCAAGAACCTCAACTTTCC
chr6	35902702	35903147	35794724	35795169	-	39	445	10	L1PA2	"COLO1T,COLO1N"	162	450	"MLT1F2,L1PA2"				c6p35902924FS	CTTAAGGTGCATCTGCCTATAAC	c6p35902924ES	TCATTCTCAGTAAACTATCGCAAG
chr6	37956714	37957356	37848736	37849378	+	55796	642	32	L1HS	"COLO1T,COLO1N"	197000	806	"L1HS,AluSx3"		ZFAND3		c6p37957035FS	AACACTGAACTTTTCTTTCAAACC	c6p37957035ES	CTAATGATAGATGACACGTTGGTG
chr6	39752897	39753359	39644919	39645381	-	53	462	8	L1HS	"COLO1T,COLO1N"	353	483	"L1MEd,L1HS"		KIF6		c6p39753128FS	GCAAACCACTAAATCGACTAAAAC	c6p39753128ES	GATGAGTTCATATCCTTTGTAGGG
chr6	41203756	41204331	41095778	41096353	-	19213	575	24	L1PA2	"COLO1T,COLO1N"	55797	842	"AluSc8,(TTTTA)n,L1PA3,L1PA2"		LOC221442		c6p41204043FS	TTTTTAGTAGAGATGGGGTTTCAC	c6p41204043ES	GAACAATGAGATCACTTGGACAC
chr6	42362737	42363141	42254759	42255163	+	16	404	3	L1PA2	"COLO1T,COLO1N"	1081	404	L1PA2		"rapa,TRERF1"		c6p42362939FS	TAAGTGAAGAGAAAGGAGTTAGGG	c6p42362939ES	TCAGGGATCTAGAACTGGAAATAC
chr6	44952337	44952677	44844359	44844699	+	99	340	5	L1PA2	"COLO1T,COLO1N"	248	349	"L1PA2,(A)n,L1ME2z,L1M4"		SUPT3H		c6p44952507FS	CCATGCACTGGGATATTAAGTAG	c6p44952507ES	ATGATGAGTTCATGTCCTTTGTAG
chr6	46042187	46042462	45934228	45934503	+	365	275	5	noL1	"COLO1T,COLO1N"	2575	310		"LINE:Ewing,Stewart"	CLIC5		c6p46042324FS	TTTTTAAGAAGCCACATTTTTCAC	c6p46042324ES	TTAGGGTCATGTACATCTGAGAAC
chr6	46418243	46418813	46310284	46310854	+	163799	570	94	noL1	"COLO1T,COLO1N"	522293	590	"L1ME4a,AluJr"	"LINE:dbRIP,Ewing,Iskow"	RCAN2		c6p46418528FS	ATATGTTGTTCCCTTGTATTCTGG	c6p46418528ES	AAGGTGAAGTGGAGAAAGATGTAG
chr6	48976233	48976630	48868274	48868671	-	25910	397	42	L1HS	"COLO1T,COLO1N"	64982	397	"MLT2B1,L1HS"				c6p48976431FS	AAGGGACTAAAAAGAGTGTGTGAG	c6p48976431ES	GATGAGTTCATATCCTTTGTAGGG
chr6	49355447	49355653	49247488	49247694	+	22	206	3	noL1	"COLO1T,COLO1N"	19	215	L1PA5				c6p49355550FS	TTTTCCAATTCTCTGAAGAAAGTC	c6p49355550ES	AATAAAATACTGGCAAAACGAATC
chr6	49800690	49801327	49692731	49693368	+	49	637	3	noL1	"COLO1T,COLO1N"	54	296	"(TA)n,L1PA4,L1M4,AluY"				c6p49801008FS	GAAACCCCGTCTCTACTAAAAATAC	c6p49801008ES	AACCATCATTCTCAGCAAACTATC
chr6	50719257	50719719	50611298	50611760	-	155558	462	26	L1HS	"COLO1T,COLO1N"	297550	723	"L1HS,L1PA6"				c6p50719488FS	CTGCCATCATAGTACACAAGACAG	c6p50719488ES	ACACCGCATATTCTCACTCATAG
chr6	51621221	51621653	51513262	51513694	+	252	432	4	noL1	"COLO1T,COLO1N"	379	502			PKHD1		c6p51621437FS	CACAATTGGTATTTTTGGATGAG	c6p51621437ES	GTGAGGAAATTATTGCAAGACAAG
chr6	51736505	51736665	51628546	51628706	-	21	160	2	L1PA2	"COLO1T,COLO1N"	32	161	L2		PKHD1		c6p51736585FS	AGTTCCTTTCAAAATAGCCTGTAG	c6p51736585ES	TAGATTCTGGATATTAGCCCTCTG
chr6	51778934	51779121	51670975	51671162	+	13	187	5	L1PA4	"COLO1T,COLO1N"	7	138	"L2b,L1PA4"		PKHD1		c6p51779027FS	AAATATGTTTTGTCTTTTCCCAAG	c6p51779027ES	GAGAATGGAGTAGATGAGGGTAAG
chr6	51853491	51853956	51745532	51745997	+	7143	465	47	L1HS	"COLO1T,COLO1N"	20726	465	"L1HS,AluY,(T)n"	LINE:dbRIP	PKHD1		c6p51853723FS	CAGGGAATTTTGTTAAATAAGTGG	c6p51853723ES	TCATTCTCAGTAAACTATCGCAAG
chr6	51874399	51874753	51766440	51766794	+	31	354	6	L1PA3	"COLO1T,COLO1N"	28	354	L1PA3		PKHD1		c6p51874576FS	GAAGCTGCGTAAATAAAAGAGTTC	c6p51874576ES	TCATTCTCAGTAAACTATCGCAAG
chr6	52743902	52744038	52635943	52636079	-	45	136	3	L1PA2	"COLO1T,COLO1N"	34	90	"L1PA2,L1PA4"				c6p52743970FS	TCTTTTACAGCACATGTTTTCAAG	c6p52743970ES	CAAATGTCCAACAATGATAGACTG
chr6	52839675	52840072	52731716	52732113	+	44	397	4	L1PA3	"COLO1T,COLO1N"	91	67	"L1PA3,L1PA4"				c6p52839873FS	TGGGTATAACTCCTAATGCTATCC	c6p52839873ES	TGTAAACTAGTTCATCCATTGTGG
chr6	54378238	54378581	54270279	54270622	-	12	343	3	L1PA3	"COLO1T,COLO1N"	106	343					c6p54378409FS	TAGATTAATTAGCCAAGGCAAAAG	c6p54378409ES	TCATTCTCAGTAAACTATCGCAAG
chr6	54810512	54810983	54702553	54703024	-	12650	471	24	L1HS	"COLO1T,COLO1N"	15479	448	"L2a,L1HS"				c6p54810747FS	TTAGAACTCTGTCTTTTGACATGG	c6p54810747ES	TCATTTTCAGTAAACTATCGCAAG
chr6	55619751	55620579	55511792	55512620	-	16749	828	55	L1HS	"COLO1T,COLO1N"	55477	827	"L1HS,L1MA4A,(T)n"				c6p55620165FS	ATCTATTCAATGCTGAAAGTAGGG	c6p55620165ES	TGGGAGATATACCTAATGCTAGATG
chr6	55702557	55702977	55594598	55595018	-	3283	420	34	L1HS	"COLO1T,COLO1N"	3432	598	"L1HS,(T)n"	LINE:dbRIP			c6p55702767FS	AATAATTAATTCCTAGGACAGCCC	c6p55702767ES	ACAACTGCTTTATTAATAGCTGGG
chr6	56537814	56537926	56429855	56429967	-	18	112	3	L1PA7	"COLO1T,COLO1N"	7	65	"AluY,L1PA7"		DST		c6p56537870FS	TTTTGAGATACATTCCATCGATAC	c6p56537870ES	ATGCCTGAGTAAACCAATAAGTTC
chr6	63299857	63299978	63241898	63242019	-	10	121	2	L1PA2	"COLO1T,COLO1N"	15	76	AT_rich				c6p63299917FS	AGCTATTCTCATGTCTCAGTCTCC	c6p63299917ES	TGGAAATCATCATTCTCAGTAAAC
chr6	63889986	63890512	63832027	63832553	+	215	526	12	L1PA3	"COLO1T,COLO1N"	531	396	"AluJb,L1PA3,AT_rich"				c6p63890249FS	TATTGCATTATTTGTTTGATTGTG	c6p63890249ES	AATGCTAGATGACAAGTTAGTGGG
chr6	66316702	66317006	66259981	66260285	-	283	304	14	L1HS	"COLO1T,COLO1N"	1800	594	"L1HS,(T)n"	LINE:dbRIP	"UNQ9424,EYS"		c6p66316854FS	AGATTACATTAGTCAGGGAGATCG	c6p66316854ES	GATGAGTTCATATCCTTTGTAGGG
chr6	66844041	66844382	66787320	66787661	-	11940	341	51	L1HS	"COLO1T,COLO1N"	26549	378	"(TTTTA)n,L1MA1,L1HS,AT_rich"	LINE:dbRIP			c6p66844211FS	CATATATTTATGGGGTACAGGAGC	c6p66844211ES	GATGAGTTCATATCCTTTGTAGGG
chr6	67370361	67370870	67313640	67314149	+	73791	509	39	L1HS	"COLO1T,COLO1N"	315089	519	"L2a,L1HS"				c6p67370615FS	CTCCCAAAGTTATAGGATTACAGG	c6p67370615ES	TAATGCTAGATGACACGTTAGTGG
chr6	67714877	67715122	67658156	67658401	+	28	245	2	noL1	"COLO1T,COLO1N"	188	255		LINE:Stewart			c6p67714999FS	TTGGATTTCTTGTCCTTCTAAAAC	c6p67714999ES	AGCATGATCCTAGAATAACATTGC
chr6	69199764	69200399	69143043	69143678	+	21264	635	50	L1HS	"COLO1T,COLO1N"	117143	650	"THE1B,L1HS,AT_rich"				c6p69200081FS	CTGATCTTGTAGCTCCCATAATTC	c6p69200081ES	ATGCTAGATGACATGTTAGTGGG
chr6	69255047	69255503	69198326	69198782	-	225	456	6	noL1	"COLO1T,COLO1N"	469	456	"L2a,Tigger3a"	"LINE:dbRIP,Ewing,Iskow,Stewart"			c6p69255275FS	GAGTTTTTCTCCTTTATTCCTTCC	c6p69255275ES	AGATAGCTCTCCTGAATACCAGTG
chr6	69579285	69580206	69522564	69523485	-	94	921	17	L1PA4	"COLO1T,COLO1N"	470	918	"THE1A,L1PA4,L1PA7"		BAI3		c6p69579745FS	CCCGTCATCTACATTAGGTATTTC	c6p69579745ES	GTTGTGCACATGTACCCTAAAAC
chr6	69870342	69870653	69813621	69813932	-	325	311	7	L1PA2	"COLO1T,COLO1N"	2767	400	"L1PA2,AT_rich"		BAI3		c6p69870497FS	CCAACTTTCTGTCTCAATAATCAC	c6p69870497ES	TCATTCTCAGTAAACTATCGCAAG
chr6	70059326	70059497	70002605	70002776	-	12	171	2	L1PA3	"COLO1T,COLO1N"	43	74	"L1PA3,LTR33A"		"BAI 3,BAI3"		c6p70059411FS	TATTCTCCTTTCTCAGAGTTCCTG	c6p70059411ES	AGTAAGAGAAAGTGGGTGTTTGTC
chr6	70267943	70268421	70211222	70211700	+	2935	478	30	L1PA2	"COLO1T,COLO1N"	12007	489	"L1PA2,L1M3f"				c6p70268182FS	ACTGGGTGGAATGTTCTATAATTG	c6p70268182ES	TCATTCTCAGTAAACTATCGCAAG
chr6	70782935	70783484	70726214	70726763	+	26804	549	32	L1HS	"COLO1T,COLO1N"	50477	541	"L1HS,AT_rich,L1ME1"	LINE:dbRIP	COL19A1		c6p70783209FS	ATTCTAAATAATGCTGCCATGAAC	c6p70783209ES	TGGGAGATATACCTAATGCTAGATG
chr6	71894103	71894528	71837382	71837807	-	104	425	7	L1PA2	"COLO1T,COLO1N"	426	444	"L1MC,LTR16B1"				c6p71894315FS	TTTTGGTTCATCACTATGACATTC	c6p71894315ES	AACAATGAGATCACATGGATACAG
chr6	72924615	72924913	72867894	72868192	-	106	298	7	L1PA4	"COLO1T,COLO1N"	212	207	"L1MEg,L1PA4"		RIMS1		c6p72924764FS	ATTCTATCTTTTCATTTTCTTGCC	c6p72924764ES	CATAAAAATGATGAGTTCATGTCC
chr6	73754552	73755127	73697831	73698406	-	73488	575	17	L1HS	"COLO1T,COLO1N"	295329	575	"L1HS,MIR,L1PA16"		KCNQ5		c6p73754839FS	GTTATTCAGTTGTGCTGATGAAAG	c6p73754839ES	TGGGAGATATACCTAATGCTAGATG
chr6	74051294	74052148	73994573	73995427	-	9376	854	62	L1HS	"COLO1T,COLO1N"	31892	928	"AluSx1,L1HS,AluSq2"	LINE:Iskow	"AK090984,AL832252,KHDC1"		c6p74051721FS	CCTGTGAAGTTTTGTGTCTGTTAC	c6p74051721ES	CAATATGCACATGTACCCTAAAAC
chr6	74350478	74350697	74293757	74293976	+	10	219	5	noL1	"COLO1T,COLO1N"	6	67	"T-rich,FLAM_C"				c6p74350587FS	TTTGTATTTTTAGTAGAGACGGGG	c6p74350587ES	GTTTAGTGTGCATTTCTTTTCTCC
chr6	74684618	74684868	74627890	74628140	+	37	250	3	noL1	"COLO1T,COLO1N"	19	363	L1PA3				c6p74684743FS	CTGTAGTTCGGAGTAGTTTCATTG	c6p74684743ES	CAGTCTGAGATTAAACTGCAAGG
chr6	74921697	74922226	74864977	74865506	-	956	529	11	L1HS	"COLO1T,COLO1N"	218	511	"L4,L1HS"	LINE:dbRIP	AF086303		c6p74921961FS	TATGACATGATAGTTCCTGTGGTC	c6p74921961ES	TGGGAGATATACCTAATGCTAGATG
chr6	74991841	74992197	74935121	74935477	-	1382	356	14	noL1	"COLO1T,COLO1N"	8562	508	L1MD1	LINE:Ewing	AF086303		c6p74992019FS	TTACCCTTTTGATGTATCCAAGTC	c6p74992019ES	GAGCTGCAAAATAGGTAAAGAAAC
chr6	77823797	77824106	77767078	77767387	+	13	309	4	L1PA4	"COLO1T,COLO1N"	64	310	"L1PA4,L1M5"				c6p77823951FS	ACATTTTAATCAACTGAATGCAAC	c6p77823951ES	ATGATGAGTTCATGTCCTTTGTAG
chr6	77848879	77849193	77792160	77792474	-	11	314	4	noL1	"COLO1T,COLO1N"	39	458	"L1PA2,(T)n"				c6p77849036FS	CATTCCCATACTCAGTTTCTTCTC	c6p77849036ES	GTTCAATCATTGTAGAGGTCAGTG
chr6	78037058	78037401	77980339	77980682	-	1879	343	22	noL1	"COLO1T,COLO1N"	4283	458	"L2c,L2"	"LINE:dbRIP,Ewing,Iskow,Stewart"			c6p78037229FS	AAGTGTCAAGATGAAATATGGCTC	c6p78037229ES	ATATGTTCAAAATCCTGTGATCTG
chr6	78706281	78706436	78649562	78649717	-	598	155	9	noL1	"COLO1T,COLO1N"	827	222	MLT1N2	LINE:Iskow			c6p78706358FS	GAAACACTCTGAATTTTGGATACC	c6p78706358ES	ATTTCTGTCAAGGATAACAAAACC
chr6	78757051	78757493	78700332	78700774	-	13	442	2	L1PA4	"COLO1T,COLO1N"	50	379	"C-rich,MLT1K"				c6p78757272FS	ACTTACGTAATTGAGAAATCCCAC	c6p78757272ES	TGTTAAATGACAAGTTAATGGGTG
chr6	79787849	79788488	79731130	79731769	+	10	639	2	noL1	"COLO1T,COLO1N"	2	65	"L1MA2,AT_rich,AluSx"		PHIP		c6p79788168FS	TCGCACTCTTGATAAGTGATAGAC	c6p79788168ES	AGAGACAGGAGTTTTACCATGTTG
chr6	79908435	79908540	79851716	79851821	-	36	105	7	L1PA5	"COLO1T,COLO1N"	247	81	L1PA5				c6p79908487FS	TAGAGAATAGGTGCTGCCTCTTAG	c6p79908487ES	ATTCACACATATGTTTATTGCAGC
chr6	80132065	80132449	80075346	80075730	-	16	384	2	noL1	"COLO1T,COLO1N"	76	387	L1P1				c6p80132257FS	AATAGTTTCAGAAGGAATGGTACG	c6p80132257ES	ACATAGTTGGAAGTAAAGCACTCC
chr6	81620171	81620367	81563452	81563648	+	82	196	6	L1PA3	"COLO1T,COLO1N"	731	400	"L1PA3,L1M3e"				c6p81620269FS	TTTTTAGTAGAAATGGGGATTCAC	c6p81620269ES	GACTGGATTAAGAAAATATGGCAG
chr6	81682632	81683134	81625913	81626415	-	23	502	6	L1PA3	"COLO1T,COLO1N"	348	470	"L1ME4a,L1PA3"				c6p81682883FS	ATCCTTGACCTAAAATAAATCACG	c6p81682883ES	AAAAACCAAACACCACATATTCTC
chr6	82167663	82168203	82110944	82111484	+	2276	540	24	L1PA2	"COLO1T,COLO1N"	10640	811	"L1PA2,L1PA5"				c6p82167933FS	AGGTTCATCTATCCTATCAGCTTG	c6p82167933ES	AAAAACCAAACACTGCATATTCTC
chr6	83734721	83734857	83678002	83678138	-	485	136	11	noL1	"COLO1T,COLO1N"	1120	173	L1M5	"LINE:Ewing,Iskow"	UBE2CBP		c6p83734789FS	CAACTCCATACCTAGCTTTCATTC	c6p83734789ES	TTTAAAAACCCCAACTGTTAGTTC
chr6	84106361	84106808	84049642	84050089	+	19027	447	24	L1HS	"COLO1T,COLO1N"	21937	586	"L1HS,L1MD"		ME1		c6p84106584FS	TAGAATGCTTAAAATTGTGACTGG	c6p84106584ES	TCATTCTCAGTAAACTATCGCAAG
chr6	85380850	85381039	85324131	85324320	+	1012	189	10	L1HS	"COLO1T,COLO1N"	677	207	"L1HS,AT_rich"	LINE:dbRIP			c6p85380944FS	TCTTTCATCAAGGAATCTCTTTTC	c6p85380944ES	TCATTCTCAGTAAACTATCGCAAG
chr6	86079740	86080212	86023021	86023493	+	16	472	4	L1PA3	"COLO1T,COLO1N"	43	478	"L1MA1,(A)n"				c6p86079976FS	GAGCTAAAGAGCATGTACTAACCC	c6p86079976ES	TAATGCTAAATGACGAGTTAATGG
chr6	86484441	86484711	86427722	86427992	+	232	270	10	L1PA3	"COLO1T,COLO1N"	940	468	"L1PA3,MER57A-int"				c6p86484576FS	TTTACCTTGAATCTTGGATCTCTC	c6p86484576ES	CAAATGTCCAACAATGATAGACTG
chr6	86699609	86699844	86642890	86643125	-	10	235	2	noL1	"COLO1T,COLO1N"	151	388	L1PA4				c6p86699726FS	GATAAACTTTTTGATGTGTTGCTG	c6p86699726ES	ATGAAGGCAGAAATAAAGATGTTC
chr6	86765189	86765534	86708470	86708815	-	7732	345	12	L1HS	"COLO1T,COLO1N"	26685	543	"L1HS,L1PA5"	LINE:dbRIP			c6p86765361FS	CTAGCTTTGTCTACTGAAAGGGTC	c6p86765361ES	GATGAGTTCATATCCTTTGTAGGG
chr6	87070081	87070224	87013362	87013505	-	25	143	2	L1PA4	"COLO1T,COLO1N"	2	65	"L1PA4,L1PA7"				c6p87070152FS	GTAGTTGTGTGGTTTTTGAGTGAG	c6p87070152ES	AAATGTTCAACAATGATAGACTGG
chr6	87503645	87504367	87446926	87447648	+	2502	722	16	L1PA3	"COLO1T,COLO1N"	10772	829	"L1PA3,L1PA5,L1PA4"				c6p87504006FS	GTATACATGTGCCATAATGGTGTG	c6p87504006ES	TGCTATATGACAAGTTAATGGGTG
chr6	88610745	88611187	88554026	88554468	+	100	442	9	noL1	"COLO1T,COLO1N"	365	442	"AluY,L1MC5"		AY927641		c6p88610966FS	GACACAGCAGATATTATAGGGCTC	c6p88610966ES	TTTTAGTAGAGACTGGGTTTCACC
chr6	91725809	91726242	91669088	91669521	-	85	433	10	L1PA13	"COLO1T,COLO1N"	515	472	"L1PA13,AT_rich,L1MEc"	"LINE:Ewing,Iskow"			c6p91726025FS	TTTTTCAAACTTTTAAGTTCAGGG	c6p91726025ES	ACAAATGGAACTTCTAAAGAGGG
chr6	91767881	91768034	91711160	91711313	-	629	153	5	noL1	COLO1T	0	0	"MIRb,L1MC5"				c6p91767957FS	AGAACCTCTGACAGAACTACCAAG	c6p91767957ES	TGAGTCAGAAAACATGAAATATGG
chr6	94631752	94632241	94575031	94575520	-	317	489	8	L1HS	"COLO1T,COLO1N"	1015	489	L1HS				c6p94631996FS	TTCGCATACCAGTAAATATGAAAC	c6p94631996ES	TCATTCTCAGTAAACTATCGCAAG
chr6	94963930	94964509	94907209	94907788	-	2757	579	24	L1HS	"COLO1T,COLO1N"	5904	486	L1HS				c6p94964219FS	AGACCTGGATTGATAACAGAAATC	c6p94964219ES	TAATGCTAGATGACACGTTAGTGG
chr6	96222350	96222640	96115629	96115919	+	74	290	7	L1PA2	"COLO1T,COLO1N"	154	497	"L1PA2,(A)n"				c6p96222495FS	CAAGTGAGAGACAAACACTATTGG	c6p96222495ES	TGGAAATCATCATTCTCAGTAAAC
chr6	96416654	96416866	96309933	96310145	-	12	212	4	L1PA3	"COLO1T,COLO1N"	29	204					c6p96416760FS	TGCTGATAAAATGGAGTCAGATAG	c6p96416760ES	AGGATGAGTTCATGTCATTTGTAG
chr6	98134760	98135371	98028039	98028650	-	36092	611	80	L1HS	"COLO1T,COLO1N"	83707	584	"MamRep605,MER102a,L1HS"		AK091365		c6p98135065FS	CCTGTGTTTTAGAATCAGACTGTG	c6p98135065ES	AAGCATATTCTCACTCATAGGTGG
chr6	100449285	100449873	100342564	100343152	-	224922	588	122	L1HS	"COLO1T,COLO1N"	618442	573	"HAL1,L1HS"				c6p100449579FS	TGCTTATCTAAATTTTCCATCTCC	c6p100449579ES	ACTAATTGACCACACATTTTATGC
chr6	101632928	101633114	101526207	101526393	+	13	186	4	noL1	"COLO1T,COLO1N"	62	208	"MLT1G1,L2a"				c6p101633021FS	GGAAACATTTAGACCATAGCAGAC	c6p101633021ES	AGAGGGAAAATACATGAGTAAACG
chr6	101740362	101740632	101633641	101633911	-	190	270	3	L1PA3	"COLO1T,COLO1N"	982	271	"AluSx1,Tigger3b"				c6p101740497FS	TAAGTTGCTATGGGTAAGTCAGTG	c6p101740497ES	CTCACTCATAGATGGGAACTGAAC
chr6	102390294	102390491	102283601	102283798	-	414	197	9	noL1	"COLO1T,COLO1N"	1118	410	"HAL1,AluSx1"	"LINE:dbRIP,Ewing"	GRIK2		c6p102390392FS	TTTTCTATGAAAATGTCATTCCTTC	c6p102390392ES	GAAGTTTCCAAGCTTCAGAAATAG
chr6	102696155	102696567	102589462	102589874	-	16	412	2	L1PA4	"COLO1T,COLO1N"	160	66	"L1M6,L1PA4"				c6p102696361FS	CAACATAAGACCCAATATTTCTCC	c6p102696361ES	TAATGAGTTCATGTCCTTTGTAGG
chr6	102730212	102730413	102623519	102623720	+	72	201	11	L1PA2	"COLO1T,COLO1N"	646	208	"(TG)n,L1PA2"				c6p102730312FS	TAGTCAATGCCTTAGTATCCTGTG	c6p102730312ES	TAGACTGGATTAAGAAAATGTGGC
chr6	103134522	103134649	103027829	103027956	-	20	127	3	L1PA6	"COLO1T,COLO1N"	40	137	L1PA6				c6p103134585FS	GGGAAAATTGTTGATATTAACTGG	c6p103134585ES	GGAGAAAGCAGAAACGTAATAGAG
chr6	104209004	104209263	104102311	104102570	-	13587	259	12	L1PA2	"COLO1T,COLO1N"	23307	445	L1PA2				c6p104209133FS	AGATTTACTATGTGTGGAATGTGG	c6p104209133ES	TCATTCTCAGTAAACTATCGCAAG
chr6	104498767	104499367	104392074	104392674	-	39	600	5	L1PA2	"COLO1T,COLO1N"	24	656	"L1PA2,MLT1C,(T)n,AluSg"				c6p104499067FS	GGCTATAAGTCTGAGATCAAGGTG	c6p104499067ES	AAAAATACAAAAATTAGCTGGGTG
chr6	104645869	104646558	104539176	104539865	+	38	689	6	L1PA4	"COLO1T,COLO1N"	333	213	"L1MA9,L1PA4,L1MD"				c6p104646213FS	TAGAGACAAGGCAGGGATATCTAC	c6p104646213ES	ACGATAGACTGGATTAAGAAAACG
chr6	104648420	104648771	104541727	104542078	+	25	351	4	L1PA3	"COLO1T,COLO1N"	175	351	L2c				c6p104648595FS	TTTGAGTGTTCAAAATTCTACAGTG	c6p104648595ES	CTCACTCATAGATGGGAATTGAAC
chr6	106955508	106956032	106848815	106849339	-	20148	524	48	L1HS	"COLO1T,COLO1N"	45977	749	"L2c,L1HS"				c6p106955770FS	ATAATGCCAGAAGAAAATTACAGC	c6p106955770ES	TCATTCTCAGTAAACTATCGCAAG
chr6	106977819	106978577	106871126	106871884	-	11	758	3	noL1	"COLO1T,COLO1N"	11	67	"AluJb,(T)n"				c6p106978198FS	AGAAACTTGCCTCATCAAAGTAAG	c6p106978198ES	ATATTTTGCCTTTTGCATATTAGG
chr6	110475494	110475670	110368801	110368977	+	18	176	2	L1PA4	"COLO1T,COLO1N"	35	223	MER5A				c6p110475582FS	GACTCAAATGTTAATCTCCTTTGG	c6p110475582ES	ATAGACCATGGAATACTATGCAGC
chr6	110583034	110583493	110476341	110476800	-	4993	459	17	L1HS	"COLO1T,COLO1N"	9293	524	"L1HS,L3"	LINE:dbRIP	WASF1		c6p110583263FS	AAGCCTGGATCTTATGTAAAGTTG	c6p110583263ES	CCATCATTCTCAGTAAACTATTGC
chr6	110610743	110610856	110504050	110504163	-	10	113	2	noL1	"COLO1T,COLO1N"	40	104	L2c		CDC40		c6p110610799FS	GTATCCTTTTCTCTTCCTTCTTCC	c6p110610799ES	TCTTTTTCATTCCATTCTCTTACC
chr6	113137613	113137958	113030920	113031265	+	23425	345	36	L1HS	"COLO1T,COLO1N"	75481	348	L1HS	LINE:dbRIP			c6p113137785FS	CTTAGGATTCAATGATACTTTGGG	c6p113137785ES	GATGAGTTCATATCCTTTGTAGGG
chr6	114033201	114033721	113926508	113927028	-	11873	520	46	L1HS	"COLO1T,COLO1N"	32083	581	"L1HS,L2b"				c6p114033461FS	TCAATATCTTCGAGTTCAGTATCG	c6p114033461ES	TCATTCTCAGTAAACTATCGCAAG
chr6	114197776	114198684	114091083	114091991	+	612	908	10	noL1	"COLO1T,COLO1N"	2658	908	"AluJr,AluSx1,(T)n,FLAM_A"	LINE:Stewart			c6p114198230FS	TAAACACTTCGGATCAAACAATC	c6p114198230ES	TGAAATCTCTCTGTATTTTCCAGAC
chr6	115457429	115457942	115350736	115351249	+	1253	513	15	noL1	"COLO1T,COLO1N"	2621	1110	L1ME1	"LINE:Ewing,Iskow"			c6p115457685FS	AACTTTGTGTTGACATTTTTGTTG	c6p115457685ES	CTAGAACATAATCCAAAAGAAGGG
chr6	115609071	115609536	115502378	115502843	+	14	465	4	L1PA2	"COLO1T,COLO1N"	69	466	"L1PA2,MLT2C1,AluSz"				c6p115609303FS	TCGTCTTTCCTCTTTCTTCTCTAC	c6p115609303ES	TAGATGACAAGTTAGTGGGTGAAG
chr6	116006378	116006763	115899685	115900070	-	3946	385	31	L1HS	"COLO1T,COLO1N"	10267	650	"L1HS,LTR85a,MamRep605,(T)n"				c6p116006570FS	AATAAATGCATGAAGGAGAAGAAG	c6p116006570ES	GATGAGTTCATATCCTTTGTAGGG
chr6	117139357	117139467	117032664	117032774	-	25	110	3	noL1	"COLO1T,COLO1N"	93	114	"(TG)n,L1MB5"		KPNA5		c6p117139412FS	TTTTGTAGAGACATGGTTTCACC	c6p117139412ES	GAGCAAGATTCTGTCTCAAAAAG
chr6	117535986	117536496	117429293	117429803	+	502	510	22	L1HS	"COLO1T,COLO1N"	1691	631	"L1HS,L1MA3,(A)n,LTR84b,(TTA)n"				c6p117536241FS	CAATTGTTTTAATTTTTAGCTCCC	c6p117536241ES	AACACCGCATATTCTCACTCATAG
chr6	117678585	117678717	117571892	117572024	+	11	132	3	L1PA2	"COLO1T,COLO1N"	449	152	"L1PA2,L1ME3D"				c6p117678651FS	CTGACATATTTTTGCTGTTGAGTC	c6p117678651ES	CAAATGTCCAACAATGATAGACTG
chr6	118478212	118478581	118371519	118371888	+	684	369	25	L1PA4	"COLO1T,COLO1N"	1903	374	"L2b,L1PA4"		SLC35F1		c6p118478396FS	ATCAGCTTAAGATGTTTTCTCCAC	c6p118478396ES	CCTTTGTAGGGACATAGATGAAAC
chr6	119420709	119421090	119379010	119379391	-	12	381	3	noL1	"COLO1T,COLO1N"	20	381	"AluSx,MLT1G3,AT_rich,HY4"		FAM184A		c6p119420899FS	TTTTAATTATTCAGGTGTGGTGG	c6p119420899ES	AGATTTAAGAGAAGGAGAATTGGG
chr6	120238190	120238565	120196491	120196866	-	55	375	4	noL1	COLO1T	0	0					c6p120238377FS	TTCCAGATTTGTTAGGTTCTATGG	c6p120238377ES	TTTCAGGAAATCAAAAATAAAAGC
chr6	121186478	121187048	121144779	121145349	+	1400	570	8	L1PA3	"COLO1T,COLO1N"	3723	370	"L1PA3,L1PA4"				c6p121186763FS	GAACTAGTTTACAGTCCCACCAAC	c6p121186763ES	CAAATGTCCAACAATGATAGACTG
chr6	121531286	121532054	121489587	121490355	+	336076	768	73	L1HS	"COLO1T,COLO1N"	931064	776	"L1HS,L1P3"		C6orf170		c6p121531670FS	CTTTCCTCATTGCTTATTTTTGTC	c6p121531670ES	AACACCACATATGCTCACTCATAG
chr6	122899938	122900043	122858239	122858344	-	24	105	3	L1PA4	"COLO1T,COLO1N"	21	84	L1PA4		PKIB		c6p122899990FS	CTTTTGATTTGAATGGAGATTTTC	c6p122899990ES	CTAATGTCCAACAACGATAGACTG
chr6	123251591	123251734	123209892	123210035	-	196	143	9	L1PA3	"COLO1T,COLO1N"	557	244	"L3,(TTTTTA)n"				c6p123251662FS	TAGCATCCCAATAGAAAACCTTAC	c6p123251662ES	TCATTCTCAGTAAACTATCGCAAG
chr6	123543095	123543502	123501396	123501803	-	690	407	14	L1HS	"COLO1T,COLO1N"	2621	408	"HAL1,L1PA8,L1HS"				c6p123543298FS	AGCAAAATTGGAGAATAAATGAAG	c6p123543298ES	ATGATGAGTTCATGTCCTTTGTAG
chr6	123809248	123809593	123767549	123767894	+	21	345	8	L1PA3	"COLO1T,COLO1N"	102	375	"L2a,AluY"		"TRDN,AL832096"		c6p123809420FS	AACCTAATTACAATGTGAAGGGAG	c6p123809420ES	TGGAAATCATCATTCTCAGTAAAC
chr6	123895308	123895644	123853609	123853945	-	8527	336	31	noL1	"COLO1T,COLO1N"	16242	345	"MER33,MLT2C1"	"LINE:Ewing,Stewart"	TRDN		c6p123895476FS	GGGTGTGATAGTTTTATTATTGGC	c6p123895476ES	ATCTCTTAAAGGCAACTCCCTTAG
chr6	125204635	125205167	125162936	125163468	+	40448	532	46	L1HS	"COLO1T,COLO1N"	60671	532	"L1HS,L2"				c6p125204901FS	AAAAGCTATCAAAGATGAGGTCAG	c6p125204901ES	TTCTCAGTAAACTATCGCAAGAAC
chr6	125652288	125652885	125610589	125611186	+	1202	597	14	L1HS	"COLO1T,COLO1N"	3154	599	"L1HS,(CAAAA)n"	LINE:dbRIP	"NS5ATP2,HDDC2"		c6p125652586FS	TGGTTTTTGGTTTAAGAAAGTAGG	c6p125652586ES	ACACTGCATATTCTCACTCATAGG
chr6	125684892	125685462	125643193	125643763	+	91688	570	40	L1HS	"COLO1T,COLO1N"	275774	592	"L1HS,AT_rich,FRAM"				c6p125685177FS	ACTTGTCCTCTTGGAGTTTCATAG	c6p125685177ES	TAATGCTAGATGACACGTTAGTGG
chr6	125734026	125734346	125692327	125692647	-	843	320	13	L1HS	"COLO1T,COLO1N"	2870	334	L1HS	"LINE:Ewing,Iskow"			c6p125734186FS	GTCAGTGGAAATAACTTTGAGACC	c6p125734186ES	TCATTCTCAGTAAACTATCGCAAG
chr6	125750458	125750559	125708759	125708860	-	10	101	4	noL1	"COLO1T,COLO1N"	13	94	"SVA_E,L1MEf,(TTTA)n"				c6p125750508FS	TAGATCCTATTTGTCAATTCTGGC	c6p125750508ES	CTGTGTGGATAGAAGTAGACATGG
chr6	127092140	127092512	127050447	127050819	+	13	372	3	noL1	"COLO1T,COLO1N"	26	369	L1PA5		AK127472		c6p127092326FS	ATTGGAATAGTTTCAGAAGGAATG	c6p127092326ES	CACAGTGCAATCAAACTAGAACTC
chr6	127201283	127201469	127159590	127159776	-	12	186	3	noL1	"COLO1T,COLO1N"	4	182	L1PA7		AK127472		c6p127201376FS	TCAAAGATCAGATGGTTGTAGATG	c6p127201376ES	ATCATAATGAATAGGCAAAACCTG
chr6	127981102	127981615	127939409	127939922	+	102	513	8	noL1	"COLO1T,COLO1N"	386	512	L1HS	LINE:dbRIP			c6p127981358FS	TCCACATCAGTTTATGAGTTATGG	c6p127981358ES	TAGACTGGATTAAGAAAATGTGGC
chr6	130149399	130149638	130107706	130107945	+	11	239	2	noL1	"COLO1T,COLO1N"	1	65	"AluJr,Zaphod"		ARHGAP18		c6p130149518FS	CATTTGACTTAAGTTGTGGACTTG	c6p130149518ES	AAATACTAACATCAGAGGCTCCAC
chr6	133382995	133383587	133341302	133341894	-	175814	592	131	L1HS	"COLO1T,COLO1N"	456285	592	"L1ME3B,L1HS"	LINE:dbRIP			c6p133383291FS	GGTCATGAAGACATTCCCTTATAG	c6p133383291ES	TGGGAGATATACCTAATGCTAGATG
chr6	133504070	133505188	133462377	133463495	-	110	1118	12	L1PA3	"COLO1T,COLO1N"	512	876	"THE1B,L1PA3"				c6p133504629FS	AAGACCTAATAATTGAGTGCTTGG	c6p133504629ES	TGGGAGATATACCTAATGCTAGATG
chr6	134861683	134861795	134819990	134820102	+	379	112	5	noL1	"COLO1T,COLO1N"	1054	89	"(TA)n,AluSx3"		"BC041589,AK055166"		c6p134861739FS	CAAAGGCTGTCTCAGTATTTTCTC	c6p134861739ES	TTGTAAACTCATTAGATGTGGCAG
chr6	135640185	135640455	135598492	135598762	+	40	270	2	noL1	"COLO1T,COLO1N"	24	270	"L1PB3,AluSq"				c6p135640320FS	GGAGTACAAGTGGTTTTTGGTTAC	c6p135640320ES	TAGATCTACCATCAACCCCACTAC
chr6	136754354	136754681	136712661	136712988	+	7232	327	28	L1HS	"COLO1T,COLO1N"	49515	580	"L2a,L1HS,MIR,(CAA)n"		"MAP,MAP7"		c6p136754517FS	ATGCAGAGCAGTAAGTGTACTTTG	c6p136754517ES	GATGAGTTCATATCCTTTGTAGGG
chr6	137213540	137213884	137171847	137172191	-	704	344	18	L1HS	"COLO1T,COLO1N"	1185	872	"T-rich,L1HS,L2,(T)n"		PEX7		c6p137213712FS	TATGATGTTAGCTGGTTATTTTGC	c6p137213712ES	TCATTCTCAGTAAACTATCGCAAG
chr6	137266161	137266719	137224468	137225026	-	16	558	2	noL1	"COLO1T,COLO1N"	4	567	"AluJb,AT_rich,FLAM_C"		PEX7		c6p137266440FS	TAGTTATCCAGAAGTGACTACCCC	c6p137266440ES	AATAGAGGTTTGAACCAAAACAAG
chr6	142491386	142491808	142449693	142450115	-	140894	422	39	noL1	"COLO1T,COLO1N"	521368	547	L1MA9	"LINE:dbRIP,Ewing,Iskow"			c6p142491597FS	TATTTATAGCAATGCATGAACAGG	c6p142491597ES	TCTTGGTGTCCTAAAACTTCTTTC
chr6	142784983	142785277	142743290	142743584	-	10	294	3	L1PA2	"COLO1T,COLO1N"	9	294	L1PA2		GPR126		c6p142785130FS	AATTAAAAGGCAGTGATACAGAGC	c6p142785130ES	GGGACTGTAAACTAGTTCAACCAC
chr6	145542429	145542598	145500736	145500905	-	1397	169	6	noL1	"COLO1T,COLO1N"	3311	408	L1PA8				c6p145542513FS	GAAGCACACACAAGTATCAATAGC	c6p145542513ES	ATTGATTTGTGTATGTTGAACCAG
chr6	145868033	145868382	145826340	145826689	+	89	349	5	L1PA2	"COLO1T,COLO1N"	366	163	"(CA)n,L1PA2,L1MC4"				c6p145868207FS	CAGAAACATTTAATCTTGGTGATG	c6p145868207ES	TCATTCTCAGTAAACTATCGCAAG
chr6	148205349	148205765	148163656	148164072	+	12	416	3	noL1	"COLO1T,COLO1N"	22	218	"Charlie4a,AluSx1,L3"	"LINE:Ewing,Iskow,Stewart"			c6p148205557FS	AAAAATACAACAATTAGCTAGGCG	c6p148205557ES	TTGTTGGTCCATAGAACTAATCTG
chr6	149186941	149187557	149145248	149145864	-	843	616	21	L1HS	"COLO1T,COLO1N"	6220	618	L1HS	LINE:Iskow	UST		c6p149187249FS	ACAAGGAGATAACAGAAAAAGCTG	c6p149187249ES	TAATGCTAGATGACACGTTAGTGG
chr6	149518785	149519140	149477092	149477447	+	333	355	8	noL1	"COLO1T,COLO1N"	131	167	L1ME4a	"LINE:Ewing,Iskow"			c6p149518962FS	GAAATTACTGCCAAATAAATCTGC	c6p149518962ES	ATGTGAGTCCATTAAACCTCTTTC
chr6	151018521	151018945	150976828	150977252	+	20	424	3	L1PA7	"COLO1T,COLO1N"	29	425	"AluY,L1PA7"		PLEKHG1		c6p151018733FS	CTCCTAATTCCTAGTTCCAAGGAC	c6p151018733ES	TAAAAATACGAAAGATTAGCTGGC
chr6	152211253	152211431	152169560	152169738	+	15	178	6	L1PA2	"COLO1T,COLO1N"	42	499	L1PA2		ESR1		c6p152211342FS	AAATAAAAATAAAAGCTGGTGTGC	c6p152211342ES	CAAATGTCCAACAATGATAGACTG
chr6	152881949	152882457	152840256	152840764	+	1292	508	10	L1PA4	"COLO1T,COLO1N"	6667	292	"L1PA4,L1MC4a"		"SYNE1,KIAA1756"		c6p152882203FS	TTGAATACTTGGTAATGTGGTGTC	c6p152882203ES	TAATGCTAAATGACAAGCTAATGG
chr6	153071254	153071740	153029561	153030047	-	1406	486	13	L1HS	"COLO1T,COLO1N"	6903	486	"L1MEf,L1HS,FLAM_A"	LINE:dbRIP	"MTLC,MYCT1"		c6p153071497FS	TGCCTAGGTATGTTATGCTTAATG	c6p153071497ES	TCATTCTCAGTAAACTATCGCAAG
chr6	153759081	153759452	153717388	153717759	-	23	371	3	L1PA3	"COLO1T,COLO1N"	223	178	"L1PA3,(TTTTC)n"				c6p153759266FS	CTGCCTCTTTCTTTCTTTCTTTC	c6p153759266ES	CTAGAAATACCATTTGACCTAGCC
chr6	156402930	156403559	156361238	156361867	+	5387	629	25	L1HS	"COLO1T,COLO1N"	16365	642	"L1HS,L1MEc"				c6p156403244FS	TCTGTTTTTGTACTTTCTCATTGG	c6p156403244ES	TAATGCTAGATGACACGTTAGTGG
chr6	156665832	156665941	156624140	156624249	+	11	109	2	noL1	COLO1T	0	0	L1MC1				c6p156665886FS	TGCTATTGAATCACAGTGAAAAAG	c6p156665886ES	ATCACTAGAGGGAATGCAAAATAG
chr6	156687284	156687847	156645592	156646155	-	140278	563	81	L1HS	"COLO1T,COLO1N"	468310	696	"L1HS,L1MA4"				c6p156687565FS	ATTGTATTGCAGTCTATCTTTCCC	c6p156687565ES	ACACCGCATATTCTCACTCATAG
chr6	159887851	159888296	159967861	159968306	-	54624	445	59	L1HS	"COLO1T,COLO1N"	90592	461	"L1HS,L1MA3"				c6p159888073FS	TAAGATAAGCCTAATCCAAGCAAC	c6p159888073ES	TCATTCTCAGTAAACTATCGCAAG
chr6	160204968	160205071	160284978	160285081	-	15	103	2	L1PA4	"COLO1T,COLO1N"	18	344	"AT_rich,L1PA4"				c6p160205019FS	TTATTTATTTAGAGACGGGGTCTG	c6p160205019ES	ACCCTGTGTGACGTATGTTTATAG
chr6	160749566	160750095	160829576	160830105	-	48085	529	65	L1HS	"COLO1T,COLO1N"	149988	552	L1HS	LINE:Iskow	SLC22A3	SLC22A3.3	c6p160749830FS	AAATAATCATCACTGAAGCTTTCC	c6p160749830ES	TTCTCAGTAAACTATCGCAAGAAC
chr6	161696258	161696396	161776268	161776406	-	31	138	2	noL1	"COLO1T,COLO1N"	180	341	L2c		"parkin,PARK2"		c6p161696327FS	AGAAACTTTCCTACAGTCACGAAC	c6p161696327ES	TTTGCTGAATTAAAACTTAGCTTG
chr6	162101247	162101708	162181257	162181718	+	781	461	12	noL1	"COLO1T,COLO1N"	3638	472	MER61A	"LINE:dbRIP,Ewing,Iskow,Stewart"	"parkin,PARK2"		c6p162101477FS	TTCATGCCATTGATAACAGTTTAG	c6p162101477ES	ATATACCCTTTTACCACACAGCTC
chr6	162324886	162325331	162404896	162405341	+	15069	445	30	L1HS	"COLO1T,COLO1N"	79677	447	"AluSx,L1HS,MLT1K"		"parkin,PARK2"		c6p162325108FS	AATTAAAGAATGAAAAACACAGCC	c6p162325108ES	TCATTCTCAGTAAACTATCGCAAG
chr6	165639905	165640421	165719915	165720431	+	23257	516	43	L1HS	"COLO1T,COLO1N"	41305	519	"L1HS,(A)n"		C6orf118		c6p165640163FS	AATTTTGGCAATATGTATTAACCC	c6p165640163ES	TCATTCTCAGTAAACTATCGCAAG
chr6	165643093	165643286	165723103	165723296	-	61	193	3	noL1	"COLO1T,COLO1N"	27	225	AT_rich		C6orf118	C6orf118.F	c6p165643189FS	CTGGTTTCAGATTCTCTGAGGAG	c6p165643189ES	ATATTTTTCAGATCACGGAAAGTG
chr6	167669414	167669625	167749424	167749635	+	13	211	3	L1PA2	"COLO1T,COLO1N"	68	211	"L1PA2,L1MA5A"		TTLL2		c6p167669519FS	no primer	c6p167669519ES	no primer
chr7	503984	504120	537458	537594	+	36	136	5	noL1	"COLO1T,COLO1N"	135	146	L1MDa		PDGFA	PDGFA.L	c7p504052FS	CTTCCTTGTCAAAAAGAGAGAGAG	c7p504052ES	CAAAAATAAAGAATTTGGGTTCTG
chr7	2469782	2470334	2503256	2503808	+	26	552	2	noL1	"COLO1T,COLO1N"	68	552	"AluJb,AluY"				c7p2470058FS	AGTTAAAGACCAGCCTGAGAAAC	c7p2470058ES	ATCAAAAATACAAGAAATTAGCCG
chr7	2539546	2539709	2573020	2573183	-	36	163	5	noL1	"COLO1T,COLO1N"	69	165	"SVA_E,(T)n"				c7p2539627FS	CTACTGAAGCAGAAGCACGAG	c7p2539627ES	CTGTGTGGATAGAAGTAGACATGG
chr7	4615119	4615235	4648593	4648709	+	38	116	7	L1PA4	"COLO1T,COLO1N"	106	267	"AluJb,L1PA4"				c7p4615177FS	AGGGACAAAAACAAAAACAAAAC	c7p4615177ES	CCAGCCTAATCATTCTCATTTAAC
chr7	7168110	7168282	7201585	7201757	-	54	172	2	L1PA3	"COLO1T,COLO1N"	114	119	"T-rich,L1PA3"				c7p7168196FS	ACCATGAGGCTCAGAAAATAGTAG	c7p7168196ES	CAAATGTCCAACAATGATAGACTG
chr7	7477219	7477345	7510694	7510820	+	446	126	8	L1HS	"COLO1T,COLO1N"	91	139	"L1PB1,L1HS,AT_rich"		"COL28A1,COL28"		c7p7477282FS	GGTGTATCACATTTATTGACTTGC	c7p7477282ES	GATGAGTTCATATCCTTTGTAGGG
chr7	7777068	7777205	7810543	7810680	+	10	137	4	L1PA2	"COLO1T,COLO1N"	15	101	L2a				c7p7777136FS	ACCCTAGCTATATGTGATTTCAGG	c7p7777136ES	TGGTCTGAGTATGTAGGAACATTG
chr7	7853171	7853678	7886646	7887153	+	14	507	4	L1HS	"COLO1T,COLO1N"	152	508	"MER81,(TA)n,L1HS,MIRc"		LOC401307		c7p7853424FS	CAAGGCTTCATTTAGATTTGAGTC	c7p7853424ES	TAGGGATAGCATTGGGAGATATAC
chr7	8657310	8657410	8690785	8690885	-	23	100	2	noL1	"COLO1T,COLO1N"	76	65	L1PA3		NXPH1		c7p8657360FS	AGGTAGAAGCCACTAATACAGACG	c7p8657360ES	TTAAATCTGAATAAATCCGAAAGG
chr7	9602429	9602910	9635904	9636385	+	19728	481	28	L1HS	"COLO1T,COLO1N"	80481	481	"(TAAA)n,L1HS,THE1D-int"	LINE:dbRIP			c7p9602669FS	CTCTCTTCTCATAGCTCCACTAGG	c7p9602669ES	TCATTCTCAGTAAACTATCGCAAG
chr7	11081084	11081789	11114559	11115264	-	62	705	3	noL1	"COLO1T,COLO1N"	573	709	"MSTB,AluSx3,MSTB-int"		PHF14		c7p11081436FS	ACTCTAAGAAGTTCCAAATTGTCC	c7p11081436ES	TTGGATATATGTCTCCTCCAAATC
chr7	11432172	11432829	11465647	11466304	+	8731	657	21	L1HS	"COLO1T,COLO1N"	49425	663	L1HS		THSD7A		c7p11432500FS	CCTACCTTATTTCTCTCCCTTTTC	c7p11432500ES	ATAAAGTGGACCTGTCTCAAAGAG
chr7	11527385	11527683	11560860	11561158	-	26	298	6	L1HS	"COLO1T,COLO1N"	240	299	L1HS		THSD7A		c7p11527534FS	CTTATAGGAAATCAGAACGCTGAC	c7p11527534ES	AGGGTACATTGAAGTTGAGGTAAC
chr7	17061215	17061458	17094690	17094933	+	31	243	5	noL1	"COLO1T,COLO1N"	252	178	AT_rich				c7p17061336FS	TCCACTTGTTTTAAGGCTTTTTAG	c7p17061336ES	TCCTAATACACAGGTTCCTTCTTC
chr7	18012138	18012729	18045613	18046204	-	19	591	2	L1PA2	"COLO1T,COLO1N"	110	256	L1PA7				c7p18012433FS	ATAGATATATATGTGCCATGGTGG	c7p18012433ES	AAAAATTCATTAAACCTTGGACTG
chr7	21097302	21097452	21130777	21130927	+	16	150	3	L1PA4	"COLO1T,COLO1N"	57	404					c7p21097377FS	CAGGAGAAGCTTACTTGTAAGGAG	c7p21097377ES	ATGATGAGTTCATGTCCTTTGTAG
chr7	22936443	22936626	22969918	22970101	+	124	183	7	L1PA4	"COLO1T,COLO1N"	106	183	"L1M4b,(A)n,L1PA4"				c7p22936534FS	TGTTTCTTTGATTATTTGATTTGC	c7p22936534ES	CAAATGTCCAACAATGATAGACTG
chr7	23347852	23348065	23381327	23381540	+	11	213	3	L1PA8	"COLO1T,COLO1N"	17	69	"L1PA8,AT_rich"		IGF2BP3		c7p23347958FS	TTTCCCTTGATTCTTTTAATTGTC	c7p23347958ES	ATTGACTTCAGGTGACAAAGATG
chr7	24105929	24106362	24139404	24139837	-	29	433	3	L1PA3	"COLO1T,COLO1N"	248	586	"L1PA3,L1PA4,L1MA6"				c7p24106145FS	TTCAAATACAAGATTTCTGTCTGG	c7p24106145ES	AAAAACTAAACACCGCATATTCTC
chr7	24941855	24942082	24975330	24975557	-	144	227	3	L1PA3	"COLO1T,COLO1N"	325	432	L1PA4		OSBPL3		c7p24941968FS	CATCACCACAGAGAAAACTACAAG	c7p24941968ES	GTGGATTGTGAGAGGAAAAGTTAG
chr7	25047473	25048055	25080948	25081530	-	7634	582	31	L1HS	"COLO1T,COLO1N"	25994	405	"L1HS,AluSz"	LINE:Ewing			c7p25047764FS	ATACATCTGATTTCAACACACCAC	c7p25047764ES	TGGGAGATATACCTAATGCTAGATG
chr7	25657243	25657681	25690718	25691156	-	10	438	4	L1PA2	"COLO1T,COLO1N"	18	368	"L1PA2,MLT1J2"		AK057379		c7p25657462FS	CCTAGGCTTTATTTACGTATCTCG	c7p25657462ES	AATGCTGCATATTCTCACTCATAG
chr7	28749433	28750038	28782908	28783513	-	467693	605	54	L1HS	"COLO1T,COLO1N"	689968	606	"AluJb,L1HS,MLT1C"		CREB5		c7p28749735FS	GTTGAGACTTGGATGACAGTGTAG	c7p28749735ES	TGGGAGATATACCTAATGCTAGATG
chr7	30451363	30452073	30484838	30485548	+	15604	710	49	L1HS	"COLO1T,COLO1N"	32546	675	"AluSx1,L1HS,L1MB2,(A)n"	LINE:dbRIP	NOD1		c7p30451718FS	TTCATACATCAGTACACCAGAAGG	c7p30451718ES	TGGGAGATATACCTAATGCTAGATG
chr7	31489916	31490394	31523391	31523869	-	20194	478	60	L1HS	"COLO1T,COLO1N"	69204	523	"L2a,L1PB1,L1HS,(T)n"	LINE:dbRIP			c7p31490155FS	ATAGCCATTCCTATGACTTGTAGC	c7p31490155ES	TCATTCTCAGTAAACTATCGCAAG
chr7	32356295	32356789	32389770	32390264	-	1198	494	11	L1HS	"COLO1T,COLO1N"	7325	526	"(TA)n,L1HS,L1MC5"	LINE:dbRIP			c7p32356542FS	TTTGTATTCATGTGATGCTTATCC	c7p32356542ES	ACACCGCATATTCTCACTCATAG
chr7	32890473	32890655	32923948	32924130	+	158	182	9	noL1	"COLO1T,COLO1N"	150	191	"AluJr,AluSq"		KBTBD2		c7p32890564FS	GCCTGTAACCTGTTCTTGTAAAC	c7p32890564ES	AGGTAAAATGAGCAAAGGTATCTG
chr7	34175276	34175710	34208751	34209185	-	1026	434	20	L1PA2	"COLO1T,COLO1N"	4708	442	"L1MDa,L1PA2"				c7p34175493FS	GATAGATTTTTGTGTGCATTTTTG	c7p34175493ES	TTCTCAGTAAACTATCGCAAGAAC
chr7	34922213	34922690	34955688	34956165	+	6642	477	31	L1PA3	"COLO1T,COLO1N"	52381	478	"L1PA3,L1MEc"				c7p34922451FS	ATTTGTTCACGTTATTACCATTCC	c7p34922451ES	TGCATGTTCTCACTCATAGATAGG
chr7	36204429	36204568	36237904	36238043	+	15	139	4	noL1	"COLO1T,COLO1N"	102	147	L1M2		EEPD1		c7p36204498FS	AAGCAGTGATCAATCAGAAATTG	c7p36204498ES	ATTCTTCCATGGAGCTGAGTAG
chr7	39684273	39684723	39717748	39718198	+	2176	450	14	L1PA2	"COLO1T,COLO1N"	7461	531	"L2a,MLT1D,L1PA2"		RALA		c7p39684498FS	ATTTATTCTACTTGGCAAAACTGC	c7p39684498ES	TAGATTCTGGATATTAGCCCTTTG
chr7	39967648	39967814	40001123	40001289	-	10	166	3	L1PA4	"COLO1T,COLO1N"	14	130	"L1PA4,L1MA7"		CDC2L5		c7p39967731FS	GAAACCCCGTCTCTACTAAAAATAC	c7p39967731ES	CAAATGTCCAACAATGATAGACTG
chr7	41276823	41277355	41310298	41310830	-	1747	532	13	noL1	"COLO1T,COLO1N"	2876	448		LINE:Ewing			c7p41277089FS	TGTCAGTTGTTACCTCTCTCTTTG	c7p41277089ES	CAACTGATGAATCAAAATGCATAC
chr7	43071204	43071423	43104679	43104898	+	10	219	6	L1PA2	"COLO1T,COLO1N"	152	221	"L1PA2,(GGGA)n,A-rich"				c7p43071313FS	ATGGCATGGATTAATTACCATAAG	c7p43071313ES	TACTATGCAGCCATAAAAATGATG
chr7	45700200	45700800	45733675	45734275	+	182427	600	99	L1HS	"COLO1T,COLO1N"	339968	540	"L1HS,L1M4"		ADCY1		c7p45700500FS	CATCAGGTAAAGTACTGAAAAGGG	c7p45700500ES	GGGAGACATACCTAATGCTAGATG
chr7	46316300	46316898	46349775	46350373	-	1407	598	19	noL1	"COLO1T,COLO1N"	2139	747	"(CA)n,L1MEe"	"LINE:Ewing,Iskow,Stewart"			c7p46316599FS	TTTGTTCTCTCCAATATCTTCCTC	c7p46316599ES	ACATCAGAAATCAAACTTTAAGGC
chr7	46831732	46832284	46865207	46865759	+	31834	552	47	L1HS	"COLO1T,COLO1N"	78728	514	"L1MC3,L1HS,L1MDa"				c7p46832008FS	TCACTGTTAAATTTATTGGGGTTC	c7p46832008ES	TAATGCTAGATGACACGTTAGTGG
chr7	47319004	47319176	47352479	47352651	+	77	172	7	L1PA4	"COLO1T,COLO1N"	273	482	"AT_rich,L1PA4"		TNS3		c7p47319090FS	CTCTAAGCCTTTGCTAGTTCATTC	c7p47319090ES	AAAAATACAAAAATTAGCTGGGTG
chr7	48007635	48008326	48041110	48041801	-	1456	691	5	noL1	"COLO1T,COLO1N"	4647	67	"L1PA13,AluY"		SUNC1		c7p48007980FS	TATCATTGATCAGCATTTAGGTTG	c7p48007980ES	TGAAACCCCATCTCTACTAAAAATAC
chr7	48857615	48857952	48887069	48887406	+	344	337	7	L1PA3	"COLO1T,COLO1N"	343	336	L1PA3				c7p48857783FS	CTTGCAGGGTGTGAAGAAGATG	c7p48857783ES	AATAAATCGGTCTGGTATTAGCC
chr7	49689902	49690481	49719356	49719935	-	362	579	13	L1HS	"COLO1T,COLO1N"	788	591	"MLT1J-int,L1PA3,L1HS"	LINE:dbRIP			c7p49690191FS	CTTCAGAGTGTGTAAAAACATTGC	c7p49690191ES	TGGGAGATATACCTAATGCTAGATG
chr7	51639850	51640590	51672356	51673096	+	375	740	10	L1PA3	"COLO1T,COLO1N"	454	861	L1PA3				c7p51640220FS	ATAAGAAACTTCTTTCAGAGCTGC	c7p51640220ES	GCTGCTATAAAGATACATGCACAC
chr7	52367065	52367299	52399571	52399805	+	10	234	2	noL1	"COLO1T,COLO1N"	6	234	L1PA5				c7p52367182FS	TATACCACAGTAATGGGATGTCTG	c7p52367182ES	CAGAGCCCTAAGAAATAATACCAC
chr7	52757134	52757274	52789640	52789780	+	10	140	3	noL1	"COLO1T,COLO1N"	262	323		"LINE:Ewing,Stewart"			c7p52757204FS	ATTCATATGTTGAAACCTAATCCG	c7p52757204ES	AAACCCCGTGTCTACTAAAAATAC
chr7	53619629	53620013	53652135	53652519	-	67529	384	53	noL1	"COLO1T,COLO1N"	172337	337	L1M7	"LINE:Beck,Ewing,Stewart"			c7p53619821FS	ATTGGATTTGGTAAACATTGCTAC	c7p53619821ES	AAGCTTTGCTCTGACATCTAACTC
chr7	54612457	54612701	54644963	54645207	-	27	244	3	noL1	COLO1T	0	0	MLT1A0		BC036261		c7p54612579FS	AAAGAGTAAATGACAGTACAGCACC	c7p54612579ES	ATTATTTGTCCAACAACTTTCTCC
chr7	57957320	57957476	57953378	57953534	+	31	156	6	noL1	"COLO1T,COLO1N"	109	78	ALR/Alpha				c7p57957398FS	TCTTTTTGTAGTATCTGCAAGTGG	c7p57957398ES	GGAGTTTTTCAGAATGCTTCTATC
chr7	57961272	57962494	57957330	57958552	-	14	1222	5	noL1	"COLO1T,COLO1N"	34	96	ALR/Alpha				c7p57961883FS	CTTTATGATGTGCTCATTCATCTC	c7p57961883ES	AGATATTTCTTTTTCACCATAGGC
chr7	57966792	57967547	57962850	57963605	+	30	755	3	noL1	"COLO1T,COLO1N"	59	754	ALR/Alpha	Alu:Hormozdiari			c7p57967169FS	TCTTCTGATGTGTTCATTCATCTC	c7p57967169ES	TATTTCCTTTTCTACCATAGGCTG
chr7	57991783	57992483	57987841	57988541	-	20	700	2	noL1	"COLO1T,COLO1N"	5	700	ALR/Alpha				c7p57992133FS	TCACAGAGTTAAACCTTTTGATTG	c7p57992133ES	TTTTGAAACTCTCTCTTTGTGATG
chr7	58030667	58031381	58026725	58027439	+	49	714	2	noL1	"COLO1T,COLO1N"	1023	720	ALR/Alpha				c7p58031024FS	ATCTTATTTGTGATGTGTGTGCTC	c7p58031024ES	TACAAAAAGATTGTTTCCTCACTG
chr7	58053943	58054277	58050001	58050335	+	304	334	2	noL1	"COLO1T,COLO1N"	3673	79	ALR/Alpha	Alu:Hormozdiari			c7p58054110FS	GTAGTATCTGCAAGGGGATATTTG	c7p58054110ES	GGTTTCCAAACTACTCATCAAAAG
chr7	58056841	58057176	58052899	58053234	+	47	335	2	noL1	"COLO1T,COLO1N"	357	382	ALR/Alpha	Alu:Hormozdiari			c7p58057008FS	AAGCATTCTGACAAATTTCCTTAC	c7p58057008ES	GAAGATATTTCCTTTCCACCATAG
chr7	61087132	61087528	61083190	61083586	-	11	396	5	noL1	"COLO1T,COLO1N"	16	541	ALR/Alpha	Alu:Hormozdiari			c7p61087330FS	TTTTGAAAGAGCAGATTAGAAACC	c7p61087330ES	TTGAGTACACACATCACAAACAAG
chr7	61089166	61089821	61085224	61085879	-	17	655	4	L1PA2	"COLO1T,COLO1N"	691	1259	ALR/Alpha				c7p61089493FS	AGTTGAACATTCCCTTTCATAGAG	c7p61089493ES	TAATGCTAGATGACGAGTTAGTGG
chr7	61094147	61094617	61090205	61090675	-	11	470	2	noL1	"COLO1T,COLO1N"	20	1136	ALR/Alpha				c7p61094382FS	TCGAAAACTTCTCTGTAATGTTTG	c7p61094382ES	AGATATTTCCTTTTCCTCCATAGG
chr7	61268971	61269496	61265029	61265554	-	10	525	2	noL1	"COLO1T,COLO1N"	67	498	ALR/Alpha				c7p61269233FS	AATTGAACCTTTCTTTTGATTGAG	c7p61269233ES	TTATGTGGAGATATTTCCTTTTCC
chr7	61293608	61294668	61289666	61290726	-	14836	1060	50	L1HS	"COLO1T,COLO1N"	32017	1074	"L1HS,ALR/Alpha"	Alu:Hormozdiari			c7p61294138FS	ATGTTCAACTTTGTGAGATGAATG	c7p61294138ES	AATTTATATTTGGATCGCTTTGAG
chr7	61464281	61464716	61826846	61827281	+	14535	435	53	L1HS	"COLO1T,COLO1N"	27818	555	"L1HS,L1PA4"				c7p61464498FS	GAATTTGACAATTATGTGTCTTGG	c7p61464498ES	TCATTCTCAGTAAACTATCGCAAG
chr7	61604606	61605614	61967171	61968179	-	41368	1008	16	noL1	"COLO1T,COLO1N"	157448	1008	ALR/Alpha	Alu:Hormozdiari			c7p61605110FS	CAGATTTGAAACACTCTTTTTGTG	c7p61605110ES	CAAACTCCTCTATGAAAAGAAAGG
chr7	61605978	61607314	61968543	61969879	-	314	1336	19	noL1	"COLO1T,COLO1N"	764	1461	ALR/Alpha	"Alu:Hormozdiari,Witherspoon"			c7p61606646FS	TTAGACAGAGCAGATTTGAAACAC	c7p61606646ES	CAAACTCCTCTATGAAAAGAAAGG
chr7	61607759	61607971	61970324	61970536	-	8640	212	12	noL1	"COLO1T,COLO1N"	23181	539	ALR/Alpha	Alu:Hormozdiari			c7p61607865FS	GAAACTCTCTGTTGGTAATGTGTG	c7p61607865ES	TTCCACTCTGTCAGTTGAATACAC
chr7	61699356	61700306	62061921	62062871	-	47	950	5	L1PA3	"COLO1T,COLO1N"	220	1267	"L1PA3,ALR/Alpha"				c7p61699831FS	ACGTGAAGATATTTCCTTTTTCAC	c7p61699831ES	CTAGAAAGAGGCATTCTGAGAAAC
chr7	62130394	62130754	62492959	62493319	+	4470	360	17	noL1	"COLO1T,COLO1N"	8349	401	"(TTTG)n,AluY,L1MEc"	"LINE:Ewing,Iskow"			c7p62130574FS	GTGTGAAAGTAATTGCAGTTTTTG	c7p62130574ES	ATGCAAGTCTTGAAAGGAATAAAC
chr7	62246261	62246692	62608826	62609257	-	3605	431	23	L1HS	"COLO1T,COLO1N"	3337	431	"L1M3,L1HS,AT_rich"	LINE:dbRIP			c7p62246476FS	AACACTGAATGGAGAATAGAGAGC	c7p62246476ES	TCATTCTCAGTAAACTATCGCAAG
chr7	65236928	65237032	65599493	65599597	-	143	104	4	noL1	"COLO1T,COLO1N"	352	354	AT_rich		"RCP9,CRCP"		c7p65236980FS	TTTTAATTACAGTCATTGCCTTTG	c7p65236980ES	TAAATAAGGTTGCATCATTTATGG
chr7	65388960	65389301	65751525	65751866	-	10	341	3	L1HS	"COLO1T,COLO1N"	416	363	"T-rich,L1HS"		TPST1	"TPST1.3,TPST1.2,TPST1.1"	c7p65389130FS	AATAATGCACATGTTTCAGCTAAC	c7p65389130ES	GATGAGTTCATATCCTTTGTAGGG
chr7	65534583	65534921	65897148	65897486	+	56	338	9	L1PA2	"COLO1T,COLO1N"	150	396					c7p65534752FS	GTTTTTAATGACCAGATAAAAGGC	c7p65534752ES	TCATTCTCAGTAAACTATCGCAAG
chr7	66228198	66228470	66590763	66591035	-	7658	272	25	noL1	"COLO1T,COLO1N"	31535	482	L1MC1	LINE:Ewing	TYW1		c7p66228334FS	TTTACATTAGGGTTCATTGTTGTG	c7p66228334ES	TGCAAAAGACATATCTGATAAAGG
chr7	66534345	66534672	66896910	66897237	-	11	327	4	L1PA8	"COLO1T,COLO1N"	3	326	"L1PA8,MER5B,AluJb"				c7p66534508FS	ATGAAGCTAGAAACCATCATTCTC	c7p66534508ES	TTGAAGATAAAATAAAAGGATGCC
chr7	69306270	69306552	69668334	69668616	+	30107	282	11	L1HS	"COLO1T,COLO1N"	154858	282	L1HS		AUTS2		c7p69306411FS	TTTCAAAACATAATTCTCGATCAC	c7p69306411ES	AACCATCTCTCAGTAAACTATCGC
chr7	69466336	69466542	69828400	69828606	+	1469	206	10	L1HS	"COLO1T,COLO1N"	847	364	"L1HS,AT_rich"	LINE:dbRIP	AUTS2		c7p69466439FS	TTGCAATCTACTAAAAGAAACAGG	c7p69466439ES	CTAATGAGATGCATTTATTCCTCC
chr7	69819528	69819985	70181592	70182049	-	36	457	7	noL1	"COLO1T,COLO1N"	31	75	"Charlie9,AluY,AluJr4,AT_rich"		AUTS2		c7p69819756FS	ATCCTGGCTAACACAGTGAAAC	c7p69819756ES	ATAGCAAGACGGTGTCTCCATAG
chr7	69826120	69826635	70188184	70188699	-	2764	515	14	noL1	"COLO1T,COLO1N"	9258	523	MIR	"LINE:dbRIP,Ewing,Iskow"	AUTS2		c7p69826377FS	ATTAGAAGAAGGATGTGGAAAGTG	c7p69826377ES	ACTCTGTCTCAAAAACCCTTCTC
chr7	69946851	69947247	70308915	70309311	+	10	396	3	noL1	"COLO1T,COLO1N"	36	397	L1PA7				c7p69947049FS	AGGCTTGCATGTTCTAAATAATTC	c7p69947049ES	AGAGAATGTGGAGAAATAGGAATG
chr7	75173502	75173940	75335566	75336004	-	2101	438	25	L1HS	"COLO1T,COLO1N"	5481	666	"L1HS,L1MB2,(T)n,L1PA6"		HIP1		c7p75173721FS	TTTTTAGTAGAGATGGGGTTTCAC	c7p75173721ES	GATGAGTTCATATCCTTTGTAGGG
chr7	77152656	77153069	77314720	77315133	-	2360	413	29	L1PA4	"COLO1T,COLO1N"	10490	433	L1PA4		BC037783		c7p77152862FS	ATTACCTGTTTTGAAGAAAAGCTG	c7p77152862ES	AATACTTAACACCTACCTGTTGCC
chr7	77461054	77461391	77623118	77623455	+	51	337	3	noL1	"COLO1T,COLO1N"	115	73	AluJo				c7p77461222FS	GAAGTCCCTAATCAGATGCTAATG	c7p77461222ES	TAACACAAATTTGAAGTGGATGAG
chr7	78334912	78335236	78496976	78497300	+	881	324	20	L1PA3	"COLO1T,COLO1N"	3239	434	L1PA3		MAGI2		c7p78335074FS	TATGTAGTAGGCATTCAGTGTTGG	c7p78335074ES	AAAAACCAAACACCACATATTCTC
chr7	80932999	80933762	81095063	81095826	-	384	763	3	L1PA11	"COLO1T,COLO1N"	279	525	L1PA3				c7p80933380FS	TAGGTATATCTCCCAATGCTATCC	c7p80933380ES	AAACTACCATCAGAGTGAATAGGC
chr7	81529649	81529845	81691713	81691909	-	12	196	3	L1PA5	"COLO1T,COLO1N"	71	288	L2c		CACNA2D1		c7p81529747FS	TTTATAAGGGCAGTTTCGTTTTAG	c7p81529747ES	AACAAATACAAAAGAAAAACCAGC
chr7	83074052	83074202	83236116	83236266	+	89	150	3	L1HS	"COLO1T,COLO1N"	143	409			SEMA3E		c7p83074127FS	AGTAAAGAACATGCTCAGTGAGTG	c7p83074127ES	TCATTCTCAGTAAACTATCGCAAG
chr7	83487176	83487337	83649240	83649401	-	16	161	2	noL1	"COLO1T,COLO1N"	368	65	AluSx		SEMA3A		c7p83487256FS	TTATTCTTTCCCTTTTTAATGACG	c7p83487256ES	ATATAAGATCATTAACAGCTGGGC
chr7	83535439	83535809	83697503	83697873	+	17	370	2	L1PA2	"COLO1T,COLO1N"	75	484	L1PA2		SEMA3A		c7p83535624FS	AAATTGGAAGCACTTCTCATCTAC	c7p83535624ES	TCAGGGATCTAGAACTGGAAATAC
chr7	84739438	84739651	84901502	84901715	-	176	213	7	noL1	"COLO1T,COLO1N"	412	188	LTR16E1	"LINE:Ewing,Iskow,Stewart"			c7p84739544FS	AATTATGAAGGCTTTGTCTCTGTC	c7p84739544ES	AAGAGTCTGGTACCATGTATGTCC
chr7	85621414	85621674	85783478	85783738	+	38	260	7	L1PA3	"COLO1T,COLO1N"	145	260	L1PA3				c7p85621544FS	CTAGGTCCTCGCCTTATCTTTC	c7p85621544ES	TTTGAGAACTGTCTGTTCATATCC
chr7	85792286	85792570	85954350	85954634	+	216	284	14	L1HS	"COLO1T,COLO1N"	218	290	"L1HS,L1MEg"				c7p85792428FS	ATTTCTCCTTTCTGTTGCTCTATG	c7p85792428ES	AATTTATAGGCATTGGCTTAACAG
chr7	85951086	85951330	86113150	86113394	-	14	244	3	L1PA3	"COLO1T,COLO1N"	23	229	"L1PA3,AluY"				c7p85951208FS	TAAGAGATTCTGAGACATACAGGG	c7p85951208ES	ATAGACTGGATTAAGGAAATGTGG
chr7	88324557	88325126	88486621	88487190	-	127	569	4	L1PA4	"COLO1T,COLO1N"	140	569	"T-rich,L1PA4,AluSz6"		ZNF804B		c7p88324841FS	AGAACTAGAGAAGCAAGAGCAAAC	c7p88324841ES	TAAAACTACAAAAATTAGCTGGGC
chr7	88437947	88438284	88600011	88600348	+	14	337	2	noL1	"COLO1T,COLO1N"	20	338	"MER58A,L1PA4,A-rich"		ZNF804B		c7p88438115FS	ATTGAGTTTTGTCTTCTTATTGCC	c7p88438115ES	AGATTTCCTTTTGTAATTTTGCAG
chr7	88885394	88885499	89047458	89047563	-	15	105	6	noL1	"COLO1T,COLO1N"	194	68	"(T)n,LTR52"				c7p88885446FS	ATCTTCAAGTTCACTGTTTCTTCC	c7p88885446ES	GTAAGCAGAGACACACACAAACTC
chr7	89542427	89542950	89704491	89705014	+	65139	523	28	L1HS	"COLO1T,COLO1N"	426569	535	"L1HS,L1PA5"				c7p89542688FS	TTTTTGAATAAGGTGTAAGGAAGG	c7p89542688ES	TCATTCTCAGTAAACTATCGCAAG
chr7	89671932	89672433	89833996	89834497	+	42	501	3	noL1	"COLO1T,COLO1N"	49	503	"L1PA3,MIR"		STEAP2		c7p89672182FS	CTATCCCGCTCATTTTAATTTATG	c7p89672182ES	TGAATCATGCTGCTATAAAGACAC
chr7	90822996	90823106	90985060	90985170	-	114	110	4	noL1	COLO1T	0	0					c7p90823051FS	GAGATACTTTGGGACCATGTAAAC	c7p90823051ES	TCATTTGTTTGTAAATGAGAGCAG
chr7	92937694	92938016	93099758	93100080	-	127	322	13	L1PA3	"COLO1T,COLO1N"	414	460	(TTTTTA)n		"CALCR,HCTR-6"		c7p92937855FS	GAGCTGATAAAATCTTCAGGTAGC	c7p92937855ES	TTAAAATGCTTTTCACATTCTCAG
chr7	92984289	92984519	93146353	93146583	-	177	230	5	noL1	"COLO1T,COLO1N"	284	205	MIRc	"LINE:Ewing,Iskow,Stewart"	CALCR		c7p92984404FS	AATAATGGAGTGTCAGAAGTCCTC	c7p92984404ES	AGTTCACCTGCTTTTAGTTTTCAG
chr7	93738634	93738848	93900698	93900912	+	703	214	8	L1PA4	"COLO1T,COLO1N"	1946	383	L1PA4				c7p93738741FS	AATGTTTCTGTTTCTTCATGGTTC	c7p93738741ES	CATTTTCCAACAGTAGCTTGTATG
chr7	96313833	96313956	96475897	96476020	-	304	123	11	L1HS	"COLO1T,COLO1N"	381	124	"L1MD2,L1HS,T-rich"				c7p96313894FS	TTATGTGATGAATTCTCAATGCTC	c7p96313894ES	CTGCTATAAAGACACATGCACAC
chr7	97086884	97087380	97248948	97249444	+	1332	496	23	L1HS	"COLO1T,COLO1N"	3484	810	"(TAAAAA)n,L1HS,(A)n,AluSx1"				c7p97087132FS	TTTTAGTAGAGACGAAGTTTTGCC	c7p97087132ES	CCATCATTCTCAGTAAACTATTGC
chr7	98681737	98682151	98843801	98844215	+	16	414	4	noL1	"COLO1T,COLO1N"	103	414	"AluJr,AluSz"				c7p98681944FS	AACATATATACTGCAGAAGGTCCC	c7p98681944ES	GGGGTCTCTTTTTAAGAGTAGGTC
chr7	99314044	99314146	99476108	99476210	+	176	102	6	noL1	"COLO1T,COLO1N"	321	103	"MLT2F,AluY"				c7p99314095FS	AACCTTATTTGCCTATTGATTCAG	c7p99314095ES	TTTGTATTTTTAGTAGAGACGGGG
chr7	100559187	100559308	100772467	100772588	+	34	121	4	noL1	COLO1T	0	0	AluY		SERPINE1		c7p100559247FS	TTCCTTTCTTTCTTTGTTTCTTTG	c7p100559247ES	GTAGATTTACCGCTTATTCACCAC
chr7	103546656	103546772	103759420	103759536	-	77	116	5	L1PA4	"COLO1T,COLO1N"	221	134	L2				c7p103546714FS	AAGATCACTAATCCATTCATGAGG	c7p103546714ES	AACACCACATGTTCTCACTCATAG
chr7	103662650	103662858	103875414	103875622	-	316	208	7	L1PA4	"COLO1T,COLO1N"	1709	644	L1ME1				c7p103662754FS	ACGGTGAAACCCTGTCTCTAC	c7p103662754ES	ATGAAACTGGAAACCATCATTC
chr7	104256658	104256986	104469422	104469750	-	21	328	4	L1PA4	"COLO1T,COLO1N"	141	322	AluSz		LHFPL3		c7p104256822FS	GGAAGGTAAGAGGGAAATAAAGAG	c7p104256822ES	AACACCACATGTTCTCACTCATAG
chr7	105408265	105408373	105621029	105621137	-	11	108	6	L1HS	"COLO1T,COLO1N"	57	111	"L1HS,(T)n"		"CDH28,FLJ23834"		c7p105408319FS	CAAGATATAACTTAACGGCAATCC	c7p105408319ES	ATCAAATATGTTTGGTCCTGTTTC
chr7	105529411	105529829	105742175	105742593	+	38	418	3	noL1	"COLO1T,COLO1N"	23	742	"MLT1F1,AT_rich,AluSx1,L1ME3F"		SYPL1		c7p105529620FS	GAGAGTGAGAAAGGAAGACAGAAG	c7p105529620ES	TAGGAAGAGTCTGAGGTAATGTCC
chr7	106356825	106357103	106569589	106569867	-	181	278	3	L1PA4	"COLO1T,COLO1N"	552	297	"LTR89,MLT1A0"				c7p106356964FS	TTATTGATTCCTTAATTCCCAAAG	c7p106356964ES	AGGATGAGTTCATGTCCTTTGTAG
chr7	107197839	107197955	107410603	107410719	-	40	116	13	L1PA13	"COLO1T,COLO1N"	29	150	"AluJb,(TTTC)n,(T)n"	Alu:Hormozdiari	"SLC26A3,DKFZp686P10213"		c7p107197897FS	TCCAGTAGAAAGGGAGAGATTAAG	c7p107197897ES	TGATAAGTGCTAAGAGAAAAGCAG
chr7	107616488	107616668	107829252	107829432	+	509	180	3	noL1	"COLO1T,COLO1N"	1145	180		"LINE:dbRIP,Ewing,Iskow,Stewart"	NRCAM		c7p107616578FS	TTAGTTGTTTATTTTGCCCATTTC	c7p107616578ES	CCACAGAGATTTTTGACTATTTTG
chr7	108112933	108113280	108325697	108326044	+	443	347	9	noL1	"COLO1T,COLO1N"	1256	467		"LINE:Ewing,Stewart"			c7p108113106FS	AAAGTCATTTCTGTAGGTTTCCAG	c7p108113106ES	ACTAAAAATACACAAAATTCGCTG
chr7	108525630	108526453	108738394	108739217	+	88599	823	36	L1HS	"COLO1T,COLO1N"	180248	821	"L1P1,L1HS,AT_rich,A-rich"				c7p108526041FS	AAATGAAAAGAAAAAGCATCTCAC	c7p108526041ES	CATATGTAACTAACCTGCACAATG
chr7	109084386	109084972	109297150	109297736	+	13	586	3	noL1	"COLO1T,COLO1N"	13	591	"L1MEd,(A)n"				c7p109084679FS	AACAACAACCATAGTGATCCTACC	c7p109084679ES	TCAAAATATTTCCCCATATTTCAG
chr7	109335887	109336567	109548651	109549331	+	48277	680	48	L1HS	"COLO1T,COLO1N"	181513	793	"L1HS,L1PA3"				c7p109336227FS	CCTTTAAGCACTTCTCTGTATTGG	c7p109336227ES	TGGGAGATATACCTAATGCTAGATG
chr7	109342193	109342548	109554957	109555312	-	3651	355	26	L1HS	"COLO1T,COLO1N"	4474	324	"L1HS,AT_rich"				c7p109342370FS	AACATTTCTCTGAGAGTTTCAAGG	c7p109342370ES	TCATTCTCAGTAAACTATCGCAAG
chr7	109430466	109430573	109643230	109643337	+	12	107	7	noL1	"COLO1T,COLO1N"	22	104	"AluSc8,(CA)n"				c7p109430519FS	AGTTTTTCTATCCTCATCCTCCTC	c7p109430519ES	AATAGAAGAGCAATATGAACCAGG
chr7	109984584	109984893	110197348	110197657	-	85	309	6	L1PA2	"COLO1T,COLO1N"	177	319	"L1PA2,L1ME2"				c7p109984738FS	CTGAGACAGGCTGTAACTGAATC	c7p109984738ES	CAAATGTCCAACAATGATAGACTG
chr7	110133791	110134337	110346555	110347101	-	177588	546	62	L1HS	"COLO1T,COLO1N"	282509	519	"L1HS,L1PA16"	LINE:dbRIP	IMMP2L		c7p110134064FS	ACTCATTTACATTACCACCAACAG	c7p110134064ES	ACACCGCATATTCTCACTCATAG
chr7	110670469	110670866	110883233	110883630	-	43	397	4	L1HS	"COLO1T,COLO1N"	275	516	"L1HS,AT_rich"	LINE:dbRIP	IMMP2L		c7p110670667FS	TGTATTTTACCAGGGAAGAAAAAG	c7p110670667ES	GATGAGTTCATATCCTTTGTAGGG
chr7	110695736	110695914	110908500	110908678	+	40	178	4	noL1	"COLO1T,COLO1N"	39	185	"AluJb,(A)n"		IMMP2L		c7p110695825FS	ACCAAGGACCAGAAAAGATAATAG	c7p110695825ES	GAATTAGACAAAAGTCTCTGTCCC
chr7	111396455	111397105	111609219	111609869	+	9369	650	28	L1HS	"COLO1T,COLO1N"	24550	650	L1HS		"KIAA0716,DOCK4"		c7p111396780FS	GAGAAAGGAAGAGACAGAAGAATG	c7p111396780ES	TGGGAGATATACCTAATGCTAGATG
chr7	112576479	112576836	112789243	112789600	-	5929	357	22	noL1	"COLO1T,COLO1N"	15693	499	"L2c,MLT1I"	"LINE:Ewing,Iskow,Stewart"			c7p112576657FS	CTGTAGAGGAGAGGAGTAAAGCAG	c7p112576657ES	AATTGTGTAAAATTGGTGAGTGTG
chr7	112926609	112927074	113139373	113139838	+	16319	465	44	L1HS	"COLO1T,COLO1N"	48772	474	"L1HS,L2c"				c7p112926841FS	CCCTAATGAACCTTAACATTTCAC	c7p112926841ES	TCATTCTCAGTAAACTATCGCAAG
chr7	112966691	112967024	113179455	113179788	+	27	333	4	L1PA2	"COLO1T,COLO1N"	104	337	"L1M2a,L1PA2"				c7p112966857FS	TATATCCATCCATTGTTGAAAGTG	c7p112966857ES	TCAGGGATCTAGAACTGGAAATAC
chr7	113002479	113002649	113215243	113215413	+	19	170	2	noL1	"COLO1T,COLO1N"	8	65	"AluJo,L1MC4"				c7p113002564FS	TTATATGTACTTAAATGCATGCCC	c7p113002564ES	ATTATGACAAATCAACATCGTGTG
chr7	113202895	113203470	113415659	113416234	-	134410	575	99	L1HS	"COLO1T,COLO1N"	336370	577	"L2c,L1HS"	LINE:dbRIP			c7p113203182FS	GTGATATTCCTGTTTTTCCTGTTC	c7p113203182ES	TGGGAGATATACCTAATGCTAGATG
chr7	113298416	113298880	113511180	113511644	+	849	464	11	L1PA2	"COLO1T,COLO1N"	754	393	"L1PA2,L1MA5"				c7p113298648FS	ATATGGTATTTGTCTTTCTGTGCC	c7p113298648ES	TACAAGAAACTGAAACAACTCAGC
chr7	114419085	114419517	114631849	114632281	-	12	432	3	noL1	"COLO1T,COLO1N"	2	719	L1PA5		MDFIC		c7p114419301FS	GCACCATGTATTAAATAGGGAATC	c7p114419301ES	AAGAGCTATTTATGACAAACCCAC
chr7	114594924	114595049	114807688	114807813	-	12	125	4	L1PA3	"COLO1T,COLO1N"	7	84	L1PA15-16				c7p114594986FS	AGGTATTCCTGACTCATAGGTTTG	c7p114594986ES	TAGACTGGATTAAGAAAATTTGGC
chr7	115187072	115187419	115399836	115400183	+	189	347	4	L1PA2	"COLO1T,COLO1N"	612	113	"MIR,AT_rich"				c7p115187245FS	AAAATCCATCTAAAAATCACATGC	c7p115187245ES	TGGGAGATATACCTAATGCTAGATG
chr7	116596035	116596408	116808799	116809172	-	116	373	4	noL1	"COLO1T,COLO1N"	346	407			ST7		c7p116596221FS	TCAACTAGAATCAAAATGAACCAG	c7p116596221ES	ACTATAATCCCAGCACTTTGAGAG
chr7	116956760	116957256	117169524	117170020	+	12592	496	33	L1HS	"COLO1T,COLO1N"	37718	776	"L1HS,L2,MIRb"		CFTR		c7p116957008FS	GTCCATCGAATTTATTACCACTTC	c7p116957008ES	TCATTCTCAGTAAACTATCGCAAG
chr7	117260019	117260172	117472783	117472936	-	20	153	2	noL1	"COLO1T,COLO1N"	32	159	"MER74A,AluSx3"		CTTNBP2		c7p117260095FS	ATAACACTCCTTCAGTCAACCTTC	c7p117260095ES	GTTTGAATAATTTCAGCAGATTCC
chr7	117412848	117413078	117625612	117625842	+	11	230	5	L1PA3	"COLO1T,COLO1N"	12	272	"AT_rich,AluSp"				c7p117412963FS	CATACGTCCATGAAGTTAGAATTG	c7p117412963ES	TCATCATTCTCAGTAAACTGTTGC
chr7	118919931	118920133	119132695	119132897	+	13	202	2	L1PA3	"COLO1T,COLO1N"	61	548	"AT_rich,L1PA4"				c7p118920032FS	TTTTAATGATGGTAGGCAGATTTC	c7p118920032ES	CGTATGTTTATTGTGGCACTATTC
chr7	119083802	119084059	119296566	119296823	-	27	257	3	L1HS	"COLO1T,COLO1N"	382	339	"L1MA9,L1HS,(T)n"				c7p119083930FS	TCCTACCCTTGATAATTAGGTTTG	c7p119083930ES	AAATGTCAAACAATGATAGACTGG
chr7	121698930	121699257	121911694	121912021	+	782	327	6	noL1	"COLO1T,COLO1N"	11031	153	L1ME2z				c7p121699093FS	AGGATGAATATCTGTGTGGGTC	c7p121699093ES	TAGCAGTTTTATTCAAAATAGCCC
chr7	121706120	121706487	121918884	121919251	-	108	367	4	L1PA2	"COLO1T,COLO1N"	334	369	"L1PA2,L1PA16"				c7p121706303FS	TCATAAATTATTTCCCAAGGTTTC	c7p121706303ES	AACTAGAAATACCATTTGACCCAG
chr7	122108532	122108933	122321296	122321697	+	311	401	6	L1PA3	"COLO1T,COLO1N"	1570	404	L1PA3		CADPS2		c7p122108732FS	AAAACAGGATGTAAGAAGGCATAG	c7p122108732ES	TCATTCTCAGTAAACTATCGCAAG
chr7	123424048	123424515	123636812	123637279	+	20	467	6	noL1	"COLO1T,COLO1N"	84	467	"(A)n,AluYb8"		"BC041947,L13779"		c7p123424281FS	AAGTTTTGTCTCTACCACTCAAGG	c7p123424281ES	TTGGAAAGTCTAGTCCATAGTTCC
chr7	124259243	124259345	124472007	124472109	+	33	102	2	noL1	"COLO1T,COLO1N"	247	107	"AluJb,L1ME3C"		"DKFZp586D211,POT1"		c7p124259294FS	TTGATTCTTCTTTTTATTTTTGGG	c7p124259294ES	CACTGAACTCATTTTATGACAAGG
chr7	126995583	126995766	127208347	127208530	+	17	183	2	noL1	"COLO1T,COLO1N"	23	185	L1PA3				c7p126995674FS	GCTCAAGGATAGATTTGAACTCAG	c7p126995674ES	ATTAAAAAGTCAGGAAACAACAGG
chr7	129294738	129295345	129507502	129508109	+	3400	607	28	L1HS	"COLO1T,COLO1N"	11072	697	"L1HS,(A)n"		UBE2H		c7p129295041FS	TTTGTATTTTTAGTAGAGACGGGG	c7p129295041ES	TGGGAGATATACCTAATGCTAGATG
chr7	129908476	129909228	130121240	130121992	+	51467	752	33	L1HS	"COLO1T,COLO1N"	314643	799	"T-rich,L1HS"	LINE:dbRIP			c7p129908852FS	CTAGATAAGGAGCAAGGAGAGTTC	c7p129908852ES	AAAAAGAAATTCTGGGTTTTGTTC
chr7	130036898	130037423	130386358	130386883	-	726	525	29	L1HS	"COLO1T,COLO1N"	2126	707	"(TTG)n,L1HS,L1MB5,T-rich"				c7p130037160FS	ACAATATGTGATCTTTGGTGTCTG	c7p130037160ES	TCATTCTCAGTAAACTATCGCAAG
chr7	130227568	130227760	130577028	130577220	+	451	192	13	L1HS	"COLO1T,COLO1N"	108	346	"L1HS,AT_rich,(A)n"		"CR618431,AK095549"		c7p130227664FS	TCAAAGGTATCCTAGTTTTTCAGG	c7p130227664ES	TAATCCAAAAGCAGGTTAATTCTC
chr7	130347088	130347436	130696548	130696896	+	17	348	3	noL1	"COLO1T,COLO1N"	34	351	AT_rich		"CR622681,AK125651,BC039420"		c7p130347262FS	TAATGTAGGTTCCAATCTGCTAGG	c7p130347262ES	GCCAGCTACTAGTTTGCACTG
chr7	132755077	132755252	133104537	133104712	-	11	175	2	L1PA2	"COLO1T,COLO1N"	30	187	MLT1E1A		EXOC4		c7p132755164FS	CTAACAGTAAAGGAATTGACCACC	c7p132755164ES	TCATTCTCAGTAAACTATCGCAAG
chr7	134000891	134001186	134350351	134350646	+	3406	295	16	L1HS	"COLO1T,COLO1N"	6774	537	"AluSz6,L1HS,(A)n,(TTTTTA)n"	LINE:dbRIP	BPGM		c7p134001038FS	TAAAGCCTGTTTATGGTAATAGGG	c7p134001038ES	GATGAGTTCATATCCTTTGTAGGG
chr7	136015280	136015616	136364740	136365076	-	29	336	5	L1PA3	"COLO1T,COLO1N"	61	199	L1PA3				c7p136015448FS	CACAATAAAAACAACCACAACAAC	c7p136015448ES	TCATTCTCAGTAAACTATCGCAAG
chr7	136097859	136098078	136447319	136447538	-	69	219	9	L1PA3	"COLO1T,COLO1N"	210	356	MER5A				c7p136097968FS	CATTTAACCAATGCCTTTAAGTTC	c7p136097968ES	TCATTCTCAGTAAACTATTGCACG
chr7	136522969	136523094	136872429	136872554	+	806	125	6	L1PA3	"COLO1T,COLO1N"	1075	668					c7p136523031FS	AATGGTTAAATTTTGGAACTTTTG	c7p136523031ES	ACAATGAGATCACATAGACACAGG
chr7	137947647	137947759	138297107	138297219	+	191	112	16	noL1	"COLO1T,COLO1N"	701	112	"SVA_F,(A)n"		SVOPL		c7p137947703FS	ATAGGAAAACATGGTAAACCTGAC	c7p137947703ES	TAGAAAGAGGTAGACATGGGAGAC
chr7	138531300	138531511	138880760	138880971	-	18	211	3	noL1	"COLO1T,COLO1N"	49	70	"FLAM_C,AluSx3,L1MC5"				c7p138531405FS	TTTGTATTTTTAGTAGAGACGGGG	c7p138531405ES	GTTCAACAATCCTACATGGAATC
chr7	140407873	140408324	140761404	140761855	-	31190	451	39	L1HS	"COLO1T,COLO1N"	93948	453	"L1HS,(T)n,L1MC4a"				c7p140408098FS	CATCTAGAGTGGCTCTATCAGCTC	c7p140408098ES	TCATTCTCAGTAAACTATCGCAAG
chr7	141227851	141228474	141581382	141582005	-	3093	623	25	L1HS	"COLO1T,COLO1N"	6534	758	"L1HS,L1M1,(T)n,L1P4a"				c7p141228162FS	ATTCATTCACCCCTTACTTAGTTG	c7p141228162ES	TAATGCTAGATGACACGTTAGTGG
chr7	141266679	141267000	141620210	141620531	-	6539	321	18	L1HS	"COLO1T,COLO1N"	34256	404	"L2a,L1HS,AT_rich"	LINE:dbRIP			c7p141266839FS	GTAGTGATAGCTATGGGGTACAGG	c7p141266839ES	GATGAGTTCATATCCTTTGTAGGG
chr7	142528812	142529204	142818690	142819082	+	156	392	5	noL1	"COLO1T,COLO1N"	168	259	"AluSx1,MLT2A1,MER101-int"	"LINE:Beck,Ewing,Iskow,Stewart"			c7p142529008FS	AGTGCAGTGTTTTGTTTTGTTTTC	c7p142529008ES	ATTTAGGGATAATAAAATGGGAGG
chr7	143447017	143447440	143816084	143816507	-	16	423	4	L1PA3	"COLO1T,COLO1N"	50	419	L1PA3				c7p143447228FS	AGGACAGACAGGATTTCACAGTAG	c7p143447228ES	TCATTCTCAGTAAACTATCGCAAG
chr7	144013585	144013771	144382652	144382838	-	24	186	10	L1HS	"COLO1T,COLO1N"	62	191	"L1HS,L1MEg"	LINE:dbRIP	"TPK1,hTPK1"		c7p144013678FS	TTATTTGGAATTAACTGTGCTTCC	c7p144013678ES	AGCAACAGATTATCAGAAAAGACC
chr7	144694261	144694731	145063328	145063798	+	5657	470	12	L1HS	"COLO1T,COLO1N"	28591	623	"L1HS,MLT2F"	LINE:dbRIP			c7p144694496FS	GAAAAGTTTTGGAAAGAGAAAATG	c7p144694496ES	ATTCATGTTCCTTTAATGTCCTTC
chr7	145341320	145341622	145710387	145710689	-	25	302	3	L1PA2	"COLO1T,COLO1N"	297	326	"L1PA2,L1MEg"				c7p145341471FS	TTTAATAGGAACGGAGATTTCATC	c7p145341471ES	TCATCATTCTCAGTAAACTATCGC
chr7	146299215	146299626	146668282	146668693	+	317	411	9	L1PA3	"COLO1T,COLO1N"	960	453	"L1PA3,MLT1A0"		CNTNAP2		c7p146299420FS	TATGGGAAGTGATTAAGTCACAAG	c7p146299420ES	ACACTGCATATTCTCACTCATAGG
chr7	147170202	147170667	147539269	147539734	-	415	465	17	L1HS	"COLO1T,COLO1N"	1070	467	"T-rich,L1HS,MIR,AT_rich"		CNTNAP2		c7p147170434FS	ACAGTTTATATTGGTCAAAGTTGC	c7p147170434ES	TCATTCTCAGTAAACTATCGCAAG
chr7	149885761	149886198	150254828	150255265	+	34	437	8	noL1	"COLO1T,COLO1N"	28	314	"L1PA3,L1MEc"				c7p149885979FS	CGGCTGTTTCTTATTAGTGTTATG	c7p149885979ES	AACTAGAAATACCATTTGACCCAG
chr7	151890452	151891121	152259519	152260188	+	12	669	2	noL1	"COLO1T,COLO1N"	21	72	"AluSq2,FLAM_C,AluSx1"				c7p151890786FS	GCTCTGAGAGAGCTACTTTTGTTC	c7p151890786ES	AACCTTGGAAGATATAATGGATTG
chr7	153785946	153786528	154155013	154155595	+	60936	582	39	L1HS	"COLO1T,COLO1N"	203230	583	"THE1B,L1HS,MLT1D"		DPP6		c7p153786237FS	TCTGGAGACTGGAAGTCTAAAATC	c7p153786237ES	ACACCGCATATTCTCACTCATAG
chr7	154056376	154056704	154425443	154425771	-	55	328	5	L1PA4	"COLO1T,COLO1N"	209	835	L1PA4		DPP6		c7p154056540FS	TTTTTGTAGAGATGGAGTTTCACC	c7p154056540ES	ATGATGAGTTCATGTCCTTTGTAG
chr7	155641064	155641173	155948303	155948412	+	11	109	4	noL1	"COLO1T,COLO1N"	38	71	(A)n				c7p155641118FS	CTGGACTATGTCTATACCCACACC	c7p155641118ES	GTAGACGTAGAACAAGTGGGGAC
chr7	156122021	156122236	156429260	156429475	+	11	215	3	L1PA3	"COLO1T,COLO1N"	26	74	L1PA3				c7p156122128FS	CTGGTCTTGAACTTCTGACCTC	c7p156122128ES	CACTCCAATGTATAAAACCATCAG
chr7	157027931	157028119	157335170	157335358	+	1429	188	7	noL1	"COLO1T,COLO1N"	2631	281		LINE:Stewart	"PTPRN2,KIAA0387"		c7p157028025FS	TCTAGAGCATGGTTCTAGGTGATAC	c7p157028025ES	TAAATACACAACAGCCATTCAGAC
chr7	158789910	158790162	159097149	159097401	+	88	252	3	L1PA4	"COLO1T,COLO1N"	369	254	"L1PA4,L1ME3E"				c7p158790036FS	ACAGGGCTTCAAATATTCTTACAC	c7p158790036ES	CAAATGTCCAACAATGATAGACTG
chr8	2644529	2644821	2657122	2657414	-	14	292	5	L1PA3	"COLO1T,COLO1N"	112	346	"L1MEe,L1PA3"				c8p2644675FS	TAATTTTTCATCCTTTCTGCTTTC	c8p2644675ES	GGGAAATCATCATTCTCAGTAAAC
chr8	2852944	2853104	2865537	2865697	+	656	160	11	L1PA3	"COLO1T,COLO1N"	2119	320			"KIAA1890,CSMD1"		c8p2853024FS	GTTTCTGAGTGTTCACTCTACTGG	c8p2853024ES	TCATTCTCAGTAAACTATCGCAAG
chr8	4930238	4930464	4942830	4943056	+	13	226	2	L1PA2	"COLO1T,COLO1N"	26	65	"L1PA2,L1PA4"				c8p4930351FS	TTAAGTAGACAAATGGAGTTTCTGG	c8p4930351ES	ATGAATAGAATGGCTACTCAAAGG
chr8	5816307	5816655	5828899	5829247	-	831	348	13	noL1	"COLO1T,COLO1N"	3669	708	AluSx1				c8p5816481FS	CTTATAAAACCATCACATCTCGTG	c8p5816481ES	TTTGTAAAATATAACACAGGTCGG
chr8	5929735	5930759	5942327	5943351	-	735	1024	17	L1PA4	"COLO1T,COLO1N"	5233	1303	"AluJb,(TG)n,L1PA4"				c8p5930247FS	CGATATATGTTCAATGTCGTAAGG	c8p5930247ES	CAAAGAGAGACTGAGGAGTAGAGG
chr8	8371762	8372424	8334352	8335014	+	33	662	11	L1HS	"COLO1T,COLO1N"	66	220	"L1HS,AluSq2,(TC)n"				c8p8372093FS	AAGGAACTGTTAGATTTGTGTTCC	c8p8372093ES	CTAATGATAGATGACACGTTGGTG
chr8	9634941	9635429	9597531	9598019	+	23816	488	33	L1HS	"COLO1T,COLO1N"	75452	501	L1HS		TNKS		c8p9635185FS	TATTTGTTGCTCAGAGAAATTGAG	c8p9635185ES	TGGGAGATATACCTAATGCTAGATG
chr8	10387223	10387678	10349813	10350268	-	17	455	2	noL1	"COLO1T,COLO1N"	5	455	L1PA4		AK307207		c8p10387450FS	GTATCTCATTGTGGTTTTGATTTG	c8p10387450ES	ATCAAGCTACCAATGACTTTCTTC
chr8	10777556	10777733	10740146	10740323	+	69	177	2	noL1	"COLO1T,COLO1N"	213	178	(A)n				c8p10777644FS	GAGAAACCTAGGCAGGAGTATTTC	c8p10777644ES	CATTAAAGTCTGTTACTGCACTGG
chr8	11493431	11493804	11456022	11456395	+	210	373	5	noL1	"COLO1T,COLO1N"	263	373	"AluSx,MLT1B"				c8p11493617FS	TTTCCTCTTTGAATCCACACTATC	c8p11493617ES	GTCCTCATAAGGAAAGGAGATTG
chr8	13517293	13517941	13472922	13473570	+	199	648	2	noL1	"COLO1T,COLO1N"	349	655	"AT_rich,AluYb8"				c8p13517617FS	TACTTTCCAAAACAAAAATATGGG	c8p13517617ES	GAAACCCCGTCTCTACTAAAAATAC
chr8	14710874	14711269	14666503	14666898	+	40	395	4	L1PA3	"COLO1T,COLO1N"	138	189	"L1PA3,AT_rich"		SGCZ		c8p14711071FS	TAAGGAAATAAAATGGAGAATTGG	c8p14711071ES	AACTAGAAATACCATTTGACCCAG
chr8	15174702	15174803	15130331	15130432	+	16	101	3	noL1	"COLO1T,COLO1N"	134	795	"L1MA9,AluSq"				c8p15174752FS	TTACACTTTTTGTGGTTTTCACAC	c8p15174752ES	AAAATGTGATCAAAATGTGAAGTG
chr8	16789021	16789302	16744650	16744931	+	250	281	14	L1PA3	"COLO1T,COLO1N"	1364	392	"L1PA3,L2c"				c8p16789161FS	CTGGAAAAGTAGAACTTGATAGGG	c8p16789161ES	TTTGTAGAGACATGGATGAAATTG
chr8	17898994	17899278	17854714	17854998	-	38	284	4	noL1	COLO1T	0	0	L1MA2		PCM1		c8p17899136FS	CATGTCTTGAAAAGTTGTTGTAGC	c8p17899136ES	AATTCTAGAGTTGAAAAACGCAAC
chr8	17903564	17903920	17859284	17859640	-	71	356	16	L1HS	"COLO1T,COLO1N"	91	366	"L1HS,(T)n"	LINE:dbRIP	PCM1		c8p17903742FS	TTTCATTTAACAACATTGATCAGG	c8p17903742ES	GATGAGTTCATATCCTTTGTAGGG
chr8	18500165	18500622	18455885	18456342	+	1193	457	20	L1HS	"COLO1T,COLO1N"	3354	457	"L1M3,L1HS"	"LINE:dbRIP,Ewing"	"PSD3,DKFZp686A1849"		c8p18500393FS	TTATTGAATATGTAGGTCGCTGTG	c8p18500393ES	TCATTCTCAGTAAACTATCGCAAG
chr8	18812390	18812923	18768110	18768643	+	85316	533	44	L1HS	"COLO1T,COLO1N"	299396	533	"AluJr,L1HS"		PSD3		c8p18812656FS	TAGGCTATACTTCTGGCTTTGTTC	c8p18812656ES	TGGGAGATATACCTAATGCTAGATG
chr8	20446937	20447042	20402657	20402762	-	14	105	4	noL1	"COLO1T,COLO1N"	15	104	(T)n				c8p20446989FS	GGCTTACACCTATATTCCTAGCAC	c8p20446989ES	TGAACCTCCTTAAAGAGTACAAGC
chr8	23261456	23261880	23205511	23205935	+	12	424	3	noL1	"COLO1T,COLO1N"	4	202	L1PA6		"LOXL2,AL833246"		c8p23261668FS	TTTGTTTCTTAGAAGATCTCGCTC	c8p23261668ES	TATAATCCTCGTGCTTTGAGAAAC
chr8	24367430	24367721	24311540	24311831	-	14	291	2	noL1	"COLO1T,COLO1N"	23	291	L1PA3		ADAM7		c8p24367575FS	ATAGAGTTTCCAGTTTTTCTGCTC	c8p24367575ES	CTAGTCAAAGAAAGGGGTGACAG
chr8	24549947	24550506	24494057	24494616	+	47	559	2	noL1	"COLO1T,COLO1N"	181	559	"L1PA3,L1MC1,AluY"				c8p24550226FS	TTCATCTTCTCCTTGAGGTAAAAC	c8p24550226ES	GAAACCCTGTCTCTACTGAAAATAC
chr8	24750196	24750601	24694306	24694711	-	37	405	16	L1HS	"COLO1T,COLO1N"	104	641	"L1MEf,L1HS"				c8p24750398FS	AAGAATATGTAATCCCATGTCACC	c8p24750398ES	GTGTAAACACAAAAATGCCATAAG
chr8	24982033	24982434	24926116	24926517	-	72	401	7	noL1	"COLO1T,COLO1N"	269	385		"LINE:Ewing,Iskow,Stewart"			c8p24982233FS	AGTAAATTCTGTCTCCCCAGTAAG	c8p24982233ES	CTGGAAAATGGGAATAACAGTAAC
chr8	25439751	25439867	25383834	25383950	+	2258	116	15	L1PA7	"COLO1T,COLO1N"	6007	94	"AluY,L1PA7"		PPP2R2A		c8p25439809FS	GTACCAGCTCCTCTTTGTACCTC	c8p25439809ES	AGAAGTAGCACTAAATTCCCACAG
chr8	26578782	26578910	26522865	26522993	-	11	128	3	noL1	"COLO1T,COLO1N"	8	122	L2				c8p26578846FS	CATGGTCACTGACTTCAACTTAAC	c8p26578846ES	TGAAAGTAGAGGAAATTGCTTAGG
chr8	26588875	26589271	26532958	26533354	-	63	396	4	L1PA3	"COLO1T,COLO1N"	384	677	L1MB3				c8p26589073FS	ACTGAAACTCTGTCCTCATTAAGC	c8p26589073ES	TCATTCTCAGTAAACTATCGCAAG
chr8	26960450	26960782	26904533	26904865	+	11	332	2	noL1	"COLO1T,COLO1N"	248	68	"L2a,AluSz6"				c8p26960616FS	GATAAATCAGTTTTGGGCATTAAC	c8p26960616ES	ACTGTTCAATAATAGGAAGCCAAG
chr8	27033025	27033546	26977108	26977629	+	74641	521	42	L1HS	"COLO1T,COLO1N"	398468	612	"L1HS,MIR,LOR1a"				c8p27033285FS	TAATCAGACTCAGGGATTTTTCTC	c8p27033285ES	TCATTCTCAGTAAACTATCGCAAG
chr8	28205371	28205793	28149452	28149874	-	22	422	5	L1HS	"COLO1T,COLO1N"	63	434	"L1HS,(TTTA)n,L3"				c8p28205582FS	ATCATATTTGCTTCCTCATTTTTC	c8p28205582ES	TCATTCTCAGTAAACTATCGCAAG
chr8	28532654	28533337	28476735	28477418	+	50	683	9	noL1	"COLO1T,COLO1N"	110	685	"MER63B,(A)n,AluY"				c8p28532995FS	GCCTGTAGTCCCAGCTACTCG	c8p28532995ES	CACCTGGATACCAAGTCTCTAAAC
chr8	29033084	29033665	28977165	28977746	-	117087	581	43	L1HS	"COLO1T,COLO1N"	357487	588	L1HS		"KIF13B,AF086219"		c8p29033374FS	ACATCCAAAGTTCCTTTTCTAGG	c8p29033374ES	TAATGCTAGATGACACGTTAGTGG
chr8	29408460	29408977	29352541	29353058	+	1160	517	11	noL1	"COLO1T,COLO1N"	4633	448	MLT1C				c8p29408718FS	ACCTATGTTTTAATTTCCTAGGGC	c8p29408718ES	AATTGAATTTACTTCACCAGCTTC
chr8	31753347	31753634	31633805	31634092	-	27	287	3	L1PA4	"COLO1T,COLO1N"	904	293	L1PA4		NRG1		c8p31753490FS	TAAATGAATAGTAGAAAGCCTGCC	c8p31753490ES	ATGATGAGTTCATGTCCTTTGTAG
chr8	32602829	32603484	32483287	32483942	-	18	655	4	noL1	"COLO1T,COLO1N"	15	655	"AluY,AluSz"		"NRG1,HRG"		c8p32603156FS	TTAAGGTCAAATAGCAAGTGAGTG	c8p32603156ES	TTTTGTATTTTTAGTAGCGATGGG
chr8	32792743	32793590	32673201	32674048	-	2256	847	21	L1HS	"COLO1T,COLO1N"	4786	747	"MSTB1,AT_rich,L1MA4A,L1HS"				c8p32793166FS	TATGTTTCATAGCAGATTAGGGTG	c8p32793166ES	AACAATGAGATCACATGGACATAG
chr8	33238472	33238907	33118930	33119365	-	867	435	24	L1HS	"COLO1T,COLO1N"	1998	440	"L1HS,(T)n"				c8p33238689FS	TGCCCAACTAATTTTGTATTTTTAG	c8p33238689ES	TCATTCTCAGTAAACTATCGCAAG
chr8	40414883	40415133	40295726	40295976	+	3496	250	9	L1PA2	"COLO1T,COLO1N"	7247	524	"L1PA3,L1PA2,A-rich"				c8p40415008FS	GTATGTAACCCGTGATAACTTTCC	c8p40415008ES	ATACACCATTGAATACTATGCAGC
chr8	40839217	40839897	40720060	40720740	+	208982	680	33	L1HS	"COLO1T,COLO1N"	488131	799	"L2,L1HS,L1PA5"		ZMAT4		c8p40839557FS	CTTCACATGGTTTAATCTACATGC	c8p40839557ES	CTAATGCTAGACGACACGTTAGTG
chr8	41480750	41481309	41361593	41362152	+	78290	559	56	L1HS	"COLO1T,COLO1N"	211436	559	L1HS		"gcp16,GOLGA7"		c8p41481029FS	ATGTCACAATTTAGATGCTTTGG	c8p41481029ES	TTAGGATTGACTTGGCATATTCTC
chr8	41947849	41948148	41828692	41828991	+	51	299	10	L1PA5	"COLO1T,COLO1N"	252	497	"L2a,L1PA5"		MYST3		c8p41947998FS	ATAATTGCCTCCAGACTAAACTTG	c8p41947998ES	ATCATCATTCTCAGCAAATTATTG
chr8	42238951	42239141	42119794	42119984	+	78	190	6	L1PA2	"COLO1T,COLO1N"	316	190	"L1PA2,MER34B-int,(GAAAA)n,AluY"				c8p42239046FS	ATCACTAGAGCCCAGAAAATTGAG	c8p42239046ES	CATTTTTAGGACACAAAAGGAGAC
chr8	43329935	43330246	43210778	43211089	-	33	311	4	noL1	"COLO1T,COLO1N"	21	449	"L1MA10,AluSx1"		POTEA		c8p43330090FS	TTTACTTCTACCAGTGTCCTTTCC	c8p43330090ES	AGACAATGAACCCTGTAAGATAGG
chr8	43345186	43345810	43226029	43226653	-	40899	624	83	L1HS	"COLO1T,COLO1N"	129199	832	"L1HS,AluSx1,L1MEc"				c8p43345498FS	ATCTAGTCAGTATTTGCTTCCACC	c8p43345498ES	TAATGCTAGATGACACGTTAGTGG
chr8	43365157	43365339	43246000	43246182	-	1626	182	12	L1PA2	"COLO1T,COLO1N"	9812	313	L1PA16				c8p43365248FS	TAGCTAAGATTACAGACATGTGCC	c8p43365248ES	TGGAAATCATCATTCTCAGTAAAC
chr8	43944978	43945338	43825821	43826181	-	34	360	2	noL1	"COLO1T,COLO1N"	39	403	ALR/Alpha				c8p43945158FS	AAACACTCTTTTTGGAGTATCTGG	c8p43945158ES	CAAAACTGCTGTATCAAAAGAATG
chr8	43946281	43946911	43827124	43827754	-	41	630	3	noL1	"COLO1T,COLO1N"	51	628	ALR/Alpha	Alu:Hormozdiari			c8p43946596FS	AGCACTTTTGAAACACTCTTTTTG	c8p43946596ES	ATTACTTCTATCTCGCATTCATGG
chr8	43947893	43948123	43828736	43828966	-	13572	230	12	noL1	"COLO1T,COLO1N"	30738	118	ALR/Alpha				c8p43948008FS	GTGTGTTCTCCACTAACAGAGTTG	c8p43948008ES	CTCTGTGACTTGAATGGAAATATG
chr8	43949389	43950083	43830232	43830926	-	12	694	2	noL1	"COLO1T,COLO1N"	86	67	ALR/Alpha				c8p43949736FS	CATTCTTTTGATACAGCAGTTTTG	c8p43949736ES	ATAGCTTCTATGTCGCTTTTATGG
chr8	46960253	46960905	46841088	46841740	-	13	652	3	noL1	"COLO1T,COLO1N"	18	186	ALR/Alpha				c8p46960579FS	AAGGAAATATCTTCCGACAAAAAC	c8p46960579ES	GAATCTTCAAAAAGAGTGTTCCAG
chr8	46962800	46963203	46843635	46844038	-	24	403	3	noL1	"COLO1T,COLO1N"	73	254	ALR/Alpha				c8p46963001FS	AAACACTCTTTTTGGAGTATCTGG	c8p46963001ES	TGTATCAAAAGAATGGATCAACAC
chr8	46965857	46966043	46846692	46846878	-	44	186	5	noL1	"COLO1T,COLO1N"	67	219	ALR/Alpha				c8p46965950FS	CTAGCCAGAAGCATTCTAAGAAAC	c8p46965950ES	ATTTCCTTTTTCACCATAGTTCAG
chr8	48406589	48407170	48244036	48244617	-	3585	581	40	L1HS	"COLO1T,COLO1N"	10880	581	"AluSz6,L1HS,AT_rich,Tigger3b"		KIAA0146		c8p48406879FS	TTATTAGGTGATTTTGTCCTTGTG	c8p48406879ES	TGGGAGATATACCTAATGCTAGATG
chr8	48702537	48702643	48539984	48540090	+	133	106	3	L1PA4	"COLO1T,COLO1N"	238	387			KIAA0146		c8p48702590FS	TGAAAACACAAATGCTAACTTCTC	c8p48702590ES	ATAGACTGGATTAAGCAAATGTGG
chr8	52765052	52765321	52602499	52602768	-	80	269	4	L1PA3	"COLO1T,COLO1N"	514	279	L1PA3		PXDNL		c8p52765186FS	TTTTCCCTAATAAGGTAACTGCTC	c8p52765186ES	TCATTCTCAGTAAACTATCGCAAG
chr8	54858388	54858758	54695835	54696205	-	117	370	2	noL1	"COLO1T,COLO1N"	41	370	L1PA4		ATP6V1H		c8p54858573FS	ATTGGAATAGTTTCAGAAGGAATG	c8p54858573ES	CACAGTGCAATCAAACTAGAACTC
chr8	57324478	57324866	57161924	57162312	+	451	388	5	noL1	"COLO1T,COLO1N"	2468	323	"L1MEd,CT-rich"				c8p57324672FS	AAAACTTAGATGAGACAGCCAAAC	c8p57324672ES	GAAACCCCGTCTCTACTAAAAATAC
chr8	57496315	57496555	57333761	57334001	+	16	240	6	L1PA3	"COLO1T,COLO1N"	59	345	"L1PA3,MIR"				c8p57496435FS	AAATTCAGTGGGTAAAAATAGTGG	c8p57496435ES	TCACAAGAACAAAATACCAAACAC
chr8	58510458	58510975	58347904	58348421	+	814	517	5	noL1	"COLO1T,COLO1N"	304	447	"HAL1,L1MB7"	"LINE:Ewing,Iskow"			c8p58510716FS	ACAAAGTGCCACATATTGTATGAC	c8p58510716ES	CTTAGGATAAGACCTGAAGCTGAC
chr8	59559705	59559924	59397151	59397370	+	32	219	5	L1HS	"COLO1T,COLO1N"	71	333	"L1HS,MLT1B"				c8p59559814FS	TTTACAATGCAAACGTAAAGAAAG	c8p59559814ES	TCATTCTCAGTAAACTATCGCAAG
chr8	59995784	59996190	59833230	59833636	+	115	406	13	L1PA2	"COLO1T,COLO1N"	655	409	"L2a,L1PA2,(A)n,AT_rich"		TOX		c8p59995987FS	AAGTTTCAAAAACAGCCATTTTAC	c8p59995987ES	TTTGTAGGGACATGTATGAAATTG
chr8	60539237	60539697	60376683	60377143	-	32	460	2	L1PA4	"COLO1T,COLO1N"	105	65	"L1PA4,L1MEc"				c8p60539467FS	CCCATTTCTCCTTTAAGTTTTACC	c8p60539467ES	ATCCTCTTTTATTTCATTGAGCAG
chr8	60614215	60614325	60451661	60451771	+	16	110	2	L1PA3	"COLO1T,COLO1N"	74	260	L1MC3				c8p60614270FS	AGGGCTGATATTAACATTTCAAAG	c8p60614270ES	TCATTCTCAGTAAACTATCGCAAG
chr8	61631710	61631812	61469156	61469258	+	671	102	3	noL1	"COLO1T,COLO1N"	181	71	FLAM_A		RAB2A		c8p61631761FS	ACTTTCAGGTGTAGGACAGAAGAC	c8p61631761ES	TTAAAAAGTTGAGCTCATAAAGGC
chr8	62826927	62827037	62664373	62664483	-	40	110	7	noL1	"COLO1T,COLO1N"	129	109	"SVA_F,(T)n"				c8p62826982FS	AAATTTTCAGGTACGACACATAGC	c8p62826982ES	TGTGTAGAAAGAAGTAGACATGGG
chr8	62975177	62975406	62812623	62812852	+	608	229	3	noL1	COLO1T	0	0	MER50-int				c8p62975291FS	GTACACTAATGCAAAGGTCAAATC	c8p62975291ES	CAGGAACTGTGTAGACAAGGTATG
chr8	64872430	64872571	64709876	64710017	-	92	141	11	L1PA2	"COLO1T,COLO1N"	186	518	L1PA2				c8p64872500FS	AGGGAGATTTCATGTAAGTAATGC	c8p64872500ES	CAAATGTCCAACAATGATAGACTG
chr8	66466801	66467378	66304247	66304824	+	13887	577	40	L1HS	"COLO1T,COLO1N"	41916	767	"L2a,(TAAA)n,L1HS,MER20"				c8p66467089FS	AGGTTTTTCCTCTACTTTCATGTG	c8p66467089ES	TGGGAGATATACCTAATGCTAGATG
chr8	67098678	67099267	66936124	66936713	-	3779	589	20	L1HS	"COLO1T,COLO1N"	12014	505	L1HS		"DNAJC5B,DKFZp434M0927"		c8p67098972FS	ATATGAGCCTTCTGTGACTTATCC	c8p67098972ES	TAATGCTAGATGACACGTTAGTGG
chr8	67544095	67544403	67381541	67381849	-	803	308	18	noL1	"COLO1T,COLO1N"	3123	431	AluJb	"LINE:Ewing,Iskow"			c8p67544249FS	GGTGTGGAGAACTAAGAGAAAATG	c8p67544249ES	GGGAATAACCATGTAGGATGTTAG
chr8	68077510	68078246	67914956	67915692	-	12	736	4	noL1	"COLO1T,COLO1N"	14	734	"AluSq2,L1MEc"		LRRC67		c8p68077878FS	TTGTTTGTTTTGTTTTGAGATAGG	c8p68077878ES	ACTTTTTCAGACCTTGGACAATAG
chr8	70206779	70207209	70044225	70044655	+	22	430	5	noL1	"COLO1T,COLO1N"	44	449	"THE1A,L1PA5"				c8p70206994FS	CTCAAGAGATCTGATGGGTTTATC	c8p70206994ES	CAATTCTGACTAAAAATCACCCTG
chr8	71745636	71746181	71583082	71583627	-	59753	545	49	L1HS	"COLO1T,COLO1N"	215605	762	"L1HS,L1MA4A,AluJr4"	LINE:dbRIP	XKR9		c8p71745908FS	AGTAACCAAATCTCCTACATCAGG	c8p71745908ES	TTCTCAGTAAACTATCGCAAGAAC
chr8	72175724	72176136	72013170	72013582	+	244	412	5	noL1	COLO1T	0	0		LINE:Stewart			c8p72175930FS	TTGTGTAAAACTCTCATAGTGCTTG	c8p72175930ES	AATCATTCATGTGGTGTCTATTTG
chr8	72561294	72561797	72398740	72399243	-	66047	503	28	noL1	"COLO1T,COLO1N"	58080	466	LTR79	"LINE:Ewing,Iskow,Stewart"	BC048982		c8p72561545FS	TACTGGAAAGAGAAGAAACTGAGG	c8p72561545ES	ATTTGAATTTCTGAGATTGTTTCC
chr8	72975246	72975473	72812692	72812919	+	23	227	12	L1PA3	"COLO1T,COLO1N"	123	233	"L1MD3,(TAA)n,L1PA3,L1M5"		"BX647470,AK123315"		c8p72975359FS	ACTAAGTTTAGCCTTCATCTGTGG	c8p72975359ES	TGGAAATCATCATTCTCAGTAAAC
chr8	73560249	73560529	73397695	73397975	+	1520	280	15	L1PA2	"COLO1T,COLO1N"	3894	708	"L1PA2,L1PA17"				c8p73560389FS	AGTATTTTCTTCTTTTTGTGGCTG	c8p73560389ES	TCATTCTCAGTAAACTATCGCAAG
chr8	73949943	73950389	73787389	73787835	-	554	446	7	L1HS	"COLO1T,COLO1N"	1503	585	"MER5A1,L1HS"	LINE:dbRIP	KCNB2		c8p73950166FS	ATAATTTGTTGCTTTCAAGAGTCC	c8p73950166ES	TCATTCTCAGTAAACTATCGCAAG
chr8	74856407	74856960	74693853	74694406	-	11	553	4	noL1	"COLO1T,COLO1N"	19	68	"AluJb,(T)n,MIRb,AluSc"		UBE2W		c8p74856683FS	TAAGTGTACTGACTTTCAGCATGG	c8p74856683ES	GAAACAAACTTTTGGGAATGATAC
chr8	75476375	75476786	75313820	75314231	-	16	411	4	noL1	"COLO1T,COLO1N"	15	71	L1PA3				c8p75476580FS	ATTTCATTCATTTCATCTTCCATC	c8p75476580ES	GTCTGACAGCTTTGAAGAGAGC
chr8	75886304	75886794	75723749	75724239	+	490	490	4	noL1	"COLO1T,COLO1N"	5349	347	MIRb	"LINE:Ewing,Iskow,Stewart"			c8p75886549FS	GTCAGCAGTGTAATCCCTTAACTC	c8p75886549ES	TATAGAGTTGTTTCCTTTCAACCC
chr8	76141047	76141414	75978492	75978859	-	11	367	2	noL1	"COLO1T,COLO1N"	4	67	L1PA3				c8p76141230FS	AAACCTGGGCTAGGATAAAAGTAG	c8p76141230ES	AACTAGAAATACCATTTGACCCAG
chr8	76695663	76696146	76533108	76533591	-	10808	483	47	L1HS	"COLO1T,COLO1N"	26345	495	"L1HS,(T)n"				c8p76695904FS	AAAATGGAAACCAAGACCATATAC	c8p76695904ES	TCATTCTCAGTAAACTATCGCAAG
chr8	77499508	77500000	77336953	77337445	-	14297	492	35	L1HS	"COLO1T,COLO1N"	60466	1096	"L1HS,MER85"	LINE:dbRIP			c8p77499754FS	AACTTTTGCTTCACTATTTTGTCAC	c8p77499754ES	TCATTCTCAGTAAACTATCGCAAG
chr8	78719830	78720236	78557275	78557681	-	51	406	8	L1PA3	"COLO1T,COLO1N"	346	194	"L1PA3,LTR16B1"				c8p78720033FS	ATATGTAAGGTGTACAGTCAGCCG	c8p78720033ES	TACCCAAAGGACTATAAATCATGC
chr8	80107149	80107255	79944594	79944700	+	37	106	5	L1PA4	"COLO1T,COLO1N"	215	245	"L1PA11,L1PA4"				c8p80107202FS	GATGACGGGATTAAGAGATTAAAG	c8p80107202ES	TATTGCATGCCTACTATGTTTCAC
chr8	80246164	80246594	80083609	80084039	-	12	430	6	L1HS	"COLO1T,COLO1N"	44	429	"L1HS,(T)n"				c8p80246379FS	AAACTGAGATGTATAAGGGTAGCG	c8p80246379ES	TCATTCTCAGTAAACTATCGCAAG
chr8	83732892	83733006	83570337	83570451	+	11	114	5	noL1	"COLO1T,COLO1N"	19	115	"(A)n,Tigger9a"				c8p83732949FS	ATATTAGAATGCCTTGGAAAAGAC	c8p83732949ES	GTATAACACTTCCAATCCCAGAAC
chr8	84919654	84919896	84757099	84757341	-	11	242	7	L1PA3	"COLO1T,COLO1N"	102	242	MIRc				c8p84919775FS	TTTAAGGAGAAGAAATCAGTCCAG	c8p84919775ES	TGGAAATCATCATTCTCAGTAAAC
chr8	85493945	85494299	85331390	85331744	-	41	354	7	L1PA2	"COLO1T,COLO1N"	285	390			RALYL		c8p85494122FS	AATAATTCCCAACATTTTCTTGTC	c8p85494122ES	AAAACAAATACCGCATATTCTCAC
chr8	87797362	87797698	87728246	87728582	+	50	336	9	L1PA3	"COLO1T,COLO1N"	172	354	L1PB1		CNGB3		c8p87797530FS	TTCTTTCATGATGCTTAGTTTCAC	c8p87797530ES	TTAAGCTAATCAAGGAGACACCAG
chr8	88402994	88403204	88333878	88334088	-	21	210	5	L1PA2	"COLO1T,COLO1N"	46	211	"L1MB1,L1PA2"		CNBD1		c8p88403099FS	CAATTTGTAGTTTTCTGGTTTGTG	c8p88403099ES	CAAATGTCCAACAATGATAGACTG
chr8	88450906	88451124	88381790	88382008	-	11	218	3	L1PA3	"COLO1T,COLO1N"	42	68	"L1MEf,L1PA3"		CNBD1		c8p88451015FS	TTTGGTTTCCTAGGTCAATTCTAC	c8p88451015ES	CAAATGTCCAACAATGATAGACTG
chr8	89426406	89427088	89357290	89357972	-	32954	682	81	L1HS	"COLO1T,COLO1N"	95148	682	"L1PA11,L1HS,(T)n"				c8p89426747FS	AGCAGTGGTTTATAGTTCTCCTTG	c8p89426747ES	TGGGAGATATACCTAATGCTAGATG
chr8	89430006	89430344	89360890	89361228	-	110	338	9	L1PA4	"COLO1T,COLO1N"	162	420	"L1PA11,L1PA4,(TTA)n"				c8p89430175FS	TCTGTATTCCTCAGTGTGTTTTTG	c8p89430175ES	GAGGGATAGCATTTGGAGATATAC
chr8	89773017	89773138	89703901	89704022	+	61	121	11	L1HS	"COLO1T,COLO1N"	570	169	"L1M2,L1HS"				c8p89773077FS	AACACCACATGTTCTCACTCATAG	c8p89773077ES	CAAATGTCCAACAATGATAGACTG
chr8	90473391	90473689	90404275	90404573	+	74	298	16	L1PA2	"COLO1T,COLO1N"	251	533	"L1PA2,AT_rich"				c8p90473540FS	TAAACTTTCTACTGTGCTCCACTG	c8p90473540ES	AAAAACCAAACACCACATATTCTC
chr8	90633335	90633741	90564219	90564625	-	12	406	5	L1PA2	"COLO1T,COLO1N"	15	405	"L2c,L1PA2,L1PA7"				c8p90633538FS	AACAGTCTATGCAGGGAGACTATC	c8p90633538ES	TCATTCTCAGTAAACTATCGCAAG
chr8	92603253	92603547	92534077	92534371	+	27704	294	51	L1HS	"COLO1T,COLO1N"	77338	294	"(CA)n,(TAAAAA)n,L1HS"				c8p92603400FS	GATGAGTTCATATCCTTTGTAGGG	c8p92603400ES	GAAATTGGAAACCATCATTCTTAG
chr8	92646034	92646500	92576858	92577324	+	58966	466	38	L1PA2	"COLO1T,COLO1N"	66955	559	"UCON10,L1PA2"				c8p92646267FS	TTGTTGAATATGTGTGAAAGAACC	c8p92646267ES	GAGGGATAGCATGGGAGATATAC
chr8	95131110	95131503	95061934	95062327	-	178	393	12	L1PA4	"COLO1T,COLO1N"	482	354	L1PA4				c8p95131306FS	GGTTGAAATGTTTAAAATCCAAAG	c8p95131306ES	ATGAAGCTGGAAACTATCATTCTC
chr8	95148435	95148927	95079259	95079751	-	461	492	3	L1PA2	"COLO1T,COLO1N"	1683	297	"L1PA2,L1MB2"				c8p95148681FS	ATTGCTCTCTTGAAGGTTTACATC	c8p95148681ES	TCATTCTCAGTAAACTATCGCAAG
chr8	96448857	96449802	96379681	96380626	-	47	945	7	L1PA2	"COLO1T,COLO1N"	1089	424	"L2c,L1PA2,(T)n"				c8p96449329FS	AGGGAAAGGTCTTCTTACTTTTTC	c8p96449329ES	AGAAAGCATTGTACTCCTTAGAGC
chr8	96451328	96451547	96382152	96382371	-	22	219	11	L1HS	"COLO1T,COLO1N"	124	336	"L1HS,L1PA2"				c8p96451437FS	TCAGGTTTGTCAAAGATCAGATAG	c8p96451437ES	CAAATGTCCAACAATGATAGACTG
chr8	96633336	96633615	96564160	96564439	-	1031	279	6	L1PA2	"COLO1T,COLO1N"	4641	467					c8p96633475FS	GTTTCCGACAAGATTCATTTATTC	c8p96633475ES	TCATTCTCAGTAAACTATCGCAAG
chr8	97980119	97980649	97910943	97911473	+	392231	530	108	L1HS	"COLO1T,COLO1N"	1804261	527	L1HS		PGCP		c8p97980384FS	CAATGTATATGTGAAAATGCATCC	c8p97980384ES	ATAATCAGGTGATTGTGAACTGTG
chr8	98382992	98383148	98313816	98313972	+	52	156	6	L1PA2	"COLO1T,COLO1N"	64	381	"(TAA)n,L1PA2,LTR33"				c8p98383070FS	TGAGAATAGTTTAAGCCAGAAAGG	c8p98383070ES	TTGTCAGTAAACTATCGCAAGAAC
chr8	98598027	98598313	98528851	98529137	+	450	286	6	L1PA2	"COLO1T,COLO1N"	1722	419	(TAAA)n				c8p98598170FS	TTCTTAGAAGAACCTGTTCCAAAG	c8p98598170ES	CCATCATTGTCAGTAAACTATTGC
chr8	100259189	100259621	100190013	100190445	-	26043	432	36	L1HS	"COLO1T,COLO1N"	34730	433	"L1HS,AT_rich,Eulor2A"		VPS13B		c8p100259405FS	AGAACAGAAAGTTTCCTTTGATTG	c8p100259405ES	AAGTACAAAATGCTATACAAGGGG
chr8	100301632	100302245	100232456	100233069	-	51033	613	31	L1HS	"COLO1T,COLO1N"	179873	620	"L1HS,MLT1K"		VPS13B		c8p100301938FS	AAAATGAGGCTTGTTTTTAGTGAC	c8p100301938ES	TGGGAGATATACCTAATGCTAGATG
chr8	100655516	100655780	100586340	100586604	-	15	264	2	noL1	"COLO1T,COLO1N"	21	300	L1PA5		VPS13B		c8p100655648FS	TTGAATCTATAAATTACCTTGGGC	c8p100655648ES	CTTTATGTATTCCCAGCTTTCATC
chr8	102679194	102680061	102610018	102610885	+	22	867	4	L1PA4	"COLO1T,COLO1N"	78	872	"(T)n,AluSx,L1PA4,MER53"		GRHL2		c8p102679627FS	TTAATTTTGCTAGAAGTACCAGGG	c8p102679627ES	TTAGATCCGAAAAGGTCTGTAGTC
chr8	105820888	105821299	105751712	105752123	-	691	411	13	L1HS	"COLO1T,COLO1N"	3892	448	"L2a,L1HS,(TTTTTA)n"				c8p105821093FS	CTTTATGTCTTTTGTTCACCACTG	c8p105821093ES	TCATTCTCAGTAAACTATCGCAAG
chr8	106389065	106389181	106319889	106320005	-	11	116	2	L1PA3	"COLO1T,COLO1N"	54	116					c8p106389123FS	AGATTAGACACATTCTCCTGGAAG	c8p106389123ES	ACACTGCATATTCTCACTCATAGG
chr8	107449609	107449870	107380433	107380694	-	14	261	2	L1PA8A	"COLO1T,COLO1N"	79	261	"(TTTTA)n,L1PA8A"		OXR1		c8p107449739FS	CAGGAACTGAGCTTAGAGAGGTAG	c8p107449739ES	AACTGCAGACTGGATAAAGAAATC
chr8	108328072	108328289	108258896	108259113	+	22	217	4	L1PA3	"COLO1T,COLO1N"	119	435	AT_rich				c8p108328180FS	AAGAAAGCAAGTTAATGGAGTCAG	c8p108328180ES	ATGATGAGTTCATGTCCTTTGTAG
chr8	109121092	109121228	109051916	109052052	-	50	136	5	noL1	"COLO1T,COLO1N"	173	79	MLT1A0		RSPO2		c8p109121160FS	TACATGCCATACTGTTTAAAATGC	c8p109121160ES	TTATTTTTCTTGATTAACCCCTTG
chr8	109141389	109142155	109072213	109072979	+	175	766	18	L1PA3	"COLO1T,COLO1N"	992	480	"L1PA3,L1PA5"		RSPO2		c8p109141772FS	TTTGAGAGATCTGCTGTTAGTCTG	c8p109141772ES	AATGCTAAATGACAAGTTAATGGG
chr8	109783717	109784076	109714541	109714900	+	50	359	2	L1PA4	"COLO1T,COLO1N"	82	360	"L1MC,L1PA4,AluSx3"		TMEM74		c8p109783896FS	CCTACCCACTCACTGTTTATTACC	c8p109783896ES	ATCAAGATCATATGGTTGGTATTG
chr8	113744770	113745258	113675594	113676082	+	11	488	3	L1PA3	"COLO1T,COLO1N"	31	338	L1PA3		CSMD3		c8p113745014FS	GACTCTCACCAGTCATTATCCTTC	c8p113745014ES	TACTGCAGCACTATTCACAATACC
chr8	114140910	114141452	114071734	114072276	-	5519	542	19	L1HS	"COLO1T,COLO1N"	14620	542	L1HS		CSMD3		c8p114141181FS	TGGAAAATGGAAAAGTAAGAAAAG	c8p114141181ES	AGAGGATAGCATTGGGAGATATAC
chr8	114533896	114534597	114464720	114465421	+	186	701	22	L1HS	"COLO1T,COLO1N"	2160	681	"MLT1N2,L1HS,(A)n,MLT2B3"				c8p114534246FS	AAGAATTCAACAAGGTGCTTATTC	c8p114534246ES	TAATGCTAGATGACACGTTAGTGG
chr8	114599132	114599518	114529956	114530342	-	21	386	4	L1PA4	"COLO1T,COLO1N"	46	384	"L1PA4,MER50"				c8p114599325FS	TATTGTTGCAGCTGGTACTTAGAG	c8p114599325ES	GTTCTCAGCAAACTATCACAAGG
chr8	114690786	114691025	114621610	114621849	-	1936	239	12	L1PA2	"COLO1T,COLO1N"	8249	464	L1PA2				c8p114690905FS	GTTGGATTTGTTCTCTTATCCTTG	c8p114690905ES	GATAAGTTCATGTCCTTTGTAGGG
chr8	114756374	114757057	114687198	114687881	+	4234	683	30	L1PA2	"COLO1T,COLO1N"	35736	816	"L1PA11,L1PA2"				c8p114756715FS	TACTTCCCTGGTTAGCTGTATTTC	c8p114756715ES	TAATGCTAGATGACACGTTAGTGG
chr8	115250195	115250693	115181019	115181517	+	38	498	9	L1PA3	"COLO1T,COLO1N"	148	464	"MER31A,L1PREC2"				c8p115250444FS	CTATCATCCTCTATTTTTGATCGG	c8p115250444ES	CATATGTACCTAACCTGCACATTG
chr8	115258211	115258688	115189035	115189512	-	427	477	19	L1PA2	"COLO1T,COLO1N"	1562	477	"LTR80B,L1PA2"				c8p115258449FS	TCTTTTCTGTCTGTGAATAGCATC	c8p115258449ES	TCATTCTCAGTAAACTATCGCAAG
chr8	115950937	115951437	115881761	115882261	+	291	500	4	noL1	"COLO1T,COLO1N"	2311	489	L2a	"LINE:Ewing,Stewart"			c8p115951187FS	AGCTTTAAAAACTTGAAAATAGCAC	c8p115951187ES	AGACTGAAATTCTTAGGATCATCG
chr8	116680495	116680700	116611320	116611525	-	30	205	5	L1PA8	"COLO1T,COLO1N"	44	74	L1ME3F		TRPS1		c8p116680597FS	ATAAAAAGTCTGCCAACCTAAATG	c8p116680597ES	AAACTAACACAGGAACAGAAAACC
chr8	119790776	119790907	119721595	119721726	-	825	131	3	noL1	"COLO1T,COLO1N"	1292	486		"LINE:dbRIP,Ewing,Iskow,Stewart"			c8p119790841FS	TCCTAGGAAGATTGTTCTTGAATC	c8p119790841ES	TTTCTTTCATTCTACTTGCACTTG
chr8	121310362	121310502	121241181	121241321	-	10	140	4	L1PA3	"COLO1T,COLO1N"	20	145	(TTTTA)n		COL14A1		c8p121310432FS	ATTTCTTTCGTCTTCTAACCATTG	c8p121310432ES	TCATTCTCAGTAAACTATCGCAAG
chr8	122106021	122106253	122036840	122037072	-	45	232	6	L1PA4	"COLO1T,COLO1N"	306	316					c8p122106137FS	CTAAGAGAGAAGGACACAAAGTCC	c8p122106137ES	AATGCTAAATGACAAGTTAATGGG
chr8	123560910	123561126	123491729	123491945	+	3218	216	11	noL1	"COLO1T,COLO1N"	6123	402	"AluYc,L1MA7"				c8p123561018FS	CTATGAGCTTGACACTGATCTAGG	c8p123561018ES	GTTTTGCTTGATAACTCCTCTCAC
chr8	124940648	124941393	124871467	124872212	-	26	745	5	L1PA2	"COLO1T,COLO1N"	267	843	"L1PA2,(TTA)n,AluSz,L1MA7"		FER1L6		c8p124941020FS	CATGCCTAGCCTATTTATTTATTTTC	c8p124941020ES	AATGCTAGATGACGAGTTAGTGG
chr8	126565082	126565244	126495900	126496062	-	41	162	6	L1PA3	"COLO1T,COLO1N"	138	164	L1PA3				c8p126565163FS	AAAAATACAAAAATTAGCCTGGTG	c8p126565163ES	CAAATGTCCAACAATGATAGACTG
chr8	126670252	126670711	126601070	126601529	+	552	459	6	L1HS	"COLO1T,COLO1N"	692	373	"L1HS,MER113"	LINE:dbRIP			c8p126670481FS	ACGAGAACTGAAGTTGTCTTATCC	c8p126670481ES	TCATTCTCAGTAAACTATCGCAAG
chr8	126750102	126750646	126680920	126681464	-	4211	544	16	L1HS	"COLO1T,COLO1N"	3455	600	"L1HS,AT_rich"				c8p126750374FS	ACTTGGTACTTCTTATTTTGCAGG	c8p126750374ES	ACACCGCATATTCTCACTCATAG
chr8	127563869	127563987	127494687	127494805	+	200	118	4	L1PA4	"COLO1T,COLO1N"	757	374	L1PA4				c8p127563928FS	TAACAATGATACAATGGACTTTGG	c8p127563928ES	CCTTGGTCTCTAGAGTTTTCTCTG
chr8	128048493	128048865	127979311	127979683	+	16	372	2	noL1	COLO1T	0	0	"AT_rich,MIR3,MIRc"				c8p128048679FS	TCCAAAGAATTTCAGTAACTTTCC	c8p128048679ES	CATTTATTCACAGTCTGAGTTTGC
chr8	129534350	129534464	129465168	129465282	-	307	114	27	L1HS	"COLO1T,COLO1N"	998	115	"L1HS,(T)n"	LINE:dbRIP			c8p129534407FS	TGAAAAACTTTCTCTAATTGCAGG	c8p129534407ES	GATGAGTTCATATCCTTTGTAGGG
chr8	129788809	129788923	129719627	129719741	-	21	114	2	L1PA15	"COLO1T,COLO1N"	15	115	"L1PA3,L1PA2"				c8p129788866FS	ATTTTATTTGAATCCCTTTTGATG	c8p129788866ES	CAAATGTCCAACAATGATAGACTG
chr8	131110413	131110792	131041231	131041610	+	23060	379	24	noL1	"COLO1T,COLO1N"	41250	365	"MER5A,MIR,MIRc"	"LINE:dbRIP,Ewing,Iskow,Stewart"			c8p131110602FS	GTAGCTCAATCTCAGCTCACTG	c8p131110602ES	ATTTGCTCTTTTCTTCCATGTG
chr8	134810912	134811233	134741730	134742051	+	60	321	8	L1PA2	"COLO1T,COLO1N"	2630	465	"L1PA2,MIRc"				c8p134811072FS	CCATGTCCTCTTTCATTTTATAGC	c8p134811072ES	ATGATGAGTTCATGTCCTTTGTAG
chr8	135151649	135152210	135082467	135083028	-	120365	561	123	L1HS	"COLO1T,COLO1N"	233171	561	"L1MEe,L1HS"	LINE:dbRIP			c8p135151929FS	AAATTTGTTCTGTCTCTCGACTTC	c8p135151929ES	ACACCGCATATTCTCACTCATAG
chr8	135235395	135235665	135166213	135166483	-	4514	270	4	L1PA4	"COLO1T,COLO1N"	16559	451	"L1PA4,L1PA7"				c8p135235530FS	CAATAAAGCCAAGCTCTTTTATTC	c8p135235530ES	TGATGAGTTCATGTTCTTTGTAGG
chr8	135498948	135499510	135429766	135430328	+	20493	562	53	L1HS	"COLO1T,COLO1N"	44584	564	"L1PREC2,L1HS,(A)n"				c8p135499229FS	ATTATTGTCCACATGTGTGTCTTC	c8p135499229ES	ACACCGCATATTCTCACTCATAG
chr8	136963270	136963763	136894088	136894581	+	13204	493	46	L1HS	"COLO1T,COLO1N"	25776	493	L1HS				c8p136963516FS	GTGAGTCCATTAAAGCTCTTTTTC	c8p136963516ES	ACACTGCATATTCTCACTCATAGG
chr8	137036839	137037294	136967657	136968112	+	2515	455	20	L1HS	"COLO1T,COLO1N"	6406	455	"L1HS,AT_rich"				c8p137037066FS	GATAGACTCAATGGTATGCATGTG	c8p137037066ES	TCATTCTCAGTAAACTATCGCAAG
chr8	138012678	138012915	137943496	137943733	-	1603	237	9	noL1	"COLO1T,COLO1N"	1159	1038		LINE:Stewart			c8p138012796FS	GGCTGTTGTCTAACATCAATACAG	c8p138012796ES	AGAAAGGCTGATACTTTCATCAAG
chr8	138325665	138325933	138256483	138256751	+	1977	268	22	L1HS	"COLO1T,COLO1N"	2098	651	L1HS				c8p138325799FS	CTTATCAGCTTAAGGAGATTTTCG	c8p138325799ES	TATTCCAATCAATAGGAAAAGAGG
chr8	141576500	141576784	141507318	141507602	-	41	284	7	L1PA3	"COLO1T,COLO1N"	70	433	"AluJb,L1PA3,AluSq2"				c8p141576642FS	CATGAGTCTTGTAGAGCGTACATC	c8p141576642ES	TGCAAATCATCATTCTCAGTAAAC
chr8	144378569	144378971	144307194	144307596	-	13	402	3	noL1	"COLO1T,COLO1N"	8	69	"AluSx,(T)n"				c8p144378770FS	TGTACAGGGTACGGTGATGTC	c8p144378770ES	GATTCAGCCACATACATCTTTTC
chr9	1327574	1328049	1337574	1338049	-	7384	475	28	L1HS	"COLO1T,COLO1N"	42716	488	"L1HS,MIR3,MER20"				c9p1327811FS	TCTTAAGTAGGAATCAGTTTTGCC	c9p1327811ES	ACACCGCATATTCTCACTCATAG
chr9	1558709	1559042	1568709	1569042	-	2467	333	21	L1PA3	"COLO1T,COLO1N"	10783	445	"L1MA9,L1PA3,(TTTG)n"				c9p1558875FS	TTCTATGTTGTGTCAATTCATTCC	c9p1558875ES	TCATTCTCAGTAAACTATCGCAAG
chr9	3359949	3360208	3369949	3370208	-	37	259	2	noL1	"COLO1T,COLO1N"	40	259	"AT_rich,AluY"		RFX3		c9p3360078FS	TGTAAGAAAGCTTTGTAAGCACTG	c9p3360078ES	AACAAACACTGTTCTGATTCACAG
chr9	3388878	3389007	3398878	3399007	+	32	129	9	L1HS	"COLO1T,COLO1N"	71	129	L1HS		RFX3		c9p3388942FS	CATAGTAGCTGGGATTACAGGTG	c9p3388942ES	ATCATCTTCTGTGAGGTCTTTTTC
chr9	4904774	4905114	4914774	4915114	-	30	340	3	L1PA4	"COLO1T,COLO1N"	143	342	"L1MC3,AT_rich,L1PA4"				c9p4904944FS	GTAGTCTTTGGAAGGAAGTCACTC	c9p4904944ES	ACCATCATTCTTAGCAAACTATCG
chr9	5229382	5229824	5239382	5239824	-	884	442	12	L1HS	"COLO1T,COLO1N"	5036	461	"L1HS,L1MB4"				c9p5229603FS	ATTTTAGGCAGAAAAATCAGTGAG	c9p5229603ES	TCATTCTCAGTAAACTATCGCAAG
chr9	5481399	5481845	5491399	5491845	+	2184	446	14	L1PA5	"COLO1T,COLO1N"	7508	451	MIR	"LINE:Ewing,Iskow,Stewart"	C9orf46		c9p5481622FS	ACTGGCTTCTAGGACTTTATATGG	c9p5481622ES	ACCATTATATCAGAATGTGTCCAG
chr9	5955018	5955410	5965018	5965410	+	20	392	7	L1PA2	"COLO1T,COLO1N"	76	318	"L1PA2,MER103C,MER46C"		KIAA2026		c9p5955214FS	ATAATGTTTAAGTCATCCCCAGTG	c9p5955214ES	TCATTCTCAGTAAACTATCGCAAG
chr9	6280484	6281051	6290484	6291051	+	2538	567	13	noL1	"COLO1T,COLO1N"	12736	565	"(CA)n,L2b"	"LINE:Ewing,Iskow"			c9p6280767FS	GAAAACAAAAACAAAAACAAAAAC	c9p6280767ES	TATGATTCCAACCATATGACATTC
chr9	7013680	7014278	7023680	7024278	-	70	598	3	L1PA4	"COLO1T,COLO1N"	466	598	L1M1		JMJD2C		c9p7013979FS	AGAGGTTTGTCAGTTTTGTTTTTC	c9p7013979ES	TAATGCTAAATGACAGGTTAATGG
chr9	9226690	9226883	9236690	9236883	+	1668	193	8	noL1	"COLO1T,COLO1N"	2497	293	MER34B-int		PTPRD		c9p9226786FS	TCCAACTAAGAAGGAAATCAAAAG	c9p9226786ES	ATGGACACAAAGGAGTATAAAAGC
chr9	10127671	10128265	10137671	10138265	+	246944	594	74	L1HS	"COLO1T,COLO1N"	667820	686	"L1HS,L1PA16"	LINE:dbRIP	PTPRD		c9p10127968FS	TAATTTTGGAACTCGTTATTGGTC	c9p10127968ES	TGGGAGATATACCTAATGCTAGATG
chr9	10449357	10449762	10459357	10459762	-	10	405	2	noL1	"COLO1T,COLO1N"	14	405	L1PA7		PTPRD		c9p10449559FS	CCTGCAAAAGACATGAACTTATC	c9p10449559ES	ATCTCCGAAACTCTCTGACTACAC
chr9	10715820	10716009	10725820	10726009	-	35	189	10	L1PA3	"COLO1T,COLO1N"	353	376	"(CA)n,CT-rich"				c9p10715914FS	CCAGTACCTACTAGCAATTTGAGG	c9p10715914ES	TCATTCTCAGTAAACTATCGCAAG
chr9	10835390	10835655	10845390	10845655	-	23	265	4	L1PA3	"COLO1T,COLO1N"	254	315	L1MEc				c9p10835522FS	TGTTTTTCCCTATTTTCTGTTTTC	c9p10835522ES	AAATCATCATTCTCAGCAAACTATC
chr9	12546733	12546920	12556733	12556920	-	5131	187	18	L1HS	"COLO1T,COLO1N"	10130	459	"T-rich,MER49"	LINE:dbRIP			c9p12546826FS	TGAGTTGCAAATCGTTTTACTTAG	c9p12546826ES	GATGAGTTCATATCCTTTGTAGGG
chr9	13569438	13569905	13579438	13579905	+	127	467	7	noL1	"COLO1T,COLO1N"	106	467	"AluSz6,AluSx1"				c9p13569671FS	GTATACCGTTTTCTGCAACATTAC	c9p13569671ES	ACATAGTGAAACCCCTGTCTCTAC
chr9	14659994	14660326	14669994	14670326	+	82	332	5	L1PA2	"COLO1T,COLO1N"	456	287	"L1PA2,MER58B"		ZDHHC21		c9p14660160FS	GGGCCATACAGTCTCTATTACAAC	c9p14660160ES	TCATTCTCAGTAAACTATCGCAAG
chr9	15317294	15317626	15327294	15327626	+	20	332	6	L1PA2	"COLO1T,COLO1N"	19	519	"THE1B,L1PA2"				c9p15317460FS	GGACTGTGGACTTTTGAGTTAATG	c9p15317460ES	ATACACCATGGAATACTATGCAGC
chr9	16056201	16056509	16066201	16066509	-	206	308	6	L1PA2	"COLO1T,COLO1N"	35	305	L1PA2				c9p16056355FS	AAAGACCACCAAAAACAGTATCTC	c9p16056355ES	TCATTCTCAGTAAACTATCGCAAG
chr9	16457793	16458470	16467793	16468470	+	1167	677	18	L1HS	"COLO1T,COLO1N"	5101	677	"AluJb,L1HS,MIR,AluSc"		"DKFZp686A01127,BNC2"		c9p16458131FS	GTCAAGAGATCAAGACCATTCTG	c9p16458131ES	TAATGCTAGATGACACGTTAGTGG
chr9	16856615	16856720	16866615	16866720	+	13	105	3	noL1	"COLO1T,COLO1N"	17	105	(A)n		"DKFZp686A01127,BNC2"		c9p16856667FS	AAGTTTGAATTTCTGTGGATGTTC	c9p16856667ES	TTTCTCTCTGGAATACAGAAGTTG
chr9	17722959	17723317	17732959	17733317	-	167	358	11	L1PA3	"COLO1T,COLO1N"	489	354	"L1PA3,AT_rich,MIR3"		SH3GL2		c9p17723138FS	TATAGGCAAAGGAAGGAGATTATG	c9p17723138ES	TAGTTCTAGATCCCTGAGGAATTG
chr9	17769903	17770531	17779903	17780531	-	635705	628	99	L1HS	"COLO1T,COLO1N"	3349891	668	"L1ME3A,L1HS,MER5B"		SH3GL2		c9p17770217FS	AGATAAGTTGGTTTTCTTTACCCC	c9p17770217ES	TAATGCTAGATGACACGTTAGTGG
chr9	18301293	18301451	18311293	18311451	+	13	158	4	L1PA7	"COLO1T,COLO1N"	12	441	L1PA7				c9p18301372FS	GCCCTTTGTAATACTGTGTTGTAG	c9p18301372ES	TAGACTGGATTAAGAAAATGTGGC
chr9	18707235	18707519	18717235	18717519	+	19	284	4	L1PA3	"COLO1T,COLO1N"	86	561	"(TAA)n,L1PA3"		ADAMTSL1		c9p18707377FS	CCTAGATTATGCAGCTGGTAAAAG	c9p18707377ES	TCATCATTCTCAGTAAACTATCGC
chr9	19525877	19526217	19535877	19536217	-	98	340	10	L1PA2	"COLO1T,COLO1N"	1225	927	"L1PA2,AT_rich,L1PA7"		SLC24A2		c9p19526047FS	CAGTTTAAGTTTTCTGCATGTGAC	c9p19526047ES	TCATTCTCAGTAAACTATCGCAAG
chr9	19900678	19900938	19910678	19910938	-	17	260	3	L1PA3	"COLO1T,COLO1N"	41	367	"L1PA3,(TTTTC)n"				c9p19900808FS	TTAATCACCTTTTGTTCATCAGTG	c9p19900808ES	TCATTCTCAGTAAACTATCGCAAG
chr9	20756660	20756776	20766660	20766776	-	32	116	4	L1PA2	"COLO1T,COLO1N"	238	158	CT-rich		KIAA1797		c9p20756718FS	ATCTGTGGCTTTTTAACCTAACAG	c9p20756718ES	TCATTCTCAGTAAACTATCGCAAG
chr9	21531888	21532097	21541888	21542097	+	22	209	3	L1PA2	"COLO1T,COLO1N"	38	433	"MamRep38,L1PA2"		LOC554202		c9p21531992FS	TCATTGCATTCTATGATATGAACC	c9p21531992ES	AATGTCCAACAATGATAGACTGG
chr9	22477618	22478067	22487618	22488067	-	97	449	6	noL1	"COLO1T,COLO1N"	182	455	"T-rich,L1PA3"				c9p22477842FS	GTCATTCCTAAGTGTTCTCAATCC	c9p22477842ES	CACAAAGGACTATAAATCATGCTG
chr9	24059101	24059393	24069101	24069393	+	66	292	4	L1PA3	"COLO1T,COLO1N"	280	392					c9p24059247FS	TTAGGAGGAGTAAATTAAAGTGCC	c9p24059247ES	TCATTCTCAGTAAACTATCGCAAG
chr9	24564355	24564584	24574355	24574584	-	172	229	7	L1PA2	"COLO1T,COLO1N"	451	481	"L1PA2,L1PA5"				c9p24564469FS	CCTCTTACTTTATAGCCTGCACTC	c9p24564469ES	CAAATGTCCAACAATGATAGACTG
chr9	28101586	28101925	28111586	28111925	-	21903	339	23	L1HS	"COLO1T,COLO1N"	91235	690	L1HS		LINGO2		c9p28101755FS	GCACATGTATCCCAGAAGTTAAAG	c9p28101755ES	GATGAGTTCATATCCTTTGTAGGG
chr9	28191024	28191129	28201024	28201129	-	16	105	3	L1PA2	"COLO1T,COLO1N"	104	107	L1PA2		LINGO2		c9p28191076FS	ACCCTCCAGTCATCTATGTCTTAC	c9p28191076ES	CTGCTATAAAGACACATGCACAC
chr9	29281794	29282109	29291794	29292109	-	266	315	9	L1PA15	"COLO1T,COLO1N"	1105	667	"L1M2,L1PA15"				c9p29281951FS	ACCACCAAGTTAGTTAACACATCC	c9p29281951ES	CTAGATGACAAGTTAGTGGGTGC
chr9	29296765	29297067	29306765	29307067	+	28	302	8	L1PA2	"COLO1T,COLO1N"	77	373	"L1PA2,(TAAAA)n,LTR16A,AT_rich"				c9p29296916FS	AGACTTTGTTAAAGGAGGTCTGTG	c9p29296916ES	TCATTCTCAGTAAACTATCGCAAG
chr9	32076745	32077044	32086745	32087044	+	40	299	10	L1PA2	"COLO1T,COLO1N"	144	298	"L1PA2,HAL1b,AT_rich"				c9p32076894FS	ATTACTGACAAGGTGTACCAGTCC	c9p32076894ES	TCTTGAATACTTACATCCAAAGGG
chr9	32082273	32082770	32092273	32092770	-	147494	497	72	noL1	"COLO1T,COLO1N"	410142	500	AluSq	LINE:Ewing			c9p32082521FS	TCCCAGATCTGCTCACTATATTTC	c9p32082521ES	ACAAAACAAAACAAAATTAGCTGG
chr9	32214600	32215074	32224600	32225074	-	157915	474	24	L1PA3	"COLO1T,COLO1N"	626297	647	"L1PA3,L1PA4"				c9p32214837FS	TAATGCTTAAAATGTTTCTTGTGC	c9p32214837ES	TCATTCTCAGTAAAGTATCGCAAG
chr9	32453554	32453914	32463554	32463914	-	6200	360	16	noL1	"COLO1T,COLO1N"	41908	582		"LINE:dbRIP,Ewing,Iskow,Stewart"	"DDX58,RIG-I"		c9p32453734FS	CCTGTTTTTAATCCAATTTTTCAG	c9p32453734ES	GTACTGTCCATTGTCTGTGTGTG
chr9	32680241	32680457	32690241	32690457	+	50	216	7	L1PA4	"COLO1T,COLO1N"	402	217	L1PA4				c9p32680349FS	GCTCGGCTAATTTTTGTATTTTAG	c9p32680349ES	TTTATATCCTTTGTAGGGACATGG
chr9	34835164	34835495	34845164	34845495	-	12	331	3	L1PA3	"COLO1T,COLO1N"	36	150	L1M1				c9p34835329FS	GCATAGTTTAAGTCCAATGTTTCC	c9p34835329ES	GAGGGATCGCTTTAGGAGATATAC
chr9	35382948	35383180	35392948	35393180	+	22	232	8	L1PA3	"COLO1T,COLO1N"	52	319	"L2c,L1ME1"		UNC13B		c9p35383064FS	TTACTTATCTCTTCCCCTACCCTC	c9p35383064ES	AATGCTAGATGACAAGTTAGTGGG
chr9	35873840	35874091	35883840	35884091	+	351	251	14	noL1	"COLO1T,COLO1N"	841	388	"(TA)n,L1M5"				c9p35873965FS	AAAGAAAATGAAAGTAAATGGAGC	c9p35873965ES	AAGCCTGACAATAAGAATAAGCAC
chr9	35940379	35940585	35950379	35950585	-	33	206	4	L1PA3	"COLO1T,COLO1N"	156	353	"LTR39,AT_rich"				c9p35940482FS	ACACCTGTAATCTCAGCACTTTG	c9p35940482ES	TGGAAATCATCATTCTCAGTAAAC
chr9	42151604	42151832	42161604	42161832	-	4466	228	16	L1HS	"COLO1T,COLO1N"	12566	225	L1HS				c9p42151718FS	CTCATTTATTTTAGTATGCAAGCG	c9p42151718ES	ATATTGAGAATGGGAATTTGAATC
chr9	66539041	66539299	66799221	66799479	-	36	258	4	noL1	"COLO1T,COLO1N"	28	910	ALR/Alpha				c9p66539170FS	TGAACTTTTCATTTGATAGAGCAG	c9p66539170ES	ATCACAAAGGAGTTTCTGAGAATG
chr9	66562205	66562661	66822385	66822841	-	13	456	4	noL1	"COLO1T,COLO1N"	299	833	ALR/Alpha				c9p66562433FS	TCATAGAGCAGATTTGAAACACTC	c9p66562433ES	AAAGGAAAGGTTTAACTCTGTGAG
chr9	66563880	66564456	66824060	66824636	-	20	576	2	noL1	"COLO1T,COLO1N"	12	439	ALR/Alpha				c9p66564168FS	AGTTGAACATTCCCTTTCATAGAG	c9p66564168ES	AAGTTGAGTACACACATCACGAAG
chr9	66573648	66574428	66833828	66834608	+	15	780	5	noL1	"COLO1T,COLO1N"	112	1626	ALR/Alpha				c9p66574038FS	TCTACTTTTTATATTGGCATTCCC	c9p66574038ES	AAGGAAATATCTTCGCATAAAAAC
chr9	66583940	66584349	66844120	66844529	-	10401	409	8	noL1	"COLO1T,COLO1N"	61762	1184	ALR/Alpha				c9p66584144FS	CTTCGCATAAAAACTAGACAGAAG	c9p66584144ES	AAGATATTTCCTTTTCCATCACAG
chr9	67699220	67699335	68209400	68209515	-	115406	115	29	noL1	"COLO1T,COLO1N"	174059	112					c9p67699277FS	GTGGAAAAGAGAGGACTAGAACTG	c9p67699277ES	TTTACATTTTCCCACTTTTCTATTG
chr9	67966996	67967203	68477176	68477383	-	345	207	10	noL1	"COLO1T,COLO1N"	61	237		"LINE:Ewing,Iskow"			c9p67967099FS	ATGCATCGATAGTTAATTTTCTCC	c9p67967099ES	AAACTAGAAATGGACATGAAATCC
chr9	68171651	68171980	68781831	68782160	-	52700	329	11	L1HS	"COLO1T,COLO1N"	175455	326	L1HS				c9p68171815FS	AGTTTCCAGTTCTGAATATCTTGG	c9p68171815ES	GATGAGTTCATATCCTTTGTAGGG
chr9	69796780	69796886	70556960	70557066	-	133	106	5	noL1	"COLO1T,COLO1N"	360	110					c9p69796833FS	GTGGAAAAGAGAGGACTAGAACTG	c9p69796833ES	TTACATTTTCCCACTTTTCTATGG
chr9	70379578	70379936	71189758	71190116	-	26	358	4	noL1	"COLO1T,COLO1N"	53	266	"(TTTG)n,AluSx"				c9p70379757FS	GCTCTACATCAAATCACATTTCTG	c9p70379757ES	ATACAAATGGAGGTAAAACCAATC
chr9	70396693	70397123	71206873	71207303	-	206	430	13	L1PA2	"COLO1T,COLO1N"	1478	457	"L1PA2,L1PA7"				c9p70396908FS	TGTATTTCCTGAATTTGAATGTTG	c9p70396908ES	AAAAGATGAGTTCATTGTCCTTTG
chr9	71287822	71288000	72098002	72098180	+	18	178	4	L1PA2	"COLO1T,COLO1N"	76	404	"L1PA2,(A)n"		APBA1		c9p71287911FS	GTTTGTTTGTTTCACACTATGCTC	c9p71287911ES	CCAAATGTCCAACAAATGATATAC
chr9	72238073	72238651	73048253	73048831	+	2368	578	26	L1HS	"COLO1T,COLO1N"	8882	622	"L1HS,L1M1,L1MA4"				c9p72238362FS	AAAAGAGAACCCAGAGATAAATCC	c9p72238362ES	TGGGAGATATACCTAATGCTAGATG
chr9	74094473	74094716	74904653	74904896	-	2324	243	12	noL1	"COLO1T,COLO1N"	4638	262	THE1B-int	"LINE:Ewing,Iskow,Stewart"			c9p74094594FS	GAGGTTTATTGGACTTACAGTTGC	c9p74094594ES	CTCTGCAAGGGAAGTATGAAAG
chr9	74725864	74726309	75536044	75536489	-	23852	445	43	L1HS	"COLO1T,COLO1N"	55445	457	"L1HS,AluY"		ALDH1A1		c9p74726086FS	TTATTATGTCTTGCATAATGTGGG	c9p74726086ES	CTCTCTCTCTTGCTGATTATCCTC
chr9	75600262	75600762	76410442	76410942	-	119496	500	97	L1HS	"COLO1T,COLO1N"	530363	501	"L2a,L1HS,(T)n"				c9p75600512FS	TTTTCTTTTATTCAGCCAAATCTC	c9p75600512ES	TCATTCTCAGTAAACTATCGCAAG
chr9	76734286	76734475	77544466	77544655	+	23819	189	28	noL1	"COLO1T,COLO1N"	31029	214	HAL1				c9p76734380FS	AAAACCATCAGATCTTTTGAGAAC	c9p76734380ES	AATTCTAAATTGAGCATCCATCAC
chr9	77264397	77265162	78074577	78075342	+	13	765	3	L1PA6	"COLO1T,COLO1N"	17	130	L1PA6				c9p77264779FS	GATATCACTTGGATTCCCATTATC	c9p77264779ES	CAAAGGATTATAAATCATGCTGC
chr9	79203855	79204488	80014035	80014668	+	27157	633	59	L1HS	"COLO1T,COLO1N"	88368	723	L1HS		VPS13A		c9p79204171FS	TCTGTGCATATAAGCAGTTAAACC	c9p79204171ES	TGGGAGATATACCTAATGCTAGATG
chr9	80879356	80879482	81689536	81689662	-	10	126	2	noL1	"COLO1T,COLO1N"	8	126	L1PA3				c9p80879419FS	ATTGAATCTGTAAATTACCTTGGG	c9p80879419ES	AATAAAATACTGGCAAAACGAATC
chr9	81272459	81272608	82082639	82082788	-	670	149	5	noL1	"COLO1T,COLO1N"	685	424	AluY	"LINE:Ewing,Iskow"			c9p81272533FS	TTCTCCTTTGAGATCGTAACTTTC	c9p81272533ES	TTCTACTTTATTTCTTGGACCCTG
chr9	82056571	82057361	82866751	82867541	+	4340	790	23	L1HS	"COLO1T,COLO1N"	21851	790	L1HS				c9p82056966FS	TTATAAGATTGTCCTTTCCTCAGC	c9p82056966ES	TAATGCTAGATGACACGTTAGTGG
chr9	83516654	83516754	84326834	84326934	+	25	100	7	noL1	"COLO1T,COLO1N"	58	88	"SVA_F,(A)n"		"BC036431,CR614802"		c9p83516704FS	CCAACTCTGGTTAATTTTTAGGAG	c9p83516704ES	TGTGTAGAAAGAAGTAGACATGGG
chr9	84853817	84854327	85663997	85664507	-	5969	510	20	L1HS	"COLO1T,COLO1N"	13187	498	"L1HS,AluSx"		RASEF		c9p84854072FS	GTGTGGTAGTGCATGTCTGTAATC	c9p84854072ES	TCATTCTCAGTAAACTATCGCAAG
chr9	85254762	85255126	86064942	86065306	-	17923	364	39	L1HS	"COLO1T,COLO1N"	88800	489	"(CA)n,L1HS"		FRMD3		c9p85254944FS	TAGACTCATGTTTGTTGATTGGAC	c9p85254944ES	AAAAACAGATGTAAAAACTGAGGG
chr9	86876082	86876732	87686262	87686912	-	16	650	4	L1PA3	"COLO1T,COLO1N"	32	716	"L1PA3,MLT1D"				c9p86876407FS	AGGGAAGTACATGCAATTTTACAC	c9p86876407ES	TTATTCACAATAGCAAAGACATGG
chr9	87274673	87275034	88084853	88085214	-	12	361	3	noL1	"COLO1T,COLO1N"	18	66	"AluJb,AT_rich"				c9p87274853FS	GTTGTTTATTTTTCTGCACAACTG	c9p87274853ES	TCTCTTTAGTTAAAATTTGGAGGC
chr9	87615768	87616070	88425948	88426250	-	73	302	6	L1PA2	"COLO1T,COLO1N"	142	301	L1PA2	LINE:dbRIP	"BC108718,CR613032"		c9p87615919FS	AAAATATGTGTGTGTGTGTGTGTG	c9p87615919ES	TCATTCTCAGTAAACTATCGCAAG
chr9	88852654	88853059	89662834	89663239	+	33	405	6	L1PA3	"COLO1T,COLO1N"	246	755	L1MEc				c9p88852856FS	TCATTTTCATTTAGTGTCATCATTG	c9p88852856ES	GAAGGATAGCATTGGGAGATATAC
chr9	91755809	91756245	92715989	92716425	+	15	436	3	L1PA2	"COLO1T,COLO1N"	39	162	"MER130,L1PA2"				c9p91756027FS	ATCTGGACTCTTCTTTTCAGGTC	c9p91756027ES	GATAAGAAAACAAAACCAAACACC
chr9	91957694	91958070	92917874	92918250	+	4116	376	17	L1HS	"COLO1T,COLO1N"	5150	699	"L1HS,L1MC1"	LINE:dbRIP			c9p91957882FS	CATGGCATCAGTAAAAATCTAAAG	c9p91957882ES	GATGAGTTCATATCCTTTGTAGGG
chr9	92655947	92656393	93616126	93616572	+	98	446	8	L1PA3	"COLO1T,COLO1N"	363	446	L1PA3		SYK		c9p92656170FS	ACAGTGATGTTCTTGCAACTTTAG	c9p92656170ES	TCATCATTCTCAGTAAACTATCGC
chr9	93097976	93098246	94058155	94058425	-	457	270	5	noL1	"COLO1T,COLO1N"	2459	273		"LINE:dbRIP,Ewing,Iskow,Stewart"	AUH	AUH.4	c9p93098111FS	CAGGTGACCATTAGAAAATTTAGC	c9p93098111ES	TGACCTATTAAGCTCTTTGGTCTG
chr9	93884058	93884395	94844237	94844574	-	12835	337	35	L1PA3	"COLO1T,COLO1N"	37044	490	"L2a,L1PA3,MIRb"		SPTLC1		c9p93884226FS	ACAATCAGCCTATTTTAACCAGAG	c9p93884226ES	TCATTCTCAGTAAACTATCGCAAG
chr9	94683621	94684167	95643800	95644346	+	21	546	2	L1PA12	"COLO1T,COLO1N"	29	68	"L1PA12,AluY"		ANKRD19		c9p94683894FS	ACTCTGAAATTTTGGCTATGTACC	c9p94683894ES	CCCAGAGAGACGTTAAAATAAGAC
chr9	95915193	95915694	96875372	96875873	-	188	501	12	L1HS	"COLO1T,COLO1N"	930	512	"MLT1A1-int,L1HS"				c9p95915443FS	TATAGCAGCACAAAATGGACTAAG	c9p95915443ES	TCATTCTCAGTAAACTATCGCAAG
chr9	97505651	97506148	98465830	98466327	+	2946	497	37	L1HS	"COLO1T,COLO1N"	10882	580	"(TG)n,L1HS,Tigger2,L1M5"	LINE:dbRIP			c9p97505899FS	GTACTTGGATTGTAAACTTCCCTG	c9p97505899ES	TCATTCTCAGTAAACTATCGCAAG
chr9	98690226	98690588	99650405	99650767	+	10	362	4	L1PA4	"COLO1T,COLO1N"	106	78	"L1MDa,L1PA4"				c9p98690407FS	ATTAAGCTCAGGCACATCAAAC	c9p98690407ES	CAGCCATAAAATATGACGAGTTC
chr9	98765221	98765462	99725400	99725641	+	165	241	3	noL1	"COLO1T,COLO1N"	863	242	AluSz		HIATL2		c9p98765341FS	GCCTGGCTAATTTTTGTATTTTTAG	c9p98765341ES	TGTCTTTTTGTTGTTGTTTGATTC
chr9	101654969	101655482	102615148	102615661	-	74114	513	62	L1HS	"COLO1T,COLO1N"	210823	513	"L1HS,MIRb"	LINE:dbRIP	NR4A3		c9p101655225FS	TCTTTTTCCTGGTCTTATTGAAAC	c9p101655225ES	TCATTCTCAGTAAACTATCGCAAG
chr9	102789051	102789495	103749230	103749674	+	3448	444	33	L1HS	"COLO1T,COLO1N"	30723	447	"L1HS,MIR"				c9p102789273FS	ATACAGATACCCACCACCTAACTC	c9p102789273ES	GATGAGTTCATATCCTTTGTAGGG
chr9	103483310	103483859	104443489	104444038	-	2548	549	17	L1HS	"COLO1T,COLO1N"	7620	547	"L1HS,L2b"	LINE:dbRIP	GRIN3A		c9p103483584FS	AACAGCAGGTAAATTCTCAAACTC	c9p103483584ES	ACACTGCATATTCTCACTCATAGG
chr9	103679577	103679841	104639756	104640020	+	70	264	7	L1PA3	"COLO1T,COLO1N"	242	294	"L1PA3,AT_rich,L1M5"				c9p103679709FS	TTAAAATTACAGGGAGTAATTGGC	c9p103679709ES	TGGAAATCATCATTCTCAGTAAAC
chr9	103893179	103893650	104853358	104853829	-	3125	471	23	L1PA3	"COLO1T,COLO1N"	13553	737	"L1PA3,LTR48B"				c9p103893414FS	TTTGACATGCTGTATTGAAGAAAC	c9p103893414ES	TGGAAATCATCATTCTCAGTAAAC
chr9	104113453	104113683	105073632	105073862	+	236	230	3	noL1	"COLO1T,COLO1N"	2381	231		"LINE:dbRIP,Ewing,Stewart"			c9p104113568FS	AATGCTAGAGTTGAAATTTTGATG	c9p104113568ES	ATTGACATTAAAGAGAAGGCTCAG
chr9	104201851	104202410	105162030	105162589	-	4275	559	32	L1HS	"COLO1T,COLO1N"	21296	607	"L1HS,Tigger2"				c9p104202130FS	TTCTTCTTCATCTTCCTTCTCATC	c9p104202130ES	AGCTCTAATCTTCTATGCAAATGG
chr9	104823833	104824361	105784012	105784540	-	3355	528	20	L1HS	"COLO1T,COLO1N"	9022	528	"L1HS,(TTTA)n,AluJo,AT_rich"				c9p104824097FS	AAGTTCTCTTTTCCCCTGATATTC	c9p104824097ES	TAATGCTAGATGACACGTTAGTGG
chr9	105541053	105541590	106501232	106501769	-	1644	537	15	L1HS	"COLO1T,COLO1N"	2876	537	"L1HS,(TTTTTA)n"	LINE:Iskow			c9p105541321FS	ATGTTTGAAAATATGGACCTTGAG	c9p105541321ES	GAGGGATAGCATTGGGAGATATAC
chr9	108210264	108210389	109170443	109170568	+	888	125	5	L1PA3	"COLO1T,COLO1N"	3788	126	MIRc		BC039487		c9p108210326FS	ATTAAACTCACTTCAATTTCCCAG	c9p108210326ES	TCATTCTCAGTAAACTATCGCAAG
chr9	108814213	108814879	109774392	109775058	-	11	666	5	noL1	"COLO1T,COLO1N"	28	666	"(TG)n,(T)n"		AK097706		c9p108814546FS	AGTGTTACAAACACAGCACAATTC	c9p108814546ES	GCTTTTCAAGTAAGCACTTATTCC
chr9	109058100	109058208	110018279	110018387	-	309	108	21	noL1	"COLO1T,COLO1N"	1156	109	"SVA_F,(T)n"	LINE:Ewing			c9p109058154FS	CTGAGACATGAGAATAGCTTGAAC	c9p109058154ES	TGTGTAGAAAGAAGTAGACATGGG
chr9	110312050	110312470	111272229	111272649	+	43	420	2	L1PA4	"COLO1T,COLO1N"	141	427	L1PA4				c9p110312260FS	TCAAATAGAAGAAGTAGCTGTCCC	c9p110312260ES	ACCATCATTCTCAGGAAACTATTG
chr9	110604853	110605153	111565032	111565332	+	793	300	12	noL1	"COLO1T,COLO1N"	670	397	Tigger8	"LINE:dbRIP,Ewing,Stewart"			c9p110605003FS	CTAATTTATTAGTCCCACAAAGGC	c9p110605003ES	AGACAATGGACAGTTGAAAATATG
chr9	110834452	110834976	111794631	111795155	-	11	524	5	noL1	"COLO1T,COLO1N"	44	69	"AluSx,AluSx1,L1MC4"		C9orf5		c9p110834714FS	TCATTGTATCATTGGTTATCGAAG	c9p110834714ES	CTAAAAATACAAAAATCAGCCAGG
chr9	111756718	111756835	112716897	112717014	+	24	117	6	L1PA2	"COLO1T,COLO1N"	8	443	"MER102b,L1PA2"		"PALM2-AKAP2,AKAP2"		c9p111756776FS	GTGGGCCAAGAGTAAGAATAATAG	c9p111756776ES	GTTTTGTTATTGTTGCTGATGATG
chr9	111824598	111824705	112784777	112784884	-	77	107	8	L1PA4	"COLO1T,COLO1N"	421	921	"L1PA4,(TTTTC)n"		"PALM2-AKAP2,AKAP2"		c9p111824651FS	CATTTTTAGCATTGTCTTTCACTG	c9p111824651ES	CGTATGTTTATTGTGGCACTATTC
chr9	112214756	112214861	113174935	113175040	+	11	105	4	noL1	"COLO1T,COLO1N"	72	105	L1PA3		SVEP1		c9p112214808FS	CAGTCTATCATTGTTGGACATTTG	c9p112214808ES	TGTACAATGCCATATTTAGCCTAC
chr9	112225190	112225658	113185369	113185837	+	65534	468	93	L1HS	"COLO1T,COLO1N"	163951	493	"L1HS,L1ME3C,(A)n"	LINE:dbRIP	SVEP1		c9p112225424FS	AAAGATATTCTGCTTATCTGTGGC	c9p112225424ES	TCATTCTCAGTAAACTATCGCAAG
chr9	112599185	112599697	113559364	113559876	+	68322	512	78	L1HS	"COLO1T,COLO1N"	85368	533	"L2a,L1HS,AT_rich,(A)n"		MUSK		c9p112599441FS	GATTCAGATTTTTGTGTGATGAAG	c9p112599441ES	TCATTCTCAGTAAACTATCGCAAG
chr9	114124061	114124266	115084240	115084445	+	22	205	2	noL1	"COLO1T,COLO1N"	26	206	"L1MCa,AluSc"		ROD1		c9p114124163FS	ATGTGACTTTCACAAGTGTTTCAC	c9p114124163ES	AAAATTCATCAGCTATTCTTGGAC
chr9	114599895	114600280	115560074	115560459	-	430	385	19	L1HS	"COLO1T,COLO1N"	1139	704	"L1HS,AluSz"		SNX30		c9p114600087FS	GTTTTAATGGAATTGGTTGATCTC	c9p114600087ES	GATGAGTTCATATCCTTTGTAGGG
chr9	114996493	114996876	115956672	115957055	+	28	383	5	L1PA2	"COLO1T,COLO1N"	89	383	"L1ME4a,L1PA2"		"FKBP15,KIAA0674"		c9p114996684FS	CTATTCATGGAAGCATTGTTTATG	c9p114996684ES	ACTAACACTGTGACCATCAGAGC
chr9	115052730	115053070	116012909	116013249	+	78	340	4	L1PA3	"COLO1T,COLO1N"	219	303	"MSTB2,L1PA3"		"SLC31A1,FKBP15"		c9p115052900FS	TTTTTAGTGGAGATGAGGTTTCAC	c9p115052900ES	CTCACTTATAGGTGGGAATTGAAC
chr9	117123383	117123675	118083562	118083854	-	157	292	3	noL1	"COLO1T,COLO1N"	128	800	L1ME1	"LINE:dbRIP,Ewing,Iskow"	"CTS9,DEC1"		c9p117123529FS	GGAATTTAAACATTTCTGCTCTTC	c9p117123529ES	AGATTGAGTGCATATTTCAATGAG
chr9	120977168	120977797	121937347	121937976	+	165	629	9	L1PA2	"COLO1T,COLO1N"	1576	702	"L1PA2,L1PA7"		DBC1		c9p120977482FS	AAGAGTTTATTGGTAGCATGGAAG	c9p120977482ES	TAATGCTAGATGACGAGTTAGTGG
chr9	122318344	122318949	123278523	123279128	+	54	605	12	L1PA4	"COLO1T,COLO1N"	276	370	"L1ME4a,AluJo,L1PA4"		CDK5RAP2		c9p122318646FS	ACCCTTTCACTGAATAGATTTCAC	c9p122318646ES	TTGTAGATACATGGATGAAACTGG
chr9	123773824	123774255	124734003	124734434	+	24	431	4	noL1	"COLO1T,COLO1N"	70	428	"SVA_F,L1PA7"		TTLL11		c9p123774039FS	CAAATAATGTGTTCACCAGTACG	c9p123774039ES	GAATAGAAAGGTGGGAAAGGTG
chr9	127427310	127427525	128387489	128387704	+	22	215	8	noL1	"COLO1T,COLO1N"	251	79	"SVA_F,(CAAAA)n"		MAPKAP1		c9p127427417FS	GTTTGTTTGTTTGTTTTTGAGATG	c9p127427417ES	CTTTTCATTTTGTTCTGCACTAAG
chr9	128804529	128804830	129764708	129765009	-	34	301	8	L1PA2	"COLO1T,COLO1N"	89	305	"L1PA2,L1ME3"		RALGPS1		c9p128804679FS	TCAAGATGTAAAACATACCAGCAC	c9p128804679ES	ACTAGAAATACCATTTGATCCAGC
chr9	129862706	129863189	130822885	130823368	+	16	483	5	noL1	"COLO1T,COLO1N"	9	483	"AluSg,MER58A,MER5A"				c9p129862947FS	TTAAACTGACTAGTTATTTCCGGG	c9p129862947ES	AGAAAGTATCAGGATTACTGAGGG
chr9	132638497	132638898	133648676	133649077	-	21	401	4	noL1	"COLO1T,COLO1N"	13	66	"L1MEd,AluJb,AluSp"		ABL1		c9p132638697FS	CCAAGGCCTATAAAATAAAAGATG	c9p132638697ES	ATGGGCTTTTCACTATCTTAATTG
chr9	133036566	133036824	134046745	134047003	-	33	258	6	L1PA3	"COLO1T,COLO1N"	180	626	"MLT1E2,L1PA3"		"NUP214,KIAA0023"		c9p133036695FS	CTTTCTACCTTTCCTTATCTGACG	c9p133036695ES	CAAATGTCCAACAATGATAGACTG
chr9	134394665	134395503	135404844	135405682	+	2342	838	28	L1HS	"COLO1T,COLO1N"	9443	840	"AluSc8,L1MD2,L1HS,AluSx1,AluJb"		FLJ46082		c9p134395084FS	GGTGACAGAGAGAGAGAGACTCC	c9p134395084ES	TAATGCTAAATGACACGTTAGTGG
chr9	140197780	140198256	141077959	141078435	-	14289	476	37	L1HS	"COLO1T,COLO1N"	37653	476	"L1MB3,L1HS"				c9p140198018FS	CTATTGCATTGGTCTTTATGTCTG	c9p140198018ES	TCATTCTCAGTAAACTATCGCAAG
chrX	6511873	6512109	6501873	6502109	-	158	236	11	L1PA2	"COLO1T,COLO1N"	438	340	L1PA2				cXp6511991FS	AGCTATATTTTGGCAGTGAAAAAC	cXp6511991ES	CAAATGTCCAACAATGATAGACTG
chrX	7379480	7379602	7369480	7369602	-	18	122	5	L1PA4	"COLO1T,COLO1N"	143	124	L1PA4				cXp7379541FS	AGAAGCCTAAATATACCCCTAAGC	cXp7379541ES	TAAATCACGCTGCTATAAAGACAC
chrX	8617290	8617833	8657290	8657833	+	12	543	3	noL1	"COLO1T,COLO1N"	11	70	"(TAA)n,T-rich,(GA)n,LTR7,AluJb"		KAL1		cXp8617561FS	TGTGTGAGGTTTCAACTAGTGTTC	cXp8617561ES	CTCAAAAATCTCAGGACTATTTCC
chrX	10894288	10895033	10984367	10985112	-	37	745	4	L1PA4	"COLO1T,COLO1N"	100	745	"L1PA3,AT_rich"		AY660577		cXp10894660FS	ACTCTAAAGAGACAGACACTTGGC	cXp10894660ES	TACCCAAAGGACTATAAATCATGC
chrX	11446266	11446732	11536345	11536811	-	105	466	7	L1PA10	"COLO1T,COLO1N"	132	466	"AluJr,L1PA2,(T)n"		ARHGAP6		cXp11446499FS	AATAAAATAATCATGCAACATCCC	cXp11446499ES	TCATTCTCAGTAAACTATCGCAAG
chrX	11567471	11567674	11657550	11657753	-	10	203	3	noL1	"COLO1T,COLO1N"	1	65	L1PA6		ARHGAP6		cXp11567572FS	TTTAAACCCAGAGTCTAAGGAATG	cXp11567572ES	CTTTTAAAAATCCAATGGTTAAGG
chrX	11641265	11641761	11731344	11731840	+	2801	496	27	L1HS	"COLO1T,COLO1N"	11777	497	"L1MB8,L1HS"	LINE:dbRIP			cXp11641513FS	GTTTGTTAGAAAGACATGATGCAG	cXp11641513ES	TCATTCTCAGTAAACTATCGCAAG
chrX	11862802	11863365	11952881	11953444	-	165	563	14	L1HS	"COLO1T,COLO1N"	1423	573	"L1HS,L2b"	"LINE:dbRIP,Ewing"			cXp11863083FS	GAGATGATAACTTGAGGAAGGAAG	cXp11863083ES	TGGGAGATATACCTAATGCTAGATG
chrX	14061531	14061946	14151610	14152025	-	578	415	10	noL1	"COLO1T,COLO1N"	4920	589	AmnSINE1	"LINE:Ewing,Iskow,Stewart"			cXp14061738FS	ATCTGCTAAATATTGTGTTCATGC	cXp14061738ES	AAGAGAAAATACTGGACTCACCAC
chrX	16983991	16984509	17074070	17074588	+	19875	518	51	L1HS	"COLO1T,COLO1N"	66086	766	"L1HS,(A)n,AluY"		REPS2		cXp16984250FS	TTTTTAGTAGAGATGGGGTTTCAC	cXp16984250ES	TCATTCTCAGTAAACTATCGCAAG
chrX	17111623	17112123	17201702	17202202	-	7082	500	43	L1PA3	"COLO1T,COLO1N"	25875	512	"L2a,L1PA3"				cXp17111873FS	AAGAGTAAAGCAATACCAGTGACC	cXp17111873ES	TCATTCTCAGTAAACTATCGCAAG
chrX	19867967	19868376	19958046	19958455	-	119	409	6	L1PA2	"COLO1T,COLO1N"	474	77	"L1PA2,L1MB4,MLT1J"		CXorf23		cXp19868171FS	CAATACAAATGTCCACAGAAAAAC	cXp19868171ES	TCATTCTCAGTAAATTATCGCAAG
chrX	20705304	20705886	20795383	20795965	+	48	582	6	L1PA5	"COLO1T,COLO1N"	35	581	"L1PA13,L1PA5"				cXp20705595FS	AAATGTCTATTCAGATCTTTTGCC	cXp20705595ES	AACACTGCATGTTCTCACTCATAG
chrX	22736795	22736987	22826874	22827066	+	521	192	5	noL1	COLO1T	0	0	L1MA8				cXp22736891FS	TGCCCTTTATTAAATAGACTGTCC	cXp22736891ES	CACTCTTGCAATTTTTATTCAATG
chrX	23172540	23172902	23262619	23262981	+	66	362	16	L1HS	"COLO1T,COLO1N"	280	366	"MER4-int,L1HS"				cXp23172721FS	CCAAAGTGATAACTCAAGGATTTC	cXp23172721ES	TCATTCTCAGTAAACTATCGCAAG
chrX	23351151	23351273	23441230	23441352	-	12	122	2	L1PA4	"COLO1T,COLO1N"	45	368	L1M2				cXp23351212FS	TTTGCTTTGACTTTAGACAGTTTG	cXp23351212ES	TGATGAGTTCATGTCCTTAGTAGG
chrX	23383771	23383879	23473850	23473958	-	10	108	2	noL1	"COLO1T,COLO1N"	3	108	L1PA4				cXp23383825FS	TTGAATCTATAAATTACCTTGGGC	cXp23383825ES	ATCCTCAATAAAATACTGGCAAAC
chrX	24237683	24238169	24327762	24328248	+	393	486	23	L1HS	"COLO1T,COLO1N"	919	492	"L1HS,L1MB2,(A)n"				cXp24237926FS	AGCCATTGTTCTACTTTCTTTCTC	cXp24237926ES	AAAATGGATTTTCAAATGTTTCAC
chrX	26241576	26242501	26331655	26332580	-	4016	925	28	L1HS	"COLO1T,COLO1N"	18446	930	"L1HS,L1MA6"				cXp26242038FS	AATATGAGTATGCAGGAGGTTTTG	cXp26242038ES	GGATTCTTACATTCTGTTGGTAGG
chrX	27152309	27152613	27242388	27242692	-	60	304	4	L1PA3	"COLO1T,COLO1N"	52	275			BC024027		cXp27152461FS	TGCATAAATTCTTTGTCAGAAAAC	cXp27152461ES	ACACCGCATATTCTCACTCATAG
chrX	27358048	27358671	27448127	27448750	-	16	623	2	noL1	"COLO1T,COLO1N"	20	620	AluJb				cXp27358359FS	TCATAAATAAAACTATACGCGCAC	cXp27358359ES	TTTATATTCAAAATACACGAAGGC
chrX	28140869	28141226	28230948	28231305	+	17	357	5	L1PA2	"COLO1T,COLO1N"	123	357					cXp28141047FS	TCAGTTGAATTTACATGGCTGTAG	cXp28141047ES	ACACCGCATATTCTCACTCATAG
chrX	30064500	30064825	30154579	30154904	-	114	325	11	L1PA4	"COLO1T,COLO1N"	377	342	"L1ME3A,L1PA4"				cXp30064662FS	TATTTATCGGTCATTATTCACAGC	cXp30064662ES	ATTGGTTTATCTTTTTCAGATTGG
chrX	30254734	30254956	30344813	30345035	+	10	222	2	L1PA3	"COLO1T,COLO1N"	6	71	"L1PA3,L2c,MIRb"				cXp30254845FS	TTACCTGAAAACTAATCGTATGCC	cXp30254845ES	TCATTCTCAGTAAACTATCGCAAG
chrX	30349369	30349829	30439448	30439908	-	44	460	3	noL1	"COLO1T,COLO1N"	69	459	"AluYb8,AluJr4"				cXp30349599FS	GAATATTATTTGGCCATGAAAAAG	cXp30349599ES	AGTTTGTGATTCAGTTATCGTCTG
chrX	31457882	31458768	31547961	31548847	-	874	886	15	L1HS	"COLO1T,COLO1N"	2755	1154	"L1HS,L2b,(T)n"		DMD		cXp31458325FS	CCTGTGTGTAGCAAAGATAAGAAC	cXp31458325ES	GTATATACCAAGGTTACCCACTGC
chrX	32708932	32709186	32799011	32799265	+	73	254	2	noL1	"COLO1T,COLO1N"	126	254	"L2a,AluY"		DMD		cXp32709059FS	TGTCTTCTGTTTTTCAAATGTTTC	cXp32709059ES	ACAAAGTAGCCAGTAAGATCAAGG
chrX	33495348	33495705	33585427	33585784	+	103	357	7	noL1	"COLO1T,COLO1N"	208	394	"AluY,L1MA6"				cXp33495526FS	AATAGACACATAGACCAATGCAAC	cXp33495526ES	AATATTCTGGATGTTAACCCATTG
chrX	34747053	34747453	34837132	34837532	-	241	400	18	L1HS	"COLO1T,COLO1N"	6367	444	"L1MA9,L1HS,(TG)n"				cXp34747253FS	TGACCTACATCTTCCTATTTCCTC	cXp34747253ES	GATGAGTTCATATCCTTTGTAGGG
chrX	36098110	36098297	36188189	36188376	-	36	187	4	L1PA3	"COLO1T,COLO1N"	184	241	L1M4b				cXp36098203FS	CATATGTTCCTCTCATGTTTCATC	cXp36098203ES	ATGATGTGTTCATGTCCTTTGTAG
chrX	36342946	36343165	36433025	36433244	-	12	219	2	L1PA6	"COLO1T,COLO1N"	54	219					cXp36343055FS	CAATGAGTAAGGGGTACTAACTGG	cXp36343055ES	TAGACTGGATTAAGAAAATGTGGC
chrX	37308317	37308568	37423398	37423649	+	14	251	2	L1PA5	"COLO1T,COLO1N"	19	295	MIRb				cXp37308442FS	ACTTAAATAGGGGTCTGTCACTTG	cXp37308442ES	ATGATGAGTTCATGTCCTTTGTAG
chrX	37492430	37492544	37607490	37607604	+	77	114	9	noL1	"COLO1T,COLO1N"	113	392	"L1P3,AluSp"				cXp37492487FS	CTTTGTAGCTCTGGTAGAATTTGG	cXp37492487ES	CAGGAGAGATCTAAAATCAACACC
chrX	38036237	38036340	38151293	38151396	-	10	103	2	noL1	"COLO1T,COLO1N"	14	65	MLT1F1		RPGR		cXp38036288FS	AAAAGTCCTTTAACCTCATGTCAG	cXp38036288ES	AAGACTTCATTAAGGAGCTACGTC
chrX	41520374	41520674	41635430	41635730	+	106	300	7	L1PA3	"COLO1T,COLO1N"	493	454	"L1ME3B,Tigger3b"		CASK		cXp41520524FS	TCTTCCCATTTATTTAGCTCTTTG	cXp41520524ES	AATGCTAGATGACAAGTTAGTGGG
chrX	43050182	43050396	43165238	43165452	-	6503	214	21	L1HS	"COLO1T,COLO1N"	24458	325	"L1HS,AluJo"				cXp43050289FS	TTATTAATGTCTTTCCATCATTGC	cXp43050289ES	GATGAGTTCATATCCTTTGTAGGG
chrX	43333414	43333873	43448470	43448929	+	113703	459	50	L1HS	"COLO1T,COLO1N"	220084	462	"LTR65,L1HS"				cXp43333643FS	GTTTACATATGAGTTTGCCTTTCC	cXp43333643ES	TTGTAAATTTGTTTGAGTACACCG
chrX	45334313	45334890	45449369	45449946	+	182	577	13	L1HS	"COLO1T,COLO1N"	3645	578	"L1HS,L1MA2"				cXp45334601FS	TGAAACAAATGATAATGGAAACAC	cXp45334601ES	ACACCGCATATTCTCACTCATAG
chrX	45798703	45798975	45913759	45914031	-	14	272	2	L1PA4	"COLO1T,COLO1N"	28	273	"L1PA4,AluY"				cXp45798839FS	TCAAATACCCTTTATTTGCTTCTC	cXp45798839ES	TACCATTCCTTCTGAAACTATTCC
chrX	47653614	47653992	47768670	47769048	-	212	378	9	L1PA3	"COLO1T,COLO1N"	1323	430	"(TTTG)n,L1PA3,L1PREC2,L1M5"		ZNF81		cXp47653803FS	TTTCTACTTTCATCTGAGTTGTGG	cXp47653803ES	TCATTCTCAGTAAACTATCGCAAG
chrX	47976176	47976763	48091232	48091819	-	826	587	25	L1HS	"COLO1T,COLO1N"	1376	515	"L1HS,MER11C,(T)n,MER65-int,MER4B"				cXp47976469FS	CAAAGTGCTAGGATTACAGTTGTG	cXp47976469ES	TGGGAGATATACCTAATGCTAGATG
chrX	48140627	48140759	48255683	48255815	-	400	132	10	L1PA4	"COLO1T,COLO1N"	1916	134	L1PA4				cXp48140693FS	AACCCCCGTCTCTACTAAAAATAC	cXp48140693ES	CAAATGTCCAACAATGATAGACTG
chrX	49617433	49618006	49730693	49731266	-	64835	573	56	L1HS	"COLO1T,COLO1N"	201058	587	"L1HS,L1M5"		CLCN5		cXp49617719FS	GGCTTTATATATTGTTGGATTTGC	cXp49617719ES	ACACCGCATATTCTCACTCATAG
chrX	49670430	49670875	49783690	49784135	-	10138	445	27	L1HS	"COLO1T,COLO1N"	27454	746	"L1MD3,T-rich,L1HS,L1MA5A"		CLCN5		cXp49670652FS	AGGGTAATGAATTAAGAAGGGTTC	cXp49670652ES	TCATTCTCAGTAAACTATCGCAAG
chrX	49680132	49680526	49793392	49793786	-	82	394	6	L1PA4	"COLO1T,COLO1N"	125	412	"L1PA4,L1M5"		CLCN5		cXp49680329FS	TCTGTCTCTTTCTCTAATTTTGGG	cXp49680329ES	AAACTATTGCAAGGACAAACAAC
chrX	49764786	49765242	49878046	49878502	+	27	456	4	noL1	"COLO1T,COLO1N"	76	66	"MER5A1,(A)n,MER4B"				cXp49765014FS	GAAGTCTCATGTCTCCCTAAAATG	cXp49765014ES	CAAACTTACAGACACAAGTGATCC
chrX	50222100	50222676	50205360	50205936	-	12	576	3	noL1	"COLO1T,COLO1N"	29	70	(T)n		DGKK		cXp50222388FS	CCTAATTCTTTTTCTTTTGGACAG	cXp50222388ES	CACACACAAAATCTCTTTCTCAAG
chrX	50717622	50717964	50700882	50701224	+	362	342	5	L1PA6	"COLO1T,COLO1N"	1935	346	"L1M4c,L1PA6"				cXp50717793FS	GTTGGAAGAGTTAGAGAAGGATTG	cXp50717793ES	AAACTATGACAAGGACAGAAAACC
chrX	51631048	51631173	51614308	51614433	-	13	125	4	L1PA5	"COLO1T,COLO1N"	36	125	L1PA4		MAGED1		cXp51631110FS	TGACAAATGGACCTCATGTTATAG	cXp51631110ES	GGCACTATTCACAATAGCAAAGAC
chrX	51771763	51772184	51755023	51755444	+	10	421	2	L1PA5	"COLO1T,COLO1N"	25	432	"L1PA5,AluY"				cXp51771973FS	TTAAATTTGCATTTCTAAAGGGAC	cXp51771973ES	TAGACTGGATTAAGAAAATGTGGC
chrX	53937654	53938238	53920929	53921513	+	11	584	4	L1PA4	"COLO1T,COLO1N"	13	620	"L1PA15,L1PA4,AluSz"				cXp53937946FS	TTTTTAGTAGAGATGGGGTTTCAC	cXp53937946ES	GAGGGATAGCATTAGGAGATACAC
chrX	54161454	54161911	54144729	54145186	-	2321	457	22	L1HS	"COLO1T,COLO1N"	3181	1246	"L1MD2,L1HS"		FAM120C		cXp54161682FS	CTAAAAATACAAAATTAGCTGGGC	cXp54161682ES	TCATTCTCAGTAAACTATCGCAAG
chrX	54953073	54953438	54936348	54936713	+	18	365	3	L1PA3	"COLO1T,COLO1N"	102	407	"L1PA3,L1MEf"				cXp54953255FS	TATGAGACATAACTTGAAAGCAGC	cXp54953255ES	TGGAAATCATCATTCTCAGTAAAC
chrX	55601486	55601923	55584761	55585198	-	5182	437	25	noL1	"COLO1T,COLO1N"	7550	567		"LINE:dbRIP,Ewing,Iskow,Stewart"			cXp55601704FS	ATCCTCCATAATAGCTGATCTCAC	cXp55601704ES	TTAAGGTTAATAAGTGGTTGACCC
chrX	56207833	56207952	56191108	56191227	-	35	119	10	L1HS	"COLO1T,COLO1N"	63	136	"L1HS,L3,(T)n"				cXp56207892FS	CAATGCAGAAAGCATGATAGTAAG	cXp56207892ES	TTTGCTATTGTGAATAAAATGTGG
chrX	56413193	56413950	56396468	56397225	-	108	757	4	noL1	"COLO1T,COLO1N"	134	560	L1PA3				cXp56413571FS	TAGGTATATCTCCCAATGCTATCC	cXp56413571ES	AAAATGGGAGAAAATTTACACAAC
chrX	56745017	56745575	56728292	56728850	+	211509	558	101	L1HS	"COLO1T,COLO1N"	379178	625	"L2a,L1HS"				cXp56745296FS	GCATTTTAATTTCTCTCTCTGCTC	cXp56745296ES	TGGGAGATATACCTAATGCTAGATG
chrX	57398238	57398382	57381513	57381657	-	67	144	4	noL1	"COLO1T,COLO1N"	246	131	MIRb		FAAH2		cXp57398310FS	GAAAATTGAGATAAAAAGACTAAGGG	cXp57398310ES	ATGGCATGAAAAGGAGTAAAATAG
chrX	58176158	58176400	58159433	58159675	-	43	242	9	L1PA2	"COLO1T,COLO1N"	197	438	HSAT4				cXp58176279FS	CATTTTAATTATAGGGTCACCTGG	cXp58176279ES	TCATTCTCAGTAAACTATCGCAAG
chrX	58512272	58512721	58495547	58495996	+	1794	449	30	L1HS	"COLO1T,COLO1N"	6245	686	"(TAAAAA)n,L1HS,AT_rich,ALR/Alpha"				cXp58512496FS	ATGAATGCACACATCAGAAATAAG	cXp58512496ES	TCATTCTCAGTAAACTATCGCAAG
chrX	61691261	61691489	61774536	61774764	+	10	228	2	noL1	"COLO1T,COLO1N"	21	228	ALR/Alpha				cXp61691375FS	ACTAGGAAAGGGAACTCACAGAC	cXp61691375ES	ATTGAACCTATCTTCTGATTGAGC
chrX	61697752	61698059	61781027	61781334	+	13	307	5	L1PA3	"COLO1T,COLO1N"	61	307	L1PA3				cXp61697905FS	ATTTTGTGTGTTTTGTTTTTGTTG	cXp61697905ES	TCATTCTCAGTAAACTATCGCAAG
chrX	63149373	63149926	63232648	63233201	-	4910	553	28	L1HS	"COLO1T,COLO1N"	13164	919	"L1PA10,L1HS,(T)n"				cXp63149649FS	AGATTCAATTTTATTCCCATCAAG	cXp63149649ES	TCATTCTCAGTAAACTATCGCAAG
chrX	63250159	63250848	63333434	63334123	-	3560	689	37	L1HS	"COLO1T,COLO1N"	65583	692	"L1PA3,L1HS"				cXp63250503FS	CATTTCATCTTCCATCACTGATAC	cXp63250503ES	GAGGGATAGCATTGGGAGATATAC
chrX	64347737	64348037	64431012	64431312	+	2050	300	14	L1HS	"COLO1T,COLO1N"	13044	390	"L1PA11,L1P3,MIRb"				cXp64347887FS	ATTTTAAGTTGTTAGGCCAATCTG	cXp64347887ES	TCATTCTCAGTAAACTATCGCAAG
chrX	65273033	65273599	65356308	65356874	-	5237	566	30	L1HS	"COLO1T,COLO1N"	8646	566	"L1MA1,L1HS,AT_rich"				cXp65273316FS	TAGAATGAGTTTCGAAGTATTCCC	cXp65273316ES	ACACCGCATATTCTCACTCATAG
chrX	65316613	65317323	65399888	65400598	-	2169678	710	74	L1HS	"COLO1T,COLO1N"	6720963	813	"L1PB1,L1HS"		HEPH		cXp65316968FS	CTACTCACTTTTGGTTTCCTTTTG	cXp65316968ES	TAATGCTAGATGACACGTTAGTGG
chrX	65427546	65427820	65510821	65511095	-	28	274	4	L1PA3	"COLO1T,COLO1N"	140	382	L1MA1				cXp65427683FS	TTGTTTTTCAGATTAATCCCTGTAG	cXp65427683ES	TGGAAATCATCATTCTCAGTAAAC
chrX	65781169	65781454	65864444	65864729	-	25	285	3	L1PA5	"COLO1T,COLO1N"	1	65	"L1PA5,L2"				cXp65781311FS	GCCTATAACTTCTTCCCTAATTCC	cXp65781311ES	CAAATGTCCAACAATGATAGACTG
chrX	66085099	66085472	66168374	66168747	+	78	373	5	L1PA2	"COLO1T,COLO1N"	196	831	"L1PA2,L1PA4,A-rich"				cXp66085285FS	TATATCTCCTAATGCTATCCCTCC	cXp66085285ES	AACTAGAAATACCATTTGACCCAG
chrX	66106779	66106914	66190054	66190189	-	70	135	3	L1PA7	"COLO1T,COLO1N"	632	374	"(TTA)n,L1PA7"				cXp66106846FS	GAAGCATACACAAGTATGAACAGC	cXp66106846ES	ATAGACTGGATGAAGAAAATGAGG
chrX	66131673	66131777	66214948	66215052	+	11	104	3	noL1	"COLO1T,COLO1N"	6	106	L1P3				cXp66131725FS	TGAAAATAAAGAACCAGGTAAAGG	cXp66131725ES	CATAGAAGAACAATCTGGCAGTC
chrX	66306414	66306736	66389689	66390011	+	7437	322	11	L1HS	"COLO1T,COLO1N"	20548	324	"L1HS,L1PA3"				cXp66306575FS	AATGCAAATTGAAAATACAATGG	cXp66306575ES	GATGAGTTCATATCCTTTGTAGGG
chrX	66628961	66629062	66712236	66712337	+	13	101	3	noL1	"COLO1T,COLO1N"	19	101	L1PA4				cXp66629011FS	GAATCTATAAATTACCATGGGCAG	cXp66629011ES	GATGCAAAAATCCTCAATAAAATC
chrX	66648746	66649238	66732021	66732513	+	10	492	4	L1PA6	"COLO1T,COLO1N"	34	492	"L1PA4,L1PA6"				cXp66648992FS	GATATTGATTCTTCCTATCCATGC	cXp66648992ES	CCCCTTTATCATTTTTATTGTGTC
chrX	66888522	66888758	66971797	66972033	+	12	236	6	L1PA6	"COLO1T,COLO1N"	53	80	"L1MD1,L1P2,L1PA6"				cXp66888640FS	AGTATATTGCTTTGCACCATTTTC	cXp66888640ES	CAGAGCATGGGATACCTATTAGAG
chrX	67179882	67180460	67263157	67263735	+	97265	578	38	L1HS	"COLO1T,COLO1N"	411291	846	L1HS		OPHN1	OPHN1.L	cXp67180171FS	TTCAAAAAGTAAAAAGGTCCTCAC	cXp67180171ES	ACACCGCATATTCTCACTCATAG
chrX	67236802	67237348	67320077	67320623	-	28	546	2	noL1	"COLO1T,COLO1N"	24	546	"(CA)n,AluY,L1MC5"		OPHN1		cXp67237075FS	TCTTTTTCCATCCTTAGGTATCTG	cXp67237075ES	GTGAAACCCCATCTCTACTAAAAG
chrX	67269297	67269596	67352572	67352871	+	16	299	6	L1PA2	"COLO1T,COLO1N"	94	376	(A)n		OPHN1		cXp67269446FS	TTGTTCTGCTAGTTTGGTATTGAG	cXp67269446ES	TTGTCAGTAAACTATCGCAAGAAC
chrX	69123939	69124115	69207214	69207390	+	10	176	3	L1PA2	"COLO1T,COLO1N"	21	299	L1MDa		EDA		cXp69124027FS	GTAGTGGATTAAGAGCAAGCTGTC	cXp69124027ES	GAAATTGGAAACCATTATTCTCAG
chrX	70415373	70415629	70498648	70498904	-	22	256	4	noL1	"COLO1T,COLO1N"	342	70	L2c				cXp70415501FS	AACTGTAGATGTTTTTCAGGCTTC	cXp70415501ES	TGGAGGAGATATGCTAGGAGATAG
chrX	70424436	70424651	70507711	70507926	-	10	215	5	noL1	"COLO1T,COLO1N"	37	69	"AT_rich,AluJo"		NONO		cXp70424543FS	TTTTAGTAGAGACAGGGTTTCACC	cXp70424543ES	AAAAGAAAAGATAAATAGGCTGGG
chrX	71229122	71229230	71312397	71312505	-	50	108	2	noL1	"COLO1T,COLO1N"	37	481	L2a	"LINE:Ewing,Iskow,Stewart"			cXp71229176FS	AAGAATTAATGCATAAGTGAACCC	cXp71229176ES	TTAACTTGAAAAATGACACGAATC
chrX	71805709	71805982	71888984	71889257	-	107	273	6	L1PA4	"COLO1T,COLO1N"	465	331	"(TTG)n,L1PA4,MST-int"		PHKA1		cXp71805845FS	GACTCAAAAGTCCAAAATCTCATC	cXp71805845ES	TTCTCAGCAAACTATCACAGAGAC
chrX	72176448	72176557	72259723	72259832	+	11	109	2	L1PA2	"COLO1T,COLO1N"	38	109	L1M3				cXp72176502FS	TTGAGATCTGGTTGTTTAAAAGTG	cXp72176502ES	TGGAAAACATCATTCTCAGTAAAC
chrX	72523519	72523968	72606794	72607243	+	422822	449	76	L1HS	"COLO1T,COLO1N"	926065	478	"L1M4b,L1HS"				cXp72523743FS	AATACCCTATTCTGTCATTTTTGG	cXp72523743ES	TCATTCTCAGTAAACTATCGCAAG
chrX	73900340	73900639	73983615	73983914	-	13	299	3	noL1	"COLO1T,COLO1N"	306	108	L1PA5		KIAA2022		cXp73900489FS	GTTTCCAATTCTGTGAAGAAAGTC	cXp73900489ES	TCAACATATCCAAATCAATAAACG
chrX	74128988	74129230	74212263	74212505	+	107	242	10	L1HS	"COLO1T,COLO1N"	221	260	"L1MA1,L1HS"				cXp74129109FS	CTTCACTATTGTAAACAGTGCTGC	cXp74129109ES	CAAATGTCCAACAATGATAGACTG
chrX	74559044	74559394	74642319	74642669	-	638	350	16	L1PA3	"COLO1T,COLO1N"	4075	352	L1PA3		ZDHHC15		cXp74559219FS	CCAGTTTAATCACTTCACACAAAC	cXp74559219ES	TTTAAAATGAGAACACATGGACAC
chrX	74573750	74573882	74657025	74657157	-	16	132	5	L1PA3	"COLO1T,COLO1N"	108	142	"L1PB1,L1PA3"		ZDHHC15		cXp74573816FS	TATCTTGAATAATGTTCCATGTGC	cXp74573816ES	GATGAGTTCATATCCTTTGTAGGG
chrX	74646795	74647055	74730070	74730330	-	51	260	4	L1PA2	"COLO1T,COLO1N"	70	358	"T-rich,MER5A"		ZDHHC15		cXp74646925FS	CCCACTTTTTCTCTTAGATGTTTC	cXp74646925ES	CTCACTTATAGGTGGGAATTGAAC
chrX	74678168	74678388	74761443	74761663	+	22	220	2	L1PA3	"COLO1T,COLO1N"	99	270	THE1D-int				cXp74678278FS	AGGCTGAGGTAGTCTCAGATAAAG	cXp74678278ES	AACATCGCATATTCTCACTCATAG
chrX	74697493	74697864	74780768	74781139	-	57	371	7	L1PA3	"COLO1T,COLO1N"	174	372	"L1MA9,L1PA3,L1PA2"				cXp74697678FS	AGTTTGATCTCAGACTGCTGTG	cXp74697678ES	AGATGAGTTCATGCCCTTTTTAG
chrX	75459062	75459646	75542658	75543242	-	1314	584	14	L1HS	"COLO1T,COLO1N"	11790	552	"L1HS,L1M1"				cXp75459354FS	AAACTGGAAGTGGAAGAAACATAC	cXp75459354ES	AAAAACCAAACACCACATATTCTC
chrX	75865959	75866614	75949555	75950210	+	8880	655	39	noL1	"COLO1T,COLO1N"	45311	657	L1PB1	"LINE:Ewing,Iskow"	AK311342		cXp75866286FS	TGTTCTTGTTTCTCTAGTTGCTTG	cXp75866286ES	CAAACTTCATAGAAACAGTGGTTG
chrX	76025119	76025404	76108720	76109006	+	122	285	10	L1PA4	"COLO1T,COLO1N"	310	342	"L1PA4,L1PA6"		AK311342		cXp76025261FS	TCCTGGATATCCTTGTTAAACTTC	cXp76025261ES	TAGACTGGATTAAGAAAATGTGGC
chrX	76328316	76328548	76411925	76412157	+	201	232	7	noL1	"COLO1T,COLO1N"	909	120	"L1PA7,L1PA17"	LINE:Iskow			cXp76328432FS	CGTATGTTTATTGTGGCACTATTC	cXp76328432ES	AGGTTGATTCCATAGTTTTGCTAC
chrX	76341537	76342004	76425144	76425622	-	459760	467	83	L1HS	"COLO1T,COLO1N"	1055382	1109	"L1HS,L1PA7"				cXp76341770FS	TAGTTTCAGAAGGAAAGGTACCAG	cXp76341770ES	TCATTCTCAGTAAACTATCGCAAG
chrX	76902341	76902839	77015685	77016183	+	15	498	3	noL1	"COLO1T,COLO1N"	32	622	"L1PA2,MER33,L1ME3C"		ATRX		cXp76902590FS	ACATGAACAACAGAAAGATGCTAC	cXp76902590ES	CCTTTGAGAGTCATGTCAGTAATC
chrX	77199886	77200372	77313230	77313716	-	31273	486	37	L1HS	"COLO1T,COLO1N"	133950	660	"L1HS,MER4A1,THE1D"				cXp77200129FS	AGAGGTTTAATTGACTCACAGTCC	cXp77200129ES	TAGATTCTGGATATTAGCCCTTTG
chrX	77587634	77588069	77700978	77701413	-	32	435	2	noL1	"COLO1T,COLO1N"	45	65	"L1PA4,L1MB7"				cXp77587851FS	TTCCTTTCTTGAGATACCTTTGTC	cXp77587851ES	AACTAGAAATACCATTTGACCCAG
chrX	77995851	77996095	78109195	78109439	-	46	244	4	L1PA3	"COLO1T,COLO1N"	127	244	Charlie15a				cXp77995973FS	AAACACAGTTAATTTGCTAAAGGG	cXp77995973ES	TCATTCTCAGTAAACTATCGCAAG
chrX	78949066	78949526	79062410	79062870	-	16	460	3	L1PA2	"COLO1T,COLO1N"	34	489	L1M1				cXp78949296FS	CTTCATTGACTCACTGGTATTCAG	cXp78949296ES	AATGCTAGATGACAAGTTAGTGGG
chrX	79679016	79679556	79792360	79792900	+	91	540	30	L1HS	"COLO1T,COLO1N"	206	542	"L1HS,(A)n,L1PA13"				cXp79679286FS	CAATTGTAAATGAGAGTTTGTTCG	cXp79679286ES	TCATTCTCAGTAAACTATCGCAAG
chrX	80049816	80049934	80163160	80163278	+	27	118	2	L1PA4	"COLO1T,COLO1N"	49	319	L1PA7	Alu:Stewart			cXp80049875FS	TGTATTTCCTGAATTTGAATGTTG	cXp80049875ES	GTTTGAGTAATTGGCAGAAATAGG
chrX	80934319	80934584	81047663	81047928	+	41	265	4	noL1	COLO1T	0	0	L1PA4				cXp80934451FS	GAATCTGACAATTATGTGTCTTGG	cXp80934451ES	ACATTCCTTATTGTTTTTCACAGG
chrX	80989287	80989738	81102631	81103082	+	1511	451	17	L1HS	"COLO1T,COLO1N"	1847	451	"L1MC3,L1HS"	LINE:dbRIP			cXp80989512FS	CTATTTCACAAAGATTCATCCTCC	cXp80989512ES	TCATTCTCAGTAAACTATCGCAAG
chrX	81632858	81633366	81746202	81746710	-	892	508	16	L1HS	"COLO1T,COLO1N"	4254	508	"L1PB1,L1HS,L1M4"	LINE:dbRIP			cXp81633112FS	CAATGAGTGGATAAAGAAAATGTG	cXp81633112ES	TCATTCTCAGTAAACTATCGCAAG
chrX	82201147	82201314	82314491	82314658	-	31547	167	27	L1HS	"COLO1T,COLO1N"	70306	896	"L1HS,Ricksha_c"	LINE:dbRIP			cXp82201230FS	TCTCAGTACCAGCAGCAAATATAC	cXp82201230ES	TCATTCTCAGTAAACTATCGCAAG
chrX	82682583	82682818	82795927	82796162	-	17	235	2	L1PA4	"COLO1T,COLO1N"	62	318	L1PA4				cXp82682700FS	ATCTTTGCTCACTGCAAGCTC	cXp82682700ES	CAGCATCTCAAGTAGAAATCAATG
chrX	82690034	82690256	82803378	82803600	+	28	222	9	L1HS	"COLO1T,COLO1N"	51	410	L1HS				cXp82690145FS	TTATGGAAATCCTTTTTACAGACC	cXp82690145ES	CAAATGTCCAACAATGATAGACTG
chrX	83578087	83578449	83691431	83691793	+	21	362	4	L1PA2	"COLO1T,COLO1N"	231	437	L1MA5A		HDX		cXp83578268FS	AGATCCAAAAGGACAGATAGACTG	cXp83578268ES	TCATTCTCAGTAAACTATCGCAAG
chrX	83914843	83915422	84028187	84028766	-	21783	579	27	L1HS	"COLO1T,COLO1N"	32148	891	"L1HS,MIRc"				cXp83915132FS	TTTCTGTTATGAGCATTTTCTCTG	cXp83915132ES	TCAGATTTATAAAAAGGTTCCCAG
chrX	84127430	84127971	84240774	84241315	-	12	541	2	noL1	"COLO1T,COLO1N"	4	538	L1PA8				cXp84127700FS	TTTTCTAACATATTGATCTGCTGC	cXp84127700ES	ATTAGAGAAATGCAAATCAAAACC
chrX	85496437	85497152	85609781	85610496	+	27	715	6	L1HS	"COLO1T,COLO1N"	207	438	"L1HS,L1PA15,(CAAAA)n"		DACH2		cXp85496794FS	GGGAATGCTTATACACTATTGGTC	cXp85496794ES	GGAGGGATAGTATTGGGAGATATAC
chrX	85587153	85588007	85700497	85701351	-	147333	854	57	L1HS	"COLO1T,COLO1N"	245427	863	"L1HS,L1MA6"		DACH2		cXp85587580FS	CATATGTAACTAACCTGCACAATG	cXp85587580ES	TAATGCTAGATGACACGTTAGTGG
chrX	86968795	86969653	87082139	87082997	-	5410	858	20	L1HS	"COLO1T,COLO1N"	8161	502	"L1M4c,L1HS,L1MA4A,L1PA4"				cXp86969224FS	ATGAGTTCATGTCCTTTGTATGG	cXp86969224ES	TAATAGATTCCAGAGGGTGAGAAG
chrX	87953285	87953491	88066629	88066835	-	36	206	2	noL1	COLO1T	0	0	L1PA16				cXp87953388FS	AGGTATAAGCTTCCAAAAGTCCTC	cXp87953388ES	CAAATCAAAACTGCAATGAGATAC
chrX	90835491	90835604	90948835	90948948	+	136	113	3	L1HS	"COLO1T,COLO1N"	112	622	"Tigger1,L1HS"	LINE:dbRIP			cXp90835547FS	AATTGAAAGTGTTACTCTGAACGC	cXp90835547ES	ATTTCTTTGCTCATCCATAAGAAC
chrX	91301802	91302353	91415146	91415697	-	10	551	4	noL1	"COLO1T,COLO1N"	20	556	L1PB1		PCDH11X		cXp91302077FS	ATAAGGCACTTATCATGAGACTCC	cXp91302077ES	AAAGGGAACACTTCTATACTGCTG
chrX	91362938	91363072	91476282	91476416	+	100	134	7	L1PA3	"COLO1T,COLO1N"	506	160	(CA)n		PCDH11X		cXp91363005FS	ACCCATAAAAGAGATTGTGAAAAG	cXp91363005ES	TGATGAGTTCATGTCCTTTGTAAG
chrX	92453400	92453784	92566744	92567128	+	404	384	13	L1HS	"COLO1T,COLO1N"	772	483	"L1MA9,L1HS,L1M1,(A)n"				cXp92453592FS	ACAGGTGTAATTTCTACAAGCCTC	cXp92453592ES	TCATTCTCAGTAAACTATCGCAAG
chrX	93087509	93088004	93200853	93201348	+	1096	495	17	L1PA2	"COLO1T,COLO1N"	4919	475	"(CA)n,L1PA3,L1PA2,L1PREC2"				cXp93087756FS	AGAGACTGGGTTTAACTAAGTTGG	cXp93087756ES	TCATTCTCAGTAAACTATCGCAAG
chrX	94010024	94010322	94123368	94123666	+	24	298	3	L1PA3	"COLO1T,COLO1N"	89	233	"L1PA3,L1MA3"				cXp94010173FS	ACTTATGGGTTCTTTATGCAGTTC	cXp94010173ES	TCATTCTCAGTAAACTATCGCAAG
chrX	94581710	94581830	94695054	94695174	+	17	120	6	L1PA3	"COLO1T,COLO1N"	68	180					cXp94581770FS	AATATACACTATGGAATTGGGTGC	cXp94581770ES	TCATTCTCAGTAAACTATCGCAAG
chrX	94743771	94744214	94857115	94857558	+	8104	443	33	L1HS	"COLO1T,COLO1N"	17641	473	"L1MA1,L1HS,AT_rich,(A)n"				cXp94743992FS	TTGGCATATAGAAATGCTACTGAC	cXp94743992ES	TCATTCTCAGTAAACTATCGCAAG
chrX	94951186	94951549	95064530	95064893	-	969	363	11	L1HS	"COLO1T,COLO1N"	2915	659	"L1MEf,L1HS"				cXp94951367FS	ATAAAGTCAAATTCTGAGGTACGG	cXp94951367ES	TCATTCTCAGTAAATTATCGCAAG
chrX	94994198	94994641	95107542	95107985	+	22	443	5	noL1	"COLO1T,COLO1N"	17	449	"L1MA1,L1PA3"				cXp94994419FS	GTTTCATTTGTAATGTCTCCCTTC	cXp94994419ES	AACTAGAAATACCATTTGACCCAG
chrX	95317294	95317686	95430638	95431030	+	188	392	11	L1PA3	"COLO1T,COLO1N"	193	375	"L1PA3,AT_rich,LTR8A"				cXp95317490FS	TATATCAGTGAGAAAATTATGGCG	cXp95317490ES	TCATTCTCAGTAAACTATCGCAAG
chrX	96997764	96997963	97111108	97111307	-	21	199	6	noL1	"COLO1T,COLO1N"	52	200	"AluSx,(TTCC)n,(TTTTC)n"				cXp96997863FS	CTCAATTCCTTAGTTTCTTTGAGC	cXp96997863ES	TAGATTCATTTGGTTCTTACCAGG
chrX	97559587	97560174	97672931	97673518	+	20	587	5	L1PA4	"COLO1T,COLO1N"	131	587	"AluJo,L1MB5,L1PA4"				cXp97559880FS	AGTTAGAGACCAACCTGGGTAAC	cXp97559880ES	AATGCTAAATGACAAGTTAATGGG
chrX	98150495	98150980	98263839	98264324	-	1030	485	17	noL1	"COLO1T,COLO1N"	2310	453	X2_LINE	"LINE:Ewing,Iskow,Stewart"			cXp98150737FS	GTTTTCCCATGTTTAGATATTCTG	cXp98150737ES	CATACTCTTAAAACTGCCACACTG
chrX	99699141	99699262	99812485	99812606	+	56	121	2	L1PA2	"COLO1T,COLO1N"	352	187	"L1MA2,L1PA2"				cXp99699201FS	TTATTTGTCTTTCGGATATAAGCC	cXp99699201ES	TAGACTGGATTAAGAAAATGTGGC
chrX	100992751	100993136	101106095	101106480	+	378	385	7	noL1	COLO1T	0	0	L1M4c		NXF5		cXp100992943FS	TTTGTATTTTTAGTAGAGACGGGG	cXp100992943ES	CTTTTTATGGCTGCATAGTATTCC
chrX	101000259	101000678	101113603	101114022	+	9960	419	32	L1HS	"COLO1T,COLO1N"	22616	507	"(CA)n,L1HS"				cXp101000468FS	TCACATAAAAATTGAAGACTCCTG	cXp101000468ES	GAACTAGTTTACAGTCCCACCAAC
chrX	101325934	101326254	101439278	101439598	+	11	320	2	noL1	"COLO1T,COLO1N"	247	323	L1PA5	LINE:Iskow			cXp101326094FS	ACTTCAGAATGACAAACTTCCAAC	cXp101326094ES	GCTGCAACACATATTGTTACTTTC
chrX	101331654	101332738	101444998	101446082	-	219	1084	20	L1PA3	"COLO1T,COLO1N"	1667	417	"L1PA3,L1PA6"				cXp101332196FS	GATCTTTCCTGCTTTCTCTTGTAG	cXp101332196ES	AACCAGTGAACATCATAATGACAG
chrX	102249842	102250216	102363186	102363560	+	70556	374	58	noL1	"COLO1T,COLO1N"	132753	256	LTR54	"LINE:Ewing,Iskow,Stewart"			cXp102250029FS	TTTTTAGTAGAGACAGTTTTCGCC	cXp102250029ES	AACACATGAGACATATCCAAACAG
chrX	103032561	103033115	103145905	103146459	-	105	554	3	L1PA2	"COLO1T,COLO1N"	284	554	"L1PA2,L1PA4,L1MA7"				cXp103032838FS	TGAAGAAAACACAGTGGAAATTAG	cXp103032838ES	ACCTAATGCTAGACGACGAGTTAG
chrX	103210951	103211276	103324295	103324620	-	248	325	4	L1PA8	"COLO1T,COLO1N"	604	85	L1PA2				cXp103211113FS	CAGAGCTTAAAACCTAGATGATGG	cXp103211113ES	AACTAGAAATACCATTTGACCCAG
chrX	103941732	103941916	104055076	104055260	+	10	184	3	L1PA3	"COLO1T,COLO1N"	88	378	"L1PA3,MLT1I"		IL1RAPL2		cXp103941824FS	CAATTAGGAATAGTGGATACTGGG	cXp103941824ES	AACACAAATGTCCAACAATGATAG
chrX	104035421	104035609	104148765	104148953	-	44	188	7	L1PA2	"COLO1T,COLO1N"	29	232	(TA)n		IL1RAPL2		cXp104035515FS	TTTTGTATTTTTAGTAGAAGCGGG	cXp104035515ES	AGGATGAGTTCATGTCCTTTGTAG
chrX	105122687	105122853	105236031	105236197	-	48	166	7	L1PA2	"COLO1T,COLO1N"	352	753	"L1PA2,L1M4,(TCCC)n"				cXp105122770FS	TTTGTAGTTTTCAGCACACAAATC	cXp105122770ES	CAAATGTCCAACAATGATAGACTG
chrX	105295944	105296194	105409288	105409538	-	21	250	5	L1PA2	"COLO1T,COLO1N"	38	250	"L1PA2,AT_rich,L1M5"				cXp105296069FS	TCCACATATATTTTTATCACCATTG	cXp105296069ES	CAAATGTCCAACAATGATAGACTG
chrX	105605152	105605834	105718496	105719178	+	311285	682	68	L1HS	"COLO1T,COLO1N"	726080	553	"AluSc8,L1HS,MER49"				cXp105605493FS	TATAATTTGGTGTCTTATTGCCAC	cXp105605493ES	TGGGAGATATACCTAATGCTAGATG
chrX	105943430	105943800	106056774	106057144	-	3538	370	23	L1PA3	"COLO1T,COLO1N"	31483	494	L1PA3		"MORC4,TBC1D8B"	MORC4.L	cXp105943615FS	ACTCCAGGAGGGAGTATTTAGAAC	cXp105943615ES	ATTGAACAATGAGAACACATGAAC
chrX	106166156	106166830	106279500	106280174	+	29900	674	54	L1HS	"COLO1T,COLO1N"	49357	674	"L1HS,L1MB4"				cXp106166493FS	TCCTGTTTCTTTGTATGTTTTGTG	cXp106166493ES	TAATGCTAGATGACACGTTAGTGG
chrX	106741620	106742145	106854964	106855489	-	138	525	14	L1HS	"COLO1T,COLO1N"	645	332	"AluSq2,L1HS,AluSx"				cXp106741882FS	CATCTGATTAACTGAACAAAGCAC	cXp106741882ES	TCATTCTCAGTAAACTATCGCAAG
chrX	107086208	107086597	107199552	107199941	-	85	389	8	L1PA8	"COLO1T,COLO1N"	203	389	"L1PA8,AluY"				cXp107086402FS	CTTTGTACCTCTGGTAGAATTTGG	cXp107086402ES	GACACCTGAACATCACAATAAAAG
chrX	108145698	108146369	108259042	108259713	+	54	671	3	L1PA5	"COLO1T,COLO1N"	273	78	"AluYd8,L1PA5"				cXp108146033FS	ATAGTGTCCCATGGTGTATATGTG	cXp108146033ES	GAAACCCCGTCTCTACTAAAAATAC
chrX	108780672	108780836	108894016	108894180	+	114	164	3	L1PA3	"COLO1T,COLO1N"	1050	319	L2a		ACSL4		cXp108780754FS	AACCAAATCATTTCTAAACTCGTC	cXp108780754ES	TCATTCTCAGTAAACTATCGCAAG
chrX	109352469	109352668	109465813	109466012	+	49	199	6	L1PA2	"COLO1T,COLO1N"	77	210	"L1PA2,A-rich"		AMMECR1		cXp109352568FS	CTAAATCAAATTCAGACCCAATTC	cXp109352568ES	TCATTCTCAGTAAACTATCGCAAG
chrX	110445912	110446489	110559256	110559833	+	42061	577	38	L1HS	"COLO1T,COLO1N"	162711	822	"L1HS,L1PREC2,AluSc"		DCX		cXp110446200FS	ATGTTTGTGCATTGATTTTGTATC	cXp110446200ES	GAGGGATAGCATTGGGAGATATAC
chrX	110846803	110847482	110960147	110960826	-	22	679	2	noL1	"COLO1T,COLO1N"	10	679	FAM				cXp110847142FS	CTGATACCTTCAAAATGGAAGAAC	cXp110847142ES	ATATAAGGAAATGCAACCTGTACC
chrX	111444281	111444396	111557625	111557740	-	10360	115	5	noL1	"COLO1T,COLO1N"	36855	358		"LINE:Ewing,Iskow,Stewart"	ZCCHC16		cXp111444338FS	TGTGAGAAAGTTATGCTCATCATC	cXp111444338ES	GAAGGTACATAAGAAAGGCAGAAG
chrX	113882180	113882943	113975924	113976687	+	71	763	8	noL1	"COLO1T,COLO1N"	14726	555	"AluSx4,L1MEf,L1MC4a"		HTR2C		cXp113882561FS	TTTAAACGCAGAATTAAGAAAACC	cXp113882561ES	AGCTACTCAGGAGACTGAGGC
chrX	113883064	113883467	113976808	113977211	-	3927	403	22	L1HS	"COLO1T,COLO1N"	14555	403	"L1MEf,L1HS"		HTR2C		cXp113883265FS	GAGCACTAAAATTTTGAAGAAACC	cXp113883265ES	TCATTCTCAGTAAACTATCGCAAG
chrX	115909565	115909678	116025537	116025650	+	89	113	4	noL1	"COLO1T,COLO1N"	55	65		"LINE:Ewing,Iskow"			cXp115909621FS	TTAGATTTATGCCATGTGTTAAGC	cXp115909621ES	AATCTTCCAGTACAGTTCCCATAG
chrX	115910619	115911128	116026591	116027100	-	16	509	3	noL1	"COLO1T,COLO1N"	11	351	L1MA9				cXp115910873FS	GTCTGGAAAAGTCTTTATTTCTGC	cXp115910873ES	TTCACATTATCCACATCATACCTC
chrX	116211573	116211980	116327545	116327952	+	37	407	4	noL1	"COLO1T,COLO1N"	202	409	"AluJb,L1MA2"				cXp116211776FS	TGGCATACAGATGTTCATAATACC	cXp116211776ES	CACAAAACAAGTCGTAAAACATTC
chrX	116859239	116859453	116975211	116975425	-	223	214	17	L1PA2	"COLO1T,COLO1N"	1267	312	"(TTTTA)n,L1PA2"				cXp116859346FS	AAATTTCTTCATGGTGAAAGACTG	cXp116859346ES	TCATTCTCAGTAAACTATCGCAAG
chrX	116982134	116982382	117098106	117098354	+	1476	248	10	L1HS	"COLO1T,COLO1N"	1898	197	L1HS		KLHL13		cXp116982258FS	AAAGTGCTCAGTTCTTTTTCAATC	cXp116982258ES	TATCTCATAGTGGTTTTGATTTGC
chrX	117109429	117109666	117225401	117225638	+	64	237	3	L1PA4	"COLO1T,COLO1N"	8	296	L1MDa		KLHL13		cXp117109547FS	AGTGAGAATACATGATGTTTGGTG	cXp117109547ES	AATGTTAAATGACGAGTTAATGGG
chrX	118195562	118195715	118311534	118311687	-	16	153	3	L1PA4	"COLO1T,COLO1N"	12	65	L1PA4				cXp118195638FS	ATGCTCAGAACAAGTCCAACTAC	cXp118195638ES	AATTGAACAATCAGAACACATGG
chrX	118453032	118453509	118569004	118569481	-	12556	477	37	L1HS	"COLO1T,COLO1N"	37503	454	"MER63A,L1HS,AT_rich,AluSz"	LINE:dbRIP	SLC25A43		cXp118453270FS	CAACATAGTGACACCACATCTCTG	cXp118453270ES	TCATTCTCAGTAAACTATCGCAAG
chrX	119776369	119776839	119892341	119892811	-	261	470	8	noL1	"COLO1T,COLO1N"	1284	469		"LINE:Ewing,Iskow,Stewart"			cXp119776604FS	TTTGTTATAGCAGCCTTAATAGCC	cXp119776604ES	AATAATTTTCCATTTTCACTGAGG
chrX	120224829	120225381	120397148	120397700	-	291	552	15	L1HS	"COLO1T,COLO1N"	2002	553	"(CA)n,L1MA9,L1HS,Tigger4b"				cXp120225105FS	TGGATGAATATCTTCCTATTTTCC	cXp120225105ES	ACACCGCATATTCTCACTCATAG
chrX	120323165	120323290	120495484	120495609	-	66	125	7	L1PA3	"COLO1T,COLO1N"	373	147	L1PB1				cXp120323227FS	AGTCTCCATACTGTTTTCCATAGC	cXp120323227ES	CAAATGTCCAACAATGATAGACTG
chrX	120690435	120690870	120862754	120863189	+	1659	435	13	L1PA2	"COLO1T,COLO1N"	4092	363	L1PA2				cXp120690652FS	TTGCATACAGCTATCAGTAGTTGAC	cXp120690652ES	TTCTCAGTAAACTATCGCAAGAAC
chrX	122491348	122492566	122663667	122664885	-	22079	1218	68	noL1	"COLO1T,COLO1N"	48249	957	L1PA11	"LINE:Ewing,Iskow"			cXp122491957FS	CTGTTGATAGTTTCTTTTGCTGTG	cXp122491957ES	TAAACAACTTCAGCAAAGTCTCAG
chrX	122696466	122697235	122868785	122869554	+	29	769	6	noL1	"COLO1T,COLO1N"	53	771	"SVA_D,L1PA5,(A)n"				cXp122696850FS	CATTTGGATTGTCTGTATTTTCTG	cXp122696850ES	CTTTGTTCACTTGTTTATCTGCTG
chrX	123943434	123943820	124115753	124116139	+	69	386	11	L1HS	"COLO1T,COLO1N"	310	391	"L1HS,(A)n"				cXp123943627FS	CAGAGATGTCTTCTTCAAATACCC	cXp123943627ES	AACACTGAATGCAATATGTTTGAC
chrX	124005686	124006146	124178005	124178465	+	23	460	7	L1PA2	"COLO1T,COLO1N"	52	187	"AluJr,L1PA2,A-rich"				cXp124005916FS	AAGGACTTGGATTTAATAGACGTG	cXp124005916ES	TCATTCTCAGTAAACTATCGCAAG
chrX	124905569	124906219	125077888	125078538	+	225087	650	71	L1HS	"COLO1T,COLO1N"	744204	650	"L1HS,L3"	LINE:dbRIP			cXp124905894FS	CTCTGTTCAAAAATTTCCAGTTTC	cXp124905894ES	TTTTTAAAACACTATGAAGGCCAG
chrX	125115043	125115353	125287362	125287672	-	39	310	2	L1PA3	"COLO1T,COLO1N"	237	434	L1PA3				cXp125115198FS	TAAAAGAAGTTTAATTGGCAGTCC	cXp125115198ES	AAACTAGTTCAACCATTCTGGAAG
chrX	126104643	126105071	126276962	126277390	+	140	428	4	L1PA7	"COLO1T,COLO1N"	1034	431	"L1MC1,L1PA7"				cXp126104857FS	TAAGGTACCAGTTTTCTTCTCCAG	cXp126104857ES	TCATTCTCAGCAAACTAAGACAAG
chrX	126329847	126330293	126502166	126502612	+	79	446	7	L1HS	"COLO1T,COLO1N"	473	447	"MSTA-int,L1HS"				cXp126330070FS	AAAATGTGGAAGCAACTTTAGAAC	cXp126330070ES	CCATCATTGTCAGTAAACTATTGC
chrX	126575233	126575447	126747552	126747766	+	14	214	3	L1PA3	"COLO1T,COLO1N"	92	214					cXp126575340FS	CACCTTCAATAAAGCCAAGTAAAC	cXp126575340ES	TCATTCTCAGTAAACTATCGCAAG
chrX	127880025	127880228	128052344	128052547	+	34	203	3	L1PA5	"COLO1T,COLO1N"	194	202	"L1PA2,L1PA5"				cXp127880126FS	AACATTGTAGAAAATCCAGTCTTTG	cXp127880126ES	AAACTATCGCAAGAACAAATAACC
chrX	128370307	128370408	128542626	128542727	-	24	101	2	L1PA3	"COLO1T,COLO1N"	54	111	(A)n				cXp128370357FS	AATGCTAGATGATGAGTTAGTGGG	cXp128370357ES	AGCATGATTTATTTCCTTTTCATC
chrX	129352562	129352951	129524881	129525270	-	6525	389	19	noL1	"COLO1T,COLO1N"	11603	435	"(TA)n,AluSx1,Tigger3a"	"LINE:dbRIP,Ewing,Iskow,Stewart"			cXp129352756FS	TTCTAGAGTCTTGGCTCACTTATG	cXp129352756ES	ATATACCCCAGATGTACAGTAGGC
chrX	129440308	129440461	129612627	129612780	+	1233	153	5	L1PA3	"COLO1T,COLO1N"	5494	261	"L1PA3,L1PA7"		BC043223		cXp129440384FS	CATAAACCAGTAGAGAGTGTGTGG	cXp129440384ES	ATGATGAGTTCATGTCCTTTGTAG
chrX	129463924	129464640	129636243	129636959	-	439	716	19	noL1	"COLO1T,COLO1N"	22	71	"AluJr,CT-rich"		BC043223		cXp129464282FS	TTATAAACTTCCTTCCTTCCTTCC	cXp129464282ES	TAGAGAGCAAAAGAGAGAAAGAGG
chrX	129485006	129485399	129657325	129657718	+	24	393	6	L1HS	"COLO1T,COLO1N"	786	393	"MADE1,L1HS"		BC043223		cXp129485202FS	TCTTGACTGCTCAGCTTTCAGC	cXp129485202ES	TCATTCTCAGTAAACTATCGCAAG
chrX	129747729	129748088	129920048	129920407	-	24	359	5	L1PA3	"COLO1T,COLO1N"	83	139	L1PA3		ENOX2		cXp129747908FS	AGAGAGTGATAACACACCTAAGGC	cXp129747908ES	ATGATGAGTTCATGTCCTTTGTAG
chrX	129910057	129910607	130082376	130082926	-	15803	550	39	L1HS	"COLO1T,COLO1N"	36142	583	"L1HS,MIR,MER91A"				cXp129910332FS	GAAAAGCCATCATTTTCTAATCTG	cXp129910332ES	TCATTCTCAGTAAACTATCGCAAG
chrX	129926584	129926965	130098903	130099284	+	20	381	6	L1PA2	"COLO1T,COLO1N"	134	383	"GA-rich,L1PA2,MER31A"				cXp129926774FS	TCCTCTTAGTAATTTTCCATCCAC	cXp129926774ES	TCATTCTCAGTAAACTATCGCAAG
chrX	129968143	129968576	130140462	130140895	+	120764	433	96	L1HS	"COLO1T,COLO1N"	257165	444	"L2,L1HS,AT_rich,MER5B"				cXp129968359FS	CAGAAGAGCTACTCTTTGAAGGAC	cXp129968359ES	TCATTCTCAGTAAACTATCGCAAG
chrX	130474766	130474920	130647085	130647239	+	13	154	3	L1PA4	"COLO1T,COLO1N"	79	294	L1PREC2		IGSF1		cXp130474843FS	AGCAAAGACCCTAAGTGCTTTAAC	cXp130474843ES	AAAATGATGAGTTCATGTCCTTTC
chrX	131110678	131110793	131282997	131283112	+	13	115	2	L1PA2	"COLO1T,COLO1N"	7	340	"L1M4b,Tigger3"				cXp131110735FS	ATATTCCTTACATCTTCCTGATGG	cXp131110735ES	AGGAAGAAAAAGGGACATACTTG
chrX	131159115	131159590	131331434	131331909	+	83	475	9	L1PA2	"COLO1T,COLO1N"	360	441	"L2c,L1PA2"				cXp131159352FS	AATCTAAGCTCCAGTTTCAGTGAC	cXp131159352ES	TCATTCTCAGTAAACTATCGCAAG
chrX	131242613	131242834	131414932	131415153	-	11	221	2	L1PA6	"COLO1T,COLO1N"	87	66	"L1MB7,L1PA6"		AK095439		cXp131242723FS	CATTGATCTCTTTGTCTTTGTGAC	cXp131242723ES	GGAACATTTAATTGGAAGTTCTTG
chrX	131683869	131684605	131856188	131856924	+	21	736	4	noL1	"COLO1T,COLO1N"	36	739	"L1MA2,AluY"		HS6ST2		cXp131684237FS	GATCCTTTGAATTTTTCCACTATC	cXp131684237ES	AAAAGAACCAGAGAAACAAGAGC
chrX	133030848	133031107	133203182	133203441	+	37	259	5	L1PA3	"COLO1T,COLO1N"	79	193	"(TAA)n,L1PA3,MLT1C"				cXp133030977FS	CAATCAAAGTAAGTTGCAGACATC	cXp133030977ES	TATCTGTGAATGTGACCCTATTTG
chrX	133681765	133682015	133854099	133854349	+	341	250	4	noL1	"COLO1T,COLO1N"	357	294	L1MB7				cXp133681890FS	TAATCCAAGGTCAGGAAGATTTAC	cXp133681890ES	TCAATGAAAAACAAACAAACAAAC
chrX	133989655	133990236	134161989	134162570	+	823	581	20	L1HS	"COLO1T,COLO1N"	5730	589	"L1HS,L1PB2"				cXp133989945FS	ATTTCAATAGTTTCTGGGGTACAG	cXp133989945ES	TAATGCTAGATGACACGTTAGTGG
chrX	136049338	136049658	136221672	136221992	+	18	320	3	L1PA4	"COLO1T,COLO1N"	33	319	"L1PA5,L1PA4"				cXp136049498FS	GGATCCTGTGGTAAGAGTATGTTC	cXp136049498ES	CAACAACGAGATACCACTCAATAC
chrX	136974109	136974526	137146443	137146860	+	2206	417	16	L1HS	"COLO1T,COLO1N"	291	424	L1HS	LINE:dbRIP			cXp136974317FS	TCATCATGTTAGAAGCAAGAAAAC	cXp136974317ES	GATGAGTTCATATCCTTTGTAGGG
chrX	137251351	137251576	137423685	137423910	-	101	225	5	L1PA3	"COLO1T,COLO1N"	321	239	L1PA3				cXp137251463FS	ATTGTTATTGCTTTTCCTGAGAAC	cXp137251463ES	TAGACTGGATTAAGAAAATGTGGC
chrX	137453800	137453926	137626134	137626260	-	187	126	6	L1PA2	"COLO1T,COLO1N"	250	82	L1PA2				cXp137453863FS	ATAAAAAGATCAAGAGTCCAGTCC	cXp137453863ES	GTTTCAGAAAGCAAATTTAAGAGG
chrX	138532708	138532912	138705042	138705246	+	26	204	4	noL1	"COLO1T,COLO1N"	142	399	L1PA4		MCF2		cXp138532810FS	TTTTCAGTCTCTGTGTTAGTTTGC	cXp138532810ES	ATGAAGCTAGAAACCATCATTCTC
chrX	139145204	139145900	139317538	139318234	-	10	696	5	noL1	"COLO1T,COLO1N"	31	695	L1PA5				cXp139145552FS	TATATCTCCTAATGCTATCCCTGC	cXp139145552ES	TGCACTACAAAAGAAACTACCATC
chrX	140038794	140039179	140211128	140211513	-	376	385	7	L1HS	"COLO1T,COLO1N"	927	434	"L1HS,L1MEc"				cXp140038986FS	GAACGACAAATACCTTGAAAAGAC	cXp140038986ES	TCATTCTCAGTAAACTATCGCAAG
chrX	140342465	140342921	140514799	140515255	-	22	456	4	noL1	"COLO1T,COLO1N"	770	456	L1MB5	LINE:Ewing	SPANX		cXp140342693FS	GTTAAAATGGTGATACTACCCAGG	cXp140342693ES	GTACTTATTGGCCATTTGTTTTTC
chrX	141399371	141399661	141571705	141571995	+	5054	290	13	L1HS	"COLO1T,COLO1N"	8265	398	"MER5A1,(A)n"	LINE:dbRIP			cXp141399516FS	CAATAGATTTCAACCCTTCTCAAG	cXp141399516ES	TCATTCTCAGTAAACTATCGCAAG
chrX	143237582	143238005	143409896	143410319	+	701	423	8	L1HS	"COLO1T,COLO1N"	1646	541	"L2c,AT_rich,MER53"	LINE:dbRIP			cXp143237793FS	ATGTGTATATCGTCTACAGCGAAG	cXp143237793ES	TGGGAGATATACCTAATGCTAGATG
chrX	143856865	143857383	144049173	144049691	+	15	518	3	noL1	"COLO1T,COLO1N"	80	368	"L1PA3,AT_rich,L1MA4"				cXp143857124FS	TCTATCAAACTGTATTTTTGTGCC	cXp143857124ES	TACCCAAAGGACTATAAATCATGC
chrX	143996774	143996956	144189082	144189264	+	39	182	5	L1PA2	"COLO1T,COLO1N"	147	214	"L2a,L1PA2"				cXp143996865FS	GTCATTTATATAGCAAGTGCCAAG	cXp143996865ES	ACAGACTGGATTAAGAAAATGTGG
chrX	144056425	144056704	144248733	144249012	+	15	279	4	L1PA7	"COLO1T,COLO1N"	56	377	L2				cXp144056564FS	TCCCAAAAACTCTGACCTACTAAC	cXp144056564ES	TAAGCGGAATTTGAACAATAAGAG
chrX	144246271	144246659	144438579	144438967	-	26	388	7	L1PA3	"COLO1T,COLO1N"	149	714	"L1PA3,L1PA12"				cXp144246465FS	ATAAGTGAGAACATGTGGTGATTG	cXp144246465ES	ATGATGAGTTCATGTCCTTTGTAG
chrX	144865113	144865552	145057421	145057860	+	3490	439	16	L1HS	"COLO1T,COLO1N"	21887	488	"HERVIP10F-int,L1HS"				cXp144865332FS	TATTCAGCAGAGTGTCCAGTAAAG	cXp144865332ES	TCATTCTCAGTAAACTATCGCAAG
chrX	146548951	146549466	146741259	146741774	+	31322	515	54	L1HS	"COLO1T,COLO1N"	66087	480	"L1HS,(A)n"	LINE:dbRIP			cXp146549208FS	ATGTTTTTCTACCTCTGGACTCTG	cXp146549208ES	ACACCGCATATTCTCACTCATAG
chrX	147058826	147059319	147251134	147251627	-	755	493	8	L1HS	"COLO1T,COLO1N"	519	517	"L1HS,L1PA4"				cXp147059072FS	ATCCTCAATAAAATACTGGCAAAC	cXp147059072ES	TCATTCTCAGTAAACTATCGCAAG
chrX	147860828	147861032	148053134	148053343	-	71	204	7	L1HS	"COLO1T,COLO1N"	142	203	"L1HS,(T)n"		AFF2		cXp147860930FS	AGTATACATAGGCAGATAGGTGGC	cXp147860930ES	TCATTCTCAGTAAACTATCGCAAG
chrX	149095299	149095575	149344641	149344917	-	55	276	7	L1PA4	"COLO1T,COLO1N"	86	83	"L1PA4,L1MEc"		U66047		cXp149095437FS	TTACTTTGGGTTTAATTTGCTTTC	cXp149095437ES	AACTAGAAATACCATCTGACCCAG
chrX	149371243	149371495	149620585	149620837	-	15	252	5	L1PA2	"COLO1T,COLO1N"	61	337			MAMLD1		cXp149371369FS	ATATGGCACATAGTAAATGCTCAG	cXp149371369ES	TCATTCTCAGTAAACTATCGCAAG
chrX	150255474	150255575	150504816	150504917	+	18	101	2	L1HS	"COLO1T,COLO1N"	40	263	L1HS				cXp150255524FS	AAAACAAACAAACAAACCAAAAAC	cXp150255524ES	CAAATGTCCAACAATGATAGACTG
chrX	150585499	150585845	150834843	150835189	-	12	346	2	noL1	"COLO1T,COLO1N"	8	346	L1PA4		PASD1		cXp150585672FS	ACCTTGTTTATATGCATGGTATCC	cXp150585672ES	GCTAGAGAGGATGTGGAGAAATAG
chrX	151279794	151280370	151529138	151529714	+	19872	576	45	L1HS	"COLO1T,COLO1N"	61757	506	"L1HS,(A)n,AluJr4"		GABRA3		cXp151280082FS	TTTTTAGTAGAGATGGGGTTTCAC	cXp151280082ES	TAATGCTAGATGACACGTTAGTGG
chrX	153409556	153410610	153756362	153757416	+	46	1054	4	noL1	"COLO1T,COLO1N"	119	1054	"AluSg,AluSx,AluSc"				cXp153410083FS	TTTTTGAGATGGAGTTTTGCTC	cXp153410083ES	AATACAAAAATTAGCTGTGTGTGC
chrX	154398646	154398929	154745452	154745735	-	14366	283	42	L1HS	"COLO1T,COLO1N"	25348	292	"L1HS,MER58C,MER58A"		TMLHE		cXp154398787FS	CTACTTATCTTCATTCCCTCCAAC	cXp154398787ES	CAAATGTCCAACAATGATAGACTG
chrX	154434069	154434466	154780875	154781272	-	45	397	6	L1PA4	"COLO1T,COLO1N"	72	75	"L1MEf,L1P2,L1PA4"		TMLHE		cXp154434267FS	AGTAAATAAAGCGCATCAACTCTC	cXp154434267ES	ATAAAGGCAGACTCACAGATAACC
chrX	154583251	154583556	154930057	154930362	-	130	305	21	L1HS	"COLO1T,COLO1N"	549	149	"L1HS,L1MB5"				cXp154583403FS	ACAAAAGGCTTGAATAAACATTTC	cXp154583403ES	GATGAGTTCATATCCTTTGTAGGG
chrY	3377556	3377690	3317556	3317690	+	53703	134	38	L1HS	"COLO1T,COLO1N"	188568	254	"L1HS,(A)n"				cYp3377623FS	AGATGTTTGGGTCAAAGTAAAGAG	cYp3377623ES	CGTATGTTTATTGTGGCACTATTC
chrY	5068723	5069170	5008723	5009170	-	3484	447	7	L1HS	"COLO1T,COLO1N"	21810	442	L1HS		PCDH11Y		cYp5068946FS	GGAAGAATATGTTTATTTTGCACC	cYp5068946ES	AACTAGAAATACCATTTGACCCAG
chrY	7234177	7234496	7174177	7174496	-	65	319	3	L1PA4	"COLO1T,COLO1N"	93	399	"L1PA4,AluSz"		PRKY		cYp7234336FS	TAGGATAGAATTCTTGAGCTCCC	cYp7234336ES	TCATTCTCAGCAAACTATCTCAAG
chrY	8469384	8469609	8409384	8409609	+	125	225	9	L1PA2	"COLO1T,COLO1N"	1116	445	"HERVE_a-int,L1PA2"				cYp8469496FS	AGATACATGTTAACTCCACACTGG	cYp8469496ES	TATGTTTATTGCAGCGTTATTCAC
chrY	10039422	10039935	9429422	9429935	+	31	513	12	L1HS	"COLO1T,COLO1N"	171	513	"L1HS,L1PA3"				cYp10039678FS	ATTTCATCTTCTATCGCTGATACC	cYp10039678ES	TCATTCTCAGTAAACTATCGCAAG
chrY	10669471	10669669	10059471	10059669	+	14	198	3	L1PA2	"COLO1T,COLO1N"	27	342	ALR/Alpha				cYp10669570FS	TTGAGGTCTATGGTTAAAGGAAAC	cYp10669570ES	TCATTCTCAGTAAACTATCGCAAG
chrY	12388677	12388839	13878677	13878839	+	35	162	4	L1HS	"COLO1T,COLO1N"	109	310		LINE:Ewing			cYp12388758FS	GTTATAGGGCAACATCATCTATCC	cYp12388758ES	TTGGAAACCATCATTCTTAGTAAAC
chrY	12569009	12569214	14059009	14059214	+	56	205	3	L1PA4	"COLO1T,COLO1N"	111	205	"MER1A,L1MB5,L1PA4"				cYp12569111FS	ACTCACCATCATGTAGAATCAGTG	cYp12569111ES	TAGACTGGATTAAGAAAATGTGGC
chrY	12901343	12902200	14391336	14392193	+	24	857	5	noL1	"COLO1T,COLO1N"	274	555	"GA-rich,L1PA3"				cYp12901771FS	GAATGTAATGTTTTGTTGTTGGTG	cYp12901771ES	ATTAGCCCTTTGTCAGATGAGTAG
chrY	14317619	14318378	15808225	15808984	+	160	759	3	noL1	"COLO1T,COLO1N"	25	65	L1PA3				cYp14317998FS	TAGGTATATCTCCCAATGCTATCC	cYp14317998ES	GTAAATTTTCGCAACCTACTCATC
chrY	14374943	14375426	15865549	15866032	-	20	483	4	noL1	"COLO1T,COLO1N"	42	480	"AluSx1,(T)n"				cYp14375184FS	ACTCTGCACTCCTCCTGAGTC	cYp14375184ES	GTAGCTAGAATTATAGGTGCCTGC
chrY	14472443	14472554	15963049	15963160	-	10	111	3	noL1	"COLO1T,COLO1N"	5	154	L1PA3				cYp14472498FS	CTTCTGCATTCTTCACGTAGTTC	cYp14472498ES	CTCTGTAGGTTCCACCTCTGG
chrY	14717358	14717630	16207964	16208236	-	31	272	2	noL1	"COLO1T,COLO1N"	107	290	L1PA3				cYp14717494FS	TCATGATATTGATTCTTCCTACCC	cYp14717494ES	AAATATCCTCAATAAAACACTGGC
chrY	15786251	15786550	17276857	17277156	+	112	299	5	L1PA3	"COLO1T,COLO1N"	406	590	"THE1C,L1PA3"				cYp15786400FS	GTGTGTGTGTGTGTGATATACAGG	cYp15786400ES	GATGAGTTCATGTCCTTTGTAGTG
chrY	16293491	16293718	17784097	17784324	-	152	227	5	L1PA3	"COLO1T,COLO1N"	283	517	"L1P3,L1PA3"				cYp16293604FS	TTTGTACCTCTGGTAGAATTAGGC	cYp16293604ES	ATGGAATACTATGCAGCCATAAAC
chrY	17479696	17479813	18970302	18970419	+	52	117	3	L1PA3	"COLO1T,COLO1N"	11	114	"L1PA3,AluYb8"				cYp17479754FS	ATTTCTGAGACCTCTGTTCTGTTC	cYp17479754ES	GTAAATCTGGAAAACCTCATTGTC
chrY	17996025	17996387	19486631	19486993	-	3383	362	30	L1HS	"COLO1T,COLO1N"	7628	488	"L1HS,AluJo,(T)n"				cYp17996206FS	TCTACTTTTCCCATCTTTATGTCC	cYp17996206ES	GATGAGTTCATATCCTTTGTAGGG
chrY	20033811	20034267	21574423	21574879	-	11	456	4	L1PA12	"COLO1T,COLO1N"	62	593	"L1PA3,(TTA)n,HERVH-int"				cYp20034039FS	AATTTTCCTTTACCTACCCAAATC	cYp20034039ES	TCAGGGAACTAGAACTGGAAATAC
chrY	20298916	20299398	21839528	21840010	-	1257	482	23	L1HS	"COLO1T,COLO1N"	4633	1080	"L1HS,(T)n"				cYp20299157FS	CTATATTTAGCCATTTGACACACG	cYp20299157ES	TCATTCTCAGTAAACTATCGCAAG
chrY	21176892	21177755	22767504	22768367	+	52	863	3	L1PA14	"COLO1T,COLO1N"	59	919	L1PA6				cYp21177323FS	CTTTAAGAACTGCAACAAGACAAG	cYp21177323ES	TCTCAAAAGAAGACATTTATGCAG
chrY	21261110	21261660	22851722	22852272	-	909	550	16	L1HS	"COLO1T,COLO1N"	3785	450	"L1HS,L1PA6"				cYp21261385FS	TGTGTCCAAGTATTCTCATTGTTC	cYp21261385ES	TCATTCTCAGTAAACTATCGCAAG
chrY	21529685	21530013	23120297	23120625	-	10398	328	26	L1HS	"COLO1T,COLO1N"	42180	328	"L1HS,MER41A"				cYp21529849FS	TTTTAGTAGAGATGGGATTTCACG	cYp21529849ES	TCATTCTCAGTAAACTATCGCAAG
chrY	21602589	21603062	23193201	23193674	+	11	473	3	L1PA2	COLO1T	0	0	"L1PA2,L1P3b"				cYp21602825FS	TAATCCACAAAGAGAAAGGAAGAG	cYp21602825ES	TCATTCTCAGTAAACTATCGCAAG
chr1	14402763	14402951	14530176	14530364	+	28	188	3	noL1	COLO1N	0	0					c1p14402857FS	GGAGAAAGAATAATCGTGAAGAAG	c1p14402857ES	ACTGAAGGCTACACTACATTACCC
chr1	31795597	31796182	32023010	32023595	-	16	585	3	noL1	COLO1N	0	0	"L1MEg,AluY,AluYb8"		TINAGL1		c1p31795889FS	TGCTTTCATCTGAGATCATTTTAC	c1p31795889ES	GAAACCCCGTCTCTACTAAAAATAC
chr1	36083294	36083442	36310707	36310855	-	33	148	3	noL1	COLO1N	0	0	AluSq		EIF2C4		c1p36083368FS	CACTGCTACCTTATCTTTTCTTCC	c1p36083368ES	AAGTGGATGACACTATAGAGAGGG
chr1	40774622	40774832	41002035	41002245	+	2218	210	2	L1PA3	COLO1N	0	0	"L1PA3,AluY"		ZNF684		c1p40774727FS	CAAATGTCCAACAATGATAGACTG	c1p40774727ES	ACTACTTGTCTTTAATTTCGGTGC
chr1	45149094	45149994	45376507	45377407	-	18	900	3	L1PA3	COLO1N	0	0	"L1PB1,L1PA3"		EIF2B3		c1p45149544FS	ATTCTGTCATTGTCCTTTTCTCTC	c1p45149544ES	AACCTCTGTGGGAACTAGTTTATG
chr1	75561026	75561263	75788438	75788675	-	44	237	4	L1PA3	COLO1N	0	0	"L1PA3,MIR3"		SLC44A5		c1p75561144FS	TAGGAGACATTCTTAGGACTCCAG	c1p75561144ES	CAAATGTCCAACAATGATAGACTG
chr1	75921758	75922157	76149170	76149569	+	12	399	4	L1PA3	COLO1N	0	0	"L1PA3,L1M1"		CR936677		c1p75921957FS	ATGGTTTTATAAATGAGTGTTCCC	c1p75921957ES	GCTGCTATAAAGACACATGCATAC
chr1	83426408	83426609	83653820	83654021	+	214	201	4	L1PA2	COLO1N	0	0	L1PA2				c1p83426508FS	TACTTTGCTGTTCTAAGGTCTTCC	c1p83426508ES	TCATTCTCAGTAAACTATCGCAAG
chr1	86418407	86418859	86645819	86646271	-	18	452	5	L1PA4	COLO1N	0	0	"L1MB3,L1PA4"				c1p86418633FS	CACAGGTGTACCAATATCTCTTTG	c1p86418633ES	ATGCTGCTATAAAGATACATGCAC
chr1	90302349	90303067	90529761	90530479	-	15	718	5	L1PA7	COLO1N	0	0	"(TTC)n,(TG)n,L1PA7"				c1p90302708FS	AAACCACTCAGTTGTAATAAAGCC	c1p90302708ES	TAAAACTAAAACGCCAGTTATTCC
chr1	102304507	102304941	102531919	102532353	+	29	434	3	L1PA4	COLO1N	0	0	"L1PB3,L1PA4"				c1p102304724FS	CATATCATTTGCAAAGAGCAATAG	c1p102304724ES	TCATTCTCAGCAAACTATCACAAG
chr1	106074272	106074449	106272749	106272926	+	34	177	2	L1PA2	COLO1N	0	0	L1PA2				c1p106074360FS	CATGCAACTGTTTTTCTAAATCTG	c1p106074360ES	TCATTCTCAGTAAACTATCGCAAG
chr1	107615081	107615408	107813558	107813885	-	32	327	5	L1PA3	COLO1N	0	0	L1PA3		NTNG1		c1p107615244FS	GTCATGGTCTGACATATTTCTTTG	c1p107615244ES	CTATTTTGGATTCTTATTCTTCGC
chr1	115969681	115969939	116168158	116168416	-	14	258	3	L1PA2	COLO1N	0	0	L1PA2				c1p115969810FS	CACTAGAGAAGAAACTTCTGGGTC	c1p115969810ES	TCATTCTCAGTAAACTATCGCAAG
chr1	118922235	118922365	119120712	119120842	+	27	130	2	L1PA2	COLO1N	0	0	"L1M3c,L1PA2"				c1p118922300FS	AGTCTTATTGTTTGTTTGGGAAAG	c1p118922300ES	CGTATGTTTATTGTGGCATTATTC
chr1	119260446	119260799	119458923	119459276	+	13	353	2	noL1	COLO1N	0	0	"L1PA10,L2c,AluSx3"		TBX15		c1p119260622FS	AAAAGCATTCCTATTTCTTCACAG	c1p119260622ES	TTGTGCCACTTATCATTTATCATC
chr1	119355041	119355206	119553518	119553683	+	24	165	2	noL1	COLO1N	0	0		"LINE:Ewing,Iskow,Stewart"			c1p119355123FS	TACTATTCTGCTCTGGATACTCCC	c1p119355123ES	AGAGAGAATCAGGAAAGAGACAAC
chr1	119882055	119882190	120080532	120080667	+	19	135	2	noL1	COLO1N	0	0					c1p119882122FS	TGGTTATATACTCACACAGATCCC	c1p119882122ES	TTGCAGGCAAAAATATAAGATAAG
chr1	145346969	145347120	146880345	146880496	+	15	151	3	L1PA4	COLO1N	0	0	MSTB		"KIAA1693,NBPF1,BC036212"	BC036212.2	c1p145347044FS	TTTAGAAATAGATTCCCAAGCAAC	c1p145347044ES	TCATTCTCAGCAAACTATCACAAG
chr1	152141174	152141415	153874550	153874791	+	27	241	2	noL1	COLO1N	0	0	AluSp		GATAD2B		c1p152141294FS	ATAAGAAAACTTAGCAGGGTATGG	c1p152141294ES	TACCTGTAATCCCAGCTATTTGAG
chr1	155785817	155785943	157519193	157519319	+	12	126	2	L1PA4	COLO1N	0	0	L1PA4		FCRL5		c1p155785880FS	CACACATATATCCTACACACTGGG	c1p155785880ES	ATGATAGACTGGATCAAGGAAATG
chr1	164014858	164015581	165748234	165748957	+	10	723	2	noL1	COLO1N	0	0	L1PA4		UNQ151		c1p164015219FS	CAACTTACAAGTGATGTGAAGGAC	c1p164015219ES	TAGATTCTGGATATTAGCCCTTTG
chr1	164677444	164677549	166410820	166410925	-	11	105	2	noL1	COLO1N	0	0	L1MA3				c1p164677496FS	TTCAATCTTGTTGGGTTGTATATG	c1p164677496ES	CAAACACATGGAAATTAAACAATG
chr1	168343153	168343297	170076529	170076673	+	11	144	3	L1PA3	COLO1N	0	0	"L2c,L1PA3"				c1p168343225FS	GATAACTGGGTTAAGAAAATGTGG	c1p168343225ES	GTAACTTGATATTTCCAATTGCTG
chr1	175636367	175636724	177369744	177370101	-	25	357	5	L1PA3	COLO1N	0	0	"L1PA3,AluSg"				c1p175636545FS	ACCAGCTCTCTCATGAACTCTTAC	c1p175636545ES	TCATTCTCAGTAAACTATCGCAAG
chr1	179460910	179461176	181194287	181194553	-	20	266	3	L1PA2	COLO1N	0	0	"L1PA2,MER5A"				c1p179461043FS	GTCAACTACTATTAACCAGGGGAC	c1p179461043ES	TCATTCTCAGTAAACTATCGCAAG
chr1	190742311	190742620	192475688	192475997	+	13	309	4	L1PA2	COLO1N	0	0	"L1PA2,AT_rich"				c1p190742465FS	ATTTATAGTACAGCTGGGAAATGG	c1p190742465ES	TCATTCTCAGTAAACTATCGCAAG
chr1	216470883	216471150	218404260	218404527	-	37	267	2	noL1	COLO1N	0	0	"AluY,(T)n,X7C_LINE"				c1p216471016FS	ATTTTATGCCTTCAAGTAGGACTG	c1p216471016ES	AAACCTGAACATTTTTATCAAAGC
chr1	217037832	217038278	218971209	218971655	-	11	446	2	L1PA15	COLO1N	0	0	"L1PA15,AluSz"				c1p217038055FS	CATCTTCATAGGCTTAGTTCCATC	c1p217038055ES	ACATGGTGAAATCTTGTCTCTACC
chr1	218301903	218302391	220235280	220235768	-	25	488	2	L1PA3	COLO1N	0	0	"L1PA3,AT_rich"		"PIP,BPNT1"		c1p218302147FS	ATATCTAGGGGACAATCAGATGAG	c1p218302147ES	CGTATGTTTATTGTGGCACTATTC
chr10	4515854	4516425	4525854	4526425	-	11	571	2	noL1	COLO1N	0	0	(TG)n				c10p4516139FS	CAGATATTTGTGTTTGTGTGTGTG	c10p4516139ES	GTTGAATGAATAAGTGGAGGAATC
chr10	10772612	10772959	10732606	10732953	-	11	347	3	L1PA3	COLO1N	0	0	"MIR,AluSz"				c10p10772785FS	GTGAGTGCCAAAATAAAAGTACAG	c10p10772785ES	TCATTCTCAGTAAACTATCGCAAG
chr10	19068149	19068494	19028143	19028488	-	14	345	2	noL1	COLO1N	0	0	L1MD				c10p19068321FS	ATGACATAAAAATGTAGGGGTGAC	c10p19068321ES	AGGAATATGAAATACACATCCACC
chr10	35089688	35089845	35049682	35049839	-	40	157	2	noL1	COLO1N	0	0	MLT1F1		PARD3		c10p35089766FS	GTAGGATCTCTGCTCACTGTAACC	c10p35089766ES	TTTTTAGTAGAGATGGAAGTTCACC
chr10	37396441	37396630	37356435	37356624	+	15	189	2	L1PA2	COLO1N	0	0	L1PA2				c10p37396535FS	GCCAAGAGACTATGGAAACACTAC	c10p37396535ES	AAAAACTAAACACCGCATATTCTC
chr10	41742710	41742875	42422704	42422869	+	13	165	2	L1PA3	COLO1N	0	0	"L1PA3,ALR/Alpha"				c10p41742792FS	ATGAATACACACATCACAAGGAAG	c10p41742792ES	ATGATTCACAATAGCAAAGACTTG
chr10	66049557	66049864	66379551	66379858	+	12	307	2	noL1	COLO1N	0	0	L1MDa				c10p66049710FS	AAGCAGGTTGTACAGAAGAGAAAG	c10p66049710ES	ATTACATGTGGAAAGACTTGTGTG
chr10	69071778	69072001	69401772	69401995	+	14	223	2	L1PA4	COLO1N	0	0	"L1PA11,L1PA4"		CTNNA3		c10p69071889FS	CATACCCGGTTAATTTTTGTATTC	c10p69071889ES	ATGATGAGTTCATGTCCTTTGTAG
chr10	69171058	69171531	69501052	69501525	+	16	473	5	L1PA3	COLO1N	0	0	"L1PA3,L1PA4"				c10p69171294FS	TGATCTTTGTTGGTTTAAAGTCTG	c10p69171294ES	TCATTCTCAGTAAACTATCGCAAG
chr10	74421286	74421673	74751280	74751667	+	93	387	4	noL1	COLO1N	0	0	L1PA6				c10p74421479FS	CTGGATATCCTTGTTAACCTTCTG	c10p74421479ES	AAGGTTGAAATGAAAGAAAAAGTG
chr10	86497190	86497291	86507210	86507311	+	11	101	2	noL1	COLO1N	0	0	L1PA3				c10p86497240FS	TTGAATCTATAAATTACCTTGGGC	c10p86497240ES	AATAAAATACTGGCAAAACGAATC
chr10	87167408	87167916	87177428	87177936	+	10	508	3	L1PA4	COLO1N	0	0	L1PA4				c10p87167662FS	CAACAAGAGATGTGATTACTCCAG	c10p87167662ES	AACTAGAAATACCATTTGACCCAG
chr10	90728198	90728363	90738218	90738383	+	11	165	2	L1PA2	COLO1N	0	0			ACTA2		c10p90728280FS	TATGCTTATTAGGAGGATGAAAGG	c10p90728280ES	TCATTCTCAGTAAACTATCGCAAG
chr10	91664371	91664535	91674391	91674555	-	16	164	2	noL1	COLO1N	0	0	MLT1F1				c10p91664453FS	AGACACTACTCCAAGAGGTCACTC	c10p91664453ES	CCAGCTATTTATCAAAGTGTTTCC
chr10	111163916	111164148	111173926	111174158	-	60	232	2	L1PA3	COLO1N	0	0	"L1PA3,L1MC4"				c10p111164032FS	CACATTTTCTTTATGCTTCAAATG	c10p111164032ES	TCATTCTCAGTAAACTATCGCAAG
chr10	111869537	111869707	111879547	111879717	-	15	170	2	L1PA2	COLO1N	0	0			ADD3		c10p111869622FS	TATTTTTAATGTGCAACTAGCCTG	c10p111869622ES	TGGAAATCATCATTCTCAGTAAAC
chr10	113546061	113546219	113556071	113556229	-	508	158	2	L1PA3	COLO1N	0	0	"L1PA3,AT_rich,(T)n"				c10p113546140FS	GATTTAAAGACAAAGGGAAGGAAG	c10p113546140ES	TAGACTGGATTAAGAAAATGTGGC
chr10	122666488	122666828	122676498	122676838	+	13	340	6	L1PA3	COLO1N	0	0	MLT1A				c10p122666658FS	GCTGTCCTGAAGTAATTCTCAGTC	c10p122666658ES	TCATTCTCAGTAAACTATCGCAAG
chr10	134485054	134485714	134635064	134635724	+	42	660	3	noL1	COLO1N	0	0	(TG)n		C10orf92		c10p134485384FS	no primer	c10p134485384ES	no primer
chr11	5196713	5196894	5240137	5240318	-	12	181	2	noL1	COLO1N	0	0	L1PA4				c11p5196803FS	ATTGGAATAGTTTCAGAAGGAATG	c11p5196803ES	ACCACATAGTTGGAAGTAAAGCTC
chr11	18465121	18465417	18508545	18508841	+	72	296	3	L1PA4	COLO1N	0	0	L1PA4		TSG101		c11p18465269FS	TGAGCAACATAGTGAGACTACCTC	c11p18465269ES	AACTAGAAATACCATTTGACCCAG
chr11	28861773	28862028	28905197	28905452	+	10	255	2	noL1	COLO1N	0	0	L1PA6				c11p28861900FS	AATCTGTAAATTACCTTGGACAGG	c11p28861900ES	ATCCTCAGTAAAATACTGGCAAAC
chr11	29246039	29246525	29289463	29289949	+	11	486	2	L1PA3	COLO1N	0	0	(TG)n				c11p29246282FS	GGAGTTGAGAAAGAGAATGGTAAG	c11p29246282ES	ATACTAACCTTGCTGGATTCTGTC
chr11	30177038	30177247	30220462	30220671	-	23	209	3	L1PA2	COLO1N	0	0	MLT1D				c11p30177142FS	ATAAATTCTGGCAGGACATTACTC	c11p30177142ES	CTTACTCATAGGTGGGAATTGAAC
chr11	30716277	30716417	30759701	30759841	-	12	140	2	L1PA2	COLO1N	0	0	"L1PA2,MIR"				c11p30716347FS	TGTGAAATAATCCTTTGTTGTTTG	c11p30716347ES	AGTATTCCAAGGTGTATATGTGCC
chr11	31555110	31555235	31598534	31598659	+	13	125	2	noL1	COLO1N	0	0	L1PA5		"ELP4,DKFZp564P2272"		c11p31555172FS	GTTAGGGAGAATTTCCTCTTTTTC	c11p31555172ES	CAAACTGTCTCTCAGACCATAGTG
chr11	32855062	32856013	32898486	32899437	-	31	951	3	noL1	COLO1N	0	0	"AluSp,AluSg7,FLAM_C,L1M5"				c11p32855537FS	TAAATGACACAAATATGGCTGTTG	c11p32855537ES	TCTTGGTGCTACAATTTTTATCTG
chr11	48502031	48502511	48545455	48545935	-	30	480	6	L1PA4	COLO1N	0	0	L1PA4				c11p48502271FS	CATTTAGCTCTCTGTCTGATGATG	c11p48502271ES	ACTATATGATTTTGGGCCACTTAC
chr11	50669376	50669530	50712800	50712954	-	10	154	2	noL1	COLO1N	0	0	ALR/Alpha				c11p50669453FS	AAGTGAAGATATTTCCTTTTCAGC	c11p50669453ES	ATTCTGAGAAACTACTTTGGGATG
chr11	54734548	54734803	54977972	54978227	+	10	255	2	L1PA4	COLO1N	0	0	"ALR/Alpha,L1PA4"				c11p54734675FS	ATTTGAAGCTTTCTTTTGATTCAG	c11p54734675ES	AACAAAGCATGTTCTCACTCATAG
chr11	55952332	55952460	56195756	56195884	+	14	128	3	L1PA5	COLO1N	0	0	L1PA5		OR8U8		c11p55952396FS	GTTGTTGATGTTGTGAGTTGTCTC	c11p55952396ES	TATTGGAGATCAGGTAAGGAGAAG
chr11	65371046	65371671	65614470	65615095	-	414	625	2	noL1	COLO1N	0	0	"AluJb,AluJr4,L1ME3"		SNX32		c11p65371358FS	CTAAAAATACAAAATTAGCTGGGC	c11p65371358ES	ATTTTTAGTAGACACGGGGTTTTG
chr11	80594475	80595060	80916827	80917412	+	12	585	3	noL1	COLO1N	0	0	"MIR,(TG)n,AluSx"				c11p80594767FS	GGAAGAAACAGATGAAAAGGTATG	c11p80594767ES	ATCTAGCGAACCCTAATACACATC
chr11	85925982	85926276	86248334	86248628	+	144	294	3	L1PA2	COLO1N	0	0	"L1PA2,MIR3,AT_rich"		ME3		c11p85926129FS	AGTAGGTGTCAGGATGTTTAATGG	c11p85926129ES	ATGATGAGTTCATGTCCTTTGTAG
chr11	87834633	87834987	88194985	88195339	-	65	354	3	noL1	COLO1N	0	0	L1PA4				c11p87834810FS	AGGTCTCTAAGGACTTGCTTTATG	c11p87834810ES	GAACAACTCCAAGACACATAATTG
chr11	92791956	92792244	93152308	93152596	+	15	288	4	L1PA3	COLO1N	0	0	"L1PA3,LTR47B"		CCDC67		c11p92792100FS	CCAACTGTTGACATAAACACAAAC	c11p92792100ES	TCATTCTCAGTAAACTATCGCAAG
chr11	98990582	98990774	99485372	99485564	-	20	192	2	noL1	COLO1N	0	0			CNTN5		c11p98990678FS	CCGAATCAAGTCATAATAACAGTG	c11p98990678ES	TGCATGAAACAAGAACAAATATAAG
chr11	109815530	109815970	110310320	110310760	-	10	440	2	L1PA16	COLO1N	0	0	L1P4		FDX1		c11p109815750FS	ATTTTTAGTAGAGATGGGGTTTCC	c11p109815750ES	AAACAAAATGGATAGACCACTAGC
chr11	124986957	124987088	125481747	125481878	-	16	131	2	noL1	COLO1N	0	0	AluSp		STT3A		c11p124987022FS	TTCAGAAAGTACTGATGATTGTGC	c11p124987022ES	TATGCATGTGTGTCTTGAATAATG
chr11	128409785	128409980	128904575	128904770	+	13	195	3	noL1	COLO1N	0	0	"L1MB8,AluYg6"		"DKFZp451F1115,RICS"		c11p128409882FS	CCATATCCTGACCAAGATAGAAAG	c11p128409882ES	TTTATTTCCAGAAGTTAATGCCTC
chr12	9894443	9894571	10003176	10003304	-	13	128	2	L1PA2	COLO1N	0	0	"L1PA2,MER67C"				c12p9894507FS	CCTTGAGGTTACATTCTAAACAGG	c12p9894507ES	ACTCCTCAAACATTCTGGCATAC
chr12	10876238	10876527	10984971	10985260	+	18	289	3	L1PA2	COLO1N	0	0	"(TAAAAA)n,L1PA2"				c12p10876382FS	AGTGCTAGAATCTTGTTTTTGAGG	c12p10876382ES	TTTATCATGGCTTTTCTTTTTAGC
chr12	11364541	11364960	11473274	11473693	+	19	419	4	L1PA4	COLO1N	0	0	"L1PA4,MIRb"				c12p11364750FS	ATTTAAACAAAACTGTGGAATTGG	c12p11364750ES	CATAGGTGAGAACTGAACAATGAG
chr12	18755394	18755869	18864127	18864602	+	11	475	3	L1PA4	COLO1N	0	0	"L2a,(TAA)n,L1PA4"		PLCZ1		c12p18755631FS	AGTATGGCACTGATTCTCCTAAAC	c12p18755631ES	AACTAGAAATACCATTTGACCCAG
chr12	25452024	25452342	25560757	25561075	+	13	318	5	noL1	COLO1N	0	0	"L1MD1,AluY"				c12p25452183FS	GCTTTTGGTGTCAAGTCTAAGAAC	c12p25452183ES	GAAGAGGCAAATACATAAGAATGG
chr12	25814301	25814682	25923034	25923415	+	15	381	5	L1PA5	COLO1N	0	0	L1PA5				c12p25814491FS	AGTACCTAATCATTCCTCTTGCAG	c12p25814491ES	GTAAATTAGACACCCACTTTGAGG
chr12	41577917	41578267	43291650	43292000	-	20	350	2	noL1	COLO1N	0	0	L1PA5				c12p41578092FS	TTTATTCTCTTTGAAGCAATTGTG	c12p41578092ES	TACCATTCCTTCTGAAACTATTCC
chr12	43780341	43780725	45494074	45494458	+	15	384	2	noL1	COLO1N	0	0	L2c				c12p43780533FS	CATCATATGACAAAGCAACATAGG	c12p43780533ES	GAGAAAGCTATCAATCATTTGGAG
chr12	45683317	45683744	47397050	47397477	-	12	427	3	noL1	COLO1N	0	0	"L2a,AluYa5,AluY"				c12p45683530FS	GAAACCCCGTCTCTACTAAAAATAC	c12p45683530ES	AGTACCTTAGAAACCACTTTCTGG
chr12	54741647	54741790	56455380	56455523	-	41	143	3	noL1	COLO1N	0	0					c12p54741718FS	GACTAAGTCTCACTCTTGTCCCC	c12p54741718ES	TATAATCCTAGTACATTGGGAGGC
chr12	56332697	56332808	58046430	58046541	+	10	111	2	L1PA2	COLO1N	0	0	MER4-int				c12p56332752FS	GGTAAAACCTTCATTCTTTGAGAG	c12p56332752ES	TCATTCTCAGTAAACTATCGCAAG
chr12	67078445	67078570	68792178	68792303	-	10	125	2	L1PA4	COLO1N	0	0	"MLT1F2,L1PA4"				c12p67078507FS	AGAATTCTGTTCAAATGTCCTCTC	c12p67078507ES	CTGCTTGATTCTGTTTGTTAAATG
chr12	71811337	71811502	73525070	73525235	+	303	165	6	L1PA15	COLO1N	0	0	"GA-rich,AluJb,L1PA15"				c12p71811419FS	TTTACTTTCATTTTAGGTTCAGGG	c12p71811419ES	CTATTCACAATAGCAAAGACATGG
chr12	73892530	73892845	75606263	75606578	+	11	315	2	L1PA2	COLO1N	0	0	L1PA2				c12p73892687FS	GAGAGAGAGCAAGAATGTAGAAGC	c12p73892687ES	AGCAAGGATTTAGAAAACTGTACG
chr12	81309814	81310042	82785683	82785911	-	10	228	5	L1PA3	COLO1N	0	0	"L1M2,L1PA3,(TTTA)n"		C12orf26		c12p81309928FS	ATTGATGGACACTTAGGTTGTTTC	c12p81309928ES	TAATCTGATTTAAAAATGGGCAAC
chr12	81691749	81692453	83167618	83168322	-	17	704	2	noL1	COLO1N	0	0	"AluSx,MLT1J,(TATATG)n"		TMTC2		c12p81692101FS	CTAGCCACTGATACTTCTTTAGCC	c12p81692101ES	TTTTTGAGACAGTCTTACCCTTTC
chr12	87856630	87856776	89332499	89332645	-	10	146	5	L1PA3	COLO1N	0	0	"L1PA3,(TTA)n"				c12p87856703FS	AGTTAAACACACACACACACACAC	c12p87856703ES	GCATTATTCACAATAGCAGACTTG
chr12	89033527	89034088	90509396	90509957	-	54	561	2	noL1	COLO1N	0	0	L1MA4A				c12p89033807FS	GGACATGTGATATTTGTCTTTCTG	c12p89033807ES	AAATATTTAAAAAGCACAAGCCAC
chr12	95239821	95240144	96715690	96716013	+	11	323	3	L1PA2	COLO1N	0	0	"MER63C,L1PA2,MER63D"		PCTK2		c12p95239982FS	TACAGTCTCCATTGCATATTCTTC	c12p95239982ES	TTGATGAGTTCATGTCCTTTGTAG
chr12	97135087	97135624	98610956	98611493	-	16	537	3	noL1	COLO1N	0	0	"AluJb,AluSg,MIRb,(TA)n"				c12p97135355FS	ATGTGGTAAAACCCCATCTCTAC	c12p97135355ES	AAAAATACAAAAATTAGCCAGGTG
chr12	130574134	130574533	132008181	132008580	+	25	399	3	L1PA11	COLO1N	0	0	"L1MCa,MLT1A0"				c12p130574333FS	CTATTTGTCTTAGTTTCTTTGGGC	c12p130574333ES	CTTAATATCCAGATGATGGGATG
chr12	132209373	132209519	133699300	133699446	+	25	146	2	L1PA10	COLO1N	0	0	L1PA10				c12p132209446FS	AAATGAGTTTCCCTAAAGTGACAG	c12p132209446ES	TGTAAACTAAAGAGAACCAACCAG
chr13	33095015	33095584	34197015	34197584	+	14	569	2	noL1	COLO1N	0	0	"AluSc8,AluSc5,L1ME2"		STARD13		c13p33095299FS	CCTGACAAAGGTTTTGTATGTATG	c13p33095299ES	ACATGGTAAAACCCCATCTCTAC
chr13	35235028	35235441	36337028	36337441	-	12	413	2	noL1	COLO1N	0	0	(CA)n				c13p35235234FS	no primer	c13p35235234ES	no primer
chr13	42605113	42605369	43707113	43707369	-	16	256	2	noL1	COLO1N	0	0	MamSINE1				c13p42605241FS	ATTACTTAATTGACAAAGGGCTTG	c13p42605241ES	CTAGTAAATGAATAATGGATGCCC
chr13	44833489	44834196	45935489	45936196	-	16	707	2	noL1	COLO1N	0	0	"C-rich,L2a,AluSp,AluY"		pp13759		c13p44833842FS	TTGAAGGTAGAGACCCTAAGTCAG	c13p44833842ES	ACTCTAGAGCACTTGGAAGAAATC
chr13	53719688	53719859	54821687	54821858	+	23	171	2	noL1	COLO1N	0	0					c13p53719773FS	TGTCCCTACAAAGGATATGAACTC	c13p53719773ES	ATTTAATAAAATGGAGCAGTGGAG
chr13	56050325	56050694	57152324	57152693	+	36	369	6	L1PA3	COLO1N	0	0	"L1PA3,AT_rich,AluSx1"				c13p56050509FS	TTTTTCTTGAGATGGAGTCTCG	c13p56050509ES	ACACTGCATATTCTCACTCATAGG
chr13	56827714	56827816	57929713	57929815	-	15	102	2	L1PA3	COLO1N	0	0	L1PA3				c13p56827765FS	ATATTGTAGATTCACATGCAATGG	c13p56827765ES	CAAATGTCCAACAATGATAGACTG
chr13	69258726	69259459	70360725	70361458	+	11	733	3	noL1	COLO1N	0	0	L1PA4		KLHL1		c13p69259092FS	TTGTTTTTGTCAGGTTTATTGAAG	c13p69259092ES	ATAAGGGCTATCTATGACAAACCC
chr13	71425662	71425824	72527661	72527823	+	23	162	2	L1PA3	COLO1N	0	0	L1PA3				c13p71425743FS	TTACCCCTAAGGTTTCTGTAAGTG	c13p71425743ES	ACTATGCAGCTATGAAAAATGATG
chr13	72916332	72916679	74018331	74018678	+	11	347	2	noL1	COLO1N	0	0	MER61-int				c13p72916505FS	ATTTGAAAAGGGTACAGACTGAAG	c13p72916505ES	CTACAGCTCAGAAAGAACAAAAGG
chr13	75916223	75916746	77018222	77018745	+	29	523	5	L1PA2	COLO1N	0	0	"L1PA2,L1P4"				c13p75916484FS	TGACTTTTTAATAATAGCCTTGCC	c13p75916484ES	ATTATTCCCAATAGCAAAGACTTG
chr13	76417706	76417870	77519705	77519869	+	14	164	2	noL1	COLO1N	0	0	"PABL_A,FLAM_C"				c13p76417788FS	AGCATGACAAAATAATGAAGGAAG	c13p76417788ES	CAATAGATTCTCCTGACACATTTC
chr13	81803699	81803845	82905698	82905844	-	16	146	6	L1PA3	COLO1N	0	0	"L1PA3,LTR9"				c13p81803772FS	TTCAAAATCATTTCTTTTCTAGCC	c13p81803772ES	TACTATTTGGAAACCAGTGTGATG
chr13	93354730	93355045	94556729	94557044	-	16	315	4	L1PA3	COLO1N	0	0	"AluJb,L1PA3"		GPC6		c13p93354887FS	TCTCATTTTAAACAAATACTTTGGG	c13p93354887ES	AAAAACCAAACACCACATATTCTC
chr13	103904205	103904378	105106204	105106377	+	12	173	2	noL1	COLO1N	0	0	L1PA13				c13p103904291FS	GAAATAATTTACACTCCCACCAAC	c13p103904291ES	AATTCATATGGAACCAAACAAGAG
chr14	18765653	18766159	19695653	19696159	+	27	506	3	noL1	COLO1N	0	0	"AluSc8,AluSg7,AluSc"		BC016035		c14p18765906FS	TTTTAGTAGAGACGTGGTTTCACC	c14p18765906ES	ATCACAAGGTGAAGAGATTGAGAC
chr14	23198917	23199141	24129077	24129301	+	21	224	3	L1PA3	COLO1N	0	0					c14p23199029FS	GATCAAAAAGATCTGTGGAGAAAG	c14p23199029ES	TAGAAAAGAATGTCCTTTGTAGGG
chr14	23313964	23314203	24244124	24244363	+	28	239	2	noL1	COLO1N	0	0	"(TG)n,L1ME3D"				c14p23314083FS	ATAGTTTACACTAAGAAGGTGCCC	c14p23314083ES	TTAATCAGTTAGCTTGGAATAGCC
chr14	23569494	23569930	24499654	24500090	+	12	436	2	L1PA4	COLO1N	0	0	"L1PA4,L1PA7"				c14p23569712FS	GTATCTCACTGTGGTTTTGATTTG	c14p23569712ES	AACTAGAAATACCATTTGACCCAG
chr14	28874056	28874250	29804305	29804499	+	12	194	2	L1PA4	COLO1N	0	0	"L1PA4,L1ME3F"				c14p28874153FS	TATGGTTGTTTCTTGGTATACGTG	c14p28874153ES	CAAATGTCCAACAATGATAGACTG
chr14	29712156	29712487	30642405	30642736	-	12	331	4	L1PA4	COLO1N	0	0	"HAL1,L1PA4"				c14p29712321FS	TTTAGCCTACTAAGACCCATTTTG	c14p29712321ES	GATGAGTTCATGTCGTTTGTAGAG
chr14	30612035	30612595	31542284	31542844	-	12	560	2	noL1	COLO1N	0	0	"AT_rich,AluSp,AluY"		AP4S1		c14p30612315FS	TGTAGAACGAGATGGCTATTTATG	c14p30612315ES	CTAAAAATACAAAATTAGCTGGGC
chr14	31283989	31284291	32214238	32214540	-	28	302	2	L1PA5	COLO1N	0	0	L1PA5		NUBPL		c14p31284140FS	TTTTAGTAGAGACAGGGTTTCACC	c14p31284140ES	AGCAATAACAAACTAGCTGAAAAAG
chr14	32025583	32025885	32955832	32956134	-	10	302	2	noL1	COLO1N	0	0	L1PA8		AKAP6		c14p32025734FS	ACATTGATTTTTCCTATCCAAGAG	c14p32025734ES	AAATACTGACAAATCAAATCCAGC
chr14	37305435	37305587	38235684	38235836	-	15	152	3	L1PA3	COLO1N	0	0	L1PA15		C14orf25		c14p37305511FS	TATTTCTGCTCCTTTCTTTTTCTC	c14p37305511ES	ACACCGCATATTCTCACTCATAG
chr14	44215805	44215933	45146055	45146183	+	14	128	2	L1PA3	COLO1N	0	0	"L1PA3,AT_rich"				c14p44215869FS	CTCACAGTCTATGATCTTTTGGTG	c14p44215869ES	GGCACTATTCACAGTAGGAAAGAC
chr14	47076388	47076759	48006638	48007009	+	12	371	4	L1PA4	COLO1N	0	0	"(A)n,L1PA4"		"MDGA2,MAMDC1"		c14p47076573FS	TGGTTATTGTTCATTATGTTGTCC	c14p47076573ES	CTAGAAATGGAAGTTCCTTCAAAC
chr14	54652219	54652429	55582466	55582676	+	12	210	5	noL1	COLO1N	0	0	L1PA5				c14p54652324FS	AATCAGAATATTAACATAACCGGC	c14p54652324ES	TTACTTCAACAGTGAAATGGACAG
chr14	55542938	55543147	56473185	56473394	-	11	209	4	L1PA3	COLO1N	0	0	L1PA3				c14p55543042FS	GACCCTATCCCTAAAAAGAAAAAC	c14p55543042ES	TAGACTGGATTAAGAAAATGTGGC
chr14	62536302	62536427	63466549	63466674	+	20	125	4	L1PA3	COLO1N	0	0	L1PA3		KCNH5		c14p62536364FS	AAAATAAAATGTCTTCCTCTTTGC	c14p62536364ES	TTGAGTTCATTGTAGATTCTGGAC
chr14	80656250	80656394	81586497	81586641	+	22	144	2	L1PA3	COLO1N	0	0	"HAL1,L1PA3"		TSHR		c14p80656322FS	TATACAGAAAATCAGAAAGCCTCC	c14p80656322ES	GGCACTATTCACAATAGCAAAGAC
chr14	83677367	83677474	84607614	84607721	-	10	107	2	L1PA4	COLO1N	0	0	"CT-rich,AluSq2"				c14p83677420FS	CAGTTATGGATGGACAACAATTAG	c14p83677420ES	TGCAATAGTTTGCTGAGAATAATG
chr14	87463474	87463575	88393721	88393822	+	11	101	2	noL1	COLO1N	0	0	"LTR41,L1ME2,AluSc"				c14p87463524FS	TAGAGTTTGCTGAGATGCTGTG	c14p87463524ES	TGACATAAGAAATAGAAAAATTGGC
chr14	87568226	87569028	88498473	88499275	-	20	802	3	L1PA4	COLO1N	0	0	ERVL-E-int		BC029479		c14p87568627FS	TTATCACCTAGCTTCCATATACCC	c14p87568627ES	CATATGTAACTAACCTGCACAATG
chr14	91176072	91176409	92106319	92106656	-	12	337	5	L1PA2	COLO1N	0	0	"L2a,L1PA2"		CATSPERB		c14p91176240FS	ATTAATATGTTGAACCAAACTGGG	c14p91176240ES	TCATTCTCAGTAAACTATCGCAAG
chr14	94281717	94282290	95211964	95212537	+	11	573	4	noL1	COLO1N	0	0	"AluSc8,AluSx3,L1M5"				c14p94282003FS	CATGGTTATACTCCAAGTTAAGGG	c14p94282003ES	AACACAGTGAAACCCTGTCTCTAC
chr14	98683867	98684211	99614114	99614458	-	10	344	3	noL1	COLO1N	0	0	AluSx3				c14p98684039FS	ATCTTCTCTTGACAAACTCCCAC	c14p98684039ES	AGCCCTACTCAGCTCTCTCTG
chr14	102721011	102721622	103651258	103651869	+	10	611	4	noL1	COLO1N	0	0	"MER101-int,FLAM_A,AluSq,A-rich"				c14p102721316FS	TGAGAAGTATTTCATACAGGATCG	c14p102721316ES	CTAAAATACAAAATTTAGCTGGGC
chr15	18268992	18269487	20008980	20009475	+	10	495	2	noL1	COLO1N	0	0	ALR/Alpha				c15p18269239FS	AGTCTGTGAAACTTCTTTGTGATG	c15p18269239ES	AAATGCTTCCATCTAGTTTTTACG
chr15	26830902	26831149	29031861	29032108	-	10	247	4	L1PA4	COLO1N	0	0					c15p26831025FS	ATGAATGAAAAATTGTTGATGATG	c15p26831025ES	TAATGCTAAATGACAAGTGAATGG
chr15	36618762	36619106	38831470	38831814	-	10	344	6	L1PA3	COLO1N	0	0	"L1PA3,MIRb"		RASGRP1		c15p36618934FS	GTTTTATGAATGACCACTCTCCTC	c15p36618934ES	TCATTCTCAGTAAACTATCGCAAG
chr15	39329321	39329607	41542029	41542315	+	14	286	6	noL1	COLO1N	0	0	"AT_rich,MER103C"		CHP		c15p39329464FS	AATATCAATCTGAAGAGATGGTCC	c15p39329464ES	GAGATGGAGTCTCGCTCTGTC
chr15	42443651	42443805	44656359	44656513	+	10	154	2	L1PA3	COLO1N	0	0	"AluSz6,L1PA3"		CASC4		c15p42443728FS	TTGAGACAGGATCTCACTCTTTTC	c15p42443728ES	ACATGGATGAAACTGGAAATAATC
chr15	43679776	43679916	45892484	45892624	+	14	140	2	L1PA2	COLO1N	0	0	"L1MC,L1PA2"		PLDN		c15p43679846FS	TATGAGGCTAGCATTACCCTAAAG	c15p43679846ES	GACTGGATTAAGAAAATATGGCAC
chr15	44447328	44447502	46660036	46660210	-	16	174	2	L1PA2	COLO1N	0	0	L1PA2				c15p44447415FS	TTCAAGGTAAATTCAGTTTTAGGC	c15p44447415ES	CAAATGTCCAACAATGATAGACTG
chr15	55017630	55018199	57230338	57230907	-	13	569	4	noL1	COLO1N	0	0	"L1PB1,AluSc5,MLT1B"		"DKFZp451F163,TCF12"		c15p55017914FS	CAGATTTTTGCATCTATGTTCATC	c15p55017914ES	TATGAAATGGACTGTGTTATGGAC
chr15	56211199	56211407	58423907	58424115	+	23	208	4	L1PA2	COLO1N	0	0	L1PA2				c15p56211303FS	CGTTTAAATATCTGACTTTCTGGC	c15p56211303ES	CAAATGTCCAACAATGATAGACTG
chr15	58415263	58415425	60627971	60628133	+	16	162	3	L1PA6	COLO1N	0	0	"L1MC3,(TC)n,L1PA6"				c15p58415344FS	AATTATTGGAATTCTGAGCAAGAG	c15p58415344ES	GCACACATATATTTATTGCAGCAC
chr15	62912248	62912760	65125195	65125707	-	18	512	3	noL1	COLO1N	0	0	"AluJb,AluSx,AluY"				c15p62912504FS	CAATATGGTGAAATCCTGTCTG	c15p62912504ES	TTTTTAATTTTTGTAGAGATGGGG
chr15	71295171	71295339	73508118	73508286	-	16	168	2	L1PA3	COLO1N	0	0	"L1PB1,L1PA3"		NEO1		c15p71295255FS	TCACAGATGGCTTTTATTACATTG	c15p71295255ES	TGATGAGTTCATGTCTTTTGTAGG
chr15	72586993	72587239	74799940	74800186	-	24	246	5	L1PA5	COLO1N	0	0	"MER45A,AluSp,L1PA5"				c15p72587116FS	TTCCTTATGATTGAAGTCAGTTTG	c15p72587116ES	AGATAAGAAATGTCACATCACCAG
chr15	73922020	73922230	76134965	76135175	+	13	210	2	noL1	COLO1N	0	0					c15p73922125FS	no primer	c15p73922125ES	no primer
chr15	84529870	84530534	86728866	86729530	+	14	664	3	L1PA5	COLO1N	0	0	"L1PA11,L1PA5"		AGBL1		c15p84530202FS	AAGATATGCAGGTTTGTTACACAG	c15p84530202ES	ATAGACTGGATTAAGAAAACGTGG
chr15	88566164	88566550	90765160	90765546	-	63	386	3	noL1	COLO1N	0	0	"AluJb,AluSx,(T)n"		SEMA4B		c15p88566357FS	CGATGATGACAAGATCTACTTTTTC	c15p88566357ES	CCTCCTGAGTAGCTAGGATTACAG
chr15	92025621	92025818	94224617	94224814	+	15	197	2	L1PA2	COLO1N	0	0	L1PA2				c15p92025719FS	CGTGATAAATGAACATGAAGTACC	c15p92025719ES	CAAATGTCCAACAATGATAGACTG
chr15	92312289	92312487	94511285	94511483	+	11	198	2	noL1	COLO1N	0	0			BC021741		c15p92312388FS	GAATGACCCTATCTAAACAAGTCC	c15p92312388ES	TCATTGAGAGATCCTACTTGTCAG
chr16	14123431	14123983	14215930	14216482	-	18	552	5	noL1	COLO1N	0	0	"L1PA7,L1MC4a"		MKL2		c16p14123707FS	CTTCTCTCTTTTACCTCTGCTCTG	c16p14123707ES	GAAATACAATTAGACCCAGCAATC
chr16	32304690	32304846	32397189	32397345	-	22	156	5	noL1	COLO1N	0	0	L1MEd				c16p32304768FS	TTAAGATTTTATTTTTGCCTTTGG	c16p32304768ES	GAATTCATATGTAAAACTGGCCTC
chr16	34692620	34692854	34835119	34835353	+	58	234	3	noL1	COLO1N	0	0	"AluSx,AluYc,AluSz"				c16p34692737FS	GTTGCACAGGTTAGTCTTGAACTC	c16p34692737ES	TTTTAAATAAGGAAGAGGAACAGG
chr16	35141554	35141905	35284053	35284404	-	12	351	2	L1PA3	COLO1N	0	0	ALR/Alpha				c16p35141729FS	GGAGTTGAACCATTCTTTTGATAG	c16p35141729ES	AGCGCTCTATATATCCACTTTCAG
chr16	49232755	49233078	50675254	50675577	-	13	323	2	noL1	COLO1N	0	0	MER102a				c16p49232916FS	ACCTCCAACACTGGTCAGTAAC	c16p49232916ES	GTACAATCCAGCCAGTCTTTTG
chr16	59435552	59435693	60878051	60878192	+	10	141	3	L1PA3	COLO1N	0	0	MSTB1				c16p59435622FS	TAATGCACAACAGGATTTAATTTG	c16p59435622ES	TGGAAATCATCATTGTCAGTAAAC
chr16	60631161	60631337	62073660	62073836	+	12	176	2	noL1	COLO1N	0	0	AluY				c16p60631249FS	ACAAGAGAAAGAAATTGCCTAAAG	c16p60631249ES	TAATATTTTTCCAGAAATGAAGGG
chr16	62073416	62073643	63515915	63516142	-	38	227	4	L1PA4	COLO1N	0	0	L1PA4				c16p62073529FS	AAAAGATCTGTTTTCATGGTATCC	c16p62073529ES	TTTATAGAGACATGGATGAAGCTG
chr16	65693284	65693472	67135783	67135971	+	33	188	3	noL1	COLO1N	0	0	MLT1F1				c16p65693378FS	TTCAGTTCTAAGACTGTGCTTTTG	c16p65693378ES	GACTTACTGCAAATGACAAAAATG
chr16	66170198	66170813	67612697	67613312	-	48	615	2	noL1	COLO1N	0	0	"AluSq2,AluSx,AluSq10"		CTCF		c16p66170505FS	TAAAAATACAAAAATTAGCTGGGC	c16p66170505ES	ACCTGAGGTCAGGAGTTTGAG
chr16	67172351	67172564	68614850	68615063	+	10	213	3	noL1	COLO1N	0	0	"G-rich,AluSz"				c16p67172457FS	CAAAACAAAACAAACAGAAAACAG	c16p67172457ES	AGTGACCTCCGTGTCCTAATC
chr16	73107072	73107205	74549571	74549704	+	16	133	2	L1PA4	COLO1N	0	0	"L1PA4,L1PA7"		GLG1		c16p73107138FS	GTCTCGTTGATCTGTCTAATGTTG	c16p73107138ES	ATTAACAAGGATATCCAGGACTTG
chr16	78816961	78817612	80259460	80260111	+	24	651	5	L1PA4	COLO1N	0	0	"AT_rich,L1PA4"	Alu:Stewart			c16p78817286FS	AGATTCAGGGGTAGGAAAATAGTC	c16p78817286ES	TTCTCAACAAACTATTGCAAAGAC
chr17	2050401	2050634	2103651	2103884	-	18	233	2	L1PA5	COLO1N	0	0	"AluJr,L1PA5"		SMG6		c17p2050517FS	ATCTTAGCTCACTGTAACCTCTGC	c17p2050517ES	GATCACTTGAGTTCAGGAATTTG
chr17	3032550	3032758	3085800	3086008	+	12	208	2	L1PA2	COLO1N	0	0	L1PA2				c17p3032654FS	CTGTGCTCAGTGTTACTTTACAGG	c17p3032654ES	CAAATGTCCAACAATGATAGACTG
chr17	24245770	24245961	27221644	27221835	+	17	191	3	noL1	COLO1N	0	0	AluJb		FLOT2		c17p24245865FS	ATATGGCAAAACTCTGTCTCTACC	c17p24245865ES	ATGACTGTAATTCCAGCACTTTG
chr17	29775077	29775297	32750964	32751184	+	17	220	3	L1PA4	COLO1N	0	0	G-rich				c17p29775187FS	GTCCTCAGGAAACACTGTTATGG	c17p29775187ES	CAGTCTATCATTGTTGGACATTTG
chr17	30632717	30632880	33608604	33608767	+	10	163	4	L1PA4	COLO1N	0	0	"L1PA4,ERVL-E-int"				c17p30632798FS	CTTCTAGAACAATGCCTCTCAAAC	c17p30632798ES	CATTAAAAAGGATGAGTTCATGTG
chr17	31993541	31993730	34919428	34919617	-	67	189	2	noL1	COLO1N	0	0	"AluSx1,L1MC5"		GGNBP2		c17p31993635FS	AAAATACAATGATTGAACCTCCC	c17p31993635ES	TCTGAAGCTACTGACAAATCTGAG
chr17	36070591	36071090	38817065	38817564	+	15	499	2	noL1	COLO1N	0	0	"(TTTG)n,AluSx,(A)n,AluSz6"		"KRT222P,DKFZp686P24273"		c17p36070840FS	ACAAAAATTACTTGAACCTGGGAG	c17p36070840ES	CTGGCTGTCTTCATTCTATGTTC
chr17	36490898	36491241	39237372	39237715	+	23	343	5	L1PA4	COLO1N	0	0	"MSTD-int,L1PA4"				c17p36491069FS	GCTAGTATTGCAGGCTGATAGTTC	c17p36491069ES	TTTGAACTGCGTATAGTAAAATGC
chr17	56634200	56634695	59279418	59279913	-	12	495	7	noL1	COLO1N	0	0	"AT_rich,MIR,(T)n,MIRb,AluYc"		BCAS3		c17p56634447FS	TTGTTATTTTTAGTAGAGACCGGG	c17p56634447ES	CATCTCATATTCTTCTGACAATGG
chr17	58993506	58993669	61639774	61639937	-	14	163	2	L1PA3	COLO1N	0	0	"L1PA3,AT_rich,L1M7"		WDR68		c17p58993587FS	TATAGCCAGAGAGATAGGTGGAAC	c17p58993587ES	CGTCTGTAATTCTAGCAACTTGG
chr17	65014139	65014736	67502544	67503141	-	27	597	4	noL1	COLO1N	0	0	"L4,(T)n"		"DKFZp686N0154,MAP2K6"		c17p65014437FS	CTAGTGAAGGACATCGTGTAAATG	c17p65014437ES	CTTTGCAACCTCCTGTTAATCTAC
chr17	68419101	68419454	70907506	70907859	+	25	353	2	L1PA4	COLO1N	0	0	"AluSq2,L1PA4"		SLC39A11		c17p68419277FS	CTGCATTTTCAACTGCTTGTTAG	c17p68419277ES	AAAATAAAATAATATCGCTGCCTC
chr17	69514607	69515090	72003012	72003495	+	10	483	3	noL1	COLO1N	0	0	"AluSp,MER5B"				c17p69514848FS	AATTTTCAGCATTGAACTACCTTC	c17p69514848ES	AATACAGACATGCTGACATTTCC
chr18	12609476	12609882	12619476	12619882	+	15	406	3	noL1	COLO1N	0	0	"AT_rich,AluSg,AluY,L1MB7"		SPIRE1		c18p12609679FS	TTTGAGAACAGGTTTGTTATGTTG	c18p12609679ES	TTTTAAAAATAAACAGCAAGAGGG
chr18	16773650	16774336	18519652	18520338	-	11	686	5	noL1	COLO1N	0	0	ALR/Alpha	Alu:Hormozdiari			c18p16773993FS	TACAAAAAGAGTGTTTCCAAACTG	c18p16773993ES	TGGACCACTTATTTGTGTTATCTG
chr18	24250174	24250514	25996176	25996516	-	24	340	4	L1PA2	COLO1N	0	0	"L1MD2,L1PA2,AT_rich"				c18p24250344FS	TTGAAATAATTACAGCAAAAGACG	c18p24250344ES	TCATTCTCAGTAAACTATCGCAAG
chr18	28255801	28255980	30001803	30001982	-	15	179	3	L1PA4	COLO1N	0	0	"L2c,L1PA4"		FAM59A		c18p28255890FS	TCAATGGCTCTTCACTACTCTAAG	c18p28255890ES	AGAAGTCAGAGAAAAACTGGAAAC
chr18	30386079	30386623	32132081	32132625	-	10	544	3	L1PA2	COLO1N	0	0	L1PA2		DTNA		c18p30386351FS	CTATTCAACTGGCCTTATATTTCC	c18p30386351ES	CGTATGTTTATTGTGGCATTATTC
chr18	59179724	59180265	61028744	61029285	+	10	541	2	noL1	COLO1N	0	0	"L2b,AluSg"		KDSR		c18p59179994FS	AAAGTTGTTTTTAGAGCACAAAGC	c18p59179994ES	TGTGTTTTCATTTATGTAAGGTGG
chr18	60425775	60425985	62274795	62275005	+	15	210	3	L1PA4	COLO1N	0	0	"L2,L1PA4"				c18p60425880FS	AAAAATTCCCTTTAAAAGACATCC	c18p60425880ES	GCATAACAGGCTTATCTAGGAGAG
chr19	6913717	6914216	6962717	6963216	+	19	499	6	L1PA5	COLO1N	0	0	"AluSx1,(A)n"		GPR127		c19p6913966FS	AGTTTATTTTCTTACGCACAGGAC	c19p6913966ES	CTAATGTAAATGACGAGTTAACGG
chr19	13601835	13602040	13740835	13741040	-	16	205	2	noL1	COLO1N	0	0	MLT1H				c19p13601937FS	ATAAGACGTGGTTATTAAAGTGCC	c19p13601937ES	ACTCAGTCTACAGATTCAAACACG
chr19	15860488	15860742	15999488	15999742	+	19	254	3	noL1	COLO1N	0	0	(CAGAGA)n		CYP4F2		c19p15860615FS	TGTCCACATTTAACTCCATACATC	c19p15860615ES	TAGACATAGACACAGACACACACG
chr19	32427742	32428116	27735902	27736276	-	10	374	2	noL1	COLO1N	0	0	ALR/Alpha	"Alu:Hormozdiari,LINE:Iskow"			c19p32427929FS	AAAACTAGACAAAATCATTCCCAG	c19p32427929ES	ATTCCACAAAAAGAGAGTTTCAAG
chr19	35581062	35581198	30889222	30889358	-	10	136	4	L1PA7	COLO1N	0	0	"L1MD2,L1PA7"		ZNF536		c19p35581130FS	ATTTAAGAGCTCACAAAACAGACC	c19p35581130ES	TAGACTGGATAAAGAAAATGTGGC
chr19	37281299	37281784	32589459	32589944	-	12	485	3	noL1	COLO1N	0	0	"LTR54,Tigger2a"				c19p37281541FS	CTTACATTCAGATTTTCTTCCACC	c19p37281541ES	CTAAGGAAGTGTTGGATCTGTTTC
chr19	52005651	52006352	47313811	47314512	-	12	701	5	noL1	COLO1N	0	0	"AT_rich,AluY,AluSz,AluSc5"				c19p52006001FS	TGTTAACCTTTTTATTTTTCTTTTCC	c19p52006001ES	GTGTCTGTAATCCCAGCTACTCAG
chr19	55252232	55252813	50560420	50561001	+	12	581	4	noL1	COLO1N	0	0	"AluSx4,AT_rich,AluSx1,AluYc"		FLJ26850		c19p55252522FS	ATGTTTCCAGGATCTATGCTTTAC	c19p55252522ES	ATATGGTGAAACCCCATCTCTAC
chr2	15496841	15497069	15579390	15579618	+	10	228	2	noL1	COLO1N	0	0	"AluYk4,L1MEc"		"NBAS,NAG"		c2p15496955FS	CAGTATTCGTGTGGGAGTGAC	c2p15496955ES	AGGAATAGTTCAAGTTCCAGTCAG
chr2	16864195	16864939	17000714	17001458	-	137	744	4	noL1	COLO1N	0	0	L1PA7				c2p16864567FS	TTCTAGATTTTTCTCTGAACCTGC	c2p16864567ES	TCATTAGAGAAATGCAAATCAAAG
chr2	23300937	23301043	23447432	23447538	-	13	106	3	L1PA2	COLO1N	0	0					c2p23300990FS	CTAACTGTGCTTTCTCAGACCTC	c2p23300990ES	ACACCGCATATTCTCACTCATAG
chr2	35599909	35600457	35746405	35746953	+	50	548	2	noL1	COLO1N	0	0	"MER61-int,AluY"				c2p35600183FS	GATTATTTTTCCCTCAATGAACTG	c2p35600183ES	AAAAGTACAAAAATTAGCCAGGTG
chr2	40774920	40775290	40921416	40921786	+	19	370	2	L1PA4	COLO1N	0	0	"L2c,L1PA4"				c2p40775105FS	TTTAAAATTCCCCACGTATAATTC	c2p40775105ES	AACTAGAAATACCATTTGACCCAG
chr2	49290509	49290669	49437005	49437165	+	18	160	2	noL1	COLO1N	0	0	"MLT1F2,L1PA6"				c2p49290589FS	GTTTTGTTTACCTACTCAAGCCTC	c2p49290589ES	TTCTTGCATTAAATTTTTCTCTCC
chr2	49365518	49365651	49512014	49512147	+	33	133	2	L1PA4	COLO1N	0	0	"L1M6,L1PA4"				c2p49365584FS	AAAGAATGCAAATTACCTATGGTC	c2p49365584ES	TAGACTGGATTAAGAAAATGTGGC
chr2	52689440	52689635	52835936	52836131	-	16	195	3	noL1	COLO1N	0	0	"L1ME4a,AluY"				c2p52689537FS	TCCACTTCTTTTCCTTTTCTTTC	c2p52689537ES	AGCTTTATGGTAACTCAGTTCAGG
chr2	52922882	52923275	53069378	53069771	-	10	393	5	L1PA2	COLO1N	0	0	"L1PA2,L1ME1"				c2p52923078FS	CTTTAATTTGTCTCTGGGATTTTC	c2p52923078ES	TCATTCTCAGTAAACTATCGCAAG
chr2	55618917	55619450	55765413	55765946	-	45	533	3	noL1	COLO1N	0	0	"AluJr,AluSp,MIRc"		CCDC104		c2p55619183FS	TGTGGCAAATCTATTCTCAATATG	c2p55619183ES	ATGTACTAGGGCAGGGACTATATG
chr2	56873313	56873732	57019809	57020228	+	13	419	6	L1PA3	COLO1N	0	0	"L2a,L1PA3"				c2p56873522FS	GGCTATAATGGTATTGACCTGTTC	c2p56873522ES	TCATTCTCAGTAAACTATCGCAAG
chr2	59101715	59102091	59248211	59248587	-	15	376	3	noL1	COLO1N	0	0	AluSc		"AK055400,CR593447"		c2p59101903FS	GAGGGAATGATTTCCACATTATAG	c2p59101903ES	CTCAAATGAGTTTCCTCCTAAAAG
chr2	66263777	66263889	66410273	66410385	+	18	112	5	L1PA2	COLO1N	0	0	L1PA2				c2p66263833FS	ATGTTTTTGTGTTGTTTCATTTTG	c2p66263833ES	CAAATGTCCAACAATGATAGACTG
chr2	72347940	72348407	72494432	72494899	-	11	467	2	noL1	COLO1N	0	0	"L1PA3,THE1D-int"		EXOC6B		c2p72348173FS	CTCTCTGTTTGTCTGTTATTGGTG	c2p72348173ES	GATTTTTATTTGTTGAGATGACCC
chr2	77255033	77255753	77401525	77402245	-	142	720	7	L1PA4	COLO1N	0	0	"AluSx,L1PA4"		LRRTM4		c2p77255393FS	CCATTCTGTCATACTAGGCTGTAG	c2p77255393ES	CTGTAATCCTAGCTATTCTGGAGG
chr2	105670923	105671076	106304491	106304644	-	11	153	6	noL1	COLO1N	0	0	"AluSx1,AluY"				c2p105670999FS	TCTAGTTTCCCTTCTCAGCCTAC	c2p105670999ES	TCTATCATGATTCTCTGCAAAAAC
chr2	120667782	120668003	120951312	120951533	+	22	221	2	L1PA3	COLO1N	0	0	"L1PA3,L1MB4"				c2p120667892FS	CCCATATGTTTACCTTTACTGGAG	c2p120667892ES	ATGATGAGTTCCTGTCCTTTGTAG
chr2	129683332	129683556	129966862	129967086	+	38	224	3	noL1	COLO1N	0	0	L1MEf				c2p129683444FS	TTATAAGGCTCTGGATAATTTTGG	c2p129683444ES	ATTGGCAAAAGACAAGGAATATAG
chr2	132728993	132729650	133012523	133013180	+	19	657	14	noL1	COLO1N	0	0	SSU-rRNA_Hsa		LOC554226		c2p132729321FS	ATTGGAATGAGTGCACTTTAAATC	c2p132729321ES	AGTCTCGTTCGTTATTGGAATTAG
chr2	134284522	134284743	134568052	134568273	+	15	221	5	L1PA4	COLO1N	0	0	A-rich				c2p134284632FS	CTTCCCTATTCTTGCATCTCTTAG	c2p134284632ES	ATGATGAGTTCATGTCCTTTGTAG
chr2	138616528	138616981	138900058	138900511	+	11	453	2	noL1	COLO1N	0	0	L1PA5				c2p138616754FS	TGTAAAGAAAAACATTGCAACAAC	c2p138616754ES	TATAGTTTGAAGTCAGGTAGCGTG
chr2	143486059	143486199	143769589	143769729	+	38	140	6	L1PA2	COLO1N	0	0	L1PA2		KYNU		c2p143486129FS	TTTGTACTCCATAGTCCCTTTTTC	c2p143486129ES	CAAATGTCCAACAATGATAGACTG
chr2	145107630	145108008	145391160	145391538	-	11	378	2	noL1	COLO1N	0	0	L1PA7				c2p145107819FS	AGAATGTGCAGGTTTGTTACATAG	c2p145107819ES	CCAAAATAGACAAATGGGATCTAC
chr2	153821461	153821714	154113215	154113468	-	10	253	2	noL1	COLO1N	0	0	L1PA3				c2p153821587FS	AGCACTTCTCTGTATCGGTTAGTC	c2p153821587ES	GGAGTTCCCTTTCCTAGTCAAAC
chr2	160409034	160409615	160700788	160701369	-	13	581	6	L1PA16	COLO1N	0	0	"L1ME4a,L1PA15,L1MD"		LY75		c2p160409324FS	AAAGCTACCCAGTCATTTTATGAG	c2p160409324ES	TACAAGTGGAGGTTAAACACTGAG
chr2	162473071	162473590	162764825	162765344	+	13	519	4	L1PA4	COLO1N	0	0	L1PA4	Alu:Stewart	SLC4A10		c2p162473330FS	TTTTAGCTTTCAAATTACCCTTTG	c2p162473330ES	AAGTAGAATGAGAAAAATGCAACC
chr2	166487960	166488257	166779714	166780011	-	91	297	2	noL1	COLO1N	0	0	"L1PB3,AluY"		TTC21B		c2p166488108FS	GAGTGGACAAATAAAATGTGGTC	c2p166488108ES	GCTAACATGGTGAAATCCTGTC
chr2	168206430	168206565	168498184	168498319	-	12	135	2	noL1	COLO1N	0	0	L2a				c2p168206497FS	TCCATCTTCCTAAATCCAGTAGTC	c2p168206497ES	AATTTGAGAAGCAAGTGATAAACC
chr2	169594031	169594530	169885785	169886284	-	27	499	2	noL1	COLO1N	0	0	"(T)n,AluYb8"	Alu:dbRIP	ABCB11		c2p169594280FS	CACTGTGAATATTCTGATCATGTG	c2p169594280ES	GAAACCCCGTCTCTACTAAAAATAC
chr2	179561405	179561728	179853160	179853483	+	12	323	6	L1PA3	COLO1N	0	0	"L1PA3,L1MB5"		CCDC141		c2p179561566FS	CATTGAGATCACTGATACATTTTG	c2p179561566ES	TTTGTAGGGACATGTATGAAATTG
chr2	190627728	190628546	190919483	190920301	+	30	818	3	L1PA4	COLO1N	0	0	L1PA4				c2p190628137FS	CTGGTCAAGTTGCTTTACACATAC	c2p190628137ES	TCTCAAAAGAAGACATTTATGCAG
chr2	198135933	198136323	198427688	198428078	-	13	390	2	noL1	COLO1N	0	0	L1PA6				c2p198136128FS	GTGTCCAAGTGTTCTCATTGTTC	c2p198136128ES	CTAGAAGAAAACCTACGCAATACC
chr2	200780661	200781325	201072416	201073080	+	11	664	2	noL1	COLO1N	0	0	"L1PB1,AluSx3,L1MA7"				c2p200780993FS	GCAGTAGATCTCAAAACCTTTTTC	c2p200780993ES	AAGGGATAAAAGACTACACATTGG
chr2	204275398	204275803	204567153	204567558	+	11	405	2	noL1	COLO1N	0	0	L1PA8				c2p204275600FS	AGGCAAAGAATTTATGAACAAGTC	c2p204275600ES	GTGGGAGTGTAAATTAGTTCAACC
chr2	212467623	212467794	212759378	212759549	+	159	171	6	L1PA2	COLO1N	0	0	L3		ERBB4		c2p212467708FS	TACCTAAGAAAGGAGTTTGAGAGC	c2p212467708ES	ATTCTCACTCATAGTTGGGAATTG
chr2	222099455	222099952	222391211	222391708	+	10	497	5	noL1	COLO1N	0	0	"AT_rich,AluY,AluSz"		EPHA4		c2p222099703FS	TTCCACAACGTTCTAGTTTATTCC	c2p222099703ES	GAAACACATTATCCCCATTTTAAG
chr2	228554812	228555078	228846568	228846834	-	33	266	4	noL1	COLO1N	0	0	L3		SPHKAP	SPHKAP.L	c2p228554945FS	CTTATTCTGTATGCAGTGGATCTG	c2p228554945ES	GTGACAAATCTAAGGTGTTTCCTC
chr2	228992705	228993009	229284461	229284765	-	21	304	4	L1PA2	COLO1N	0	0	L1PA2				c2p228992857FS	CATTTATCTCTGTGGGCTATCTTC	c2p228992857ES	ATGATGAGTTCATGTCCTTTGTAG
chr2	239059903	239060318	239395164	239395579	-	30	415	3	noL1	COLO1N	0	0	(CA)n				c2p239060110FS	CACACCACACACACTACACTACAC	c2p239060110ES	GAAGGAAGCACTTGGTCATATC
chr20	38907710	38907888	39474296	39474474	+	44	178	2	noL1	COLO1N	0	0	MLT1F				c20p38907799FS	TTCCTAGGTTCCCTTATACCAGAC	c20p38907799ES	CTGTAGTTTCAGCTACTTGGGAG
chr20	42106210	42106504	42672796	42673090	+	10	294	4	noL1	COLO1N	0	0	"L1PA5,LTR37A"		TOX2		c20p42106357FS	AATTCCAATTGCCGTATCATATAG	c20p42106357ES	AAGATATGACAACAGGTTCAAAGG
chr21	10184639	10184879	11162768	11163008	+	35	240	4	L1PA4	COLO1N	0	0	"L1PA4,L1P4a"				c21p10184759FS	AAATGAAAAACAAAAAGACCAGAG	c21p10184759ES	ATGATAGACTGGATGAAGGAAATG
chr21	16444500	16444661	17522629	17522790	-	14	161	2	L1PA3	COLO1N	0	0		Alu:dbRIP	C21orf34		c21p16444580FS	TTTTTGTATTTTTAGTAGAGACGGG	c21p16444580ES	AAATGTCCAACAATGATAGACTGG
chr21	17627663	17627818	18705792	18705947	+	26	155	4	L1PA2	COLO1N	0	0	"L1MB3,L1PA2"				c21p17627740FS	ACCCCAAATCTTTAGGAACATC	c21p17627740ES	TTTGTAGGTACATGGATGAAATTG
chr21	31121712	31121968	32199841	32200097	-	14	256	2	L1PA3	COLO1N	0	0					c21p31121840FS	TAACTCTTACTCCCTCTCATGGTC	c21p31121840ES	TCATTCTCAGTAAACTATCGCAAG
chr21	32685564	32686055	33763693	33764184	+	11	491	3	L1PA4	COLO1N	0	0	"AluJr,L2c,Charlie22a"		URB1		c21p32685809FS	ATTAATGGCCAAAATATCTTCAAC	c21p32685809ES	GAGGGACAGCATTAGGAGATATAC
chr21	33479279	33479417	34557409	34557547	-	11	138	3	noL1	COLO1N	0	0	"MLT1G1,(TC)n"				c21p33479348FS	AATAGAAACCACTTCAGACTCCAG	c21p33479348ES	AGAAGTTCTAGCACTGACTGTGG
chr21	36571707	36571858	37649837	37649988	-	10	151	2	noL1	COLO1N	0	0	"AluSz,AluSc"		DOPEY2		c21p36571782FS	AATTGTTGCAAAGACATTTGTTC	c21p36571782ES	TAGTAAAGCAGACGGGAGATTAAC
chr22	33403025	33403362	35073025	35073362	-	35	337	6	L1PA2	COLO1N	0	0	L1PA2				c22p33403193FS	TTTATATCTTTGATGTTTTGCCTG	c22p33403193ES	TCATCATTCTCAGTAAACTATCGC
chr22	40045472	40046044	41715526	41716098	+	13	572	5	noL1	COLO1N	0	0	"L2a,AluSx1,AluSx"		"KIAA1031,ZC3H7B"		c22p40045758FS	GTTCAAGTGATCCTCTTGCCTC	c22p40045758ES	AGTGCTTATAGTCCCAGCTACTTG
chr22	40547172	40547321	42217226	42217375	-	10	149	2	L1PA4	COLO1N	0	0	"L2a,L1PA4"		"CCDC134,bK250D10.8"		c22p40547246FS	AAGGAGGTAGCTGGATATTTGAC	c22p40547246ES	ACTAACATTGGAAACCACATTGTC
chr22	41289120	41289702	42959176	42959758	-	11	582	3	noL1	COLO1N	0	0	AluJb		"SERHL2,RRP7B"		c22p41289411FS	CAGCTACTTAGGAGGCTGAAGTG	c22p41289411ES	TTTGTATTTTTAGTAGAGACGGGG
chr3	628957	629266	653957	654266	-	10	309	4	noL1	COLO1N	0	0	L1PA5		AK126307		c3p629111FS	TTCTGTGAAGAAAGTCATTGGTAG	c3p629111ES	TTTAGACCAATATCCCTGATGAAC
chr3	2602252	2602778	2627252	2627778	+	11	526	3	L1PA4	COLO1N	0	0	"L1PA4,MIRb"		CNTN4		c3p2602515FS	ATGAACAAACAAAACAACAACAAC	c3p2602515ES	ATAGACTGGATTAAGAAAACGTGG
chr3	3499393	3499504	3524393	3524504	+	16	111	2	L1PA3	COLO1N	0	0	"L1PA3,MLT1L"				c3p3499448FS	GAAACCAAAATAAAACATGATTCC	c3p3499448ES	CAAATGTCCAACAATGATAGACTG
chr3	5406419	5406837	5431419	5431837	+	19	418	5	noL1	COLO1N	0	0	AluSx1				c3p5406628FS	ATATTGTCTGTGGCTGTTTTCAC	c3p5406628ES	TTTATTTTGCTGTTCAGATTGTTC
chr3	7276933	7277686	7301933	7302686	-	12	753	2	L1PA13	COLO1N	0	0	"L1PA13,(TG)n,L1PREC2"		GRM7		c3p7277309FS	GATGCTGGATATTAGACCTTTGTC	c3p7277309ES	ATGAAAGCAGATGTGGAAAGATAG
chr3	21999486	21999703	22024482	22024699	-	35	217	3	L1PA2	COLO1N	0	0	"L1PA2,L1PA14"		ZNF385D		c3p21999594FS	ACATTGACTGTGGATTTGTCATAG	c3p21999594ES	GATAGACTGCATGAAGAAAATGTG
chr3	25849401	25849517	25874397	25874513	-	59	116	5	L1PA5	COLO1N	0	0	MADE1				c3p25849459FS	AGTTGCACAGAATCTTATTGAATG	c3p25849459ES	AAACTATCACAAGGACAAGAAACC
chr3	30112303	30112412	30137299	30137408	+	4159	109	6	L1PA6	COLO1N	0	0	L1PA6				c3p30112357FS	CTCTCTATAATTGCACCTTCAACC	c3p30112357ES	AGAATTTGGCTAATGGAAAGAAAC
chr3	34444187	34444303	34469183	34469299	-	149	116	2	L1PA4	COLO1N	0	0	"AT_rich,L1PREC2,L1PA4"				c3p34444245FS	ACCCACAATAAGATACCATCTCAC	c3p34444245ES	CAAATGTCCAACAATGATAGACTG
chr3	37529798	37529980	37554794	37554976	-	22	182	4	L1PA4	COLO1N	0	0	L1PA4		ITGA9		c3p37529889FS	ACCAGGAGAGAATAACCTATTTCC	c3p37529889ES	TCTGTTGATGTAGACAGTGACCTG
chr3	40135007	40135122	40160003	40160118	-	11	115	2	L1PA4	COLO1N	0	0	"(TTTA)n,L1PA4,L1MC4a"		"slac2-c,MYRIP"		c3p40135064FS	AAATGGCTCTTAAACAAATGAAAC	c3p40135064ES	CAAATGTCCAACAATGATAGAGTG
chr3	41858590	41858702	41883586	41883698	+	26	112	5	noL1	COLO1N	0	0	"AluJb,SVA_A"		ULK4		c3p41858646FS	CAGATCTCCTGAGAACTAAGAGTG	c3p41858646ES	GGAAAAGAAAGAGAGATCAGATTG
chr3	43956279	43956443	43981275	43981439	-	13	164	2	L1PA4	COLO1N	0	0	L1PA7				c3p43956361FS	ATTAACACACCTTCTGAAGCCTAC	c3p43956361ES	TCATCATTCTCAGTAAACTATCGC
chr3	49049079	49049542	49074075	49074538	+	10	463	2	noL1	COLO1N	0	0	"AluJb,L1MC5"		QRICH1		c3p49049310FS	TTTGGCAAGATTACTTCATAGTTG	c3p49049310ES	GACTGAAACATTCTGTGAAATCAG
chr3	58783082	58783596	58808042	58808556	+	13	514	4	L1PA2	COLO1N	0	0	"MER39,L1PA2,(CAAA)n"		C3orf67		c3p58783339FS	ATGAGCTAATGGAAATAAACGAAG	c3p58783339ES	AATATCATACTCTGGGGACTGTTG
chr3	59315409	59315509	59340369	59340469	-	19	100	3	L1PA4	COLO1N	0	0	L1MEc				c3p59315459FS	TTGGAAATTTTAGGAATCTTTCTG	c3p59315459ES	ATAGACTGGATTAAGGAAATGTGG
chr3	68947899	68948216	68865209	68865526	+	11	317	2	L1PA4	COLO1N	0	0	"L1M2,L1PA4"		FAM19A4		c3p68948057FS	AAGAAGTTAAATGGTCTCTGTTGG	c3p68948057ES	AACTAGAAATACCATTTGACCCAG
chr3	77992481	77992774	77909791	77910084	+	30	293	5	L1PA3	COLO1N	0	0					c3p77992627FS	ATATTGCTATTGCACAAGACAAAC	c3p77992627ES	ATGATGAGTTCATGTCCTTTGTAG
chr3	86074094	86074457	85991404	85991767	-	20	363	3	L1PA10	COLO1N	0	0	"L1PA2,L1P2"		CADM2		c3p86074275FS	CACAGCTGATAAATGGTAGAATTG	c3p86074275ES	TCAGGGATCTAGAACTGGAAATAC
chr3	96609471	96610024	95126781	95127334	-	14	553	2	noL1	COLO1N	0	0	"MER61C,MER61-int"				c3p96609747FS	TAGATGTAGGAGACAGATAAGGGG	c3p96609747ES	CACGTAGTTACAGGTCACACTTTC
chr3	98847155	98847432	97364465	97364742	+	13	277	2	L1HS	COLO1N	0	0	L1PA2		"DKFZp434C1418,EPHA6"		c3p98847293FS	CAGACCATCTTCTTTAACCAGTTC	c3p98847293ES	ATGATGAGTTCATGTCCTTTGTAG
chr3	100473963	100474202	98991273	98991512	-	15	239	5	L1PA3	COLO1N	0	0	"L1MEf,(TTTA)n"				c3p100474082FS	GTCATGTAATAGCTTTCATGTTGC	c3p100474082ES	ACCATCATTCTCAGTAAACTCTCG
chr3	124456025	124456335	122973335	122973645	-	14	310	2	L1PA7	COLO1N	0	0	L1PA7		SEC22A		c3p124456180FS	CTTTTGTTTACCTTCATCCTCATC	c3p124456180ES	AGCTTAATGGTGGATATCTGAGAG
chr3	134759075	134759193	133276385	133276503	+	12	118	2	L1PA3	COLO1N	0	0	LTR32				c3p134759134FS	AGTCTCTCGAGTAGATGGGATTAC	c3p134759134ES	ATGATGAGTTCATGTCCTTTGTAG
chr3	143178642	143178958	141695952	141696268	-	10	316	3	noL1	COLO1N	0	0	"AluJb,FRAM"		TFDP2		c3p143178800FS	AAGAAAATCACATATAATGGCTCC	c3p143178800ES	TTCTGAATCTTATTGTTTCTTCAATG
chr3	149878668	149878771	148395978	148396081	-	12	103	2	L1PA3	COLO1N	0	0	L1PA3				c3p149878719FS	GTAAGGGGTCAAGTTAGTGATGAG	c3p149878719ES	TTTACTGTGTGCTAACAAGGAAAG
chr3	155052218	155052810	153569528	153570120	+	11	592	3	noL1	COLO1N	0	0	"(A)n,FLAM_A"				c3p155052514FS	AAATCAGAATCTTTGAGGTTATGC	c3p155052514ES	AAAGGTAACAAGACAAATTTCCAC
chr3	157688329	157688804	156205635	156206110	+	10	475	4	noL1	COLO1N	0	0	L2a		KCNAB1		c3p157688566FS	GCCTCACTTATTTCTCTAAACTCG	c3p157688566ES	AGTAGGAAGGGAAAGAAAGCTTAG
chr3	162174119	162174322	160691425	160691628	-	10	203	3	L1PA2	COLO1N	0	0	"AT_rich,(T)n"		"PPM1L,PP2CE"		c3p162174220FS	CTTCAAAGAAAATAATTGGACCAG	c3p162174220ES	TCATTCTCAGTAAACTATCGCAAG
chr3	162935343	162935512	161452649	161452818	-	10	169	2	L1PA4	COLO1N	0	0	"HSMAR1,L1PA4"				c3p162935427FS	ACTTTGTAATTTCAACCAGAAACC	c3p162935427ES	CAAATGCCAAATAACTGTAGAATG
chr3	172320401	172320849	170837707	170838155	-	109	448	2	L1PA4	COLO1N	0	0	"L1PA4,AluY"		TNIK		c3p172320625FS	AACCATCATTCTCAGCAAACTATC	c3p172320625ES	AATACAAAAATTAGTCGAGCATGG
chr3	172505444	172505898	171022750	171023204	+	25	454	7	L1PA4	COLO1N	0	0	"L1PREC2,L1PA4"		TNIK		c3p172505671FS	TTTTGATTTGCATTTCTCTAATTG	c3p172505671ES	TCATTCTCAGCAAACTATCACAAG
chr3	178589009	178589300	177106315	177106606	-	16	291	3	L1PA2	COLO1N	0	0	"L1PA2,MIRb"				c3p178589154FS	TTAGTTAATCTGCTTGTCCCTTTC	c3p178589154ES	TCATTCTCAGTAAACTATCGCAAG
chr3	180558271	180558488	179075577	179075794	+	24	217	2	noL1	COLO1N	0	0	MLT1G		"MFN1,hfzo2"		c3p180558379FS	GTAATCCCAGCTACTCAGGAGAC	c3p180558379ES	ATAGAAGCCAATGTTGAGCTAATG
chr3	188618569	188618740	187135875	187136046	+	22	171	6	L1PA2	COLO1N	0	0	"L1PA10,L1PA2"				c3p188618654FS	AAATGTCTTCTTTGGAGAAGTGAC	c3p188618654ES	CAAATGTCCAACAATGATAGACTG
chr3	191314655	191315200	189831961	189832506	+	10	545	2	noL1	COLO1N	0	0	AluY		LEPREL1		c3p191314927FS	AGTTTAGAATAAAAATGCTTTCCTG	c3p191314927ES	CCTGATTAACCAAGCTGACTAAC
chr3	196931434	196932013	195445763	195446342	-	12	579	4	noL1	COLO1N	0	0	"MER4-int,AluSp"				c3p196931723FS	TTCTTCTTAGGTCTAAAGCTCTGC	c3p196931723ES	AGAAACCCCATCTCTACTAAAAATAC
chr4	1898563	1898849	1928765	1929051	+	12	286	2	noL1	COLO1N	0	0	MLT1F		WHSC1		c4p1898706FS	TTGTATTTTTAGTAGAGATGGGGG	c4p1898706ES	GCCTGAGTTTTTAATTTTTAAAGG
chr4	14097514	14097810	14488416	14488712	+	16	296	4	L1PA2	COLO1N	0	0	"L1PB1,L1PA2,AluSg"		MGC4836		c4p14097662FS	AAATTTACTGAGACTTGTTTTGGG	c4p14097662ES	ATGATGAGTTCATGTCCTTTGTAG
chr4	14815238	14815413	15206140	15206315	+	11	175	3	L1PA2	COLO1N	0	0	L1PA2				c4p14815325FS	TAGCAACTAACATTTATGGAGCAC	c4p14815325ES	TCATTCTCAGTAAACTATCGCAAG
chr4	17589523	17589685	17980425	17980587	-	12	162	5	L1PA4	COLO1N	0	0	"L1ME1,L1PA4"		LCORL		c4p17589604FS	CACACCTGTAGTCTCAGCTAATTG	c4p17589604ES	TTCTCCTGTAGACAGCTAGGAAAC
chr4	21281020	21281746	21671922	21672648	+	31	726	4	noL1	COLO1N	0	0	"L1PA2,AluY,AT_rich"		KCNIP4		c4p21281383FS	CGATAAAAATAAAATCAAAGTCGG	c4p21281383ES	TCATTCTCAGTAAACTATCGCAAG
chr4	26728268	26728595	27119170	27119497	-	15	327	4	L1PA4	COLO1N	0	0	L1PA4				c4p26728431FS	TCACTTATACTCTCCATTCAGCAG	c4p26728431ES	GAATAGTGCTGCAATAAACATACG
chr4	31137646	31137758	31528548	31528660	-	18	112	2	noL1	COLO1N	0	0	L1PA15				c4p31137702FS	TTCACATTTATTGATTTGGGTATG	c4p31137702ES	TAAAATCACAGCTAGGGGAATTAG
chr4	34446536	34446647	34770141	34770252	-	35	111	3	noL1	COLO1N	0	0	MER4A1				c4p34446591FS	TTTTTCAAGGAGAAAAATTAATGC	c4p34446591ES	TCTGTTCTTGAAATTTGTTTTAACC
chr4	46976835	46977477	47282078	47282720	-	12	642	3	noL1	COLO1N	0	0	"(TA)n,L1M1,AluJr4"		GABRB1		c4p46977156FS	GGTTGGAGAATTCCATCTATTTAC	c4p46977156ES	CTGTAGTTTTAGCTTCTTTGGAGG
chr4	59959787	59960055	60277192	60277460	-	12	268	2	L1PA3	COLO1N	0	0	L1PA3				c4p59959921FS	ATATTTCGTATGTGCGTATGTGAG	c4p59959921ES	TCATTCTCAGTAAACTATCGCAAG
chr4	60427782	60428160	60745187	60745565	+	12	378	4	L1PA3	COLO1N	0	0	"L2a,L1PA3"				c4p60427971FS	GATTCTTTTGATGAAACTGGAAAG	c4p60427971ES	AACCCAAATGTCCAACAATAATAG
chr4	62764426	62764710	63081831	63082115	-	24	284	5	noL1	COLO1N	0	0	"AT_rich,L1MC5"				c4p62764568FS	AATAACGACCACTCCTGATTTTAG	c4p62764568ES	CTTAAAAAGACTGAGAATTGTGGG
chr4	63542374	63542716	63859779	63860121	-	26	342	4	noL1	COLO1N	0	0	"AT_rich,L1PA4"				c4p63542545FS	CTCAGTATGTATTCAAAGGCACTG	c4p63542545ES	AGAACTAGAAATACCATTCGACCC
chr4	76460826	76461528	76241802	76242504	+	13	702	2	noL1	COLO1N	0	0	L1PA5				c4p76461177FS	AGTTTTTATCATGAAGGGCTACTG	c4p76461177ES	GAAAGCAGGAAAGATCTAAAATTG
chr4	86133502	86133741	85914478	85914717	+	13	239	2	L1PA4	COLO1N	0	0	"AT_rich,L1PA4"		C4ORF12		c4p86133621FS	TGTTTACCTAGTTTTGTTGCATTG	c4p86133621ES	TAGACTGGATTAAGAAAATGTGGC
chr4	107125347	107125827	106905898	106906378	-	13	480	3	L1PA2	COLO1N	0	0	"L1PA2,L1P2"				c4p107125587FS	GAGAACCACTACTCTCTTCAAAGC	c4p107125587ES	TCAGTAAACTATCGCAAGAACAAG
chr4	110280039	110280290	110060590	110060841	-	13	251	2	L1PA4	COLO1N	0	0	"L1PA4,L1PA7"		COL25A1		c4p110280164FS	TTGTCTTCTTTTGAGAAGTGTCTG	c4p110280164ES	ATGAGTTCATGTCTTTGTAGGGAC
chr4	138642836	138642985	138423386	138423535	+	58	149	2	L1PA2	COLO1N	0	0	L1PA2				c4p138642910FS	AAAAGCACCAAACTTTCCTTTAG	c4p138642910ES	CAAATGTCCAACAATGATAGACTG
chr4	142367646	142367780	142148196	142148330	-	24	134	3	L1PA4	COLO1N	0	0	L1PA4		ZNF330		c4p142367713FS	TTTTCTTCATTAGGGAAAACAAAG	c4p142367713ES	CGTATGTTTATTGTGGCACTATTC
chr4	143663897	143664305	143444447	143444855	-	61	408	5	L1PA3	COLO1N	0	0	"L1PA3,MER5A"		INPP4B		c4p143664101FS	AGAATTAGAGTTGATTCCAAGCTG	c4p143664101ES	TCATTCTCAGTAAACTATCGCAAG
chr4	147176891	147177006	146957441	146957556	+	16	115	2	noL1	COLO1N	0	0	"L1PB1,L1M5"				c4p147176948FS	AAATGAAAGCCTCTGACTGATTC	c4p147176948ES	GAATACTATGCAGCCATAAAAAGG
chr4	154452200	154452532	154232750	154233082	-	12	332	5	L1PA3	COLO1N	0	0	"AluJr,L1PA3"		TRIM2		c4p154452366FS	TGCATGGTCTTCTGAATAGAATAG	c4p154452366ES	TCATTCTCAGTAAACTATCGCAAG
chr4	164568318	164568436	164348868	164348986	-	10	118	2	noL1	COLO1N	0	0	HERV9-int				c4p164568377FS	AGAGGAAGAGAAAAAGAAGGAGTC	c4p164568377ES	TTTTTACAGAGTGCTGATTAGTGC
chr4	164713889	164714197	164494439	164494747	-	10	308	2	L1PA3	COLO1N	0	0	"L1PA3,L1P4,(TTA)n"		1-Mar		c4p164714043FS	CAGAGAAAAATAGGAGGTCAGAAG	c4p164714043ES	AACTAGAAATACCATTTGACCCAG
chr4	167758102	167758220	167538652	167538770	+	20	118	4	noL1	COLO1N	0	0	L1MB3				c4p167758161FS	TTTTTGTGTTTCTAGGGATTTTTC	c4p167758161ES	TGGAACAACAAAACAAAAGATAAC
chr4	181654934	181655284	181417940	181418290	+	14	350	2	L1PA3	COLO1N	0	0	"(CA)n,L1PA3"				c4p181655109FS	ATTTAAAGGAAAATTGGTCAGTTG	c4p181655109ES	TCATTCTCAGTAAACTATCGCAAG
chr5	8137159	8137330	8084159	8084330	-	11	171	2	L1PA3	COLO1N	0	0	L1PA3				c5p8137244FS	CACAAAGGTTCTATTCAGTCAGTG	c5p8137244ES	ATGATGAGTTCATGTCCTTTGTAG
chr5	8313395	8313642	8260395	8260642	+	14	247	5	L1PA3	COLO1N	0	0	L1PA3				c5p8313518FS	TTTTTAGTAGAGATGGGGTTTCAC	c5p8313518ES	CAAATGTCCAACAATGATAGACTG
chr5	13715237	13715363	13662237	13662363	+	12	126	6	L1PA4	COLO1N	0	0	L1PA4				c5p13715300FS	AAAAATGAATGGAGGACAAATAAG	c5p13715300ES	TTCCATATTCTATTGGCTAGAAGC
chr5	23898892	23899434	23863135	23863677	-	12	542	2	noL1	COLO1N	0	0	"(CA)n,HSMAR2,AluSc5,AluY"				c5p23899163FS	CATCAGATAACCTAACACCAAAAC	c5p23899163ES	AGACATGTTACAACAAATACTGGG
chr5	25864995	25865280	25829238	25829523	-	12	285	3	noL1	COLO1N	0	0					c5p25865137FS	TTTTTAGTAAAGAAGGGCTTTCAC	c5p25865137ES	TGAAACCAAGAAGAGTCCAAATAG
chr5	41988663	41988854	41952906	41953097	-	38	191	3	L1PA3	COLO1N	0	0	L1MEg				c5p41988758FS	AATATATTGGCATGAAGTTGTTTG	c5p41988758ES	AACACCACATGTTCTCACTCATAG
chr5	49927388	49927718	49891631	49891961	-	16	330	4	L1PA4	COLO1N	0	0	"AluSx1,L1PA4"				c5p49927553FS	TTGTAGAAAGGCTTTTAGGTATGC	c5p49927553ES	ACCATCATTCTCAGGAAACTATTG
chr5	51492571	51492685	51456814	51456928	+	13	114	2	noL1	COLO1N	0	0	L1PA8				c5p51492628FS	TATAGTTTGAAGTCAGGTAGCGTG	c5p51492628ES	CACAACTTCATGCTAAAAACACTC
chr5	52611204	52611335	52575447	52575578	-	10	131	2	L1PA2	COLO1N	0	0	"L1PA2,L1MEc"				c5p52611269FS	AGGTGAATAAAAGAGCAAAAAGAG	c5p52611269ES	CAAATGTCCAACAATGATAGACTG
chr5	60267736	60267865	60231979	60232108	-	42	129	3	noL1	COLO1N	0	0	L1PB1		ERCC8		c5p60267800FS	TTGTTTTTAATTCTGTTTGTGTGG	c5p60267800ES	ATTAAATGCATACCTCAGGAAGTC
chr5	64040379	64040680	64004623	64004924	-	16	301	7	L1PA2	COLO1N	0	0	L1PA2				c5p64040529FS	ACAGGTGAAAACCTTTATTCTTTG	c5p64040529ES	TCATTCTCAGTAAACTATCGCAAG
chr5	64707814	64708071	64672058	64672315	+	15	257	3	L1PA3	COLO1N	0	0	"L1PA3,AluSx"		ADAMTS6		c5p64707942FS	CAAGTGATCCTTCCACATCAG	c5p64707942ES	ATGATAGGCTGGATTAAGAAAATG
chr5	85545948	85546465	85510192	85510709	-	14	517	6	L1PA3	COLO1N	0	0	"L1P3,L1PA3"				c5p85546206FS	TACCCCTTCATGTTAAAAATTCTC	c5p85546206ES	TAGACTGGATTAAGAAAATGTGGC
chr5	85767976	85768296	85732220	85732540	+	36	320	8	L1PA3	COLO1N	0	0	L1PA3				c5p85768136FS	ATAGTGCTAACTTGTTCCAGTTCC	c5p85768136ES	ACTAGAAATACCGTTTGACTCAGC
chr5	92628487	92628972	92602731	92603216	+	24	485	5	L1PA3	COLO1N	0	0	L1PA3				c5p92628729FS	CAATGGTGCCTTTTAGTTTCATAC	c5p92628729ES	TCATTCTCAGTAAACTATCGCAAG
chr5	97133128	97133602	97107372	97107846	-	10	474	2	noL1	COLO1N	0	0	L1PA3				c5p97133365FS	CCTTTAAGCACTTCTCTGTATTGG	c5p97133365ES	TAGTCAAAGAAAGGGGTGACAG
chr5	102040807	102040979	102012908	102013080	+	17	172	5	L1PA2	COLO1N	0	0	"L1PA2,MLT1A0"				c5p102040893FS	AGTGATTGGATAGGAAAATGAAAG	c5p102040893ES	CGTATGTTTATTGTGGCATTATTC
chr5	106193044	106193249	106165145	106165350	+	10	205	2	L1PA4	COLO1N	0	0	"L1PA4,LTR16A2"				c5p106193146FS	GAAGATTTTAGTAGTGGTGATGCC	c5p106193146ES	TAGACTGGATTAAGAAAATGTGGC
chr5	124935956	124936449	124908057	124908550	+	42	493	3	L1PA4	COLO1N	0	0	"L2c,MIRb,L1PA4,Ricksha_c"				c5p124936202FS	GGAAAATAGCCTAACAAGAAACAG	c5p124936202ES	AACTAGAAATACCATTTGACCCAG
chr5	128518342	128518735	128490443	128490836	-	12	393	3	L1PA3	COLO1N	0	0	"L1PA3,MER50B,L1MEc"				c5p128518538FS	ATGTTTTTGAAATTTGTTCATTTG	c5p128518538ES	ATGATGAGTTCATGTCCTTTGTAG
chr5	131883595	131883753	131855696	131855854	+	10	158	4	L1PA2	COLO1N	0	0	L1MD				c5p131883674FS	TGGTTTTTGTCCTTTATTCTGTTC	c5p131883674ES	TCATTCTCAGTAAACTATCGCAAG
chr5	136407916	136408262	136380017	136380363	-	19	346	3	L1PA2	COLO1N	0	0	"L1PA2,MIRb"		SPOCK1		c5p136408089FS	TAGTAGAGCTTTATTGGACACCAG	c5p136408089ES	TCATTCTCAGTAAACTATCGCAAG
chr5	147055283	147055481	147075090	147075288	-	12	198	3	noL1	COLO1N	0	0	"(TG)n,(CAGAGA)n"		JAKMIP2		c5p147055382FS	TACTAAGTTTGGCAGTTTAGGGAC	c5p147055382ES	TTTACTAAATTTTGTCCAACCTCC
chr5	147611540	147611917	147631347	147631724	-	16	377	3	L1PA2	COLO1N	0	0	"L1PA2,L1PREC2"				c5p147611728FS	GAGATTGAGTTCTTATGCTTGTTG	c5p147611728ES	AACATGGCATATTCTCACTCATAG
chr5	153356273	153356765	153376080	153376572	+	23	492	6	noL1	COLO1N	0	0	"AluSq2,L1MB7"		FAM114A2		c5p153356519FS	TTTTTATTTTAGCCATCCTAGTGG	c5p153356519ES	AGGAAAGAACAGTCTTTTCAACAC
chr5	153420020	153420163	153439827	153439970	+	77	143	3	noL1	COLO1N	0	0	"(A)n,AluSz"				c5p153420091FS	CATGAAAACTCAAGAGAATGATTG	c5p153420091ES	ACAGAGTGACTGGCAGTGTATATC
chr5	159770100	159770426	159837522	159837848	+	19	326	2	L1PA4	COLO1N	0	0	"L1PA4,MIRb"		SLU7		c5p159770263FS	CTATAATCCGAGCACTTTGGG	c5p159770263ES	AGTTCCCACTATTTGCTAGTTCAC
chr5	172655198	172655356	172722592	172722750	+	10	158	3	L1PA4	COLO1N	0	0	L1PA4				c5p172655277FS	ACTTATGATCTGTGTGACTTTTGG	c5p172655277ES	GATAGGTTAGGACAGGGAGTGTC
chr5	174444783	174444960	174512177	174512354	-	11	177	3	L1PA4	COLO1N	0	0	L1PA4				c5p174444871FS	AGAAATGACCTAGAGAACTGGTTG	c5p174444871ES	GTGGCACTATTCACAATAACAAAG
chr5	176576266	176576620	176643660	176644014	-	16	354	6	noL1	COLO1N	0	0	"L1MB1,FLAM_C"		NSD1		c5p176576443FS	TTCTAGGAGTTTCATAGTTGGAGG	c5p176576443ES	GGAAATTAAAACAATCACATTTGC
chr6	1373792	1373893	1428793	1428894	-	11	101	2	L1PA3	COLO1N	0	0	"AluJb,L1PA3"				c6p1373842FS	TTAAATAATGTGTCACTCCTCTGC	c6p1373842ES	TAGACTGGATTAAGAAAATGTGGC
chr6	47964150	47964370	47856191	47856411	-	16	220	4	L1PA3	COLO1N	0	0	L1PA3		C6orf138		c6p47964260FS	GAAACCCCGTCTCTACTAAAAATAC	c6p47964260ES	TAGACTGGATTAAGAAAATGTGGC
chr6	57779332	57779446	57671373	57671487	-	18	114	2	L1PA3	COLO1N	0	0	L1PA3				c6p57779389FS	ATGTATGTGTTGTAATGGGATGTG	c6p57779389ES	CAAATGTCCAACAATGATAGACTG
chr6	66120408	66120660	66063687	66063939	-	11	252	3	noL1	COLO1N	0	0			EYS		c6p66120534FS	CATAAATTTGTTACCTGCAAATCC	c6p66120534ES	TGGAGAAGTAGAAATAATTGAGGG
chr6	67867882	67868249	67811161	67811528	+	16	367	2	L1PA4	COLO1N	0	0	L1PA4				c6p67868065FS	AATCTCTGTCTGGATTTTATGTCC	c6p67868065ES	AACTAGAAATACCATTTGACCCAG
chr6	68647540	68647671	68590819	68590950	+	19	131	2	L1PA2	COLO1N	0	0	"L1PA2,MER34,LTR7C"		LOC648232	LOC648232.L	c6p68647605FS	TAAAAAGACAGGAATGTAAGGTCC	c6p68647605ES	GACTGGATTAAGAAAATATGGCAC
chr6	72085943	72086302	72029222	72029581	+	46	359	3	L1PA3	COLO1N	0	0	L1PA3				c6p72086122FS	AGAGAAAGAGAAAATGCTTTGATG	c6p72086122ES	TGGAAATCATCATTCACAGTAAAC
chr6	73342520	73342753	73285799	73286032	+	17	233	3	L1PA2	COLO1N	0	0	"L1MC1,L1PA2"				c6p73342636FS	ATAAGATGCTGCCAAACTATCTTC	c6p73342636ES	TCATTCTCAGTAAACTATCGCAAG
chr6	74046846	74047021	73990125	73990300	-	15	175	3	noL1	COLO1N	0	0	"AluJb,AluSp"		"AK090984,AL832252,KHDC1"		c6p74046933FS	GAGAAATGTGATAGCCAGTCCTAC	c6p74046933ES	TGCAAACTGACAAGATTTAAAAAG
chr6	74425212	74425387	74368491	74368666	-	20	175	5	noL1	COLO1N	0	0	"MER33,AluSx1"				c6p74425299FS	TTTGTATTTTTAGTAGAGACGGGG	c6p74425299ES	CACATGGTCTAGAACTATGCTGTC
chr6	74847488	74847589	74790768	74790869	-	11	101	3	noL1	COLO1N	0	0	L1PA5		AF086303		c6p74847538FS	TATCAGCTTAAGTAGATTTTGGGC	c6p74847538ES	TATTCCAATCAATAGAAGAACACG
chr6	77828951	77829064	77772232	77772345	+	13	113	3	L1PA2	COLO1N	0	0	"L1M2,AT_rich"				c6p77829007FS	CTAAATAAAATCCAGGCAAAACAC	c6p77829007ES	TCATTCTCAGTAAACTATCGCAAG
chr6	79588283	79588479	79531564	79531760	+	11	196	2	L1PA5	COLO1N	0	0	"HAL1,L1PA5"				c6p79588381FS	CATCCAAAATTTCATTTACTTTCC	c6p79588381ES	TCATTCTCAGCAAACTATCACAAG
chr6	82112618	82112833	82055899	82056114	+	28	215	5	L1PA3	COLO1N	0	0	"L1PA3,HERVH-int"				c6p82112725FS	AATTAGCTTTACTCAACATGTCCC	c6p82112725ES	CAAATGTCCAACAATGATAGACTG
chr6	82595225	82595813	82538506	82539094	+	14	588	5	noL1	COLO1N	0	0	L1MB7				c6p82595519FS	TAGCAGGATTCTTTCTTCTTTTTC	c6p82595519ES	CCCCTCTCATAATGTCTATTCAAC
chr6	84564110	84564236	84507391	84507517	-	26	126	3	L1PA2	COLO1N	0	0	L1PA2				c6p84564173FS	ACATACAGTAAGTGCCTAGAAGGG	c6p84564173ES	CAAATGTCCAACAATGATAGACTG
chr6	86796651	86796783	86739932	86740064	-	24	132	3	noL1	COLO1N	0	0					c6p86796717FS	CAGAACTCTAACTTGCACATCAAC	c6p86796717ES	AAGATCACATCACTGCACTCC
chr6	87259349	87259578	87202630	87202859	-	46	229	2	noL1	COLO1N	0	0	L1PA4				c6p87259463FS	ATAGTGCCACAATAAACATACGTG	c6p87259463ES	TATCTGATCTTTGACAAACCTGAC
chr6	88309037	88309423	88252318	88252704	+	15	386	8	noL1	COLO1N	0	0	"(A)n,L1PA4"		RARS2		c6p88309230FS	TAGTAGAGACAGGGTTTCTCCTTG	c6p88309230ES	AAGCATCTACTCTGTTGAAGTGAC
chr6	97930996	97931131	97824275	97824410	-	28	135	3	L1PA3	COLO1N	0	0	Tigger1		AK091365		c6p97931063FS	TATTGTAGAGAACTTTCACCTCCC	c6p97931063ES	TCATTCTCAGTAAACTATCGCAAG
chr6	110307729	110308074	110201036	110201381	-	11	345	2	L1PA4	COLO1N	0	0	"MER61-int,L1PA4,LTR17"				c6p110307901FS	CTACTAAATCTTGCAACTGCACAC	c6p110307901ES	ACCTTAAGAGCTGTAACACTCACC
chr6	112213557	112214142	112106864	112107449	-	21	585	4	L1PA5	COLO1N	0	0	L1PA5		FYN		c6p112213849FS	GTTACAGCACTTCTCATGTCACTC	c6p112213849ES	TCATTCTCAGCAAACTATCACAAG
chr6	113660345	113660661	113553652	113553968	+	23	316	4	L1PA2	COLO1N	0	0	L1PA2				c6p113660503FS	CAGTCTTTTGATGCTGTCTGTTAG	c6p113660503ES	AATTGGAAATCATCTTTCTCAGTC
chr6	125814851	125814999	125773152	125773300	-	36	148	2	L1PA6	COLO1N	0	0	L1PA6				c6p125814925FS	AGACCCTCATAAACAACTGCTAAG	c6p125814925ES	ACCTGTAATCCCAGCTACTCAG
chr6	137210838	137211285	137169145	137169592	-	13	447	2	noL1	COLO1N	0	0	L1PA5		PEX7		c6p137211061FS	AGTTTGAAGTCAGGTAGCTTGATG	c6p137211061ES	ACCACATGATTATCTCAACAGATG
chr6	138346264	138347041	138304571	138305348	-	12	777	4	L1PA5	COLO1N	0	0	"L2a,L1PA5,L1PA4"				c6p138346652FS	CCTCTTGCTCTCTCTGCTGTAG	c6p138346652ES	ATGTAAATGACAAGTTAATGGGTG
chr6	142114935	142115160	142073242	142073467	+	18	225	3	L1PA2	COLO1N	0	0			AK097143		c6p142115047FS	TTCTGATTTTTCCTAACCTTTGAG	c6p142115047ES	TCATTCTCAGTAAACTATCGCAAG
chr6	152260966	152261274	152219273	152219581	-	11	308	5	noL1	COLO1N	0	0	"SVA_D,L1PBa1"		ESR1		c6p152261120FS	AGTTCGTGTAGTCATGTAGTGCTG	c6p152261120ES	GATCCTGTTGATCTGTGACCTTAC
chr6	155173768	155174286	155132076	155132594	-	10	518	2	L1PA8	COLO1N	0	0	L1PA8		RBM16		c6p155174027FS	AGAGTTTACATATGGGCAAAGAAG	c6p155174027ES	CCTAATGTAAACGACAAGTTGATG
chr6	156555633	156555739	156513941	156514047	-	32	106	4	L1PA13	COLO1N	0	0	L1PA13				c6p156555686FS	CCTTTTGTTCAGCTTTTCTTAAAC	c6p156555686ES	CTATTCACAATAGCAAAGACATGG
chr6	163614745	163615117	163694755	163695127	-	23	372	4	L1PA5	COLO1N	0	0	"L1PA5,L1M5"		PACRG		c6p163614931FS	GCGACTTTTTCTTTTTGATTAGAC	c6p163614931ES	AACTATCGCAAGGACAAAATAAAC
chr7	7319031	7319204	7352506	7352679	-	21	173	4	L1PA4	COLO1N	0	0	L1ME1				c7p7319117FS	TTTTTGTACAGTGATCTTGCATTC	c7p7319117ES	TCATTCTCAGCAAACTATCTCAAG
chr7	8303904	8304213	8337379	8337688	-	12	309	2	L1PA3	COLO1N	0	0			CR624517		c7p8304058FS	ACTATGTAAGAGAAGCAACCCAAG	c7p8304058ES	TCATTCTCAGTAAACTATCGCAAG
chr7	13740274	13740563	13773749	13774038	+	82	289	4	L1PA2	COLO1N	0	0	"Charlie10,AT_rich,(T)n"				c7p13740418FS	AAAAATCAGAAGCAGTTACTGGAG	c7p13740418ES	TTTTGAGACTCTTCTCTCTTTTCC
chr7	56246300	56246400	56278806	56278906	+	26	100	2	noL1	COLO1N	0	0	AluSp				c7p56246350FS	TAATTCACTTCGTTACCTACCAGG	c7p56246350ES	TAGATAATGGAAGAGGAAACTTGG
chr7	61084818	61085160	61080876	61081218	-	15	342	3	noL1	COLO1N	0	0	ALR/Alpha				c7p61084989FS	AGCAGTTTTGTAACACACTTTTTG	c7p61084989ES	AAAGTTTCTGAGAATGCTTCTGTC
chr7	61085923	61086336	61081981	61082394	-	38	413	6	noL1	COLO1N	0	0	ALR/Alpha				c7p61086129FS	GAAGAATCTGTAGGTGGAAACTTG	c7p61086129ES	TCCAAAGAAAACCTCAAATCTATC
chr7	62069701	62070014	62432266	62432579	+	20	313	3	noL1	COLO1N	0	0	"L1PA2,ALR/Alpha"				c7p62069857FS	TGAATCCAGAGAAAGGTTTAACTC	c7p62069857ES	AGAACTACAAATACCATTTGACCC
chr7	66247569	66247867	66610134	66610432	-	16	298	2	noL1	COLO1N	0	0	AluY	"Alu:dbRIP,Witherspoon"	TYW1		c7p66247718FS	ACAAAAACATATGCAGGAAAAATC	c7p66247718ES	TACTACTTGAAATACAGTGGGCAG
chr7	78911641	78912040	79073705	79074104	+	12	399	2	noL1	COLO1N	0	0	L1PA4		MAGI2		c7p78911840FS	TGTTCTGTTCCATTGGTCTATATC	c7p78911840ES	AAGAGCTATCTATGACAAACCCAC
chr7	79992564	79992694	80154628	80154758	-	27	130	2	L1PA5	COLO1N	0	0	ERV3-16A3_I-int		CD36		c7p79992629FS	TCTGATTTATTTTCCAGCCTTATG	c7p79992629ES	AATGTAAAGTGTAAAAGCCAGAGG
chr7	82760157	82760277	82922221	82922341	+	17	120	2	L1PA4	COLO1N	0	0	"AT_rich,L1PA4"				c7p82760217FS	TCATACTCTTTATTAGCCTCCCTG	c7p82760217ES	GCAGCACTATTCACAGTATCAAAG
chr7	84178354	84178610	84340418	84340674	+	14	256	3	L1PA2	COLO1N	0	0	"MLT1C,A-rich"				c7p84178482FS	ACTAATTAAGCATGTTCCATAGGC	c7p84178482ES	ATGATGAGTTCATGTCCTTTGTAG
chr7	84669174	84669302	84831238	84831366	-	11	128	2	L1PA2	COLO1N	0	0	"AluJb,AT_rich"				c7p84669238FS	CTCAGTTAAGAGTGGTTTTGTGTG	c7p84669238ES	CAAATGTCCAACAATGATAGACTG
chr7	85586540	85586943	85748604	85749007	+	12	403	5	noL1	COLO1N	0	0	"AluJr,L1ME1,(TAA)n"				c7p85586741FS	ACATAGTTACTTTTCCCAGTGCTC	c7p85586741ES	TGAATTGAACATCAGAGGAATATG
chr7	86787597	86787784	86949661	86949848	+	10	187	2	noL1	COLO1N	0	0	L1PA7				c7p86787690FS	GTCAAGTTTGTCAAAGATCAGATG	c7p86787690ES	TGACAAAAACCACATGATTATCTC
chr7	87080498	87080772	87242562	87242836	-	11	274	2	noL1	COLO1N	0	0	"L1PB,L1PA16"		"ABCB1,mdr1"		c7p87080635FS	CATCTATGATTTCTTTCTGCAGTG	c7p87080635ES	ATGCTGAGGTTAAGGTTATGAAAG
chr7	88744185	88744539	88906249	88906603	-	23	354	3	L1PA3	COLO1N	0	0	(TA)n		ZNF804B		c7p88744362FS	TGTAATTGAGTTTTGCTTTCTTTG	c7p88744362ES	CTCACTCATAGGTGGGAATTAAAC
chr7	89256055	89256294	89418119	89418358	-	19	239	4	L1PA2	COLO1N	0	0	"L1PA2,L1PA15,L1PA7"				c7p89256174FS	GTGTTGATTTGCATTTTTCTAATG	c7p89256174ES	CAAATGTCCAACAGTGATAGATTG
chr7	91370677	91370982	91532741	91533046	-	11	305	2	L1PA2	COLO1N	0	0	L1PA2				c7p91370829FS	GTGAGTGTCCTATTCCTCTCAATC	c7p91370829ES	TCATTCTCAGTAAACTATCGCAAG
chr7	96154984	96155135	96317048	96317199	+	10	151	2	L1PA3	COLO1N	0	0	"L1PA3,MIRc"		SHFM1		c7p96155059FS	ATTTTCAGGTACTACATAGCAGGC	c7p96155059ES	ATAGACTGGATTAAGAAAACGTGG
chr7	109277333	109277817	109490097	109490581	+	13	484	2	noL1	COLO1N	0	0	"AluSz,MIRb"				c7p109277575FS	AGTTTAAGACAGAAAGATTCCAGG	c7p109277575ES	ATTTCTCATTTACTGAACACCTCC
chr7	111019788	111020124	111232552	111232888	-	25	336	4	noL1	COLO1N	0	0	"MIR,L3"	"LINE:Ewing,Iskow"			c7p111019956FS	AGTTCTCACTTGTTGAAGGCTTAC	c7p111019956ES	TTTTCCAAATAGAAAGAAAGTCAAC
chr7	124631868	124632020	124844632	124844784	-	14	152	3	noL1	COLO1N	0	0	L1M5				c7p124631944FS	TTTCTGGAATCCCTATCTATTCTG	c7p124631944ES	GTTTAGGAGATGCAGCTAAAAGAG
chr7	127725372	127725496	127938136	127938260	+	12	124	2	L1PA3	COLO1N	0	0	"L1PA3,MER11A"				c7p127725434FS	TATATTTAAAGAAGAGCAATGGGG	c7p127725434ES	ATGCTGCTATAAAGACACACACAC
chr7	132669533	132669881	133018993	133019341	-	12	348	4	L1PA13	COLO1N	0	0	"L1PA13,L1MC4a"		EXOC4		c7p132669707FS	AACTTGAGTACAATGTTTGTGTGC	c7p132669707ES	TGAGAACACATGGACATATAGAGG
chr7	140878749	140879449	141232280	141232980	+	26	700	2	noL1	COLO1N	0	0	AluSq2				c7p140879099FS	ACCATTCATTCAAGCATCTACTG	c7p140879099ES	TTGATAGCTCATTTCTTTTCATTG
chr7	145121578	145121870	145490645	145490937	+	23	292	3	L1PA3	COLO1N	0	0	"L1PA3,ERVL-E-int"				c7p145121724FS	AAGCATGGACATTACTTAAAAACC	c7p145121724ES	ATAGACTGGTTAAGAAAATGTGGC
chr8	5583391	5583549	5595983	5596141	-	14	158	2	L1PA7	COLO1N	0	0	L1PA7				c8p5583470FS	GACGCTAAAGACAAAGTAGGTTTC	c8p5583470ES	ACTGTTCACAATAGCAAAGACTTG
chr8	9713087	9713436	9675677	9676026	+	675	349	7	L1PA7	COLO1N	0	0	"L1PA3,L1PA7"				c8p9713261FS	AATGTATATTCTGTTGATTTGGGG	c8p9713261ES	ATTGTAAAGACCATCGACACTATG
chr8	24469245	24469368	24413355	24413478	-	16	123	3	L1PA4	COLO1N	0	0	MLT1A				c8p24469306FS	CCATTTCCAGTCATTATTTTTCTC	c8p24469306ES	TATACACCGTGGAATACTATGCAG
chr8	31491040	31491478	31371498	31371936	-	11	438	3	L1PA6	COLO1N	0	0	L1PA6				c8p31491259FS	TATTGTTCTAGCCTGTCAATATGC	c8p31491259ES	AACTAGAATTACCATTTGACCCAG
chr8	31559307	31559758	31439765	31440216	-	31	451	3	noL1	COLO1N	0	0	L1MCa				c8p31559532FS	ATTTGGTGTATTTAGACCAGTTTG	c8p31559532ES	AACTTCAGAAAACCAAAAACAGAG
chr8	33675157	33675309	33555615	33555767	-	12	152	3	L1PA4	COLO1N	0	0	"Tigger1,L1PA4"				c8p33675233FS	ATTGTTATGTCTCAGGGAATAAGG	c8p33675233ES	ACAGACTGGATTAAGAAAATGTGG
chr8	36752367	36752477	36633209	36633319	+	10	110	3	L1PA5	COLO1N	0	0					c8p36752422FS	TCTACCTCTCCTGTTTGGAATTAG	c8p36752422ES	AGGATGAGTTCATGTCCTTTGTAG
chr8	38704653	38704965	38585496	38585808	+	25	312	4	noL1	COLO1N	0	0	"(A)n,AluJo"				c8p38704809FS	AAAGGATGTTTTGTAACTTTCAGC	c8p38704809ES	GATTACAGGAGTGAGCCACAG
chr8	40697330	40697665	40578173	40578508	-	17	335	3	L1PA2	COLO1N	0	0	"(TTTG)n,L1PA2,AluSx1"		ZMAT4		c8p40697497FS	AGGTATTAGTCTGTGGTCAGAAGG	c8p40697497ES	TCATTCTCAGTAAACTATCGCAAG
chr8	51162642	51162945	51000089	51000392	-	87	303	3	L1PA2	COLO1N	0	0	L1PA2		SNTG1		c8p51162793FS	AAAGACTCAAGAATCTCTGGTTTG	c8p51162793ES	TGGAAATCATCATTCTCAGTAAAC
chr8	53938540	53938844	53775987	53776291	-	14	304	2	noL1	COLO1N	0	0	L1PA15				c8p53938692FS	TGGTCTTTTCTTTCCATATTTAGC	c8p53938692ES	AGATCATTGAGATTCAGGAGAAAG
chr8	55652975	55653121	55490422	55490568	-	30	146	5	L1PA3	COLO1N	0	0	L1PA3		RP1		c8p55653048FS	CCACTTCTTAAGTCGTGTGTTATG	c8p55653048ES	GTGCACCTATAGTCCCAGATATTC
chr8	59803811	59804242	59641257	59641688	+	18	431	2	noL1	COLO1N	0	0	L1PA4				c8p59804026FS	CTTAGGAGTGACTTGACAATGTGG	c8p59804026ES	TATGCAAATCAACAAACATAATCC
chr8	60773685	60773952	60611131	60611398	+	13	267	4	L1PA4	COLO1N	0	0	L1PA4				c8p60773818FS	TTTCATAACACTTGACAAAACCAG	c8p60773818ES	TCAACATAAGAATTTAGGGGAGAC
chr8	62923002	62923111	62760448	62760557	-	10	109	3	noL1	COLO1N	0	0	L1PA3				c8p62923056FS	ATTGATTGGAATAGTTTCAGAAGG	c8p62923056ES	ACCACATAGTTGGAAGTAAAGCTC
chr8	63881596	63881961	63719042	63719407	+	19	365	5	noL1	COLO1N	0	0	"L1PA3,(TAAAA)n"		NKAIN3		c8p63881778FS	TTGTTCATCACTACGTTTCATCAC	c8p63881778ES	GAAGATGTGGAGAAATAGGAACAC
chr8	68667573	68667780	68505019	68505226	-	12	207	3	noL1	COLO1N	0	0	L1PA3		CPA6		c8p68667676FS	ATTGGAATAGTTTCAGAAGGAATG	c8p68667676ES	ACCACATAGTTGGAAGTAAAGCTC
chr8	70425800	70426166	70263246	70263612	-	25	366	7	L1PA3	COLO1N	0	0	MER45B				c8p70425983FS	TAATATAGGGACGTGACATGAAAG	c8p70425983ES	ATTCTCACTCATAGATGGGAATTG
chr8	70764892	70765086	70602338	70602532	-	17	194	15	noL1	COLO1N	0	0	LSU-rRNA_Hsa		"SLCO5A1,OATPRP4"		c8p70764989FS	AGTTTGAAGTCAGGTAGTGTGATG	c8p70764989ES	GTGTCTTTAGATAGTTGACCAGCC
chr8	78924617	78924951	78762062	78762396	-	26	334	3	L1PA2	COLO1N	0	0	"L1PA2,L1MC1"				c8p78924784FS	ATATAAATGGGATTGTGTTTCAGC	c8p78924784ES	ATGAGTGAGAATATGTGGTGTTTG
chr8	83398437	83398560	83235882	83236005	+	36	123	3	L1PA4	COLO1N	0	0					c8p83398498FS	TCAAAGGAAACAGTTAACAGAGTG	c8p83398498ES	AACACCACATGTTCTCACTCATAG
chr8	89613270	89613459	89544154	89544343	-	14	189	5	L1PA3	COLO1N	0	0	L1PA3				c8p89613364FS	TGAACTGAATTGCAGTAGAATCTC	c8p89613364ES	CAAATGTCCAACAATGATAGACTG
chr8	113704735	113704912	113635559	113635736	-	12	177	2	L1PA2	COLO1N	0	0			CSMD3		c8p113704823FS	TAACTATGTTTTTCAACTTGCCAC	c8p113704823ES	CTGTGCTAGGTGATGGTGATATAG
chr8	121270498	121270878	121201317	121201697	-	16	380	4	L1PA3	COLO1N	0	0	AT_rich		COL14A1		c8p121270688FS	AATAAAAGCTTATGCACTCATTCC	c8p121270688ES	TCTCAGTAAACTATCGCAAGGAC
chr8	137094184	137094405	137025002	137025223	-	12	221	4	noL1	COLO1N	0	0	(T)n				c8p137094294FS	CGTTAAACACTTACGATATTGCAG	c8p137094294ES	CAAAACCTAAATCAGAGAAGGAAG
chr8	138116246	138116434	138047064	138047252	-	13	188	3	L1PA3	COLO1N	0	0	"L1PA3,MLT1C"				c8p138116340FS	CCAAATATTCCTATGTTGAAATCC	c8p138116340ES	TAAACTGGATTAAGAAAATGTGGC
chr9	3977648	3978221	3987648	3988221	+	21	573	5	noL1	COLO1N	0	0	"L1MD2,AluSq,L1MA9"		GLIS3		c9p3977934FS	TGTATCTTCTTCCTTCTTGATGTG	c9p3977934ES	ACTAAAAATGCAAAAATTAGCTGG
chr9	4907782	4908154	4917782	4918154	-	13	372	3	noL1	COLO1N	0	0	L1PA4				c9p4907968FS	TTTTTACATCAATGTTCATCAAGG	c9p4907968ES	ATGAAGCCAGAAATAAAGATGTTC
chr9	9358486	9358813	9368486	9368813	-	16	327	3	L1PA4	COLO1N	0	0	L1PA4		PTPRD		c9p9358649FS	CACTTAACATTATTGGGCCTTATC	c9p9358649ES	AGGATGAGTTCATGTCCTTTGTAG
chr9	11279049	11279335	11289049	11289335	+	13	286	2	L1PA4	COLO1N	0	0					c9p11279192FS	CTTTCTTTTCTTTCTTTCTCCTCC	c9p11279192ES	AGGATGAGTTCATGTCCTTTGTAG
chr9	11708525	11708727	11718525	11718727	-	10	202	3	L1PA4	COLO1N	0	0	"L1MDa,L1PA4"				c9p11708626FS	ATTAAGACATCATTTCTCTCTGGC	c9p11708626ES	CAAATGTCCAACAATGATAGACTG
chr9	22733525	22734043	22743525	22744043	+	18	518	2	L1PA7	COLO1N	0	0	"L1ME2,L1PA7"		AX747623		c9p22733784FS	AGCATGACCCTTATTATAGCACAG	c9p22733784ES	GTTGGTGGGAGTGTAAATTAGTTC
chr9	24095043	24095418	24105043	24105418	-	29	375	2	noL1	COLO1N	0	0	"(CA)n,L1MA9"				c9p24095230FS	TTTTTGTATTCTGGTAGAGATGGG	c9p24095230ES	CAAGTAATGAGGAGAATGGAAGAG
chr9	25173133	25173680	25183133	25183680	+	11	547	2	L1PA16	COLO1N	0	0	"L1M3c,AluJb"				c9p25173406FS	TTGGCTATTTGATAAGTTTTGTTG	c9p25173406ES	TTAAGTTGTTTCTGTTTGCAGATG
chr9	28409556	28409977	28419556	28419977	+	23	421	2	noL1	COLO1N	0	0	AT_rich		LINGO2		c9p28409766FS	AATGCAGATTTATTTTTACGTTTTG	c9p28409766ES	AATACTATTGCCATTTTCCAGATG
chr9	33414360	33414804	33424360	33424804	-	16	444	3	noL1	COLO1N	0	0	"SVA_E,(A)n,AluY,MER58A"		SUGT1P		c9p33414582FS	ATCCTGTTGATCTGTGACCTTATC	c9p33414582ES	AACACAGTGAAACCCTGTCTCTAC
chr9	67010489	67010675	67320669	67320855	-	11	186	4	noL1	COLO1N	0	0	ALR/Alpha	Alu:Hormozdiari			c9p67010582FS	TATTTGGATAGCTTTGAGGTTTTC	c9p67010582ES	AAGTTTCAATATCAAGAATCCTGC
chr9	72003718	72003839	72813898	72814019	-	11	121	2	L1PA2	COLO1N	0	0	L1PA2		"AK124136,MAMDC2"		c9p72003778FS	AACAATTTCCAGAGAAAGAAACAC	c9p72003778ES	CAAATGTCCAACAATGATAGACTG
chr9	77165374	77165546	77975554	77975726	-	11	172	2	noL1	COLO1N	0	0	"LTR49,AluY"				c9p77165460FS	AATTTGCATCTGTAGAGAATCTGC	c9p77165460ES	TTTTTAGTAGAGATGGGGTTTCAC
chr9	82325860	82326458	83136040	83136638	-	12	598	2	noL1	COLO1N	0	0	AT_rich				c9p82326159FS	AGTTGCTGCTTCTAGTCTCAAATC	c9p82326159ES	GAAAATTGGATAGGAAGTCTTCTG
chr9	96836967	96837143	97797146	97797322	-	38	176	3	L1PA6	COLO1N	0	0	L1PA6		C9orf3		c9p96837055FS	AGATGAGAGGATTTGAGACTATGC	c9p96837055ES	AGATTTTTCAAGATGTTCCAACTG
chr9	118867845	118868176	119828024	119828355	-	57	331	8	L1PA2	COLO1N	0	0	"L1PA2,MIRb"		ASTN2		c9p118868010FS	TTTTTAGTTACCTGTCTCTCTCCC	c9p118868010ES	TTTGTAGGGACATGTATGAAATTG
chr9	121417643	121417811	122377822	122377990	+	11	168	2	noL1	COLO1N	0	0	MIRc				c9p121417727FS	GACACTTGAATTGCAGTCTTGTAG	c9p121417727ES	ATGCCTGGGTATAAAGAAATAGTG
chr9	124225638	124225871	125185817	125186050	+	30	233	3	noL1	COLO1N	0	0	L2c				c9p124225754FS	ATACCATTATCAAAAGCATCTTCC	c9p124225754ES	AGGTTATGCTTTCTTCATCAATTC
chr9	134395828	134395951	135406007	135406130	+	1668	123	4	noL1	COLO1N	0	0	L1MD2		FLJ46082		c9p134395889FS	TAATAAACCAAAAGAAGCAAATGG	c9p134395889ES	GAGTCTCTCTCTCTCTGTCACCC
chr9	136371184	136371441	137231363	137231620	+	372	257	4	noL1	COLO1N	0	0	(TG)n		"FLJ00318,RXRA"		c9p136371312FS	AGATACAGGCTCAGACATGGAC	c9p136371312ES	CTGGAGAGCTCTTGGCAGAAAG
chr9	136611237	136611387	137471416	137471566	+	20	150	7	noL1	COLO1N	0	0	"GA-rich,AluJr"				c9p136611312FS	AGAACAATCCAATTACTGATAGGG	c9p136611312ES	GATTTAGAAAGGTTGAAAGCAAAG
chrX	5205415	5206030	5195415	5196030	+	66	615	3	noL1	COLO1N	0	0	"AT_rich,L3"				cXp5205722FS	TCCAAGTTATGAAAGATGTTTGTG	cXp5205722ES	CTAATTGAACACTGTTTGGCTATG
chrX	10903279	10903466	10993358	10993545	-	18	187	3	L1PA3	COLO1N	0	0			"AY660578,AY660577"		cXp10903372FS	TTGCTGAAAATACTGGATCTTATG	cXp10903372ES	TCATTCTCAGTAAACTATCGCAAG
chrX	13611267	13611780	13701346	13701859	+	11	513	3	L1PA3	COLO1N	0	0	"L1PA3,(A)n,L1MEg2"				cXp13611523FS	CTCTTAGCAAACCAGGAATAGAAG	cXp13611523ES	CAAATGTCCAACAATGATAGACTG
chrX	14621037	14621269	14711116	14711348	+	73	232	6	L1PA3	COLO1N	0	0	"L1MEe,L1PA3"		GLRA2		cXp14621153FS	CCTCACTATGAGTGTGAGTTTGTC	cXp14621153ES	AAGAAACACTATCCTGGCTTACTG
chrX	23353203	23353382	23443282	23443461	-	11	179	2	noL1	COLO1N	0	0	L1PA4				cXp23353292FS	TTGAATCTATAAATTACCTTGGGC	cXp23353292ES	CAAAATCCTCAATAAAATACTGGC
chrX	25657344	25657514	25747423	25747593	+	12	170	2	noL1	COLO1N	0	0	L1PREC2				cXp25657429FS	AAACCCCGTCTGTACTAAAAATAC	cXp25657429ES	TCCATCTTCCTATTTTTCTGAATC
chrX	27140841	27141013	27230920	27231092	-	13	172	2	noL1	COLO1N	0	0	MLT1F		BC024027		cXp27140927FS	TTTTGCACTCATATAGCGTTCTAC	cXp27140927ES	ATAGTCCAAGACAGTTTAGGGATG
chrX	32171779	32172331	32261858	32262410	-	17	552	3	L1PA2	COLO1N	0	0	"L1PA2,MER63D"		DMD		cXp32172055FS	CAAACATGAAGTTAGCACTACACC	cXp32172055ES	GCAGCACTATTCACAATAACAAAG
chrX	35798680	35799046	35888759	35889125	-	16	366	2	noL1	COLO1N	0	0	"L1MB3,L1PA4"				cXp35798863FS	ATACCATTTTACTATCCTGCAAGC	cXp35798863ES	GCAACCTATGAAATGAGAGAAAAC
chrX	46781415	46781621	46896471	46896677	+	86	206	2	L1PA2	COLO1N	0	0	L1PA2		PHF16		cXp46781518FS	GGTTACCGTAATGGACACTTTTAC	cXp46781518ES	GGCATTATTCACAATAGCAAAGAC
chrX	46851514	46851752	46966570	46966808	+	70	238	2	noL1	COLO1N	0	0	"AluY,L1MEc"				cXp46851633FS	AAAATTAGCTGCATATGATGGTG	cXp46851633ES	GTAGAATGTGTGATTCTGAGCTTG
chrX	47685987	47686346	47801043	47801402	-	10	359	2	noL1	COLO1N	0	0	"MLT1F2,L1MC1,L1MC5"				cXp47686166FS	AAGTTATGAAAAGATTGTGGCTTC	cXp47686166ES	TTATTGGTTTGCCATCTGTATATC
chrX	48598330	48598474	48713386	48713530	+	27	144	3	noL1	COLO1N	0	0	Harlequin-int				cXp48598402FS	TTTATTCTGTTAGCAAAGCAGTTG	cXp48598402ES	GATTTCTGGATACTCTGATTTTGG
chrX	51785649	51785766	51768909	51769026	-	11	117	3	noL1	COLO1N	0	0	L1PA2				cXp51785707FS	TTTTAGAGTTTCCAGTTTTTCTGC	cXp51785707ES	TAGTCAATGAAAGGAGTGACAGAC
chrX	52013879	52014166	51997139	51997426	+	14	287	2	L1PA4	COLO1N	0	0	"L1MC1,L1PA4"				cXp52014022FS	CTATAAAGCTGCAGTAATCAGGAC	cXp52014022ES	GTTCTTACTCATAGGTGGGAATTG
chrX	52775000	52775114	52758275	52758389	-	14	114	3	L1PA4	COLO1N	0	0	L1PA4				cXp52775057FS	CATTCTCAGTAAGCTATCACAAGG	cXp52775057ES	CGTATGTTTATTGTGGCACTATTC
chrX	56395556	56396195	56378831	56379470	-	12	639	3	L1PA4	COLO1N	0	0	"L1PA2,L1PA4"				cXp56395875FS	TAGGTATATCTCCCAATGCTATCC	cXp56395875ES	AACTAGAAATACCATTTGACCCAG
chrX	57066925	57067118	57050200	57050393	-	10	193	2	L1PA6	COLO1N	0	0	"L1PA11,L1PA6"				cXp57067021FS	CTATTGGCCTATTTGTACCAGAAC	cXp57067021ES	ACTATTCACAACAGCAAAGACTTG
chrX	62996884	62997024	63080159	63080299	-	19	140	3	L1PA4	COLO1N	0	0	"L1MB4,L1PA4"				cXp62996954FS	ATAGCTCACTGTAGCCTTGAACTC	cXp62996954ES	CAAATGTCCAACAATGATAGACTG
chrX	63245223	63245389	63328498	63328664	-	18	166	2	L1PA3	COLO1N	0	0	"L1PA3,L1ME1"				cXp63245306FS	TCCTAGGCATTTCTTTGTAGATTC	cXp63245306ES	CAAATGTCCAACAATGATAGACTG
chrX	65471056	65471871	65554331	65555146	-	22	815	5	noL1	COLO1N	0	0	L1PA15				cXp65471463FS	TCATTGTTTCTGTTTATATGCTGG	cXp65471463ES	AAATTTATAGCACTAAATGCCCAC
chrX	70101597	70102304	70184872	70185579	+	115	707	2	L1PA3	COLO1N	0	0	"L1MA4,AluSc"				cXp70101950FS	AACTTTTCTCTCATTGGATTTACG	cXp70101950ES	AGAGAAAGTCGCTAGTCACAAGTC
chrX	74555920	74556453	74639195	74639728	+	11	533	3	L1PA7	COLO1N	0	0	L1PA4		ZDHHC15		cXp74556186FS	TATATCTCCTAATGCTATCCCTCC	cXp74556186ES	TACCATCAGAGTGAACAGACAATC
chrX	79438702	79438865	79552046	79552209	-	10	163	2	L1PA4	COLO1N	0	0	"L2a,AluSp,L1PA6"		CR627394		cXp79438783FS	AGCAAGAGATTAAAATGGAGTCAG	cXp79438783ES	AAAAGAGAAGAGAATCCATGTGAC
chrX	80100720	80101025	80214064	80214369	-	15	305	2	L1PA3	COLO1N	0	0	"PRIMA4-int,L1PA3"				cXp80100872FS	CTCCGAAAGCGTATCTACTATCTG	cXp80100872ES	AACTATGAGAACACATGGACACAG
chrX	81117668	81117989	81231012	81231333	-	10	321	2	L1PA2	COLO1N	0	0	"L1PA2,L1MC4"				cXp81117828FS	ATATTTCCTATGAACAGGGATGTG	cXp81117828ES	TCATTCTCAGTAAACTATCGCAAG
chrX	84984161	84984497	85097505	85097841	+	18	336	8	L1PA7	COLO1N	0	0	"(TAA)n,L1PA7"				cXp84984329FS	TGAGTTGTTTCTCTTTCTCATTTG	cXp84984329ES	TTCTCAGTAAACTATCGCAACAAC
chrX	85712677	85712952	85826021	85826296	-	12	275	4	L1PA10	COLO1N	0	0	L1M5		DACH2		cXp85712814FS	CTATGTAACAGACCTCACATCCTG	cXp85712814ES	AAGAATAAAAACCTTTCCTGTGTC
chrX	90502742	90502911	90616086	90616255	+	17	169	2	L1PA3	COLO1N	0	0	"MER4-int,L1PA3"				cXp90502826FS	TTCATATTCTTTCTTCTGAGGAGG	cXp90502826ES	TCATTCTCAGTAAACTATCGCAAG
chrX	93580367	93580547	93693711	93693891	-	14	180	2	L1PA3	COLO1N	0	0	LTR9				cXp93580457FS	ACAATGTGGATAAACCTTGAAAAC	cXp93580457ES	TCATTCTCAGTAAACTATCGCAAG
chrX	95163001	95163185	95276345	95276529	+	21	184	3	noL1	COLO1N	0	0	"L1PA3,L1MB2"				cXp95163093FS	AATTAAGGGTGTAGAATCTTGTCG	cXp95163093ES	AACTAGAAATACCATTTGACCCAG
chrX	103954275	103954470	104067619	104067814	-	30	195	4	L1PA2	COLO1N	0	0	"L1PA2,L1PA7"		IL1RAPL2		cXp103954372FS	TGAAGTCAGTTAGTGTTATGCCTC	cXp103954372ES	TAGACTGGATTAAGAAAATGTGGC
chrX	104174659	104174771	104288003	104288115	+	26	112	2	L1PA3	COLO1N	0	0	Charlie17a		IL1RAPL2		cXp104174715FS	AAGAACAACCTAAATATGGACCAG	cXp104174715ES	TCATTCTCAGTAAACTATCGCAAG
chrX	112467573	112467750	112580917	112581094	-	13	177	3	L1PA2	COLO1N	0	0	"L1PA2,L1PA12"				cXp112467661FS	ATGAAGCCTACTTTATAGTGGTGG	cXp112467661ES	TCATTCTCAGTAAACTATCGCAAG
chrX	113779091	113779252	113872835	113872996	-	18	161	3	L1PA2	COLO1N	0	0	(TTTA)n		HTR2C		cXp113779171FS	TTAAAGAATTTCAGAAACAGGGAG	cXp113779171ES	CCAACAATGATAGACTGGATTAAG
chrX	118824516	118824709	118940488	118940681	+	38	193	3	L1PA2	COLO1N	0	0					cXp118824612FS	AAGAGCTGGTTCTAAAATCAAAAG	cXp118824612ES	TGGAAATCATCATTCTCAGTAAAC
chrX	120651665	120651878	120823984	120824197	-	20	213	3	L1PA3	COLO1N	0	0	L1MB5				cXp120651771FS	CTTAGGTATTGTGAGTAATGCTGC	cXp120651771ES	CTCACTCATAGGTGGGAATTTAAC
chrX	128950913	128951181	129123232	129123500	-	14	268	4	noL1	COLO1N	0	0	"AluSx1,AluY"		BCORL1		cXp128951047FS	ATATGACTATGATCGCAGAGGTG	cXp128951047ES	AAAGAGAGTTAAGTGAAGACCTGG
chrX	138172411	138172582	138344745	138344916	+	11	171	3	noL1	COLO1N	0	0	L1PA5				cXp138172496FS	ATTGGAATAGTTTCAGAAGGAATG	cXp138172496ES	GTTAGAAGTAAAGCACTCCTCAGC
chrY	4907153	4907469	4847153	4847469	+	18	316	3	noL1	COLO1N	0	0	L1PA3				cYp4907311FS	CATTTATCTACTTCATGGGTCTCC	cYp4907311ES	AACTAGAAATACCATTTGACCCAG
chrY	12328614	12328735	13818614	13818735	-	17	121	3	noL1	COLO1N	0	0	(GAATG)n	LINE:Iskow			cYp12328674FS	ATAGAATTGAATGGAATTGAAAGG	cYp12328674ES	CATTTGGGTCCATAACATTTG
chrY	13800247	13800435	15290853	15291041	-	54	188	3	L1PA2	COLO1N	0	0	"MER4-int,L1PA2"				cYp13800341FS	TAGAAGGTGATTTTATTTTCAGCC	cYp13800341ES	TAGTCTGGATTAAGAAAATGTGGC
chrY	19631275	19631685	21171887	21172297	+	27	410	7	L1PA2	COLO1N	0	0	"L1PA2,L1MC4a"		TTY14		cYp19631480FS	TTGTTATGTGTCAGATAGCTAGGG	cYp19631480ES	AACTAGAAATACCATTTGACCCAG
chrY	19729912	19730946	21270524	21271558	-	13	1034	4	noL1	COLO1N	0	0	"L1PA3,L1PA5,(TTTAA)n"				cYp19730429FS	TCCATGGTTTATGGTATTTATGTG	cYp19730429ES	ATTAGAAAGTCAGGAAACAACAGG
chrY	21394265	21394592	22984877	22985204	-	77	327	3	noL1	COLO1N	0	0	L1PA4				cYp21394428FS	GAGTTCACTCATGATTTGTCTCTG	cYp21394428ES	TTCTACCAGAGGTACTAGGAGGAG
chrY	22844979	22845376	24435591	24435988	+	18	397	4	L1PA2	COLO1N	0	0	"(TAAA)n,L1PA2"				cYp22845177FS	AAACAAAACTTTAGCCAGTACCAG	cYp22845177ES	TCATTCTCAGTAAACTATCGCAAG
chrY	57442602	57442736	59033214	59033348	-	52	134	4	L1PA2	COLO1N	0	0	"L1PA2,(TTG)n,AluSc"				cYp57442669FS	GCAACATAACAGGCACTATAAATG	cYp57442669ES	TATGTTTATCGCGACATTATTCAC
chr1	805265	805374	815402	815511	-	23	109	3	noL1	"COLO2T,COLO2N"	27	67	L1M3				c1p805319FS	GCTATAGATAACAATGGCATCTTG	c1p805319ES	AAATACCAGCAATTCAAATTTAGC
chr1	10345099	10345213	10422512	10422626	+	38	114	7	noL1	"COLO2T,COLO2N"	63	73	"AluJb,L1ME3E"		KIF1B		c1p10345156FS	ACTTCAGGCATACACCACTATACC	c1p10345156ES	GGAAGGAAGGAATATTACATTGTG
chr1	12798462	12798836	12875875	12876249	-	4540	374	19	L1PA4	"COLO2T,COLO2N"	8243	427	L1PA4	"LINE:dbRIP,Ewing"			c1p12798649FS	CATAAAATGAGTTAGGGAGGATTC	c1p12798649ES	ATAAAAGAAACTCACTCAAAACCG
chr1	14456989	14457621	14584402	14585034	+	225750	632	86	L1HS	"COLO2T,COLO2N"	127562	385	"L1HS,(A)n,AluY"				c1p14457305FS	TTAATATTCTGAAGCAAAGCAGC	c1p14457305ES	TAATGCTAGATGACACGTTAGTGG
chr1	19015049	19015173	19142462	19142586	-	11	124	3	L1PA3	"COLO2T,COLO2N"	8	135	"L1PA3,(TTA)n"				c1p19015111FS	ACATTTTAAACATGCAAATGAGAG	c1p19015111ES	AAATAAATACGACCCTTGGTTTTC
chr1	19831563	19831665	19958976	19959078	-	24	102	3	L1PA3	"COLO2T,COLO2N"	13	109			NBL1		c1p19831614FS	GTTAGAAACCAAGCTCTCTAGGTG	c1p19831614ES	AATAAAAATGTACTCTAGGCTGGG
chr1	21030614	21030749	21158027	21158162	-	25	135	4	L1PA2	"COLO2T,COLO2N"	10	135	L1PA2		"EIF4G3,HP1BP3"		c1p21030681FS	CTCCACTTCATTTTATTTACTGGG	c1p21030681ES	CAAATGTCCAACAATGATAGACTG
chr1	23477059	23477283	23604472	23604696	-	11	224	5	noL1	"COLO2T,COLO2N"	5	65	"AluJr,MLT1F1"				c1p23477171FS	TAGGAAAGTAGCCTCAAATTCATC	c1p23477171ES	ATTTTCAACCTTTTGACTGTTCAC
chr1	29180609	29181037	29308022	29308450	-	14	428	2	L1PA4	"COLO2T,COLO2N"	49	65	"L1PA4,Ricksha_c,Ricksha,(TTTTTA)n"		EPB41		c1p29180823FS	AGCACCATGTATAAAATGAATGTG	c1p29180823ES	AACCATCATTCTCAGCAAACTATC
chr1	29184874	29185003	29312287	29312416	-	562	129	11	L1HS	"COLO2T,COLO2N"	465	235	"L1HS,HY3,AT_rich"		EPB41		c1p29184938FS	GAAAGACATTTTAGCTGGAGAGAG	c1p29184938ES	CAGCATTTACATTGTCTTCTCATC
chr1	29610394	29611031	29737807	29738444	+	36	637	2	noL1	"COLO2T,COLO2N"	153	65	AluY				c1p29610712FS	ACTAGGTGAGAGCAGAACAGAGAG	c1p29610712ES	TTTCGATAAACAGCATCCTCTTAG
chr1	30814138	30814607	31041551	31042020	+	2433	469	16	L1HS	"COLO2T,COLO2N"	2895	361	"(TAAA)n,L1HS,MER65-int"	LINE:dbRIP			c1p30814372FS	CTGCAAAAATTGAACAAGTAACAG	c1p30814372ES	TCATTCTCAGTAAACTATCGCAAG
chr1	31776734	31776950	32004147	32004363	-	1955	216	16	noL1	"COLO2T,COLO2N"	1201	171	"Charlie10,MIR"				c1p31776842FS	CTATACCTACAAAAAGAAGCTCGG	c1p31776842ES	CTGTAGTCCCAGCTACTAGAGAGG
chr1	32859980	32860170	33087393	33087583	+	13	190	5	noL1	"COLO2T,COLO2N"	33	72			"ZBTB8OS,ARCH"	ZBTB8OS.L	c1p32860075FS	GTGTGTCACATTTTCTTTATCCAG	c1p32860075ES	TCTTAACCAACTTGGAAGAAAAAC
chr1	34068255	34068433	34295668	34295846	+	19	178	2	noL1	"COLO2T,COLO2N"	16	65	L1PA3		CSMD2		c1p34068344FS	TTTTAGAGTTTCCAGTTTTTCTGC	c1p34068344ES	GAGTTCCCTTTCATGGTCAAG
chr1	34803833	34804306	35031246	35031719	-	26010	473	25	L1HS	"COLO2T,COLO2N"	22136	491	"L2a,L1HS"				c1p34804069FS	ATTTTATGCATGAAGAAACTGAGG	c1p34804069ES	TCATTCTCAGTAAACTATCGCAAG
chr1	35722774	35723056	35950187	35950469	-	2246	282	19	L1HS	"COLO2T,COLO2N"	1911	282	"(TA)n,L1HS,L1ME1"		KIAA0319L		c1p35722915FS	GTTTATGCCTAAGTGTTTCATGTC	c1p35722915ES	ATAGGCCCAGCTATTAGATTTAGC
chr1	37005024	37005445	37232437	37232858	-	13	421	4	L1PA3	"COLO2T,COLO2N"	3	89	"L1PA3,MIR,L1M4"				c1p37005234FS	AAAAACTCTACTGTGAGAGGAAGC	c1p37005234ES	TCATTCTCAGTAAACTATCGCAAG
chr1	39210433	39210746	39437846	39438159	-	10	313	3	noL1	"COLO2T,COLO2N"	1	65	Tigger2				c1p39210589FS	CTGTAATCCCAGCACTTTAGGAG	c1p39210589ES	TATTGTTTTGAGATGGAGTTTCAC
chr1	41446623	41447131	41674036	41674544	+	37360	508	83	L1HS	"COLO2T,COLO2N"	94629	622	"L1HS,L1PA6"		SCMH1		c1p41446877FS	AGGCATTTTGGTAGTTTGTATTTC	c1p41446877ES	TCATTCTCAGTAAACTATCGCAAG
chr1	41790350	41790452	42017763	42017865	-	17	102	3	L1PA3	"COLO2T,COLO2N"	28	102	L1PA6		"KIAA1555,HIVEP3"		c1p41790401FS	CTGATGGTAGTTTGTTTTTCTGTG	c1p41790401ES	TACACTATGGAATACTATGCAGCC
chr1	42092178	42092840	42319591	42320253	-	333164	662	96	L1HS	"COLO2T,COLO2N"	248157	447	"L1HS,(TC)n"		"KRC,HIVEP3"		c1p42092509FS	TGTAAATGATGATGAATGTGTGAG	c1p42092509ES	GAATATCACACTCTGGGGACTG
chr1	42256568	42256909	42483981	42484322	+	18728	341	18	noL1	"COLO2T,COLO2N"	10411	350	"L1ME3A,MER34B"	"LINE:Ewing,Iskow"	KRC		c1p42256738FS	CAAATGAAAAGATTTTAGGTTTCC	c1p42256738ES	GTAAGCCATTTGAACATTCTCTG
chr1	44508715	44509093	44736128	44736506	-	2682	378	9	noL1	"COLO2T,COLO2N"	2837	378			"ERI3,PRNPIP"		c1p44508904FS	CCTAGCTCTGTGGATTAAGAGAAG	c1p44508904ES	AGTGGTACAGTAGCTCCAGAAAAC
chr1	44617731	44617953	44845144	44845366	-	10	222	2	L1PA2	"COLO2T,COLO2N"	19	268	MamRep1879				c1p44617842FS	CTCACTACTGTGCAGATTCAATTC	c1p44617842ES	AAGTCACCTAGCTGGTTAATGATG
chr1	45149794	45149994	45377207	45377407	-	14	200	2	L1PA3	COLO2T	0	0	L1PA3		EIF2B3		c1p45149894FS	ATTAGCTTTTAACCAGCATCTCAC	c1p45149894ES	TCATTCTCAGTAAACTATCGCAAG
chr1	46492539	46492901	46719952	46720314	-	28	362	2	noL1	"COLO2T,COLO2N"	31	362	"AluJr,ORSL,L2c"		"RAD54L,C1orf190"		c1p46492720FS	GGCACATTTTTGTGTTTTTAGTAG	c1p46492720ES	CTAATGAGCTCTTTTCCCTCTG
chr1	46969796	46969898	47197209	47197311	+	14	102	5	L1PA7	"COLO2T,COLO2N"	91	107	"L1PA7,L1PA6"				c1p46969847FS	AACTTGTTATTGGTCTATTCAGGG	c1p46969847ES	ATGCAAAAGAATGGAAATCATAAC
chr1	48332540	48333119	48559953	48560532	-	82	579	8	L1PA3	"COLO2T,COLO2N"	131	579	"L1PA3,MIR3"				c1p48332829FS	TTTAACTGTGCAACACAAATCAAC	c1p48332829ES	CAAATGTCCAACAATGATAGACTG
chr1	48394419	48394645	48621832	48622058	+	48	226	6	L1PA2	"COLO2T,COLO2N"	31	277	L1MA4A				c1p48394532FS	AGGTCTGGAATTAGAAAGTGTGAG	c1p48394532ES	TCATTCTCAGTAAACTATCGCAAG
chr1	49250302	49250697	49477715	49478110	+	192	395	14	L1PA3	"COLO2T,COLO2N"	1050	326	"L1PA3,(CAGAGA)n,MIRb"		AGBL4		c1p49250499FS	TATTTTCTAGAGCTATGGGTTTGG	c1p49250499ES	TCATTCTCAGTAAACTATCGCAAG
chr1	49992473	49992602	50219886	50220015	-	1458	129	18	L1PA4	"COLO2T,COLO2N"	4135	125	"L1P2,L1PA4"		AGBL4		c1p49992537FS	TCAGTCTCTGATATCCTTTCTTCC	c1p49992537ES	AGACTTAAATGTTCCTGCTAATGG
chr1	50112883	50113367	50340296	50340780	-	385	484	13	L1PA3	"COLO2T,COLO2N"	343	256	L1PA3		AGBL4		c1p50113125FS	TTAAAAGGGAAAGTGGCTATAATC	c1p50113125ES	TGGGAGATATACCTAATGCTAGATG
chr1	50996931	50997424	51224343	51224836	-	20	493	2	L1PA3	"COLO2T,COLO2N"	48	81	"L1PA3,AluY,(TTA)n,L1MEc"		FAF1		c1p50997177FS	TTTCTAGTGCTCTTCATTTCTCTG	c1p50997177ES	ACACTGCATATTCTCACTCATAGG
chr1	51156133	51156498	51383545	51383910	-	95605	365	36	L1HS	"COLO2T,COLO2N"	48876	378	"AluSz6,L1HS,L1ME2"		FAF1		c1p51156315FS	AAAGGAAAGGAAAAGAAAGAAAAC	c1p51156315ES	ATGATGAGTTCATGTCCTTTGTAG
chr1	51726682	51727423	51954094	51954835	+	122	741	6	noL1	"COLO2T,COLO2N"	115	70	"MIR,AluJo,MLT1J"		EPS15		c1p51727052FS	TTCCTTAACAAAAATAGCAGTTCC	c1p51727052ES	GAATTCTTTTGAAAGAGTCCATTG
chr1	56177613	56177979	56405025	56405391	-	95056	366	40	noL1	"COLO2T,COLO2N"	42038	378		"LINE:Ewing,Iskow"			c1p56177796FS	ATGTTCTGGATAAAGGAGGGTATG	c1p56177796ES	ACCCTGACTAATACAAAGCCATAG
chr1	56179871	56180153	56407283	56407565	-	105	282	4	L1PA3	"COLO2T,COLO2N"	177	219	"LTR67B,L1PA3"				c1p56180012FS	AGGTCTACTACTCAGTTTTCCAGC	c1p56180012ES	TCATTCTCAGTAAACTATCGCAAG
chr1	56607493	56607968	56834905	56835380	+	154256	475	80	L1HS	"COLO2T,COLO2N"	195164	475	"L1HS,L1MC4,MER41B"	LINE:dbRIP			c1p56607730FS	TGATTACAAAAAGGAGAAAAGACC	c1p56607730ES	TCATTCTCAGTAAACTATCGCAAG
chr1	58354199	58354513	58581611	58581925	+	62161	314	51	L1HS	"COLO2T,COLO2N"	24926	305	"L1HS,MLT1J"		DAB1		c1p58354356FS	AAACATTGAAGAAGATCAAGGAAG	c1p58354356ES	GATGAGTTCATATCCTTTGTAGGG
chr1	58463950	58464692	58691362	58692104	+	463	742	18	L1PA4	"COLO2T,COLO2N"	1226	734	"MIRc,L1PA4,MIR3"		DAB1		c1p58464321FS	TAACTTTGTGGCTTTGATAAAGTG	c1p58464321ES	GATGAGTTCATATCCTTTGTAGGG
chr1	59495168	59495353	59722580	59722765	+	24	185	2	L1PA4	"COLO2T,COLO2N"	27	185	"LTR33A,L1PA4"				c1p59495260FS	CTTGCTGTGATCTTCTTTGTATTG	c1p59495260ES	CAAATGTCCAACAATGATAGACTG
chr1	60517663	60518314	60745075	60745726	+	1446	651	24	L1HS	"COLO2T,COLO2N"	1783	426	"L2a,L1HS,(TG)n,L1M4"				c1p60517988FS	TTGATACCATTGTTTCATTCAGTC	c1p60517988ES	TAATGCTAGATGACACGTTAGTGG
chr1	60705684	60705861	60933096	60933273	+	127	177	3	L1PA2	"COLO2T,COLO2N"	73	171	"L2c,MIRb"				c1p60705772FS	GGTTCTTTATACCTTCAGTTGTGC	c1p60705772ES	TCATCATTCTCAGTAAACTATCGC
chr1	60749088	60749587	60976500	60976999	-	471	499	7	L1PA2	"COLO2T,COLO2N"	356	483	"L1PA2,AT_rich,L1PA4,L1ME3F"				c1p60749337FS	TTACAAATCCTTCCTTACTCCAAG	c1p60749337ES	AAAAACCAAACACCACATATTCTC
chr1	60884250	60884381	61111662	61111793	+	93	131	5	L1PA2	"COLO2T,COLO2N"	85	136	"L1M2,L1PA2"				c1p60884315FS	TAAAGTGAATAGGGTACTTCCACC	c1p60884315ES	CAAATGTCCAACAATGATAGACTG
chr1	62124406	62124530	62351818	62351942	+	173	124	4	L1PA3	"COLO2T,COLO2N"	186	134	"L2a,L1PA3"		"hINADL,INADL"		c1p62124468FS	TTTTTAGTAGAGATGAGGTTTCACC	c1p62124468ES	CAAATGTCCAACAATGATAGACTG
chr1	62372421	62372657	62599833	62600069	-	72	236	5	noL1	"COLO2T,COLO2N"	141	74	"FLAM_C,AluSq"		"hINADL,INADL"		c1p62372539FS	TTTTAGTAGAGACAGGGTTTCACC	c1p62372539ES	AGACACAGATTTCTCCAGCTTTG
chr1	62889667	62889796	63117079	63117208	+	27	129	6	L1PA5	"COLO2T,COLO2N"	4	67	L1PA5		DOCK7		c1p62889731FS	ATTAAGATAGAACCCAAAATTGCC	c1p62889731ES	TAGACTGGATTAAGAAAATGTGGC
chr1	63477676	63478034	63705088	63705446	-	213720	358	40	L1HS	"COLO2T,COLO2N"	189816	360	"L2a,L1HS,(TTTA)n,L2"		BC040309		c1p63477855FS	TCACAGGAAAAGAGGTTCTATCTC	c1p63477855ES	TCATTCTCAGTAAACTATCGCAAG
chr1	65681940	65682286	65909352	65909698	-	7484	346	13	L1HS	"COLO2T,COLO2N"	10893	349	"LTR49,L1HS"	LINE:dbRIP	"LEPROT,LEPR"		c1p65682113FS	ATTTTCCAAATTTTCAATAGGAAC	c1p65682113ES	CTTAACACCGCATATTCTCACTC
chr1	65796723	65796882	66024135	66024294	-	33	159	10	L1PA2	"COLO2T,COLO2N"	41	176	L1PA2		"LEPROT,LEPR"		c1p65796802FS	ACTTGCCCTTGAGTTTATTTTATG	c1p65796802ES	CAAATGTCCAACAATGATAGACTG
chr1	66016963	66017219	66244375	66244631	+	680	256	6	L1PA2	"COLO2T,COLO2N"	1175	326	"L1PA2,L1MA4,A-rich"				c1p66017091FS	ATCAGTCTATTACTCAAAGTGGGG	c1p66017091ES	CAAATGTCCAACAATGATAGACTG
chr1	67204108	67204271	67431520	67431683	-	17	163	3	L1PA5	"COLO2T,COLO2N"	68	183	L1MA2		MIER1		c1p67204189FS	GTACGTGAGATGTCTTGATACAGG	c1p67204189ES	CATCAAAAAGGAGGAGTTTATGTC
chr1	67316585	67317154	67543997	67544566	-	21409	569	24	L1HS	"COLO2T,COLO2N"	13622	529	"AluJb,L1HS"	LINE:Iskow			c1p67316869FS	AAAAATTTCCCTGTTATGCAGTAG	c1p67316869ES	TGGGAGATATACCTAATGCTAGATG
chr1	68919431	68919814	69146843	69147226	-	44	383	8	L1PA4	"COLO2T,COLO2N"	49	383	"L1MA8,L1PA4"				c1p68919622FS	ACATAGTGGTCAGTATATTATTTCTGC	c1p68919622ES	ATGATGAGTTCATGTCCTTTGTAG
chr1	68971947	68972663	69199359	69200075	-	1676581	716	137	L1HS	"COLO2T,COLO2N"	1711643	967	"L2a,L1HS,AT_rich"				c1p68972305FS	TTGTTGCAATAATATTTTACGTGG	c1p68972305ES	CAAATGTCCAACAATGATAGACTG
chr1	69167725	69168001	69395137	69395413	+	22	276	4	L1PA2	"COLO2T,COLO2N"	41	295	L1PA2				c1p69167863FS	AGCTAAAATGATTGCTTGGATAAG	c1p69167863ES	TCATCATTCTCAGTAAACTATCGC
chr1	70096033	70096745	70323445	70324157	+	36	712	2	noL1	"COLO2T,COLO2N"	39	712	"L1P1,L1PA5"		LRRC7		c1p70096389FS	AAGGAAAAAGAGAAAGAGACCTTC	c1p70096389ES	CCATACTCATGGATAGGAAGAATC
chr1	70143210	70143507	70370622	70370919	-	57	297	3	L1PA4	"COLO2T,COLO2N"	89	374	L1PA15		LRRC7		c1p70143358FS	AAAAATTTATTTTAGGTTCAGGGG	c1p70143358ES	TTTGTACAGACATGGATGAAACTG
chr1	71459551	71459653	71686963	71687065	+	12	102	3	L1PA3	"COLO2T,COLO2N"	6	65	L1PA3		BC054887		c1p71459602FS	AAAGCACCATAAAAAGGTTCATAG	c1p71459602ES	GACTGGATTAAGAAAATATGGCAC
chr1	71757944	71758332	71985356	71985744	+	3531	388	19	L1HS	"COLO2T,COLO2N"	5148	388	L1HS		NEGR1		c1p71758138FS	TTTACTAGGCAATTAGTCTGTGGC	c1p71758138ES	TCATTCTCAGTAAACTATCGCAAG
chr1	72037230	72037382	72264642	72264794	-	28	152	4	L1PA7	"COLO2T,COLO2N"	24	121	"L2c,L1PA7"		NEGR1		c1p72037306FS	AGATCTAGGATTCAAACTGAGCTG	c1p72037306ES	ACTGTTCACACTAGCAAAGACTTG
chr1	72132476	72132890	72359888	72360302	+	83	414	7	L1PA2	"COLO2T,COLO2N"	45	200	"L1PA2,MIRb"		NEGR1		c1p72132683FS	TATTCACAGGCATGATTATAGCAC	c1p72132683ES	TCATTCTCAGTAAACTATCGCAAG
chr1	72226787	72227212	72454199	72454624	+	15	425	5	noL1	"COLO2T,COLO2N"	29	423	"(A)n,AluYb9"		NEGR1		c1p72226999FS	CATTTAGTTTTTGCTCTTGCTTTC	c1p72226999ES	TGCTATGAAGAGTAAAGGAGGTTG
chr1	74450165	74450830	74677577	74678242	+	10	665	3	L1PA3	"COLO2T,COLO2N"	3	66	"L1PA3,L2"		TNNI3K		c1p74450497FS	CAATCTTCTAAATCTTTCCTTTGC	c1p74450497ES	TAATGCTAAATGACGAGTTAATGG
chr1	74683474	74683913	74910886	74911325	-	128	439	11	L1PA2	"COLO2T,COLO2N"	127	441	"L1P3,L1PA2,AluYa5"		TNNI3K		c1p74683693FS	TTTAATAAATTGTGCTGGGAGAAC	c1p74683693ES	GAAACCCCGTCTCTACTAAAAATAC
chr1	74756738	74757209	74984150	74984621	-	12862	471	43	L1HS	"COLO2T,COLO2N"	7638	529	"T-rich,L1HS"	LINE:dbRIP	TNNI3K		c1p74756973FS	TCCTATTTCCACATAGCCTCTTAC	c1p74756973ES	ACACCGCATATTCTCACTCATAG
chr1	74964736	74965497	75192148	75192909	-	55171	761	31	noL1	"COLO2T,COLO2N"	54763	505	"THE1B,THE1B-int"	"LINE:Ewing,Iskow"	"CRYZ,DKFZp686C16101"		c1p74965116FS	GTATGTTGGCACCTTTAAGCTATG	c1p74965116ES	ATAAATTGTACCCAGTCTCAGGTG
chr1	75498056	75498352	75725468	75725764	+	16	296	2	noL1	"COLO2T,COLO2N"	13	296	L1P2		SLC44A5		c1p75498204FS	GTGAAATGGGTCTCCTGAATATAG	c1p75498204ES	AGAGTGAAGAGAAATGAACAAAGC
chr1	77721217	77721322	77948629	77948734	+	16	105	7	noL1	"COLO2T,COLO2N"	7	104	(A)n		AK5		c1p77721269FS	TTAATTAAAAAGGCATGGTCAAAG	c1p77721269ES	TAAAAATACAAAAATTAGCGCAGC
chr1	78046067	78046465	78273479	78273877	-	625	398	8	L1HS	"COLO2T,COLO2N"	889	391	"L1HS,MLT1D,AluSx"		FAM73A		c1p78046266FS	CAACAAAATTAAAACAGCAGAAAG	c1p78046266ES	ATAATGGTCACCCAAAGATATCAG
chr1	78481360	78481877	78708772	78709289	-	5275	517	35	L1HS	"COLO2T,COLO2N"	8248	536	"L1HS,AT_rich,(T)n,MIRb"		"AX747165,BC015860"		c1p78481618FS	ACTTGTTTATTATCTGCTTCCCTG	c1p78481618ES	TCATTCTCAGTAAACTATCGCAAG
chr1	81177090	81177561	81404502	81404973	-	658	471	21	L1HS	"COLO2T,COLO2N"	616	446	"MSTD,L1HS,(GA)n,(T)n"				c1p81177325FS	AATCATGTTACATATCAACAGCAG	c1p81177325ES	TCATTCTCAGTAAACTATCGCAAG
chr1	82342123	82342369	82569535	82569781	-	91	246	2	L1PA2	"COLO2T,COLO2N"	35	246	"L1PBa,L1PA2"				c1p82342246FS	ATCTTTTAAGTGAAGCATTTAGGC	c1p82342246ES	TCATTCTCAGTAAACTATCGCAAG
chr1	82900008	82900447	83127420	83127859	+	30745	439	47	noL1	"COLO2T,COLO2N"	21702	441	"L1HS,MIR,A-rich"	LINE:dbRIP			c1p82900227FS	ACTGTTCAGCAAGGTCCTCTATAC	c1p82900227ES	GATGAGTTCATATCCTTTGTAGGG
chr1	84290367	84290608	84517779	84518020	-	693	241	13	L1HS	"COLO2T,COLO2N"	490	236	"T-rich,(T)n"				c1p84290487FS	TTTATTTTTCATAATTCTGGAGCG	c1p84290487ES	GATGAGTTCATATCCTTTGTAGGG
chr1	85665143	85665245	85892555	85892657	+	14	102	4	noL1	"COLO2T,COLO2N"	17	66	AluJo		DDAH1		c1p85665194FS	ACAGTTAGAGATCTGATGTTTTGC	c1p85665194ES	AAATTACCTGACATCTCAAAGGAG
chr1	85992773	85993306	86220185	86220718	+	712769	533	153	L1HS	"COLO2T,COLO2N"	670459	574	"L1HS,L1MB3"		COL24A1		c1p85993039FS	TGTCTTGGTTTTTATTTAACTGGG	c1p85993039ES	TAATGCTAGATGACACGTTAGTGG
chr1	86072357	86072582	86299769	86299994	+	88	225	10	L1PA4	"COLO2T,COLO2N"	35	213	"(GA)n,L1PA4"		COL24A1		c1p86072469FS	CACTCCTTAGCATCAGACATACAC	c1p86072469ES	TAGACTGGATTAAGAAAATGTGGC
chr1	86171314	86171864	86398726	86399276	+	58783	550	50	L1HS	"COLO2T,COLO2N"	36529	551	L1HS		COL24A1		c1p86171589FS	ATTGAAAATATAATTTTGCCCTTG	c1p86171589ES	ACACCGCATATTCTCACTCATAG
chr1	86514224	86514584	86741636	86741996	+	1747	360	9	L1HS	"COLO2T,COLO2N"	2096	432	"L1HS,L1M1"	LINE:dbRIP			c1p86514404FS	AACCAAATGAACTAAATAAGGCAC	c1p86514404ES	GATGAGTTCATATCCTTTGTAGGG
chr1	86916438	86917411	87143850	87144823	-	2503	973	20	L1HS	"COLO2T,COLO2N"	2952	281	"L1HS,L1P4,L1M5"				c1p86916924FS	GACAAGGATATCCATTCTATCCAC	c1p86916924ES	GTCTTTCTTCACATATCCTGGAAC
chr1	88050075	88050534	88277487	88277946	+	11	459	2	noL1	"COLO2T,COLO2N"	6	459	(CA)n				c1p88050304FS	GAATAGCTCCTTCTTCCTTCCTAC	c1p88050304ES	AAGTATAACTTGCTTGGATTCTGC
chr1	88586100	88586387	88813512	88813799	+	12	287	2	L1PA2	"COLO2T,COLO2N"	1	65	"L1PA2,AT_rich"	"Alu:Stewart,Witherspoon"			c1p88586243FS	AGTCTTCTCTATTTGTTGCATTCC	c1p88586243ES	CATATACACCATGGAATACTGTGC
chr1	89984761	89984992	90212173	90212404	-	63	231	2	L1PA2	"COLO2T,COLO2N"	156	66	L3				c1p89984876FS	AAGTGGCAATTTCAAAACTTAAAC	c1p89984876ES	AATGCTAGATGACAAGTTAGTGGG
chr1	91600130	91600668	91827542	91828080	+	46	538	2	noL1	"COLO2T,COLO2N"	103	65	L1PA11		HFM1		c1p91600399FS	CTTAGGATCATCTCAGCTATTTGG	c1p91600399ES	AGCTTCAATAAAATACTGGCAAAC
chr1	91625344	91626399	91852756	91853811	+	17022	1055	39	L1HS	"COLO2T,COLO2N"	9701	443	"L1HS,LSU-rRNA_Hsa,MER21C,AT_rich"		HFM1		c1p91625871FS	ATTTGCTAGAATGACTCAGAGACC	c1p91625871ES	GTGAATTCTGCTTCACAATGATAG
chr1	91687064	91687352	91914476	91914764	+	3302	288	17	L1HS	"COLO2T,COLO2N"	2636	203	L1HS	LINE:dbRIP			c1p91687208FS	TTCATCTTATCTACTTGTGGTTGG	c1p91687208ES	ATGATGAGTTCATGTCCTTTGTAG
chr1	92619600	92619963	92847012	92847375	-	79	363	7	L1PA4	"COLO2T,COLO2N"	159	363	"AT_rich,L1PA4"		RPAP2		c1p92619781FS	AAGTAGCAGTTTACTTCAACTCGG	c1p92619781ES	TCATTCTCAGCAAACTATCACAAG
chr1	92849316	92849869	93076728	93077281	+	149	553	5	L1PA2	"COLO2T,COLO2N"	119	569	"L1MEd,AluY"		EVI5		c1p92849592FS	ATAGGCTCCATCGTATCTCACTAC	c1p92849592ES	TAATGCTAGATGACGAGTTAGTGG
chr1	94028472	94028848	94255884	94256260	-	31	376	10	L1PA2	"COLO2T,COLO2N"	41	371	"T-rich,L1PA2"		BCAR3		c1p94028660FS	AGCTGGAATTCTGTTCTTTCTATG	c1p94028660ES	TCATTCTCAGTAAACTATCGCAAG
chr1	94099968	94100285	94327380	94327697	+	40	317	5	L1PA4	"COLO2T,COLO2N"	10	66	"AluSx,L1PA4"				c1p94100126FS	TTTGCATCTTAACTTTCTCATCTG	c1p94100126ES	AACACCACATGTTCTCACTCATAG
chr1	95371596	95371837	95599008	95599249	+	19	241	2	L1PA4	"COLO2T,COLO2N"	6	171	L2b		TMEM56		c1p95371716FS	CTTCAAGCTGTGCAGTATTACAAC	c1p95371716ES	TATGGAAAGAGAGGATTGAAGAAG
chr1	96378586	96378827	96605998	96606239	-	13012	241	17	L1PA3	"COLO2T,COLO2N"	26356	206	"L1PA3,LTR12_"				c1p96378706FS	TCCATTGTTATCTATTTGCTTTTG	c1p96378706ES	TGGAAATCATCATTCTCAGTAAAC
chr1	96412444	96412580	96639856	96639992	+	10	136	2	L1PA3	COLO2T	0	0	"L1ME4a,L1PA3"				c1p96412512FS	AGAATTGTAGGGTAAAGAGTTTGC	c1p96412512ES	ATACACACGTATGTTTATTGCAGC
chr1	96478810	96479202	96706222	96706614	-	41	392	3	noL1	"COLO2T,COLO2N"	41	390	L1PA3				c1p96479006FS	AAATATTCAATTTTCCTTTCCTCC	c1p96479006ES	AACTAGAAATACCATTTGACCCAG
chr1	97560371	97560636	97787783	97788048	+	51	265	6	L1PA2	"COLO2T,COLO2N"	44	265	"(TTTG)n,L1PA2"		DPYD		c1p97560503FS	CTTCCTTTACCAAAAACATTTCAC	c1p97560503ES	TCATTCTCAGTAAACTATCGCAAG
chr1	97794397	97794498	98021809	98021910	-	26	101	5	L1PA2	"COLO2T,COLO2N"	38	156	"AT_rich,L2"		DPYD		c1p97794447FS	TCTTCTCTATTACCAGCCACTCTC	c1p97794447ES	TGATGAGTTCATGTCTTTTGTAGG
chr1	98135862	98136292	98363274	98363704	-	2244	430	11	noL1	"COLO2T,COLO2N"	1981	318	L1MEc	"LINE:Ewing,Iskow"	DPYD		c1p98136077FS	AATATTTTCTTCTTCTCTCCTCCC	c1p98136077ES	TAATGATTAGTATACGCATGTGGG
chr1	98830903	98831382	99058315	99058794	+	39	479	6	L1PA2	"COLO2T,COLO2N"	59	549	"Tigger2,L1PA2"				c1p98831142FS	CAATATCTAAACACAGTTTTCCCC	c1p98831142ES	ATACACACGTATGTTTATTGTGGC
chr1	99451255	99451628	99678667	99679040	-	8854	373	15	L1HS	"COLO2T,COLO2N"	3023	371	"L1HS,MER67C"				c1p99451441FS	AAGCATTTTTAATTCTGTTTTTGG	c1p99451441ES	GATGAGTTCATATCCTTTGTAGGG
chr1	99626303	99626737	99853715	99854149	-	8532	434	20	L1HS	"COLO2T,COLO2N"	14585	444	"Tigger1,L1HS"				c1p99626520FS	GCTACTCCAGTGAACATACAAATG	c1p99626520ES	TCATTCTCAGTAAACTATCGCAAG
chr1	101663256	101663684	101890668	101891096	-	3170	428	14	noL1	"COLO2T,COLO2N"	2723	428	L1PA12				c1p101663470FS	GTTTATATTCCTTATTGGTGCTGG	c1p101663470ES	GCAATCCTAAGTAAAAAGAACAGG
chr1	102173570	102173688	102400982	102401100	+	506	118	5	noL1	COLO2T	0	0	L1PA14		"OLFM3,NOE3"		c1p102173629FS	TTTATTGAAAGCCTTTTATCCATC	c1p102173629ES	TAGAAAGACCTCAAATTAACGACC
chr1	102373088	102373345	102600500	102600757	+	91	257	4	L1PA3	"COLO2T,COLO2N"	28	101	"L1PA10,L1PA3"				c1p102373216FS	TTTCTCTAATGATCAGTGGTGTTG	c1p102373216ES	GATGAGTTAATGTCCTTTGTAGGG
chr1	102469568	102469832	102696980	102697244	+	266886	264	60	L1HS	"COLO2T,COLO2N"	215466	269	"L1HS,AT_rich"				c1p102469700FS	AAAGAACTTGCATATCAGGAAAAG	c1p102469700ES	TCATTCTCAGTAAACTATCGCAAG
chr1	102862494	102863029	103089906	103090441	-	23	535	4	noL1	"COLO2T,COLO2N"	41	67	"L1PA3,Tigger2a,(T)n"				c1p102862761FS	AAAACCTTTATGATGATCCACTTC	c1p102862761ES	TTTCCATAACATTTGTTGTTTTTG
chr1	104380764	104381249	104579241	104579726	+	1675	485	31	L1HS	"COLO2T,COLO2N"	1195	510	"L1HS,(A)n"				c1p104381006FS	AAAGAAAACTAACATTCTTGGACG	c1p104381006ES	TCATTCTCAGTAAACTATCGCAAG
chr1	104790396	104790734	104988873	104989211	-	90	338	4	L1PA3	"COLO2T,COLO2N"	64	338	"(CA)n,L1PA3,MLT2B4"				c1p104790565FS	ACTAAAACATTGGGTTTTTGAAAG	c1p104790565ES	ATACAACATGGAATACTATGCAGC
chr1	105114333	105114445	105312810	105312922	-	9826	112	23	L1HS	"COLO2T,COLO2N"	12947	128	"L1HS,(TTTTTA)n"				c1p105114389FS	AATTTACATGAGCTGTGTATGTGC	c1p105114389ES	CAAATGTCCAACAATGATAGACTG
chr1	105187851	105188035	105386328	105386512	-	1442	184	8	L1HS	"COLO2T,COLO2N"	3606	523	L1HS				c1p105187943FS	TGCCTATGCTATAAACAAAATGTG	c1p105187943ES	GATGAGTTCATATCCTTTGTAGGG
chr1	106074272	106074449	106272749	106272926	+	28	177	2	L1PA2	"COLO2T,COLO2N"	70	177	L1PA2				c1p106074360FS	CATGCAACTGTTTTTCTAAATCTG	c1p106074360ES	TCATTCTCAGTAAACTATCGCAAG
chr1	106088085	106088348	106286562	106286825	-	20	263	7	L1PA2	"COLO2T,COLO2N"	22	263	"L1MC3,L1PA2"				c1p106088216FS	CATATTTCAAAAACGTTACCCTTC	c1p106088216ES	GGATGGCAGAAAATAAATATAAGC
chr1	106291908	106292072	106490385	106490549	-	41	164	3	L1PA3	"COLO2T,COLO2N"	42	166	"L1PA3,L1P2"				c1p106291990FS	ATCAAGTGGAAGAAAGGATATCAG	c1p106291990ES	CAAATGTCCAACAATGATAGACTG
chr1	106770414	106770846	106968891	106969323	+	5316	432	27	L1HS	"COLO2T,COLO2N"	3311	424	"L1HS,L1PA5,(TAAAA)n"				c1p106770630FS	TGATCTCAGCTCTCTACAACCTTC	c1p106770630ES	TCATTCTCAGTAAACTATCGCAAG
chr1	108134815	108135542	108333292	108334019	+	14	727	2	noL1	"COLO2T,COLO2N"	10	730	"L2a,AluSx1"		"VAV3,VAV-3"		c1p108135178FS	ATGTTTGTGCAGTTGTCTATCTTG	c1p108135178ES	CAAAAGTACAAATGTTTTCCAGTG
chr1	113689888	113690857	113888365	113889334	+	26549	969	21	L1HS	"COLO2T,COLO2N"	26853	863	"L1HS,L1PA4"	LINE:Ewing			c1p113690372FS	TATTTCTCCTAATGCTATCCTTCC	c1p113690372ES	AGAGTGAATAGGCAACCTACAAAC
chr1	113847333	113847802	114045810	114046279	+	3254	469	20	L1HS	"COLO2T,COLO2N"	52	475	"L1HS,AluJo"	LINE:dbRIP	MAGI3		c1p113847567FS	TCCATTTTCCAGAAGTTTCTATTC	c1p113847567ES	TCATTCTCAGTAAACTATCGCAAG
chr1	114654220	114654963	114852697	114853440	+	49	743	4	L1PA3	"COLO2T,COLO2N"	47	605	"L1PA3,HAL1b,L1PA4"				c1p114654591FS	GTGTCAACTATTAACAACAGGGTG	c1p114654591ES	AATGCTAAATGATGAGTTAATGGG
chr1	115134042	115134164	115332519	115332641	-	107	122	7	noL1	"COLO2T,COLO2N"	100	122	"SVA_D,L1PA8"				c1p115134103FS	TTCGGCTATTGATACTTGTGTATG	c1p115134103ES	TAGAAAGAGGTAGACATGGGAGAC
chr1	117063834	117064362	117262311	117262839	+	4939	528	21	L1HS	"COLO2T,COLO2N"	6760	528	L1HS				c1p117064098FS	AAGATATGCATGGAAGTGAGATTAG	c1p117064098ES	TAATGCTAGATGACACGTTAGTGG
chr1	118174877	118175201	118373354	118373678	-	45	324	3	L1PA4	"COLO2T,COLO2N"	54	325	"MSTA-int,L1PA4"				c1p118175039FS	ATAGAAAATTTGTACCAGGAGTGG	c1p118175039ES	TCATTCTCAGCAAACTATCACAAG
chr1	118179800	118180111	118378277	118378588	+	6979	311	11	noL1	COLO2T	0	0	"AluSx1,L1MC4a"				c1p118179955FS	CCTCTCTAGGGAATATTCTAAGCC	c1p118179955ES	TTTAAAGCTTGGAACATGATAGTG
chr1	118631032	118631185	118829509	118829662	+	531	153	7	L1PA2	"COLO2T,COLO2N"	369	147	"L1PA2,AluSx"	LINE:Ewing			c1p118631108FS	AAAATAAAATATGAACAGGATGCC	c1p118631108ES	TCATCATTCTCAGTAAACTATCGC
chr1	118961128	118961477	119159605	119159954	-	24	349	3	noL1	"COLO2T,COLO2N"	19	67	L1MA2				c1p118961302FS	GTTTTGTTACCCTCAGATGATTTC	c1p118961302ES	AATGAACTAAATAAAGCACCAAGG
chr1	119202452	119202847	119400929	119401324	+	1427	395	22	L1HS	"COLO2T,COLO2N"	255	394	"L1HS,MER33,MLT1C,L1MA7"				c1p119202649FS	GTCTTAAATCTGACATGACTGGTG	c1p119202649ES	TCATTCTCAGTAAACTATCGCAAG
chr1	119355037	119355206	119553514	119553683	+	157	169	5	noL1	"COLO2T,COLO2N"	57	168		"LINE:Ewing,Iskow,Stewart"			c1p119355121FS	TACTATTCTGCTCTGGATACTCCC	c1p119355121ES	AGAGAGAATCAGGAAAGAGACAAC
chr1	119495002	119495151	119693479	119693628	-	11	149	2	L1PA4	"COLO2T,COLO2N"	2	65	"AluSx,L1PA4"		"BC063600,AK125759,BC043601"	BC063600.L	c1p119495076FS	GAGCAGGAGAGTCAGTCTAAGAAG	c1p119495076ES	GGCATTATTCACAATAGGAAAGAC
chr1	120975144	120975605	121273621	121274082	-	28022	461	44	L1HS	"COLO2T,COLO2N"	30156	367	"L1HS,FLAM_C,AluSc"		LOC647121		c1p120975374FS	ATCACGAGGTTAAGAGATTGAGAC	c1p120975374ES	TCATTCTCAGTAAACTATCGCAAG
chr1	121053461	121053804	121351938	121352281	+	186	343	2	noL1	COLO2T	0	0	ALR/Alpha				c1p121053632FS	AGTTGAACATTCCCTTTGATAGAG	c1p121053632ES	AGAATGCTTCTGTCCAGTTTTTAC
chr1	121058733	121059311	121357210	121357788	+	56	578	6	noL1	"COLO2T,COLO2N"	26	158	ALR/Alpha				c1p121059022FS	TTCACATAAAATCTAGACAGAAGCC	c1p121059022ES	AGATTCTACCAAAAGTGTGTTTCC
chr1	121179826	121180241	121478303	121478718	+	1840	415	18	L1HS	"COLO2T,COLO2N"	4755	412	"L1HS,ALR/Alpha"				c1p121180033FS	GAAACACACTTTTGGTAGAATCTG	c1p121180033ES	GATGAGTTCATATCCTTTGTAGGG
chr1	121183698	121183861	121482175	121482338	+	1378	163	6	noL1	"COLO2T,COLO2N"	1261	163	ALR/Alpha				c1p121183779FS	CAGAAAATACTTTGTGATGATTGC	c1p121183779ES	AGAATGCTTCTGTCCAGTTTTTAC
chr1	121185473	121186879	121483950	121485356	+	182	1406	14	noL1	"COLO2T,COLO2N"	211	1133	ALR/Alpha	"Alu:Hormozdiari,Alu:Hormozdiari,Witherspoon"			c1p121186176FS	ACACACAACACAAGGAAGTTACTG	c1p121186176ES	CTTTATGATGTGTGCTTTCAACTC
chr1	142123534	142123690	143282011	143282167	+	27	156	3	L1PA10	"COLO2T,COLO2N"	6	156	MER21B				c1p142123612FS	TTTAACCCATCATGCCTATAGAAG	c1p142123612ES	ATTATCCTCAGCAAACTAATCCAG
chr1	145247121	145247408	146780497	146780784	+	14	287	3	L1PA4	COLO2T	0	0	"L1PA4,L1PA7"		"KIAA1693,NBPF1,BC036212"		c1p145247264FS	TCTGCCTTAATTTCGTTATTTACC	c1p145247264ES	ACAACAAACACAGCATATTCTCAC
chr1	145346976	145347120	146880352	146880496	+	14	144	2	L1PA4	COLO2T	0	0	MSTB		"KIAA1693,NBPF1,BC036212"	BC036212.2	c1p145347048FS	TTTAGAAATAGATTCCCAAGCAAC	c1p145347048ES	TCATTCTCAGCAAACTATCACAAG
chr1	145399952	145400107	146933328	146933483	+	45	155	2	L1PA3	"COLO2T,COLO2N"	4	65	L1PA3		"KIAA1693,NBPF1,BC036212"		c1p145400029FS	CTTTTTGAACTGATGAAAATGTTG	c1p145400029ES	CAAATGTCCAACAATGATAGACTG
chr1	147513085	147513197	149246461	149246573	-	15	112	4	L1PA3	"COLO2T,COLO2N"	18	111	"L1PA3,L1MEc"				c1p147513141FS	CTTGCATCTGCATGTTTATAGTTC	c1p147513141ES	CAAATGTCCAACAATGATAGACTG
chr1	147575019	147575324	149308395	149308700	+	1036	305	12	noL1	"COLO2T,COLO2N"	2604	314		"LINE:dbRIP,Ewing,Iskow"			c1p147575171FS	CACAAAGGAGCACTTAGTGAAATC	c1p147575171ES	AATGTTCTCCTTTAACCAGTTTTG
chr1	148841622	148841918	150574998	150575294	-	206	296	20	L1HS	"COLO2T,COLO2N"	254	83	"L1HS,AluSx1"				c1p148841770FS	GTAAATACATAGAAAAAGGGCTGG	c1p148841770ES	CTGTAGTCCTAGCACTTTAGGAGG
chr1	150609555	150609831	152342931	152343207	+	32	276	3	L1PA4	COLO2T	0	0	L1PA4				c1p150609693FS	AGGTAAACCATTCAGTCTTTCAAC	c1p150609693ES	ATACTTCCCAACTCATTCTGAGAG
chr1	150710243	150710563	152443619	152443939	-	265	320	7	noL1	"COLO2T,COLO2N"	14	68	"SVA_D,MIR,MER58A"	"LINE:Ewing,Stewart"			c1p150710403FS	AACTAACAATGTCCAGTCCTTCTC	c1p150710403ES	AAATAGACATGGGAGACTTTTCAC
chr1	150728454	150729010	152461830	152462386	-	53523	556	45	L1HS	"COLO2T,COLO2N"	65233	571	"L1P3,L1HS"				c1p150728732FS	TGTAAGGCTAGTCTAGTGGTGATG	c1p150728732ES	TGGGAGATATACCTAATGCTAGATG
chr1	151517218	151517605	153250594	153250981	-	486	387	9	L1HS	"COLO2T,COLO2N"	504	502	"L1HS,(T)n,MIRb"				c1p151517411FS	CTAGATGAATGGAAGTCATTGTTG	c1p151517411ES	TCATTCTCAGTAAACTATCGCAAG
chr1	152116507	152117006	153849883	153850382	+	14	499	4	noL1	"COLO2T,COLO2N"	35	379	AluSz		GATAD2B		c1p152116756FS	AGCTGGAGCCTACTTTTCTAAGTC	c1p152116756ES	TAGTCAGTCCTAGCTACTTGGGAG
chr1	152154799	152155402	153888175	153888778	+	132	603	4	noL1	"COLO2T,COLO2N"	201	611	"AluSc8,AluSx1"		GATAD2B		c1p152155100FS	GCATCATTGTCACTTCTGTCTTAC	c1p152155100ES	ACTGTATTTCAAAAATTAGCTGGG
chr1	154453377	154453679	156186753	156187055	+	87	302	5	noL1	"COLO2T,COLO2N"	40	311	L1PA2		PMF1		c1p154453528FS	no primer	c1p154453528ES	no primer
chr1	156505233	156505615	158238609	158238991	+	4466	382	45	L1HS	"COLO2T,COLO2N"	4074	383	"L1HS,(A)n,L1PB2"	LINE:Ewing			c1p156505424FS	TTGACTTGCATATGTTAAACCATC	c1p156505424ES	GATGAGTTCATATCCTTTGTAGGG
chr1	156750434	156750832	158483810	158484208	+	63	398	7	L1PA4	"COLO2T,COLO2N"	32	336	L1PA4				c1p156750633FS	ACTTTCTTCACCAAGTGTTCTCTC	c1p156750633ES	AAATGATGAGTTCATGTCCTTTG
chr1	156878823	156879007	158612199	158612383	+	230	184	5	L1PA4	"COLO2T,COLO2N"	135	282			SPTA1	SPTA1.19	c1p156878915FS	GACTATGCCAACCTAAAACAATTC	c1p156878915ES	TCATTCTCAGCAAAGTATCACAAG
chr1	157681576	157681694	159414952	159415070	+	68	118	3	L1PA3	"COLO2T,COLO2N"	24	215	L1PA3		BC038194		c1p157681635FS	CAGGCCATAAGAAGCTAGAGTAAG	c1p157681635ES	GTCACAACATTTAAGCAACTCAAC
chr1	157695331	157695534	159428707	159428910	+	56	203	5	L1PA3	"COLO2T,COLO2N"	50	203	"L1MC3,L1PA3"		BC038194		c1p157695432FS	TTTGTGTAAAACTGTCCAACTCTC	c1p157695432ES	CAAATGTCCAACAATGATAGACTG
chr1	157769333	157769868	159502709	159503244	+	11146	535	37	L1HS	"COLO2T,COLO2N"	12479	554	"L1HS,AT_rich"				c1p157769600FS	AATATGAGACCAGATCCAACTTTC	c1p157769600ES	ATGAGTGCAACAAATAAAGACAAC
chr1	157810745	157811057	159544121	159544433	-	55	312	4	noL1	"COLO2T,COLO2N"	28	309	L1PA3				c1p157810901FS	TTTTAGAGTTTCCAGTTTTTCTGC	c1p157810901ES	AGGGAGTTCCCTTTCCTAGTC
chr1	159275635	159275748	161009011	161009124	+	15	113	7	noL1	"COLO2T,COLO2N"	103	101	(A)n		USF1	USF1.L	c1p159275691FS	ATACTGGACACACTAAACTCTGGG	c1p159275691ES	AACCCAGAGGACCAAGAGAAC
chr1	160426602	160426826	162159978	162160202	-	52	224	6	L1PA3	"COLO2T,COLO2N"	49	85	"L1PA3,L3"		NOS1AP		c1p160426714FS	TTGAGTTAAAACCTGAATATTGCC	c1p160426714ES	ATTTGGCAAAGGATACAAAATTAC
chr1	160501543	160501975	162234919	162235351	-	24	432	8	L1PA3	"COLO2T,COLO2N"	23	449	L1PA3		NOS1AP		c1p160501759FS	TTTGTATTTTTAGTAGAGACGGGG	c1p160501759ES	TAAGGTTTTATTGTTCCTCACAGC
chr1	160973228	160973568	162706604	162706944	-	259	340	3	L1PA8A	"COLO2T,COLO2N"	54	131	"T-rich,L2c,L1PA8A,L1P4"		DDR2		c1p160973398FS	GGTAAATGCTTCTAAATGGATGTC	c1p160973398ES	ATGAAATTGGAAAACATCATTCTC
chr1	161498190	161498628	163231566	163232004	-	4403	438	28	L1HS	"COLO2T,COLO2N"	2127	420	"L1HS,AT_rich"				c1p161498409FS	TCTCAACAACTCCCTTCTAGTACC	c1p161498409ES	GATGAGTTCATATCCTTTGTAGGG
chr1	163819597	163819782	165552973	165553158	-	266	185	4	noL1	"COLO2T,COLO2N"	387	186	MARNA	"LINE:Ewing,Iskow,Stewart"			c1p163819689FS	no primer	c1p163819689ES	no primer
chr1	164206118	164206767	165939494	165940143	-	143239	649	50	L1HS	"COLO2T,COLO2N"	171100	653	"(T)n,L1HS,MLT1J,L1M5"				c1p164206442FS	TATACCTATGCAACAAAACTGCAC	c1p164206442ES	TGGGAGATATACCTAATGCTAGATG
chr1	164342183	164342376	166075559	166075752	+	12	193	3	L1PA4	"COLO2T,COLO2N"	18	207	"L1PA2,L1PA4,L1PA17,L1PA16"		FAM78B		c1p164342279FS	AACTTTTATTTTAGATTCAGGGGG	c1p164342279ES	CAAATGTCCAACAATGATAGACTG
chr1	164460877	164461315	166194253	166194691	-	96	438	6	L1PA3	"COLO2T,COLO2N"	42	438	"L1PA3,L1PA15"				c1p164461096FS	CCATCCCTTTAATTTCAGTCTATG	c1p164461096ES	TGGAAATCATCATTCTCAGTAAAC
chr1	164475327	164475880	166208703	166209256	-	301	553	4	L1PA3	"COLO2T,COLO2N"	398	553	"L1PA3,L1MC1,L1PA4"				c1p164475603FS	AAGCAATAAAAGTTCCTGATGTTC	c1p164475603ES	TAATGCTAAATGACGAGTTAATGG
chr1	164478565	164478965	166211941	166212341	-	142509	400	40	L1HS	"COLO2T,COLO2N"	125265	403	"L1PA3,L1HS"				c1p164478765FS	ATTGGAATAGTTTCAGAAGGAATG	c1p164478765ES	GATGAGTTCATATCCTTTGTAGGG
chr1	166584488	166584733	168317864	168318109	-	47	245	2	L1PA2	"COLO2T,COLO2N"	13	245	"L1PA2,LTR12F,L1PA16"				c1p166584610FS	TGGATATGAGACCTTTGTTGTATG	c1p166584610ES	TGGAAATCATCATTCTCAGTAAAC
chr1	166895210	166895493	168628586	168628869	-	21	283	5	L1PA3	"COLO2T,COLO2N"	13	302	"Tigger1,L1PA3"				c1p166895351FS	TTTTTAGTAGAGACGGGATTTCAC	c1p166895351ES	TCATTCTCAGTAAACTATCGCAAG
chr1	167487309	167487474	169220685	169220850	-	289	165	6	L1PA2	"COLO2T,COLO2N"	226	165	"L1PA2,L1PB3"		NME7		c1p167487391FS	TTGACTTTCTGTCTTGATGATCTG	c1p167487391ES	TTCTCAGTAAACTGTTGCAAGAAC
chr1	170427768	170427967	172161145	172161344	-	34	199	2	L1PA3	"COLO2T,COLO2N"	22	243	L1PA5		DNM3		c1p170427867FS	TTTGTAGTTCTCCTTGAAGAGGTC	c1p170427867ES	TGGGAGATATACCTAATGCTAGATG
chr1	171216741	171217084	172950118	172950461	-	1232	343	15	L1PA2	"COLO2T,COLO2N"	1652	349	"L1ME5,L1PA2,L1M5"				c1p171216912FS	ATAATCGCTGAGTCATAAAGTGTG	c1p171216912ES	TCATTTTCAGTAAACTATCGCAAG
chr1	171856456	171856846	173589833	173590223	+	31	390	6	noL1	"COLO2T,COLO2N"	56	390	L1PA11		ANKRD45		c1p171856651FS	GCCTAAAGTTTTCTTTTTCTGTTG	c1p171856651ES	ACCTCAAATTAACAACCTAACACC
chr1	171937647	171937912	173671024	173671289	+	34	265	4	L1PA6	"COLO2T,COLO2N"	39	136	L2				c1p171937779FS	CTCAGTCATATCTGCTGAACTTTG	c1p171937779ES	AAACTATCACAAGGACAGAAAACC
chr1	172187874	172188191	173921251	173921568	+	10	317	4	noL1	"COLO2T,COLO2N"	15	318	"(A)n,(T)n"		RC3H1	RC3H1.6	c1p172188032FS	GACTGGAGAACTTACCTTGAGAAG	c1p172188032ES	TTAAGCAAAGCTGAATTATTTGTG
chr1	172398288	172398594	174131665	174131971	-	12	306	5	L1PA2	"COLO2T,COLO2N"	16	314	"L1PA2,(T)n"		RABGAP1L		c1p172398441FS	TGAAAGAATTTTATTAGGCATGTG	c1p172398441ES	TAGGTATATCTCCCAATGCTATCC
chr1	172825591	172826161	174558968	174559538	-	7803	570	32	L1HS	"COLO2T,COLO2N"	14225	528	"L1HS,MSTB1,L1MA3,(T)n"	LINE:dbRIP	RABGAP1L		c1p172825876FS	TTTATATATGTCGAGAGAAAGGGG	c1p172825876ES	TAATGCTAGATGACACGTTAGTGG
chr1	173561716	173561921	175295093	175295298	+	96	205	3	L1PA5	"COLO2T,COLO2N"	182	129	"L1PA5,L3"		TNR		c1p173561818FS	AGCCTTCCCTATAAAATAAAGGTC	c1p173561818ES	AACCCAAATGTCCATCAATAATAG
chr1	173676292	173676440	175409669	175409817	+	11	148	3	L1PA4	"COLO2T,COLO2N"	12	65	"L2,L1PA4"		TNR		c1p173676366FS	TATGCTCTCATCTTCATACTCAGC	c1p173676366ES	CAAATGTCCAACAATGATAGACTG
chr1	174233785	174234253	175967162	175967630	+	1405	468	8	noL1	"COLO2T,COLO2N"	1664	99	L1PA3		RFWD2		c1p174234019FS	ACCAGAAAGGTAAAATCATCTCTG	c1p174234019ES	AACTAGAAATACCATTTGACCCAG
chr1	174491498	174491796	176224875	176225173	-	1388	298	20	L1PA2	"COLO2T,COLO2N"	2197	404	L1MA5				c1p174491647FS	TTACTGTTCTTTCACTTCCAGATG	c1p174491647ES	TCATTCTCAGTAAACTATCGCAAG
chr1	174549614	174549763	176282991	176283140	-	20	149	3	noL1	"COLO2T,COLO2N"	28	65	L1PA3				c1p174549688FS	TTTTAGAGTTTCCAGTTTTTCTGC	c1p174549688ES	CATTTCCATTTGAGGTACCATAC
chr1	174988061	174988556	176721438	176721933	+	4724	495	21	L1HS	"COLO2T,COLO2N"	1987	493	L1HS		"PAPPA2,PAPPE"		c1p174988308FS	CTTTCTACTGCATCCCTCTACTTC	c1p174988308ES	TCATTCTCAGTAAACTATCGCAAG
chr1	175636499	175636619	177369876	177369996	-	14	120	3	L1PA3	"COLO2T,COLO2N"	22	213					c1p175636559FS	ACCAGCTCTCTCATGAACTCTTAC	c1p175636559ES	TCATTCTCAGTAAACTATCGCAAG
chr1	175644300	175644551	177377677	177377928	-	159	251	6	L1PA2	"COLO2T,COLO2N"	159	358	"L2a,L1PA2,(T)n"				c1p175644425FS	TAGCCATGTAAGGTCTTTTAGTCC	c1p175644425ES	TAGACTGGATTAAGAAAATGTGGC
chr1	177672558	177672693	179405935	179406070	+	37	135	3	L1PA8	"COLO2T,COLO2N"	36	330	L1PA8		"C1orf125,DKFZp434N1720"		c1p177672625FS	CTTTTGCCTAATAAATACAGAGGG	c1p177672625ES	CTATTTACAACAGCAAAGACATGG
chr1	177841786	177842028	179575163	179575405	-	1016	242	5	noL1	"COLO2T,COLO2N"	103	67	L1MC1	"LINE:Beck,Ewing,Iskow"	TDRD5	TDRD5.F	c1p177841907FS	TAGTTTTGCTTTTTCCAGAGAGTC	c1p177841907ES	CTAGACCTTACACCCTTCACAAAC
chr1	178575415	178575620	180308792	180308997	+	11	205	2	L1PA5	COLO2T	0	0	"L2a,L1PA5"		ACBD6		c1p178575517FS	ACTTCCTTTCATTGCTTCAGTAAC	c1p178575517ES	GACTGGATTAAGAAAATATGGCAC
chr1	178934537	178935025	180667914	180668402	-	136274	488	75	L1HS	"COLO2T,COLO2N"	147638	488	"L1M2,L1HS"		XPR1		c1p178934781FS	TTAGCTTTCAGATGTAGAATTCCC	c1p178934781ES	TCATTCTCAGTAAACTATCGCAAG
chr1	179102242	179102544	180835619	180835921	-	28	302	5	L1HS	"COLO2T,COLO2N"	154	475	HAL1	LINE:dbRIP	XPR1		c1p179102393FS	ATAAAATTCATCCAGCTTGAAAAG	c1p179102393ES	TCATTCTCAGTAAACTATCGCAAG
chr1	179517487	179517857	181250864	181251234	+	998	370	8	L1PA4	"COLO2T,COLO2N"	1010	387	L1PA4				c1p179517672FS	AGATTGTTGTTTCAATAAATGCTG	c1p179517672ES	AACTAGAAATACCATTTGACCCAG
chr1	180212912	180213671	181946289	181947048	+	33	759	6	L1PA8	"COLO2T,COLO2N"	34	299	"L1PA8,L1PA4"				c1p180213291FS	GCTATAAATTCCCCCTCTTAACAC	c1p180213291ES	AATGCTAAATGACAAGTTAATGGG
chr1	181892801	181893079	183626178	183626456	-	1492	278	12	L1PA4	"COLO2T,COLO2N"	833	358	"L1M2,L1PA4"		RGL1		c1p181892940FS	AATTGTGAAAATAGCACATCAAAC	c1p181892940ES	ATACACCATGGAATACTATGCAGC
chr1	181899952	181900148	183633329	183633525	+	35	196	2	L1PA3	"COLO2T,COLO2N"	40	224	"L1M2,L1PA3"		RGL1		c1p181900050FS	TAAGCAATTACAGCAAGGTTACAG	c1p181900050ES	ATGATGAGTTCATGTCCTTTGTAG
chr1	182366196	182366377	184099573	184099754	-	72	181	4	L1PA4	"COLO2T,COLO2N"	188	73	"L1PA4,L1MB7"				c1p182366286FS	CTTTTGTATCAGGGTAATACTGGG	c1p182366286ES	ATGATGAGTTCATGTCCTTTGTAG
chr1	182466701	182467257	184200078	184200634	-	33	556	3	L1PA4	"COLO2T,COLO2N"	138	556	"L1PA4,AluY"				c1p182466979FS	CTCTCTGTTTGTCTGTTATTGGTG	c1p182466979ES	ATCACAAGGTCAGGAGATAGACAC
chr1	182507917	182508053	184241294	184241430	+	27	136	8	L1PA2	"COLO2T,COLO2N"	14	75	L1PA2				c1p182507985FS	GATCACAAAATATGCTGTCAAATC	c1p182507985ES	TCTATCATATCCAATACTGCCTCC
chr1	183087353	183087728	184820730	184821105	+	2003	375	14	L1HS	"COLO2T,COLO2N"	4435	439	"L1HS,AT_rich"	LINE:dbRIP	"NIBAN,FAM129A"		c1p183087540FS	GATCTCTTCTGAGTAAACCACACC	c1p183087540ES	TCATTCTCAGTAAACTATCGCAAG
chr1	184122792	184123078	185856169	185856455	-	24	286	3	L1PA2	"COLO2T,COLO2N"	7	126	"L1PA2,L2"		HMCN1		c1p184122935FS	TAATACACTCCAATGTCAGCTCTC	c1p184122935ES	AACACCACATATTCTCACTCACAG
chr1	184879073	184879440	186612450	186612817	+	5649	367	26	L1PA2	"COLO2T,COLO2N"	6586	417	"L2c,L1PA2"				c1p184879256FS	GAGGGACACTAATGAGATTACTCG	c1p184879256ES	ACACTGCATATTCTCACTCATAGG
chr1	185579168	185579578	187312545	187312955	-	1348	410	16	L1HS	"COLO2T,COLO2N"	1344	410	"T-rich,L1HS,AT_rich"				c1p185579373FS	AATAAAATTGGCTATGCAAGTACC	c1p185579373ES	GATGAGTTCATATCCTTTGTAGGG
chr1	185776099	185776323	187509476	187509700	-	18	224	2	L1PA3	"COLO2T,COLO2N"	85	224					c1p185776211FS	TTTATCATCCACAAATACTGATGC	c1p185776211ES	TGGAAATCATCATTCTCAGTAAAC
chr1	185839393	185839603	187572770	187572980	+	279	210	28	L1HS	"COLO2T,COLO2N"	331	210	"L1HS,(A)n,MER21A"	LINE:dbRIP			c1p185839498FS	ATATATAACCCTAGCCCACCTAGC	c1p185839498ES	CAAATGTCCAACAATGATAGACTG
chr1	185869910	185870148	187603287	187603525	+	23	238	5	noL1	"COLO2T,COLO2N"	10	236	"(GAAA)n,L1PA3"				c1p185870029FS	AAGAGTATGGCTTGGTTTTACTTG	c1p185870029ES	TCATCATTCTCAGTAAACTATCGC
chr1	186058803	186059155	187792180	187792532	-	2249	352	29	L1PA2	"COLO2T,COLO2N"	3356	383	"L1PBa,L1PA2"				c1p186058979FS	GTCTTTTCTTCATCTTGGCTTTAG	c1p186058979ES	TGGAAATCATCATTCTCAGTAAAC
chr1	186265291	186265392	187998668	187998769	+	923	101	3	noL1	COLO2T	0	0	L1MB1				c1p186265341FS	TACTTGTAACTCCTGGGCTAATTG	c1p186265341ES	AAAGGTTCCAATTTCTCTAAATCC
chr1	186266684	186267117	188000061	188000494	-	132	433	9	L1PA3	"COLO2T,COLO2N"	111	244	L1PA3				c1p186266900FS	AGATAAGTGGAAATTAAAACGTGG	c1p186266900ES	TACCCAAAGGACTATAAATCTTGC
chr1	186588008	186588300	188321385	188321677	-	14	292	4	L1PA2	"COLO2T,COLO2N"	17	69	"AluJb,L1PA2"				c1p186588154FS	ATTATCTACTCGAGGATTGGTCAC	c1p186588154ES	TAGACTCTGGATATTAGCCCTTTG
chr1	187351528	187351635	189084905	189085012	-	10	107	2	L1HS	"COLO2T,COLO2N"	10	65	"L1HS,L1MB7"	LINE:dbRIP			c1p187351581FS	ATTTTTAAATGTTTGGCAGAGTTC	c1p187351581ES	ACTTCTTATCAAAAACGATGGAAG
chr1	188050599	188051150	189783976	189784527	-	10	551	3	noL1	"COLO2T,COLO2N"	53	550					c1p188050874FS	GATGGCTTTCTTATTTTGTTTTTC	c1p188050874ES	GATTTCCAAACAACTCATTTATGC
chr1	188544374	188544603	190277751	190277980	+	11	229	2	L1PA3	COLO2T	0	0	"L1MEe,L1PA3,L1MB3"		FAM5C		c1p188544488FS	TTAATCTGTTGATGTACACTTGGG	c1p188544488ES	TTGCTTTTGAGAAGACATAAGAAC
chr1	188563031	188563337	190296408	190296714	+	71	306	15	L1PA16	"COLO2T,COLO2N"	254	99	"AluSx1,L1PA16"		FAM5C		c1p188563184FS	TATGCTAAATGTGCAGCTAAGAAG	c1p188563184ES	AGGTCTAAATGCCTGATGTAAAAC
chr1	188858933	188859551	190592310	190592928	+	14	618	5	L1PA4	"COLO2T,COLO2N"	30	258	"AluSx1,L1PA4,(TAAAA)n"				c1p188859242FS	GGTGAAAACCCATCTCTACTAAAAG	c1p188859242ES	TAATGTTAAATGACAAGTTGCTGG
chr1	190338352	190338956	192071729	192072333	-	34621	604	24	L1HS	"COLO2T,COLO2N"	34794	823	L1HS				c1p190338654FS	ACCACTGACTTAAGTTTTCTCACC	c1p190338654ES	GATCTCTTATTTCAGGACAACCAG
chr1	190528544	190528922	192261921	192262299	-	8299	378	24	noL1	"COLO2T,COLO2N"	4771	378	L1MA2	"LINE:Ewing,Iskow"			c1p190528733FS	AAAACTCTTTTTAATTTTTGTGGG	c1p190528733ES	GAAACCCCATCTCTACTACAAATC
chr1	191953125	191953672	193686502	193687049	-	1750	547	32	L1HS	"COLO2T,COLO2N"	2210	538	"L1HS,MLT2B2,L1MC5"				c1p191953398FS	CTATAAGTTCTGCCTTCTACACCC	c1p191953398ES	TAATGCTAGATGACACGTTAGTGG
chr1	192103415	192103758	193836792	193837135	+	11537	343	21	L1HS	"COLO2T,COLO2N"	9006	504	L1HS				c1p192103586FS	TTTTCATGACAACTTTATAGCCTG	c1p192103586ES	GATGAGTTCATATCCTTTGTAGGG
chr1	192271831	192271950	194005208	194005327	-	30	119	5	L1PA3	"COLO2T,COLO2N"	62	119	"T-rich,L1PA3,AluY"				c1p192271890FS	TAGGTTTGTGTGTGTGTATGTGTG	c1p192271890ES	TAGACTGGATTAAGAAAATGTGGC
chr1	192492612	192492777	194225989	194226154	-	30	165	3	L1PA2	"COLO2T,COLO2N"	24	330	"MLT2B1,L1PA2"				c1p192492694FS	AGAAGAGATTAGCATTTGAACTGG	c1p192492694ES	TTTTGCTAACGTACCCTTATTTTC
chr1	193201134	193201732	194934511	194935109	-	4814	598	15	noL1	"COLO2T,COLO2N"	853	373		"LINE:Ewing,Stewart"			c1p193201433FS	ATGAGAAGAGGTGCTGAACTAAAC	c1p193201433ES	CAGTCTCCTCAGCTAGAAAAGTTC
chr1	194160358	194160799	195893735	195894176	-	51296	441	49	L1HS	"COLO2T,COLO2N"	29188	440	"L2a,L1HS,(T)n"				c1p194160578FS	AGAGACATCTTGTTTTCATTTTCC	c1p194160578ES	TCATTCTCAGTAAACTATCGCAAG
chr1	194454569	194455186	196187946	196188563	-	44846	617	47	L1HS	"COLO2T,COLO2N"	30241	617	"L1HS,LTR41,L1MDa"				c1p194454877FS	TACAGCAATAGCAGATGTAAGGAG	c1p194454877ES	GAGGAATAGCATTGGGAGATATAC
chr1	194585295	194585463	196318672	196318840	-	45	168	5	L1PA3	"COLO2T,COLO2N"	23	161	"L1PA3,AT_rich,LTR78B"		"KCNT2,SLICK"		c1p194585379FS	TAAAAGGAAAGGATATTGGAAGAC	c1p194585379ES	CCACACGTTCTCACTCATAGATAG
chr1	194739589	194739840	196472966	196473217	-	101	251	5	L1PA3	"COLO2T,COLO2N"	85	93	L1PA3		"KCNT2,SLICK"		c1p194739714FS	ATGCTCTGACAGTCTAGGATTACC	c1p194739714ES	AGGAAGAGTTCATGTCCTTTGTAG
chr1	195480524	195480882	197213901	197214259	-	30	358	4	L1PA4	COLO2T	0	0	"L1PA4,L1PA7"				c1p195480703FS	GTTTTCTTATTTGCTTTTCACCTC	c1p195480703ES	AAGATTTTAAAGCAGCCATCATAG
chr1	197261283	197262022	198994660	198995399	+	9559	739	14	L1HS	"COLO2T,COLO2N"	3017	738	"L1MEe,L1HS"				c1p197261652FS	TTTCTAGGTTTTCATCTTCCTTTG	c1p197261652ES	AATGCTAGATGACAAGTTAGTGGG
chr1	197706780	197707182	199440157	199440559	+	2157	402	24	L1HS	"COLO2T,COLO2N"	2172	396	"L1HS,L2b,(A)n,MLT1A1"	LINE:dbRIP			c1p197706981FS	GATTGAAATGTTTATCATGTGGTC	c1p197706981ES	GATGAGTTCATATCCTTTGTAGGG
chr1	197790257	197790396	199523634	199523773	+	10	139	2	L1PA2	"COLO2T,COLO2N"	37	259	"L1MA3,L1PA2"				c1p197790326FS	ATCCATATGCTGAAGAGAAAAATG	c1p197790326ES	ATTTTCATAGCAAAGACTTGGAAC
chr1	197942929	197943233	199676306	199676610	+	123	304	3	L1PA2	"COLO2T,COLO2N"	67	65	"L1PA2,MER5B"				c1p197943081FS	TTACTGGTTCCTCTTCAGATTAGC	c1p197943081ES	TAAATCATCATTAAAATATGCCCC
chr1	198177896	198178411	199911273	199911788	+	1850	515	8	noL1	"COLO2T,COLO2N"	1	65	AluSq2				c1p198178153FS	AAGGCATTTTTCTCCTAGACAAG	c1p198178153ES	ATACTTAAGACTGGTTTGGGTTTG
chr1	198427239	198427508	200160616	200160885	+	86	269	11	L1PA4	"COLO2T,COLO2N"	74	120	"(TAAA)n,AluSx1,L1PA4"				c1p198427373FS	TTATCTACCCACAGAGTTTTCCAC	c1p198427373ES	ATGATGAGTTCATGTCCTTTGTAG
chr1	200496583	200496878	202229960	202230255	-	205	295	5	L1PA3	"COLO2T,COLO2N"	283	295	"L1PA3,L1M6,(TTA)n"		"LGR6,VTS20631"		c1p200496730FS	ATATTTTCAAGTAGTTTTTCCCCC	c1p200496730ES	TAGACTGGATTAAGAAAATGTGGC
chr1	200702716	200702978	202436093	202436355	-	14	262	2	L1PA4	"COLO2T,COLO2N"	2	65	L1PA4		PPP1R12B		c1p200702847FS	CATGTAGGCACTCCATAACAATAG	c1p200702847ES	GAATACTATGCAGCCATAAAAAGG
chr1	205294858	205295087	207228235	207228464	-	14	229	2	noL1	COLO2T	0	0			PFKFB2		c1p205294972FS	TTTTTATAGGTGAGGAAACAGAGG	c1p205294972ES	AAGTACAAAGGCTAAACCTGTGAG
chr1	205959186	205959575	207892563	207892952	+	1313	389	13	L1PA2	"COLO2T,COLO2N"	806	297	"AluJb,L1PA2"		CR1L		c1p205959380FS	AACCCTCTGTGTCTCAGTTTCTAC	c1p205959380ES	ATGAAATTGGAAAACATCATTCTC
chr1	208153340	208153805	210086717	210087182	-	1615	465	13	L1HS	"COLO2T,COLO2N"	1738	465	"HAL1,L1HS"				c1p208153572FS	ACTATGAGACTTCCCAGTTTATGC	c1p208153572ES	TCATTCTCAGTAAACTATCGCAAG
chr1	208681321	208681757	210614698	210615134	-	13	436	3	L1PA2	"COLO2T,COLO2N"	46	67	(TA)n		HHAT		c1p208681539FS	CTATTCAAAGTGCAGAGGAACC	c1p208681539ES	TAGATGACAAGTTAGTGGGTTCAG
chr1	208913685	208913978	210847062	210847355	-	15	293	2	L1PA2	"COLO2T,COLO2N"	2	65	"AluJb,L1PA2,(TTTA)n"		HHAT		c1p208913831FS	ATCACACAATATTATTCTAGGGGG	c1p208913831ES	GACAGAGATGGAAGAGCAGTTAG
chr1	209087686	209087879	211021063	211021256	+	22	193	3	L1PA4	"COLO2T,COLO2N"	5	235	"AT_rich,L1PA4"		KCNH1		c1p209087782FS	AATTCTTGGTGTCAAATCATTTTC	c1p209087782ES	TCATTCTCAGCAAACTATCACAAG
chr1	209190108	209190236	211123485	211123613	-	12	128	2	L1PA2	"COLO2T,COLO2N"	9	65	L1PA2		KCNH1		c1p209190172FS	TTGGCAACAACATTATGAGATAAC	c1p209190172ES	AAACTGATAGCAAAGACTTGGAAC
chr1	215498726	215498931	217432103	217432308	+	17	205	3	L1PA4	COLO2T	0	0	"AluJo,L1PA4,MLT1I"				c1p215498828FS	TCAGATCTTCTGTCCCATGTATAG	c1p215498828ES	CAAATGTCCAACAATGATAGACTG
chr1	215615276	215615568	217548653	217548945	-	2648	292	10	noL1	"COLO2T,COLO2N"	1900	222	"MER115,MER5A"	"LINE:Ewing,Iskow,Stewart"			c1p215615422FS	AGTGTTGATACATGTGCTCCTCAG	c1p215615422ES	CTCGGAAAGCATAAGAACTAAATC
chr1	215930244	215930502	217863621	217863879	-	75	258	11	L1PA2	"COLO2T,COLO2N"	158	258	"L1MEd,L1PA2"		SPATA17		c1p215930373FS	TTTTAGTAGAGACAGGGTTTCACC	c1p215930373ES	TAGACTGGATTAAGAAAATGTGGC
chr1	216248813	216249254	218182190	218182631	-	1884	441	24	L1HS	"COLO2T,COLO2N"	1731	439	"MER4-int,L1HS,LTR14B"	"LINE:dbRIP,Alu:Iskow"			c1p216249033FS	GAGAGCAGGTTCTTTTAACTCAAG	c1p216249033ES	GATGAGTTCATATCCTTTGTAGGG
chr1	216313060	216313437	218246437	218246814	+	6198	377	30	L1HS	"COLO2T,COLO2N"	17934	375	"L1HS,MER45B"	LINE:dbRIP			c1p216313248FS	AATTGCTATAATCTTTCCAAATGC	c1p216313248ES	GATGAGTTCATATCCTTTGTAGGG
chr1	216338170	216338286	218271547	218271663	+	48	116	3	L1PA3	"COLO2T,COLO2N"	53	71	"L1PA3,L2b"				c1p216338228FS	AGTTATACTACCATGGCCAAAAAC	c1p216338228ES	CAAATGTCCAACAATGATAGACTG
chr1	218301903	218302391	220235280	220235768	-	27	488	3	L1PA3	"COLO2T,COLO2N"	16	65	"L1PA3,AT_rich"		"PIP,BPNT1"		c1p218302147FS	ATATCTAGGGGACAATCAGATGAG	c1p218302147ES	CGTATGTTTATTGTGGCACTATTC
chr1	219235114	219235424	221168491	221168801	-	50	310	11	L1HS	"COLO2T,COLO2N"	44	416	"L1HS,L1MC1,L1ME1"				c1p219235269FS	AAATAGGAGCCTCAGAAATAATCC	c1p219235269ES	AGTTTGAAGTCAGGTAGTGTGATG
chr1	219894143	219894418	221827520	221827795	-	1879	275	9	noL1	"COLO2T,COLO2N"	1801	293	"AluY,L1ME2"	"LINE:dbRIP,Ewing"			c1p219894280FS	CAGAGAGACACATCTCACTTATGG	c1p219894280ES	TTTAGAGGGGACTAACATTCAAAC
chr1	220971988	220972172	222905365	222905549	-	338	184	2	L1PA3	"COLO2T,COLO2N"	540	427			"AK094916,C1orf58"		c1p220972080FS	TTCTCAGAGATAAGACCTCTAGGC	c1p220972080ES	AGCTATTTCCAGAAACTACAGACC
chr1	221413634	221413800	223347011	223347177	+	444	166	4	L1PA3	"COLO2T,COLO2N"	718	167	L1ME4a				c1p221413717FS	TTCAAAGCAAGAAGGAAGATAAAG	c1p221413717ES	TCATTCTCAGTAAACTATCGCAAG
chr1	221439402	221440069	223372779	223373446	-	73	667	17	L1PA2	"COLO2T,COLO2N"	70	518	"(TTC)n,AluSc8,L1PA2,CT-rich,L1PA4"				c1p221439735FS	CTTCTCCTTCTTCTCCTTCTTCTC	c1p221439735ES	AATGTTAAATGACGAGTTAATGGG
chr1	221557383	221557875	223490760	223491252	-	4884	492	39	L1HS	"COLO2T,COLO2N"	5172	497	"L1HS,AT_rich,MER41A"		SUSD4		c1p221557629FS	ATGAATAATCCACCCCTTATTTAG	c1p221557629ES	TCATTCTCAGTAAACTATCGCAAG
chr1	222313689	222314197	224247066	224247574	+	103	508	13	noL1	"COLO2T,COLO2N"	140	515	"MLT1D,(A)n"				c1p222313943FS	AAGGTTCTCTGATGAAAAGAACAG	c1p222313943ES	AGCGAAATACAAATCCAATAAAAG
chr1	223231793	223232171	225165170	225165548	+	177	378	11	L1PA3	"COLO2T,COLO2N"	164	338	"L1PA3,L1MA5"		DNAH14		c1p223231982FS	GTACTGTTTTTCCATATGGTTGTG	c1p223231982ES	TCATTCTCAGTAGACTATCGCAAG
chr1	224571666	224572005	226505043	226505382	-	15	339	3	noL1	"COLO2T,COLO2N"	4	65	AluYg6				c1p224571835FS	TCATTGCTTACAAAAGAAAGTGTC	c1p224571835ES	GAAAATATGGCAAAGAGACAAAAG
chr1	225930816	225931129	227864193	227864506	-	217	313	4	noL1	"COLO2T,COLO2N"	178	70	L1PA4		ZNF678		c1p225930972FS	TAGACTTAAATCACCTGCCTATCC	c1p225930972ES	AACTAGAAATACCATTTGACCCAG
chr1	226124618	226125170	228057995	228058547	-	1106250	552	77	L1HS	"COLO2T,COLO2N"	1308183	545	"MSTD,L1ME3B,L1HS,LTR16A1"				c1p226124894FS	AGACCACATCCTGCTTAGTTTTC	c1p226124894ES	ACTATGTGCCTTAGTCTGTTTGTG
chr1	229674288	229674396	231607665	231607773	+	23	108	4	L1PA3	"COLO2T,COLO2N"	2	65	"(TAAAAA)n,L1PA3"				c1p229674342FS	CTTCTGCATTTTTATTCTGTGTTC	c1p229674342ES	GAACTAGTTTACAGTCCCACCAAC
chr1	229982565	229982702	231915942	231916079	+	309	137	4	L1PA2	"COLO2T,COLO2N"	2	137	"L1PA2,MER49"		"DISC1,KIAA0457"		c1p229982633FS	AATAAACATACGTGTGCATGTGTC	c1p229982633ES	TGTAAATTCCTGTCTTACCTGTCC
chr1	232240130	232240324	234173507	234173701	-	84	194	3	L1PA3	"COLO2T,COLO2N"	93	237	"L2a,L1PA3"		SLC35F3		c1p232240227FS	ATTTTAACATGAGATTTGGAGAGG	c1p232240227ES	TCATTCTCAGTAAACTATCGCAAG
chr1	233335986	233336683	235269363	235270060	-	10	697	4	noL1	"COLO2T,COLO2N"	20	698	"AluSq2,(T)n,AluSx3"				c1p233336334FS	AGATTTGGAAAGTCTTGTCTTCTG	c1p233336334ES	AGTAGCTGGGATTACAGGTGTG
chr1	233531466	233532110	235464843	235465487	-	13	644	4	noL1	"COLO2T,COLO2N"	11	1129	"AluJb,AluSx1,A-rich"		"ARID4B variant protein,ARID4B"		c1p233531788FS	AACATGGTGAAACCTTGTCTTTAC	c1p233531788ES	CTTCCTTTTCCTTGTTTCTTTG
chr1	233991642	233992225	235925019	235925602	+	33	583	4	L1PA4	"COLO2T,COLO2N"	23	589	L1PA4		LYST		c1p233991933FS	CTTTTCTCTACTTTGTCTTACCGC	c1p233991933ES	ACATACCTAAAAATTACAGGGCAG
chr1	235249130	235249423	237182507	237182800	-	4908	293	26	L1HS	"COLO2T,COLO2N"	5433	389	"L1HS,L1MEc"				c1p235249276FS	TTGATACATGTTTTATAGCCCAAG	c1p235249276ES	TCATTCTCAGTAAACTATCGCAAG
chr1	235311166	235311677	237244543	237245054	+	1852	511	13	L1HS	"COLO2T,COLO2N"	25	511	"(TA)n,L1HS,(TC)n"	LINE:Iskow	RYR2		c1p235311421FS	CCCCATTAAGAAATCACAGTTATC	c1p235311421ES	TCATTCTCAGTAAACTATCGCAAG
chr1	236918590	236919059	238851967	238852436	-	135392	469	50	L1HS	"COLO2T,COLO2N"	74424	471	"T-rich,L1HS"	LINE:dbRIP			c1p236918824FS	ATTTGTCAACTATGTGAGTGGTTG	c1p236918824ES	TGTAGATTCTGGATATTAGCCCTC
chr1	237853137	237853470	239786514	239786847	-	38147	333	19	L1HS	"COLO2T,COLO2N"	36020	738	"L1HS,L1PA5"		CHRM3		c1p237853303FS	TACAAAAGAAAGAGTCCATCACTG	c1p237853303ES	TCATTCTCAGTAAACTATCGCAAG
chr1	239125044	239125221	241058421	241058598	-	369	177	3	L1PA5	"COLO2T,COLO2N"	410	181	"L1PA5,MSTA"		RGS7		c1p239125132FS	CTAGCTCACCTTCAGAAGAATAGG	c1p239125132ES	TAGACTGGATTAAGAAAATGTGGC
chr1	239202578	239202979	241135955	241136356	+	958	401	21	L1PA2	"COLO2T,COLO2N"	426	327	"AluJb,L1PA2"		RGS7		c1p239202778FS	TATCAATATCATGAAGTAGCCAGG	c1p239202778ES	ATGATGAGTTCATGTCCTTTGTAG
chr1	240179038	240179775	242112415	242113152	+	13	737	4	noL1	"COLO2T,COLO2N"	28	736	"AluJr,L1PA8A,AluSp"				c1p240179406FS	CTTGATATCAGCAGATGGTACTTG	c1p240179406ES	GTCATGGTAACTCTAACAAGCCC
chr1	240563166	240563353	242496543	242496730	+	1750	187	13	noL1	"COLO2T,COLO2N"	2706	862		LINE:Ewing	PLD5		c1p240563259FS	AGAATGAAATCCTGTAATTTCCTG	c1p240563259ES	CAAGAGAGAGAGACAAGGAAGAAG
chr1	243799788	243799909	245733165	245733286	-	13	121	3	noL1	"COLO2T,COLO2N"	23	123	AluY		KIF26B		c1p243799848FS	TCCATCTCAAAGAAACAAATAAAC	c1p243799848ES	GAGAAAAAGACAGATGCCAGTAAC
chr1	245923090	245923239	247856467	247856616	+	299	149	4	L1HS	"COLO2T,COLO2N"	259	167	L1HS	LINE:dbRIP			c1p245923164FS	TTGTATTTGCTTTTGTGTTCAGAC	c1p245923164ES	GATGAGTTCATATCCTTTGTAGGG
chr1	246451769	246452026	248385146	248385403	+	648	257	8	L1PA2	"COLO2T,COLO2N"	116	323	LTR41B				c1p246451897FS	CTCAGTATAGGGCACTTATGGTTC	c1p246451897ES	TCATTCTCAGTAAACTATCGCAAG
chr1	247158050	247158440	249191427	249191817	+	1120	390	7	L1PA10	"COLO2T,COLO2N"	70	401	"L1PA10,LTR10C"	"LINE:Ewing,Iskow"			c1p247158245FS	GTCTTAGCTGGTAAGGTTTTGTG	c1p247158245ES	ACCCATAGATCAGGATGTAAAAAG
chr10	485804	485944	495804	495944	+	316	140	10	L1HS	"COLO2T,COLO2N"	184	139	Tigger3c		"KIAA0934,DIP2C"		c10p485874FS	CAGTTGAGCCATTGTAATTGATAC	c10p485874ES	AGAAAAGTGGTATGTGGCTTACTC
chr10	503427	503549	513427	513549	+	33	122	8	L1PA2	"COLO2T,COLO2N"	21	120	"L1PA2,L1PA7,AT_rich"		"KIAA0934,DIP2C"		c10p503488FS	TTAAGTTCTGGAGTACATGTGCAG	c10p503488ES	CAAATGTCCAACAATGATAGACTG
chr10	2593959	2594092	2603959	2604092	-	11	133	3	noL1	"COLO2T,COLO2N"	6	133					c10p2594025FS	TATAAAAATCCTGTAGTTGGCTGG	c10p2594025ES	TTAAAGGCAATTAAATGTTGTCTG
chr10	3153776	3154060	3163776	3164060	-	12	284	4	noL1	"COLO2T,COLO2N"	8	66	AluJb		PFKP		c10p3153918FS	AGTTGCTAATCTCTGACCTAGACG	c10p3153918ES	CTAACTACACGCTCCAGTTCTTTC
chr10	5283290	5283573	5293290	5293573	+	24184	283	18	L1HS	"COLO2T,COLO2N"	18071	430	"L1HS,LTR10E"				c10p5283431FS	TTCAGACAAAAAGTTCTCTCAGTG	c10p5283431ES	GATGAGTTCATATCCTTTGTAGGG
chr10	5567463	5567738	5577463	5577738	-	12	275	3	noL1	"COLO2T,COLO2N"	9	80	"AluSx1,(A)n,(TTTC)n"				c10p5567600FS	TAGGCTATCCAAATAAAAATCCTG	c10p5567600ES	CTCTTTTCACACCTACTACCTTCC
chr10	5907046	5907771	5867040	5867765	+	19	725	2	noL1	"COLO2T,COLO2N"	5	727	"AluJb,AluSc"				c10p5907408FS	GCCTGGAAAGATTAGTTTCTATTG	c10p5907408ES	CTGAGTTGGAAAGATCACTTGAG
chr10	6386960	6387367	6346954	6347361	-	41	407	4	noL1	"COLO2T,COLO2N"	109	407	"AluJo,AT_rich,FLAM_C"				c10p6387163FS	CAGTCATGAGCCACTATCTCTTAC	c10p6387163ES	TTTAAACACGAAAGAAAGAAAAGC
chr10	6451096	6451649	6411090	6411643	-	32280	553	41	L1HS	"COLO2T,COLO2N"	40568	553	L1HS	LINE:dbRIP			c10p6451372FS	TCTATTTCTTGATACCAGCAGATG	c10p6451372ES	ACACCGCATATTCTCACTCATAG
chr10	7448351	7449109	7408345	7409103	-	12	758	8	L1PA2	"COLO2T,COLO2N"	3	72	"L1PA2,MER20"		SFMBT2		c10p7448730FS	ACTCTTAACTCCAGCCATTTTATG	c10p7448730ES	GTCGACATTTGAACAGTAACAGAG
chr10	8878309	8878586	8838303	8838580	-	949	277	3	L1PA2	"COLO2T,COLO2N"	1676	277	"L1PA2,AluSc"				c10p8878447FS	TCTAAAAGGGAGTATTGAGACAGC	c10p8878447ES	CTGAAGCTGCTTAAACAATTAGTG
chr10	9914428	9914674	9874422	9874668	+	748	246	8	L1PA3	"COLO2T,COLO2N"	805	487	"L2a,L1PA3"				c10p9914551FS	TGCTAACTTTGTTCTTCATCTTTG	c10p9914551ES	TGGAAATCATCATTCTCAGTAAAC
chr10	10544440	10544646	10504434	10504640	-	118	206	4	noL1	"COLO2T,COLO2N"	1	65	(T)n				c10p10544543FS	CACTGATGATTTTTAGTTGTCAGG	c10p10544543ES	TGAGTAAACAGCAGACTCGTTATG
chr10	11813164	11813357	11773158	11773351	-	52	193	4	L1PA2	"COLO2T,COLO2N"	6	73	"L2a,MER52A"				c10p11813260FS	AGGGCTGTGATATCCTCTTTG	c10p11813260ES	TCATTCTCAGTAAACTATCGCAAG
chr10	12886914	12887444	12846908	12847438	-	168	530	8	noL1	"COLO2T,COLO2N"	348	83	"AluJo,AluSq,AluSc"		CAMK1D		c10p12887179FS	GTTCCCACTACTCAGGAAGTTG	c10p12887179ES	CTGTAATCCTAGCACTTTGGGAG
chr10	13300677	13300976	13260671	13260970	+	35	299	7	L1HS	"COLO2T,COLO2N"	48	311	"L1HS,(A)n"	LINE:dbRIP			c10p13300826FS	GTTTTTCATAATTTAAAAGGCTGG	c10p13300826ES	TCATTCTCAGTAAACTATCGCAAG
chr10	14007027	14007630	13967021	13967624	+	11	603	2	noL1	"COLO2T,COLO2N"	47	930	"AluSc8,AluSx3"		FRMD4A		c10p14007328FS	AGATCTAGACCATCCTGGCTAAC	c10p14007328ES	GAAACCCCGTCTCTACTAAAAATAC
chr10	15954426	15954946	15914420	15914940	-	19	520	3	L1PA6	"COLO2T,COLO2N"	1	65	"L1MEg,L1PA6"				c10p15954686FS	GCTGAAAAATATTAAGTTCGTTGG	c10p15954686ES	AGAAATAGGAACGCTTTTACACTG
chr10	15997556	15997795	15957550	15957789	-	26	239	8	L1PA2	"COLO2T,COLO2N"	43	232	"L1MD3,L1PA2"				c10p15997675FS	GGTCCATTAAACCTCTTTCTTTTG	c10p15997675ES	TCATTCTCAGTAAACTATCGCAAG
chr10	16145976	16146094	16105970	16106088	-	16	118	3	L1PA4	"COLO2T,COLO2N"	9	65	"L1MCa,L1PA4"				c10p16146035FS	AATTAGTTATTTCCCTTCCTCCAC	c10p16146035ES	TAAATGTCCAACAACGATAGACTG
chr10	16245065	16245678	16205059	16205672	-	23	613	6	noL1	"COLO2T,COLO2N"	34	612	L1MB4				c10p16245371FS	TTGTTCTATGTGTCTGTCTTACGG	c10p16245371ES	CACAGCTAGTACCATACTCAGTGG
chr10	16378883	16379179	16338877	16339173	+	901	296	16	noL1	"COLO2T,COLO2N"	1076	241	"GA-rich,G-rich,AluJo"				c10p16379031FS	TGGGTGTATCCTAAAATACTCAGG	c10p16379031ES	TAAATGTGATCGCTCTACAATGTC
chr10	16854598	16855237	16814592	16815231	+	26	639	4	noL1	"COLO2T,COLO2N"	11	71	"AluJb,(A)n"		RSU1		c10p16854917FS	CATAAGGTCTGGTAGGAAGAGAAG	c10p16854917ES	CAAAGCCATACATCAATAAAGAGC
chr10	19256672	19256964	19216666	19216958	+	349	292	6	noL1	"COLO2T,COLO2N"	64	277	L2c	"LINE:dbRIP,Ewing,Iskow,Stewart"			c10p19256818FS	TGAAATGTAGAAAACACTGAATGG	c10p19256818ES	GATTTTGAAAAGACGCAAGAATAG
chr10	19416926	19417562	19376920	19377556	-	84317	636	61	L1HS	"COLO2T,COLO2N"	69953	1092	"MER81,L1HS,AT_rich,(T)n"				c10p19417244FS	CTTTCTGATAGCTCACTTCCTCTC	c10p19417244ES	TAATGCTAGATGACACGTTAGTGG
chr10	19490399	19490859	19450393	19450853	+	9308	460	30	L1HS	"COLO2T,COLO2N"	7171	451	"AluSc8,L1HS,MER3,(A)n"				c10p19490629FS	TACAAAATCGTGAAAATAGTGTGG	c10p19490629ES	TCATTCTCAGTAAACTATCGCAAG
chr10	20869396	20869780	20829390	20829774	+	93	384	6	L1PA2	"COLO2T,COLO2N"	159	463	"Charlie19a,L1PA2"				c10p20869588FS	GTCCTTATTTCTTATTTTCCTGCC	c10p20869588ES	TGGAAATCATCATTCTCAGTAAAC
chr10	20901976	20902162	20861970	20862156	+	24	186	2	L1PA2	"COLO2T,COLO2N"	6	65	MLT1D				c10p20902069FS	ATGTTTTCTGTCCTCTTTGTAACC	c10p20902069ES	TAATGCTAGATGACGAGTTAGTGG
chr10	21080519	21080648	21040513	21040642	-	36	129	5	L1PA2	"COLO2T,COLO2N"	61	81	"L1MA8,L1PA2,(TTTA)n"				c10p21080583FS	ACACACCATAGTCCCATCTACTG	c10p21080583ES	TCATTCTCAGTAAACTATCGCAAG
chr10	21660398	21660608	21620392	21620602	+	16	210	3	noL1	"COLO2T,COLO2N"	3	65	AluY				c10p21660503FS	ATAAAAGATAATGTTGCCGGATG	c10p21660503ES	TTTTTAGTAGAGAAGGGGTTTCAC
chr10	21939553	21939981	21899547	21899975	-	18	428	2	noL1	"COLO2T,COLO2N"	22	428	"AT_rich,AluSq2"		"AF10/CALM,MLLT10,CALM/AF10"		c10p21939767FS	CTAGACTAGAAGCTGAGTTGGAGG	c10p21939767ES	TATTGAAAACCTAGGATTCTCTGG
chr10	22171138	22171261	22131132	22131255	+	12	123	2	L1PA4	"COLO2T,COLO2N"	13	290	L1PA4		DNAJC1		c10p22171199FS	TTTACATCTTTAAAACCTCTTGCC	c10p22171199ES	ACTGTTCACAATAGCAAAGACTTG
chr10	22452751	22452887	22412745	22412881	-	45	136	7	L1PA2	"COLO2T,COLO2N"	57	141	"L1PA2,L1PA7"				c10p22452819FS	CCAGTTGTTCCTTTCCATATTTAG	c10p22452819ES	TCATCATTCTCAGTAAACTATCGC
chr10	24010225	24010575	23970219	23970569	+	10	350	2	L1PA3	"COLO2T,COLO2N"	24	138	"L1PA3,L1MEc"				c10p24010400FS	CTATTGTGGTCAGAGAACTTGTTG	c10p24010400ES	AACTAGAAATACCATTTGACCCAG
chr10	25747395	25747647	25707389	25707641	-	10864	252	16	noL1	"COLO2T,COLO2N"	11324	321	AT_rich	"LINE:Ewing,Iskow,Stewart"	GPR158		c10p25747521FS	GCAAATATGTGTAGGGGTAATAGAG	c10p25747521ES	GCATTGTTATTAAATCTCTTGTCAAC
chr10	26317267	26317945	26277261	26277939	+	13	678	3	noL1	"COLO2T,COLO2N"	25	679	"L1PB1,AT_rich,L1ME1,AluJr"		MYO3A		c10p26317606FS	TTATAAAAATTAGCCAGGCATAGTG	c10p26317606ES	TAAGAATGATACACTGGACATTGG
chr10	27056276	27056485	27016270	27016479	-	10	209	2	noL1	"COLO2T,COLO2N"	21	211	"AluSx,polypyrimidine"		PDSS1		c10p27056380FS	CAAGATCACTCCACTGCATTC	c10p27056380ES	GGATCGAATCTTGAGAAGTATCAG
chr10	27815742	27815896	27775736	27775890	+	22	154	4	noL1	"COLO2T,COLO2N"	25	115	MIRb	"LINE:Iskow,Stewart"			c10p27815819FS	TAGTTAGGATTACAGATGTGTGCC	c10p27815819ES	ATCCTTAAGTTGTTAGAAACTGGC
chr10	28370558	28370797	28330552	28330791	+	105	239	6	L1PA4	"COLO2T,COLO2N"	66	242	"L2,L1PA4"				c10p28370677FS	ATACCGTGACTTAAGCTTTGTGAG	c10p28370677ES	TACACTATGGAATACTATGCAGCC
chr10	29751842	29752261	29711836	29712255	-	12558	419	30	L1HS	"COLO2T,COLO2N"	9658	402	"L1HS,(T)n"	LINE:dbRIP	LOC387647		c10p29752051FS	AGAACTTCTGCTCATATCCAATTC	c10p29752051ES	TCATTCTCAGTAAACTATCGCAAG
chr10	29878912	29879273	29838906	29839267	+	142	361	4	L1PA3	"COLO2T,COLO2N"	66	69	"AluJr,L1PA3,A-rich"		SVIL		c10p29879092FS	TCTAAGCATTATGTGGAAGTCAAG	c10p29879092ES	ATACACCATGGAATACTATGCAGC
chr10	31282320	31282597	31242314	31242591	+	29	277	4	L1PA2	"COLO2T,COLO2N"	52	326	"L1PA2,L1M5"		ZNF438		c10p31282458FS	TTTCAGTAGAGAAGGGATTACACC	c10p31282458ES	ATCATCATTCTCAGTAAACTGTCG
chr10	31290032	31290200	31250026	31250194	+	394	168	15	L1HS	"COLO2T,COLO2N"	366	170	"L1HS,AT_rich"		ZNF438		c10p31290116FS	AAGCTGGTAGAAGTTTCACAAATC	c10p31290116ES	TCCTCCAATTTTGTTCTTTTACTC
chr10	31804189	31804462	31764183	31764456	+	118	273	2	L1PA3	"COLO2T,COLO2N"	185	81	L1PB4		ZEB1		c10p31804325FS	GTGATGAATTCTCTCTATGTGTGC	c10p31804325ES	TCATTCTCAGTAAACTATCGCAAG
chr10	32969397	32969855	32929391	32929849	-	2063	458	19	L1HS	"COLO2T,COLO2N"	1350	593	"L1HS,L1PA4"		C10orf68		c10p32969626FS	CAGCTCTTCTTGTTAAATTGATCC	c10p32969626ES	CCAAGACACATAATTGTCAGATTC
chr10	33839433	33839825	33799427	33799819	-	19667	392	33	L1HS	"COLO2T,COLO2N"	23583	457	"L1HS,AluSx1,(T)n"				c10p33839629FS	AAAGATGTGATTTCTTCTGTTTCC	c10p33839629ES	GATGAGTTCATATCCTTTGTAGGG
chr10	34777834	34778363	34737828	34738357	-	16	529	2	noL1	"COLO2T,COLO2N"	9	65	"L1MA9,AluY"		PARD3		c10p34778098FS	CATGTATAGTCCTAGCTACCAGGG	c10p34778098ES	ATTAACTCGTCATTTAGCGTTAGG
chr10	35312238	35312841	35272232	35272835	-	20	603	3	noL1	"COLO2T,COLO2N"	29	67	"AluJo,L1ME3B,AluSq2,AluSx3"				c10p35312539FS	AAAGATACAAATAATTAGCTGGGC	c10p35312539ES	CTGTAGTCCTAGCTACTCAGGAGG
chr10	36336871	36337054	36296865	36297048	-	264	183	4	L1PA4	"COLO2T,COLO2N"	213	178	"AT_rich,L1PA4"				c10p36336962FS	ACGATATTGAAGCACACTCTCAC	c10p36336962ES	AACCCAAATATCCAACAATGATAG
chr10	36446804	36447092	36406798	36407086	-	11	288	3	noL1	"COLO2T,COLO2N"	35	261	T-rich				c10p36446948FS	TGTGAGACTGGAATTTTGTTTATC	c10p36446948ES	TAATCAATCTAGTCGAGGTGACAG
chr10	37367228	37367680	37327222	37327674	-	14	452	2	L1PA3	"COLO2T,COLO2N"	4	65	"AT_rich,L1PA5"				c10p37367454FS	TAACACAGGGTAGAATTTGTTCTG	c10p37367454ES	AACACTGCATGTTCTCACTCATAG
chr10	37539859	37540400	37499853	37500394	-	16	541	3	L1PA4	"COLO2T,COLO2N"	15	541	"L1PA4,L1PA7"		ANKRD30A		c10p37540129FS	CTTGTACATTCTGGATATTAGCCC	c10p37540129ES	AACTAGAAATACCATTTGACCCAG
chr10	38231921	38232270	38191915	38192264	+	194	349	4	L1PA2	"COLO2T,COLO2N"	255	436	L1PA2				c10p38232095FS	TGACACATTTCCTTTAACACAATC	c10p38232095ES	ATCATCATTCTCAGTAAACTGTCG
chr10	38591661	38591944	38551655	38551938	-	24882	283	34	L1HS	"COLO2T,COLO2N"	32792	330	L1HS				c10p38591802FS	TCATATGTGGGAACTAAAAATGTG	c10p38591802ES	GATGAGTTCATATCCTTTGTAGGG
chr10	39090940	39091205	39050934	39051199	-	11	265	3	noL1	"COLO2T,COLO2N"	5	265	L1ME4a	"LINE:Ewing,Iskow"			c10p39091072FS	GGCATTATGAAATGAAATTGACTC	c10p39091072ES	AAAATTTTGGAAGCAATCTAAATG
chr10	41718732	41719476	42398726	42399470	+	34	744	3	noL1	"COLO2T,COLO2N"	20	65	ALR/Alpha				c10p41719104FS	CACTTGCAGACTTTACAAACAGAG	c10p41719104ES	AGATTTGAGACCAATGGTAGAAAG
chr10	42609809	42610274	43289803	43290268	-	2700	465	10	L1PA3	"COLO2T,COLO2N"	3595	220	L1PA3		BMS1		c10p42610041FS	ACATTACAAGGGAGTCTTTTCTTG	c10p42610041ES	TGGAAATCATCATTCTCAGTAAAC
chr10	43854719	43855023	44534713	44535017	+	386	304	10	L1PA3	"COLO2T,COLO2N"	276	279	"(TAA)n,L1PA3"				c10p43854871FS	TCTCTCAGGACAATACAATCACAC	c10p43854871ES	GACTGGATTAAGAAAATATGGCAC
chr10	43958270	43958403	44638264	44638397	+	20	133	3	L1PA4	"COLO2T,COLO2N"	10	144	"AT_rich,L1PA4"				c10p43958336FS	AGTGAACCAAAAAGTTTCATTAGC	c10p43958336ES	TAGCCTAGTTAAAGAAAATGTGGC
chr10	44037235	44037645	44717229	44717639	-	7983	410	15	L1HS	"COLO2T,COLO2N"	3886	266	"L1ME3A,L1HS"				c10p44037440FS	GTGTTGTGTTTGTTTGCTTTTTAG	c10p44037440ES	TCATTCTCAGTAAACTATCGCAAG
chr10	44505550	44505767	45185544	45185761	-	13	217	3	noL1	"COLO2T,COLO2N"	82	67	L1M4b				c10p44505658FS	GCTACTAGAATTTCCATTTGCTTC	c10p44505658ES	GCTAGCCTAAGGTTGTTACTCTTG
chr10	44842382	44842704	45522376	45522698	+	355	322	14	L1PA3	"COLO2T,COLO2N"	544	314	MER91A		BC026193		c10p44842543FS	ATCCTAATTGGAACATACCATCTG	c10p44842543ES	GAGGGATAGCATTGGGAGATATAC
chr10	51708025	51708140	52038019	52038134	-	13	115	2	noL1	COLO2T	0	0	(T)n				c10p51708082FS	CTTCCTCTGAATCAATGTGTACTG	c10p51708082ES	TTCCCAGTTATAGGAAATAGCATC
chr10	52852175	52852514	53182169	53182508	-	1171	339	8	noL1	COLO2T	0	0			PRKG1		c10p52852344FS	AAAGTGTTCTGGTTTGGTTAAGAG	c10p52852344ES	CTCTTCAAACCACTATTATTTGGC
chr10	53109064	53109534	53439058	53439528	-	31045	470	33	L1HS	"COLO2T,COLO2N"	68011	500	"T-rich,L2c,MER51C,L1HS"		PRKG1		c10p53109299FS	TTCCTCCCTTATTTTTAACTGTTG	c10p53109299ES	TGTAGGTAGAGTAGCCTTTGATCC
chr10	53610707	53611244	53940701	53941238	-	137	537	7	L1HS	"COLO2T,COLO2N"	155	360	"L1HS,MSTB,L1MA5A"		PRKG1		c10p53610975FS	GTCAGGCTGTTTCTCAGGTTAG	c10p53610975ES	GAGGGATAGCTTTGGGAGATATAC
chr10	53669105	53669307	53999099	53999301	+	169	202	3	L1PA2	"COLO2T,COLO2N"	342	247	"(TAAAAA)n,AT_rich,(A)n"		"CR603327,PRKG1"		c10p53669206FS	AATATTAGAAACTGGTGCCTTTCC	c10p53669206ES	TCATTCTCAGTAAACTATCGCAAG
chr10	53720671	53721066	54050665	54051060	-	141	395	7	L1PA3	"COLO2T,COLO2N"	155	395	"L1PA3,AT_rich,AluSz"		"CR603327,PRKG1"		c10p53720868FS	CTTACAGTGAGCTGTGATTGTACC	c10p53720868ES	CATAAAAATGATGAGTTCATGTCC
chr10	53833580	53833908	54163574	54163902	-	388	328	11	L1PA3	"COLO2T,COLO2N"	488	324	"L1PA3,L1PA15"				c10p53833744FS	GTTTAGCTCCCTTTCATATAGCTG	c10p53833744ES	TCATTCTCAGTAAACTATCGCAAG
chr10	55883399	55883550	56213393	56213544	+	81	151	7	L1PA4	"COLO2T,COLO2N"	76	100	"MLT1C,L1PA4"		PCDH15		c10p55883474FS	CATTTATATTTCAGACCTATTGGAAAG	c10p55883474ES	ATGTTTATCACGGCACTATTCAC
chr10	57037615	57038064	57367609	57368058	+	6819	449	48	L1PA3	"COLO2T,COLO2N"	8345	449	"G-rich,L1PA3,(GA)n,(GGAA)n"		PCDH15		c10p57037839FS	GAGATGAGACTCTTTCTTGAGTCC	c10p57037839ES	TTGATGAGTTCATGTCCTTTGTAG
chr10	58435697	58435991	58765691	58765985	+	224	294	7	L1PA3	"COLO2T,COLO2N"	251	284	"L1MB8,L1PA3"				c10p58435844FS	CAGGGTTTCAACCACTAATTTATC	c10p58435844ES	TCATTCTCAGTAAACTATCGCAAG
chr10	58533188	58533616	58863182	58863610	-	4131	428	17	L1HS	"COLO2T,COLO2N"	1470	424	"PRIMA4-int,L1HS,MER4C"				c10p58533402FS	GTTCTGTGGCAGAATAAACCTAAG	c10p58533402ES	GATTTAATGGGCATAAGTTGTAGG
chr10	59178925	59179176	59508919	59509170	+	172	251	4	noL1	"COLO2T,COLO2N"	947	251	L1PA10	"LINE:dbRIP,Ewing"			c10p59179050FS	CCATTTTAAAAGTCATATGGAACC	c10p59179050ES	AATGGTCGAACTAATTTACATTCC
chr10	60964138	60964278	61294132	61294272	+	10	140	3	L1PA6	"COLO2T,COLO2N"	30	319					c10p60964208FS	TATAAAGGGTGAAAGCTTGAGTTC	c10p60964208ES	AATACTCTGCAGCCATATAAGAGG
chr10	61667316	61667416	61997310	61997410	-	11	100	2	L1PA3	COLO2T	0	0	"L1PA3,AT_rich"		ANK3		c10p61667366FS	AGGACTATTTGGTTTGAGTGAAAG	c10p61667366ES	TAGGGTTTTTAAACAAACGTCTTC
chr10	62128639	62128826	62458633	62458820	+	21	187	2	L1PA3	COLO2T	0	0	"(TAA)n,L1PA3,L1PB1"		ANK3		c10p62128732FS	TACTTGAATAAAACAGGGTTCAGC	c10p62128732ES	CAAATGTCCAACAATGATAGACTG
chr10	64032438	64032558	64362432	64362552	-	16	120	2	L1PA2	"COLO2T,COLO2N"	21	130	L1PA2		ZNF365		c10p64032498FS	TTGGATAGAAAAAGCTCTAAGTGG	c10p64032498ES	AAAATGTCCAACAATGATAGACTG
chr10	64060487	64060672	64390481	64390666	+	67	185	4	L1PA3	"COLO2T,COLO2N"	95	215			ZNF365		c10p64060579FS	ACTCCTGATCTCTCACTCAAATTC	c10p64060579ES	AACACTGCATGTTCTCACTCATAG
chr10	65556134	65556296	65886128	65886290	+	44	162	5	L1PA3	"COLO2T,COLO2N"	20	119	MLT1C				c10p65556215FS	TCCTAGAATTAAACTGAAAGGTGG	c10p65556215ES	TCATTCTCAGTAAACTATCGCAAG
chr10	66522196	66522627	66852190	66852621	+	41	431	2	L1PA4	"COLO2T,COLO2N"	104	433	"AluYa5,L1PA4"	Alu:dbRIP			c10p66522411FS	GGATTTCTTAAGTTTACTTCTTCGC	c10p66522411ES	GTAATCCCAGCACTTTGGGAG
chr10	67085771	67086207	67415765	67416201	+	685	436	20	L1PA15	"COLO2T,COLO2N"	1079	441	"L1PA15,L1PA4"				c10p67085989FS	TGTTTTTGTTGCAAAGACTTTTAG	c10p67085989ES	GATGAGTTTATGTCCTTTGTAGGG
chr10	68619378	68619553	68949372	68949547	+	99	175	5	noL1	"COLO2T,COLO2N"	161	167		"LINE:Ewing,Iskow"	CTNNA3		c10p68619465FS	CATGATCTCAGTCTTCTCAAAATG	c10p68619465ES	AAAGAATCTAACTCGGACACAGAG
chr10	68735093	68735502	69065087	69065496	+	1801	409	43	L1HS	"COLO2T,COLO2N"	931	305	"(TAAA)n,L1HS,L2"		CTNNA3		c10p68735297FS	CCATAGACCAATATCTCCTCAAAC	c10p68735297ES	GAAACCCCGTCTCTACTAAAAATAC
chr10	68996937	68997197	69326931	69327191	+	139	260	3	L1PA3	"COLO2T,COLO2N"	4	65	"L1PA3,L1PB4"		CTNNA3		c10p68997067FS	TACAATTAAAAATAGATGGGAGGC	c10p68997067ES	TCATTCTCAGTAAACTATCGCAAG
chr10	70303324	70303466	70633318	70633460	-	423	142	5	noL1	"COLO2T,COLO2N"	760	75	"AT_rich,AluSg"		STOX1		c10p70303395FS	GATTCTTTTACTTCTGAGACGGAG	c10p70303395ES	TCTGCAATTTTTCTTAAACTCAGG
chr10	70350529	70350743	70680523	70680737	+	10	214	4	noL1	"COLO2T,COLO2N"	21	67	AluSx1		DDX50		c10p70350636FS	ACCTTATTTGGACTCAGATTCAAG	c10p70350636ES	TAAGACTTTGAAAATGTGATCTGG
chr10	71616976	71617087	71946970	71947081	-	17	111	4	L1PA4	"COLO2T,COLO2N"	17	65	"AluY,L1PA4"				c10p71617031FS	AAAGGTGAATCACTAGAGACTGAATAC	c10p71617031ES	ATGATGAGTTCATGTCCTTTGTAG
chr10	72464902	72465178	72794896	72795172	+	1768	276	28	L1PA3	"COLO2T,COLO2N"	1244	476	"L1PA3,L3"				c10p72465040FS	ACTAAGTGTCAAAGACTTGGGTTC	c10p72465040ES	TCATTCTCAGTAAACTATCGCAAG
chr10	78021463	78021872	78351457	78351866	+	123062	409	25	L1HS	"COLO2T,COLO2N"	153466	411	"L1PBa,L1HS"				c10p78021667FS	AAAAACCACTTGTACCTCTACAGC	c10p78021667ES	TCATTCTCAGTAAACTATCGCAAG
chr10	78247276	78247570	78577270	78577564	+	24	294	5	L1PA4	"COLO2T,COLO2N"	11	302	L1PA4				c10p78247423FS	AAAAAGTGAGCAAAGGATATGAAC	c10p78247423ES	AACACCACATGTTCTCACTCATAG
chr10	78262028	78262324	78592022	78592318	-	4347	296	22	L1HS	"COLO2T,COLO2N"	4097	299	"L1HS,AT_rich"				c10p78262176FS	AATTATAAGCACGCAAAGTAGCTC	c10p78262176ES	TCATTCTCAGTAAACTATCGCAAG
chr10	81715034	81715350	81725054	81725370	-	186757	316	85	L1HS	"COLO2T,COLO2N"	123616	466	"L1HS,AT_rich,HERVH-int"				c10p81715192FS	ACCAGCCTTTATTAGTCAAATCAC	c10p81715192ES	TCATTCTCAGTAAACTATCGCAAG
chr10	82167478	82167820	82177498	82177840	-	36	342	6	L1PA17	"COLO2T,COLO2N"	106	342	"AluJo,L1PA17"		C10orf58		c10p82167649FS	GTCTTATTTACAGGAGAAGCAAGG	c10p82167649ES	TCCTAAGTGAACTAACCCAGAAAC
chr10	82438507	82438636	82448527	82448656	-	1515	129	27	L1PA4	"COLO2T,COLO2N"	3333	130	"(T)n,L1PA4"				c10p82438571FS	AATGTTAGGTGCATTTATGATGTG	c10p82438571ES	CAAGTTACTGGAGCTAAAGCAGTC
chr10	82472064	82472274	82482084	82482294	-	18	210	2	L1PA2	"COLO2T,COLO2N"	72	219	L1PA2				c10p82472169FS	TTTTACTGGTCAAAGCAGTTACAG	c10p82472169ES	TCATTCTCAGTAAACTATCGCAAG
chr10	83166037	83166382	83176057	83176402	-	198	345	3	L1PA3	"COLO2T,COLO2N"	273	345	"L1PA3,MIR3"				c10p83166209FS	CAATTGTGTCTGCTAGTAACCATC	c10p83166209ES	GATGAGTTTATGTCCTTTGTAGGG
chr10	83606172	83606560	83616192	83616580	-	1571215	388	109	L1HS	"COLO2T,COLO2N"	1221886	362	"(TA)n,L1HS,L1MB7"				c10p83606366FS	TGTCTGTTTCTCTTTTCAATTCTG	c10p83606366ES	TCATTCTCAGTAAACTATCGCAAG
chr10	85466560	85466779	85476580	85476799	-	213	219	7	L1PA4	"COLO2T,COLO2N"	29	218					c10p85466669FS	TCTCTAAGATTAGACCCAGGAATG	c10p85466669ES	TATACACCGTGGAATACTATGCAG
chr10	85468381	85468875	85478401	85478895	+	42253	494	54	L1HS	"COLO2T,COLO2N"	42327	494	"L1MC,L1HS,AT_rich,AluJb"				c10p85468628FS	CTGTAGTCCTAGCTACTCAGGAGG	c10p85468628ES	TCATTCTCAGTAAACTATCGCAAG
chr10	85936474	85936825	85946494	85946845	+	64	351	2	noL1	COLO2T	0	0	(TG)n				c10p85936649FS	CTGACTTCTCCTTCAACACTCAAG	c10p85936649ES	GTGTATGTGAGGGTACAGGATTTG
chr10	87111309	87111720	87121329	87121740	+	1266	411	16	L1HS	"COLO2T,COLO2N"	3017	412	"L1M2,(A)n,AluSc"				c10p87111514FS	TAAAGAAGGTTGCTTAGCTTTCTC	c10p87111514ES	TGGGAGATATACCTAATGCTAGATG
chr10	87495451	87495700	87505471	87505720	+	1143	249	20	L1PA2	"COLO2T,COLO2N"	2039	263	"MLT1H1-int,L1PA2"		"GRID1,KIAA1220"		c10p87495575FS	TGACCCAAAGTCTAGGATCTTATC	c10p87495575ES	TCATTCTCAGTAAACTATCGCAAG
chr10	91095416	91095533	91105436	91105553	+	39	117	4	noL1	"COLO2T,COLO2N"	46	117	L1MEg		LIPA		c10p91095474FS	GGGTTAAAAAGTCAAATTATAGGC	c10p91095474ES	AAAAATACAAAAATTAGCCAGGTG
chr10	91290607	91290717	91300627	91300737	-	107	110	7	noL1	"COLO2T,COLO2N"	62	72	"AluY,MIRc"				c10p91290662FS	TGAGCACTTTCTTAGACTTTAGCC	c10p91290662ES	TATAGATGAGAAATCTGAGGCTCG
chr10	91489394	91490036	91499414	91500056	-	79	642	4	noL1	"COLO2T,COLO2N"	220	639	"MER21C,L1ME3E,L1M5"		KIF20B		c10p91489715FS	TACCTTCACAGCATCAAATGTTAC	c10p91489715ES	ATCCCTTCTATTTGTCTGTTCTTG
chr10	91513398	91513602	91523418	91523622	-	35	204	4	L1PA3	"COLO2T,COLO2N"	56	204	(TTA)n		KIF20B		c10p91513500FS	ACTTAGTCACTTTCCCTGTATTGG	c10p91513500ES	ATGATGAGTTCATGTCCTTTGTAG
chr10	91707201	91707628	91717221	91717648	-	2216	427	10	noL1	"COLO2T,COLO2N"	4950	343	"MamRep605,MER58A"	"LINE:Beck,Ewing,Iskow,Stewart"			c10p91707414FS	ACCAGAGATGTTTCAGACTTTTTC	c10p91707414ES	TAATCAGATTGAACACCAACTGAC
chr10	92273466	92273718	92283486	92283738	-	21	252	3	noL1	"COLO2T,COLO2N"	42	248	L1MA3				c10p92273592FS	TTGATTTTCTATCTCAATGGTGTG	c10p92273592ES	TCATCTGAAGTAAAAACTCACTGG
chr10	93585010	93585405	93595030	93595425	-	22	395	8	noL1	"COLO2T,COLO2N"	103	398	"AluSq2,AluSx3,L1M5"		TNKS2		c10p93585207FS	AAAGTCTCATCAGTGTAGCTCTCC	c10p93585207ES	AAGACATGAACAAGAAATTCACAC
chr10	94141596	94141917	94151616	94151937	-	15	321	3	noL1	"COLO2T,COLO2N"	6	320	"AluSx4,AluSx,L1MC4a"				c10p94141756FS	TAAGGAAATTGGAAAACTAAATGC	c10p94141756ES	AAAATACAAAATTACCCAGGTGTG
chr10	94357792	94357937	94367812	94367957	-	46	145	9	noL1	"COLO2T,COLO2N"	117	143	"FLAM_A,A-rich"		KIF11		c10p94357864FS	AGAACCAATACTGGAAGAAAGTTG	c10p94357864ES	ATGTACCTGTAGTCCCAGCTACTC
chr10	95917090	95917339	95927100	95927349	-	78	249	5	L1PA4	"COLO2T,COLO2N"	76	106	"L2a,L1PA4"		PLCE1		c10p95917214FS	TCTAGTTAAGATATGCTATGTGGGC	c10p95917214ES	AACATGATGAAACCCTGTCTCTAC
chr10	96574586	96574700	96584596	96584710	-	207	114	3	noL1	"COLO2T,COLO2N"	48	422	L1PA2		CYP2C19		c10p96574643FS	TGAATGTATTTTCAGAAGAAGCTG	c10p96574643ES	ATTAAAAAGTCAGGAAACAACAGG
chr10	96903261	96903883	96913271	96913893	+	15	622	4	L1PA3	"COLO2T,COLO2N"	14	486	"L1PA3,L1PA4"				c10p96903572FS	CTCTGATGGCACTATGTATTTCTG	c10p96903572ES	TAATGCTAGATGACGAGTTAGTGG
chr10	96912962	96913164	96922972	96923174	-	15	202	2	L1PA4	"COLO2T,COLO2N"	3	65	L1P1				c10p96913063FS	CTGGTCTCATAAAATGAGTTAGGG	c10p96913063ES	AACACCACATGTTCTCACTCATAG
chr10	97699366	97699840	97709376	97709850	+	19157	474	22	L1HS	"COLO2T,COLO2N"	31470	464	L1HS		"AK096469,AK091396"		c10p97699603FS	GGATATATTTAAAGCTTTCTCCCC	c10p97699603ES	TCATTCTCAGTAAACTATCGCAAG
chr10	99969732	99970197	99979742	99980207	-	888	465	23	L1PA2	"COLO2T,COLO2N"	974	377	"L1M2,L1PA2"		"C10orf28,GIDRP88"		c10p99969964FS	AATTCTTGGTCTTTGACTTTTGAC	c10p99969964ES	TCATTCTCAGTAAACTATCGCAAG
chr10	100294447	100294660	100304457	100304670	+	55457	213	22	L1PA3	"COLO2T,COLO2N"	109242	220	"L1PA3,AluY"		HPSE2		c10p100294553FS	TATTGATTATTGCCACAATTTCAG	c10p100294553ES	AAATTTATAGCACTAAATGCCCAC
chr10	100532545	100532739	100542555	100542749	-	907	194	20	L1HS	"COLO2T,COLO2N"	1315	89	"L1HS,AT_rich,FordPrefect"		HPSE2		c10p100532642FS	ATATGGTAAAAATAGCAATTCCCC	c10p100532642ES	TCATTCTCAGTAAACTATCGCAAG
chr10	100710278	100710546	100720288	100720556	-	10296	268	40	L1HS	"COLO2T,COLO2N"	5378	266	"L1HS,(T)n,MER113"		HPSE2		c10p100710412FS	TTCTGATTTGTTAAGAAGCATGTC	c10p100710412ES	GATGAGTTCATATCCTTTGTAGGG
chr10	101523325	101523746	101533335	101533756	+	9404	421	36	L1HS	"COLO2T,COLO2N"	2886	538	"L1HS,AluJo,(TAAAA)n"				c10p101523535FS	GGTTAATTGCAGAAGAGCTAGAAG	c10p101523535ES	TCATTCTCAGTAAACTATCGCAAG
chr10	103124483	103124730	103134493	103134740	+	10	247	6	L1PA2	"COLO2T,COLO2N"	12	83	L1PA2		"FBW1A,BTRC"		c10p103124606FS	CACACACTTTTAAACAACCAGAAC	c10p103124606ES	TAGACTGGATTAAGAAAATGTGGC
chr10	105389338	105390095	105399348	105400105	+	13	757	4	noL1	"COLO2T,COLO2N"	14	757	"AluSx,L3,AluSc"		SH3PXD2A		c10p105389716FS	ACCCTCCTCAGGAAAGAGACTTAG	c10p105389716ES	GCCTGTAGTCCCAGCTACTTG
chr10	106277803	106278119	106287813	106288129	-	48	316	5	L1PA3	"COLO2T,COLO2N"	29	316	"L1PA3,MLT1J,(TTTC)n"				c10p106277961FS	ATGCTGTTTATTCTCCACTTATCC	c10p106277961ES	GATAAGTTCATGTCCTTTGTAGGG
chr10	107126601	107127147	107136611	107137157	-	153399	546	46	L1HS	"COLO2T,COLO2N"	309111	548	"HAL1,L1HS"				c10p107126874FS	TAGTGTTCCCTAGAATGAAACCTC	c10p107126874ES	TGGGAGATATACCTAATGCTAGATG
chr10	107305988	107306150	107315998	107316160	+	191	162	6	L1PA3	"COLO2T,COLO2N"	135	165	"AT_rich,MLT1B"				c10p107306069FS	ATAAGGCTCTTATCACTCCAGATG	c10p107306069ES	ATCATGTGTTCATGTCCTTTGTAG
chr10	107524938	107525325	107534948	107535335	-	991	387	10	L1HS	"COLO2T,COLO2N"	1006	389	"L1HS,MIRc"				c10p107525131FS	ATTCTATAGAGCAAATGGTTCTGG	c10p107525131ES	GATGAGTTCATATCCTTTGTAGGG
chr10	109082540	109082722	109092550	109092732	-	10	182	2	L1PA2	"COLO2T,COLO2N"	3	65	"L1PA2,L1MA4"				c10p109082631FS	CTGCAAATGACAAGATTTCACTC	c10p109082631ES	AATAGAAAAATTAGCTGTGCATGG
chr10	109217486	109217774	109227496	109227784	+	63	288	2	L1PA2	"COLO2T,COLO2N"	69	67	L1PA2				c10p109217630FS	CAGTTGTTCTGCAAGTTTTGTAAG	c10p109217630ES	GTGGGACTGTAAACTAATTCAACC
chr10	109255781	109256285	109265791	109266295	+	12320	504	27	L1HS	"COLO2T,COLO2N"	11784	602	"L1HS,LTR16E1"				c10p109256033FS	ACATAAGAGCTGGTGAATAGAAGG	c10p109256033ES	TCATTCTCAGTAAACTATCGCAAG
chr10	109729790	109730239	109739800	109740249	+	20	449	4	noL1	"COLO2T,COLO2N"	64	455	"(TTTTA)n,AT_rich,AluYa5"				c10p109730014FS	TGGAAAGGCTATTATTCTCTTCAG	c10p109730014ES	GAGAATCTTGCTATTAATATCGCTG
chr10	110443472	110444037	110453482	110454047	+	114426	565	26	noL1	"COLO2T,COLO2N"	79879	389	"L1M4c,L1P2"	"LINE:Ewing,Iskow"			c10p110443754FS	ACCACTGATCTCTTTAGAGCTGTC	c10p110443754ES	TGCCACATTATTAGTTCAGATGTC
chr10	110836756	110837423	110846766	110847433	+	586	667	21	L1HS	"COLO2T,COLO2N"	668	666	"C-rich,L1HS,(T)n"				c10p110837089FS	ATAAAATGCTTAATCTGCTGACTC	c10p110837089ES	TGGGAGATATACCTAATGCTAGATG
chr10	111067854	111068288	111077864	111078298	-	551	434	11	L1HS	"COLO2T,COLO2N"	31	707	"L1HS,MIRb"				c10p111068071FS	ATATCATGTTCCCAAGTTTTTACG	c10p111068071ES	TCATTCTCAGTAAACTATCGCAAG
chr10	111562105	111562232	111572115	111572242	-	14427	127	52	L1HS	"COLO2T,COLO2N"	10597	127	"L1HS,(T)n"	LINE:dbRIP			c10p111562168FS	AGATCATTTGAGGTCAGGAGTTC	c10p111562168ES	GATGAGTTCATATCCTTTGTAGGG
chr10	112731163	112731591	112741173	112741601	-	881	428	11	L1PA3	"COLO2T,COLO2N"	1870	442	"L1MC,L1MCa"		SHOC2		c10p112731377FS	AATGGTGAAATTTTATAAGCAAGC	c10p112731377ES	AATGCTAGATGACAAGTTAGTGGG
chr10	112979934	112980316	112989944	112990326	+	13	382	5	L1PA4	"COLO2T,COLO2N"	7	65	"(TAA)n,(GAA)n,L1PA4"				c10p112980125FS	CTTAAGAAGTTCTGCTGTTTTTCC	c10p112980125ES	AACAATAAGAACACATGGACACAG
chr10	113077761	113078328	113087771	113088338	+	13	567	2	noL1	"COLO2T,COLO2N"	18	567	"(TG)n,L1PB4,AT_rich"				c10p113078044FS	ACAGCAAAGTCTGGGACTATTATC	c10p113078044ES	AAAAATACAAAAATTAGCTGGGTG
chr10	113685931	113686102	113695941	113696112	+	34	171	4	L1PA4	"COLO2T,COLO2N"	132	171	"LTR33A,L1PA4"				c10p113686016FS	GTCCAGTAGAGAAACAGGACATTC	c10p113686016ES	CCACCCTAAAGACATCATTTTAAC
chr10	113818149	113818295	113828159	113828305	+	21	146	3	L1PA2	"COLO2T,COLO2N"	15	82	"(TAAA)n,L1PA2"				c10p113818222FS	TCTTGGCTATTACATCGTCTGTAG	c10p113818222ES	CAAATGTCCAACAATGATAGACTG
chr10	113956532	113956751	113966542	113966761	+	582	219	7	L1PA2	"COLO2T,COLO2N"	485	219	"L2a,L1PA2"				c10p113956641FS	ACCTATGCAAGTCTCTTTATCTCC	c10p113956641ES	GATAAGTTCATGTCCTTTGTAGGG
chr10	116538036	116538191	116548046	116548201	+	10	155	2	noL1	"COLO2T,COLO2N"	25	156	"SVA_D,(TAAA)n"				c10p116538113FS	GTTTTGTTTTGTTTTGTTTGTTTG	c10p116538113ES	TAGAAAGAGGTAGACATGGGAGAC
chr10	116736795	116736962	116746805	116746972	-	18	167	2	noL1	"COLO2T,COLO2N"	1	65	L1MCc				c10p116736878FS	TGCTTTACACTGTCAGTTACCTTC	c10p116736878ES	AAAGACAAAGGATTTCTTCAACAG
chr10	116960657	116961052	116970667	116971062	-	17	395	3	L1PA2	"COLO2T,COLO2N"	11	394	"L1MDa,L1PA2"		ATRNL1		c10p116960854FS	CTTTTTCTCTTTACTTGCTTCCTG	c10p116960854ES	AGCCAGAGTGAAATGACAAATTAC
chr10	119582250	119582379	119592260	119592389	-	17	129	2	L1PA2	"COLO2T,COLO2N"	40	270	"(TTTA)n,MER5B"				c10p119582314FS	GGTATTAAATAGGGTTTGTTGCTC	c10p119582314ES	CAAATGTCCAACAATGATAGACTG
chr10	121025369	121025603	121035379	121035613	-	260	234	5	L1PA3	"COLO2T,COLO2N"	311	234			GRK5		c10p121025486FS	ACATACAGTGAACCCTTTATTTCC	c10p121025486ES	ACAATGAGAACACATAGACACAGG
chr10	124447298	124447511	124457308	124457521	-	10	213	2	noL1	COLO2T	0	0			C10orf120	C10orf120.L	c10p124447404FS	AATTAATGATTGTCGTTTTAAGCC	c10p124447404ES	TAAAAAGAAACATTCCTCTCCTTG
chr10	127735959	127736096	127745969	127746106	+	211	137	4	L1HS	"COLO2T,COLO2N"	154	157	(A)n	LINE:dbRIP	ADAM12		c10p127736027FS	CTGCCATTAGATAGGAAAGTTAGC	c10p127736027ES	GAACTAGTTTACAGTCCCACCAAC
chr10	129525687	129525910	129635697	129635920	-	4322	223	17	L1PA10	COLO2T	0	0					c10p129525798FS	AGTGGAGAAATGCTGATTAAGTTG	c10p129525798ES	TAAGACCACACATCTACAACCATC
chr10	133388433	133388994	133538443	133539004	+	4445	561	28	L1HS	"COLO2T,COLO2N"	4805	541	"L1HS,AT_rich,L1MC4"				c10p133388713FS	TCAAGGAGAGAGAGAGAGAGAGAC	c10p133388713ES	TAATGCTAGATGACACGTTAGTGG
chr11	3435447	3435549	3478871	3478973	+	683	102	5	noL1	"COLO2T,COLO2N"	509	73	AluSz				c11p3435498FS	TCGTATCTTTCCTTCCTTAATCAG	c11p3435498ES	ACATAGTGAGACCCCGTTTCTAC
chr11	4241451	4241589	4284875	4285013	+	10	138	3	noL1	COLO2T	0	0	L1PA4				c11p4241520FS	CTCTCTTCTGGCTTGTAGAGTTTC	c11p4241520ES	AGTATCTTCAAATGCTCCTGAGAG
chr11	4599265	4599648	4642689	4643072	+	733	383	14	L1PA2	"COLO2T,COLO2N"	1244	383	"LTR71B,L1PA2,MER57B2"				c11p4599456FS	TCGAATTTTAATCCCACTTCTAAC	c11p4599456ES	TCATTCTCAGTAAACTATCGCAAG
chr11	5899329	5899823	5942753	5943247	+	188	494	5	L1PA4	"COLO2T,COLO2N"	354	231	"L1MEf,L1PA4"		TRIM5		c11p5899576FS	AGTAATCTTGAATTTGGTCTTTGG	c11p5899576ES	CTAGAAATACCATTTGACCTAGCC
chr11	5978148	5978494	6021572	6021918	+	49	346	4	L1PA4	"COLO2T,COLO2N"	10	124	L1PA4				c11p5978321FS	TTGTACTGAAGCTTATCTTTGCTG	c11p5978321ES	AACTAGAAATACCATTTGACCCAG
chr11	6150871	6151468	6194295	6194892	+	19301	597	48	L1HS	"COLO2T,COLO2N"	8628	403	"L1HS,A-rich,(CAT)n"				c11p6151169FS	AAATAGAGCTGGTTAGGAAGTCTG	c11p6151169ES	TAATGCTAGATGACACGTTAGTGG
chr11	7210809	7211241	7254233	7254665	-	29659	432	39	L1HS	"COLO2T,COLO2N"	31790	553	"L1HS,(T)n"				c11p7211025FS	TCCTAAGAAACTTTGAACCAAAAG	c11p7211025ES	TCACTCTCAGTAAACTATCGCAAG
chr11	7718557	7718779	7761981	7762203	+	27	222	5	L1PA2	"COLO2T,COLO2N"	129	296	"L1M3,L1PA2"				c11p7718668FS	TTTGAAACTTCCTTCATTCTTTTC	c11p7718668ES	CAAATGTCCAACAATGATAGACTG
chr11	8123272	8123598	8166696	8167022	+	58	326	7	L1PA2	"COLO2T,COLO2N"	100	71	L1PA2		RIC3		c11p8123435FS	TTTTCATACATGCCTGTTTATTTG	c11p8123435ES	TCATTCTCAGTAAACTATCGCAAG
chr11	9539830	9539941	9583254	9583365	-	13	111	3	noL1	"COLO2T,COLO2N"	13	111	L1M1				c11p9539885FS	GAAAGTCTTTACTTCTCCTTCACG	c11p9539885ES	ACTGAAGTCTCTTCAAATACCTGG
chr11	13488322	13488676	13531746	13532100	+	52	354	7	L1PA2	"COLO2T,COLO2N"	33	354	"L1PA2,MSTA"				c11p13488499FS	GTTGAGTGTTTTTATCATGAAAGG	c11p13488499ES	TCATTCTCAGTAAACTATCGCAAG
chr11	13805241	13805749	13848665	13849173	-	3766	508	26	L1HS	"COLO2T,COLO2N"	1058	529	"(TTTA)n,L1HS,MLT1F1,AT_rich"				c11p13805495FS	AGGGAAGTATGCTTGAAGACTAAG	c11p13805495ES	CTAACGCTAGATGACACGTTAGTG
chr11	13840443	13840721	13883867	13884145	+	14	278	2	L1PA3	"COLO2T,COLO2N"	39	278	MER102c				c11p13840582FS	CAACATAGTGAGACCTCGTCTTC	c11p13840582ES	TTTGAGAAGTGTCTGTTCATATCC
chr11	14606039	14606168	14649463	14649592	-	19	129	3	L1PA2	"COLO2T,COLO2N"	20	225	MER1B		PSMA1		c11p14606103FS	TGTTATAACGGAAAGCACATAGAG	c11p14606103ES	TCCTCAGTAAACTATCGCAAGAAC
chr11	14645551	14646282	14688975	14689706	+	54	731	5	L1PA3	"COLO2T,COLO2N"	27	730	"L2a,(TAA)n,L1PA3,L1PA4,LTR82A"		PDE3B		c11p14645916FS	GTTACAAAAAGATGTGTCATGCTC	c11p14645916ES	TAAATGACGAGTTAATGAGTGCAG
chr11	14700023	14700455	14743447	14743879	+	9390	432	8	L1PA2	"COLO2T,COLO2N"	579	200	"L1PA2,L1PA4"		PDE3B		c11p14700239FS	TTTGGAAAAAGTTTCTCTCTTGAC	c11p14700239ES	TCATTCTCAGTAAACTATCGCAAG
chr11	14734679	14734985	14778103	14778409	-	18	306	2	L1PA2	"COLO2T,COLO2N"	10	65	"LTR33,L1PA2"		PDE3B		c11p14734832FS	CAGCAAGAATAATACACTCCAATG	c11p14734832ES	TGGAAATCATCATTCTCAGTAAAC
chr11	14943006	14943436	14986430	14986860	+	255	430	12	L1PA3	"COLO2T,COLO2N"	651	539	"L2a,L1PA3"				c11p14943221FS	ATTTCTCAGATGTCACCTATCCTG	c11p14943221ES	ATGATGAGTTCATGTCCTTTGTAG
chr11	15336819	15336981	15380243	15380405	+	6092	162	21	noL1	"COLO2T,COLO2N"	5246	165	L1MA8	"LINE:Ewing,Iskow"			c11p15336900FS	AAGAAAAGCCACCAAATACTAATC	c11p15336900ES	GATGGGGATGTAAATTAGTACAGC
chr11	15951954	15952562	15995378	15995986	-	1266346	608	89	L1HS	"COLO2T,COLO2N"	896889	797	"T-rich,L1HS"		SOX6		c11p15952258FS	AACTTGTTAGGAATAATCCCTGTG	c11p15952258ES	TGGGAGATATACCTAATGCTAGATG
chr11	16543777	16543881	16587201	16587305	+	35	104	12	L1HS	"COLO2T,COLO2N"	36	103	"L1HS,(A)n"	Alu:Hormozdiari	DKFZp434N1217		c11p16543829FS	GCTTTTGCTTATGTGGTCTATTTC	c11p16543829ES	TTATGTTTAAGTACCCCCAAAAAG
chr11	17006255	17006594	17049679	17050018	-	215	339	6	L1PA2	"COLO2T,COLO2N"	122	166	"AluJr,AluSx"				c11p17006424FS	AAACACATAAAGTGAAGTAAGGGC	c11p17006424ES	ACACCGCATATTCTCACTCATAG
chr11	17089962	17090472	17133386	17133896	+	60	510	6	noL1	"COLO2T,COLO2N"	121	495	"AluSx1,AluSq2,L1M5"		PIK3C2A		c11p17090217FS	ATTTTTACACAGGGTCTTGTTCTG	c11p17090217ES	CACCTGAAGTTAGGAGTTCGAG
chr11	18787454	18787835	18830878	18831259	-	42	381	9	L1PA3	"COLO2T,COLO2N"	38	376	"FLAM_C,HERV16-int,(TTCC)n,L1PA3,(TTA)n"				c11p18787644FS	GTACTGTGTTGAAAAGAAGTGGTG	c11p18787644ES	TCATTCTCAGTAAACTATCGCAAG
chr11	19063450	19063647	19106874	19107071	-	65	197	2	L1PA17	"COLO2T,COLO2N"	41	68	AluY				c11p19063548FS	CAGGATGACTCTGTAACACTTCAG	c11p19063548ES	ACCTATAAATCTGACAAGCAGACC
chr11	19608944	19609085	19652368	19652509	-	21	141	4	L1PA3	"COLO2T,COLO2N"	23	333	"AluJb,A-rich"	LINE:Ewing	NAV2		c11p19609014FS	TAAAGGAGTTGAACAAAGACAGTG	c11p19609014ES	AATGCTAGATGACAAGTTAGTGGG
chr11	21431843	21432059	21475267	21475483	-	1417	216	12	L1PA2	"COLO2T,COLO2N"	2670	332	"L1PA2,L1ME1"		"NELL1,IDH3GL"		c11p21431951FS	TAATACCCATTCCTATTCCTTGTC	c11p21431951ES	TCATTCTCAGTAAACTATCGCAAG
chr11	21647388	21648147	21690812	21691571	-	42	759	3	noL1	"COLO2T,COLO2N"	95	758	L1PA3				c11p21647767FS	TAGGTATATCTCCCAATGCTATCC	c11p21647767ES	AAGAAACTACCATCAGAGTGAACAG
chr11	21858299	21858601	21901723	21902025	+	387	302	10	L1PA4	"COLO2T,COLO2N"	262	301	"L1MA3,L1PA4"				c11p21858450FS	TATAGTTTGTTTGATGAGGTCCTG	c11p21858450ES	CAAACTATCACAAGGACAAACAAC
chr11	23153923	23154330	23197347	23197754	-	33	407	5	L1PA3	"COLO2T,COLO2N"	128	197	"L2a,L1PA3"				c11p23154126FS	CTAAAGTAGGTGAGAGAGTCAGCC	c11p23154126ES	TCATTCTCAGTAAACTATCGCAAG
chr11	23276198	23276329	23319622	23319753	-	41	131	7	L1PA2	"COLO2T,COLO2N"	110	129	"L1PA2,AluYk12"				c11p23276263FS	TGAATAAATTTTGTGTTGCCTAAG	c11p23276263ES	CAAATGTCCAACAATGATAGACTG
chr11	23601215	23601451	23644639	23644875	+	55	236	5	noL1	"COLO2T,COLO2N"	128	239	L1MA7				c11p23601333FS	AAATCAATCATAAGCCAAAAGAAC	c11p23601333ES	TAGGCATTAATTTATTAGGATGGC
chr11	24312065	24312470	24355489	24355894	+	34001	405	47	L1HS	"COLO2T,COLO2N"	50245	519	"L1HS,L1MDa"	LINE:dbRIP			c11p24312267FS	AGTCCTACTGAGTAACTGTTTCCG	c11p24312267ES	GATGAGTTCATATCCTTTGTAGGG
chr11	24315417	24315779	24358841	24359203	-	20	362	2	noL1	"COLO2T,COLO2N"	7	871	(T)n				c11p24315598FS	CGACTAAGTATGTGCTTCATCAAC	c11p24315598ES	TGTTTTTATGACGTATGAGTGACC
chr11	24365516	24365616	24408940	24409040	-	15	100	4	L1PA2	"COLO2T,COLO2N"	10	146	"T-rich,L1PA2"				c11p24365566FS	TATACATGAAGACCGAAACATTTG	c11p24365566ES	TACCCAAAGGACTATAAATCATGC
chr11	25025444	25025584	25068868	25069008	-	186	140	11	noL1	"COLO2T,COLO2N"	73	114	(T)n		"LUZP2,DKFZp451K1618"		c11p25025514FS	GTGGATATTAACAAAGACTGGGAG	c11p25025514ES	CTTAAACAAAAATACCCAAAGCAG
chr11	26097733	26098089	26141157	26141513	+	677	356	10	L1PA3	"COLO2T,COLO2N"	1206	244	"L1PA3,MIR"				c11p26097911FS	TTGGCAAAATCCTAATTCTTACTC	c11p26097911ES	TCATTCTCAGTAAACTATCGCAAG
chr11	26273453	26273675	26316877	26317099	+	6305	222	3	noL1	COLO2T	0	0	AluY				c11p26273564FS	ACAGAAACATCTAGAGAGAGGTGG	c11p26273564ES	GGTAATTTGTTGTTGTTGTTGTTG
chr11	26375090	26375222	26418514	26418646	+	3375	132	4	L1PA7	"COLO2T,COLO2N"	19	466		"LINE:dbRIP,Ewing"	ANO3		c11p26375156FS	GAGAACTTCATTCCCATTTTTATG	c11p26375156ES	AAACTAACACAGGAACAGAAAACC
chr11	26949200	26949471	26992624	26992895	+	61	271	2	L1PA2	"COLO2T,COLO2N"	22	271	"L1PA2,L1PA5"				c11p26949335FS	TTGTAGTGTAGATGGAAAATCCAG	c11p26949335ES	TCATTCTCAGTAAACTATCGCAAG
chr11	27245712	27246075	27289136	27289499	-	40	363	3	L1PA7	"COLO2T,COLO2N"	37	363	"L1MB8,AluSg7,L1PA7"				c11p27245893FS	ATGGTAGGAGATAACCTACTGGTG	c11p27245893ES	TATGCAGCCATAATAAAAGATGAG
chr11	28024808	28025217	28068232	28068641	+	555	409	3	L1PA3	"COLO2T,COLO2N"	399	406	"L1PA3,AluSq,A-rich"		KIF18A		c11p28025012FS	TTATTTGGATTTGACTTGTCATTG	c11p28025012ES	TGGAAATCATCATTCTCAGTAAAC
chr11	29120828	29121242	29164252	29164666	-	103	414	10	L1HS	"COLO2T,COLO2N"	319	413	"L1HS,Tigger2,MIRb"				c11p29121035FS	CTTTTCCTATAAGAGCACTGATCC	c11p29121035ES	GAACTAGTTTACAGTCCCACCAAC
chr11	29883257	29883388	29926681	29926812	+	46	131	2	L1PA4	"COLO2T,COLO2N"	49	131	Tigger2				c11p29883322FS	CTCCTTAATGATTTTCTTAATGGC	c11p29883322ES	AAATGACAAGTTAATGGGTGTAGC
chr11	29886332	29887053	29929756	29930477	+	11	721	2	noL1	"COLO2T,COLO2N"	6	65	L1PA10				c11p29886692FS	TTTGAGGAGTGGTTTTTAGTTCTC	c11p29886692ES	CTCTCTAACTCATTCTATGAGGGC
chr11	30029259	30029372	30072683	30072796	-	100	113	7	L1PA3	"COLO2T,COLO2N"	118	114	"L1PA3,(T)n"				c11p30029315FS	TTTCCTGTTTTTCCAATTTCTTAG	c11p30029315ES	CAAATGTCCAACAATGATAGACTG
chr11	30162719	30162868	30206143	30206292	+	164	149	2	L1PA4	"COLO2T,COLO2N"	239	225	"L1MC,L1PA4"				c11p30162793FS	GGGTGAATAGGAGTTTACAGTAGG	c11p30162793ES	ACCATCATTCTCAGCAAACTATTG
chr11	30943531	30943693	30986955	30987117	-	105	162	7	L1HS	"COLO2T,COLO2N"	82	170	"L1M4,FordPrefect"		"DCDC5,KIAA1493"		c11p30943612FS	GAGTGCAAAGGATAAAGCAAAC	c11p30943612ES	TCATTCTCAGTAAACTATCGCAAG
chr11	31293331	31293852	31336755	31337276	-	241952	521	62	L1HS	"COLO2T,COLO2N"	337124	520	"L1HS,AluY"		"DCDC5,DCDC1"		c11p31293591FS	GAACAATTTTTCTCATTTCCTCTC	c11p31293591ES	CCATCATTCTCAGTAAACTATTGC
chr11	31715567	31715858	31758991	31759282	+	636	291	10	L1PA4	"COLO2T,COLO2N"	1027	294	"L1MB1,L1PA4"		ELP4		c11p31715712FS	TACCACATTTATCTGTTGATGGAC	c11p31715712ES	AACTATGAGAACACATGGACACAG
chr11	31768041	31768240	31811465	31811664	+	15	199	7	noL1	"COLO2T,COLO2N"	117	199	"(A)n,(T)n"		PAX6	PAX6.L	c11p31768140FS	ATTTGGTCACAAAAGTTGTGTATG	c11p31768140ES	AAAAGTTTGGATACCAAAATGAAG
chr11	32639640	32640041	32683064	32683465	-	31	401	3	L1PA5	"COLO2T,COLO2N"	8	66	L1PA5		CCDC73		c11p32639840FS	AGTTCTATGGTACATGTGGACAAC	c11p32639840ES	TAAAGCATGCTGCTATAAAGACAC
chr11	32712088	32712597	32755512	32756021	-	29	509	2	L1PA5	"COLO2T,COLO2N"	115	506	"SVA_D,L1PA5"		CCDC73		c11p32712342FS	GGACACATTTAAAGCAGTGTGTAG	c11p32712342ES	TGGCCTTATAAAATGAGTTAGGAG
chr11	33229782	33230365	33273206	33273789	+	146	583	3	noL1	"COLO2T,COLO2N"	3	572	"AluJb,MamRep137,A-rich"				c11p33230073FS	AATTTATGCGTTTTTAGGAGAGAC	c11p33230073ES	ATATAAAGAAGATGATCAGCCTGG
chr11	33418228	33418945	33461652	33462369	-	16	717	2	L1PA4	"COLO2T,COLO2N"	34	85	"L1MEe,AluYa5"				c11p33418586FS	GTCTTCATTTGGATTGGTTATTTC	c11p33418586ES	AAAGTATCTATCAGGACAAGGGTG
chr11	35557506	35557783	35600930	35601207	+	304	277	14	L1PA3	"COLO2T,COLO2N"	334	259	"L1PA3,L2c"				c11p35557644FS	ATAGCACTAGTTTCCTTTTGTTGG	c11p35557644ES	ATGATGAGTTCATGTCCTTTGTAG
chr11	35675185	35675639	35718609	35719063	-	77	454	5	L1PA4	"COLO2T,COLO2N"	21	91	"MER57-int,L1PA4"		TRIM44		c11p35675412FS	AAAATCTTGTTCAAGAGAGAAAGC	c11p35675412ES	CATTCTCAACAAACTATCACAAGG
chr11	35732487	35732675	35775911	35776099	-	13	188	4	L1PA4	"COLO2T,COLO2N"	11	539	"L2c,L1PA4"		TRIM44		c11p35732581FS	TTACATGTGAGTATTAGTGTGGGC	c11p35732581ES	AGCACTATTCACAATAGCAAAGAC
chr11	36529336	36529787	36572760	36573211	-	4119892	451	106	L1HS	"COLO2T,COLO2N"	3317616	464	"L1HS,MLT1B"		RAG1		c11p36529561FS	ATCAAATTGTAGTCAGAATGTTGC	c11p36529561ES	TCATTCTCAGTAAACTATCGCAAG
chr11	37405398	37406078	37448822	37449502	+	99	680	13	L1PA4	"COLO2T,COLO2N"	109	696	"L1MA2,L1PA4"	LINE:dbRIP			c11p37405738FS	TGGAGATATACCTAATGTTTAATGACC	c11p37405738ES	AGATAGGGATGGTTATCGTACAAG
chr11	39462577	39462729	39506001	39506153	-	26	152	5	L1PA3	"COLO2T,COLO2N"	10	155	"L1PA3,MER67C"				c11p39462653FS	TCCCTAAACAGTTTGTTCCTACTC	c11p39462653ES	CAAATGTCCAACAATGATAGACTG
chr11	39499530	39499908	39542954	39543332	+	10	378	2	noL1	"COLO2T,COLO2N"	3	65	L1PA7				c11p39499719FS	ACATAGGTATACATGTCATGGTGG	c11p39499719ES	GGCTAATATCCAGAATCTACAAGG
chr11	40238464	40238762	40281888	40282186	+	21	298	5	L1PA3	"COLO2T,COLO2N"	4	67	L1PA3		LRRC4C		c11p40238613FS	CCAGAAGTTCAAAGTTACAGTGAG	c11p40238613ES	AACTAGAAATACCATTTGACCCAG
chr11	40409180	40409285	40452604	40452709	+	15	105	5	L1PA2	"COLO2T,COLO2N"	18	68	"L1PA2,AT_rich"		LRRC4C		c11p40409232FS	AGAGATGAAGATTAACAGAGGTGG	c11p40409232ES	ACTGACAACCTTGCCTTCTATTAC
chr11	40708520	40708765	40751944	40752189	+	515	245	8	L1PA2	"COLO2T,COLO2N"	141	350	MIR3		LRRC4C		c11p40708642FS	GAACTCATTCACTATCACAAGTGG	c11p40708642ES	AATGCTAGATGACAAGTTAGTGGG
chr11	40894502	40894899	40937926	40938323	+	17	397	2	L1PA4	"COLO2T,COLO2N"	2	65	L1PA4		LRRC4C		c11p40894700FS	TCTTAACTGCATTTTGTCTATTGC	c11p40894700ES	AACCATTGTGGAAGTCAGTGTAG
chr11	42194935	42195316	42238359	42238740	+	11	381	4	L1PA2	"COLO2T,COLO2N"	506	187	L1PA2				c11p42195125FS	TGCATATCACTTCTTCTTTTTCTG	c11p42195125ES	TCATTCTCAGTAAACTATCGCAAG
chr11	42875124	42875442	42918548	42918866	-	158	318	5	L1PA2	"COLO2T,COLO2N"	387	312	"L1PA2,L1PA4"				c11p42875283FS	CAGCATGATTTATAATCCTTTGG	c11p42875283ES	TCATTCTCAGTAAACTATCGCAAG
chr11	43630950	43631471	43674374	43674895	-	232	521	7	L1PA4	"COLO2T,COLO2N"	86	1065	"L1ME1,MER21A"				c11p43631210FS	AGAACATGTATGCTGGTTTAAAGG	c11p43631210ES	AATGCTAAATGACAAGTTAATGGG
chr11	43753597	43753743	43797021	43797167	-	13	146	2	L1PA3	COLO2T	0	0	L1PA3		HSD17B12		c11p43753670FS	AGAAATCCTCATATTTTGACCTTG	c11p43753670ES	TGGAAATCATCATTCTCAGTAAAC
chr11	48501863	48502126	48545287	48545550	-	12	263	3	L1PA4	COLO2T	0	0	L1PA4				c11p48501994FS	TTATTAGGATTTGCTCTGTGTTTG	c11p48501994ES	TGATGAGTTCATGTCTTTTGTAGG
chr11	48712409	48712952	48755833	48756376	+	86705	543	45	noL1	"COLO2T,COLO2N"	84115	543	L1PA4	"LINE:dbRIP,Ewing,Iskow"			c11p48712680FS	CTTTGTGGTTTTATCTACCTTTGG	c11p48712680ES	CTAGTCAAAGAAAGGGGTGACAG
chr11	48825116	48825870	48868540	48869294	-	363509	754	34	L1HS	"COLO2T,COLO2N"	298289	580	"L1PA2,ALR/Alpha,L1HS,AT_rich"				c11p48825493FS	AGTTGAACCTTCCTTTTGATAGTG	c11p48825493ES	TAATCCTAGATGACACGTTAGTGG
chr11	49081974	49082269	49125398	49125693	-	3925	295	20	L1HS	"COLO2T,COLO2N"	6163	281	L1HS				c11p49082121FS	GAAAACCCTGGAGATTATAAGAAAG	c11p49082121ES	TCATTCTCAGTAAACTATCGCAAG
chr11	49600888	49601231	49644312	49644655	-	67	343	5	L1PA2	"COLO2T,COLO2N"	59	259	L1PA2		BC142657		c11p49601059FS	GTTCTTGAATAACAAGATCAGTGC	c11p49601059ES	AACCTCGCTTATTAAAAACTATCG
chr11	49682728	49682921	49726152	49726345	+	27	193	10	L1HS	"COLO2T,COLO2N"	28	105	"L1HS,(A)n"		BC142657		c11p49682824FS	GGTAAGGTTATTCTGTGACTCAGC	c11p49682824ES	CTCTATAGGGCAGCTTTATTTCTG
chr11	49771212	49771335	49814636	49814759	-	549352	123	45	L1HS	"COLO2T,COLO2N"	483577	123	"L1HS,L2"		BC142657		c11p49771273FS	AGACATTTCCTTTAGTCACCTCTG	c11p49771273ES	CGTATGTTTATTGTGGCATTATTC
chr11	50374666	50375413	50418090	50418837	-	16	747	3	L1PA4	"COLO2T,COLO2N"	6	391	L1PA4				c11p50375039FS	CACATTTTCTTAATCCAGCCTATC	c11p50375039ES	GTGGCACTATTCACAATAACAGAG
chr11	50414527	50414876	50457951	50458300	+	12	349	2	L1PA5	"COLO2T,COLO2N"	5	236	L1PA5				c11p50414701FS	GAACTAGTTTACAGTCCCACCAAC	c11p50414701ES	TTCAAGATGGATTAAAAACCAAAC
chr11	50629594	50629961	50673018	50673385	+	1401	367	33	L1HS	"COLO2T,COLO2N"	1749	341	"L1HS,ALR/Alpha"				c11p50629777FS	ATTGTGAGAAACTTCTTTGTGATG	c11p50629777ES	TCATTCTCAGTAAACTATCGCAAG
chr11	51403792	51404063	51547216	51547487	-	134	271	8	L1PA3	"COLO2T,COLO2N"	193	270	"L1PA3,L1M4"				c11p51403927FS	ATCCCTTAAATTTCATTTTGTCTG	c11p51403927ES	TGAGTTCATGTCCTTTGTAGAGAC
chr11	54722171	54722462	54965595	54965886	-	89	291	8	L1HS	"COLO2T,COLO2N"	47	288	"L1HS,ALR/Alpha"				c11p54722316FS	ATGTGAAGATATTTCCTTTTCCAC	c11p54722316ES	TCATTCTCAGTAAACTATCGCAAG
chr11	54920603	54920811	55164027	55164235	+	5295	208	12	noL1	"COLO2T,COLO2N"	3197	326	L1PA4				c11p54920707FS	ATATAGGCTCAAAATAAAGGGAGG	c11p54920707ES	CTTCTTTATTAGTCTTGCTAGCGG
chr11	56537938	56538073	56781362	56781497	-	22	135	4	noL1	"COLO2T,COLO2N"	12	65	L1MD2				c11p56538005FS	TATGGGATTCATAAAATAAGTTGG	c11p56538005ES	AATGCATTTATAAACAATCCTTGG
chr11	58344046	58344345	58587470	58587769	+	27	299	3	noL1	"COLO2T,COLO2N"	10	299	L1PA5				c11p58344195FS	GTTTTTCCATTTGTTTGTATCCTC	c11p58344195ES	GACAAATATCCTTGATGAACATTG
chr11	59572221	59572782	59815645	59816206	-	1640	561	18	L1HS	"COLO2T,COLO2N"	2950	414	"L1HS,MIR,(T)n"				c11p59572501FS	TTTCAATTAAATGCTGTCTGTAGC	c11p59572501ES	TGGGAGATATACCTAATGCTAGATG
chr11	59653834	59653936	59897258	59897360	+	13	102	6	L1PA5	"COLO2T,COLO2N"	7	92	"LTR9,L1PA5"				c11p59653885FS	AGACATAGATAAGCAAGCTGGAAG	c11p59653885ES	CAAATGTCCAACAATGATAGACTG
chr11	60062177	60062643	60305601	60306067	+	657	466	20	L1PA2	"COLO2T,COLO2N"	1375	462	"AT_rich,L1PA2,L1MA7"		MS4A13		c11p60062410FS	AGATAATTTCCTTTTTGCTGTGTC	c11p60062410ES	TCATTCTCAGTAAACTATCGCAAG
chr11	60124698	60125075	60368122	60368499	-	25	377	6	L1PA3	"COLO2T,COLO2N"	80	178	"L1PA13,L1PA3"				c11p60124886FS	TTTACAGATTATTTCATCACCCAG	c11p60124886ES	AACACCACATGTTCTCACTCATAG
chr11	60610365	60610723	60853789	60854147	+	35507	358	63	L1HS	"COLO2T,COLO2N"	17769	348	"L1ME3A,L1HS,AT_rich,AluSx"	LINE:dbRIP			c11p60610544FS	ACTTGGATAAGGTAAACGTGAATG	c11p60610544ES	GATGAGTTCATATCCTTTGTAGGG
chr11	60666978	60667141	60910402	60910565	+	32	163	7	L1PA2	"COLO2T,COLO2N"	19	96	"MIR,L1PA2,(A)n"		"DKFZp761I097,VPS37C"		c11p60667059FS	AGGTAGAGGTTACAGTGAGCTGAG	c11p60667059ES	CTGTACACTCATGCAAGAAAAGAG
chr11	62644230	62644656	62887654	62888080	+	246	426	10	L1PA2	"COLO2T,COLO2N"	123	202	"L1P1,L1PA2"		MGC34821		c11p62644443FS	GGGTAACAAAAATTACAGAACAGG	c11p62644443ES	ATGTCTTCTTTTGAGAAGTGTCTG
chr11	62965375	62965752	63208799	63209176	+	18	377	3	L1PA2	"COLO2T,COLO2N"	16	265	L1PA7				c11p62965563FS	GAACTAATTTACACTCCCACCAAC	c11p62965563ES	TCATTCTCAGTAAACTATCGCAAG
chr11	64226805	64227063	64470229	64470487	+	34	258	8	noL1	"COLO2T,COLO2N"	44	79	"SVA_D,AluJr4"		NRXN2		c11p64226934FS	TATAGAGAGATGAATGAGGCATTG	c11p64226934ES	TAGAAAGAGGTAGACATGGGAGAC
chr11	67355704	67356170	67599128	67599594	+	3786	466	18	noL1	"COLO2T,COLO2N"	1566	507	AluSz	"LINE:dbRIP,Ewing,Iskow"			c11p67355937FS	GTGACTAGGAATAGGAAGAAAACG	c11p67355937ES	AAGAACTGAGATAGAACTGGGTTG
chr11	72285407	72286036	72607759	72608388	+	213	629	4	noL1	"COLO2T,COLO2N"	292	626	"MER2,(A)n,AluY,MIRb"		FCHSD2		c11p72285721FS	CCCTAATACAATGTAAATGCTATGC	c11p72285721ES	ATGAGATCCTCTTTGTGGAATAAG
chr11	72317192	72317379	72639544	72639731	-	14	187	2	L1PA4	"COLO2T,COLO2N"	9	75	L2c		FCHSD2		c11p72317285FS	CAAAGTAGAAATTCTTTAGCAGGC	c11p72317285ES	ATACACCATGGAATACTATCCAGC
chr11	72438336	72438917	72760688	72761269	+	92097	581	51	L1HS	"COLO2T,COLO2N"	113555	500	"L1HS,L3,MER58A"		FCHSD2		c11p72438626FS	TTTTTAATATAGAGGCTGGCAAAC	c11p72438626ES	AATTTTTATGATTGGAAAGACTGG
chr11	73324156	73324348	73646508	73646700	-	17	192	9	noL1	"COLO2T,COLO2N"	30	192	"SVA_D,(T)n"				c11p73324252FS	GCTCTTTAATTGACTTTTCTGTCC	c11p73324252ES	TGTGTAGAAAGAAGTAGACATGGG
chr11	74265927	74266190	74588279	74588542	-	93	263	5	L1PA2	"COLO2T,COLO2N"	151	427	L1PA2		"DKFZp686K09128,FLJ00225,XRRA1"		c11p74266058FS	TGGAAATTATCTACTACACCACCC	c11p74266058ES	TGGCACATAAACACCATAGAATAC
chr11	76848799	76849085	77171151	77171437	-	10	286	5	noL1	"COLO2T,COLO2N"	23	70	"L2a,(T)n,A-rich"		PAK1		c11p76848942FS	TTTTGTGTTTTTAGTAGAGACGGG	c11p76848942ES	CATTTTAGAAATCTCGCTTTATGG
chr11	77187270	77187683	77509622	77510035	+	16	413	4	noL1	"COLO2T,COLO2N"	38	413	"L1M2,AluSx,L1PA7"		"XAP8alpha,RSF1"		c11p77187476FS	ATATTCCCAAAGTGCTTGGATTAC	c11p77187476ES	GAAACCCCGTCTCTACTAAAAATAC
chr11	78066074	78066500	78388426	78388852	-	1873	426	14	L1HS	"COLO2T,COLO2N"	1685	259	"L1HS,AT_rich,AluJr4,L1M5"	LINE:dbRIP	ODZ4		c11p78066287FS	AGATTTTCAAATCAAAATAGATTCC	c11p78066287ES	TCATTCTCAGTAAACTATCGCAAG
chr11	78794123	78794555	79116475	79116907	+	22	432	6	noL1	"COLO2T,COLO2N"	18	70	"L1ME4a,(A)n"		ODZ4		c11p78794339FS	CTTGTCTTTGGTCAAGATTGTATG	c11p78794339ES	ATTATGCAGGTACTATTTCTTCCG
chr11	78912786	78913481	79235138	79235833	-	13	695	5	noL1	"COLO2T,COLO2N"	9	67	"AluJb,AluY"				c11p78913133FS	AAGATCATTTCCATCTATCCAAAC	c11p78913133ES	TGGACTAAAACACAAGGATTTTTC
chr11	79595106	79595415	79917458	79917767	+	19	309	5	L1HS	"COLO2T,COLO2N"	16	357	L1HS				c11p79595260FS	AATCTTCACATTTATTTCTCCCAC	c11p79595260ES	TTGTATTAAATCCTCATTTTTGGG
chr11	80987806	80988143	81310158	81310495	-	68	337	6	L1PA3	"COLO2T,COLO2N"	56	380	"L1PA13,L1PA3"				c11p80987974FS	ACATCCATTTATTCTGGACCTTAG	c11p80987974ES	TCATTCTCAGTAAACTATCGCAAG
chr11	81550540	81550897	81872892	81873249	+	689	357	15	L1HS	"COLO2T,COLO2N"	778	315	"L1HS,AT_rich,L1ME3"		BC041900		c11p81550718FS	ACTTAATTCACATTTTCCTCAAGC	c11p81550718ES	GTTGAGTTCATATCCTTTGTAGGG
chr11	82783209	82783417	83105561	83105769	-	46	208	5	L1PA2	"COLO2T,COLO2N"	40	208	"L1PA2,MER58A"		BC070093		c11p82783313FS	AATCAAAGAAAAACACTCTGAAGG	c11p82783313ES	CAAATGTCCAACAATGATAGACTG
chr11	83329587	83330013	83651939	83652365	-	676	426	7	noL1	"COLO2T,COLO2N"	135	465	"MamRep605,MIR,MER53"	"LINE:Ewing,Iskow,Stewart"	DLG2		c11p83329800FS	GAATAGGACAGAGGAAACAAACTG	c11p83329800ES	CCTGTAATCTCAGCTTCTTGAGAG
chr11	84140866	84141307	84463218	84463659	-	10	441	6	L1PA2	"COLO2T,COLO2N"	5	442	"L2a,L1PA2,MIRb"		DLG2		c11p84141086FS	TTACAAGCATAGAGGATGCAGTAG	c11p84141086ES	TCATTCTCAGTAAACTATCGCAAG
chr11	84368227	84368577	84690579	84690929	+	15	350	2	noL1	"COLO2T,COLO2N"	10	350	L1PA5		DLG2		c11p84368402FS	TTGAAACCCTTGAAAACCTTATAG	c11p84368402ES	AACTAGTTCAACCATTGTGGTAGG
chr11	84719440	84719893	85041792	85042245	+	1526	453	14	L1HS	"COLO2T,COLO2N"	2074	453	L1HS		DLG2		c11p84719666FS	AATGATTTTATTACCGCTAGCATC	c11p84719666ES	TCATTCTCAGTAAACTATCGCAAG
chr11	84789591	84789694	85111943	85112046	+	17	103	2	L1PA3	"COLO2T,COLO2N"	8	107	"L1PA3,L1PA6"		DLG2		c11p84789642FS	TCTGCATCTATTGAGATAATCAGG	c11p84789642ES	CTGCTATAAAGACACATGCACAC
chr11	84874067	84874227	85196419	85196579	+	14	160	2	L1PA3	"COLO2T,COLO2N"	9	75	L1M2		DLG2		c11p84874147FS	TCTCTAGTCTGTTCCTCATGTCAG	c11p84874147ES	CCGACAATCATAGACTGGATTAAG
chr11	84888864	84889677	85211216	85212029	+	91006	813	42	L1HS	"COLO2T,COLO2N"	143218	830	"(TAAA)n,L1HS,L1PA7"		DLG2		c11p84889270FS	TAAAGGTTGAAGTCAGGTAGTGTG	c11p84889270ES	TTGTATATCTAGAAAACCCCATCG
chr11	85935285	85935979	86257637	86258331	+	1478	694	4	L1PA7	"COLO2T,COLO2N"	1608	68	"AluY,L1PA7"		ME3		c11p85935632FS	ATGAACTTAACCTTTTTATGGCTG	c11p85935632ES	GTGACAGATACGAACAGACACTTC
chr11	86144136	86144511	86466488	86466863	-	149	375	6	L1PA2	"COLO2T,COLO2N"	191	315	"L1PA2,MIR3"				c11p86144323FS	ACCAGTTGCTCACTAGATTCTCTC	c11p86144323ES	TGGAAATCATCATTCTCAGTAAAC
chr11	86726492	86726604	87048844	87048956	+	12	112	3	noL1	"COLO2T,COLO2N"	5	65	L1ME1				c11p86726548FS	CGTATTATTGAGTTTTGAGCACAC	c11p86726548ES	TAATTCAACCAGTCACTAGACCAG
chr11	86728264	86728779	87050616	87051131	-	52117	515	44	L1HS	"COLO2T,COLO2N"	74092	460	"L1ME3B,L1MEg,L1HS"				c11p86728521FS	TGTATCTGACTTCTTTCACTCAGC	c11p86728521ES	TCATTCTCAGTAAACTATCGCAAG
chr11	87086129	87086692	87408481	87409044	-	508285	563	86	L1PA2	"COLO2T,COLO2N"	525780	574	"L1PA2,AT_rich,L1P4,L1P4a"				c11p87086410FS	TATAGAACAGACATGCTTCAGTCC	c11p87086410ES	TAATGCTAGATGACACGTTAGTGG
chr11	87984711	87984813	88345063	88345165	-	49	102	5	L1PA2	"COLO2T,COLO2N"	54	103	"L1PA2,L1PA16"		GRM5		c11p87984762FS	GTTGTAATGTCCCTTTGTCATTTC	c11p87984762ES	CAAATGTCCAACAATGATAGACTG
chr11	89558671	89558897	89919023	89919249	-	11	226	5	L1PA2	"COLO2T,COLO2N"	47	229	"L1P1,L1PA2,AT_rich"		NAALAD2		c11p89558784FS	TTTAAAGTAGCTGGTGTAGTGGTG	c11p89558784ES	TGATGAGTTCATGTCTTTTGTAGG
chr11	89772610	89772930	90132962	90133282	-	2177	320	22	L1HS	"COLO2T,COLO2N"	1608	336	"L1MD2,L1HS,(T)n"				c11p89772770FS	ATCCATGGAGTTACCATGAATGAG	c11p89772770ES	TCATTCTCAGTAAACTATCGCAAG
chr11	90338824	90339060	90699176	90699412	-	75286	236	25	L1HS	"COLO2T,COLO2N"	39832	120	AT_rich				c11p90338942FS	AGAAAAAGTTGAAATCAGGAATTG	c11p90338942ES	GATGAGTTCATATCCTTTGTAGGG
chr11	90952791	90953026	91313143	91313378	+	3067	235	19	L1PA3	"COLO2T,COLO2N"	11401	243	"L1PA3,L1PA6"				c11p90952908FS	GATTCCCTCTTTTTCTATTGATTG	c11p90952908ES	TCATTCTCAGTAAACTATCGCAAG
chr11	91531686	91532275	91892038	91892627	+	44	589	11	noL1	"COLO2T,COLO2N"	145	591	"SVA_D,(A)n,L1MC4"				c11p91531980FS	ACCTCTTGAGTAGCTGGGATTAC	c11p91531980ES	ACCAGAGACCTTTGTTCACTTATC
chr11	92515442	92515708	92875794	92876060	+	232064	266	22	L1HS	"COLO2T,COLO2N"	194848	356	"L1PA10,L1HS,L1PA8A"				c11p92515575FS	TTAAATACCAATGCACAACATTTC	c11p92515575ES	GATGAGTTCATATCCTTTGTAGGG
chr11	92799767	92800539	93160119	93160891	+	305	772	23	L1HS	"COLO2T,COLO2N"	524	769	"L1HS,L1PA4"		CCDC67		c11p92800153FS	TAGATTCTGGATATTAGCCCTTTG	c11p92800153ES	TGGGAGATATACCTAATGCTAGATG
chr11	93415646	93415842	93775998	93776194	+	35	196	4	L1PA2	"COLO2T,COLO2N"	25	197	L1PA2		HEPHL1		c11p93415744FS	AGGATCTCTTTCTTGTGTACTTGG	c11p93415744ES	AATACTATGCAGCCATACAAAATG
chr11	93714244	93714685	94074596	94075037	+	27887	441	48	L1HS	"COLO2T,COLO2N"	17297	451	"L1HS,L1MEf"	LINE:dbRIP			c11p93714464FS	CATTCATTTGAATTGTTGTTTTTC	c11p93714464ES	TCATTCTCAGTAAACTATCGCAAG
chr11	93749351	93749672	94109703	94110024	+	21	321	5	L1PA4	"COLO2T,COLO2N"	23	157	MIRb				c11p93749511FS	TTCAAGCCCTGAGAAATTAAATAG	c11p93749511ES	TCATTCTCAGCAAACTATCACAAG
chr11	94324054	94324267	94684406	94684619	+	119	213	6	noL1	"COLO2T,COLO2N"	99	185		"LINE:Ewing,Iskow"			c11p94324160FS	ATGTCACAGCTGCACTAACTACTC	c11p94324160ES	AAAATACATTTGTAGATATGGGGC
chr11	94815010	94815639	95175362	95175991	+	723	629	27	L1HS	"COLO2T,COLO2N"	914	629	"L1HS,MER58C,MIRb"	LINE:dbRIP			c11p94815324FS	TTTGTATAGCCTTCTTTTCAGGAC	c11p94815324ES	TGGGAGATATACCTAATGCTAGATG
chr11	96313181	96313584	96807971	96808374	+	20650	403	37	L1PA2	"COLO2T,COLO2N"	15125	360	"L2a,L1PA2,A-rich"				c11p96313382FS	ATATGATTTGGGAGTAGAGCAGTC	c11p96313382ES	TCATTCTCAGTAAACTATCGCAAG
chr11	96482367	96482518	96977157	96977308	-	19	151	5	L1PA2	"COLO2T,COLO2N"	22	102	"T-rich,L1PA2"				c11p96482442FS	TGAGGAATTTTCACCTTCTTTAAC	c11p96482442ES	GTTAACATTGAGATGCATCAAGAC
chr11	97303654	97303812	97798444	97798602	+	49	158	7	L1PA4	"COLO2T,COLO2N"	50	163	"HAL1,A-rich"				c11p97303733FS	TTATTTATTGGGAAAAGGTATTGC	c11p97303733ES	ATGATGAGTTCATGTCCTTTGTAG
chr11	98984091	98984571	99478881	99479361	+	27635	480	15	L1HS	"COLO2T,COLO2N"	17435	469	MLT1B	LINE:dbRIP	CNTN5		c11p98984331FS	ATGTGAACTAGAAGAATGGAAAGC	c11p98984331ES	TGGGAGATATACCTAATGCTAGATG
chr11	99136948	99137212	99631738	99632002	-	349	264	4	L1PA3	"COLO2T,COLO2N"	565	308	L1PA3		CNTN5		c11p99137080FS	ATTACACACACACACAGAGGTTTG	c11p99137080ES	ATACACCATGGAATACTATGCAGC
chr11	99851564	99851719	100346354	100346509	-	12	155	2	L1PA2	COLO2T	0	0	L1PA2				c11p99851641FS	TACCTTCAATCCTTAACTACCCAG	c11p99851641ES	CAAATGTCCAACAATGATAGACTG
chr11	100935566	100935858	101430356	101430648	-	66	292	2	L1PA4	"COLO2T,COLO2N"	20	292	L1PA4		TRPC6		c11p100935712FS	TAAAAAGTTTGAGAAGCACTAGCC	c11p100935712ES	TGGTCCAAAAGAAGTATATAACGG
chr11	101176362	101176525	101671152	101671315	+	2365	163	9	L1PA3	"COLO2T,COLO2N"	196	163	"L1PA3,ERV3-16A3_I-int"				c11p101176443FS	ACAGCATTGAACGAGATTCTTATC	c11p101176443ES	CTGCTATAAAGACACATGCACAC
chr11	101463012	101463169	101957802	101957959	+	21	157	4	L1PA3	"COLO2T,COLO2N"	8	65	L1PA3				c11p101463090FS	CAGTTAATTCTGTGCTTTGACAAC	c11p101463090ES	TAGACTGGATTAAGAAAATGTGGC
chr11	102352291	102352727	102847081	102847517	+	1107	436	14	L1HS	"COLO2T,COLO2N"	435	436	"L1HS,LTR62"				c11p102352509FS	AAAGAGAGGACTCCTGTGAATATG	c11p102352509ES	TCACCTAATCAATAGAGACTGCAC
chr11	103626859	103627079	104121649	104121869	-	5836	220	23	L1PA3	"COLO2T,COLO2N"	9626	316	"L2a,L1PA3"				c11p103626969FS	TACATACTCCAAACACAAATGAGG	c11p103626969ES	TCATTTTCAGTAAACTATCGCAAG
chr11	104061102	104061358	104555892	104556148	-	223914	256	48	noL1	"COLO2T,COLO2N"	197426	271	MER34B	"LINE:Ewing,Iskow"			c11p104061230FS	CTACCTTCTAATGCTGAACTACCC	c11p104061230ES	ATTAAATTATCAAAAACCTTCCCC
chr11	104128832	104129034	104623622	104623824	+	1566	202	7	noL1	"COLO2T,COLO2N"	1651	87	L1M5	LINE:Ewing			c11p104128933FS	ATAAGAAGTGCTTTATGTGTTCCC	c11p104128933ES	AAAGTCATTTGGGATTACATTTTC
chr11	104839062	104839252	105333852	105334042	+	4504	190	21	L1PA3	"COLO2T,COLO2N"	9510	263	L1MA3				c11p104839157FS	TTGTTCTAAGTGTTTTTATGCCAG	c11p104839157ES	ATGATGAGTTCATGTCCTTTGTAG
chr11	106259718	106260417	106754508	106755207	+	35	699	3	noL1	"COLO2T,COLO2N"	30	703	"L2b,L1PA5"		GUCY1A2		c11p106260067FS	GTTTTCTTAGTTTACTTTGCAGGC	c11p106260067ES	TAAATTATGTCCTCTTGAGCAATG
chr11	106293831	106294020	106788621	106788810	+	19	189	3	L1PA4	"COLO2T,COLO2N"	5	66	L1PA4		GUCY1A2		c11p106293925FS	CAAACAAATTTGAGTTCTGTTGTC	c11p106293925ES	AGGATGAGTTCATGTCCTTTGTAG
chr11	106743709	106744011	107238499	107238801	+	45	302	6	L1PA2	"COLO2T,COLO2N"	8	302	"L1M2,L1PA2,L1PB4"		CWF19L2		c11p106743860FS	TTTATCCATTTCGTCTAGGTTTTC	c11p106743860ES	CAAATGTCCAACAATGATAGACTG
chr11	108059926	108060190	108554716	108554980	-	2164	264	23	L1HS	"COLO2T,COLO2N"	3819	294	"T-rich,L1HS"		DDX10		c11p108060058FS	TGATAGAAATTATTGCCTAGCTCC	c11p108060058ES	CTGATGAGTTCATGTCCTTTGTAG
chr11	108200976	108201204	108695766	108695994	+	21	228	3	noL1	"COLO2T,COLO2N"	15	208			DDX10		c11p108201090FS	TGAATGAGAATGGATGATTATGTC	c11p108201090ES	TTGTTAAACAGCAGGAAATAACTG
chr11	108553076	108553501	109047866	109048291	-	1822	425	27	L1HS	"COLO2T,COLO2N"	366	485	"L1HS,L2b,(T)n"				c11p108553288FS	ACCTCTGATTCTCTTCTGTGTACC	c11p108553288ES	TCATTCTCAGTAAACTATCGCAAG
chr11	108867627	108867800	109362417	109362590	-	50	173	3	L1PA2	"COLO2T,COLO2N"	22	160	"L1PA2,MSTA"				c11p108867713FS	TGTGCTGTGAATATAACATTTTCC	c11p108867713ES	CAAATGTCCAACAATGATAGACTG
chr11	109107843	109108171	109602633	109602961	+	134	328	10	L1PA4	"COLO2T,COLO2N"	139	431	"L1PA4,LOR1b"				c11p109108007FS	ATAACTATAAATGCCAACCAAAGC	c11p109108007ES	AAAGAAACAATATGGACAAAAACC
chr11	109251006	109251252	109745796	109746042	+	44	246	3	noL1	"COLO2T,COLO2N"	101	69	"L1MEd,AluY,L1ME2"				c11p109251129FS	TTAGTTTTATAAGAAAGGATCGGC	c11p109251129ES	TCTAATCTGGCATAGTATCCACTG
chr11	109882848	109883098	110377638	110377888	-	75524	250	16	noL1	"COLO2T,COLO2N"	14976	292	MIRb	"LINE:Beck,Ewing,Iskow,Stewart"			c11p109882973FS	GAAGTCTTTGCTAGGAACTTATGG	c11p109882973ES	GAAGGATGTTTATAAGGTGAGTGC
chr11	110014880	110015272	110509670	110510062	+	301	392	6	L1PA4	"COLO2T,COLO2N"	13	130	"L2b,L1PA4"		ARHGAP20		c11p110015076FS	ACCTATATGGTTTTTCTTTAGGGG	c11p110015076ES	ATGATGAGTTCATGTCCTTTGTAG
chr11	110076417	110076550	110571207	110571340	-	1011	133	3	L1PA3	"COLO2T,COLO2N"	872	349	L1PA3		ARHGAP20		c11p110076483FS	AAGATTAAAGTTGGAGGTGAACTG	c11p110076483ES	CAAATGTCCAACAATGATAGACTG
chr11	111700012	111700258	112194802	112195048	-	114	246	6	L1PA2	"COLO2T,COLO2N"	157	245	"L1PA2,L1PA6"				c11p111700135FS	GAACTAATTTACACTCCCACCAAC	c11p111700135ES	CAAATGTCCAACAATGATAGACTG
chr11	112535528	112535695	113030318	113030485	-	13	167	2	L1PA4	"COLO2T,COLO2N"	1	65	L1PA4		NCAM1		c11p112535611FS	AAAAACTTACATTCATCTGTTTTCTC	c11p112535611ES	TGGTTCTGTCTACATGGTATTAGC
chr11	113045369	113045525	113540159	113540315	+	1662	156	8	noL1	"COLO2T,COLO2N"	1836	448	AluSz				c11p113045447FS	GAGTGAGGCTTTTTCACTACTAGC	c11p113045447ES	TTCAATCCAGAATAGAAGAAAAGG
chr11	114400727	114400994	114895517	114895784	+	4570	267	21	noL1	"COLO2T,COLO2N"	5738	300	"THE1B,L1MB3"	"LINE:Ewing,Iskow"			c11p114400860FS	GAAAAATTGTCACTTTCTTTCCTG	c11p114400860ES	AGCTGGAGGTCATTATTCTAAGTG
chr11	114714520	114714870	115209310	115209660	-	30575	350	47	L1HS	"COLO2T,COLO2N"	36801	427	"L1HS,(T)n"		CADM1		c11p114714695FS	TAATAGAGCCAGGATGCAATAAAC	c11p114714695ES	TCATTCTCAGTAAACTATCGCAAG
chr11	114726428	114726877	115221218	115221667	-	11	449	7	noL1	"COLO2T,COLO2N"	16	449	"AT_rich,(T)n"		CADM1		c11p114726652FS	TGATTCAGGAAGTATGTGAAAATG	c11p114726652ES	TCACAGATAATTTAAAAACTACTCGC
chr11	115252303	115252526	115747093	115747316	-	48	223	5	L1PA4	"COLO2T,COLO2N"	42	227	"L1ME3A,L1PA4"				c11p115252414FS	ATATTGACCTTGTTTTCAACAACC	c11p115252414ES	GATAGCCTGGATTAAGAAAATGTG
chr11	115349123	115349306	115843913	115844096	+	39	183	3	L1PA4	"COLO2T,COLO2N"	6	177	"MER30,AT_rich"				c11p115349214FS	TCATTACATCTGTATGATCAAGGG	c11p115349214ES	AAACTAGAAACCATCATTCTCAGC
chr11	117223194	117223320	117717984	117718110	-	19	126	3	L1PA4	"COLO2T,COLO2N"	19	126	"L1PA4,L1ME3F"		"FXYD6,DKFZp564I1782"		c11p117223257FS	GACATATTTCTGATCTTGAGTCCC	c11p117223257ES	AACCCAAATATCCAACAATGATAG
chr11	119853289	119853828	120348079	120348618	+	383	539	3	noL1	"COLO2T,COLO2N"	470	539	AluSq2		ARHGEF12	ARHGEF12.35	c11p119853558FS	GTGTTATACTGACACACAGAAGGC	c11p119853558ES	TTTTTGTATTTTGGATTTCTTTCC
chr11	121196952	121197271	121691742	121692061	-	1352	319	19	L1HS	"COLO2T,COLO2N"	1410	310	"T-rich,L1HS"				c11p121197111FS	ATTTATTGGACGGTAATTTAGCAG	c11p121197111ES	TCATTCTCAGTAAACTATCGCAAG
chr11	121237284	121237617	121732074	121732407	+	110	333	10	L1PA4	"COLO2T,COLO2N"	290	325	"L2a,L1M5"				c11p121237450FS	CAAAGTTGTCAAAACACCTACAAG	c11p121237450ES	AAACTAGAAACCATCATTCTCAGG
chr11	121813148	121813256	122307938	122308046	+	17	108	2	L1PA4	COLO2T	0	0	L1PA4				c11p121813202FS	TTCCTTAATTTCACATGAAAAGTG	c11p121813202ES	AAAAATCTTGCTGATCCTATTCAC
chr11	121854412	121854771	122349202	122349561	+	132616	359	72	L1HS	"COLO2T,COLO2N"	94738	696	"L1HS,A-rich"	LINE:dbRIP			c11p121854591FS	GAAAGAATTTTTCTCTCTCTGAGC	c11p121854591ES	GATGAGTTCATATCCTTTGTAGGG
chr11	122747033	122747193	123241823	123241983	+	11816	160	18	noL1	"COLO2T,COLO2N"	8303	594		"LINE:Ewing,Stewart"			c11p122747113FS	CCTCTGGAAGAGACAAATTTATTG	c11p122747113ES	CTTCTGAGAGTGAAATAGGGAGTG
chr11	124917684	124917982	125412474	125412772	+	275088	298	69	L1HS	"COLO2T,COLO2N"	296603	298	"L1HS,MER4B-int"				c11p124917833FS	AAGAGAAAGACCTGAATTTTTGAG	c11p124917833ES	GATGAGTTCATATCCTTTGTAGGG
chr11	125765722	125766425	126260512	126261215	-	39	703	6	noL1	"COLO2T,COLO2N"	56	70	"L1MB3,L1M5"		ST3GAL4		c11p125766073FS	CCTTTGTGTCAGTTTGTACTTCTG	c11p125766073ES	ATAATGCATGCAATCAACAAATAC
chr11	126744249	126744508	127239039	127239298	+	12	259	6	L1PA3	"COLO2T,COLO2N"	31	261	"L1PA3,(A)n"				c11p126744378FS	CTATCAGATTACAGAATTGGACCC	c11p126744378ES	TAGACTGGATTAAGAAAATCTGGC
chr11	127243536	127243761	127738326	127738551	-	178	225	5	L1PA3	"COLO2T,COLO2N"	913	283	AT_rich				c11p127243648FS	TTGCTTTCTGTGATCACTCTTATC	c11p127243648ES	TGGAAATCATCATTCTCAGTAAAC
chr11	127872570	127873055	128367360	128367845	-	8895	485	12	noL1	"COLO2T,COLO2N"	13592	154		"LINE:Ewing,Iskow,Stewart"	ETS1		c11p127872812FS	CTCAAGTTACAGTATCTCGGTTTG	c11p127872812ES	ACACATATTTAAAAGCCTTTCCAG
chr11	128560700	128560813	129055490	129055603	+	21	113	2	L1PA4	"COLO2T,COLO2N"	46	220	L1PA4		RICS		c11p128560756FS	TCAAGTGACTAGCTTAGCAAGATG	c11p128560756ES	CGTATGTTTATTGTGGCATTATTC
chr11	128977985	128978421	129472775	129473211	+	26	436	3	L1PA8	"COLO2T,COLO2N"	20	70	"L1PA8,L1ME3F"				c11p128978203FS	TGTGTTTCTTGTTCTATGAAATGC	c11p128978203ES	GGGAATGTAAATTAGTTCAACCAC
chr11	131404003	131404361	131898793	131899151	-	12	358	5	L1PA4	"COLO2T,COLO2N"	1	65	"(TTTTG)n,L1MCa,L1PA4"		NTM		c11p131404182FS	TCAGTATTTTACTAAGCCTGTGCC	c11p131404182ES	AACCATCATTCTCAGCAAACTATC
chr11	133113725	133114493	133608515	133609283	-	11	768	7	noL1	"COLO2T,COLO2N"	17	643	"(TG)n,HAL1-3A_ME,MLT1I-int"				c11p133114109FS	CCTATTTTGTTAGTTGGCTTTTTG	c11p133114109ES	TACATGATACCAATTTTTAGGTCG
chr11	133810289	133810876	134305079	134305666	-	62279	587	27	noL1	"COLO2T,COLO2N"	42828	507	MIRb	"LINE:dbRIP,Ewing,Iskow,Stewart"			c11p133810582FS	GCCTGTAATCCCAGCTACTTG	c11p133810582ES	CACACACCACTCTCATTAAATAGG
chr12	712292	712725	842031	842464	+	88	433	5	L1PA5	"COLO2T,COLO2N"	68	433	"L1MB8,L1PA5,L1MEa,AluJb,L1MEc"				c12p712508FS	TACTTATGCCTGTAATCTCAGCAC	c12p712508ES	ACTTTTAGAAATGAAAACTACGGG
chr12	1712837	1713000	1842576	1842739	-	65	163	3	L1PA4	"COLO2T,COLO2N"	23	116			ADIPOR2		c12p1712918FS	ACCTTGTTAGATTTACAGTGGAGG	c12p1712918ES	AACACCACATGTTCTCACTCATAG
chr12	2109618	2109781	2239357	2239520	-	11	163	8	L1PA2	"COLO2T,COLO2N"	12	159	"L1PA2,(T)n"		CACNA1C		c12p2109699FS	GAACCAGTTGATCAAGTCCATTAC	c12p2109699ES	CAAATGTCCAACAATGATAGACTG
chr12	2260281	2260404	2390020	2390143	-	41	123	3	L1PA4	"COLO2T,COLO2N"	124	163	"L1MEf,L1PA4"		CACNA1C		c12p2260342FS	TTAACCTCTTGATACTTTGCTGTG	c12p2260342ES	GAAAAGATCATTGACTGCCTAAAC
chr12	3478370	3478679	3608109	3608418	-	79886	309	76	L1HS	"COLO2T,COLO2N"	68832	383	"L1HS,AT_rich,MLT1C"	LINE:dbRIP	PRMT8		c12p3478524FS	ACTCTCATCCAGCTACTTTATTGG	c12p3478524ES	GATGAGTTCATATCCTTTGTAGGG
chr12	4905341	4905651	5035080	5035390	+	18	310	3	L1PA4	"COLO2T,COLO2N"	27	304	"L1PA4,LTR16A"				c12p4905496FS	ACTGTTCATCTTTTTCTTTCTTGG	c12p4905496ES	GTATTTCTTTGTGCATGAAAATTG
chr12	4983632	4983751	5113371	5113490	+	10	119	2	L1PA3	"COLO2T,COLO2N"	15	120	"L1MA9,L1PA3"				c12p4983691FS	CATGCTCAAATAAGACAAATGAAG	c12p4983691ES	CAAATGTCCAACAATGATAGACTG
chr12	7185920	7186642	7294653	7295375	-	10	722	4	noL1	"COLO2T,COLO2N"	3	66	"CT-rich,(T)n"		CLSTN3	"CLSTN3.9,CLSTN3.8"	c12p7186281FS	GAGCTGAGAGGTTGCAAGTTATAC	c12p7186281ES	GAAAGAGCAGAAGAGTTGAGAAAG
chr12	7380636	7380824	7489369	7489557	+	45	188	5	L1PA4	"COLO2T,COLO2N"	59	316	L1PA7				c12p7380730FS	AGGTTTCCTTCTAGGGTTTTTATG	c12p7380730ES	ACCACATGTTCTCACTCATAGTTG
chr12	7997010	7997125	8105743	8105858	+	24	115	7	noL1	"COLO2T,COLO2N"	30	113	AluSx	"LINE:Ewing,Iskow"			c12p7997067FS	CTAAAGTCTCAACCATTCCAGC	c12p7997067ES	TGAAACCCGTCTCTACTAAAAATAC
chr12	9720909	9721640	9829642	9830373	-	3027	731	5	noL1	"COLO2T,COLO2N"	2730	78	"L1MC1,AluSz"		"LLT1,CLEC2D"		c12p9721274FS	ATAGAACTGTCCATTTTAGCATCC	c12p9721274ES	TCTACAAAAAGACAAAAATGAGCC
chr12	11082455	11082666	11191188	11191399	-	52	211	5	noL1	"COLO2T,COLO2N"	225	86	L1ME3B		"PRB4,PRR4,PROL4,PRH1"		c12p11082560FS	ATCCCAATATATGTCTTCTTGCTG	c12p11082560ES	TATTTATATTTTCCCATGGACACC
chr12	11347872	11348134	11456605	11456867	+	30	262	3	L1PA2	"COLO2T,COLO2N"	108	66	"L1PA8,L1PA2"		PRB4		c12p11348003FS	GTACTAATTAACATTCCCACCAGG	c12p11348003ES	ATGATGAGTTCATGTCCTTTGTAG
chr12	11919201	11919438	12027934	12028171	+	14	237	3	L1PA4	"COLO2T,COLO2N"	15	237	L1PA4		ETV6		c12p11919319FS	AAACATGACTCACGGATGACTAC	c12p11919319ES	CCATCATACCATTAAGATACATGC
chr12	12824620	12824986	12933353	12933719	-	8733	366	34	noL1	"COLO2T,COLO2N"	2514	454	"AluJb,MamRep4096"	"LINE:dbRIP,Ewing,Iskow,Stewart"	"APOLD1,DDX47"		c12p12824803FS	TGTTCTAGAGCACTTACATTCTGG	c12p12824803ES	AAGTTATGTGATGATGACTTTTTCC
chr12	13442785	13443165	13551518	13551898	+	252	380	5	L1PA2	"COLO2T,COLO2N"	1025	385	"L1P1,L1PA2"				c12p13442975FS	ATCAAGCTACCAATGACTTTCTTC	c12p13442975ES	TCATTCTCAGTAAACTATCGCAAG
chr12	13756551	13756676	13865284	13865409	+	11	125	2	L1PA4	COLO2T	0	0	"AT_rich,L1PA4,L1ME2"		GRIN2B		c12p13756613FS	AAGAGAAGCTATCTCCAAGAACTG	c12p13756613ES	GATAGACTGGATTAAGAAAATGGG
chr12	14226579	14226977	14335312	14335710	+	1571	398	8	L1HS	"COLO2T,COLO2N"	261	311	"L1HS,AluY,L1MEc"				c12p14226778FS	CTGTGTACCTGTGCTACCACTTAC	c12p14226778ES	TCATTCTCAGTAAACTATCGCAAG
chr12	15521429	15521866	15630162	15630599	+	50	437	5	noL1	"COLO2T,COLO2N"	24	66	L1PA2		PTPRO		c12p15521647FS	TGTTGATGAGTGTATAGTGTGGTG	c12p15521647ES	AACTAGAAATACCATTTGACCCAG
chr12	16979824	16980208	17088557	17088941	-	126	384	4	noL1	"COLO2T,COLO2N"	111	67	"AluSc,L1PA15-16"				c12p16980016FS	TCTTTGTAGAAGTCTTTCACCTCC	c12p16980016ES	AAAAATAAAAACCAGACAGACACG
chr12	18643849	18643967	18752582	18752700	+	10	118	2	L1PA3	"COLO2T,COLO2N"	12	82	"L1PA3,L1M7,A-rich"		PIK3C2G		c12p18643908FS	CTTTCATAGGCATTTGAAGAGAAG	c12p18643908ES	AAAGACTGGATTAAGAAAATGTGG
chr12	18652945	18653095	18761678	18761828	+	210	150	3	L1PA4	"COLO2T,COLO2N"	234	234			PIK3C2G		c12p18653020FS	TTAAAAGTGTGGCCTTTAGAAATC	c12p18653020ES	GATGAGTTCATATCCTTTGTAGGG
chr12	18709326	18709463	18818059	18818196	+	18	137	2	L1PA3	"COLO2T,COLO2N"	8	83	"L1PA3,AT_rich,L1MB3"				c12p18709394FS	CAGTACAGACAGGGTTTCACTATG	c12p18709394ES	CAAATGTCCAACAATGATAGACTG
chr12	18980798	18981111	19089531	19089844	+	968	313	12	noL1	COLO2T	0	0	"L4,LTR79"				c12p18980954FS	CAGTGAGTGAGTTAATCAGACTGG	c12p18980954ES	ACATCAACTATGGAAATTCCTCTG
chr12	19262962	19263192	19371695	19371925	-	44	230	7	L1HS	"COLO2T,COLO2N"	7	87	"L1HS,(TTTTTA)n"		PLEKHA5		c12p19263077FS	GCAAGAATAGAGGATAAAGATTGG	c12p19263077ES	TTCACATATACAGTCATCCCTCAG
chr12	19810946	19811336	19919679	19920069	+	65	390	6	L1HS	"COLO2T,COLO2N"	173	360	"L1HS,L1PA15"	LINE:Iskow			c12p19811141FS	AGGGATAAATCCAACTTTATTGTG	c12p19811141ES	GAACTAGAAAAGCAAGAACAAACC
chr12	20200104	20200226	20308837	20308959	-	28	122	3	L1PA2	"COLO2T,COLO2N"	25	135	"L1PA2,L2"				c12p20200165FS	AAGTTTCACTTTGGTTTTTATTGC	c12p20200165ES	AGACAAGGGCATCATTTCTTATAG
chr12	20365738	20366287	20474471	20475020	-	192	549	3	noL1	"COLO2T,COLO2N"	314	73	"FRAM,AluY,FLAM_A"				c12p20366012FS	CCTAATATCTGGGACTAGAAATGC	c12p20366012ES	GAAACCCCGTCTCTACTAAAAATAC
chr12	21595133	21595263	21703866	21703996	-	28	130	3	L1PA2	"COLO2T,COLO2N"	21	65	"L1PA2,AluSx"		GYS2		c12p21595198FS	AATGGCTTTAGAACTGAATTGTTC	c12p21595198ES	CAGCCCTCTTTATGTCTTATCTTC
chr12	22186463	22186809	22295196	22295542	+	42	346	9	L1PA3	"COLO2T,COLO2N"	47	718	"L1PA3,L1PA5"				c12p22186636FS	TATCTTGTACTGCTATCACTCCCC	c12p22186636ES	AACTAGAAATACCATTTGAGCCAG
chr12	22778802	22779010	22887535	22887743	-	137	208	12	L1PA2	"COLO2T,COLO2N"	199	372	"L1PA2,AT_rich"				c12p22778906FS	TTTCTGGAGTTCTTTAGTACTGGG	c12p22778906ES	CAAATGTCCAACAATGATAGACTG
chr12	23461776	23461957	23570509	23570690	-	36	181	2	L1PA3	"COLO2T,COLO2N"	53	247	"L1PA3,AluYc"				c12p23461866FS	AAAAGACCTACACCTGTGTTTACC	c12p23461866ES	CTCTCTTCTGGCTTGTAGAGTTTC
chr12	23565619	23565925	23674352	23674658	-	130	306	6	L1PA3	"COLO2T,COLO2N"	160	408	"L1PA3,L1MEg"				c12p23565772FS	GAACCACTAGTCTCTTCAAAGCTC	c12p23565772ES	AACAAAACAAAATTCTTTTCAAGTG
chr12	23679870	23680125	23788603	23788858	+	13	255	2	L1PA5	"COLO2T,COLO2N"	7	65	"L2c,L1PA5"		SOX5		c12p23679997FS	TACAAATTAGCATGTGCCATAGAC	c12p23679997ES	GAAGCTAGAAACCATCATTCTGAG
chr12	23763958	23764071	23872691	23872804	+	19	113	2	noL1	COLO2T	0	0	AluJr		SOX5		c12p23764014FS	CCACATGTAGGGTATTTATTAGGC	c12p23764014ES	GATTCACAAGGTTTCTAAGCTCTC
chr12	23870222	23870911	23978955	23979644	-	91	689	10	L1PA4	"COLO2T,COLO2N"	31	77	L1PA4		"L-SOX5,SOX5"		c12p23870566FS	AATTGTAATCCGGTAAGTGAAAAG	c12p23870566ES	AGTGTGACATTAGTCATGTGGAAG
chr12	24759679	24759895	24868412	24868628	-	3107	216	8	noL1	"COLO2T,COLO2N"	481	84		"LINE:Ewing,Iskow,Stewart"			c12p24759787FS	GTAAAACATACCTGGAGAAACAGC	c12p24759787ES	GTGTTGGAATGATATGTTGAGTTG
chr12	25562030	25562133	25670763	25670866	+	326	103	6	L1PA3	"COLO2T,COLO2N"	420	104			IFLTD1		c12p25562081FS	GATTAACACACACTCTGTGAATGG	c12p25562081ES	TCATTCTCAGTAAACTATCGCAAG
chr12	25586893	25587125	25695626	25695858	+	142	232	7	L1PA3	"COLO2T,COLO2N"	35	231	"L1PA3,L1MEc"		IFLTD1		c12p25587009FS	ATAGAACTTATTGGTGAAGCCATC	c12p25587009ES	CAAATGTCCAACAATGATAGACTG
chr12	25666805	25667122	25775538	25775855	-	550	317	6	noL1	"COLO2T,COLO2N"	890	204	"L2a,Tigger15a,(CAAAA)n"	"LINE:Ewing,Iskow,Stewart"			c12p25666963FS	TGACTTAGCCAAGTGTAAAACAAC	c12p25666963ES	GTAAGCTTTACTAGATGACCAGCC
chr12	26269894	26270202	26378627	26378935	+	10	308	6	noL1	"COLO2T,COLO2N"	17	71	(A)n		SSPN		c12p26270048FS	GTAGTGTGAGAAGCATAAGGGAAG	c12p26270048ES	TTAAAAAGCTGGTTACACAAAATG
chr12	26812578	26812977	26921311	26921710	+	120	399	19	L1HS	"COLO2T,COLO2N"	141	399	"L1HS,(A)n,Charlie1b,L1PA7"		"ITPR2,TIPR"		c12p26812777FS	TGTTTTACTATGTGGCTGAGATTG	c12p26812777ES	CACATACCTATGTAACAAACCTGC
chr12	28117513	28117662	28226246	28226395	-	2638	149	7	noL1	COLO2T	0	0	L1MA8	LINE:Ewing			c12p28117587FS	ACCTTTTTGGAGAATGTAAATGAG	c12p28117587ES	AGAAAAGTCTGATCCATAGAATGC
chr12	32079087	32079843	32187820	32188576	-	15	756	2	noL1	"COLO2T,COLO2N"	28	756	"T-rich,AluSg7,AluJo,AluSx3"				c12p32079465FS	TTTCCTTTCTTTTTCTTTTCTTTTC	c12p32079465ES	GCTCTGTCACCCAGGCTAGAG
chr12	33216751	33217068	33325484	33325801	-	1297	317	6	noL1	"COLO2T,COLO2N"	87	129	"LTR67B,Kanga1"	"LINE:dbRIP,Ewing,Iskow,Stewart"			c12p33216909FS	GAGACTTTGAGCAAATGATGTATG	c12p33216909ES	ACTCTAAGACTCACTTGTTCAGCC
chr12	33220107	33220387	33328840	33329120	-	5006	280	16	L1PA4	"COLO2T,COLO2N"	13898	291	"L1MCa,AluSc"				c12p33220247FS	CGTGTCAGTACGTATGTCTTTCTC	c12p33220247ES	AAATCATCATTCTCAGCAAACTATC
chr12	33784776	33784974	33893509	33893707	+	53	198	2	L1PA2	"COLO2T,COLO2N"	30	198	"L1MA9,L1PA2,(CAAT)n"				c12p33784875FS	TTGTCTGTTTCTACCTTCAGTTTG	c12p33784875ES	TCATTCTCAGTAAACTATCGCAAG
chr12	33908481	33908602	34017214	34017335	-	363	121	10	noL1	"COLO2T,COLO2N"	260	198	L1MA9	LINE:Ewing			c12p33908541FS	GAACAATGTAGGCTTCTATTCCAC	c12p33908541ES	AGAGTCAAGGAAAATGAAGAGATG
chr12	34236761	34236898	34345494	34345631	-	249	137	5	L1PA2	"COLO2T,COLO2N"	330	162					c12p34236829FS	TTTTAAAAACTGTGTTTCCTACCC	c12p34236829ES	TACTCTGCATATAACACAGAAGCC
chr12	36282790	36282894	37996523	37996627	+	296	104	4	noL1	COLO2T	0	0	ALR/Alpha				c12p36282842FS	CTGAGAATGCTTCTGTCTAGGTTC	c12p36282842ES	GTTGAAGCTTTCTTTTGATAGAGC
chr12	36329876	36330200	38043609	38043933	-	184	324	8	L1PA3	"COLO2T,COLO2N"	142	228	"L1PA3,ALR/Alpha"				c12p36330038FS	GTTGAACCTATCTTTTGATTGAGC	c12p36330038ES	AGTCTCAAAGGCCTCTAAATATCC
chr12	36541609	36541903	38255342	38255636	-	86	294	7	L1PA2	"COLO2T,COLO2N"	20	118	"L1PB1,L1PA2"				c12p36541756FS	TTTCAAAAGTTATTGGGGTATAGG	c12p36541756ES	GATCCATTTGAGGTCTATTTTGAG
chr12	36866378	36866653	38580111	38580386	+	33	275	3	L1PA3	"COLO2T,COLO2N"	40	391	"L1PA3,L1M1"				c12p36866515FS	CTCTATGCATTCATCCATTATTTG	c12p36866515ES	TCATTAACACCAGACATGTCCTAC
chr12	37485671	37485956	39199404	39199689	+	466741	285	47	L1HS	"COLO2T,COLO2N"	873014	275	"L1HS,L1PA3"		CPNE8		c12p37485813FS	AGCCTGTTATTGGTCTATTCAGAG	c12p37485813ES	CAAATGTCCAACAATGATAGACTG
chr12	37643316	37643571	39357049	39357304	-	27	255	4	L1PA3	"COLO2T,COLO2N"	45	200	L1PA3				c12p37643443FS	GACACGCATACTTACACATACCTC	c12p37643443ES	TCATCATTCTCAGTAAACTATCGC
chr12	38481347	38481970	40195080	40195703	+	21628	623	55	L1HS	"COLO2T,COLO2N"	25484	468	"L2a,AT_rich,(A)n,MIR3"		"C12orf40,SLC2A13"		c12p38481658FS	ATCCCCTGGTACTAGATTCTAAGC	c12p38481658ES	TGGGAGATATACCTAATGCTAGATG
chr12	40524119	40524427	42237852	42238160	-	6634	308	29	L1HS	"COLO2T,COLO2N"	1810	309	"L1HS,L2b,Tigger4b,(T)n"	LINE:dbRIP			c12p40524273FS	AGAGACAGTGGAATAAGGTACAGG	c12p40524273ES	GATGAGTTCATATCCTTTGTAGGG
chr12	41542903	41543270	43256636	43257003	-	3799	367	14	noL1	"COLO2T,COLO2N"	753	443	AluJb	"LINE:dbRIP,Ewing"			c12p41543086FS	AAACAGTATTGCCTTCTTCTTTTG	c12p41543086ES	TCCAATAAGTGACATAATACAGGC
chr12	42157016	42157137	43870749	43870870	+	159	121	3	L1PA2	"COLO2T,COLO2N"	31	65	"L1PA2,AT_rich"		ADAMTS20		c12p42157076FS	CACACTTGTAGAAATAGGCACTTG	c12p42157076ES	GATGAGTTCATATCCTTTGTAGGG
chr12	42212123	42212673	43925856	43926406	-	2970	550	15	L1HS	"COLO2T,COLO2N"	5758	449	L1HS		ADAMTS20	ADAMTS20.36	c12p42212398FS	AGCAACATGTCATACATGCTAAAC	c12p42212398ES	TAATGCTAGATGACACGTTAGTGG
chr12	42265716	42266258	43979449	43979991	+	175	542	16	L1HS	"COLO2T,COLO2N"	533	544	"MLT1F2,L1HS,(A)n,LTR52"	LINE:dbRIP			c12p42265987FS	TTATTGTAACACAGTTTCTGTGGG	c12p42265987ES	TGGGAGATATACCTAATGCTAGATG
chr12	42302512	42302803	44016245	44016536	-	13	291	3	noL1	"COLO2T,COLO2N"	8	294	L1PA3				c12p42302657FS	TCTCATCACTTCTCTGCTGAATC	c12p42302657ES	TAGTTTAACCATTGTGGAAGTCAG
chr12	42787983	42788317	44501716	44502050	-	74652	334	46	L1HS	"COLO2T,COLO2N"	42996	442	L1HS		"DKFZp434K2435,TMEM117"		c12p42788150FS	ATCAGCCTCCAATTATGAATTTAC	c12p42788150ES	GATGAGTTCATATCCTTTGTAGGG
chr12	42831315	42831420	44545048	44545153	-	27	105	2	L1PA4	"COLO2T,COLO2N"	19	71			"DKFZp434K2435,TMEM117"		c12p42831367FS	GCCCATCAAAATATCAAATAATTC	c12p42831367ES	ACAAGAGGCACTAAATAAAAGGTG
chr12	43256192	43256653	44969925	44970386	-	1305	461	12	L1PA3	"COLO2T,COLO2N"	3828	426	"L1PA3,L2b,(CAT)n"		"NELL2,hucep-12"		c12p43256422FS	AATGTTAATGACCTACAAGCCATC	c12p43256422ES	TCATTCTCAGTAAACTATCGCAAG
chr12	43545821	43546004	45259554	45259737	+	33	183	4	L1HS	"COLO2T,COLO2N"	38	404	"L1HS,L1M1,MLT1A1"		"NELL2,hucep-12"		c12p43545912FS	AATTTTGTGGAATTCTCCTGTTAC	c12p43545912ES	CGTATGTTTATTGTGGCATTATTC
chr12	43591993	43592130	45305726	45305863	+	14	137	2	L1PA4	COLO2T	0	0	"(TAAA)n,L1PA4"				c12p43592061FS	TAGCTTTTTGAGATTTTCAGTGTG	c12p43592061ES	GTAAATGCCTGTTTAATCCTTGTC
chr12	45435776	45436679	47149509	47150412	+	33	903	4	L1PA3	"COLO2T,COLO2N"	18	1116	"L1PA3,MER63B,L2c"				c12p45436227FS	TTTGGTAGAGCCAGTAATTAGACC	c12p45436227ES	TGTCTACTATATTTTCCTTCCCCC
chr12	45621397	45621508	47335130	47335241	+	46	111	3	L1PA2	"COLO2T,COLO2N"	1	65	"L1PA2,AT_rich"				c12p45621452FS	AGATTTGTTTCATAAGCGTAAACC	c12p45621452ES	GCTGCTATAAAGACACATGCATAC
chr12	45655969	45656092	47369702	47369825	+	84	123	5	noL1	"COLO2T,COLO2N"	515	247	L1PA8				c12p45656030FS	ATTCATAGCCAAATTCTACCAGAG	c12p45656030ES	TTTGTAGTTCTCCTTGAAAAGGTC
chr12	47258595	47258897	48972328	48972630	+	14	302	4	L1PA3	COLO2T	0	0	"AluSx,L1M5"				c12p47258746FS	ACAGTGAGTGGGTAGATAGGAAAG	c12p47258746ES	ACTGCATATTCTCACTCATAGGC
chr12	48949928	48950319	50663661	50664052	+	245	391	4	noL1	"COLO2T,COLO2N"	396	391	AluSp		LIMA1		c12p48950123FS	ACTCCTGAACTCAAGCAATCTATC	c12p48950123ES	TTCTCTGCACCATAAAGTCTAAATC
chr12	49808481	49808785	51522214	51522518	+	83	304	7	L1PA4	"COLO2T,COLO2N"	65	303	"L1PA4,Plat_L3"		TFCP2		c12p49808633FS	AAAGCCTAGTTGTTTCTCACTGTC	c12p49808633ES	TATATTCCCCGTACCTTATACCAG
chr12	50242321	50242728	51956054	51956461	-	21311	407	25	L1HS	"COLO2T,COLO2N"	43594	407	"L1PA3,L1HS"				c12p50242524FS	TACCAATTCCTCCTTATACCTCTG	c12p50242524ES	ATGATGAGTTCATGTCCTTTGTAG
chr12	50398280	50398427	52112013	52112160	+	13	147	2	noL1	"COLO2T,COLO2N"	12	152	AluJo		SCN8A		c12p50398353FS	TCATTTCTGAAAATGTTCAATCAC	c12p50398353ES	GCATATGGCATGTATCTAACAATG
chr12	51466504	51466618	53180237	53180351	+	90	114	2	L1PA3	"COLO2T,COLO2N"	62	493	L1PA3				c12p51466561FS	CTTCTCAGTGCTCCTTCTTTTC	c12p51466561ES	GTAGAAGTTGGTTCCTCTATGTCC
chr12	53474594	53474968	55188327	55188701	+	40148	374	41	L1HS	"COLO2T,COLO2N"	37827	378	"L1HS,MLT1A"				c12p53474781FS	CAATTACATTTTAGTTTCAGCGTG	c12p53474781ES	TCATTCTCAGTAAACTATCGCAAG
chr12	53761066	53761285	55474799	55475018	-	56	219	4	L1PA3	"COLO2T,COLO2N"	82	396	(TG)n				c12p53761175FS	TAGACTGGATAAAGAAAATGTGGC	c12p53761175ES	GGGAGATATTCCTAATGCTAGATG
chr12	53776032	53776354	55489765	55490087	-	830	322	13	L1HS	"COLO2T,COLO2N"	1101	332	"L1HS,AT_rich"				c12p53776193FS	CCTTGTAATAAATTTGTCCAGGTC	c12p53776193ES	TCATTCTCAGTAAATTATCGCAAG
chr12	53904633	53905005	55618366	55618738	-	44	372	6	L1PA3	"COLO2T,COLO2N"	55	387	"L1PA3,(TTTA)n,MLT1C"				c12p53904819FS	AGCAGAGAGAGAGAGAGAGATTTG	c12p53904819ES	AACTAGAAATACCATTTGACCCAG
chr12	54371176	54371410	56084909	56085143	+	13	234	2	L1PA3	"COLO2T,COLO2N"	7	234	"L1MA8,L1PA3,(TAAAA)n"		"ITGA7 variant protein,ITGA7"		c12p54371293FS	TATTACATGGATAATCCTCCCTTC	c12p54371293ES	ATGATGAGTTCATGTCCTTTGTAG
chr12	55645066	55645166	57358799	57358899	+	55	100	9	L1HS	"COLO2T,COLO2N"	1151	106	"SVA_D,L1HS"				c12p55645116FS	CAGGAAGTTGCACAAAATGTATAG	c12p55645116ES	CAAATGTCCAACAATGATAGACTG
chr12	55657515	55657955	57371248	57371688	+	18	440	2	L1PA8	"COLO2T,COLO2N"	31	441	"L1PA8,AluY"				c12p55657735FS	CACCAAATGAACTAAATAAGGGAC	c12p55657735ES	GAAACCCCGTCTCTACTAAAAATAC
chr12	56402700	56403006	58116433	58116739	+	83	306	3	noL1	"COLO2T,COLO2N"	49	65	AluSz				c12p56402853FS	CAAGTAACCCAGTCTTTTCAGAAC	c12p56402853ES	ACAGGATAAGAAAAGGGATAGAGG
chr12	57672376	57672559	59386109	59386292	-	16	183	3	L1PA4	"COLO2T,COLO2N"	22	214	"L2c,L1M6,L1PA4"				c12p57672467FS	TTAAATAAATAGTGCACGTTCCTG	c12p57672467ES	AGGATGAGTTCATGTCCTTTGTAG
chr12	58688293	58688791	60402026	60402524	-	4397	498	18	L1HS	"COLO2T,COLO2N"	10202	243	"L1HS,AT_rich"				c12p58688542FS	GAAAACAAGTGACAAACATAGCAG	c12p58688542ES	AAAAACCAAACACCTCATATTCTC
chr12	59682129	59682666	61395862	61396399	-	2643	537	20	L1HS	"COLO2T,COLO2N"	5182	537	"L1HS,L1PA4"				c12p59682397FS	TTTGTAATTCTCCTTGAAGAGGTC	c12p59682397ES	TCATTCTCAGTAAACTATCGCAAG
chr12	60052910	60053282	61766643	61767015	-	6691	372	28	L1HS	"COLO2T,COLO2N"	9667	371	"L1HS,AluSx"	LINE:dbRIP			c12p60053096FS	AGAACAGAGACATCTCACAGACAC	c12p60053096ES	TTTTTCTGCATCTCACTCATAGG
chr12	60427877	60428184	62141610	62141917	+	185	307	5	L1PA3	"COLO2T,COLO2N"	169	291	"L1PA3,AT_rich,(GGGA)n,Charlie9"		"FAM19A2,DKFZp761E1217"		c12p60428030FS	AGCTCTTTCTTAACAGACACATCC	c12p60428030ES	TCATTCTCAGTAAACTATGGCAAG
chr12	60581072	60581371	62294805	62295104	-	3299	299	14	L1HS	"COLO2T,COLO2N"	565	296	L1HS	LINE:dbRIP	"DKFZp761E1217,FAM19A2"		c12p60581221FS	ATATCCATTTTTGGCCTTACTATG	c12p60581221ES	GCTTCTGGAGAAAATAAGTTTTTG
chr12	62734472	62734815	64448205	64448548	-	16	343	2	L1PA2	"COLO2T,COLO2N"	12	109	L1PA2		SRGAP1		c12p62734643FS	CCAGTTTCTCCCTATAAACATTTG	c12p62734643ES	TTTGACTTCCTCTTTTCCTAATTG
chr12	62881616	62881992	64595349	64595725	+	336	376	7	L1PA2	"COLO2T,COLO2N"	291	379	"(CAAA)n,L1PA2,AluSx,L2"		C12orf66		c12p62881804FS	GTTTTGTAGAGATGGAGTTTTTCC	c12p62881804ES	TCATTCTCAGTAAACTATCGCAAG
chr12	62967165	62967433	64680898	64681166	-	90	268	3	L1PA2	"COLO2T,COLO2N"	212	268	"(GAA)n,L1PA2,AluSz"	Alu:Hormozdiari	"C12orf56,BC042855"		c12p62967299FS	AGAAAGGAAAAAGAGGAAGAGAAG	c12p62967299ES	ATGATGAGTTTGTGTCCTTTGTAG
chr12	63009483	63009603	64723216	64723336	-	87	120	5	L1PA3	"COLO2T,COLO2N"	39	182	"L2a,L1PA3,(TTTA)n"		"C12orf56,BC042855"		c12p63009543FS	AACTTATACACCAGATAAGCCCAC	c12p63009543ES	TTATTGCAGCATTATTCACGATAG
chr12	63652236	63652605	65365969	65366338	-	257	369	15	L1HS	"COLO2T,COLO2N"	127	369	L1HS		AK123272		c12p63652420FS	TTGAGAAACACAAATGAACAAATC	c12p63652420ES	TTAGTATTTCTGAGGAAGGACAGG
chr12	65207744	65208099	66921477	66921832	+	6686	355	29	L1PA4	"COLO2T,COLO2N"	4436	355	L1PA15		GRIP1		c12p65207921FS	AATACAAAAACATTAGCCGGG	c12p65207921ES	AACACTGCATGTTCTCACTCATAG
chr12	65264422	65265208	66978155	66978941	-	60	786	11	L1PA3	"COLO2T,COLO2N"	19	748	"L2,L1PA3,AT_rich,AluSx,L1PA2"		GRIP1		c12p65264815FS	TAATGCTAGATGACGAGTTAGTGG	c12p65264815ES	TAATGCTAGATGACGAGTTAGTGG
chr12	65609913	65610163	67323646	67323896	-	21	250	3	L1PA3	"COLO2T,COLO2N"	5	65	"L1PA3,L1M6"				c12p65610038FS	ATATTTGCCTGCTCAAGTATTACC	c12p65610038ES	ATGATGAGTTCATGTCCTTTGTAG
chr12	65796830	65797133	67510563	67510866	-	19	303	4	L1PA2	"COLO2T,COLO2N"	23	309	"Arthur1,L1PA2"				c12p65796981FS	ATTTATCTCTTCTGAATGAGTGGC	c12p65796981ES	CAAATCTGTTCAACTGTAATCTGC
chr12	66580186	66580315	68293919	68294048	+	22	129	4	L1PA2	"COLO2T,COLO2N"	5	108	L1PA2				c12p66580250FS	CTAGCAATCAGCGAGACTCTG	c12p66580250ES	TTGTATTTTTCTTGTAACCAACCC
chr12	68283653	68283912	69997386	69997645	-	20	259	4	L1PA3	"COLO2T,COLO2N"	32	172	"L1PA3,L1PA17"				c12p68283782FS	CCATACCTTGCCTTCATATATTTC	c12p68283782ES	CAAATGTCCAACAATGATAGACTG
chr12	68453105	68453506	70166838	70167239	-	935680	401	142	L1HS	"COLO2T,COLO2N"	1098882	540	"L1HS,L1MA6"		RAB3IP		c12p68453305FS	TTCAGATTGAAGAAATCCCTTTAG	c12p68453305ES	GATGAGTTCATATCCTTTGTAGGG
chr12	68486568	68486681	70200301	70200414	-	232	113	13	noL1	"COLO2T,COLO2N"	689	118	"L1PA4,SVA_A"		RAB3IP		c12p68486624FS	ATTCAGAGATTCAACTTCTTCCTG	c12p68486624ES	GGAAAAGAAAGAGAGATCAGATTG
chr12	68540677	68541077	70254410	70254810	-	23	400	3	L1PA3	"COLO2T,COLO2N"	21	400	"L1PA3,L1ME1"				c12p68540877FS	TATCATTGATGGACATTTAGGTTG	c12p68540877ES	AACTAGAAATACCATTTGACCCAG
chr12	68867711	68868039	70581444	70581772	-	2873	328	12	L1PA3	"COLO2T,COLO2N"	5681	183	"L1PA3,MIR"				c12p68867875FS	AAAAGCACTGTTTTACAAAGGAAG	c12p68867875ES	TGTGACTTAACATGATCGTAGGAC
chr12	69340217	69340382	71053950	71054115	+	2288	165	14	noL1	"COLO2T,COLO2N"	777	165	AluSz		PTPRR		c12p69340299FS	TTGTACACACCAGGAATAAAGATG	c12p69340299ES	AAAGCTGACTTAAGAGACCTATGC
chr12	71146854	71147039	72860587	72860772	-	39	185	4	L1PA4	"COLO2T,COLO2N"	23	185	L2a		TRHDE		c12p71146946FS	GTTGCTACAAGTAAATGACACCAG	c12p71146946ES	AATAGGGAATTGAACAATGAGAAC
chr12	71589291	71589514	73303024	73303247	+	25	223	6	L1PA3	"COLO2T,COLO2N"	75	248	L1PA3				c12p71589402FS	AATAGACATAGAAAGCACAAAGGG	c12p71589402ES	ATTGTGTCCAACAATGATAGACTG
chr12	71963369	71963730	73677102	73677463	-	10201	361	18	L1HS	"COLO2T,COLO2N"	2408	485	"L1MA9,L1HS,T-rich"				c12p71963549FS	TAAGGGTCCGATTTTATTATTTTG	c12p71963549ES	TCATTCTCAGTAAACTATCGCAAG
chr12	72047742	72048126	73761475	73761859	+	19	384	3	noL1	"COLO2T,COLO2N"	3	66	"AluSp,AluY,L1ME2"				c12p72047934FS	CTGCAATTTATTTATCCAGACTTC	c12p72047934ES	GAGAAACCCCATCTCTACTAAAAG
chr12	73560897	73561355	75274630	75275088	+	3906	458	41	L1HS	"COLO2T,COLO2N"	3016	458	"L1HS,L1MCa,(A)n"				c12p73561126FS	AAAAGATGTTGAACTTTTTCAAGTG	c12p73561126ES	TCATTCTCAGTAAACTATCGCAAG
chr12	76091095	76091306	77566964	77567175	-	69	211	5	L1PA2	"COLO2T,COLO2N"	106	81	"(TTTG)n,L1PA2,L1P4"				c12p76091200FS	ATTCTCCATAAAAGTGACTTGTCG	c12p76091200ES	TCATCATTCTCAGTAAACTATCGC
chr12	77040778	77041309	78516647	78517178	+	7194	531	2	noL1	"COLO2T,COLO2N"	6032	65	"AT_rich,(TTTTTA)n"		NAV3		c12p77041043FS	TTAGGCAAGTAGGAAGTAAAGAGG	c12p77041043ES	ATGACTTAAGCATTTTGAAAGACC
chr12	77861828	77862037	79337697	79337906	-	213	209	7	noL1	"COLO2T,COLO2N"	14	65	AT_rich	"LINE:Ewing,Iskow,Stewart"	SYT1		c12p77861932FS	CAAACTATATCACCCATCTCACAG	c12p77861932ES	ATTAATGTCCTGAGGCTGAGTTAG
chr12	78094522	78095016	79570391	79570885	-	5222	494	28	L1HS	"COLO2T,COLO2N"	8235	498	"L1HS,L1MC4a"		SYT1		c12p78094769FS	AGCAAGAGATCTAATGTTACCCAG	c12p78094769ES	TCATTCTCAGTAAACTATCGCAAG
chr12	78555402	78556066	80031271	80031935	+	12	664	4	noL1	"COLO2T,COLO2N"	16	660		Alu:Stewart	PAWR		c12p78555734FS	GAGACCAATCTTACACAAGCTTTC	c12p78555734ES	TTCTCTGGTAATACCCTTTTCATC
chr12	79495700	79496006	80971569	80971875	-	47	306	4	L1PA4	"COLO2T,COLO2N"	33	306	"L4,L1PA4"				c12p79495853FS	ATGGGAACTACAATTCAAGATGAG	c12p79495853ES	AATTTATTTTAAAAACCAAACACCC
chr12	79503444	79503614	80979313	80979483	-	14	170	2	L1PA2	"COLO2T,COLO2N"	6	95	L2a				c12p79503529FS	AAAGAAATTGTTAATCTTCCTCCC	c12p79503529ES	TCATTCTCAGTAAACTATCGCAAG
chr12	81412563	81412685	82888432	82888554	+	15	122	2	L1PA4	"COLO2T,COLO2N"	18	122	L1MA8				c12p81412624FS	AATTTCTGTAGGTGGTCTCTTCAC	c12p81412624ES	TAATGCTAAATGACGAGTTAATGG
chr12	81855623	81855881	83331492	83331750	-	18	258	3	noL1	"COLO2T,COLO2N"	5	259	"(TA)n,(TG)n,AluSx1"		TMTC2		c12p81855752FS	TCTGAAATAGTGGAGGTTTAGGAC	c12p81855752ES	CAATTGTATTCTGCAATCTCTGAC
chr12	82151049	82151218	83626918	83627087	-	59	169	3	L1PA4	"COLO2T,COLO2N"	72	170	L1PA7				c12p82151133FS	GAGTGAATGGTTCTGTCTCACTG	c12p82151133ES	ATGATGAGTTCATGTCCTTTGTAG
chr12	82368678	82369088	83844547	83844957	+	100664	410	83	L1HS	"COLO2T,COLO2N"	93270	409	L1HS	LINE:dbRIP			c12p82368883FS	TAACATGTTTACTCTTCCCCTACC	c12p82368883ES	TCATTCTCAGTAAACTATCGCAAG
chr12	82423213	82423334	83899082	83899203	+	14	121	2	L1PA4	"COLO2T,COLO2N"	23	121	"HERVL-int,L1PA4"				c12p82423273FS	CTCTCATCCTACTAGTCAAGGAGC	c12p82423273ES	ATAGACTGGATTAAGGAAATGTGG
chr12	82594360	82594744	84070229	84070613	+	4771	384	52	L1HS	"COLO2T,COLO2N"	5976	384	"L1HS,(A)n,L2c"				c12p82594552FS	GAAACAAAACAAGTGAACAAACAC	c12p82594552ES	ATGATGAGTTCATGTCCTTTGTAG
chr12	82606983	82607200	84082852	84083069	+	18	217	3	L1PA6	"COLO2T,COLO2N"	40	345	"L1MA3,L1PA6"				c12p82607091FS	TCAAGTTTATTTAGAACCCCAGAG	c12p82607091ES	CAGAAAGGAAAGAAACTAATGCTC
chr12	83171901	83172023	84647770	84647892	-	156	122	9	L1HS	"COLO2T,COLO2N"	42	117	"L1MD2,L1HS,L1PA4"				c12p83171962FS	TATGAAGCAGAGACTAAGGTTTTC	c12p83171962ES	AAGTATTAGAAGGTCTCCATGAGC
chr12	83479056	83479339	84954925	84955208	-	17	283	3	noL1	"COLO2T,COLO2N"	260	67		"LINE:dbRIP,Ewing,Iskow,Stewart"			c12p83479197FS	AAGAGGAGTCTAGGAAGAGTCCAG	c12p83479197ES	TTTCCATGGTAAGTAGAATGAAGG
chr12	83489329	83489597	84965198	84965466	+	1065	268	9	noL1	"COLO2T,COLO2N"	726	227	LTR67B	"LINE:Ewing,Iskow,Stewart"			c12p83489463FS	TGCATCCAGTCTAACAAAATACTG	c12p83489463ES	TGTTCTGCAACTACTTCTAGCATC
chr12	83850896	83851516	85326765	85327385	+	314	620	8	L1PA2	"COLO2T,COLO2N"	192	82	"L1PA2,AluSx1,L1PA7,A-rich"				c12p83851206FS	CATCAGAATGAAGTTATTCAGGC	c12p83851206ES	GAGAGGAAGTAAGCACAGAAAGAG
chr12	84030468	84030637	85506337	85506506	+	1290	169	9	noL1	"COLO2T,COLO2N"	1746	113		"LINE:Ewing,Stewart"	LRRIQ1		c12p84030552FS	CTGGTCTGAACATTTGTACTCAAG	c12p84030552ES	TCTTGCATAGTTTATCATCTCCTG
chr12	85157873	85158164	86633742	86634033	+	186	291	12	L1HS	"COLO2T,COLO2N"	431	323	"(CA)n,L1HS,(TAAAA)n"		MGAT4C		c12p85158018FS	ATAAGAGCAGAATCTGAATTTTGG	c12p85158018ES	GATCTTATCCCTCTCTTCTCAGTG
chr12	85503628	85504141	86979497	86980010	-	46	513	3	noL1	"COLO2T,COLO2N"	108	515	"L1PA3,(T)n"		MGAT4C		c12p85503884FS	CTTGTCTTCATTTTTCTTTAAGGC	c12p85503884ES	TACCCAAAGGACTATAAATCATGC
chr12	86112189	86112487	87588058	87588356	+	72	298	9	L1PA2	"COLO2T,COLO2N"	82	501	"L1PA2,MLT1J2"				c12p86112338FS	AAGCCCACAATACTTTAAAATCAC	c12p86112338ES	TCATTCTCAGTAAACTATCGCAAG
chr12	86465898	86466528	87941767	87942397	+	59	630	4	L1PA4	"COLO2T,COLO2N"	77	969	"L1MA3,L1PA4"				c12p86466213FS	TTAAATATGTCATGCCACTCTGTC	c12p86466213ES	AAAATCAAGCAGAAATTCTAGAGC
chr12	86664200	86664655	88140069	88140524	-	14	455	6	noL1	"COLO2T,COLO2N"	24	70	AT_rich				c12p86664427FS	TGCTCAGGTAAATGACTAGATTTG	c12p86664427ES	TGCTACTTTGTTATCCATTGTGAC
chr12	86665277	86665522	88141146	88141391	-	1194	245	12	L1HS	"COLO2T,COLO2N"	1542	75	"L1HS,AT_rich"				c12p86665399FS	TTATTTAAATTTTTCTGTAGGGGC	c12p86665399ES	GATGAGTTCATATCCTTTGTAGGG
chr12	87540742	87541133	89016611	89017002	+	24	391	4	L1PA2	"COLO2T,COLO2N"	49	408	"(CAAAAA)n,L1PA2,MSTA"				c12p87540937FS	ATCCAGGTAGTGTTCATATGTGTG	c12p87540937ES	TCATTCTCAGTAAACTATCGCAAG
chr12	88377271	88377535	89853140	89853404	+	22	264	6	L1PA4	"COLO2T,COLO2N"	29	263	L1PA4		"WDR51B,TUWD12"		c12p88377403FS	AAAGTGAAAACCTTTTATTTCTGG	c12p88377403ES	GGACAAATAACACAATAGGGAATC
chr12	88713681	88713799	90189550	90189668	-	103	118	4	L1PA4	"COLO2T,COLO2N"	130	118	MSTA				c12p88713740FS	GTGCTGTATATTGATGGTTAGTCC	c12p88713740ES	TCTCTCTCTCTCTCTTTCTTGCTC
chr12	89370609	89370713	90846478	90846582	+	468	104	9	noL1	"COLO2T,COLO2N"	481	113	"(A)n,AluYa5"	Alu:dbRIP			c12p89370661FS	TTGTAACATCTGTAATTGACCACC	c12p89370661ES	TTTTATTGAAGAAGAAACAGGCTC
chr12	89460489	89460718	90936358	90936587	+	1219	229	18	L1PA2	"COLO2T,COLO2N"	1546	224	"L1PA2,(A)n,L3,MER112"				c12p89460603FS	CAATGCAGAAAGCATGATAGTAAG	c12p89460603ES	CAAATGTCCAACAATGATAGACTG
chr12	90082229	90082670	91558098	91558539	+	21815	441	37	L1HS	"COLO2T,COLO2N"	19259	438	"L1HS,(A)n"		DCN	"DCN.1,DCN.5"	c12p90082449FS	AAGCAAAAATTTTACCCTACAATG	c12p90082449ES	CCTACCACTGCTAAAAAGGTAAAC
chr12	90203832	90204217	91679701	91680086	+	119	385	6	L1PA2	"COLO2T,COLO2N"	358	385	"(GAAA)n,L1M4c,L1ME3B,L1PA2"				c12p90204024FS	GGCACTGAAGTTTCCAAATATTAC	c12p90204024ES	TCATTCTCAGTAAACTATCGCAAG
chr12	90667585	90667703	92143454	92143572	-	763	118	22	L1PA4	"COLO2T,COLO2N"	1865	120	"L1PA4,L1MC4a,(TC)n"				c12p90667644FS	TATGAAAATTTGAAGGGAAGAGAG	c12p90667644ES	TGATGACTGGATTAAGAAAATGTG
chr12	91237873	91238232	92713742	92714101	+	21	359	5	L1PA2	"COLO2T,COLO2N"	45	395	"L1PB1,L1PA2"				c12p91238052FS	TGGAAAAACCCTTCTAGACATTAG	c12p91238052ES	TCATTCTCAGTAAACTATCGCAAG
chr12	91595452	91596149	93071321	93072018	-	187	697	5	L1PA3	"COLO2T,COLO2N"	280	701	"L1PA3,MIR,L1PA4"				c12p91595800FS	AACTTCTCTAGGCTTCTGTTACCC	c12p91595800ES	AATGCTAGATGACAAGTTAGTGGG
chr12	92178997	92179158	93654866	93655027	-	166	161	9	L1PA3	"COLO2T,COLO2N"	87	194	"L1PA3,MER31-int"				c12p92179077FS	AGTCTCCAGTGATAAGAATTGTCC	c12p92179077ES	TTTAACTAGTCTTGGTTGCTGAAG
chr12	93620673	93620938	95096542	95096807	+	49	265	7	L1HS	"COLO2T,COLO2N"	51	160	L1HS				c12p93620805FS	GTAGTATGATAAAAGGCAGGGATG	c12p93620805ES	TGCGTAGAGTTCCTAAAATTTCTC
chr12	95552300	95552533	97028169	97028402	-	27	233	4	noL1	"COLO2T,COLO2N"	21	114	L1MD1		BC041426		c12p95552416FS	CTCTAATGGCTAATGATAGCGAAC	c12p95552416ES	AGTGATTCAATGGAAGAAGGATAG
chr12	95889459	95889675	97365328	97365544	-	70	216	5	noL1	"COLO2T,COLO2N"	989	264		"LINE:Ewing,Iskow,Stewart"			c12p95889567FS	GCAGACCCTGATTAAATATAGTGG	c12p95889567ES	GATGGCACATAAAGTAGTCAACAG
chr12	96033203	96033444	97509072	97509313	+	14	241	4	L1PA3	"COLO2T,COLO2N"	6	148					c12p96033323FS	CTAATATGTTGATTATCACACGGG	c12p96033323ES	ATGATGAGTTCATGTCCTTTGTAG
chr12	96635324	96635896	98111193	98111765	-	65009	572	60	L1HS	"COLO2T,COLO2N"	34977	646	"AluJb,L1HS"		AK098641		c12p96635610FS	TGTTACTTAGCCTCTGGAAAACTC	c12p96635610ES	TAATGCTAGATGACACGTTAGTGG
chr12	96647754	96648036	98123623	98123905	+	477	282	12	L1PA3	"COLO2T,COLO2N"	379	259	L1PA3		"AK098641,BC024008"	BC024008.L	c12p96647895FS	GAACCCATTAGGTTACTACTGAGC	c12p96647895ES	TCATTCTCAGTAAACTATCGCAAG
chr12	97197021	97197573	98672890	98673442	+	255199	552	111	L1HS	"COLO2T,COLO2N"	245589	550	"L2a,L1HS,AluY"				c12p97197297FS	TACCATTCTCTAGGAACTCTGTCC	c12p97197297ES	ACACCGCATATTCTCACTCATAG
chr12	97240134	97240592	98716003	98716461	+	12	458	2	noL1	"COLO2T,COLO2N"	25	458	"L1MEe,AT_rich,L1MA4A"				c12p97240363FS	TAAAGTTTGTTACCAGAGTAGGGC	c12p97240363ES	CAAATTAATCAACAAAGTCAATGC
chr12	97376579	97376899	98852448	98852768	+	51	320	7	L1PA3	"COLO2T,COLO2N"	48	148	"L1PA3,AluSx"				c12p97376739FS	TTAAAATACAAAAATTAGCTGGGC	c12p97376739ES	ATGAAATTGGAAATCATCTTTCTC
chr12	100069913	100070315	101545782	101546184	+	796199	402	39	L1HS	"COLO2T,COLO2N"	1923287	405	"L1HS,L1PA2"				c12p100070114FS	AATTCTCTCTTTTGGTTGTGTCTC	c12p100070114ES	TCATTCTCAGTAAACTATCGCAAG
chr12	101366568	101367113	102842438	102842983	+	391229	545	47	L1HS	"COLO2T,COLO2N"	346933	552	"L1HS,L1PA7"		IGF1		c12p101366840FS	ATGTGTTCTCATTGTTCAACTCAC	c12p101366840ES	ACACCGCATATTCTGACTCATAG
chr12	102205573	102205699	103681443	103681569	+	79	126	4	L1PA4	"COLO2T,COLO2N"	71	136	L1PA4		C12orf42		c12p102205636FS	GGTTCTGTGATTCTGCCTAGTAAC	c12p102205636ES	CAAATGTCCAACAATGATAGACTG
chr12	104552205	104552501	106028075	106028371	+	29	296	2	L1PA2	COLO2T	0	0	L1PA2				c12p104552353FS	GTCCATCAGGACAGAAATCTTATC	c12p104552353ES	TCATTCTCAGTAAACTATCGCAAG
chr12	106762642	106763015	108238512	108238885	-	10	373	3	L1HS	"COLO2T,COLO2N"	2	238	"L1HS,AluSx"				c12p106762828FS	GACTCTAATGTGGGAAGTCTGG	c12p106762828ES	GTATGGGAACTCTAACACCAATG
chr12	107925153	107925369	109440768	109440979	+	72	216	6	L1PA2	"COLO2T,COLO2N"	71	244	"(TAAA)n,L1PA2,MER5A1"		SVOP		c12p107925261FS	TACTCCAAACTCAAGGTAGAGAGG	c12p107925261ES	ATGAAATTGGAAATCATCTTTCTC
chr12	109659626	109659986	111175243	111175603	+	16	360	2	noL1	"COLO2T,COLO2N"	9	360	"AluJr,AluSx"		PPP1CC		c12p109659806FS	TCAGTGGTATATTACCGAAATGTG	c12p109659806ES	ATAAACGACTGAGTTCTTTTCTGC
chr12	113005848	113006037	114521465	114521654	-	17	189	2	L1PA3	"COLO2T,COLO2N"	1	65	"L1PA3,Tigger3b"				c12p113005942FS	TGTGTGCTGACATCTTAGCTTAAC	c12p113005942ES	TCATTCTCAGTAAACTATCGCAAG
chr12	116177367	116177577	117692984	117693194	+	26	210	6	L1PA3	"COLO2T,COLO2N"	24	313	A-rich		"NOS1,nNOSmu"		c12p116177472FS	AAGGGTAATAACAAAAAGGAAAGC	c12p116177472ES	CTAGAAAGTTCTTCTGGACAGTGC
chr12	116298503	116298861	117814120	117814478	-	3049	358	24	noL1	"COLO2T,COLO2N"	3929	254	LTR33	"LINE:Beck,Ewing,Iskow,Stewart"			c12p116298682FS	CATTTCTTATTTTCGTAGGCTCAG	c12p116298682ES	ACTTCTATCCTATTGCTACCTCCC
chr12	116671323	116671640	118186940	118187257	+	29096	317	35	noL1	"COLO2T,COLO2N"	44798	360	MIR3	"LINE:Ewing,Stewart"	KSR2		c12p116671481FS	GTCACATTCTTATTGAAACAGCAG	c12p116671481ES	ATATTTGAGAGGTGATCCTAGCAG
chr12	117599596	117599719	119115213	119115336	-	12	123	3	L1PA4	"COLO2T,COLO2N"	2	65	L1PA4				c12p117599657FS	AGACTGCTCAGTTTTCTCTCTGAC	c12p117599657ES	AAAGAGTTGTTGGCACATATACAC
chr12	118003350	118003529	119518967	119519146	+	22	179	2	noL1	COLO2T	0	0	L2a		KIAA1853		c12p118003439FS	ATCCTACTCAAATTAAGCCACATC	c12p118003439ES	GCCCTAAATCTACTCATTCGTTAG
chr12	119130509	119131037	120646126	120646654	+	84	528	2	noL1	"COLO2T,COLO2N"	233	531	"MER30,AluJb,AluSx1,AluY"		CR607463		c12p119130773FS	GAAACCCCGTTTCTACTAAAAATAC	c12p119130773ES	GAGAAACCCCGTCTCTACTAAAAG
chr12	120512495	120513262	122028112	122028879	-	13	767	4	noL1	"COLO2T,COLO2N"	32	770	"AluSx,(T)n"				c12p120512878FS	AATTGCCTCTTTGGATTGATG	c12p120512878ES	GAGGGCAGTAATTAAAGCCTAAAG
chr12	121517842	121518390	122951889	122952437	-	12	548	2	noL1	"COLO2T,COLO2N"	14	66	AluY				c12p121518116FS	TAAAGATTTACCTAGAGAGGGCTG	c12p121518116ES	CTGCCCTTATTAAAATAGAAAACG
chr12	124483718	124484067	125917765	125918114	-	143	349	6	L1PA2	"COLO2T,COLO2N"	27	352	L1PA2		TMEM132B		c12p124483892FS	ACAGACACACTTCGTAGTTCACTC	c12p124483892ES	GCGTAGGCAGAAGATAGAAAATAC
chr12	125348937	125349557	126782984	126783604	-	3785	620	29	L1HS	"COLO2T,COLO2N"	1959	621	"L1HS,MSTB1,MLT1F1,(T)n,MLT1F1-int"	LINE:dbRIP			c12p125349247FS	ATGTTATCATGAGGTCTCAGTTCC	c12p125349247ES	GAGGGATAGCATTGGGAGATATAC
chr12	125368427	125368915	126802474	126802962	-	22	488	4	noL1	"COLO2T,COLO2N"	35	830	Charlie8	"LINE:Beck,Ewing,Iskow,Stewart"			c12p125368671FS	AAAAATGGGATCCTTTTAAATCTC	c12p125368671ES	GCAAATCTATCCTTCCATAATCAC
chr12	128088033	128088219	129522080	129522266	-	26	186	2	L1PA4	"COLO2T,COLO2N"	1	65	"(T)n,L1PA4"				c12p128088126FS	ATATGCTGTCTGAGGAATAGAAGG	c12p128088126ES	AACTAGAAATACCATTTGACCCAG
chr12	128106122	128106410	129540169	129540457	-	161	288	5	L1PA4	"COLO2T,COLO2N"	134	408	"MLT1N2,L1PA4"				c12p128106266FS	GACCATTCCTTTCTAAACTAGCAC	c12p128106266ES	ATACACCATGGAATACTATGCAGC
chr12	128540909	128541112	129974956	129975159	-	28	203	2	noL1	"COLO2T,COLO2N"	5	67	"MER102c,AluY"		TMEM132D		c12p128541010FS	TTTTAAGTGGTTTTCTTTTTCTGG	c12p128541010ES	AGCTGGTGTCATTAAAGGACTAAG
chr12	129638289	129638639	131072336	131072686	+	19	350	6	L1PA2	"COLO2T,COLO2N"	12	349	"L2c,L1PA2"		RIMBP2		c12p129638464FS	CCATTTCAGTGTAGTGAACTCAAG	c12p129638464ES	TCATTCTCAGTAAACTATCGCAAG
chr12	131206929	131207169	132640976	132641216	-	13	240	2	noL1	COLO2T	0	0	"(CA)n,(CACTA)n"				c12p131207049FS	no primer	c12p131207049ES	no primer
chr13	21033503	21033895	22135503	22135895	-	679	392	17	L1PA3	"COLO2T,COLO2N"	374	289	"L1PA3,L1MCa"		EFHA1		c13p21033699FS	TGAGATGTTTCAGCTATCTTTTTG	c13p21033699ES	TCATTCTCAGTAAACTATCGCAAG
chr13	21387848	21388050	22489848	22490050	+	40	202	2	noL1	"COLO2T,COLO2N"	38	67	(TCCA)n	"LINE:Ewing,Iskow,Stewart"			c13p21387949FS	AAAAAGTTTTCTCAAGAAATGGAG	c13p21387949ES	CATCATGAAGATTAAATGAGATGG
chr13	23357821	23358079	24459821	24460079	+	58	258	7	noL1	"COLO2T,COLO2N"	75	259	"AT_rich,FLAM_C"		MIPEP		c13p23357950FS	TTAAAAATGTCTGAAACTGAGATCC	c13p23357950ES	AAAACAGGAAGATTGAGTAAGACC
chr13	24815368	24815504	25917368	25917504	-	12	136	2	L1PA3	"COLO2T,COLO2N"	12	173	"L1PB1,L1PA3,AT_rich"				c13p24815436FS	GGTTAAAAAGTTTGTGTTCTGGAC	c13p24815436ES	CACTAAAAAGGAATGGATGAATTG
chr13	26386107	26386289	27488107	27488289	+	220	182	7	noL1	"COLO2T,COLO2N"	96	329	MLT1A0	"LINE:Ewing,Iskow,Stewart"			c13p26386198FS	GGTCCTACATGAACATAAACACAG	c13p26386198ES	AGGTTGCTTTGATTTGAATATCTG
chr13	28195239	28195553	29297239	29297553	-	61	314	7	L1PA2	"COLO2T,COLO2N"	106	320	L1PA2				c13p28195396FS	TCATAAGTTAAAGGAGGCAGATTC	c13p28195396ES	CAAGACATTTACTTACCTTCTGGG
chr13	28375266	28375410	29477266	29477410	-	36	144	2	L1PA4	COLO2T	0	0	"L1MD2,L1PA4"				c13p28375338FS	TTTGGGAAGTGTTTTCTTATTTTC	c13p28375338ES	CAAATGTCCAACAATGATAGACTG
chr13	28465573	28466058	29567573	29568058	-	11	485	2	L1PA4	"COLO2T,COLO2N"	2	65	"L1M4c,L1P4,L1PA4"				c13p28465815FS	AGCAGCTGTACCATTTTATAATCC	c13p28465815ES	AACACTGCATGTTCTCACTCATAG
chr13	28886560	28886843	29988560	29988843	+	8639	283	11	L1HS	"COLO2T,COLO2N"	10160	283	"L1HS,AT_rich,L1MC4a"		KIAA0774		c13p28886701FS	TTAAACAACTCTTGAGTGAAAGGG	c13p28886701ES	TCATTCTCAGTAAACTATCGCAAG
chr13	30780433	30780919	31882433	31882919	+	3007	486	25	L1HS	"COLO2T,COLO2N"	3265	486	"L1HS,MER21-int"		"B3GALTL,Glc-T"		c13p30780676FS	TTAGACCGTGACACTACATACACC	c13p30780676ES	TCATTCTCAGTAAACTATCGCAAG
chr13	30876832	30877136	31978832	31979136	+	4882	304	10	noL1	COLO2T	0	0	"AluSx1,MER57-int"				c13p30876984FS	TTCTATTGTTCGTAGAGGCATAAG	c13p30876984ES	AATTAAAGCTTCAGGTACATTTGG
chr13	32339198	32339893	33441198	33441893	-	34065	695	22	L1HS	"COLO2T,COLO2N"	25393	434	"L1HS,MIRb"				c13p32339545FS	TTCTAGAATTCTCTCTCACTTGCC	c13p32339545ES	TGGGAGATATACCTAATGCTAGATG
chr13	33095015	33095584	34197015	34197584	+	12	569	2	noL1	"COLO2T,COLO2N"	4	65	"AluSc8,AluSc5,L1ME2"		STARD13		c13p33095299FS	CCTGACAAAGGTTTTGTATGTATG	c13p33095299ES	ACATGGTAAAACCCCATCTCTAC
chr13	33952013	33952451	35054013	35054451	-	49343	438	25	L1HS	"COLO2T,COLO2N"	78148	439	L1HS				c13p33952232FS	GCTTCTATACACATTGAACGACTG	c13p33952232ES	TGAGTTCATATCCTTTGTAGGGAC
chr13	34373128	34373266	35475128	35475266	-	421	138	3	L1PA3	"COLO2T,COLO2N"	195	138	"L2a,(TTTTA)n,L1PA3"				c13p34373197FS	TATTGCATTCAAGTTGTTTTCATC	c13p34373197ES	AGGGTCAAGAAAGCTTAAAAATG
chr13	34581940	34582253	35683940	35684253	-	4445	313	20	L1HS	"COLO2T,COLO2N"	3248	176	"L1HS,AT_rich,L1P"		NBEA		c13p34582096FS	GTTAATCTGTGGCAATTGTGTTAG	c13p34582096ES	CATAGCAATAGAACATCAGTCAGC
chr13	36525402	36525849	37627402	37627849	+	28	447	2	L1PA8	"COLO2T,COLO2N"	57	65	L1PA8		FAM48A		c13p36525625FS	TGATGGTAGTTTGTATTTCTGTGG	c13p36525625ES	GCAGTCATTAAAAAGTCTGGAAAC
chr13	36933502	36933826	38035502	38035826	-	521	324	8	L1PA3	"COLO2T,COLO2N"	680	325	"L1PA3,L1MB2,(TTG)n,L1M5"				c13p36933664FS	TTTCTTCTTTGCATGACTGAATAG	c13p36933664ES	AACACAGCATGTTCTCACTCATAG
chr13	37374796	37374912	38476796	38476912	+	14	116	2	L1PA6	COLO2T	0	0	"AluSz,L1PA6"				c13p37374854FS	GACTCTGATGACGTGTATGTTAGC	c13p37374854ES	GACTGGATTAAGAAAATATGGCAC
chr13	37543699	37543979	38645699	38645979	+	458	280	6	L1PA3	"COLO2T,COLO2N"	181	277	"(TAAAAA)n,L1MEg,AluSq"				c13p37543839FS	ATGACAGAAGAAATACGGAAAGTC	c13p37543839ES	AACACAGCATGTTCTCACTCATAG
chr13	39270868	39271038	40372868	40373038	-	334	170	9	L1PA4	"COLO2T,COLO2N"	182	164	"AluSc8,L1PA4"				c13p39270953FS	TTGGGAAACTATACAACTTTCTGG	c13p39270953ES	TAAGCAAATGTGGCAAATATACAC
chr13	39456913	39457247	40558913	40559247	+	93	334	10	noL1	"COLO2T,COLO2N"	34	314	"AluSz6,L1MC3"				c13p39457080FS	AGATAGACTTCCCATTTCAAACAG	c13p39457080ES	AACATGGAAAAATCCTGTCTCTAC
chr13	39458308	39458610	40560308	40560610	-	919	302	11	L1HS	"COLO2T,COLO2N"	697	446	"L2a,L1HS"				c13p39458459FS	TCCCCTAGAATATTGTAAAGCAAC	c13p39458459ES	TCATTCTCAGTAAACTATCGCAAG
chr13	39476398	39476557	40578398	40578557	-	292	159	7	L1PA3	"COLO2T,COLO2N"	287	379	AT_rich				c13p39476477FS	AAAAACATTTCAATTTTCAAGAGC	c13p39476477ES	TCCTTTTTAGGGACATAGATGAAG
chr13	41403245	41403433	42505245	42505433	+	34	188	3	noL1	"COLO2T,COLO2N"	90	70	"L1MA9,AluSc"		KIAA0564		c13p41403339FS	GAAGCAAATTAACATATCCATCATC	c13p41403339ES	CACAACTGGACTTCATGTTTAGAG
chr13	41669363	41669819	42771363	42771819	+	411	456	4	noL1	"COLO2T,COLO2N"	686	67	"AluJb,AluSx"	LINE:Ewing	"DGKH,DGKH-1"		c13p41669591FS	ACACGAGGAAATTAGAAAAACAAG	c13p41669591ES	TTAGAAAATATTAACATGGCTGGG
chr13	42030203	42030533	43132203	43132533	+	84	330	5	L1PA3	"COLO2T,COLO2N"	45	330	"L1PA3,AluSz"				c13p42030368FS	TACCCTGTTTACTCAAGTAGAGGC	c13p42030368ES	ACACTGCATATTCTCACTCATAGG
chr13	43438641	43438990	44540641	44540990	-	61	349	7	L1PA2	"COLO2T,COLO2N"	20	301	"L1PA2,(T)n,L1MC4"				c13p43438815FS	TCTCTGGCCATTAGTTCTTTTAAC	c13p43438815ES	ATGATGAGTTCATGTCCTTTGTAG
chr13	47076600	47076701	48178599	48178700	+	21	101	2	L1PA2	"COLO2T,COLO2N"	39	671	"L1PA2,L1MA4"				c13p47076650FS	TTACAGGTAGTCACTGGATTTTTG	c13p47076650ES	ATGTTGCTATAAAGACACATGCAC
chr13	47164771	47165018	48266770	48267017	-	311	247	9	L1PA7	"COLO2T,COLO2N"	277	247	"(TTTG)n,L1PA3,MSTB"	LINE:Ewing			c13p47164894FS	ACATAGGAACAGAAAACCAAACAC	c13p47164894ES	AAATATTTTGCAGATGGGATTAAG
chr13	47552506	47552944	48654505	48654943	+	291	438	2	noL1	"COLO2T,COLO2N"	489	65	"T-rich,AluSx"		MED4		c13p47552725FS	TAACTTCTGAAGGTGCTGTGTTAC	c13p47552725ES	AAAAATAAGAAAATTAGTCAGGCG
chr13	47754546	47754833	48856545	48856832	+	15238	287	18	noL1	"COLO2T,COLO2N"	23975	286	Charlie1b	"LINE:dbRIP,Ewing,Stewart"			c13p47754689FS	AAGTTACAAACTTCACAGGTAGCC	c13p47754689ES	AGTTTTATCAGTGTTCTTTCCTGG
chr13	47943659	47944068	49045658	49046067	+	3005	409	21	L1HS	"COLO2T,COLO2N"	1440	244	"L1HS,AT_rich"		RB1		c13p47943863FS	TAGCTAATCTGCCTCCTACTTCAC	c13p47943863ES	TCATTCTCAGTAAACTATCGCAAG
chr13	49239134	49239578	50341133	50341577	-	30	444	5	noL1	"COLO2T,COLO2N"	83	449	"AT_rich,AluSx1"		KPNA3		c13p49239356FS	CAAAAATTAAAGCTTGTTTTACCC	c13p49239356ES	TTGTGGCTTTAATACCTAAGAAGG
chr13	50364896	50365125	51466895	51467124	-	11	229	7	L1PA3	"COLO2T,COLO2N"	6	72	"L1PA3,L2"				c13p50365010FS	CAGAAATCACTCACTCTGTGAAAG	c13p50365010ES	ATTTTTCATATCTTTGGCATTTTC
chr13	51741679	51741834	52843678	52843833	-	15	155	5	L1PA2	"COLO2T,COLO2N"	62	341	"L1PA2,L1PA12"		DKFZp434F1622		c13p51741756FS	CAAAGATCAATAGGAGAAGCACTG	c13p51741756ES	CGTATGTTTATTGTGGCATTATTC
chr13	52985553	52985685	54087552	54087684	+	382	132	6	noL1	"COLO2T,COLO2N"	253	383					c13p52985619FS	TACCTGGGTAAGTAAAACAAGCTC	c13p52985619ES	GCATCAAATGAAACAACTCTCTAC
chr13	53719685	53719859	54821684	54821858	+	14	174	3	noL1	"COLO2T,COLO2N"	14	823					c13p53719772FS	TGTCCCTACAAAGGATATGAACTC	c13p53719772ES	ATTTAATAAAATGGAGCAGTGGAG
chr13	53761653	53761882	54863652	54863881	-	12256	229	14	noL1	"COLO2T,COLO2N"	3776	227	"L1PB3,AluYb8"				c13p53761767FS	AATCCCTTGATCTCATGATTTG	c13p53761767ES	AAGAAATTCGTAGAGAAACTTTGC
chr13	55029944	55030105	56131943	56132104	+	31	161	2	L1PA4	"COLO2T,COLO2N"	44	65					c13p55030024FS	TTGATGCCAGTATACTTTTTGTTG	c13p55030024ES	AAAAGATGAGTTCATATCCTTTGC
chr13	56050325	56050506	57152324	57152505	+	76	181	4	L1PA3	"COLO2T,COLO2N"	18	179	"L1PA3,AT_rich"				c13p56050415FS	TTTTTAGTAGAGATGGGGTTTCAC	c13p56050415ES	CAAATGTCCAACAATGATAGACTG
chr13	56691079	56691515	57793078	57793514	-	5859	436	15	L1HS	"COLO2T,COLO2N"	1807	436	L1HS	LINE:dbRIP			c13p56691297FS	TTAAAAACTTTACGGAACTATGGC	c13p56691297ES	TCATTCTCAGTAAACTATCGCAAG
chr13	57986333	57986967	59088332	59088966	+	62325	634	42	L1HS	"COLO2T,COLO2N"	57087	531	"L1PB1,L1HS"				c13p57986650FS	TACCTTCCCCACTTTATATTTTTG	c13p57986650ES	GAGGGATAGCATTGGGAGATATAC
chr13	58333397	58333643	59435396	59435642	-	627	246	12	L1PA4	"COLO2T,COLO2N"	572	344	LTR1				c13p58333520FS	AAGTAGCTCTCAGCAGATCAGG	c13p58333520ES	GAGAACACATAGACACAGGAAGTG
chr13	58498421	58498741	59600420	59600740	-	80	320	3	L1PA2	"COLO2T,COLO2N"	68	319	"L1PA2,AT_rich"				c13p58498581FS	AATATCAGAGGAGAAAGATGAACG	c13p58498581ES	TTTGTAGAGACATGGATGAAATTG
chr13	59184692	59184841	60286691	60286840	-	1421	149	5	noL1	COLO2T	0	0	L2b		"diap3,DIAPH3"		c13p59184766FS	AGAGGCAGAAGATACATCATTAGG	c13p59184766ES	AGGTACTGGTTAGCAGCATGTTAG
chr13	59320102	59320503	60422101	60422502	-	35	401	7	L1PA2	"COLO2T,COLO2N"	69	401	"L2a,L1PA2"		DIAPH3		c13p59320302FS	TTAAGCACAGACTGACTGACTTTC	c13p59320302ES	GATGAGTTCATATCCTTTGTAGGG
chr13	60118546	60119193	61220545	61221192	-	243274	647	27	noL1	"COLO2T,COLO2N"	120713	266	L2c	"LINE:dbRIP,Ewing,Stewart"			c13p60118869FS	ATTTATTTCCTTCCCCTAGTTACC	c13p60118869ES	TTGATGCAGCGAATTATATTAGAG
chr13	60212663	60212944	61314662	61314943	-	12	281	5	L1PA3	"COLO2T,COLO2N"	8	216	"L1PA3,THE1-int"				c13p60212803FS	TCCCAAACATCAATTCTTAACTTC	c13p60212803ES	TAGACTGGATTAAGAAAATGTGGC
chr13	60284277	60284694	61386276	61386693	-	23	417	3	L1PA4	COLO2T	0	0	"L1PA4,MER96B"				c13p60284485FS	ATATAATGATTAACCTAAGCCCCC	c13p60284485ES	CTGCATGTTCTCACTCATAGGTAG
chr13	60359955	60360325	61461954	61462324	-	78190	370	37	noL1	"COLO2T,COLO2N"	87600	368		"LINE:dbRIP,Ewing,Iskow,Stewart"			c13p60360140FS	ATTAAAAACTGAACCAGGTAATGC	c13p60360140ES	CACAACTAAATTTTCCAGATACCC
chr13	60632486	60632931	61734485	61734930	+	36498	445	53	noL1	"COLO2T,COLO2N"	20240	437	LTR33	"LINE:Ewing,Iskow,Stewart"			c13p60632708FS	TTAAACCTTATGATGCAAAGACAG	c13p60632708ES	AAGAAAATGCAGAGGATTACAGTG
chr13	62465006	62465322	63567005	63567321	-	31	316	3	noL1	COLO2T	0	0	L1PB3				c13p62465164FS	CCTAATTTGTTGAGGGTTTTTATC	c13p62465164ES	AGAAGAACAAACAAAACTCAAAGC
chr13	62670219	62670508	63772218	63772507	+	18	289	3	L1PA4	"COLO2T,COLO2N"	19	229	L1PA4				c13p62670363FS	AATTTGCATTCCTAATGTGAAAAC	c13p62670363ES	AACCATCATTCTCAGCAAACTATC
chr13	63437936	63438169	64539935	64540168	+	15	233	4	L1PA3	"COLO2T,COLO2N"	6	69	MLT1K				c13p63438052FS	CTGATCAAAGCAATACTTGAAATG	c13p63438052ES	TGAAGAATTTTGAGGGTTTTTAAG
chr13	64446789	64447192	65548788	65549191	-	1246	403	13	noL1	"COLO2T,COLO2N"	700	408	L1PA16	LINE:Ewing			c13p64446990FS	AGTTTTCTCCTGATGTAAACTTGG	c13p64446990ES	AAAGGTATTAGAGCATAGTGGCAG
chr13	65086205	65086329	66188204	66188328	-	22	124	2	L1PA3	"COLO2T,COLO2N"	6	159	"L1MB8,L1PA3"				c13p65086267FS	TATTAAGTGTTTGGAAGGTTCCTC	c13p65086267ES	AACACTGCATGTTCTCACTCATAG
chr13	65177271	65177569	66279270	66279568	-	38	298	3	L1PA3	"COLO2T,COLO2N"	36	298	L1PA3				c13p65177420FS	TTTCACTACAACAGGTTTATGCAC	c13p65177420ES	TCATTCTCAGTAAACTATCGCAAG
chr13	65498550	65498782	66600549	66600781	+	12	232	2	L1PA3	"COLO2T,COLO2N"	3	65	Tigger1				c13p65498666FS	AGAATTTTTGGAATGGTAAATGAG	c13p65498666ES	AAATGATGAGTTCATGTCCTTTG
chr13	65725775	65725935	66827774	66827934	-	46	160	5	L1PA3	"COLO2T,COLO2N"	15	159	"L1PA3,MIRb"				c13p65725855FS	ATAAAATGCTTGAAATAGCACCTC	c13p65725855ES	TCATTCTCAGTAAACTATCGCAAG
chr13	66343716	66343864	67445715	67445863	+	21	148	2	L1PA3	"COLO2T,COLO2N"	40	245			PCDH9		c13p66343790FS	TCAGTCTCTAGTGCTGTTTCAGAC	c13p66343790ES	AATGCTAAATGACAAGTTAATGGG
chr13	68950954	68951499	70052953	70053498	-	12	545	2	noL1	"COLO2T,COLO2N"	3	545	L1PA5				c13p68951226FS	AAATGTCTTCTTTGGAGAAGTGTC	c13p68951226ES	CTGCTCAATGAAATAAAAGAGGAC
chr13	71672591	71672700	72774590	72774699	-	10	109	2	L1PA4	"COLO2T,COLO2N"	3	65	L1PA4				c13p71672645FS	TATTTTCTGATGGAGACAATTCAG	c13p71672645ES	TATACACCGTGGAATACTATGCAG
chr13	71866711	71866927	72968710	72968926	+	1521	216	9	L1PA13	"COLO2T,COLO2N"	2285	126	L1ME4a	"LINE:dbRIP,Ewing,Iskow"			c13p71866819FS	ACTAGGCTTAATACTTGGGTGATG	c13p71866819ES	TTCAATTAGATAGGAGGAATACGC
chr13	72640000	72640392	73741999	73742391	+	11	392	3	noL1	"COLO2T,COLO2N"	23	66	"FLAM_C,U7,(A)n"				c13p72640196FS	AAAGAAACATGAATAAGGTTCTGC	c13p72640196ES	TTCAGTTTTGTATTCTGCATTTTG
chr13	74594948	74595412	75696947	75697411	+	3373	464	25	L1HS	"COLO2T,COLO2N"	893	399	"L1HS,ERV3-16A3_I-int"				c13p74595180FS	AGGATTTATGGAAGTCTACAGAGC	c13p74595180ES	AAGTGACACAGCTGTTACTGAGAG
chr13	74856267	74856731	75958266	75958730	+	29	464	2	L1PA4	"COLO2T,COLO2N"	2	65	AluSx1		TBC1D4		c13p74856499FS	TGTTTGTTTATTTCAGAGTTGTGG	c13p74856499ES	TGAACTATTCTTTCTCATCTGCTG
chr13	76017142	76017251	77119141	77119250	-	218	109	14	L1PA2	"COLO2T,COLO2N"	154	103	"L1PA2,FLAM_C,(T)n"				c13p76017196FS	GAGCCTAGATGTTAGGTTTAGCAG	c13p76017196ES	CAAATGTCCAACAATGATAGACTG
chr13	76084448	76085007	77186447	77187006	-	89735	559	36	L1HS	"COLO2T,COLO2N"	59691	560	"HAL1,L1HS,AluSx1"				c13p76084727FS	AAATAAGGGATTGATTGAAAATTG	c13p76084727ES	TAATGCTAGATGACACGTTAGTGG
chr13	76818732	76819057	77920731	77921056	+	24	325	6	noL1	COLO2T	0	0					c13p76818894FS	TTTGCAGAGCTCATAGTGAGTAAC	c13p76818894ES	TGTTTACAGAATGCAAGAGAAAAG
chr13	77196020	77196950	78298019	78298949	-	51	930	12	L1PA5	"COLO2T,COLO2N"	24	75	"HAL1,L2a,L1PA5"		SLAIN1		c13p77196485FS	CTATTCTTGATTTTGTTGCTGTTG	c13p77196485ES	ATCATGCACATGTACCCTAAAAC
chr13	77551689	77552055	78653688	78654054	-	36	366	6	L1PA4	"COLO2T,COLO2N"	6	319	"L1MA8,L1PA4"		"BX647243,AK095779"		c13p77551872FS	AGTATTTCTTTGATTTTGAGGCTG	c13p77551872ES	CACAGAGTGAAGAGACAACCTATG
chr13	78566178	78566301	79668177	79668300	+	10	123	3	L1PA4	"COLO2T,COLO2N"	49	114	L1PA4				c13p78566239FS	GCTAAGTCATTTTGCCTTCTTATC	c13p78566239ES	CAAATGTCCAACAATGATAGACTG
chr13	80362609	80363286	81464608	81465285	-	92	677	6	noL1	"COLO2T,COLO2N"	73	674	"L1MB1,L1M7"				c13p80362947FS	ATACATTTTGTTTTATTGTCTGCG	c13p80362947ES	GGCTGTACCATTTTTCATTTCTAC
chr13	83438455	83438900	84540454	84540899	+	5955	445	40	L1HS	"COLO2T,COLO2N"	4303	481	L1HS				c13p83438677FS	AAACATTTTTGGTTCATCATTTG	c13p83438677ES	TCATTCTCAGTAAACTATCGCAAG
chr13	83771088	83771263	84873087	84873262	-	112	175	13	L1PA2	"COLO2T,COLO2N"	125	95	"L1PA2,AluY"				c13p83771175FS	AGCTAATTGTTTTATCAGAAAGGC	c13p83771175ES	CTTATGTTTAGTTAGGCAGTTGGG
chr13	84769359	84769608	85871358	85871607	-	69697	249	17	noL1	"COLO2T,COLO2N"	37657	299		"LINE:Ewing,Stewart"			c13p84769483FS	TTCACAAGCTTTAAAACAAAGAAC	c13p84769483ES	GCAATTATACAATGATGGAAACAC
chr13	85400020	85400337	86502019	86502336	+	478287	317	81	L1HS	"COLO2T,COLO2N"	278134	495	"L1HS,(A)n"				c13p85400178FS	TAAAACATTTATATCTGTTGGGGG	c13p85400178ES	TAGACTGGATTAAGAAAATGTGGC
chr13	86340682	86341294	87542681	87543293	-	725162	612	37	L1HS	"COLO2T,COLO2N"	697223	387	"L1HS,AluSx1,MLT1A0"				c13p86340988FS	TTACTTCCTTCTCCATTCTTCAAC	c13p86340988ES	TAATGCTAGATGACACGTTAGTGG
chr13	86631234	86631550	87833233	87833549	-	85	316	6	L1HS	"COLO2T,COLO2N"	169	321	"L1HS,L1ME2"				c13p86631392FS	TGTAACTCATTTCATTTGCATTTC	c13p86631392ES	TCATTCTCAGTAAACTATCGCAAG
chr13	86890475	86891153	88092474	88093152	+	39	678	4	L1PA4	"COLO2T,COLO2N"	21	87	"L1M4c,L1PA4"				c13p86890814FS	ATCCATTTGTTTTATGTTTGATGC	c13p86890814ES	CCCAAAGGATTATAAAATATGCTG
chr13	86937833	86938416	88139832	88140415	+	14	583	3	noL1	"COLO2T,COLO2N"	13	581	"(TA)n,(TG)n,(A)n"		AF339814		c13p86938124FS	AGCAAATCATATCTTGAACATTCC	c13p86938124ES	CATGTGATATCTGTTTTTACCAGG
chr13	87648832	87649262	88850831	88851261	-	123656	430	70	L1HS	"COLO2T,COLO2N"	114626	1064	"L1HS,L1MEc"	LINE:dbRIP			c13p87649047FS	TTAAATTACTTGGGATTCATTTGC	c13p87649047ES	GATGAGTTCATATCCTTTGTAGGG
chr13	89125957	89126359	90327956	90328358	-	23	402	6	L1HS	"COLO2T,COLO2N"	28	68	"L1HS,MER70A"				c13p89126158FS	CAGGTTAACTATGACTACTTGCCC	c13p89126158ES	AATTATAATGTGCAACAAATAGCG
chr13	90424185	90424719	91626184	91626718	+	2068	534	11	noL1	"COLO2T,COLO2N"	2232	533		"LINE:dbRIP,Ewing,Iskow,Stewart"			c13p90424452FS	AACATCATGCTTGTCAAAGAGTAG	c13p90424452ES	AAAACTGATCTGGTTAGAGCAAAG
chr13	91653915	91654237	92855914	92856236	+	80620	322	41	L1HS	"COLO2T,COLO2N"	35624	302	"AT_rich,L1MEg"		GPC5		c13p91654076FS	TATTCCTGAATTTCCTTGTCTCTC	c13p91654076ES	AAAAACCAAACACCACATATTCTC
chr13	91895424	91895589	93097423	93097588	-	22412	165	44	L1PA3	"COLO2T,COLO2N"	7406	217	"L1PA3,CT-rich"		GPC5		c13p91895506FS	GAGAAAGAAAGAAACCATTGAAAG	c13p91895506ES	AAAAACCAAACACCACATATTCTC
chr13	92021791	92021954	93223790	93223953	-	52	163	3	noL1	COLO2T	0	0	X5B_LINE		GPC5		c13p92021872FS	TATAGAGAGACAGCAACTCTGTGC	c13p92021872ES	TTATAGCCTAAGATTTCACATGGC
chr13	92135387	92135862	93337386	93337861	-	53167	475	39	L1HS	"COLO2T,COLO2N"	25724	709	"L1HS,AluSx1"		GPC5		c13p92135624FS	CATTGTTTTACCAGCACTCAGTAG	c13p92135624ES	TCATTCTCAGTAAACTATCGCAAG
chr13	96188652	96188779	97390651	97390778	+	17	127	4	noL1	COLO2T	0	0	"L1MC,MER104"		HS6ST3		c13p96188715FS	ACTAATTCTTTTGAGGTGTTTTGC	c13p96188715ES	TTTTGGCCCTGTAAGGTAATATAG
chr13	97117172	97117708	98319171	98319707	-	142848	536	78	L1HS	"COLO2T,COLO2N"	90346	462	"L1HS,AT_rich,MER63D"				c13p97117440FS	TGGTGTAGATACTACATGACAGCC	c13p97117440ES	ACACCGCATATTCTCACTCATAG
chr13	102997883	102998154	104199882	104200153	-	30	271	5	L1PA4	"COLO2T,COLO2N"	38	271	"L1PA3,AT_rich,L1PA4"				c13p102998018FS	CCTTGATTTTAGTTCTGCAAGG	c13p102998018ES	AATTGCACTAAAGGCAGAAATAAG
chr13	103094046	103094186	104296045	104296185	-	116	140	6	noL1	"COLO2T,COLO2N"	77	140	L1MA4A	"LINE:dbRIP,Ewing,Iskow"			c13p103094116FS	ACGTGAGAACATGTGTTATTTGTC	c13p103094116ES	ACAAATGGGTTAAAGACTTAGACG
chr13	103502125	103502653	104704124	104704652	+	19588	528	16	L1HS	"COLO2T,COLO2N"	13974	356	"L1HS,MER33"				c13p103502389FS	TATACAGGAGAGCAACACATTAGC	c13p103502389ES	TCATTCTCAGTAAACTATCGCAAG
chr13	104751662	104752106	105953661	105954105	+	38	444	8	L1PA2	"COLO2T,COLO2N"	57	319	"L1PA2,MIRc"				c13p104751884FS	GGTAAGTCTTGATGAAGTACCTGG	c13p104751884ES	ACACTGCATATTCTCACTCATAGG
chr13	104838769	104838900	106040768	106040899	+	67	131	3	L1PA3	"COLO2T,COLO2N"	137	298	AT_rich				c13p104838834FS	GGCCTTAGTTCAAAAGCACTATAC	c13p104838834ES	TGGAAATCATCATTCTCAGTAAAC
chr13	106234091	106234227	107436090	107436226	-	34	136	3	noL1	"COLO2T,COLO2N"	53	136	L1PA3				c13p106234159FS	TCTTTGTGGTTTTATCTACTTTTGG	c13p106234159ES	CTAGTCAAAGAAAGGGGTGACAG
chr13	106655121	106655408	107857120	107857407	-	20	287	2	L1PA2	"COLO2T,COLO2N"	34	66	L1PA2		FAM155A		c13p106655264FS	CCTAATTCCTCCTCTATTCCCTAC	c13p106655264ES	TTTTTAAATGTTTGGCATCTCAC
chr13	107029695	107030001	108231694	108232000	-	25	306	3	L1PA2	"COLO2T,COLO2N"	5	65	AluSx		FAM155A		c13p107029848FS	ACTTTGCCTGAATTACTACAAACC	c13p107029848ES	GAACTAGTTTACAGTCCCACCAAC
chr13	107960707	107960879	109162706	109162878	-	130	172	9	L1HS	"COLO2T,COLO2N"	114	172	"L1HS,AT_rich,AluY"				c13p107960793FS	CAGAAGTTGAGTACGTTGAGTGAG	c13p107960793ES	CAAATGTCCAACAATGATAGACTG
chr14	18129834	18130350	19059834	19060350	-	621711	516	56	L1HS	"COLO2T,COLO2N"	1189703	960	"L1HS,AluSp"				c14p18130092FS	AATTGACCTTTCTAAACATTCTGC	c14p18130092ES	AAATCATCATTCTCAGCAAACTATC
chr14	19257906	19258079	20188066	20188239	-	1905	173	11	L1HS	"COLO2T,COLO2N"	34	175	"L1MA9,L1HS"				c14p19257992FS	TTACCATTCCACTACTCCTCTCTC	c14p19257992ES	GATGAGTTCATATCCTTTGTAGGG
chr14	19274851	19275120	20205011	20205280	-	86	269	7	L1HS	"COLO2T,COLO2N"	59	256	"L1M2,T-rich,L1HS"				c14p19274985FS	ACAGTGTATAAACGTTCCCTTTTC	c14p19274985ES	TAGTTCTAGATCCCTGAGGAATTG
chr14	19624102	19624376	20554262	20554536	-	61734	274	24	L1HS	"COLO2T,COLO2N"	73284	320	L1HS	LINE:dbRIP			c14p19624239FS	TATGTTGATTAGCTTGATTTAGCC	c14p19624239ES	GCCCTTTCTTTAGTTATGATTTTG
chr14	21000154	21000872	21930314	21931032	+	24	718	3	noL1	"COLO2T,COLO2N"	27	69	"AT_rich,AluSz"		RAB2B	"RAB2B.2,RAB2B.1"	c14p21000513FS	TCAGTACCAGAATACCCCATAATC	c14p21000513ES	AAAACTGAGGTTGACAAGAAAATC
chr14	21467266	21467409	22397426	22397569	-	26	143	3	L1PA2	"COLO2T,COLO2N"	4	255			"TCRA,TRAJ17,AV2S1A1,TRA@,TCRAV8.1a"		c14p21467337FS	CAACATACAGTCTAAACAGGCAAG	c14p21467337ES	AAAGTTTGTCACTCTGTAGGTGC
chr14	22153501	22154077	23083661	23084237	-	25	576	4	noL1	"COLO2T,COLO2N"	28	67	AluSx1				c14p22153789FS	TAACTTCCTCCTCGGTATAGACAC	c14p22153789ES	TTTTTATTAGTGATGGGGTTTCAC
chr14	22864349	22865109	23794509	23795269	+	11	760	3	noL1	"COLO2T,COLO2N"	11	762	"T-rich,AT_rich,A-rich"		PABPN1	PABPN1.L	c14p22864729FS	AAAGGCCAAACAATTTTTATTTTC	c14p22864729ES	GATCACGTTAACACCTAACTCTCC
chr14	23001173	23001435	23931333	23931595	-	41	262	2	L1PA3	"COLO2T,COLO2N"	217	262	"L1MB8,L1PA3,AluSz"				c14p23001304FS	AATGGAATAGAATTGAGAGTCCAG	c14p23001304ES	CAAATGTCCAACAATGATAGACTG
chr14	23198845	23198998	24129005	24129158	+	23	153	2	L1PA3	"COLO2T,COLO2N"	1	65	L1PA3				c14p23198921FS	TAACATTCTAGCCATAGAGGATGC	c14p23198921ES	ATTAGCAAGGGACTAGGTGTTTC
chr14	23652376	23653204	24582536	24583364	+	67760	828	54	L1HS	"COLO2T,COLO2N"	63732	765	"MER45A,L1HS"		NRL		c14p23652790FS	CTTTGCAGACGTTCCCTAATAC	c14p23652790ES	ATCAATCAATAAATAAAGATCCCG
chr14	26034227	26034452	26964387	26964612	-	38	225	4	L1PA3	"COLO2T,COLO2N"	155	295	L2a		NOVA1		c14p26034339FS	TTACCTGTTTAAAAACTTAACGGC	c14p26034339ES	AACAATGAGAATACATGGACACAG
chr14	26212169	26212421	27142329	27142581	-	15	252	2	L1PA2	"COLO2T,COLO2N"	12	100	"HAL1,L1PA2"				c14p26212295FS	TTTCTGTTTCCTATTCTTTCAAGC	c14p26212295ES	TCATTCTCAGTAAACTATCGCAAG
chr14	26780114	26780243	27710274	27710403	+	12	129	3	L1PA4	"COLO2T,COLO2N"	22	129	"MSTD,L1PA4"				c14p26780178FS	TAGAAACAATTATCACCTTCTCCC	c14p26780178ES	CGTATGTTTATTGCGACACTATTC
chr14	27871482	27871641	28801731	28801890	+	663	159	6	L1PA3	"COLO2T,COLO2N"	965	141	L1PA3				c14p27871561FS	AAAGGACAGATTCAATTTTCAAAG	c14p27871561ES	CGTATGTTTATTGTGGCACTATTC
chr14	27940925	27941240	28871174	28871489	-	2212	315	29	L1HS	"COLO2T,COLO2N"	1358	315	"L1HS,AT_rich,MER20"				c14p27941082FS	CAAAGTTTTAGCACAACATTTCAG	c14p27941082ES	ATGATGAGTTCATGTCCTTTGTAG
chr14	28278415	28278650	29208664	29208899	+	13	235	3	noL1	"COLO2T,COLO2N"	34	65	AluY				c14p28278532FS	TTTGTTTTTAACTCCCTTCAGTTC	c14p28278532ES	AAAGGCTTAACATTTGAAGTATGC
chr14	28797593	28797921	29727842	29728170	-	130931	328	68	L1HS	"COLO2T,COLO2N"	164423	319	"L1MC3,L1HS,(TTTTTA)n"	LINE:dbRIP			c14p28797757FS	CATGTCTTTCTCACATTTCAAAAC	c14p28797757ES	GAACTAGTTTACAGTCCCACCAAC
chr14	30019007	30019109	30949256	30949358	+	21	102	4	L1PA3	"COLO2T,COLO2N"	23	67	L1PA3				c14p30019058FS	AATGGATTTAATCTTACATTTGGC	c14p30019058ES	TCATTCTCAGTAAACTATCGCAAG
chr14	30223402	30223819	31153651	31154068	-	13922	417	24	L1HS	"COLO2T,COLO2N"	7880	470	"L1HS,(T)n"		"SCFD1,KIAA0917"		c14p30223610FS	AGAGACAAGTCTATGTTACCCAGG	c14p30223610ES	GATGAGTTCATATCCTTTGTAGGG
chr14	31141351	31141481	32071600	32071730	+	358	130	5	L1PA3	"COLO2T,COLO2N"	368	75	"L1PA3,AT_rich,U3"		NUBPL		c14p31141416FS	TAGGGAAAGAAAATAATGTTTTGG	c14p31141416ES	TGATGAGTTCATGTTCTTTGTAGG
chr14	31679018	31679131	32609267	32609380	-	2136	113	23	L1PA2	"COLO2T,COLO2N"	1293	282	"L1PA2,L1MB5"		ARHGAP5		c14p31679074FS	ATCTTTTCAGAGAACCAACTTTTG	c14p31679074ES	AGTGGTATGATCTCTGCTCACTG
chr14	32119273	32119517	33049522	33049766	-	21088	244	35	L1PA3	"COLO2T,COLO2N"	17067	270	"L1P1,L1MA10,L1PA3"		AKAP6		c14p32119395FS	CATTAAATCAACAGATATGCAAGC	c14p32119395ES	TCATTCTCAGTAAACTATCGCAAG
chr14	32392407	32393070	33322656	33323319	-	19	663	2	noL1	"COLO2T,COLO2N"	29	663	L1PA4				c14p32392738FS	CAAAGACATTTTCTGCATCTATTG	c14p32392738ES	AGCTAGCAGAAAGCAAGAAATAAC
chr14	33725636	33725888	34655885	34656137	+	43	252	7	L1PA3	"COLO2T,COLO2N"	34	236	AT_rich				c14p33725762FS	GACATTTTCTCAGGTATTAGGGTG	c14p33725762ES	AACAGTGCATGTTCTCACTCATAG
chr14	34273861	34274148	35204110	35204397	+	10	287	3	noL1	"COLO2T,COLO2N"	6	287	(CA)n				c14p34274004FS	GACAAAAAGGAAATATGGAAAATG	c14p34274004ES	AATTTCTGCTGATAAAAACTCCAC
chr14	34600412	34601034	35530661	35531283	+	250	622	18	L1PA3	"COLO2T,COLO2N"	1043	563	"L1M4b,L1PA3,T-rich"		FAM177A1		c14p34600723FS	TAACTGAACTAAGACCACTCCCTC	c14p34600723ES	ATTAGGAGTTGTCTGCTTTGTTTC
chr14	35744547	35744936	36674796	36675185	+	6902	389	23	noL1	"COLO2T,COLO2N"	17159	344	L2b	"LINE:dbRIP,Ewing,Iskow,Stewart"			c14p35744741FS	TACCTACTATCCTTTCCAGCAAAC	c14p35744741ES	TATAGACAAGACTTTGGCTGATTG
chr14	36838946	36839352	37769195	37769601	-	751	406	11	noL1	"COLO2T,COLO2N"	823	400	L1MC3		MIPOL1		c14p36839149FS	TTTAGTTTGTATGTCTCCCTAGCC	c14p36839149ES	TTCTAAAAATTAGCCAGGCATTAG
chr14	36892877	36892979	37823126	37823228	-	70	102	3	noL1	"COLO2T,COLO2N"	218	75	L1PA2		MIPOL1		c14p36892928FS	AGTTCCTCATTGTACCTCTGGTAG	c14p36892928ES	TCTCCTCAGCAAATGTAAAAGAAC
chr14	37097211	37097772	38027460	38028021	-	91	561	4	L1PA3	"COLO2T,COLO2N"	128	561	"L1MEd,L1PA3"				c14p37097491FS	GCATTTGATCATTTTTAGAGTTCC	c14p37097491ES	CAGTTTTCATCTTGAAAGTGTTTG
chr14	37401761	37401959	38332010	38332208	-	14	198	2	L1PA2	COLO2T	0	0	L1PA2		C14orf25		c14p37401860FS	TGAACTTTTACTCTCTGAGCACAC	c14p37401860ES	CAAATGTCCAACAATGATAGACTG
chr14	37488960	37489243	38419209	38419492	-	13	283	3	L1PA3	"COLO2T,COLO2N"	6	317	L1MC3		C14orf25		c14p37489101FS	TGTTTCCTTTGTATAGCTTCTTCC	c14p37489101ES	AAAAACCAAACACCACATATTCTC
chr14	37597935	37598165	38528184	38528414	+	38	230	2	L1PA3	"COLO2T,COLO2N"	29	234	"L1PA3,LTR8"				c14p37598050FS	GGAAAATGTATTTCTGTAACTGCC	c14p37598050ES	TCATTCTCAGTAAACTATCGCAAG
chr14	38834508	38835650	39764757	39765899	-	32405	1142	56	L1HS	"COLO2T,COLO2N"	31316	498	"HAL1,L1HS,(T)n,AluSc"		CTAGE5		c14p38835079FS	GCCCAGCTAATTTTTGTATTTTTAG	c14p38835079ES	ACGAGGTCAAGAGATGTGTAATG
chr14	38944903	38945061	39875152	39875310	+	42	158	3	noL1	"COLO2T,COLO2N"	477	399		"LINE:Ewing,Iskow"	FBXO33		c14p38944982FS	TATAGTTGTTTACAGAGGGAAGGC	c14p38944982ES	GAACCTGAGGTGCTTTTAAGATAG
chr14	39167976	39168216	40098225	40098465	-	66	240	5	L1HS	"COLO2T,COLO2N"	95	187	"L1HS,AT_rich"	LINE:dbRIP			c14p39168096FS	ATAGGAAAATTTTTATGCAACACC	c14p39168096ES	CAAATGTCCAACAATGATAGACTG
chr14	39772319	39772426	40702569	40702676	-	58	107	3	noL1	"COLO2T,COLO2N"	23	114	"L1M1,(TTA)n"				c14p39772372FS	TTCAAACTTGGTAGGTTGTATGTG	c14p39772372ES	CCCCTCAACACATAAATTATTCTC
chr14	39871132	39871367	40801382	40801617	+	25	235	3	L1PA2	"COLO2T,COLO2N"	3	65	"L1MC1,L1PA2"				c14p39871249FS	TTAATTTTTGTGAAGGGTCTAAGG	c14p39871249ES	TCATTCTCAGTAAAGTATCGCAAG
chr14	40267129	40267713	41197379	41197963	-	44796	584	43	L1HS	"COLO2T,COLO2N"	55092	581	"L1MA2,L1HS"				c14p40267421FS	TGTATTTTAACTTTCTCTCCCTGC	c14p40267421ES	ACACCGCATATTCTCACTCATAG
chr14	41743625	41743855	42673875	42674105	-	644	230	14	L1PA4	"COLO2T,COLO2N"	1388	284	"T-rich,(TTTG)n,AluJb"				c14p41743740FS	CTAAATGCCAATAGTTTAAAACCC	c14p41743740ES	TCATTCTCAGCAAACTATCACAAG
chr14	42890304	42890515	43820554	43820765	+	22	211	5	noL1	"COLO2T,COLO2N"	20	68	"AluSq2,(A)n"				c14p42890409FS	ACTGCCTTAGAATCTGACCAATAC	c14p42890409ES	AAAACTCTGCAGGATAAAATTCAC
chr14	42966683	42967012	43896933	43897262	-	13	329	5	L1PA3	"COLO2T,COLO2N"	7	147	"L1PA3,AluSx1"				c14p42966847FS	GATAGAAACTTAACAAATGGCTGG	c14p42966847ES	ATACACCATGGAATATTATGCAGC
chr14	44215805	44215933	45146055	45146183	+	31	128	2	L1PA3	"COLO2T,COLO2N"	15	128	"L1PA3,AT_rich"				c14p44215869FS	CTCACAGTCTATGATCTTTTGGTG	c14p44215869ES	GGCACTATTCACAGTAGGAAAGAC
chr14	44243440	44244082	45173690	45174332	-	25607	642	49	L1HS	"COLO2T,COLO2N"	37549	580	"AluJr,L1HS,(T)n"	LINE:dbRIP			c14p44243761FS	TGCTTGAAGCTAGGAACTTAAGAC	c14p44243761ES	TAATGCTAGATGACACGTTAGTGG
chr14	45015805	45016137	45946055	45946387	-	31988	332	16	L1HS	"COLO2T,COLO2N"	43877	421	"L1HS,L1PA5"				c14p45015971FS	CAACACTATGTTGAATAGGAGTGG	c14p45015971ES	GATGAGTTCATATCCTTTGTAGGG
chr14	45135523	45135956	46065773	46066206	-	24	433	3	L1PA4	"COLO2T,COLO2N"	39	602	"L1PA4,MIRb"				c14p45135739FS	ATTTATTGAATGCCTATTAGGTGC	c14p45135739ES	AACTAGAAATACCATTTGACCCAG
chr14	45382879	45383395	46313129	46313645	-	4215	516	23	L1HS	"COLO2T,COLO2N"	673	516	"L1HS,(TTTTTA)n,L1M5"				c14p45383137FS	CATAAGCCTCTAATCTCTCTCAGC	c14p45383137ES	TCATTCTCAGTAAACTATCGCAAG
chr14	45529901	45530021	46460151	46460271	-	1649	120	7	L1PA2	"COLO2T,COLO2N"	2126	121	L1PA2				c14p45529961FS	TCAATCAAGCTAGGAAGAATAAGG	c14p45529961ES	CAAATGTCCAACAATGATAGACTG
chr14	46169031	46169340	47099281	47099590	-	22402	309	21	noL1	"COLO2T,COLO2N"	8828	236	"L2a,MLT1D"				c14p46169185FS	TTTACAGAAAAGTTTATCAACCCC	c14p46169185ES	GGTAGAAGAGTCACAACCAGAGAG
chr14	46265083	46265475	47195333	47195725	-	46998	392	25	L1HS	"COLO2T,COLO2N"	38704	338	L1HS	LINE:dbRIP			c14p46265279FS	CAAAGCATCAATAAAAATCAATTTAC	c14p46265279ES	CCATCTTTCTCAGTAAACTATCGC
chr14	47732007	47732546	48662257	48662796	+	3541	539	25	L1HS	"COLO2T,COLO2N"	3248	436	"L1HS,(A)n"				c14p47732276FS	CATACATCGCTTTCACTATTTCAG	c14p47732276ES	TCATTCTCAGTAAACTATCGCAAG
chr14	47878406	47878645	48808656	48808895	+	36	239	4	L1PA3	"COLO2T,COLO2N"	41	255	"L1PA3,L1PA13"				c14p47878525FS	TGACAAAACAGACTTTAAACCAAC	c14p47878525ES	TCATTCTCAGTAAACTATCGCAAG
chr14	49072565	49073083	50002815	50003333	+	69	518	9	L1PA3	"COLO2T,COLO2N"	122	519	"(A)n,L1PA3,L1PREC2,Charlie8,FLAM_C"	Alu:Hormozdiari			c14p49072824FS	GCAAGTAACATAATTGAGTGAAGG	c14p49072824ES	TAATGCTAGATGACGAGTTAATGG
chr14	50487299	50487581	51417549	51417831	+	851	282	7	L1PA3	"COLO2T,COLO2N"	1175	281	"L1PA3,(GAAAA)n"				c14p50487440FS	TTTTTAGTAGAGATGGGGTTTCAC	c14p50487440ES	GATGAGTTCATATCCTTTGTAGGG
chr14	50586294	50586495	51516544	51516745	+	63	201	7	noL1	"COLO2T,COLO2N"	37	201	"L2c,AluSg7"		TRIM9		c14p50586394FS	ACTCACTACCACGAGAACAGTATG	c14p50586394ES	GAATGACCTTCAGAAAGAGTTACC
chr14	50589599	50590110	51519849	51520360	-	94	511	15	L1HS	"COLO2T,COLO2N"	55	170	"AluJb,L1HS,T-rich"	LINE:dbRIP	TRIM9		c14p50589854FS	CTGTAGTCCTAGCTACTCCAGAGG	c14p50589854ES	ACTTTGGGCAATAATTTGTAATTC
chr14	51601622	51602009	52531872	52532259	-	5542	387	32	L1HS	"COLO2T,COLO2N"	10250	306	L1HS		NID2		c14p51601815FS	ACAAAAACAAAACACTCCTCTTTC	c14p51601815ES	TCATTCTCAGTAAACTATCGCAAG
chr14	52570200	52570563	53500450	53500813	+	94	363	4	L1PA3	"COLO2T,COLO2N"	283	289	"AluJr,L1PA3"				c14p52570381FS	AGATTTCCGTTTATCTGAGATTTG	c14p52570381ES	AAATTATTGAAAGGTGAAGCAAAG
chr14	55550266	55550399	56480513	56480646	-	15	133	3	L1PA3	COLO2T	0	0	MSTD				c14p55550332FS	ACATTCCATTTGCTTAGGTAGAAG	c14p55550332ES	TCATTCTCAGTAAACTATCGCAAG
chr14	57087848	57088263	58018095	58018510	-	1162	415	15	L1PA2	"COLO2T,COLO2N"	981	415	"(TTTTA)n,L1PA2,L1PA7"				c14p57088055FS	GTAAAAGCATTCCTATTTCTCCAC	c14p57088055ES	TGGAAATCATCATTCTCAGTAAAC
chr14	57574983	57575319	58505230	58505566	+	116	336	11	L1HS	"COLO2T,COLO2N"	21	76	"L1HS,Charlie4a"		C14orf37		c14p57575151FS	AGTTCTGAGAATGTTTTTGCCAG	c14p57575151ES	ATGATGAGTTCATGTCCTTTGTAG
chr14	58290145	58290366	59220392	59220613	+	8396	221	11	noL1	"COLO2T,COLO2N"	3406	475	AluJr	"LINE:dbRIP,Ewing,Iskow,Stewart"			c14p58290255FS	TCCATACAAAGCTTTAGTTTCTCC	c14p58290255ES	ATTTTCTTCCAAAGCAGTTGTTAC
chr14	60008640	60008927	60938887	60939174	-	23	287	2	L1PA4	"COLO2T,COLO2N"	24	319	"L4,L1PA4"		C14orf39		c14p60008783FS	ATAAAAGGCAAATCAAATGTCTTC	c14p60008783ES	AACACTGCATATTCTCACTCGTAG
chr14	60591081	60591636	61521328	61521883	-	507247	555	94	L1HS	"COLO2T,COLO2N"	815655	554	"L1HS,L1PA14"		SLC38A6		c14p60591358FS	TTCTGTGAAGAATGTCATTGGTAG	c14p60591358ES	TAATGCTAGATGACACGTTAGTGG
chr14	61370182	61370503	62300429	62300750	-	1293	321	6	noL1	"COLO2T,COLO2N"	3035	327	(T)n				c14p61370342FS	TTTGTATTTTTAGTAGAGACGGGG	c14p61370342ES	AGTCTAAGACCAACCTGGCTAAC
chr14	61820656	61820993	62750903	62751240	-	2502	337	16	L1PA3	"COLO2T,COLO2N"	1596	483	"L1PA3,(T)n,MLT1A0"				c14p61820824FS	TGTTTGTCATTCTCTCAAAATCTG	c14p61820824ES	TCATTCTCAGTAAACTATCGCAAG
chr14	62078283	62078725	63008530	63008972	+	9763	442	30	L1HS	"COLO2T,COLO2N"	9245	376	"L1HS,AT_rich"				c14p62078504FS	AGATGATATTGAAGTTCAGCCTTC	c14p62078504ES	TCATTCTCAGTAAACTATCGCAAG
chr14	62652843	62653234	63583090	63583481	-	29	391	7	L1HS	"COLO2T,COLO2N"	299	391	"L1HS,L1M6"				c14p62653038FS	ATTTCATCCTGAGATACACAATCC	c14p62653038ES	GATGAGTTCATATCCTTTGTAGGG
chr14	63481300	63482131	64411547	64412378	-	11	831	6	noL1	"COLO2T,COLO2N"	23	345	"L1ME3,AluSx,AluSq,(T)n"		SYNE2		c14p63481715FS	TTTTGAAACTTCTGTATTGCTGAG	c14p63481715ES	AGAATCACTTGAACCCAGGAG
chr14	64967769	64968194	65898016	65898441	-	16	425	3	noL1	"COLO2T,COLO2N"	31	68	"AluJb,AluSp"		FUT8		c14p64967981FS	TAGAGACAAGGTTTCTCCATGTTG	c14p64967981ES	GGTAACCAAATTGAAACAACAGAC
chr14	65231455	65231589	66161702	66161836	+	21	134	2	L1PA3	"COLO2T,COLO2N"	1	65	"L1MC2,L1PA3"		FUT8		c14p65231522FS	TTTCAGAGCAAGAAAAATTATCAG	c14p65231522ES	CAGATGTCCAACAATGATAGACTG
chr14	65311545	65311935	66241792	66242182	+	223	390	6	L1PA3	"COLO2T,COLO2N"	204	392	"MER110A,L1PA3,MLT2D"				c14p65311740FS	TTACAGAGTCTGATAGCATCTTGC	c14p65311740ES	TCATCATTCTCAGTAAACTATCGC
chr14	66299584	66299691	67229831	67229938	-	188	107	3	L1HS	"COLO2T,COLO2N"	145	187	MER2		GPHN		c14p66299637FS	AGACTCTTCTCAAAAGTATGGTGG	c14p66299637ES	ATGATGAGTTCATGTCCTTTGTAG
chr14	66489295	66489668	67419542	67419915	-	3014	373	23	noL1	"COLO2T,COLO2N"	815	342	"L1MB5,AluSx3"	"LINE:Ewing,Iskow"	GPHN		c14p66489481FS	TTAACTTTTAAGGAAGTGCCAAAC	c14p66489481ES	TATGACACCAAAAGTACAAGCAAC
chr14	66632363	66632622	67562610	67562869	+	108	259	5	L1PA3	"COLO2T,COLO2N"	17	442	"MER5A1,L1PA3,(A)n"		GPHN		c14p66632492FS	AATAAAGAAATGAAGTTGGCATTC	c14p66632492ES	TCATTCTCAGTAAACTATCGCAAG
chr14	70089740	70090276	71019987	71020523	+	114596	536	46	L1HS	"COLO2T,COLO2N"	164369	540	"L1HS,L1M1"				c14p70090008FS	TAATCATTTGACTTCTTCCTTTCC	c14p70090008ES	TGGGAGATATACCTAATGCTAGATG
chr14	70267602	70267813	71197849	71198060	+	390	211	9	noL1	"COLO2T,COLO2N"	309	309	AluJb	"LINE:Ewing,Iskow"	MAP3K9		c14p70267707FS	CTTTGGACTTCTGATACCTAGCTC	c14p70267707ES	GGTCAAAAAGACAAAAGGAGAAG
chr14	70495359	70495750	71425606	71425997	-	67	391	3	L1PA3	"COLO2T,COLO2N"	61	393	"L1PA3,MLT1K,(T)n"		PCNX		c14p70495554FS	GATATAGAGAAATTTCCTCCCACC	c14p70495554ES	TCATTCTCAGTAAACTATCGCAAG
chr14	70904381	70904678	71834628	71834925	-	35	297	11	L1PA2	"COLO2T,COLO2N"	48	297	"T-rich,L1PA2,AT_rich"				c14p70904529FS	ACTACCACGTCTGACTAGTTTTTG	c14p70904529ES	TAGACTGGATTAAGAAAATGTGGC
chr14	71341805	71342098	72272052	72272345	+	19645	293	8	noL1	COLO2T	0	0	"AluSx,MSTC"				c14p71341951FS	GTACCTGTAATCCCAGCTACTTG	c14p71341951ES	ACTGTGGTTCAGTTTGTATGTTTG
chr14	75696202	75696831	76626449	76627078	+	17	629	3	noL1	"COLO2T,COLO2N"	20	65	"MLT1H2,AT_rich,L1M6,AluY"		"KIAA1152,C14orf118"		c14p75696516FS	ATTTTTAAAGAACATGGATTCTGG	c14p75696516ES	GAAACCCCGACTCTACTAAAAATAC
chr14	76288403	76288776	77218650	77219023	+	62	373	3	L1PA4	"COLO2T,COLO2N"	123	477	MER5A				c14p76288589FS	ATAATGCTCTATTACTGCAGGAGG	c14p76288589ES	AATTGAACAATGAGAACACTTGG
chr14	77760191	77760330	78690438	78690577	-	28	139	4	L1PA3	"COLO2T,COLO2N"	26	148	L1M4b		KIAA0743		c14p77760260FS	GATTTGAAGCATCCAAGATAACTC	c14p77760260ES	AACACCTCATGTTCTCACTCATAG
chr14	78844690	78845066	79774937	79775313	-	831	376	15	L1HS	"COLO2T,COLO2N"	1633	380	"(TTTTA)n,L1HS,(TTTA)n"		"KIAA0743,NRXN3"		c14p78844878FS	TCATTTCTCCATTCTTAACCTCTC	c14p78844878ES	TCATTCTCAGTAAACTATCGCAAG
chr14	78921103	78921217	79851350	79851464	-	90	114	2	L1PA2	"COLO2T,COLO2N"	35	92	L1PA2		"KIAA0743,NRXN3"		c14p78921160FS	TCAATCTGATCATGGACAAACTAC	c14p78921160ES	ATTTAGTGGGACAAATATGCAAAC
chr14	79309867	79310134	80240114	80240381	+	47	267	7	L1PA3	"COLO2T,COLO2N"	11	69	"(TAAAAA)n,L1PA3,L2b"		"KIAA0743,NRXN3"		c14p79310000FS	TCTTTCTATTTCAGTTTTCAAGGG	c14p79310000ES	TCATTCTCAGTAAACTATCGCAAG
chr14	79720569	79720707	80650816	80650954	+	21	138	4	L1PA2	COLO2T	0	0	MLT1J				c14p79720638FS	AATAGCATTTGGCATTTCTCTTAC	c14p79720638ES	ATGAGGAAAATCCAGAATAGAGTG
chr14	80538721	80538958	81468968	81469205	-	4716	237	44	L1HS	"COLO2T,COLO2N"	6805	277	"L1HS,(T)n"	LINE:dbRIP	TSHR		c14p80538839FS	TTCCTGTTTTCCTACATCTTTCTC	c14p80538839ES	CACAAAAGAAACTAAACAGCAGTC
chr14	80611304	80611648	81541551	81541895	-	31	344	3	L1PA2	"COLO2T,COLO2N"	3	65	"L1PA2,MER57B2"		TSHR		c14p80611476FS	AGTACCTGTCCAGTCTTACAGAGC	c14p80611476ES	GAACTAGTTTACAGTCCCACCAAC
chr14	82705284	82705674	83635531	83635921	-	2148	390	24	L1HS	"COLO2T,COLO2N"	5123	273	"L1HS,MIR,AT_rich"	LINE:dbRIP			c14p82705479FS	GAACTGGAACTGAAATTGGAATAC	c14p82705479ES	ATGATGAGTTCATGTCCTTTGTAG
chr14	83677379	83677486	84607626	84607733	-	20	107	4	L1PA4	"COLO2T,COLO2N"	10	686	"CT-rich,AluSq2"				c14p83677432FS	CAGTTATGGATGGACAACAATTAG	c14p83677432ES	TGCAATAGTTTGCTGAGAATAATG
chr14	85377260	85377581	86307507	86307828	+	100	321	12	noL1	"COLO2T,COLO2N"	146	321	"L2,AluY"	"LINE:Ewing,Iskow"			c14p85377420FS	AGCAAGAAACTGAAAATAGCTTTG	c14p85377420ES	ACATCAGAAAATTATGGGATTCAG
chr14	85427651	85427906	86357898	86358153	+	82	255	7	L1PA2	"COLO2T,COLO2N"	77	178	"L1PA2,MSTC"				c14p85427778FS	AACGAAATGTCTGTAGTCAAAATG	c14p85427778ES	CAAATGTCCAACAATGATAGACTG
chr14	85451088	85451580	86381335	86381827	-	602	492	13	noL1	"COLO2T,COLO2N"	22	459	L1MC1	"LINE:Ewing,Iskow"			c14p85451334FS	CAAATGCATAGTGACTTTATCTGC	c14p85451334ES	AACAAAAGAAGAAAACAAACAACC
chr14	88516559	88517023	89446806	89447270	-	12471	464	24	L1HS	"COLO2T,COLO2N"	7045	467	"MLT1N2,L1HS"	LINE:Iskow			c14p88516791FS	AAATATTGCATGGGATACATTAGC	c14p88516791ES	CTACATGGATATACCACATTTTGC
chr14	89238708	89238819	90168955	90169066	-	1972	111	5	noL1	"COLO2T,COLO2N"	4854	76	(T)n				c14p89238763FS	ATTTTAACAGGAATAAAATGTGGC	c14p89238763ES	TAAATTAAGTGCCTAGACTCACCC
chr14	89566947	89567251	90497194	90497498	-	1756	304	14	L1PA3	"COLO2T,COLO2N"	1350	304	"L1PA3,AluSz"	LINE:Ewing	TDP1		c14p89567099FS	CTGTAACCCATACCTTTCTGTAGG	c14p89567099ES	TTTTAGTAGAGACAGGGATTCACC
chr14	94675029	94675450	95605276	95605697	+	6025	421	24	L1HS	"COLO2T,COLO2N"	3831	426	"L1HS,(A)n"		"KIAA0928,DICER1"		c14p94675239FS	AATTTAAGAGGTGCAAAGAATGAG	c14p94675239ES	AACCTTACGTTCAGATTATTCACC
chr14	96300262	96300616	97230509	97230863	-	32	354	3	L1PA4	"COLO2T,COLO2N"	27	154	"MLT1E1A,MER1A"				c14p96300439FS	AGTGGACGTTTCTCTTTTCTTTG	c14p96300439ES	AATGCTAAATGACAAGTTAATGGG
chr14	96571797	96571962	97502044	97502209	+	324	165	3	noL1	COLO2T	0	0					c14p96571879FS	TAGTAGTCTGCTGTGGAGACTCAG	c14p96571879ES	ACCTTACATCCACTATTTTGTTGG
chr14	96929885	96930209	97860132	97860456	-	10	324	2	L1PA2	"COLO2T,COLO2N"	7	65	L1PA2				c14p96930047FS	GGTGTATTATATTGGTTTCCCTTG	c14p96930047ES	ATGATGAGTTCATGTCCTTTGTAG
chr14	102190871	102191275	103121118	103121522	-	30	404	4	noL1	"COLO2T,COLO2N"	84	394	"AluJr,(T)n"		RCOR1		c14p102191073FS	TAATTTAGAATTAATGAGGCCAGG	c14p102191073ES	TTAAGGTATTGAGAGGAAGGAATG
chr14	103803917	103804772	104734164	104735019	-	7998	855	26	L1HS	"COLO2T,COLO2N"	1739	855	"L1MC3,L1HS"				c14p103804344FS	TTTCCTAGAAACCTGGTAAAAATG	c14p103804344ES	TAATGCTAGATGACACGTTAGTGG
chr14	105926708	105926961	106855663	106855916	-	17	253	6	L1PA2	"COLO2T,COLO2N"	47	74	L1PA2		abParts		c14p105926834FS	ATTCGTTTAATAATGCTACTTCCG	c14p105926834ES	AAAAGACATTTTCATTGTAGGGAC
chr15	18281857	18282279	20021844	20022265	-	2311	422	23	L1HS	"COLO2T,COLO2N"	1319	373	"(TTTA)n,L1HS,ALR/Alpha"				c15p18282068FS	AAGACACCTGAATCAAAAGAAAAG	c15p18282068ES	TCATTCTCAGTAAACTATCGCAAG
chr15	18295703	18295904	20035689	20035890	+	17	201	3	L1PA3	"COLO2T,COLO2N"	3	98	"L1PA3,ALR/Alpha,A-rich"				c15p18295803FS	AGTTTGGAAACACTCCTTTTGTAG	c15p18295803ES	TTTGACTTCCTCTTTTCCTAATTG
chr15	18306967	18307407	20046953	20047393	-	38	440	3	noL1	"COLO2T,COLO2N"	6	438	AluSp				c15p18307187FS	AATCTCATTCCAACAATTACCATC	c15p18307187ES	TATACGCATATGAATACAACTCGC
chr15	18337686	18337879	20077672	20077865	+	10	193	2	noL1	"COLO2T,COLO2N"	3	65	AluSc	"LINE:Ewing,Iskow"			c15p18337782FS	CCTAGGTGACCTCTAGAAAAACAG	c15p18337782ES	ACTCCTTCTACTGGATGTTGAGTC
chr15	19120537	19120643	20860523	20860629	-	19	106	2	L1PA3	"COLO2T,COLO2N"	37	255	L1M7				c15p19120590FS	GTTTAGTGGTTCTTTCTCAGAAGC	c15p19120590ES	GATAGACTGGATTAAGAAAATGCG
chr15	19301177	19301596	0	0	-	909	419	8	L1PA13	"COLO2T,COLO2N"	373	419	"L1PA13,AluY"				c15p19301386FS	CAAAATCAACCTTAGATCTCAACC	c15p19301386ES	ACACAGACAAGTGATGCTAAAAAC
chr15	19378396	19378531	21113771	21113906	+	12	135	2	L1PA3	"COLO2T,COLO2N"	1	65	L1M1				c15p19378463FS	GCATTAAGTCTGTAGATTGCATTG	c15p19378463ES	TCATTCTCAGTAAACTATCGCAAG
chr15	21934956	21935283	24383863	24384190	+	12693	327	20	L1HS	"COLO2T,COLO2N"	14423	301	"L1MC,L1HS,L1MC1"	LINE:dbRIP			c15p21935119FS	AAAAGACAAAGTTTTCCATGACTC	c15p21935119ES	GATGAGTTCATATCCTTTGTAGGG
chr15	25015556	25015903	27432810	27433157	-	25	347	3	L1PA3	COLO2T	0	0	"L1PA3,L1PA16"		GABRG3		c15p25015729FS	ATCTAATTCTGTGAAGAAAATGGC	c15p25015729ES	AACTAGAAATACCATTTGACCCAG
chr15	25044078	25044703	27461332	27461957	-	10136	625	29	L1HS	"COLO2T,COLO2N"	4620	179	"L1HS,(TTTA)n"		GABRG3		c15p25044390FS	CACTTAATGAATGGAAGGAATTG	c15p25044390ES	TAATGCTAGATGACACGTTAGTGG
chr15	25341913	25342349	27668318	27668754	+	11	436	4	noL1	"COLO2T,COLO2N"	5	90	"MIR,AluJb,MER68,(A)n"		GABRG3		c15p25342131FS	ATAAGAAAATGGAAGCTAGGTGTG	c15p25342131ES	TCTCTTGCATGAGTTAAATGTCTC
chr15	26223097	26223506	28549502	28549911	-	41	409	6	L1PA2	"COLO2T,COLO2N"	31	409	"L1PA2,L1MA3,AluSx1"		HERC2		c15p26223301FS	TCCTGCAATTTTACTGAATTTATC	c15p26223301ES	TGAGTTCATGTCCTTTGTAGGG
chr15	31042944	31043231	33255652	33255939	+	733	287	5	L1PA3	"COLO2T,COLO2N"	488	276	"L2a,L1PA3,MER3,AT_rich"		FMN1		c15p31043087FS	TATATGTGTGTGTGTGTGTGTGTG	c15p31043087ES	TGGAAATCATCATTCTCAGTAAAC
chr15	31524471	31524659	33737179	33737367	+	11	188	2	L1PA5	"COLO2T,COLO2N"	3	65	L2b		RYR3		c15p31524565FS	CTACACCATGTCTCTGCTACATTC	c15p31524565ES	TATATTAGCAATGGTGTGAGGAAG
chr15	31600239	31600489	33812947	33813197	+	590	250	4	noL1	"COLO2T,COLO2N"	689	172			RYR3		c15p31600364FS	AGGAAAACACCAACTTAGATTCTG	c15p31600364ES	AGCTCTTAATATTGACCCTTTGTG
chr15	31658203	31658636	33870911	33871344	+	35	433	11	L1PA10	"COLO2T,COLO2N"	47	440	L1PA10		RYR3		c15p31658419FS	GCCTCTATCTCCATGTTAATTTTG	c15p31658419ES	CTCAGTTATAAGTGGGACCTGAAC
chr15	33360280	33360490	35572988	35573198	-	51	210	4	L1PA3	"COLO2T,COLO2N"	67	154	L1PA3				c15p33360385FS	TGAAAGTATCATGGAAGAGAAGTG	c15p33360385ES	TAAAAATAAGAGTTTGCTTGAGGG
chr15	34766012	34766361	36978720	36979069	+	59171	349	98	L1PA3	"COLO2T,COLO2N"	62932	348	"AluJb,L1PA3,G-rich"		C15orf41		c15p34766186FS	TATTCCCCTATTACCCTTTATTCC	c15p34766186ES	TCATTCTCAGTAAACTATCGCAAG
chr15	35494693	35495109	37707401	37707817	-	14734	416	14	noL1	"COLO2T,COLO2N"	5245	84	MER33	"LINE:Ewing,Stewart"			c15p35494901FS	AGTCTAAGAAATGAGGCAGAGATG	c15p35494901ES	CTTAATAGAAAGCTCTCAACCAGC
chr15	37727619	37727725	39940327	39940433	+	1777	106	3	L1PA2	"COLO2T,COLO2N"	254	441	L1PA2		FSIP1		c15p37727672FS	TACTTCTTCTGAGTTACTCCTGGG	c15p37727672ES	ACACACATGTACCATGAATAGGAG
chr15	41530480	41530723	43743188	43743431	-	11	243	2	L1PA3	COLO2T	0	0	"AluSz6,L1PA3"		TP53BP1		c15p41530601FS	ATACTTGAAGAGGTCTCCAAACTG	c15p41530601ES	CAAATGTCCAACAATGATAGACTG
chr15	42337520	42337859	44550228	44550567	+	67	339	6	L1PA2	"COLO2T,COLO2N"	111	357	"L1PA2,(CATGT)n"				c15p42337689FS	ATATCTGTTCTTTCTTGGCTTGTC	c15p42337689ES	TCATTCTCAGTAAACTATCGCAAG
chr15	42443651	42443922	44656359	44656630	+	22	271	2	L1PA3	"COLO2T,COLO2N"	2	65	"AluSz6,L1PA3"		CASC4		c15p42443786FS	AGGTGTCTGTTTAGGTTTTCAGTC	c15p42443786ES	TCATTCTCAGTAAACTATCGCAAG
chr15	43704652	43705077	45917360	45917785	+	15	425	2	L1PA6	"COLO2T,COLO2N"	22	426	"AluY,L1PA6"				c15p43704864FS	AGAATTGCTTTAATCCAGGAGAC	c15p43704864ES	GACTTGGAACCAACCTAAATGTC
chr15	43866513	43866901	46079221	46079609	-	12	388	2	noL1	"COLO2T,COLO2N"	15	388	"(T)n,AluY"				c15p43866707FS	TAATTACTCAGCCAAACAAGAAAG	c15p43866707ES	AACCATTAAGATGAGCTTTGTAGC
chr15	44338201	44338628	46550909	46551336	+	106	427	3	noL1	"COLO2T,COLO2N"	217	442	"L1PA13,AluSx"				c15p44338414FS	CTAACTCTTTTATGAGGCAAGCAG	c15p44338414ES	TTGATTTTGTATCCTGAGACATTG
chr15	45076992	45077497	47289700	47290205	-	118583	505	36	L1HS	"COLO2T,COLO2N"	116353	505	L1HS				c15p45077244FS	CTAGTGGATGATGAAAACATTGAC	c15p45077244ES	TCATTCTCAGTAAACTATCGCAAG
chr15	45198191	45198416	47410899	47411124	-	13	225	2	L1PA3	"COLO2T,COLO2N"	1	65	"L1M4c,L1PA3"				c15p45198303FS	GCTAGGAAGTACCAGAAATCTGTC	c15p45198303ES	CAAATGTCCAACAATGATAGACTG
chr15	45294440	45294618	47507148	47507326	-	373	178	5	noL1	"COLO2T,COLO2N"	187	69		"LINE:Ewing,Iskow,Stewart"	SEMA6D		c15p45294529FS	TTCCTTTACTTTACTTATGGGCAG	c15p45294529ES	AGTTTTAACAGATCCCTGTGTAGC
chr15	45972127	45972552	48184835	48185260	-	1954	425	12	noL1	"COLO2T,COLO2N"	885	85	"L1P3,AluY"	LINE:Ewing			c15p45972339FS	TCTTTTCTTCTTTATTAGCATGGC	c15p45972339ES	GTCATTGGTTCTGTTTATGTGATG
chr15	46658472	46658611	48871180	48871319	+	30	139	4	L1PA2	"COLO2T,COLO2N"	81	67	L1PA2		FBN1		c15p46658541FS	TTTCTAAAAGATGAAAATGTCAACC	c15p46658541ES	CAAATGTCCAACAATGATAGACTG
chr15	47338546	47339099	49551254	49551807	-	524	553	4	L1PA3	"COLO2T,COLO2N"	318	553	"L1P1,L1PA3"		GALK2		c15p47338822FS	GTATCTCATTGTGGTTTTGATTTG	c15p47338822ES	AATGCTAGATGACAAGTTAGTGGG
chr15	47625153	47625480	49837861	49838188	-	31	327	3	L1PA4	"COLO2T,COLO2N"	73	313	"L1PB1,L1PA4"		C15orf33		c15p47625316FS	TTAGTTCTGCTCTGATCTTTGTTG	c15p47625316ES	ATGATGAGTTCATGTCCTTTGTAG
chr15	48976634	48976833	51189342	51189541	+	277	199	6	noL1	"COLO2T,COLO2N"	68	208		LINE:Ewing			c15p48976733FS	AACATTTTACTGAAAATCTCTGCC	c15p48976733ES	ATGGTGAAACCCCATCTTTAC
chr15	49111075	49111393	51323783	51324101	-	346	318	12	L1PA3	"COLO2T,COLO2N"	823	318	"L1PA3,L1M1"				c15p49111234FS	GACTTTCATGTTTATTTAGGACCC	c15p49111234ES	TCAGGGATCTAGAACTGGAAATAC
chr15	49496347	49496724	51709055	51709432	-	257	377	12	L1HS	"COLO2T,COLO2N"	1340	411	"MER4-int,L1HS,(TTG)n"				c15p49496535FS	AGAAAAACAACAAAAGAACAATCC	c15p49496535ES	TCATTCTCAGTAAACTATCGCAAG
chr15	49662232	49662659	51874940	51875367	-	65141	427	79	L1HS	"COLO2T,COLO2N"	42336	427	"L1HS,AT_rich,L1MC4a"		DMXL2		c15p49662445FS	ATGAAAAATCTTACAACCAAGAGG	c15p49662445ES	TTCTCAGTAAACTATCGCAAGAAC
chr15	51204908	51205614	53417616	53418322	-	19	706	3	noL1	COLO2T	0	0	"MIRb,MIRc"				c15p51205261FS	CTTTAAATGTTGCCTGTACTGATG	c15p51205261ES	TAATAACTTGAACTTTCACTGCCC
chr15	51235041	51235392	53447749	53448100	-	241504	351	50	L1HS	"COLO2T,COLO2N"	233931	554	"LTR90A,L1HS"				c15p51235216FS	GTGGTCTCATAACACACTAACAGC	c15p51235216ES	GATGAGTTCATATCCTTTGTAGGG
chr15	51683957	51684634	53896665	53897342	+	16	677	3	noL1	"COLO2T,COLO2N"	11	676	L1PA13		WDR72		c15p51684295FS	CACGTGATCTTGTTCTCTTTTATG	c15p51684295ES	AACACAAAATTATAAAAACCCTGG
chr15	52025925	52026236	54238633	54238944	-	22	311	7	noL1	"COLO2T,COLO2N"	5	310	"AluSx4,L1PREC2,AluYc"				c15p52026080FS	TTCCTATATTCATATTTGGATGCC	c15p52026080ES	TTTATTAGAACCCGCTAGACTCTG
chr15	52766315	52766807	54979023	54979515	-	35	492	6	noL1	"COLO2T,COLO2N"	173	492	"L2c,(A)n,AluY"				c15p52766561FS	ATTCTACAGACCATTCTCCAGTTC	c15p52766561ES	TGCTGTTTGTCTTCATTAATCTTC
chr15	53005512	53005632	55218220	55218340	-	877	120	48	L1HS	"COLO2T,COLO2N"	1350	119	"L1HS,L1M1"	"Alu:Hormozdiari,LINE:dbRIP"			c15p53005572FS	TTCAGCTTGAACAAGTTCTGTTAG	c15p53005572ES	TACCCAAAGGACTATAAATCATGC
chr15	54067935	54068267	56280643	56280975	+	239	332	9	L1HS	"COLO2T,COLO2N"	191	357	"L1HS,L1MC4"		NEDD4		c15p54068101FS	TTTTGTATTTTTGGTAGAGATGGG	c15p54068101ES	TCATTCTCAGTAAACTATCGCAAG
chr15	54213849	54214164	56426557	56426872	-	279	315	15	L1PA2	"COLO2T,COLO2N"	421	104	L1PA2		RFX7		c15p54214006FS	TTTAACACGCTTACCTTCTTAACC	c15p54214006ES	TCATTCTCAGTAAACTATCGCAAG
chr15	54390535	54390691	56603243	56603399	-	61	156	9	L1PA2	"COLO2T,COLO2N"	51	156	L1PA2				c15p54390613FS	ATGAGTCATTGCAAATCAGAATAG	c15p54390613ES	CAAATGTCCAACAATGATAGACTG
chr15	54412052	54412339	56624760	56625047	+	42	287	11	L1PA2	"COLO2T,COLO2N"	67	218	"L1MA3,L1PA2"				c15p54412195FS	ACTTCTTCTTTAAATGTTTGGTGG	c15p54412195ES	TACTATGCAGCCATAAAAATGATG
chr15	55798795	55799308	58011503	58012016	-	4681	513	27	L1HS	"COLO2T,COLO2N"	7571	498	L1ME3B				c15p55799051FS	TGTTACCTTCTGGATTCTTTCTTC	c15p55799051ES	TGGGAGATATACCTAATGCTAGATG
chr15	56427529	56427836	58640237	58640544	+	15	307	3	L1PA5	"COLO2T,COLO2N"	35	308	L1PA5				c15p56427682FS	AACATATGACACAGAGCTTGATTG	c15p56427682ES	GATGAGTTTATGTCCTTTGTAGGG
chr15	58270028	58270235	60482736	60482943	+	65	207	5	L1PA4	"COLO2T,COLO2N"	66	305	"AluJb,L1PA4"				c15p58270131FS	CTAACTCCAGAACATCACAGATTG	c15p58270131ES	ATTAGGAAAAAGAGAAGCATGTTG
chr15	58834377	58834536	61047085	61047244	-	18	159	5	L1PA4	"COLO2T,COLO2N"	26	74	L1PA4		RORA		c15p58834456FS	TTAGTCTCATGGCTTAATTCCTTC	c15p58834456ES	AGGATGAGTTCATGTCCTTTGTAG
chr15	59116043	59116304	61328751	61329012	-	25829	261	15	noL1	"COLO2T,COLO2N"	14903	317		"LINE:Ewing,Iskow,Stewart"	RORA		c15p59116173FS	TGCTATTAGATTGCTTCACATCTC	c15p59116173ES	CCATTATCCCATTTTGAAGATAAG
chr15	59981758	59982161	62194466	62194869	+	1204	403	14	L1PA3	"COLO2T,COLO2N"	2050	648	"L1PA3,L1MA4"		VPS13C		c15p59981959FS	TGTGAAATAAAAATGGTGAAAGTG	c15p59981959ES	ACACAGCATATTCTCACTCATAGG
chr15	60032708	60033013	62245416	62245721	-	42	305	2	noL1	"COLO2T,COLO2N"	21	79	"L2c,L1PA3"		VPS13C		c15p60032860FS	CTCCCAGAGTACTGAGATTACAGG	c15p60032860ES	GTCATAAAAGATTTTCCAGAGGAG
chr15	60095373	60095729	62308081	62308437	+	61098	356	23	L1HS	"COLO2T,COLO2N"	75472	384	"L1HS,(A)n"		VPS13C		c15p60095551FS	AACACTGCATGTTCTCACTCATAG	c15p60095551ES	TCATTCTCAGTAAACTATCGCAAG
chr15	62219340	62219554	64432287	64432501	-	21	214	3	noL1	"COLO2T,COLO2N"	69	265	L1MC4		SNX1	SNX1.L	c15p62219447FS	AATACTGCAGATTCCTCAACTTTC	c15p62219447ES	AGCGAGACTCTGTCTCAAAAATAG
chr15	62515954	62516071	64728901	64729018	-	71	117	3	noL1	"COLO2T,COLO2N"	87	117	"L2b,AluSc5"		TRIP4		c15p62516012FS	AATATAAAAATTAGTTGGGCATGG	c15p62516012ES	CTTTAGTAGACACAGGGTTTCACC
chr15	63795505	63795673	66008451	66008619	-	15	168	3	L1PA3	"COLO2T,COLO2N"	2	76	"L1PA3,L2b"		DENND4A		c15p63795589FS	TAAACCCAGATCTCTCAAATCTTC	c15p63795589ES	TATATACCATGGAGTACCATGCAG
chr15	64531628	64532038	66744574	66744984	+	13093	410	44	L1HS	"COLO2T,COLO2N"	10631	504	L1HS		MAP2K1		c15p64531833FS	TTTTAATCGCTGGTTTTTAGTTTC	c15p64531833ES	TCATTCTCAGTAAACTATCGCAAG
chr15	68765517	68765941	70978463	70978887	-	31	424	7	L1PA2	"COLO2T,COLO2N"	29	419	"MER4D,L1PA2"		UACA		c15p68765729FS	TTTGTATTTTTGGTAGAGATGTGG	c15p68765729ES	AGTAAAAATTTTGGTTTCTTTTGAC
chr15	68814504	68815139	71027450	71028085	+	213867	635	38	L1HS	"COLO2T,COLO2N"	139533	673	"AluJb,L1HS,L1PA16"	LINE:dbRIP	UACA		c15p68814821FS	TCTTACACCTGTAGTCCCAGCTAC	c15p68814821ES	TGGGAGATATACCTAATGCTAGATG
chr15	69259494	69259786	71472440	71472732	+	4886	292	35	L1PA2	"COLO2T,COLO2N"	4836	189	"L1M3,L1PA2,(A)n"		THSD4		c15p69259640FS	TCATTTTTAACAGTTTCATTGAGG	c15p69259640ES	TAGACTGGATTAAGAAAATGTGGC
chr15	69667128	69667475	71880074	71880421	+	8720	347	19	L1PA2	"COLO2T,COLO2N"	5280	323	"MIR,L1PA2,(A)n,AluY"		"UNQ9334,THSD4"		c15p69667301FS	TGATATTTCCTCCTAATCTTCAGC	c15p69667301ES	AACAATGAGATTACATGGACACAG
chr15	71611277	71611437	73824224	73824384	-	23	160	4	L1HS	"COLO2T,COLO2N"	2	66	"L1HS,L1PA2,L2"		C15orf60		c15p71611357FS	CTTTATATGAAGTGTAGTGTGGCG	c15p71611357ES	CGTATGTTTACTGTGGCACTATTC
chr15	74900147	74900286	77113092	77113231	+	82	139	5	L1PA4	"COLO2T,COLO2N"	87	157	L1MC1		"SCAPER,KIAA1454"		c15p74900216FS	ATGTAAGTTTTTAAATGGCTTTGG	c15p74900216ES	CCAACAAGGATAGACTGGATTAAG
chr15	76805211	76805367	79018156	79018312	+	226	156	7	L1PA3	"COLO2T,COLO2N"	266	126	L1PA3				c15p76805289FS	AAAAATACAAAAACTAGCCAGGTG	c15p76805289ES	GACATCATTCACAATAGCAAAGAC
chr15	78250307	78250489	80463252	80463434	-	115	182	3	L1PA4	"COLO2T,COLO2N"	128	183	AT_rich		FAH		c15p78250398FS	TAGCAAGGGTACTATGTGAGACTG	c15p78250398ES	TAAAAATTTTCATTGCTCAATTCC
chr15	79956088	79956232	82169033	82169177	+	119	144	5	L1PA2	"COLO2T,COLO2N"	58	246	"L1PA2,AT_rich"				c15p79956160FS	GTTTTTATTTGTTGGATAGGATGC	c15p79956160ES	CATGAAAAATGATGAGTTCATGTC
chr15	81348332	81348686	83551278	83551632	-	41654	354	22	noL1	"COLO2T,COLO2N"	35642	528			HOMER2		c15p81348509FS	TTCTGTGGACACAGTACACCTG	c15p81348509ES	ATGTTGATCTGAACCATGATGAC
chr15	81910305	81910635	84119301	84119631	-	615	330	28	L1HS	"COLO2T,COLO2N"	879	280	"T-rich,L1HS"		"SH3GL3,EEN-B2-L1"		c15p81910470FS	AAGACAAAGATGATAAAGTGGACC	c15p81910470ES	TAGACTGGATTAAGAAAATGTGGC
chr15	82941936	82942184	85140932	85141180	+	83	248	4	noL1	"COLO2T,COLO2N"	10	74	L1M1				c15p82942060FS	GATGTGGCTCCTAGATTTTCTTAC	c15p82942060ES	CCTTTGAACATGAAGGAGAAATAG
chr15	84225770	84225897	86424766	86424893	-	364	127	5	L1PA3	"COLO2T,COLO2N"	31	72	L1PA3				c15p84225833FS	AATGAAGTAATTTCACTGGAAAGC	c15p84225833ES	CGTATGTTTATTGTGGCACTATTC
chr15	84495488	84495912	86694484	86694908	+	31	424	9	L1PA6	"COLO2T,COLO2N"	131	424	"L1PA3,L1PA6"		AGBL1		c15p84495700FS	GGCTCTCTGTTAATGGTGTATAGG	c15p84495700ES	CTTACTCATAGGTGGGAATTGAAC
chr15	85067927	85068051	87266923	87267047	+	46	124	4	L1PA4	"COLO2T,COLO2N"	14	518	L2		AGBL1		c15p85067989FS	TTTTTATTAGAGACGGGTTTTCAC	c15p85067989ES	TAGACTGGATTAAGAAAATGTGGC
chr15	85860098	85860356	88059094	88059352	+	1567746	258	78	L1HS	"COLO2T,COLO2N"	1177924	258	"L1HS,AluYc,L1MA7"	LINE:Iskow			c15p85860227FS	GTCTTTCTAATTCACTTAGGGTCG	c15p85860227ES	CAAATGTCCAACAATGATAGACTG
chr15	89519928	89520134	91718924	91719130	-	82	206	5	L1PA3	"COLO2T,COLO2N"	86	192	"(TA)n,L1PA3"		SV2B		c15p89520031FS	TTTGTATTTTTAATAGAGACGGGG	c15p89520031ES	ATGATGAGTTCATGTCCTTTGTAG
chr15	89666885	89667002	91865881	91865998	+	11	117	3	noL1	"COLO2T,COLO2N"	13	65	"(CA)n,L1ME3B"				c15p89666943FS	ACTTTGTCTCTGTGATATTCCTCC	c15p89666943ES	CAACATAAAGCTGTAAATGCAAAG
chr15	90106876	90107055	92305872	92306051	-	213	179	14	L1PA2	"COLO2T,COLO2N"	105	299	L1PA2				c15p90106965FS	CCAGCATTCATATTATAGCAACAC	c15p90106965ES	CAAATGTCCAACAATGATAGACTG
chr15	90480996	90481264	92679992	92680260	-	21	268	4	L1PA2	"COLO2T,COLO2N"	2	65	"L1PA2,L1MC4a"		SLCO3A1		c15p90481130FS	AATAGAAAACAAATGCAAGATTCC	c15p90481130ES	CAAATGTCCAACAATGATAGACTG
chr15	91036534	91037010	93235530	93236006	+	1231	476	11	L1PA2	"COLO2T,COLO2N"	1737	478	"L1M3,L1PA2,(A)n"		FAM174B		c15p91036772FS	GGAATGTGTGACTAAAGTACCTCC	c15p91036772ES	AAAGACAATGAATCAGAAAAATGC
chr15	91815897	91816290	94014893	94015286	+	10	393	5	noL1	"COLO2T,COLO2N"	11	393	"(A)n,AluY"		AK094352		c15p91816093FS	CTTTCTCATTATTGCCTATGTCTG	c15p91816093ES	TAGAGGACAGTTTATTTCCCTCAG
chr15	92815944	92816653	95014940	95015649	+	11	709	2	noL1	COLO2T	0	0	AluSx1		MCTP2		c15p92816298FS	TTGGATATAGAGAAAGAGGGATTG	c15p92816298ES	CTCATCTGTGCTTAGTTCTTGTTG
chr15	93204646	93204779	95403642	95403775	-	50	133	3	L1PA5	"COLO2T,COLO2N"	22	133	"L1PA5,L1ME1"				c15p93204712FS	GGTTTCCATTCTTTGATATTTGTC	c15p93204712ES	ATGCTACTGTAAAGACACATGCAC
chr15	95609679	95609863	97808675	97808859	-	49	184	5	L1PA2	"COLO2T,COLO2N"	39	184	"L1PA2,L2"				c15p95609771FS	ATACCTAGGAGTCACCAGTAATGC	c15p95609771ES	TCATTCTCAGTAAACTATCGCAAG
chr15	96458254	96458414	98640731	98640891	+	12	160	4	L1PA3	"COLO2T,COLO2N"	12	158	"AluJb,L1PA3"				c15p96458334FS	TAAATTTCGTGTCAGAAGTGAGTG	c15p96458334ES	CAAATGTCCAACAATGATAGACTG
chr15	98748440	98748715	100930917	100931192	-	13	275	3	noL1	"COLO2T,COLO2N"	23	65	L1MDa	"LINE:dbRIP,Ewing,Iskow"			c15p98748577FS	TCATCATGCTTAATGGTGAGTAAC	c15p98748577ES	TTTTGTGTCTCTTGTCTCTTTCTG
chr15	99761171	99761310	101943648	101943787	+	11	139	2	L1PA3	"COLO2T,COLO2N"	33	120	L1ME3F		PCSK6		c15p99761240FS	TAGTATTTAAAAAGCAATGGCCTG	c15p99761240ES	TCATTCTCAGTAAACTATCGCAAG
chr15	100197284	100197401	102379761	102379878	-	45	117	3	L1PA3	"COLO2T,COLO2N"	31	370	"L1PA3,L1M1,L1PA5"				c15p100197342FS	CACTGAATCTGTAGATTGCTTTTG	c15p100197342ES	CTTCATTTCCAAATTCTACCAAAC
chr16	2410001	2410155	2470000	2470154	+	52	154	2	L1PA2	"COLO2T,COLO2N"	16	65	"L1MB8,L1PA2"		ABCA17P		c16p2410078FS	AACTTTAAACACTTCATTGTTCCC	c16p2410078ES	CAAATGTCCAACAATGATAGACTG
chr16	2543128	2543400	2603127	2603399	-	41	272	5	noL1	"COLO2T,COLO2N"	23	275	"AluJb,FRAM,(A)n"		"PDK1,PDPK1"		c16p2543264FS	GCAGTAGAAGGTAGAAGAGGACAG	c16p2543264ES	TCAACACTTCCAGTTACTCAACAG
chr16	3199582	3200070	3259581	3260069	+	28	488	2	noL1	"COLO2T,COLO2N"	5	65	"AluJb,AluSx1"				c16p3199826FS	TGAAACCCCATCTCTACTAAAAATAC	c16p3199826ES	ATCACAACACCTTTAAAGTCCAAG
chr16	5051410	5051526	5111409	5111525	+	40	116	7	noL1	"COLO2T,COLO2N"	2	115	"(A)n,AluSx3"	Alu:Hormozdiari	"C16orf89,ALG1"		c16p5051468FS	CATCTAATAAGTTTGGCTGAGTTG	c16p5051468ES	AACACAGTGAAATCCCATCTCTAC
chr16	6669886	6670340	6729885	6730339	-	28	454	8	noL1	"COLO2T,COLO2N"	65	455	"MIR,(T)n,AluY"		A2BP1		c16p6670113FS	CCACACCATACAAGAGTACTTGAG	c16p6670113ES	TCTGCTAGGAGGTCTAAGAAAAAG
chr16	6914306	6914719	6974305	6974718	-	654	413	9	L1PA4	"COLO2T,COLO2N"	402	861	"MIR,L1PA4,MSTB"		A2BP1		c16p6914512FS	ACAAACATTAGTCAGGTATGGTGG	c16p6914512ES	AGGTAGGAATTGAACAATGAGAAC
chr16	7037043	7037800	7097042	7097799	-	124	757	7	noL1	"COLO2T,COLO2N"	232	89	L1MD2		A2BP1		c16p7037421FS	ATTAAAAAGCTCTTCATGCACTTC	c16p7037421ES	AATAAAATCTCACTGAAGGTGTCC
chr16	7542911	7543096	7602910	7603095	-	5819	185	8	noL1	"COLO2T,COLO2N"	91	65	"(TTCC)n,AluSx1"		A2BP1		c16p7543003FS	AGATTTATGTCTAAAGCATTTCCG	c16p7543003ES	TTAAAATTGTAGATACTGGGCTGG
chr16	7865358	7865857	7925357	7925856	+	200566	499	64	L1HS	"COLO2T,COLO2N"	141642	443	"THE1B,L1HS,AT_rich,MIRb,MIR3"				c16p7865607FS	AAATGATGAAAATGAGGTTCAAAG	c16p7865607ES	TCTTCTAATGGAACTCACTCATAGG
chr16	8050762	8051346	8110761	8111345	+	3579	584	17	L1HS	"COLO2T,COLO2N"	3994	573	"L1HS,L1PA3,A-rich"				c16p8051054FS	TTTTGTATTTTTGGTAGTGACCG	c16p8051054ES	TAATGCTAGATGACACGTTAGTGG
chr16	9293059	9293262	9385558	9385761	-	11	203	4	L1PA3	"COLO2T,COLO2N"	23	67	"L1PA3,AT_rich"				c16p9293160FS	TGAGATAGAGTTTTGCTCTTGTTG	c16p9293160ES	ATTCTCACTCATAGTTGGGAATTG
chr16	9582426	9583572	9674925	9676071	+	14	1146	4	noL1	"COLO2T,COLO2N"	98	653	"AluSx1,MER5B,L1MB5,FLAM_A,MIRc"				c16p9582999FS	AGATTCAGTAGAGAAGGAGTGTGG	c16p9582999ES	GTCTGTCTGAGCTTTATGTGAGTG
chr16	9585446	9585897	9677945	9678396	-	333836	451	99	L1HS	"COLO2T,COLO2N"	183152	451	"L1HS,(T)n,MIR3"				c16p9585671FS	CATGTAAAGCCAGTACTCAGACAC	c16p9585671ES	TCATTCTCAGTAAACTATCGCAAG
chr16	10287953	10288134	10380452	10380633	-	15	181	3	L1PA4	"COLO2T,COLO2N"	25	475	"L1PA4,HERVH-int"				c16p10288043FS	ACAAGCCTTACAAGTTAGTTCAGG	c16p10288043ES	TATACACCGTGGAATACTATGCAG
chr16	13191211	13191485	13283710	13283984	-	2239	274	14	L1PA2	"COLO2T,COLO2N"	5357	249	L1PA2				c16p13191348FS	TACACGACTTTTGTCTGAGTTAGC	c16p13191348ES	AGTTCCATTTTGATTTGAAGTAGC
chr16	13567388	13567503	13659887	13660002	+	12	115	2	L1PA4	COLO2T	0	0	L1PA4				c16p13567445FS	ACCATTCCACTCTTTGATTTTATG	c16p13567445ES	ATGACGAGTTCATGTCCTTTGTAG
chr16	14144514	14144932	14237013	14237431	-	11	418	4	L1PA4	"COLO2T,COLO2N"	7	413	"L2c,Kanga2_a,L1PA4"		MKL2		c16p14144723FS	ATGTAGAAGGATTGCTTTAACCAC	c16p14144723ES	ACAGAAACTAGACCCCATAAAATG
chr16	16119779	16120266	16212278	16212765	+	15	487	10	noL1	"COLO2T,COLO2N"	60	476	"(T)n,L1ME2"		ABCC1		c16p16120022FS	TGTTGTGTATTAGCATTTCATTCC	c16p16120022ES	AAACAAGAGTAAGAAACCATGAGG
chr16	16841499	16841936	16933998	16934435	-	121415	437	35	L1HS	"COLO2T,COLO2N"	222278	439	"L1HS,MIR3"				c16p16841717FS	ACAGATGGGAAGACATCTAAGAAC	c16p16841717ES	TCATTCTCAGTAAACTATCGCAAG
chr16	17005078	17005646	17097577	17098145	-	54	568	4	L1PA4	"COLO2T,COLO2N"	20	66	"L1PA4,L1PA6"				c16p17005362FS	AGCCTCTGTATTAGACCATTCATC	c16p17005362ES	CTAAGTGGGAATTGAACAATGAG
chr16	17049658	17049935	17142157	17142434	-	12	277	4	L1PA16	"COLO2T,COLO2N"	7	96	"L1MA9,L1PA4,L1PA16"				c16p17049796FS	CTGTTTCATTCGTCTCAAGTTATG	c16p17049796ES	TCATTCTCAGCAAACTATCACAAG
chr16	17117113	17117355	17209612	17209854	+	26	242	2	noL1	"COLO2T,COLO2N"	93	251	"L1ME4a,AluSz6,AluJb"		XYLT1		c16p17117234FS	ACTTTTATACTTCTATTTCCCCCG	c16p17117234ES	CTGAGGTGAGAGAATTACTTGAGC
chr16	17141865	17142057	17234364	17234556	+	2762	192	3	noL1	"COLO2T,COLO2N"	1183	191	AluSz6		XYLT1		c16p17141961FS	GTCCACCTACATTGTCCTCTACAC	c16p17141961ES	TGGAGTATGACTTATGAAACCAAC
chr16	18003697	18003809	18096196	18096308	+	32	112	5	noL1	"COLO2T,COLO2N"	52	112	"L1PB1,AT_rich,(A)n"				c16p18003753FS	AAGAAGCTCTGCTCAGTCTCTTAC	c16p18003753ES	TATGTTTGTGCCCATTTGTATATC
chr16	18739842	18740120	18832341	18832619	-	10	278	9	L1HS	"COLO2T,COLO2N"	7	83	"L1HS,(T)n"	LINE:dbRIP	SMG1		c16p18739981FS	TGACCAATACACTGTAGAGAAAGC	c16p18739981ES	GATGAGTTCATATCCTTTGTAGGG
chr16	18969729	18970122	19062228	19062621	-	41	393	6	L1PA4	"COLO2T,COLO2N"	70	327	"AluJr,L1PA4,L1M5"		TMC7		c16p18969925FS	TTTTTAATAGAGATGGGGTTTCAC	c16p18969925ES	AAAAGGTTTCATCCAAACTATCAC
chr16	20103904	20104373	20196403	20196872	-	57	469	6	L1PA2	"COLO2T,COLO2N"	20	469	L1PA2				c16p20104138FS	ACTATACCCTGTGTGTGGAAGAAC	c16p20104138ES	TAGATTCTGGATATTAGCCCTTTG
chr16	20576254	20576713	20668753	20669212	-	191	459	4	L1PA4	"COLO2T,COLO2N"	536	65	"AluSx1,L1PA4"		"ACSM1,MACS"		c16p20576483FS	TTCACACAGAGTCTCTCTCTTGTC	c16p20576483ES	AACTAGAAATACCATTTGACCCAG
chr16	20737866	20738337	20830365	20830836	-	15	471	5	noL1	"COLO2T,COLO2N"	13	69	"L1PA11,AT_rich,AluSp,(TTTCC)n"		"DKFZp434J0315,EXOD1,LOC81691"		c16p20738101FS	CAACATTTATTTTAAGTTCCTGGG	c16p20738101ES	CCCGGCTAATTTTGTATTTTTAG
chr16	22618283	22618828	22710782	22711327	-	2536	545	24	L1HS	"COLO2T,COLO2N"	1432	542	"(TTTTA)n,L1HS,MIR,Tigger4b"				c16p22618555FS	GTTTATTGTGTGTTCCCTCCTG	c16p22618555ES	TGGGAGATATACCTAATGCTAGATG
chr16	24026977	24027196	24119476	24119695	-	22	219	3	noL1	"COLO2T,COLO2N"	7	95	"T-rich,SVA_F,MER113"		PRKCB		c16p24027086FS	AATTCCCCTTTATCTGTATTTTCC	c16p24027086ES	ATCCTGTTGATCTATGACCTTACC
chr16	25213624	25214105	25306123	25306604	+	51717	481	79	L1HS	"COLO2T,COLO2N"	31839	571	"AluJb,L1HS,AT_rich,MIRc"				c16p25213864FS	TTTGTATTTTTAGTAGAGACGGGG	c16p25213864ES	TCATTCTCAGTAAACTATCGCAAG
chr16	25421470	25421951	25513969	25514450	-	11680	481	31	L1HS	"COLO2T,COLO2N"	9617	433	"L2a,AluJb,L1HS"				c16p25421710FS	ATACTTCAAAGCCAGAGCAAGTAG	c16p25421710ES	CAGTCAACTCAACCACTGAATAAG
chr16	25564343	25564477	25656842	25656976	+	10	134	3	L1PA4	COLO2T	0	0	"L1MD3,L1PA4"				c16p25564410FS	TTAAGTGAAGAAGGGAGATTCAAC	c16p25564410ES	AACTTGTGTGTGAATGTTTACTGC
chr16	26528796	26528945	26621295	26621444	-	20	149	5	noL1	"COLO2T,COLO2N"	24	68	AluJr				c16p26528870FS	TCTTTCTCTTACCAAAGAATCCAG	c16p26528870ES	AAGCTAGGATTAGTCTGATGTTGC
chr16	26957619	26957723	27050118	27050222	-	34	104	15	L1PA5	"COLO2T,COLO2N"	41	101	"L1PA5,(T)n"	LINE:dbRIP			c16p26957671FS	GAAAATGGAAGCAAACTAGAAAAC	c16p26957671ES	TTATAAAGAGGAGTTCTCCTGCAC
chr16	27333056	27333440	27425555	27425939	-	11967	384	10	noL1	"COLO2T,COLO2N"	14968	69	L1MEg	"LINE:Ewing,Iskow"	IL21R		c16p27333248FS	TATAAGATGTTTTTGTTTTTGCCC	c16p27333248ES	CCTCAAACTAGATCCTGTTCAGAC
chr16	27575719	27576047	27668218	27668546	+	364	328	12	L1PA2	"COLO2T,COLO2N"	650	831	"L1PA2,L1MC4"		KIAA0556		c16p27575883FS	GCTAGGATTATAGGTGTTAGCCAC	c16p27575883ES	TCATTCTCAGTAAACTATCGCAAG
chr16	31231439	31231765	31323938	31324264	-	31	326	7	L1PA4	"COLO2T,COLO2N"	64	70	"AluJb,AT_rich,AluSg,L1PA8"		ITGAM		c16p31231602FS	TAATGCTATCAACAAAGAACATGC	c16p31231602ES	GTAACAAACCTACATGTTCTGCAC
chr16	31386528	31386975	31479027	31479474	-	17	447	4	noL1	"COLO2T,COLO2N"	8	75	"FLAM_C,L1PA17"				c16p31386751FS	GTTAGTCTGATGATGTGTTGAAGG	c16p31386751ES	CTATTCACAATAGCAAAGTCATGG
chr16	31666080	31666836	31758579	31759335	-	12	756	2	noL1	"COLO2T,COLO2N"	27	578	L1PA4		ZNF720		c16p31666458FS	ATGTGTTCTCATTGTTCAATTCC	c16p31666458ES	CCATAAAAACCCTAGAAGAAAACC
chr16	32431032	32431383	32523531	32523882	-	1510	351	10	noL1	"COLO2T,COLO2N"	1866	352	ALR/Alpha	LINE:Ewing			c16p32431207FS	TTTATCCTGGGATATTCACTTTTC	c16p32431207ES	GTCATATGCTCATTCATCTCTCTG
chr16	32432748	32433165	32525247	32525664	-	14095	417	32	noL1	"COLO2T,COLO2N"	11656	417	ALR/Alpha	"LINE:Ewing,Stewart"			c16p32432956FS	AAATTCTACAAAAACAGCATTTCC	c16p32432956ES	TAGAAGGAGACTGTCTGAGAAACC
chr16	33662213	33662594	33754712	33755093	-	347681	381	36	L1HS	"COLO2T,COLO2N"	262846	380	"L1HS,AluSx"				c16p33662403FS	ACATGCCTTAGGTCACATCATAC	c16p33662403ES	GATGAGTTCATATCCTTTGTAGGG
chr16	33819928	33820243	33912427	33912742	+	74	315	7	L1PA3	"COLO2T,COLO2N"	77	269	"L1PA3,ALR/Alpha"				c16p33820085FS	ACTCAAGCAAAAGAAAATTTCAAC	c16p33820085ES	TCATTCTCAGTAAACTATCGCAAG
chr16	33929012	33929429	34021511	34021928	-	984	417	4	noL1	"COLO2T,COLO2N"	2101	66	ALR/Alpha				c16p33929220FS	TTTGTAGTATCTGGAAGTGGACAG	c16p33929220ES	TCAAAAGAAATGTTCAACTCTGTG
chr16	34699901	34700409	34842400	34842908	-	1835	508	36	L1HS	"COLO2T,COLO2N"	482	504	"L1HS,AluSx1,(T)n,MER57A-int"				c16p34700155FS	ACAGAGTCTCACTCTATCACCCAG	c16p34700155ES	AACCATCATTCTCAGTAAACTATCG
chr16	45228968	45229076	46671467	46671575	+	27	108	2	noL1	"COLO2T,COLO2N"	3	65	"AluJr,L2b"				c16p45229022FS	CATAATTACAGATTGTGAAAACGC	c16p45229022ES	ATTTACACTTTTCTGGTTTTCCTG
chr16	45285215	45285318	46727714	46727817	-	222	103	16	noL1	"COLO2T,COLO2N"	338	114	"SVA_F,(T)n,AluJr4"		"ORC6,ORC6L"	ORC6L.L	c16p45285266FS	CTAACAACTTGGAACTAGTGTTGC	c16p45285266ES	TGTGTAGAAAGAAGTAGACATGGG
chr16	46237903	46238234	47680402	47680733	+	265	331	20	L1HS	"COLO2T,COLO2N"	208	216	"L1HS,(A)n,L1M5"		PHKB		c16p46238068FS	ATAAATAAAAACTGAGGGGGAAAG	c16p46238068ES	TCATTCTCAGTAAACTATCGCAAG
chr16	46561590	46561703	48004089	48004202	+	23	113	2	noL1	COLO2T	0	0					c16p46561646FS	GTAAGAGACTCTGCCAAATTAACC	c16p46561646ES	TTCTTGTTCCTCTTATATTCCCAC
chr16	46606866	46607161	48049365	48049660	-	21	295	6	L1PA2	"COLO2T,COLO2N"	96	70	"L1PA2,MIR"				c16p46607013FS	GTGACACACACTTTTAAAACAACC	c16p46607013ES	AACTAGAAATACCATTTGACCCAG
chr16	47253698	47253811	48696197	48696310	-	14	113	2	L1PA6	"COLO2T,COLO2N"	4	114	"(TTTA)n,L1PA6"				c16p47253754FS	GATGATTTCATGTTTTTGCTATTG	c16p47253754ES	CAAATGTCCAACAATGATAGACTG
chr16	49671790	49672065	51114289	51114564	-	537	275	12	L1HS	"COLO2T,COLO2N"	69	229	L1HS				c16p49671927FS	CTAAGACTGTTATCCACCATTTCC	c16p49671927ES	GCAAGTTTTGCATTTATACATAATACC
chr16	52276127	52276326	53718626	53718825	+	21	199	3	L1PA11	"COLO2T,COLO2N"	1	65	"L1PA11,L1PA4"		"KIAA1005,RPGRIP1L"		c16p52276226FS	TTTCTCCATAACCTTACCAACATC	c16p52276226ES	CAAATGTCCAACAATGATAGACTG
chr16	52639496	52639881	54081995	54082380	+	1986	385	37	L1HS	"COLO2T,COLO2N"	1055	385	"L1HS,A-rich"		"KIAA1752,FTO"		c16p52639688FS	TTGAATGTGCATGGAATACTTATC	c16p52639688ES	TCATTCTCAGTAAACTATCGCAAG
chr16	53390666	53390926	54833165	54833425	-	19	260	4	L1PA4	"COLO2T,COLO2N"	24	67	"L2b,L1PA4"				c16p53390796FS	CATTCAGCATTTGATGTTTCATAG	c16p53390796ES	GACTTCTCTCTTTCTTGTCCTCAC
chr16	54196183	54196453	55638682	55638952	+	5471	270	21	L1PA3	"COLO2T,COLO2N"	9843	415	"L1PA3,L1MEg"				c16p54196318FS	AAATTTTAGAGTGTTTCTTGGTGC	c16p54196318ES	GTGATGAGTTCATGTCCTTTGTAG
chr16	57431056	57431377	58873555	58873876	+	3195	321	24	L1HS	"COLO2T,COLO2N"	3374	320	L1HS				c16p57431216FS	CATAAACAGAATTACGACATGAGG	c16p57431216ES	TCATTCTCAGTAAACTATCGCAAG
chr16	57560149	57560374	59002648	59002873	-	13	225	2	noL1	"COLO2T,COLO2N"	13	225					c16p57560261FS	AGATGCTCTTTGGGATATAGAGTG	c16p57560261ES	AAATGAAGTATGTGAGAAGTGCTG
chr16	57584565	57585269	59027064	59027768	-	48483	704	35	L1HS	"COLO2T,COLO2N"	52630	509	"T-rich,(TTTA)n,L1P2,L1HS,L1PA4"				c16p57584917FS	ACTGTTGGAAAAGTGCAGTATTAG	c16p57584917ES	TAATGCTAGATGACACGTTAGTGG
chr16	57592407	57592940	59034906	59035439	-	196	533	11	L1PA4	"COLO2T,COLO2N"	455	494	"L2c,AluY,L1PA4"				c16p57592673FS	ACTTTGGTTCAGACTAACGTCTTC	c16p57592673ES	AGGAGATATACCTAATGCCAAATG
chr16	58104232	58104625	59546731	59547124	+	5470	393	28	L1PA2	"COLO2T,COLO2N"	6193	403	"Tigger2,L1PA2"				c16p58104428FS	AGAGATCTCAAACCAATTCAAGAG	c16p58104428ES	TCATTCTCAGTAAACTATCGCAAG
chr16	58271558	58271891	59714057	59714390	-	24426	333	40	L1PA3	"COLO2T,COLO2N"	34020	460	"T-rich,L1PA3,MER96"				c16p58271724FS	GATTGATGGTTATCCAGCTTTTAC	c16p58271724ES	TCATTCTCAGTAAACTATCGCAAG
chr16	58786663	58787087	60229162	60229586	-	123	424	3	L1PA2	"COLO2T,COLO2N"	73	423	"LTR2,(TTTA)n,L1PA2"				c16p58786875FS	ACTTTCCTATCAATGGGTTTGTAG	c16p58786875ES	ATGCACACATATGTTTATTATGGC
chr16	59196607	59196999	60639106	60639498	-	994	392	12	L1PA3	"COLO2T,COLO2N"	803	207	"L1PA3,LTR1"				c16p59196803FS	CTCTAGGGGAGCATACAGACAG	c16p59196803ES	TAAAAACCCCTGACTCACTCATAG
chr16	59471359	59471707	60913858	60914206	+	3098	348	15	L1HS	"COLO2T,COLO2N"	4929	420	"L1HS,MER65C,MLT1B"	LINE:dbRIP			c16p59471533FS	AGAAGCATTTTAAGTGGGTACTTG	c16p59471533ES	TACACCATGGAATACTATACAGCC
chr16	60266972	60267135	61709471	61709634	+	3694	163	6	L1PA2	"COLO2T,COLO2N"	978	750	"L1PA2,L1MEc"		CDH8		c16p60267053FS	TTTAAGTCTACAATTCGTGTTTGC	c16p60267053ES	TTTAAACAACAAAACAAAAAGTGC
chr16	60398880	60399137	61841379	61841636	+	1146	257	9	L1PA2	"COLO2T,COLO2N"	1491	360	"L1PA2,(CAAA)n,LTR16B1"		CDH8		c16p60399008FS	ACAGGTTTGAAAGTAGATGGAGTC	c16p60399008ES	ATGATGAGTTCGTGTTCTTTGTAG
chr16	61744762	61744962	63187261	63187461	+	30	200	4	L1PA3	"COLO2T,COLO2N"	21	200	L1MEf				c16p61744862FS	CTCTTTTATTTCAACAGGGGATAC	c16p61744862ES	TGGAAATCATCATTCTCAGTAAAC
chr16	61814545	61814723	63257044	63257222	+	24	178	3	L1PA2	"COLO2T,COLO2N"	22	65	L2b				c16p61814634FS	TCTTCAATAGTGACAAAGCAGAAG	c16p61814634ES	CCATCATTCTCAGTAAACTATCCC
chr16	62037799	62037907	63480298	63480406	+	161	108	10	noL1	"COLO2T,COLO2N"	178	109	(A)n				c16p62037853FS	TTTCTTATTTCCTTTAAGCACTGAG	c16p62037853ES	AGTTTGGAATTATCAAGACAGCTC
chr16	62741114	62741382	64183613	64183881	+	11	268	8	L1PA3	"COLO2T,COLO2N"	9	269	"L1PA3,(A)n"				c16p62741248FS	ATTTGTGAAGTATGAATATGTGCG	c16p62741248ES	TGGAAATCATCATTCTCAGTAAAC
chr16	63828209	63828367	65270708	65270866	-	15	158	4	L1PA2	"COLO2T,COLO2N"	20	162	L1PA2				c16p63828288FS	TGTGACAAGGACAGAAACAATATC	c16p63828288ES	TAGACTGGATTAAGAAAATGTGGC
chr16	64287365	64288133	65729864	65730632	+	39008	768	40	L1HS	"COLO2T,COLO2N"	56376	374	"L1HS,A-rich,MIRb"				c16p64287749FS	CTTCCCTTTTCTTTCTCTTTCTTC	c16p64287749ES	CTTGGTTCAAATATTATTCCCATC
chr16	67170264	67170380	68612763	68612879	+	11	116	3	noL1	"COLO2T,COLO2N"	24	82	"AluSx,L1M4"				c16p67170322FS	GCTAGAAACATTCATGTACAGGTC	c16p67170322ES	GAATGGATTTAAAAACATGATTCAG
chr16	67174421	67174922	68616920	68617421	-	11193	501	29	L1HS	"COLO2T,COLO2N"	8407	501	"L1HS,(T)n"				c16p67174671FS	TAAGGAAGGAGTGAGTCTCTGATG	c16p67174671ES	TCATTCTCAGTAAACTATCGCAAG
chr16	67796396	67796784	69238895	69239283	-	20	388	7	noL1	"COLO2T,COLO2N"	9	228	AluSx3		SNTB2		c16p67796590FS	CCTACATGAGTATTTTTCCACTCC	c16p67796590ES	GGAAAGAAAATAGAAGAAAAAGCC
chr16	69585548	69585770	71028047	71028269	+	1264	222	12	noL1	"COLO2T,COLO2N"	1192	221	(TGGA)n	"LINE:Ewing,Stewart"	HYDIN		c16p69585659FS	AATCTTTATTTTAAGGAGCTTCCC	c16p69585659ES	TGTACCACTTTACACTACCACCTG
chr16	72299154	72299376	73741653	73741875	+	11206	222	27	L1PA4	"COLO2T,COLO2N"	7834	219	L1ME3C				c16p72299265FS	TTTTTGTTGCTTTTGTTTTACATC	c16p72299265ES	TCATTCTCAGCAAACTATCTCAAG
chr16	72415544	72415846	73858043	73858345	-	66	302	12	L1PA2	"COLO2T,COLO2N"	41	317	"L1PA2,AT_rich,MER103C"				c16p72415695FS	GACATCTCAGAAATCACACTAAGC	c16p72415695ES	TACACTATGGAATACTATGCAGCC
chr16	74677985	74678102	76120484	76120601	-	16	117	3	L1PA4	"COLO2T,COLO2N"	38	117					c16p74678043FS	TTACTCTCAGCCTAAAGTATTGGG	c16p74678043ES	AGGATGAGTTCATGTCCTTTGTAG
chr16	78152627	78152771	79595126	79595270	-	10	144	2	L1PA4	"COLO2T,COLO2N"	4	65	"L1MC,LTR48,L1PA4"				c16p78152699FS	ATGTAGGTCTTTTTGGTTCTCAAC	c16p78152699ES	TCTCTTCTCAGTCCATTGAGTTTC
chr16	78288329	78288514	79730828	79731013	+	144	185	9	L1PA2	"COLO2T,COLO2N"	307	70	L1PA2				c16p78288421FS	AGAAGAGGCCCATTAATTAGAGAC	c16p78288421ES	GGTTTTCTTCTAGGGTTTTTATGG
chr16	78347713	78347868	79790212	79790367	+	56	155	9	L1PA3	"COLO2T,COLO2N"	74	172	"GA-rich,L1PA3"				c16p78347790FS	GGGTGTTTTTAGAAACTGTGACTC	c16p78347790ES	GATGAGTTTATGTCCTTTGTAGGG
chr16	79233254	79233511	80675753	80676010	+	16	257	5	L1PA4	"COLO2T,COLO2N"	6	68	"L1MA2,L1PA4"		CDYL2		c16p79233382FS	CCAGCTAATTTTTGCATTTTTAG	c16p79233382ES	ACTTCAATCAGAAAGAAAAGGATG
chr16	79435341	79435897	80877840	80878396	+	25	556	3	noL1	"COLO2T,COLO2N"	14	547	L1M3c		AK093002		c16p79435619FS	TTTCCTTTAAGCACTGTGACTATG	c16p79435619ES	AAGAGGTGACTACTCCTTCAAATG
chr16	80573526	80573707	82016025	82016206	+	228	181	7	L1PA3	"COLO2T,COLO2N"	173	373	"L1PA3,L1PA16"				c16p80573616FS	CCATTCAATATGATGTTAAAGCTG	c16p80573616ES	TCATTCTCAGTAAACTATCGCAAG
chr16	81377545	81377651	82820044	82820150	-	11	106	2	L1PA5	"COLO2T,COLO2N"	1	65	"L1PA5,(T)n"		CDH13		c16p81377598FS	GCAAATTTAAAGAGAATGATGGAG	c16p81377598ES	AATACTATGCAGCCATAGAAAAGG
chr16	81694005	81694215	83136504	83136714	-	18	210	6	noL1	"COLO2T,COLO2N"	2	65	"(T)n,AluSz"		CDH13		c16p81694110FS	GACATGAGATTACATGACACACTG	c16p81694110ES	CTAAAAATATAAAAATCAGCCGGG
chr16	82234333	82234971	83676832	83677470	+	1829	638	18	L1HS	"COLO2T,COLO2N"	1363	467	"L1HS,MIRb"	LINE:dbRIP	CDH13		c16p82234652FS	CCCTCGTTACAGCTTATGTTAAAG	c16p82234652ES	TGGGAGATATACCTAATGCTAGATG
chr16	83049558	83050216	84492057	84492715	+	9177	658	29	L1HS	"COLO2T,COLO2N"	2749	658	L1HS	LINE:dbRIP	"ATP2C2,KIAA0703"		c16p83049887FS	AAGAGAAGAGAGCCATTTACTCAC	c16p83049887ES	GAACAATGAGATCACATGGACAC
chr16	84830397	84830771	86272896	86273270	+	754	374	13	L1PA3	"COLO2T,COLO2N"	1397	373	"L1PA3,AT_rich"				c16p84830584FS	TCAGGGTCTTAGGAATAAAACATC	c16p84830584ES	TGGAAATCATCATTCTCAGTAAAC
chr16	85269157	85269489	86711656	86711988	-	22	332	5	L1PA2	"COLO2T,COLO2N"	27	353	"T-rich,L1PA2,MLT1C"				c16p85269323FS	AGACTGTGCTCAACAAGACTTTC	c16p85269323ES	TCATTCTCAGTAAACTATCGCAAG
chr16	88092131	88092470	89564630	89564969	+	36	339	7	noL1	"COLO2T,COLO2N"	60	69	"(A)n,AluSx,AluJo"				c16p88092300FS	CGATTAATTTTCTCAGCTAAGTCC	c16p88092300ES	ACGTGTCTTTTATTGCTTTTCTTC
chr17	1205006	1205181	1258256	1258431	+	131	175	6	noL1	"COLO2T,COLO2N"	150	108	"(A)n,FLAM_A"		YWHAE		c17p1205093FS	AATATCTCAACCTTGTAATCCAGC	c17p1205093ES	ATACCTCCAAGTTCTAGGCAATAG
chr17	2298743	2298873	2351993	2352123	+	400	130	15	noL1	"COLO2T,COLO2N"	716	111	"SVA_E,(A)n,AluSc"		METT10D		c17p2298808FS	TGGTTTAGCTGTTCATTTATTTAGG	c17p2298808ES	CTGTGTGGATAGAAGTAGACATGG
chr17	2895582	2896009	2948832	2949259	-	20	427	6	L1PA7	"COLO2T,COLO2N"	40	428	"L1PB3,L1PA7"				c17p2895795FS	AGAACATATGGTATTTGGTGTTCC	c17p2895795ES	ATTAAAAAGTCAGGAAACAACAGG
chr17	3009595	3009884	3062845	3063134	+	12	289	2	L1PA7	"COLO2T,COLO2N"	3	65	AluY				c17p3009739FS	GATGGATGGATGGATAGATAAGAC	c17p3009739ES	AAACTAACACAGGAACAGAAAACC
chr17	5037964	5038065	5097240	5097341	+	12	101	2	L1PA6	"COLO2T,COLO2N"	2	65	AluSz		"AK021878,BC029580"		c17p5038014FS	TCATGCATGTTACAAATATTTTCC	c17p5038014ES	TATTGAGAGATCCACAGCTAAGAC
chr17	5267347	5268028	5326623	5327304	+	11	681	2	noL1	"COLO2T,COLO2N"	12	65	"AluJb,AluJr4"		"RPAIN,RIP"		c17p5267687FS	CATGATTACATCACTGCACTCC	c17p5267687ES	AATCAGTTGTATGAATCCAGTTCC
chr17	9466006	9466488	9525281	9525763	+	3734	482	26	L1HS	"COLO2T,COLO2N"	6800	485	"L1HS,AluJo"		WDR16		c17p9466247FS	GGGTAAAACAAACATATTTTCAGG	c17p9466247ES	ACACCGCATATTCTCACTCATAG
chr17	10747352	10747505	10806627	10806780	-	22	153	2	L1PA3	"COLO2T,COLO2N"	23	166	HAL1				c17p10747428FS	TTAGGGGGATATAAAATTCTAGGC	c17p10747428ES	ACTAGATTAAGAAAATGTGGCACC
chr17	11704868	11705093	11764143	11764368	-	78	225	4	L1PA3	"COLO2T,COLO2N"	98	230	"HAL1,L1PA3,AluSp"		DNAH9		c17p11704980FS	TGTCTTCGTTTTATTCGTAAACTG	c17p11704980ES	TCATTCTCAGTAAACTATCGCAAG
chr17	12023415	12023573	12082690	12082848	-	81	158	4	L1PA4	"COLO2T,COLO2N"	45	167	L1MEf				c17p12023494FS	GTCACACATAAGTCAAATTCCAAG	c17p12023494ES	TAATGCTAAATGACGAGTTAATGG
chr17	12499774	12500138	12559049	12559413	+	10004	364	29	L1HS	"COLO2T,COLO2N"	2362	371	"L1HS,AT_rich"				c17p12499956FS	CAGAGCTTTCTAAGTCTCTTCACC	c17p12499956ES	TCATTCTCAGTAAACTATCGCAAG
chr17	13914835	13914945	13974110	13974220	+	16119	110	20	noL1	COLO2T	0	0	MIR3		COX10		c17p13914890FS	TATAGAATGGAAAGGCAGAAAAAC	c17p13914890ES	CGTTTATTATTTGTTTTTCCCAAC
chr17	17227371	17227834	17286646	17287109	-	236	463	6	noL1	"COLO2T,COLO2N"	519	69	(T)n				c17p17227602FS	ATTAATGTTCCGTTGCCTAGATAC	c17p17227602ES	ATGGTCTTGAAGCCCCACTTC
chr17	20705136	20705275	20764544	20764683	+	13	139	3	L1PA3	"COLO2T,COLO2N"	13	99	L1PB1				c17p20705205FS	TTTTATTTCCATAGGTTTTTAGGG	c17p20705205ES	TCATTCTCAGTAAACTATCGCAAG
chr17	20893047	20893432	20952455	20952840	+	11	385	2	noL1	"COLO2T,COLO2N"	9	65	"AluJr,L1MEf"				c17p20893239FS	TCATTGTCCCCTTTAAATAATGTC	c17p20893239ES	AGTATATGAGGAATTCAAAGCAGC
chr17	21434378	21434597	21493785	21494004	+	88	219	9	L1PA3	"COLO2T,COLO2N"	91	216	"SVA_D,L1PA3"				c17p21434487FS	CAGATAAACAAGTGAACAAAGGTC	c17p21434487ES	CAAATGTCCAACAATGATAGACTG
chr17	22355042	22355431	25330915	25331304	-	2149	389	10	noL1	"COLO2T,COLO2N"	2652	282	L1PREC2				c17p22355236FS	TAGTTATCTTTTCTGCTCCTCTGC	c17p22355236ES	AAAGAAGCCATCAACAAAGTAAAC
chr17	25093061	25093696	28068935	28069570	-	40	635	7	noL1	"COLO2T,COLO2N"	63	70	"AluSc8,AluJo,(CAAA)n"		"hSSH-2,SSH2"		c17p25093378FS	TTTTTCTATTTTTGGTAGAGACGG	c17p25093378ES	ATACCAGCACTTTGGAAGACTAAG
chr17	25422437	25422789	28398311	28398663	+	651	352	12	noL1	"COLO2T,COLO2N"	1895	331	L1MA5	"LINE:dbRIP,Ewing,Iskow"	EFCAB5		c17p25422613FS	TTTTTCTTTTTGGTGGCTAAATAC	c17p25422613ES	AAACTACTGAAGAAAACATGAGGG
chr17	25809976	25810649	28785850	28786523	+	13	673	2	L1PA4	"COLO2T,COLO2N"	7	67	"(TTTA)n,L1MB4,AluSz,L1PA4"		CPD		c17p25810312FS	AAAACAGTGATACTGATGAAGCTG	c17p25810312ES	ATACAAACATTAGCCAGGCTGTAG
chr17	26670846	26671505	29646720	29647379	+	19	659	7	noL1	"COLO2T,COLO2N"	12	652	"MER5A1,L4"		"EVI2A,NF1"		c17p26671175FS	CCAATGACATATAACAACCATTTC	c17p26671175ES	GTATTTGTGAACGCAATTTTACTG
chr17	26683373	26683781	29659247	29659655	-	8260	408	12	L1HS	"COLO2T,COLO2N"	1275	408	"L1HS,AluSg,(TGAA)n"	LINE:dbRIP	NF1		c17p26683577FS	TTGGAACCATTTTAAAAAGAAGAG	c17p26683577ES	GATGAGTTCATATCCTTTGTAGGG
chr17	28092466	28093179	31068353	31069066	+	10	713	2	noL1	"COLO2T,COLO2N"	3	66	"MamRep605,MER2,AluY"		MYO1D		c17p28092822FS	TTGTTTAGAGAATAATGACCCCTC	c17p28092822ES	TTCAAATTTTGGAAGGTTATTAGC
chr17	28244294	28244543	31220181	31220430	+	10	249	2	L1PA2	"COLO2T,COLO2N"	5	208	"(CAAAA)n,L1PA2,AluSx1"				c17p28244418FS	TACTCTCAAGTCACCAGTCTCATC	c17p28244418ES	TCATTCTCAGTAAACTATCGCAAG
chr17	28648885	28649281	31624772	31625168	-	59	396	8	L1PA5	"COLO2T,COLO2N"	196	144	"AluJb,CT-rich,L1PA5"		ACCN1		c17p28649083FS	AAATGGTGATAAGAGCCACATTAC	c17p28649083ES	CAATCTATCACAAGCACAGAAAAC
chr17	29216839	29217349	32192726	32193236	+	9335	510	16	L1HS	"COLO2T,COLO2N"	5392	307	"L1HS,L1ME3"		ACCN1		c17p29217094FS	AGAACTTTCAAAAACTGATGTTGG	c17p29217094ES	TTTTCCAGTCATAAGCTAATCTCC
chr17	29837678	29838214	32813565	32814101	+	31	536	11	noL1	"COLO2T,COLO2N"	309	152	"AluJb,L1MB2"	"LINE:dbRIP,Ewing,Iskow"			c17p29837946FS	AGTTACACACATGACCCTACTGTG	c17p29837946ES	GAAAACATACAAAAGTTACCCAGG
chr17	33297849	33297952	36223736	36223839	-	19	103	4	noL1	"COLO2T,COLO2N"	3	97	(TG)n		"AK094896,BC132826"		c17p33297900FS	AGGAAATTTCAAAATGAGAATCAG	c17p33297900ES	GTTAAGGAGCCTAAAGTTTATCCC
chr17	34293518	34294213	37039992	37040687	-	77	695	5	noL1	"COLO2T,COLO2N"	81	695	"(T)n,AluSq"		LASP1		c17p34293865FS	ATCACTTTGCTTCCTAACACCTAC	c17p34293865ES	AACAAGAGCGAAACTCTGTCTC
chr17	34659044	34659747	37405518	37406221	-	523	703	8	noL1	"COLO2T,COLO2N"	593	73	"AT_rich,AluSg,FLAM_A"	Alu:Hormozdiari			c17p34659395FS	CAGAAACCTTGTTAAAACACTTGG	c17p34659395ES	AGGAGAATTGCTTGAATCCTAGAG
chr17	36490898	36491022	39237372	39237496	+	41	124	2	L1PA4	"COLO2T,COLO2N"	15	124	"MSTD-int,L1PA4"				c17p36490960FS	GCTAGTATTGCAGGCTGATAGTTC	c17p36490960ES	AAATTTCCAAGAAAAATGTTGAAG
chr17	37081507	37081673	39827981	39828147	+	37	166	3	L1PA4	"COLO2T,COLO2N"	51	168	"(TAA)n,L1PA4,THE1B"				c17p37081590FS	AAAACACTAAAAATTAGCCAGACG	c17p37081590ES	CAGGTAAAGAGAGAGAACTTGTCC
chr17	40710100	40710365	43354317	43354582	-	27	265	7	L1PA4	"COLO2T,COLO2N"	28	146	"AluSz6,L1PA4"		MAP3K14		c17p40710232FS	TTCATATTTTTAGTAGAGGCAGGG	c17p40710232ES	TAACCAAACCAGATATTAGGGAAC
chr17	40798737	40798872	43442954	43443089	+	13	135	4	L1PA3	"COLO2T,COLO2N"	11	199	"(GAAA)n,L1PA3"				c17p40798804FS	CTGATCAAAACACTCCAATATTCC	c17p40798804ES	GTAAGATCTATAGAGAGGCTGGGC
chr17	41497082	41498096	44141262	44142274	-	27	1014	9	L1PA3	"COLO2T,COLO2N"	15	873	"L2a,L1PA3,AT_rich,(A)n"		KIAA1267		c17p41497589FS	TTCTGACATTCCTGTTATCAACTC	c17p41497589ES	CTGGAGAGCTCAGATAAAGAAGAG
chr17	44492318	44492879	47137319	47137880	-	50	561	3	noL1	"COLO2T,COLO2N"	17	558	"HAL1,AluSc8,AluSg"				c17p44492598FS	TAAAAATACAAAAATAAGCTGGGC	c17p44492598ES	TCTTTTCATTTGCTTTCTAAATCC
chr17	45393583	45394001	48038584	48039002	+	16	418	3	noL1	"COLO2T,COLO2N"	13	68	"(GAAA)n,AluJb,AluSz,AluSc"				c17p45393792FS	ATGTCAAATAACTTGCCTAAAAGC	c17p45393792ES	AACAACAACAACAACAACAAAAAC
chr17	48932096	48932516	51577097	51577517	-	3028	420	21	L1PA3	"COLO2T,COLO2N"	2419	420	L1PA3				c17p48932306FS	ATGCCCAATAAATGTCTACTGAAC	c17p48932306ES	TCATTCTCAGTAAACTATCGCAAG
chr17	49273942	49274300	51918943	51919301	-	221	358	8	L1PA3	"COLO2T,COLO2N"	102	72	"L1PA3,MER57-int"				c17p49274121FS	AAACAATCTGTCTCTTGTCTTTCC	c17p49274121ES	AACTAGAAATACCATTTGACCCAG
chr17	50063051	50063264	52708052	52708265	-	432	213	10	L1PA4	"COLO2T,COLO2N"	764	142	MLT1D				c17p50063157FS	TTCACTATGTTCTCTAACTGGCTC	c17p50063157ES	CAATAAGAAGAGGAAGAACTGACC
chr17	50919664	50919919	53564665	53564920	+	13	255	3	L1PA6	"COLO2T,COLO2N"	14	164	"L2c,L1PA6"				c17p50919791FS	TGGAATTTTACTTAAGCCACTCTC	c17p50919791ES	TGAGAATACAAAGGAGAATAAGGC
chr17	50940047	50940293	53585048	53585294	+	37	246	4	L1PA2	"COLO2T,COLO2N"	58	245	L1PA2				c17p50940170FS	TCTTAGAGGTAGAAAACAAGGCAC	c17p50940170ES	TCATTCTCAGTAAACTATCGCAAG
chr17	54374929	54375272	57020147	57020490	+	299	343	11	L1PA3	"COLO2T,COLO2N"	323	343	"AluSz6,L1PA3,FRAM"		"KIAA1072,PPM1E"		c17p54375100FS	TTTGGTTTTTGTTTTATTTGTGTG	c17p54375100ES	TAAGCATTGCCATTTTATATGTTC
chr17	55298222	55298432	57943440	57943650	-	23	210	2	noL1	"COLO2T,COLO2N"	15	65	"AluJb,AluSx"		TUBD1		c17p55298327FS	TCCCCTAAACTTTAACTGAACTTG	c17p55298327ES	TTTAACACTTCCATTGCTAACTTG
chr17	56202532	56203031	58847750	58848249	-	863	499	3	noL1	"COLO2T,COLO2N"	120	66	"AluSz6,L1MA4A,AluSc5"		BCAS3		c17p56202781FS	TCAGTTCCGTATGTTAGTCTTGAG	c17p56202781ES	AGATACAAAAATTAGGTAGGCGTG
chr17	56437653	56437892	59082871	59083110	-	91	239	8	L1PA2	"COLO2T,COLO2N"	117	254			BCAS3		c17p56437772FS	ACGTACGTAGGTAAAGTCATAGGC	c17p56437772ES	TCATTCTCAGTAAACTATCGCAAG
chr17	62022705	62023214	64592243	64592752	-	58452	509	42	L1HS	"COLO2T,COLO2N"	69600	490	L1HS		PRKCA		c17p62022959FS	AATCAGAAGTGCTAGAAAGAGAGC	c17p62022959ES	TCATTCTCAGTAAACTATCGCAAG
chr17	62751262	62752001	65320800	65321539	+	153020	739	52	L1HS	"COLO2T,COLO2N"	107882	550	"(A)n,HERV16-int,LTR1D,L1HS,AluSc"				c17p62751631FS	GAAATGAAGTCTTGAGTCACAACC	c17p62751631ES	AGTTCACTGTCACTCTCTAGACCC
chr17	63645639	63645758	66134044	66134163	-	80	119	6	noL1	"COLO2T,COLO2N"	141	119	AluY		CR595591		c17p63645698FS	GAGATAGCATCTCACTCTGTGACC	c17p63645698ES	AATCTCATTCTGGTTTTAATTTGC
chr17	65247981	65248131	67736386	67736536	-	54	150	4	L1PA3	"COLO2T,COLO2N"	152	142	"L1PB1,L1PA3"				c17p65248056FS	TGATAACTGTTTTGTTTGAAGAGG	c17p65248056ES	TCATTCTCAGTAAACTATCGCAAG
chr17	65869067	65869366	68357472	68357771	+	15870	299	12	noL1	"COLO2T,COLO2N"	11773	266		"LINE:Beck,dbRIP,Ewing,Stewart"			c17p65869216FS	AAATTTCAAGTATGTCTTCCAAGG	c17p65869216ES	CAGGTATCAATTAAAGTGGAAAGG
chr17	65972673	65973301	68461078	68461706	+	9844	628	30	L1HS	"COLO2T,COLO2N"	9099	202	"L1HS,(A)n,Tigger3b"	LINE:dbRIP			c17p65972987FS	TATATATGTGCAGGTGTGTAGGTG	c17p65972987ES	TGGGAGATATACCTAATGCTAGATG
chr17	66052007	66052588	68540412	68540993	-	48679	581	49	L1HS	"COLO2T,COLO2N"	40921	581	"MLT1L,L1HS,AT_rich,(T)n"				c17p66052297FS	ACCTGCACTGTGTGTATTTCATAG	c17p66052297ES	TAATGCTAGATGACACGTTAGTGG
chr17	68718180	68718551	71206585	71206956	+	21	371	8	noL1	"COLO2T,COLO2N"	11	71	"AT_rich,AluJo"		FAM104A		c17p68718365FS	ATAAATGTGGATGTATTAAACGGC	c17p68718365ES	CACAAAATGGTATTCTGTAACTGC
chr17	73858874	73859008	76347279	76347413	-	16	134	3	noL1	"COLO2T,COLO2N"	29	133	"AT_rich,(T)n"	"Alu:Hormozdiari,Stewart,Witherspoon"			c17p73858941FS	GTCACTCTGTGACTCAGGCTGG	c17p73858941ES	GTAGAACTCTGGACTTCCCACTC
chr17	77761811	77762197	80168522	80168908	+	24	386	4	noL1	"COLO2T,COLO2N"	19	394	"AluSx1,L1MC4"		CCDC57		c17p77762004FS	TTCATATTACTGATTTTTGGCAAG	c17p77762004ES	TGCTAAAATTAGTGACAGAAGTATGG
chr18	359112	359456	369112	369456	-	12	344	6	L1HS	"COLO2T,COLO2N"	18	670	"MER63A,L1HS,(TTTTTA)n"		COLEC12		c18p359284FS	CAAAACAAAACACAAAAACAAAAC	c18p359284ES	AACCTAAAATTATAATCACGCCAC
chr18	531680	532088	541680	542088	+	109403	408	77	L1HS	"COLO2T,COLO2N"	127943	482	"MER45A,L1HS"				c18p531884FS	CCCAGCTAATTTTTGTGTTTTTAG	c18p531884ES	TCATTCTCAGTAAACTATCGCAAG
chr18	826402	827153	836402	837153	-	7894	751	33	L1HS	"COLO2T,COLO2N"	4860	751	"L1HS,AluSq2,AluYb8"				c18p826777FS	AATTGGAAGCAAAATTACAGGTAG	c18p826777ES	TATACACCGTGGAATACTATGCAG
chr18	960529	960817	970529	970817	-	429	288	18	L1PA8	"COLO2T,COLO2N"	735	376	"L1PA8,(TTTA)n"				c18p960673FS	ATTCAGAGATTCGACTTCTTTCTG	c18p960673ES	AAAAACCAAACACCACATATTCTC
chr18	3729731	3730039	3739731	3740039	+	157	308	5	L1PA3	"COLO2T,COLO2N"	146	288	L1PA3		DLGAP1		c18p3729885FS	TATACATTATCCCAATTCTCAGGG	c18p3729885ES	TCATTCTCAGTAAACTATCGCAAG
chr18	4435063	4435349	4445063	4445349	-	336	286	8	L1PA2	"COLO2T,COLO2N"	814	291	L1PA2				c18p4435206FS	TAAGGTGACTCATTTAAGCCTTTC	c18p4435206ES	GAGCCCAGTAGCTAGTAGAGTGAC
chr18	5322118	5322505	5332118	5332505	-	8093	387	27	L1HS	"COLO2T,COLO2N"	8089	328	"(TTTTA)n,L1HS"				c18p5322311FS	GGAGAATGGCTGTTAAATAGTGAC	c18p5322311ES	GATGAGTTCATATCCTTTGTAGGG
chr18	5670963	5671327	5680963	5681327	-	2191	364	30	L1PA3	"COLO2T,COLO2N"	2196	290	"L1PA3,L2b,MLT2A1,(TTA)n"				c18p5671145FS	ACTTAGAGTCCAATGTTCAAGGAG	c18p5671145ES	ATGATGAGTTCATGTCCTTTGTAG
chr18	6821153	6821536	6831153	6831536	-	75	383	5	L1HS	"COLO2T,COLO2N"	88	298	"L1HS,L1MD,L1MC4"		ARHGAP28		c18p6821344FS	AGCCTTGTTTACAATTTTGCTTAC	c18p6821344ES	TGACAAGGATATGTAAGTGCTGTC
chr18	7840861	7841164	7850861	7851164	+	24	303	2	noL1	COLO2T	0	0	L1MEg		PTPRM		c18p7841012FS	TTTGGGTCCATAACTCTTCTTTAC	c18p7841012ES	GAAATTCATATTTTGCTAAGGAGG
chr18	8162257	8162718	8172257	8172718	-	78	461	8	noL1	"COLO2T,COLO2N"	151	74	"AT_rich,(A)n,MER5A"		PTPRM		c18p8162487FS	ATAAAGACATACCCGATACTGAGC	c18p8162487ES	ATTGTTTCATGCATCATCATACTC
chr18	8700458	8700941	8710458	8710941	-	96	483	11	L1PA2	"COLO2T,COLO2N"	320	494	"L1PA2,(T)n"		KIAA0802		c18p8700699FS	AAGTATTCAGAAATTCAGGTGAGC	c18p8700699ES	TGGAAATCATCATTCTCAGTAAAC
chr18	9857656	9858104	9867656	9868104	-	187	448	6	L1PA8	"COLO2T,COLO2N"	142	447	"L1PA8,AluY,(TTTTC)n"				c18p9857880FS	GTTTCTCTGAACCTCAGTTACCTC	c18p9857880ES	AAACCCCGTCTCTACTAAAAATG
chr18	12481272	12481446	12491272	12491446	+	64	174	3	noL1	"COLO2T,COLO2N"	535	162	L1M2	"LINE:Beck,dbRIP,Ewing"	SPIRE1		c18p12481359FS	ATTGATTTTCCTTGTTTAATCCTG	c18p12481359ES	GTAGTTCTAGCCAGAGCAGTTAGG
chr18	13826325	13826786	13836325	13836786	+	135640	461	113	L1HS	"COLO2T,COLO2N"	140110	677	L1HS				c18p13826555FS	AAAGAACGTGAGAGAAAGAGGAC	c18p13826555ES	TCATTCTCAGTAAACTATGGCAAG
chr18	13965307	13965914	13975307	13975914	-	3383575	607	119	L1HS	"COLO2T,COLO2N"	2020671	517	"(TCC)n,L1HS,(T)n"				c18p13965610FS	CTAATTCTATTGTTTAAGCTGCCC	c18p13965610ES	TAATGCTAGATGACACGTTAGTGG
chr18	15368226	15368441	15378226	15378441	+	13	215	3	noL1	"COLO2T,COLO2N"	12	218	AluSp	LINE:Iskow			c18p15368333FS	TTTTTAGTAGAGATGGGGTTTCAC	c18p15368333ES	ATGAATACAGCTCACAAAACACAC
chr18	16766809	16767331	18512811	18513333	+	25	522	3	noL1	"COLO2T,COLO2N"	23	827	ALR/Alpha				c18p16767070FS	ATGCTTCTGTCTACTTTTTATGGG	c18p16767070ES	GTACTCATCTGACAGAGTTGAACG
chr18	16769488	16769610	18515490	18515612	+	10	122	2	noL1	"COLO2T,COLO2N"	9	369	ALR/Alpha				c18p16769549FS	TTATATGAAGATATTCCCGTTTCC	c18p16769549ES	GATGTGTGTCCTCAACTAACAGAG
chr18	16771580	16772178	18517582	18518180	-	82	598	4	noL1	"COLO2T,COLO2N"	1024	1300	ALR/Alpha				c18p16771879FS	GTGATGTTTGCTTTTAAGTCACAG	c18p16771879ES	AGTTGAACATTCCCTTTCATAGAG
chr18	18423978	18424080	20169980	20170082	-	130	102	3	noL1	"COLO2T,COLO2N"	45	65	"AluSg,L2"				c18p18424029FS	ACCATAGACAGGAATCAAAAGAAG	c18p18424029ES	ATATTAAAGAAGTGACAGCAAGGG
chr18	20157053	20157559	21903055	21903561	-	2543	506	10	L1HS	"COLO2T,COLO2N"	76	591	"L1HS,AluSg7,AluSz"	LINE:Iskow	OSBPL1A		c18p20157306FS	TACCAACCACAACAAAATAAAGTG	c18p20157306ES	TCATTCTCAGTAAACTATCGCAAG
chr18	20158371	20158585	21904373	21904587	+	303	214	5	noL1	"COLO2T,COLO2N"	592	396	"AT_rich,(A)n,AluSx3"		OSBPL1A		c18p20158478FS	TTTTAGTAGAGACAGGGTTTCACC	c18p20158478ES	CACTTGTAATCCCAGCTACTCAG
chr18	21321336	21321871	23067338	23067873	+	5831	535	42	L1HS	"COLO2T,COLO2N"	10851	454	"L1HS,L2,A-rich"				c18p21321603FS	TGAAGATACCAGGAAAAGAGTAGC	c18p21321603ES	TCATTCTCAGTAAACTATCGCAAG
chr18	22981819	22982267	24727821	24728269	-	43	448	5	L1PA4	"COLO2T,COLO2N"	34	429	"L1PA13,L1PA4"		CHST9		c18p22982043FS	CTCTGTCTCTGAAAAACAGGAGTC	c18p22982043ES	AACAATGAGAATACATGGACACAG
chr18	23520320	23520539	25266322	25266541	+	1025	219	6	noL1	COLO2T	0	0					c18p23520429FS	ATTTTTAATACGGTAAATCCCCTC	c18p23520429ES	CATTGTTTTCAAAAAGTATTCACG
chr18	25472914	25473191	27218916	27219193	-	1322	277	6	noL1	"COLO2T,COLO2N"	3929	628	L1MCa	LINE:Ewing			c18p25473052FS	TGCTTTTGGTACTATTGTAAGTGG	c18p25473052ES	ATACCAGTTCTCCAGAATCTCTTC
chr18	28439125	28439684	30185127	30185686	-	3793918	559	136	L1HS	"COLO2T,COLO2N"	3236277	559	"L1HS,L1MA3,AT_rich"				c18p28439404FS	ATGTTTCCTTTTTGATTTTCTGTC	c18p28439404ES	AATAATGTGCTACTCATAGGTGGG
chr18	28475754	28475875	30221756	30221877	+	206	121	2	L1PA3	"COLO2T,COLO2N"	202	164					c18p28475814FS	CTAAATACGTGGAAAGACACACTG	c18p28475814ES	TCATTCTCAGTAAACTATCGCAAG
chr18	28690547	28690662	30436549	30436664	-	20	115	3	L1PA2	"COLO2T,COLO2N"	4	117	"L1PA2,AT_rich"				c18p28690604FS	AAGATGAAGATGAGGAAGAAACTG	c18p28690604ES	CAAATGTCCAACAATGATAGACTG
chr18	30815289	30815891	32561291	32561893	-	16	602	3	noL1	"COLO2T,COLO2N"	34	69	"AluSx,AluY"				c18p30815590FS	TAAAAATATGAAAATTAGCCAGCC	c18p30815590ES	ATACATAAAATTAGCCAGGTGTGG
chr18	32821398	32821741	34567400	34567743	+	512332	343	52	L1HS	"COLO2T,COLO2N"	399409	330	"L1HS,AT_rich,L1ME1"		KIAA1328		c18p32821569FS	CATTTAAAGCCTGTGTAATGTGTC	c18p32821569ES	TCATTCTCAGTAAACTATCGCAAG
chr18	32939414	32939916	34685416	34685918	+	22	502	5	noL1	"COLO2T,COLO2N"	33	499	"AluSx1,AluJr4"		KIAA1328		c18p32939665FS	GTATGTTACCTAGGAGTGGGACTG	c18p32939665ES	CTGTTATCCCACTACTTTGAGAGG
chr18	33659684	33660148	35405686	35406150	+	66406	464	64	L1HS	"COLO2T,COLO2N"	77101	363	"L1HS,AT_rich,L1ME3C"				c18p33659916FS	GAATTTTTGCTTCTTTTTGGTATG	c18p33659916ES	TCACTCTCAGTAAACTATCGCAAG
chr18	35405541	35405744	37151543	37151746	+	58	203	5	L1PA2	"COLO2T,COLO2N"	106	270	L1PA2		AK090603		c18p35405642FS	CGGCATTTTTCTATTCTAACATTC	c18p35405642ES	TCATTCTCAGTAAACTATCGCAAG
chr18	35693643	35694043	37439645	37440045	-	26793	400	33	L1HS	"COLO2T,COLO2N"	17354	342	"(TTTTA)n,L1HS"		AK309717		c18p35693843FS	TCTAGCACATGGAAAACAGTAAAC	c18p35693843ES	TCATTCTCAGTAAACTATCGCAAG
chr18	35764348	35764677	37510350	37510679	+	230	329	13	L1PA2	"COLO2T,COLO2N"	2795	329	"L1PA2,L1ME2"				c18p35764512FS	TACATTGAATCATTTTGTTTTTGG	c18p35764512ES	AAATGATGAGTTCATGTCCTTTG
chr18	36647208	36647483	38393210	38393485	-	13	275	4	L1PA7	COLO2T	0	0	"L1PA7,(TCTCTG)n"				c18p36647345FS	AAGGAGTTTGTTTTATCAGCATTG	c18p36647345ES	ACAGACTGGATAAAGAAAATGTGG
chr18	36682180	36682499	38428182	38428501	+	6977	319	35	L1HS	"COLO2T,COLO2N"	4385	321	"L1HS,(A)n"				c18p36682339FS	GTTAAGTGACACAGTCAGGATTTG	c18p36682339ES	TCATTCTCAGTAAACTATCGCAAG
chr18	36913690	36913816	38659692	38659818	-	13	126	3	L1PA4	"COLO2T,COLO2N"	3	65	"L1PB1,L1PA4"				c18p36913753FS	AAAGTGGACATTGAGAATTAGAGG	c18p36913753ES	TCATCATATGAAAAAGACACTTGC
chr18	37005621	37005877	38751623	38751879	-	75	256	4	L1PA2	"COLO2T,COLO2N"	109	222					c18p37005749FS	AATAAATGGATAAGGATGTCTTGG	c18p37005749ES	GTGAAAGTTAATGAGAACACATGG
chr18	37614957	37615277	39360959	39361279	+	309	320	26	L1HS	"COLO2T,COLO2N"	424	496	"L1MA9,L1HS,(A)n,A-rich"				c18p37615117FS	AGAGAACCTGAAGATATAGTTGCC	c18p37615117ES	TCATTCTCAGTAAACTATCGCAAG
chr18	39160577	39160677	40906579	40906679	+	719	100	19	L1PA2	"COLO2T,COLO2N"	307	81	L1PA2				c18p39160627FS	ACTTCAATTTGGTTTAGTCTGGTC	c18p39160627ES	TTTATTGCAGCATTATTCACAATC
chr18	39286428	39286883	41032430	41032885	+	38489	455	78	L1HS	"COLO2T,COLO2N"	30190	477	"L1HS,(A)n,AluSq"	LINE:dbRIP			c18p39286655FS	TCTGAAACGTAAAAGCACAGATAG	c18p39286655ES	GATGAGTTCATATCCTTTGTAGGG
chr18	39752573	39753051	41498575	41499053	+	928	478	19	L1HS	"COLO2T,COLO2N"	288	478	"AluSq2,L1HS,(A)n"				c18p39752812FS	TTTGTAAAATTGTCCACAATGAAG	c18p39752812ES	TCATTCTCAGTAAACTATCGCAAG
chr18	40913697	40914198	42659699	42660200	-	277632	501	60	L1HS	"COLO2T,COLO2N"	338665	462	"L1HS,Tigger2"				c18p40913947FS	AATTTCATAGTCACCTCCTATTGC	c18p40913947ES	TCATTCTCAGTAAACTATCGCAAG
chr18	41095221	41095396	42841223	42841398	-	23	175	2	L1PA16	"COLO2T,COLO2N"	27	66	"L1PA3,L1PA4"		SLC14A2		c18p41095308FS	AATATACCCATGTAACAAACCTGC	c18p41095308ES	TACTATGCAGCCATAAAAATGATG
chr18	42676151	42676258	44422153	44422260	+	69	107	9	noL1	"COLO2T,COLO2N"	192	107	"AluJb,AT_rich"		PIAS2		c18p42676204FS	TGAGTTCTTTTCAGTATCTTCAGG	c18p42676204ES	TGCTCCCTATTCTTACATAGAAGG
chr18	43128530	43128649	44874532	44874651	-	120	119	4	L1PA2	"COLO2T,COLO2N"	43	70	"L1PA2,AT_rich"		BC040860		c18p43128589FS	AGAATATTACTGAAAAGCTGCCAC	c18p43128589ES	CAAATGTCCAACAATGATAGACTG
chr18	43446724	43447156	45192726	45193158	+	7740	432	36	L1HS	"COLO2T,COLO2N"	5684	562	"L1HS,AT_rich,AluSx"				c18p43446940FS	ATTTACTCAATTTTTCTCAATCGC	c18p43446940ES	TCATTCTCAGTAAACTATCGCAAG
chr18	45832583	45833331	47578585	47579333	+	13	748	3	L1PA3	"COLO2T,COLO2N"	2	65	"L1PA3,L1MB4"		MYO5B		c18p45832957FS	CAGCAAAGGATTAACATCAGTTAG	c18p45832957ES	CTGTAAACTAGTTCGACCATTGTG
chr18	45931163	45931440	47677165	47677442	+	155	277	6	L1PA3	"COLO2T,COLO2N"	104	420	L1PA3		MYO5B		c18p45931301FS	TTCTTTATCCTTGGAATTTCAGAC	c18p45931301ES	CAAATGTCCAACAATGATAGACTG
chr18	46123415	46124373	47869417	47870375	-	15740	958	40	L1HS	"COLO2T,COLO2N"	23555	961	"L1HS,L1MCa,AluSx"				c18p46123894FS	ATCTGCTTTGCCTGAAATTAATAC	c18p46123894ES	AAACATACAAGAAGGGCAAAATAG
chr18	46165194	46165657	47911196	47911659	+	4189	463	36	L1HS	"COLO2T,COLO2N"	2894	455	"L1HS,(A)n"	LINE:dbRIP	C18orf24	C18orf24.4	c18p46165425FS	CGATCATTTATGTTTATTAAGGGG	c18p46165425ES	GATGTTTCCAGATTCAGAGTTAGG
chr18	47469811	47470227	49215813	49216229	-	52474	416	28	noL1	"COLO2T,COLO2N"	65552	318	"AluJb,L1MC3"	"LINE:Ewing,Iskow"			c18p47470019FS	TTCTTTTAGGCTTTCTTAGCTGAC	c18p47470019ES	AAAGAGCAACATGCTATGTACTTG
chr18	47665700	47665813	49411702	49411815	+	18	113	3	noL1	"COLO2T,COLO2N"	8	65	L1M1				c18p47665756FS	ATGTTTGAAGGATATTTTCACCAG	c18p47665756ES	CACCAACAAACATCTATAAGCATC
chr18	48351594	48351737	50097596	50097739	-	1884	143	5	noL1	"COLO2T,COLO2N"	1430	318		"LINE:Ewing,Iskow,Stewart"	DCC		c18p48351665FS	AATTAGTTTTTCTAGCTGGCTGTG	c18p48351665ES	GATCTGATCTGATAGCAAGACCTC
chr18	48803642	48803743	50549644	50549745	+	17	101	10	noL1	"COLO2T,COLO2N"	37	97	(TAAAAA)n		DCC		c18p48803692FS	CTGTCAAATCAATCCACACATAAG	c18p48803692ES	TATAAATCTCGACTTTTTGGAAGG
chr18	48876529	48876760	50622531	50622762	+	1282	231	10	L1PA6	"COLO2T,COLO2N"	1738	268	"AluJr4,L1PA6"		DCC		c18p48876644FS	TTCCTTCTATTTTGCTTCTCTCTC	c18p48876644ES	AATGAGCATGAATACACAGAAATG
chr18	49240641	49240932	50986643	50986934	-	12	291	9	L1PA3	"COLO2T,COLO2N"	14	87	L1PA3	"Alu:Hormozdiari,Stewart,Witherspoon"	DCC		c18p49240786FS	AGACTAGTTTGATGGGATTCTGTC	c18p49240786ES	AACTAGAAATACCATTTGACCCAG
chr18	50016393	50016777	51762395	51762779	-	88902	384	55	noL1	"COLO2T,COLO2N"	53527	459	HAL1	"LINE:dbRIP,Ewing,Iskow"			c18p50016585FS	TTACTCATGGATACTTTGGTGTTG	c18p50016585ES	TTGTTCTTTTCTAACATTGTCTGG
chr18	50210894	50211379	51956896	51957381	+	192851	485	83	L1HS	"COLO2T,COLO2N"	91407	421	L1HS	LINE:dbRIP			c18p50211136FS	CATATTTGAAGAATGCCTAAAAGG	c18p50211136ES	TCATTCTCAGTAAACTATCGCAAG
chr18	51054302	51054743	52903304	52903745	-	16	441	3	noL1	"COLO2T,COLO2N"	4	66	"(TG)n,L3"		TCF4		c18p51054522FS	GTCAAAAATATGAAACCAGAAAGG	c18p51054522ES	AATCAAAACCTCAATGGAAAATAG
chr18	52631373	52631658	54480375	54480660	+	2812	285	18	L1HS	"COLO2T,COLO2N"	6828	268	"L1HS,MLT2B3,L1MD"		"WDR7,KIAA0541"		c18p52631515FS	TAAGGGTTATAAAATCCTCACCAG	c18p52631515ES	CTTAATCATAGGTGGGAATTGAAC
chr18	53035067	53035601	54884069	54884603	-	76	534	5	noL1	"COLO2T,COLO2N"	20	69	"AluJb,L1MB5,AluYf5"				c18p53035334FS	CTGTAGTCCTAGCTACTCTGGAGG	c18p53035334ES	GGTTTTTAAAATAAACAGTGCAGG
chr18	55221780	55222195	57070800	57071215	-	3224	415	23	L1PA2	"COLO2T,COLO2N"	6111	400	"L1PA2,L1MC4a"				c18p55221987FS	GAATCTTGGTAAACTGGACACTTC	c18p55221987ES	TCATTCTCAGTAAACTATCGCAAG
chr18	55835669	55835958	57684689	57684978	-	646	289	8	L1PA3	"COLO2T,COLO2N"	667	341	L1PA3				c18p55835813FS	TTCCCAGATAGAGTTTTCACTTTC	c18p55835813ES	TCATTCTCAGTAAACTATCGCAAG
chr18	56322791	56323258	58171811	58172278	-	45672	467	37	L1HS	"COLO2T,COLO2N"	73562	468	L1HS				c18p56323024FS	AGGGATTCTGATACTTTCTCAGTG	c18p56323024ES	ACAATGTACATCTGCATCATTCTC
chr18	56747127	56747311	58596147	58596331	+	40	184	5	L1PA3	"COLO2T,COLO2N"	49	137	L1PA3				c18p56747219FS	TTCACCTTCTCTCTCTTTTTATGC	c18p56747219ES	CAAATGTCCAACAAAGATAGACTG
chr18	56894331	56894454	58743351	58743474	+	75	123	2	L1PA2	"COLO2T,COLO2N"	25	65	L2				c18p56894392FS	AGGCTAACTCTACTCGATCAAATG	c18p56894392ES	TCATTCTCAGTAAACTATCGCAAG
chr18	57722020	57722757	59571040	59571777	+	251900	737	60	L1HS	"COLO2T,COLO2N"	179794	554	"L1HS,AluSx1,MLT1B"				c18p57722388FS	CATCTCCCCTCTGTATTTGTCTAC	c18p57722388ES	TGGGAGATATACCTAATGCTAGATG
chr18	57914271	57914787	59763291	59763807	-	9842	516	20	L1HS	"COLO2T,COLO2N"	4616	519	"L1HS,AluSq2"		PIGN		c18p57914529FS	GACATCAATGAAAGAAGTATGCTG	c18p57914529ES	AAGGGATAGCATTGGGAGATATAC
chr18	58730481	58730879	60579501	60579899	+	7692	398	22	L1HS	"COLO2T,COLO2N"	8170	493	"L1HS,AT_rich,AluSz"		PHLPP		c18p58730680FS	TAATTCTTGAAAATACATCTGGGC	c18p58730680ES	TCATTCTCAGTAAACTATCGCAAG
chr18	59180755	59181481	61029775	61030501	-	90308	726	50	L1HS	"COLO2T,COLO2N"	71225	727	L1HS		KDSR	KDSR.8	c18p59181118FS	TCAGGATCTGCAGTATCTATGATG	c18p59181118ES	GAGGGATAGCATTGGGAGATATAC
chr18	59552743	59552967	61401763	61401987	+	69	224	6	L1PA3	"COLO2T,COLO2N"	201	85	L1MA2				c18p59552855FS	TGTTGAAGTCTCCAGCTATTATTG	c18p59552855ES	TCATTCTCAGTAAACTATCGCAAG
chr18	59684587	59685252	61533607	61534272	+	32172	665	24	L1HS	"COLO2T,COLO2N"	38899	661	"L1HS,MIR"				c18p59684919FS	TTCACAGTATGAAATTGACCTCC	c18p59684919ES	TAATGCTAGATGACACGTTAGTGG
chr18	60425787	60425985	62274807	62275005	+	14	198	2	L1PA4	"COLO2T,COLO2N"	9	118	"L2,L1PA4"				c18p60425886FS	AAAAATTCCCTTTAAAAGACATCC	c18p60425886ES	GCATAACAGGCTTATCTAGGAGAG
chr18	61597239	61597578	63446259	63446598	-	4308	339	15	L1HS	"COLO2T,COLO2N"	6005	837	L1HS		CDH7		c18p61597408FS	TGATTGAACTAAAGATTCAGGGTC	c18p61597408ES	GATGAGTTCATATCCTTTGTAGGG
chr18	65749566	65749828	67598586	67598848	+	1948	262	20	L1PA4	"COLO2T,COLO2N"	2603	322	"L1MEd,L1PA4"		CD226		c18p65749697FS	TTGCGATAAAATAAGTTTCTGTTG	c18p65749697ES	CATTCTCAGCAAACTATCACAAAG
chr18	65936392	65936495	67785412	67785515	+	104	103	4	noL1	"COLO2T,COLO2N"	114	241	L1M2		"DKFZp434G145,RTTN"		c18p65936443FS	ATTTTCTTTTCTTGTAGTTCCCAC	c18p65936443ES	AAACTAGAAGTCACCAAAAGAAGG
chr18	66503180	66503464	68352200	68352484	-	1350	284	19	L1HS	"COLO2T,COLO2N"	408	418	"L1HS,(T)n"				c18p66503322FS	TTCCATTTCTTTTTAGCAGTTTTC	c18p66503322ES	TAGACTGGATTAAGAAAATGTGGC
chr18	66564431	66564749	68413451	68413769	-	7598	318	16	L1HS	"COLO2T,COLO2N"	6510	398	ERV3-16A3_I-int				c18p66564590FS	AGATAGGCCTGTAATGTGTAGGTC	c18p66564590ES	TCATTCTCAGTAAACTATCGCAAG
chr18	66941264	66941479	68790284	68790499	-	30	215	2	noL1	"COLO2T,COLO2N"	20	217	L1PA3				c18p66941371FS	TTACCATCTAGAATGCAGTGATTG	c18p66941371ES	CAAATGTCCAACAATGATAGACTG
chr18	67175656	67175851	69024676	69024871	+	19753	195	14	L1HS	"COLO2T,COLO2N"	12106	195	"L1HS,L1M5"				c18p67175753FS	TTAACAAAGTAGTCATTTCAGGGAG	c18p67175753ES	CAAATGTCCAACAATGATAGACTG
chr18	67243584	67243701	69092604	69092721	+	22	117	2	L1PA13	"COLO2T,COLO2N"	14	118	L1MA8				c18p67243642FS	AATTTGAGAATTGACGATGTTTTC	c18p67243642ES	GGACATTTAGGTTGATTCCATATC
chr18	67449385	67449538	69298405	69298558	+	5986	153	9	noL1	COLO2T	0	0					c18p67449461FS	AACCTTGAGTGTTATGCTTCTTTC	c18p67449461ES	AAGACCACTGAAGCTCAGTATAGC
chr18	67473457	67473902	69322477	69322922	-	175770	445	79	L1HS	"COLO2T,COLO2N"	240846	458	"L2a,L1HS"				c18p67473679FS	ATTAGCTCAATTTAACCACTCCAC	c18p67473679ES	TCATTCTCAGTAAACTATCGCAAG
chr18	68205944	68206347	70054964	70055367	+	235	403	7	L1HS	"COLO2T,COLO2N"	303	90	"(TAAAAA)n,L1HS"				c18p68206145FS	TAAAAGGAAAAGTGGAGTAGGAAG	c18p68206145ES	AACCAGTAACTATCCCTCACAAAC
chr18	68457174	68457276	70306194	70306296	-	26	102	2	noL1	"COLO2T,COLO2N"	4	65	(T)n				c18p68457225FS	TGCTTATGACTAAATTTCAAGCTG	c18p68457225ES	AAAGCCTGACTAGCAATGTCTTAC
chr18	70840257	70840582	72711269	72711594	+	843	325	10	L1HS	"COLO2T,COLO2N"	511	167	L1HS	LINE:dbRIP	ZNF407		c18p70840419FS	AAGTTGCAAAATAAAGTGACAATG	c18p70840419ES	ATACACCATGGAATATTATGCAGC
chr18	71693767	71694451	73564779	73565463	+	379	684	13	L1HS	"COLO2T,COLO2N"	1174	687	"L1MA8,L1HS,AT_rich"				c18p71694109FS	GATATTTGGAGGATATGTCTCAGC	c18p71694109ES	TAGATGATACATTAGTGGGTGCAG
chr18	72485035	72485198	74356047	74356210	+	31	163	2	L1PA4	"COLO2T,COLO2N"	8	163	MLT1L				c18p72485116FS	AAATCCGAGGTGACTAGAGACTG	c18p72485116ES	AATGTTAAATGGAGAGTTAATGGG
chr18	74977877	74978405	76876889	76877417	+	22872	528	48	L1HS	"COLO2T,COLO2N"	32349	502	"L2a,L1HS,AT_rich"		"DKFZp434A042,ATP9B"		c18p74978141FS	GACCTCCTTTCCAACTACTTCTTC	c18p74978141ES	TGGGAGATATACCTAATGCTAGATG
chr19	1497794	1498089	1546794	1547089	-	12	295	2	L1PA6	"COLO2T,COLO2N"	2	295	"AluJb,AT_rich,L1PA6"				c19p1497941FS	TCCGGCTAATTTTTGTATTTTTAG	c19p1497941ES	TCCTTTGTTTATAAATTACCCAGC
chr19	3196135	3196419	3245135	3245419	+	19	284	2	noL1	"COLO2T,COLO2N"	3	65	(TG)n		BRUNOL5		c19p3196277FS	AGAACTACACTAAGACAACGAGCC	c19p3196277ES	CTTGTCTGCATATATGTGTGTGTG
chr19	4626349	4626841	4675349	4675841	-	10	492	3	noL1	"COLO2T,COLO2N"	15	68	"AluSp,(T)n"		DPP9	DPP9.L	c19p4626595FS	TTTAATGTGTCTACTTCTTCCACG	c19p4626595ES	GTCTGTAATCCCAGCACTTTG
chr19	4982646	4982907	5031646	5031907	-	21	261	2	noL1	"COLO2T,COLO2N"	6	261			JMJD2B		c19p4982776FS	ACACACTGTGACCGTCTAGTCTAC	c19p4982776ES	ATCGGAGTCAGACTGTCCTCTC
chr19	7239621	7239984	7288621	7288984	+	84	363	4	noL1	"COLO2T,COLO2N"	158	365	"AluJr,(A)n,AluSz"		INSR		c19p7239802FS	AGTTAATCTCTCATCTCCCAGTTG	c19p7239802ES	CTGTGATCCTAGTTTCTCAGAAGG
chr19	9108608	9108969	9247608	9247969	+	57	361	7	L1PA2	"COLO2T,COLO2N"	98	110	"L1PA2,AluSq2"				c19p9108788FS	ATTTTTCATAGAGACAGGGTTTCC	c19p9108788ES	CAGGACCTGGTATTTCTGTTAGAG
chr19	15034543	15034898	15173543	15173898	-	771	355	12	L1PA3	"COLO2T,COLO2N"	355	380	"L1PA3,AluJo"				c19p15034720FS	GTTTAGCCTGGAAGTTTCATATTC	c19p15034720ES	TTGGAGGAGTGATCTAAGTAGAGG
chr19	15686181	15686628	15825181	15825628	+	7266	447	26	L1HS	"COLO2T,COLO2N"	10417	448	"FLAM_C,L1HS,(A)n,MSTA"				c19p15686404FS	AATCTCATGTTGAATTGTAATCCC	c19p15686404ES	TCATTCTCAGTAAACTATCGCAAG
chr19	15756695	15757007	15895695	15896007	-	84	312	3	L1PA4	"COLO2T,COLO2N"	23	65	"AluSx,L1PA4"				c19p15756851FS	ATTGAGGTTCTCGAATCTAAACTG	c19p15756851ES	TAAAACATGCTGCTATGAAGACAC
chr19	20784734	20785436	20992894	20993596	+	13	702	3	noL1	"COLO2T,COLO2N"	23	703	L1PA3				c19p20785085FS	TGTGATGTTAGGGTGTTAATTTTG	c19p20785085ES	ACATAGGCTCAAAATAAAAGGATG
chr19	22866367	22866798	23074527	23074958	-	28	431	5	L1PA3	"COLO2T,COLO2N"	33	124	"(CA)n,AluY,L1MC4a"				c19p22866582FS	GAAACCCCGTCTCTACTAAAAATAC	c19p22866582ES	AATGCTAAATGACAAGTTAATGGG
chr19	23713055	23713610	23921215	23921770	+	11	555	5	noL1	"COLO2T,COLO2N"	5	65	"L1MA8,AluY"				c19p23713332FS	TAATTCTGTATTTTGGCAATTGTG	c19p23713332ES	CAAAGAATCTGAGACAATCAACAG
chr19	24380436	24380841	24588596	24589001	-	10	405	2	L1PA3	"COLO2T,COLO2N"	1	65	"L1PA3,ALR/Alpha"				c19p24380638FS	GTACAGTCAGCAAGTGGATAATTG	c19p24380638ES	AACTAGAAATACCATTTGACCCAG
chr19	32424043	32424555	27732203	27732715	+	2000	512	3	noL1	"COLO2T,COLO2N"	882	562	ALR/Alpha	"Alu:Hormozdiari,Iskow,Witherspoon"			c19p32424299FS	TCTGTCTAAAGGAAGGTTGAACTC	c19p32424299ES	TCATAGAGCAGTTAGGAAACACTC
chr19	32560401	32560945	27868561	27869105	+	132	544	10	noL1	"COLO2T,COLO2N"	188	544	ALR/Alpha	LINE:Iskow			c19p32560673FS	TCACAAAGTATTTTCTCACAATGC	c19p32560673ES	AGACAATCTTTTGGTAGAATTTGC
chr19	32648872	32649444	27957032	27957604	+	69	572	7	L1PA3	"COLO2T,COLO2N"	179	78	"L1PA3,L1PA4"				c19p32649158FS	CTTGTTTATTAGTCTTGCTAGCGG	c19p32649158ES	TAGACTGGATTAAGAAAATGTGGC
chr19	33236575	33236888	28544735	28545048	+	15	313	3	L1PA12	"COLO2T,COLO2N"	11	142	"L1PA2,L1PA7"				c19p33236731FS	CTTCTTTTAATTTTGACGTTAGGG	c19p33236731ES	TCATTCTCAGTAAACTATCGCAAG
chr19	33276192	33276530	28584352	28584690	+	29	338	3	L1PA4	"COLO2T,COLO2N"	13	307	"L1M,MER41G,L1PA4"				c19p33276361FS	AATTGTTTCTTGATATTTTCCTGC	c19p33276361ES	TAATGAGTTCATGTCCTTTGTAGG
chr19	33945657	33946016	29253817	29254176	+	30	359	7	L1PA2	"COLO2T,COLO2N"	34	305	"L1PA2,L1PA15"				c19p33945836FS	TTCTGATTCTAACTTTCACCCTTC	c19p33945836ES	ATGATGAGTTCATGTCCTTTGTAG
chr19	34392942	34393140	29701102	29701300	-	29	198	3	L1PA3	COLO2T	0	0	L1PA3		UQCRFS1		c19p34393041FS	AGAAAACTCAATAAAATGGCTTTG	c19p34393041ES	TCATTCTAAGTAAACTGTCGCAAG
chr19	35323457	35323946	30631617	30632106	-	128757	489	65	L1HS	"COLO2T,COLO2N"	128755	494	"L1HS,AluSq2,(T)n"				c19p35323701FS	CACCTTATTTATAAAGCTTGCTGG	c19p35323701ES	TCATTCTCAGTAAACTATCGCAAG
chr19	36837236	36837753	32145396	32145913	+	456	517	18	L1HS	"COLO2T,COLO2N"	532	517	"L1PA8,L1HS,L1ME5"				c19p36837494FS	AACCTTTTGTTGACTTTCTCTCAC	c19p36837494ES	TCATTCTCAGTAAACTATCGCAAG
chr19	37769965	37770298	33078125	33078458	-	589	333	8	L1PA3	"COLO2T,COLO2N"	677	293	L1PA3		"PDCD5,TFAR19"	"PDCD5.L,TFAR19.L"	c19p37770131FS	CAACAACAGTGAAAGTAAGTGTCC	c19p37770131ES	TCATTCTCAGTAAACTATCGCAAG
chr19	39056847	39057461	34365007	34365621	+	21	614	2	noL1	COLO2T	0	0	AluJo				c19p39057154FS	TCTTTCCTTTTTATTTTGTTTTGG	c19p39057154ES	ACCAAAAATACAAAAATTAGCTGG
chr19	39798184	39798716	35106344	35106876	-	16	532	2	noL1	"COLO2T,COLO2N"	25	533	"L1MA9,L1PA3,L1MA5"		AX748165		c19p39798450FS	TCTCACTGAATTAGGAGAAGTTCC	c19p39798450ES	CCCAAAGGACTATAAATTATGCTG
chr19	41424183	41424541	36732343	36732701	+	25	358	3	noL1	"COLO2T,COLO2N"	20	357	"AluSq2,AluSq"				c19p41424362FS	TCTAAATATTTTCTCCCATTCTGC	c19p41424362ES	GAATGCCAAACTTATTTAATGGAG
chr19	46166423	46166703	41474583	41474863	+	372	280	8	L1PA4	"COLO2T,COLO2N"	270	285	L1P2		CYP2A7		c19p46166563FS	CTCGAAGAAAACAGAATTTAAACC	c19p46166563ES	CTCACTTATAGGTGGGAATTGAAC
chr19	46195834	46196034	41503994	41504194	-	17	200	3	L1PA3	COLO2T	0	0	AluJr		"CYP2B6,CYP2A7"		c19p46195934FS	ATTTAGATTTTTCAGGGGAATGAC	c19p46195934ES	TAATGCTAGATGACGAGTTAGTGG
chr19	46236626	46237134	41544786	41545294	+	23	508	5	L1PA6	"COLO2T,COLO2N"	10	504	"(GAAA)n,AluSx,L1PA6"				c19p46236880FS	ATTTCAGCTGTACTTTTCAACTCC	c19p46236880ES	AATAGCAAAGACTTAGAACCAACC
chr19	46605686	46606074	41913846	41914234	-	47	388	2	noL1	"COLO2T,COLO2N"	53	388	"AluJb,MIRb"		"DKFZp313C0640,BCKDHA"		c19p46605880FS	AATACACACACTGAACATGCTACC	c19p46605880ES	AGACCTGTGAGAAGCCTATAAATG
chr19	48248545	48248950	43556705	43557110	+	29188	405	31	L1HS	"COLO2T,COLO2N"	13953	513	"AluJb,L1HS,(A)n"		"PSG6,PSG2"		c19p48248747FS	TCCTGACTCTGGACAATCTAAATC	c19p48248747ES	GATGAGTTCATATCCTTTGTAGGG
chr19	52025286	52025742	47333446	47333902	-	13	456	6	noL1	"COLO2T,COLO2N"	26	456	"(CA)n,AluYk4,(T)n"				c19p52025514FS	TTGTCCTTGAGTAGCTGTAAACAC	c19p52025514ES	TATAAAAGAAATGGATGAAGGGAG
chr19	55366567	55367205	50674755	50675393	-	17	638	2	noL1	"COLO2T,COLO2N"	15	644	"AluSz6,MIR,AluSx,L1MB7"				c19p55366886FS	AAAAATACAAAAATTAGCTGGGTG	c19p55366886ES	ATGTGGTAAAACCCCATTTCTAC
chr19	56651254	56651447	51959442	51959635	+	39	193	4	L1PA4	"COLO2T,COLO2N"	23	124	"(TAA)n,(CAGAGA)n,L1PA4,L1MC"		SIGLEC8		c19p56651350FS	GGTTTGACATCGTAGTGAGACTG	c19p56651350ES	CAAATGTCCAACAATGATAGACTG
chr19	56867456	56867814	52175644	52176002	-	353	358	14	L1HS	"COLO2T,COLO2N"	342	367	"MSTB1,L1HS"	LINE:dbRIP			c19p56867635FS	TTTTATCTCTTGAGAAGAAAGATCG	c19p56867635ES	GATGAGTTCATATCCTTTGTAGGG
chr19	58115545	58116022	53423733	53424210	+	64	477	11	noL1	"COLO2T,COLO2N"	42	478	"MER4E1,SVA_E,(A)n"				c19p58115783FS	AGTCACATTTGCTTTTCTCTTTTC	c19p58115783ES	ATCCTGTTGATCTGTGACCTTATC
chr19	59783051	59783530	55091239	55091718	-	145196	479	68	L1HS	"COLO2T,COLO2N"	200104	479	"L1HS,L1PA6"		"LILRA2,LIR-7"		c19p59783290FS	GAAGGGTAGTTTGAAGTCAGGTAG	c19p59783290ES	TGGGAGATATACCTAATGCTAGATG
chr19	59878376	59878769	55186564	55186957	-	20	393	2	noL1	"COLO2T,COLO2N"	28	393	"HUERS-P3-int,AluY"				c19p59878572FS	CAAAAATTGACACAATAGCAGAAG	c19p59878572ES	TTTGTTTAAAACTTTACTTGCTGG
chr19	60117210	60117461	55425398	55425649	-	13	251	4	L1PA4	"COLO2T,COLO2N"	14	71	"AluSx,(T)n,L1PA4"				c19p60117335FS	ACACCTGTAATCCCAACACTTTG	c19p60117335ES	CTAAAAATACAAAAATTAGCCGGG
chr19	61031613	61031730	56339801	56339918	+	333	117	4	L1PA2	"COLO2T,COLO2N"	432	262			"PYPAF6,NLRP11"		c19p61031671FS	ATACATCTGTTTTTATTAAGCCCC	c19p61031671ES	CAAATGTCCAACAATGATAGACTG
chr19	63278536	63279095	58586724	58587283	+	491	559	13	noL1	"COLO2T,COLO2N"	308	560	"(CA)n,AluJo,AluSz,MIRc"				c19p63278815FS	TGTAGTCTCAGCTACTAAGGAGGC	c19p63278815ES	AACATGGTGAAATCCTGTCTCTAC
chr2	978438	978817	988438	988817	-	27160	379	24	L1HS	"COLO2T,COLO2N"	18366	379	"L1HS,L1MB7"		SNTG2		c2p978627FS	GAATAAATTACCATCAACTGACCC	c2p978627ES	ATGTGCTACAATGGAATGTATCTG
chr2	1057288	1057625	1067288	1067625	+	10	337	3	L1PA2	"COLO2T,COLO2N"	24	71	"Tigger1,L1PA2"		SNTG2		c2p1057456FS	CCAATAGAAGGCTGTTTCATCTAC	c2p1057456ES	TCATTCTCAGTAAACTATCGCAAG
chr2	1166939	1167233	1176939	1177233	+	89	294	3	L1PA3	"COLO2T,COLO2N"	32	294			SNTG2		c2p1167086FS	TAAACTACGTGAACCATACTCAGG	c2p1167086ES	AAAAAGCAAACACCACATATTCTC
chr2	1231567	1231747	1249020	1249200	+	27	180	3	L1PA3	"COLO2T,COLO2N"	48	65	L1PA3		SNTG2		c2p1231657FS	TGTAATTTACTCCTCCAGTGTCTG	c2p1231657ES	AAGATATGGTCATCATTGTTTGTG
chr2	2242135	2242751	2263128	2263744	+	1001	616	13	L1HS	"COLO2T,COLO2N"	3150	616	"L1HS,MIRc"	LINE:dbRIP	MYT1L		c2p2242443FS	TCTCTCTGTAATGTAATCTCCGTG	c2p2242443ES	TAATGCTAGATGACACGTTAGTGG
chr2	9924644	9925130	10007193	10007679	+	47	486	5	L1PA4	"COLO2T,COLO2N"	22	217	"L2a,MamRep605,L1PA4"		TAF1B		c2p9924887FS	AAACAACAGAGTGTCCCTAAAAAG	c2p9924887ES	TCATTCTGAGCAAACTATCACAAG
chr2	11053187	11053727	11135736	11136276	-	698135	540	103	L1HS	"COLO2T,COLO2N"	547228	735	L1HS				c2p11053457FS	CTAGAGTCTTGATCTGCCATTACC	c2p11053457ES	GAGGGATAGCATTGGGAGATATAC
chr2	11124092	11124290	11206641	11206839	-	11	198	2	L1PA4	"COLO2T,COLO2N"	1	65	L1PA4				c2p11124191FS	GAGAAATGTGGACAGAGGAAATAC	c2p11124191ES	CAAATGTCCAACAATGATAGACTG
chr2	11938927	11939325	12021476	12021874	-	53	398	4	L1PA4	"COLO2T,COLO2N"	91	134	L1PA4				c2p11939126FS	TTTAATATTCACAACAACCCTGTG	c2p11939126ES	ACTAGAAATACCATTTGATCCAGC
chr2	12403372	12403801	12485921	12486350	-	9620	429	38	L1HS	"COLO2T,COLO2N"	20131	427	"L1HS,AT_rich"		AK001558		c2p12403586FS	AAAAGTATGAAAAGTGGAGTGACG	c2p12403586ES	TCATTCTCAGTAAACTATCGCAAG
chr2	12550457	12550584	12633006	12633133	+	238	127	8	L1PA2	"COLO2T,COLO2N"	258	312	L1PA2		AK001558		c2p12550520FS	CGACTCACACAAGAGATAAGAATG	c2p12550520ES	TCACTCTGATGGTAGTTTCTTTTG
chr2	12846790	12847081	12929339	12929630	-	1697	291	7	L1PA4	"COLO2T,COLO2N"	1075	288	L1PA4				c2p12846935FS	TAAAATGCCTCATGTTGTCATATC	c2p12846935ES	GATGAGTTAATGTCCTTTGTAGGG
chr2	12985335	12985778	13067884	13068327	+	2473	443	15	L1HS	"COLO2T,COLO2N"	674	454	"L1HS,AT_rich,(A)n,L2c,MIR3"				c2p12985556FS	TCCACTGTCTTGGTTCTACTAATG	c2p12985556ES	TCATTCTCAGTAAACTATCGCAAG
chr2	13100209	13101004	13182758	13183553	+	13209	795	31	noL1	"COLO2T,COLO2N"	22810	299	L1PA8A	"LINE:Ewing,Iskow"			c2p13100606FS	ATTTCTTTCAGTTCTTCTCTGAGC	c2p13100606ES	AAAACAGACTTTAAGCCAACTACG
chr2	13625588	13625870	13708137	13708419	+	36	282	7	L1PA2	"COLO2T,COLO2N"	48	297	"L1MB2,L1PA2"				c2p13625729FS	TAATAGTAGCCATCCTAATGGGTG	c2p13625729ES	TCATTCTCAGTAAACTATCGCAAG
chr2	13940774	13940878	14023323	14023427	+	23	104	6	L1PA3	"COLO2T,COLO2N"	34	164	"L1PA3,L1MA3"				c2p13940826FS	TTCTTCTGTCCTAGAACACCTTTC	c2p13940826ES	CAAATGTCCAACAATGATAGACTG
chr2	14296434	14296581	14378983	14379130	-	78	147	8	L1PA4	"COLO2T,COLO2N"	117	145	"L1PA4,MSTB"		BC035112		c2p14296507FS	AAGGTATATGATATGGTTTGGGTC	c2p14296507ES	TTTTTCATGTCCTTCCTAGTTTTC
chr2	14720766	14721033	14803315	14803582	+	20	267	2	L1PA2	"COLO2T,COLO2N"	28	306					c2p14720899FS	GTGAATATTTAAACAGTCCCCAAC	c2p14720899ES	TCATTCTCAGTAAACTATCGCAAG
chr2	15286891	15287382	15369440	15369931	+	320	491	2	noL1	"COLO2T,COLO2N"	48	65	"AluSq2,AluSx1,L1MA6"		"NBAS,NAG"		c2p15287136FS	TGTCTGTTTTGACAATAACCTCAC	c2p15287136ES	CTAAAAATACAAAAATTATCCGGG
chr2	15461442	15462139	15543991	15544688	-	82	697	9	noL1	"COLO2T,COLO2N"	62	685	"MIR,AluSx1,(TG)n,FLAM_C"		"NBAS,NAG"		c2p15461790FS	AACTGGTAAAATAGGAACAAGCTG	c2p15461790ES	AAAATTAGCCAGATGTGATTGTG
chr2	16439791	16439995	16576310	16576514	-	22	204	4	noL1	COLO2T	0	0	(CA)n				c2p16439893FS	CTTCACATCACTTAAAGACACACG	c2p16439893ES	CTATGGTGTGTGAGGATCTCTATG
chr2	16638306	16638485	16774825	16775004	-	1567	179	8	L1HS	"COLO2T,COLO2N"	797	118	L1HS		FAM49A		c2p16638395FS	GATATTCAGGGAATCCAATAAATG	c2p16638395ES	GATGAGTTCATATCCTTTGTAGGG
chr2	16920476	16920771	17056995	17057290	-	274	295	6	L1PA3	"COLO2T,COLO2N"	227	297	"L1PA3,(TTA)n,LTR78"				c2p16920623FS	ATGTTTACAGCTACTTCCCTTCTC	c2p16920623ES	AACACTGCATGTTCTCACTCATAG
chr2	23044159	23044519	23190654	23191014	-	55546	360	47	noL1	"COLO2T,COLO2N"	78298	327	"L2a,MER45A,THE1C"	"LINE:Beck,dbRIP,Ewing,Iskow,Stewart"			c2p23044339FS	TTTTGGGAAATAGGTAAATCTCAC	c2p23044339ES	ATCTCATCTTGAATTGTAGTTCCC
chr2	25304523	25304635	25451019	25451131	+	49	112	7	noL1	"COLO2T,COLO2N"	57	102	L1M4b				c2p25304579FS	TGTTAAATTAAGTCTGCTGTCTGG	c2p25304579ES	GCACAAAAACAGTCCATTTATTC
chr2	26130374	26130474	26276870	26276970	-	84	100	7	noL1	"COLO2T,COLO2N"	64	102	"T-rich,AluSx1"		RAB10		c2p26130424FS	GTGGGAGTATTGTTCATCTACCTC	c2p26130424ES	CCCACATTAAAATATGCAAAAAG
chr2	26715290	26715631	26861786	26862127	-	21	341	4	L1PA7	"COLO2T,COLO2N"	60	71	"AluSx1,L1PA7"		CIB4		c2p26715460FS	AACATGGTGAAACCCTATCTCTAC	c2p26715460ES	ACATAACTCCAAATGACCCATATC
chr2	29225768	29226116	29372264	29372612	-	22	348	3	noL1	"COLO2T,COLO2N"	9	350	HAL1		"DKFZp761O0610,CLIP4"		c2p29225942FS	TACCAACTACTATCCTGAGCTTCC	c2p29225942ES	AAAGACGAAAAGGAGAGAAAATG
chr2	31029081	31029368	31175577	31175864	+	14	287	5	L1PA2	"COLO2T,COLO2N"	16	70	"L1ME4a,L1PA2"		GALNT14		c2p31029224FS	AAGAAATATGGAAAACATTTGAGC	c2p31029224ES	CAAATGTCCAACAATGATAGACTG
chr2	31655692	31656060	31802188	31802556	+	35344	368	33	L1HS	"COLO2T,COLO2N"	40961	424	"L2a,L1HS,(A)n"		SRD5A2		c2p31655876FS	GCTAAGACAGAGAATAAGACGGAG	c2p31655876ES	TCATTCTCAGTAAACTATCGCAAG
chr2	32945284	32945699	33091780	33092195	-	23651	415	191	L1PA16	"COLO2T,COLO2N"	10041	412	"(TCTCCC)n,(T)n"	Alu:Hormozdiari	"AK095182,BC040883"		c2p32945491FS	no primer	c2p32945491ES	no primer
chr2	33830699	33831252	33977195	33977748	-	25	553	3	noL1	"COLO2T,COLO2N"	31	65	L1MDa				c2p33830975FS	ATGGAAACCTTAGCTCTCTTTATG	c2p33830975ES	CAAGAGGATAGAGGAAAGAATCAG
chr2	34655025	34655505	34801521	34802001	+	24058	480	30	L1HS	"COLO2T,COLO2N"	14955	467	"MER110A,L1HS"	LINE:dbRIP			c2p34655265FS	AGGACTGGCTGAGAATAATGATAG	c2p34655265ES	TCATTCTCAGTAAACTATCGCAAG
chr2	34898640	34898909	35045136	35045405	+	40531	269	50	L1HS	"COLO2T,COLO2N"	66320	259	"L1HS,THE1D"				c2p34898774FS	TTTTCAGGAGGCAACTTAATTATC	c2p34898774ES	TCATTCTCAGTAAACTATCGCAAG
chr2	35732838	35732981	35879334	35879477	+	1387	143	4	noL1	"COLO2T,COLO2N"	449	66	ERV3-16A3_I-int	"LINE:Ewing,Iskow,Stewart"			c2p35732909FS	ATTTTCAGGATTTTGATCTTTCAG	c2p35732909ES	TGTAAGTATTCCATGGTCTGTGTC
chr2	35879215	35879536	36025711	36026032	+	21	321	2	L1PA4	"COLO2T,COLO2N"	17	249	"MER5A1,L1PA4"				c2p35879375FS	CTCTACAATCATGTCAGCCTAGTG	c2p35879375ES	AATGATCAGTTCATGTCTTGTAGG
chr2	36192847	36193228	36339343	36339724	-	229	381	15	L1HS	"COLO2T,COLO2N"	205	381	"L1ME4a,L4,L1HS"				c2p36193037FS	AAGTACTTTGTTTCTTACCATCGC	c2p36193037ES	TCATTCTCAGTAAACTATCGCAAG
chr2	36234862	36235014	36381358	36381510	+	350	152	4	L1PA11	"COLO2T,COLO2N"	621	177	L2c	"LINE:Ewing,Stewart"			c2p36234938FS	TTTACCTATGTAACAAACCTGCAC	c2p36234938ES	AACTAATTAGGTCTTGACCAGCAC
chr2	36279009	36279397	36425505	36425893	-	1101	388	18	L1PA4	"COLO2T,COLO2N"	1287	388	"L3,L1PA4"				c2p36279203FS	TAGCAATTGGAAATGAATACAATG	c2p36279203ES	TCTAGGTCTCAGTCTTCTTCCATC
chr2	36423378	36423784	36569874	36570280	-	1877	406	16	L1PA16	"COLO2T,COLO2N"	575	331	"AluYf4,L1PA16"	"LINE:Beck,dbRIP,Ewing,Iskow"			c2p36423581FS	TTTTAGTAGAGACAGGGTTTCACC	c2p36423581ES	AAACTGGCCTAAAGTGATAAATTG
chr2	37282876	37283352	37429372	37429848	+	92	476	4	noL1	"COLO2T,COLO2N"	73	479	AluSz		"CEBPZ,BC017652,AK001814"	"AK001814.L,BC017652.L"	c2p37283114FS	TTTGTATCTGCTGAAGAGGTAAGG	c2p37283114ES	TCAAAAAGAAATGACTAAGGAAGG
chr2	38142886	38143194	38289382	38289690	-	63	308	7	L1PA4	"COLO2T,COLO2N"	139	320	L1MD2		FAM82A1		c2p38143040FS	ATGATCCTTGTTCACATCTCTAGG	c2p38143040ES	GAGGGATAGCATTTGGAGATATAC
chr2	40024657	40025115	40171153	40171611	-	10	458	3	noL1	"COLO2T,COLO2N"	41	458	AluSz		BC043380		c2p40024886FS	AGGAATAGGAGAGTTGTGAGACAC	c2p40024886ES	CAGAAGGCAATTCTGATAATACTG
chr2	40313118	40313307	40459614	40459803	-	78	189	7	L1PA2	"COLO2T,COLO2N"	131	111	L1PA2		"SLC8A1,BC043380"		c2p40313212FS	CTGAACATTTCAAAAAGACATTTG	c2p40313212ES	TTACTGCAGCATTATTCACGATAG
chr2	41630421	41630704	41776917	41777200	-	3961	283	14	L1HS	"COLO2T,COLO2N"	3145	281	"L1HS,L1MB7"				c2p41630562FS	AACACTCTGCTATTTCATGGATTC	c2p41630562ES	ATGATAGCCTGGATTAAGAAAATG
chr2	41904895	41905311	42051391	42051807	+	3459	416	20	noL1	"COLO2T,COLO2N"	2472	458	"L1MD1,AluSz"	"LINE:Beck,Ewing,Iskow"			c2p41905103FS	TAGAGGAACTGTATTCCAGAGTGG	c2p41905103ES	TAAAACTTGGGAGAAAATCTTCAG
chr2	43395018	43395298	43541514	43541794	+	15	280	2	noL1	"COLO2T,COLO2N"	19	281			"THADA,KIAA1767"		c2p43395158FS	CTTTTATCATAGTGCTTCCCAATC	c2p43395158ES	TTATTATAGCCCCCTACAAACAAG
chr2	45140045	45140272	45286541	45286768	-	93	227	14	L1PA2	"COLO2T,COLO2N"	203	77	"L1PA2,MIRb"				c2p45140158FS	GGAAGAATTAGTTCATTTCTGGAG	c2p45140158ES	TCATTCTCAGTAAACTATCGCAAG
chr2	47793829	47794070	47940325	47940566	+	27	241	3	noL1	"COLO2T,COLO2N"	66	241	"AluJb,AluSq2"				c2p47793949FS	AGCTATTTTAAAGTCCTTGACTGC	c2p47793949ES	ACACGCCTATAATCTCAGTGACTC
chr2	52019549	52019768	52166045	52166264	-	9476	219	43	L1HS	"COLO2T,COLO2N"	5815	300	"L1HS,(T)n"				c2p52019658FS	no primer	c2p52019658ES	no primer
chr2	53313514	53313872	53460010	53460368	+	544	358	6	noL1	"COLO2T,COLO2N"	732	306	MER58A	"LINE:Ewing,Iskow,Stewart"			c2p53313693FS	CTTATTTTGTAGCAGACAATGTGG	c2p53313693ES	ATTAAACACTTTTCCTACCTTCCC
chr2	53389778	53389940	53536274	53536436	+	88	162	6	L1PA2	"COLO2T,COLO2N"	141	163	"L1MA8,L1PA2"				c2p53389859FS	TTTCTTGCTATTGAGTTGTTTGAG	c2p53389859ES	CTAGGATTGCTGTAACACAAACTG
chr2	53452070	53452453	53598566	53598949	+	18	383	6	noL1	"COLO2T,COLO2N"	48	383	"AluSx1,(A)n"				c2p53452261FS	AAGCAGTAAAAGTAAAGAAGGCTG	c2p53452261ES	CAAACCCCTGTACCTATAATTCAC
chr2	53481442	53481954	53627938	53628450	+	12966	512	34	L1HS	"COLO2T,COLO2N"	9670	512	"L1HS,AT_rich"	LINE:dbRIP			c2p53481698FS	ATCTAAGGCTTCTTAGAGGGTAGC	c2p53481698ES	ACACCGCATATTCTCACTCATAG
chr2	53673635	53673743	53820131	53820239	+	28	108	3	L1PA3	"COLO2T,COLO2N"	24	441	L1PA3				c2p53673689FS	TGTTACATAACGAACAGAATGTGG	c2p53673689ES	CAAATGTCCAACAATGATAGACTG
chr2	56740780	56741275	56887276	56887771	-	21	495	6	L1PA3	"COLO2T,COLO2N"	27	228	L1PA3				c2p56741027FS	CTTTATTCTGCAGTTATGTCCATC	c2p56741027ES	TACCCAAAGGACTATAAATCATGC
chr2	56873313	56873507	57019809	57020003	+	15	194	3	L1PA3	"COLO2T,COLO2N"	7	253	"L2a,L1PA3"				c2p56873410FS	ATCTCCAAGACTGGTTTTAGTGTC	c2p56873410ES	GATGAGTTCATATCCTTTGTAGGG
chr2	58258384	58258487	58404880	58404983	+	12	103	3	L1PA3	"COLO2T,COLO2N"	2	65	"L1PA3,L1PA7"		FANCL		c2p58258435FS	CTTTGTACCTCTGGTAGAATTTGG	c2p58258435ES	GTTTATTGCAGCACTATTCACAAC
chr2	60170275	60170528	60316771	60317024	+	119	253	10	L1PA2	"COLO2T,COLO2N"	114	590	"L1MC3,L1PA2"				c2p60170401FS	CTGGCTTCAGTTCTAGTTCTTCTC	c2p60170401ES	AAGCCAAATATCCAACAATGATAG
chr2	60558329	60558472	60704825	60704968	+	93	143	4	L1PA7	"COLO2T,COLO2N"	71	143			BCL11A		c2p60558400FS	AAAAATACAAAAATTAGCCAGGTG	c2p60558400ES	CAACTCCCAAATTACTCTGAAGAC
chr2	60863298	60864012	61009794	61010508	-	12	714	2	noL1	"COLO2T,COLO2N"	12	714	"AluSz6,(T)n"		PAPOLG	"PAPOLG.2,PAPOLG.1,PAPOLG.12,PAPOLG.11,PAPOLG.10,PAPOLG.9"	c2p60863655FS	TTAATTTAGGTCTTGCAGTCACAG	c2p60863655ES	GTAATCCCAGCACTTTGGGAG
chr2	62060085	62060447	62206581	62206943	-	117539	362	35	L1HS	"COLO2T,COLO2N"	237352	656	"L1M1,L1HS,AluSg"		COMMD1		c2p62060266FS	AGTAAGTGAGAATAGGCCAGAATG	c2p62060266ES	GATGAGTTCATATCCTTTGTAGGG
chr2	62086988	62087336	62233484	62233832	+	309	348	10	L1PA3	"COLO2T,COLO2N"	378	300	L1PA3		COMMD1		c2p62087162FS	TTATAAAATACCCAAATTCAAGCC	c2p62087162ES	TCATTCTCAGTAAACTATCGCAAG
chr2	62711792	62712254	62858288	62858750	+	60	462	10	noL1	"COLO2T,COLO2N"	166	446	"MLT1E2-int,ERV3-16A3_I-int,SVA_C"		BC038779	BC038779.5	c2p62712023FS	TAATTCCCAGACCTTGAAACTTAG	c2p62712023ES	ATGCTGTTGATCTATGACCTTACC
chr2	63431020	63431269	63577516	63577765	+	33	249	3	L1PA6	"COLO2T,COLO2N"	28	65	L1PA6		LOC51057		c2p63431144FS	AATTGGCTATTTGCATTTAGTAGG	c2p63431144ES	ACTATTCACAACAGCAAAGACTTG
chr2	63641697	63642142	63788193	63788638	+	13	445	2	L1PA10	COLO2T	0	0	"AluSc8,L1PA10"		LOC51057		c2p63641919FS	GTCTAGCTTTTGTTCACATGTTTG	c2p63641919ES	CTAATGTAAATGACCAGTTGATGG
chr2	63783303	63783419	63929799	63929915	-	16	116	6	L1PA4	"COLO2T,COLO2N"	5	67	"AluY,L1PA4"				c2p63783361FS	AGCCAAAGACAAATATTTAAGGTG	c2p63783361ES	CAAATGTCCAACAATGATAGACTG
chr2	64112557	64112791	64259053	64259287	+	19	234	3	L1PA2	"COLO2T,COLO2N"	15	84	"L1ME3A,L1PA2"				c2p64112674FS	AATGAATACACCCATTTGTCTACC	c2p64112674ES	CATTAAGAGAATAAAAAGGCAAGC
chr2	66263777	66263889	66410273	66410385	+	11	112	2	L1PA2	"COLO2T,COLO2N"	14	279	L1PA2				c2p66263833FS	ATGTTTTTGTGTTGTTTCATTTTG	c2p66263833ES	CAAATGTCCAACAATGATAGACTG
chr2	69082071	69082330	69228567	69228826	-	19	259	2	L1PA15	"COLO2T,COLO2N"	131	259	"L1PA10,L1PA15"				c2p69082200FS	TCTTTTTGCTTAGGATTATCTTGG	c2p69082200ES	GAATTAATGCAGAAACAGAAAACC
chr2	71491720	71492157	71638212	71638649	-	16304	437	44	L1HS	"COLO2T,COLO2N"	5451	485	"L1HS,(T)n,AluSx3"		"ZNF638,NP220"		c2p71491938FS	TTTCTAAAGAGAGGGTTGGTATTG	c2p71491938ES	TCATTCTCAGTAAACTATCGCAAG
chr2	73207636	73207998	73354128	73354490	-	14534	362	54	L1HS	"COLO2T,COLO2N"	13927	296	"(CA)n,L1MC3,L1HS,AluSx1"	LINE:dbRIP			c2p73207817FS	CAGATTAACAGCACCAGTGATAAG	c2p73207817ES	GTTGAGTTCATATCCTTTGTAGGG
chr2	73560362	73560748	73706854	73707240	-	843	386	8	L1PA2	"COLO2T,COLO2N"	908	386	"L1MD1,L1PA2"		ALMS1		c2p73560555FS	AGTATGCAACCTTATTGTATTGGC	c2p73560555ES	TCATTCTCAGTAAACTATCGCAAG
chr2	73583561	73583805	73730053	73730297	-	11	244	4	L1PA3	"COLO2T,COLO2N"	6	322	"L1PA3,L1MC4"		ALMS1		c2p73583683FS	TAGTGAATTACATTGGTCCAGTTG	c2p73583683ES	ACTATTCACAACAGCAAAGACTTG
chr2	76300525	76300863	76447017	76447355	-	69	338	7	L1PA3	"COLO2T,COLO2N"	125	256	"AluYk4,AT_rich,L1PA3"				c2p76300694FS	TCTTTCAATAGGAAATCAGGACTC	c2p76300694ES	TCATTCTCAGTAAACTATCGCAAG
chr2	76379657	76380090	76526149	76526582	-	4808	433	35	L1HS	"COLO2T,COLO2N"	5793	428	"(CA)n,L1HS,L1M5"	LINE:dbRIP			c2p76379873FS	AAACAATGTTGACTAACTGCAGAG	c2p76379873ES	TCATTCTCAGTAAACTATCGCAAG
chr2	77255033	77255290	77401525	77401782	-	28	257	3	L1PA4	"COLO2T,COLO2N"	18	237	L1PA4		LRRTM4		c2p77255161FS	GACACTGGTGGTTCTTATTCTAGG	c2p77255161ES	TAACTTTGTGCTTGGCTTAAAAC
chr2	80229620	80229721	80376109	80376210	+	23	101	4	noL1	"COLO2T,COLO2N"	24	102	AluJr		CTNNA2		c2p80229670FS	GAGAAAGAAGAAACTGTAATTGGC	c2p80229670ES	TTAGGTTCCATAAGGAAAACTGTC
chr2	80312959	80313076	80459448	80459565	-	13	117	9	noL1	"COLO2T,COLO2N"	16	114	(T)n		CTNNA2		c2p80313017FS	AGTCATTTCTATCAATTCCAGGTC	c2p80313017ES	TGGTTATAGGAAGTAGAAGCCATC
chr2	80950469	80951112	81096958	81097601	-	171	643	2	noL1	"COLO2T,COLO2N"	9	65	(A)n				c2p80950790FS	AATTATTTATTCTAGGGCCCAGTG	c2p80950790ES	GTGGATGGGATAGAAATATACAGG
chr2	81687887	81688349	81834376	81834838	-	10290	462	35	L1HS	"COLO2T,COLO2N"	21230	462	"L1HS,AT_rich"				c2p81688118FS	ACTCGAGGTACACTAAATGCTTTC	c2p81688118ES	TCATTCTCAGTAAACTATCGCAAG
chr2	81951585	81952025	82098074	82098514	+	395	440	9	noL1	"COLO2T,COLO2N"	610	101	"L2b,L2,L1M5"	"LINE:Ewing,Iskow"			c2p81951805FS	TTAAAACTGTTCACTTGTTCTTGG	c2p81951805ES	TGTTTTTAATCTTGCATATGTTGC
chr2	82921701	82922195	83068190	83068684	+	123646	494	60	L1HS	"COLO2T,COLO2N"	81089	493	L1HS	LINE:dbRIP			c2p82921948FS	TTTTCCAGGTGAGAAAAATTAAAG	c2p82921948ES	TCATTCTCAGTAAACTATCGCAAG
chr2	83260441	83260877	83406930	83407366	-	28	436	2	noL1	"COLO2T,COLO2N"	27	438	"L1PA8,L1ME3"				c2p83260659FS	ATCCATATTTTATGTGCCTTCTTC	c2p83260659ES	AGGTGAAGATTTAACTCAGCAATC
chr2	84311518	84311664	84458007	84458153	+	275	146	10	L1PA3	"COLO2T,COLO2N"	246	146	"L1PA3,AT_rich"				c2p84311591FS	AAGTTTCAGGGCAAATAAGTGTAG	c2p84311591ES	GGCACTATTCACAATAGCAAAGAC
chr2	84326502	84326657	84472991	84473146	+	59	155	3	L1PA5	"COLO2T,COLO2N"	34	159	"MLT2B2,L1PA5"				c2p84326579FS	CTCTGAATGGATGTCTGTTACAAG	c2p84326579ES	GTCATCTTTAGTTGACCAAAAAGC
chr2	84530348	84531062	84676837	84677551	+	32	714	7	noL1	"COLO2T,COLO2N"	55	68	(A)n		SUCLG1	SUCLG1.7	c2p84530705FS	CAATTTCTCTTTTAGGTAGGTTGC	c2p84530705ES	GATATACATACCTGTTTGCCAGTG
chr2	84807401	84807752	84953890	84954241	+	94	351	4	L1PA4	"COLO2T,COLO2N"	78	176	"AT_rich,L1PA4"		"DNAH6,KIAA1697"		c2p84807576FS	TGGTTTCATTATATGTCATTTTGC	c2p84807576ES	AACACTGCATGTTCTCACTCATAG
chr2	84881862	84881978	85028351	85028467	+	15	116	2	L1PA2	"COLO2T,COLO2N"	1	65	"L1P4d,L1PA2"		KIAA1697		c2p84881920FS	AGCCTCTCAAAGTGTTAGGATTAC	c2p84881920ES	CAAATGTCCAACAATGATAGACTG
chr2	85565497	85565793	85711986	85712282	+	70	296	3	noL1	"COLO2T,COLO2N"	34	290	"L1PA2,MER57A-int"				c2p85565645FS	TTTTTAGTTTTATTAGAGGTGGGG	c2p85565645ES	GGACTGTAAACTAGTTCAACCATTG
chr2	86192671	86193054	86339160	86339543	-	17	383	3	noL1	"COLO2T,COLO2N"	17	682	"AT_rich,AluSp,AluY,AluSz"		PTCD3		c2p86192862FS	TGTTTGTTTTGTTTTGTTTGAGAC	c2p86192862ES	AGACAGAGTCTCACTAACTCACCC
chr2	86735804	86735920	86882293	86882409	-	261	116	9	L1HS	"COLO2T,COLO2N"	18	893	L1HS				c2p86735862FS	TTATGGAAATCCTTTTTACAGACC	c2p86735862ES	CAAATGTCCAACAATGATAGACTG
chr2	87988024	87988562	88206909	88207447	+	663	538	16	L1HS	"COLO2T,COLO2N"	574	538	"L1HS,(A)n"	LINE:dbRIP			c2p87988293FS	GTAGGTAGAAATTGTTGCTCTTCC	c2p87988293ES	ACACCGCATATTCTCACTCATAG
chr2	88167195	88167528	88386080	88386413	-	209	333	11	L1PA2	"COLO2T,COLO2N"	179	333	L1PA2		"DKFZp451P074,SMYD1"		c2p88167361FS	ATTAAAGTGTCCCTGGGTCATAAG	c2p88167361ES	TGGCTTGTAAAATAGGGAAAATAG
chr2	88813333	88813960	89032218	89032845	+	3669	627	20	L1HS	"COLO2T,COLO2N"	2813	352	"L1HS,MIR"	LINE:dbRIP	RPIA		c2p88813646FS	TAGTTCTTACTAACCCCTGTGAGG	c2p88813646ES	TGGGAGATATACCTAATGCTAGATG
chr2	91523695	91523811	92159968	92160084	+	17	116	2	L1PA2	"COLO2T,COLO2N"	8	65					c2p91523753FS	CATGCTAGGCTTTTATAGAACTGG	c2p91523753ES	TCATTCTCAGTAAACTATCGCAAG
chr2	91638169	91638499	92274442	92274772	+	92	330	9	L1PA2	"COLO2T,COLO2N"	68	380	ALR/Alpha				c2p91638334FS	TACGAAGATATTTCCTTTTTCACC	c2p91638334ES	TCATTCTCAGTAAACTATCGCAAG
chr2	91653666	91653826	92289939	92290099	-	616	160	4	noL1	"COLO2T,COLO2N"	474	160	ALR/Alpha				c2p91653746FS	CTACGGTGAAAAAGGTGTATCTTC	c2p91653746ES	CTTGAATGCAAACATCATAAAGAC
chr2	91659637	91660346	92295910	92296619	-	10	709	4	noL1	"COLO2T,COLO2N"	4	565	ALR/Alpha				c2p91659991FS	TGTTGAACATTCCATTTGATAGAG	c2p91659991ES	TTTCTGACATTGCTTCTATCTAGC
chr2	91679967	91680278	92316240	92316551	-	12	311	2	noL1	"COLO2T,COLO2N"	59	741	ALR/Alpha				c2p91680122FS	TACATATAAAAAGCAGACAGCAGC	c2p91680122ES	GCTCTATCAAAAGAAAGCTTCAAC
chr2	95908476	95908707	96544749	96544980	+	108	231	5	noL1	"COLO2T,COLO2N"	87	231	L1MA3		DKFZp667P0924		c2p95908591FS	AGTTTGATACAGGCATACAATGTG	c2p95908591ES	TATCAGATGGCAAACAGGTATATG
chr2	96476053	96476256	97112326	97112529	+	132	203	3	L1PA3	"COLO2T,COLO2N"	85	67	"L1PA3,L1PA5"				c2p96476154FS	TCTAAGCCTACAGGTCCAATAAAC	c2p96476154ES	CAAATGTCCAACAATGATAGACTG
chr2	97249964	97250281	97886246	97886559	-	3907	317	38	L1HS	"COLO2T,COLO2N"	5928	316	"L1HS,L1MA3,(T)n"		KIAA1641		c2p97250122FS	ACCATTTCTTTGTGCTATCTTTTC	c2p97250122ES	TCATTCTCAGTAAACTATCGCAAG
chr2	97517765	97517997	98151333	98151565	+	37	232	6	noL1	"COLO2T,COLO2N"	71	257	L1MA3		ANKRD36B		c2p97517881FS	AGTTTGATACAGGCATACAATGTG	c2p97517881ES	TCAAAGCTACAATGAGGTATCATC
chr2	101487434	101487921	102121002	102121489	-	14974	487	45	L1HS	"COLO2T,COLO2N"	13003	208	"L1HS,(TTTA)n,AluSq2,MER5A"				c2p101487677FS	AAAATTAGCTGGGCATAGTGG	c2p101487677ES	CAGTCTATCATTGTTGGACATTTG
chr2	102548794	102549295	103182362	103182863	-	8989	501	26	L1HS	"COLO2T,COLO2N"	10092	441	"L1MEf,L1HS"	LINE:dbRIP			c2p102549044FS	ATCCAGAAATGTAAGTCCTCAAAC	c2p102549044ES	TCATTCTCAGTAAACTATCGCAAG
chr2	103154678	103154787	103788246	103788355	-	141	109	6	L1PA3	"COLO2T,COLO2N"	80	91	"L1PA3,(TTA)n"				c2p103154732FS	CTCTCTCCTTCAGAGTCTTACCTG	c2p103154732ES	ATAGACTGGATTAAGGAAATGTGG
chr2	103933172	103933318	104566740	104566886	+	28	146	4	L1PA3	"COLO2T,COLO2N"	19	201	MLT1D				c2p103933245FS	ATAAATAACCAGGCTTAGATGGTG	c2p103933245ES	TCATTCTCAGTAAACTATCGCAAG
chr2	105192329	105192613	105825897	105826181	-	543	284	4	noL1	"COLO2T,COLO2N"	464	69	"SVA_E,L1PA3,SVA_F"				c2p105192471FS	CACTGTGGTCTGAGAGATAGTTTG	c2p105192471ES	ATCCTGTTGATCTGTGACCTTATC
chr2	105517769	105518112	106151337	106151680	-	31	343	6	L1PA2	"COLO2T,COLO2N"	44	343	"L1P1,L1PA2,AluSz"				c2p105517940FS	TTTATGTTTGAGACAGAGTCTTGC	c2p105517940ES	TCATCATTCTCAGTAAACTATCGC
chr2	106119767	106120097	106753335	106753665	+	78	330	9	L1PA2	"COLO2T,COLO2N"	38	433	"L1PA2,(A)n"		UXS1		c2p106119932FS	GTATGAGGAGGAATCTTCAGAGG	c2p106119932ES	TCATTCTCAGTAAACTATCGCAAG
chr2	107998084	107998497	108631652	108632065	-	105026	413	33	L1HS	"COLO2T,COLO2N"	122907	416	L1HS	LINE:dbRIP			c2p107998290FS	GTGGACGTTATCTTCATTTTAACC	c2p107998290ES	CACTCTCAACTACTGTCCAACAAG
chr2	108321578	108321903	108955146	108955471	+	282	325	11	L1PA4	"COLO2T,COLO2N"	177	423	L1PA4				c2p108321740FS	TAGATTTTGACCAATCACATGAAC	c2p108321740ES	AACACCACATGTTCTCACTCATAG
chr2	108783443	108783563	109417011	109417131	-	13	120	5	L1PA2	"COLO2T,COLO2N"	1	65	"L1MEf,L1PA2"		CCDC138		c2p108783503FS	TAGGGTATATTCAAGACCTTCTGG	c2p108783503ES	GATGAGTTTATGTCCTTTGTAGGG
chr2	112977383	112977914	113260912	113261443	-	6189	531	39	L1HS	"COLO2T,COLO2N"	15256	483	"L1MC,L1HS,(TG)n,AluSx,AT_rich"		TTL		c2p112977648FS	CAGTACCTAACAAGTGCTTTGAAC	c2p112977648ES	TTCTCAGTAAACTATCGCAAGAAC
chr2	115222315	115222489	115505845	115506019	-	162	174	9	L1PA2	"COLO2T,COLO2N"	7	96	"L1PA2,(TTTA)n"		DPP10		c2p115222402FS	CCATGAAATTGAGTGTAGAGACTG	c2p115222402ES	CAAATGTCCAACAATGATAGACTG
chr2	115850542	115850880	116134072	116134410	-	23	338	2	L1PA3	"COLO2T,COLO2N"	11	338	L1PA3		DPP10		c2p115850711FS	CTTTTTAAGGAATTGCTTCTCTTG	c2p115850711ES	AACTAGAAATACCATTTGACCCAG
chr2	115962884	115963410	116246414	116246940	+	115583	526	53	L1HS	"COLO2T,COLO2N"	132027	840	"MER4D,L1HS,MER58A"	LINE:dbRIP	DPP10		c2p115963147FS	TATAAAGAAGAGGGTTCAACATCC	c2p115963147ES	TCATTCTCAGTAAACTATCGCAAG
chr2	117117481	117117607	117401011	117401137	+	1144	126	6	L1PA3	"COLO2T,COLO2N"	1410	122	"L1PA3,AT_rich"				c2p117117544FS	ATAAATTCAAAGTCAGGAAAGACG	c2p117117544ES	CAAATGTCCAACAATGATAGACTG
chr2	117337947	117338146	117621477	117621676	-	10	199	2	L1PA3	"COLO2T,COLO2N"	13	199	L1PA3				c2p117338046FS	ACTTCATCAACACTTTCTCTTTCC	c2p117338046ES	AAGAAGTAGAGAAATGTCCACCAG
chr2	117406583	117406827	117690113	117690357	+	260	244	11	L1PA3	"COLO2T,COLO2N"	205	243	L1PA3				c2p117406705FS	AGCTTCTTCCTTATTCCTATCTGG	c2p117406705ES	CAGATGTCCAACAATGATAGACTG
chr2	117486071	117486200	117769601	117769730	-	144	129	4	L1PA2	"COLO2T,COLO2N"	9	214	"L1PA2,L1ME2"				c2p117486135FS	GAATTCTAGCGGAAGTCGTAAAG	c2p117486135ES	ATGATGAGTTCATGTCCTTTGTAG
chr2	118283802	118284213	118567332	118567743	+	75	411	6	L1PA3	"COLO2T,COLO2N"	97	398	"L1PA3,L1PA8A"				c2p118284007FS	GTACCTATTGACCCATCCTCTAAG	c2p118284007ES	TCATTCTCAGTAAACTATCGCAAG
chr2	118383193	118384184	118666723	118667714	-	1007969	991	80	L1HS	"COLO2T,COLO2N"	1210036	1082	"L1P1,L1HS,AT_rich,L1PA3"				c2p118383688FS	GTTAGTAAAGCCTTCTTCAACTGC	c2p118383688ES	GTTTCCTGACTTTTTAATGATTGC
chr2	119369559	119369863	119653089	119653393	-	243	304	8	L1PA2	"COLO2T,COLO2N"	169	275	"L1PA2,AluSc"	LINE:dbRIP			c2p119369711FS	GTTGTTGTTGTTTTTGAGACAGAG	c2p119369711ES	ATGATGAGTTCATGTCCTTTGTAG
chr2	122738992	122739192	123022522	123022722	-	21	200	8	L1PA2	"COLO2T,COLO2N"	13	199	"T-rich,L1PA2"				c2p122739092FS	ATTTTGGAGTACAAGAAAATGAGC	c2p122739092ES	TCATTCTCAGTAAACTATCGCAAG
chr2	122794574	122794813	123078104	123078343	-	10	239	3	L1PA3	"COLO2T,COLO2N"	10	65	MER34A				c2p122794693FS	CTTTCATTAGTTGATTTTGAAGGG	c2p122794693ES	CTAGCAGCATTTGTCACATAAAAG
chr2	124619811	124620170	124903341	124903700	+	519	359	21	L1PA2	"COLO2T,COLO2N"	290	350	"L1PA2,(A)n,MIRc"		CNTNAP5		c2p124619990FS	AAATTTTCTCATATTCCTGTGTCC	c2p124619990ES	TCATTCTCAGTAAACTATCGCAAG
chr2	125732664	125732835	126016194	126016365	-	120	171	10	L1PA2	"COLO2T,COLO2N"	63	168	"L1PA2,CT-rich"				c2p125732749FS	TAATATTCCCTATGGAGAATGAGG	c2p125732749ES	TACTATGCAGCCATAAAAATGATG
chr2	125971546	125971772	126255076	126255302	-	12	226	2	L1PA4	"COLO2T,COLO2N"	6	65	"LTR9B,L1MB4,(TTA)n"				c2p125971659FS	GTACTTGCTTGTAGCTTTGATTTG	c2p125971659ES	AAAGTGAAAAATCTTCATGACCTC
chr2	126227006	126227656	126510536	126511186	+	16149	650	23	L1HS	"COLO2T,COLO2N"	12112	650	"L1HS,AluSx1,MIR3"	LINE:dbRIP			c2p126227331FS	AACATGGTGAAACCTCATCTCTAC	c2p126227331ES	TGGGAGATATACCTAATGCTAGATG
chr2	126642750	126643004	126926280	126926534	+	1715	254	13	L1PA3	"COLO2T,COLO2N"	2788	254	"L1PA3,L1PA7"				c2p126642877FS	CAGTATTCCATGGTGTATATGTGC	c2p126642877ES	CATAAAAATGATGAGTTCATGTCC
chr2	126651608	126652139	126935138	126935669	-	10160	531	18	L1HS	"COLO2T,COLO2N"	16398	287	"L1HS,AT_rich,MIRb"				c2p126651873FS	AATGAAGCCTCAGAAACATTACAG	c2p126651873ES	TAATGCTAGATGACACGTTAGTGG
chr2	127458475	127458577	127742005	127742107	+	11	102	2	noL1	"COLO2T,COLO2N"	4	108	L1MD1				c2p127458526FS	AATCTCATGTTGCCTTTTTATACC	c2p127458526ES	AAAATTTAAACCTTTTGCTCTGTG
chr2	128955768	128955901	129239298	129239431	+	26	133	2	noL1	"COLO2T,COLO2N"	13	193	L1MB8				c2p128955834FS	GTTTCTATTGAGATGATTGTGTGG	c2p128955834ES	AATAACCTGAATTGGAAATGAAAG
chr2	129441622	129441959	129725152	129725489	+	238	337	3	L1PA3	"COLO2T,COLO2N"	298	103	Tigger1				c2p129441790FS	GCAAGATAGATTTTTACCCTTCAC	c2p129441790ES	ACACTGCATATTCTCACTCATAGG
chr2	129884499	129885164	130168029	130168694	-	62825	665	25	L1HS	"COLO2T,COLO2N"	98566	829	"L1PA3,L1HS,L1MC4"				c2p129884831FS	ATTTCAAGAAGTCTGAACCATCTG	c2p129884831ES	GAGGGATAGCATTGGGAGATATAC
chr2	129921545	129921718	130205075	130205248	+	85	173	8	L1PA5	"COLO2T,COLO2N"	165	385	"L1PA5,L1MEc"				c2p129921631FS	AATGATTTTTCTTCTCACTTGGAG	c2p129921631ES	AGAGACTGGATTAAGAAAATGTGG
chr2	130156241	130156527	130439771	130440057	-	50	286	11	L1HS	"COLO2T,COLO2N"	2635	274	"L1HS,L1MDa,(T)n,L1PA6"				c2p130156384FS	TAATCAACTGAGTCCAACATCAAG	c2p130156384ES	GATGAGTTCATATCCTTTGTAGGG
chr2	130335709	130336234	130619239	130619764	+	2712	525	9	noL1	"COLO2T,COLO2N"	1237	553					c2p130335971FS	AAGAGAAAACAACGATTCCTACAC	c2p130335971ES	GTAATTTGCCTATGATTAAGCAGC
chr2	130569030	130569383	130852560	130852913	-	12	353	4	noL1	"COLO2T,COLO2N"	304	72	AluYc		POTEF		c2p130569206FS	AGTAAAGTTTGCAATTCCTCTGAC	c2p130569206ES	CTTTCTCAGCAGGGACTCTTC
chr2	132679269	132679758	132962799	132963288	+	11	489	3	noL1	"COLO2T,COLO2N"	47	265	"AluSp,A-rich"	LINE:Iskow	LOC554226		c2p132679513FS	AAATCTCATTTCAACAATTACCATC	c2p132679513ES	AAGTGCTGTGGGAATTTTATACAC
chr2	132716048	132716433	132999578	132999963	-	20	385	2	noL1	"COLO2T,COLO2N"	11	645	ALR/Alpha		LOC554226		c2p132716240FS	AGTTGAATTTTTCTTTTGATACGC	c2p132716240ES	GAAACCTATCCAAATATCCACTTG
chr2	132719699	132719851	133003229	133003381	-	10765	152	8	noL1	"COLO2T,COLO2N"	8013	684	ALR/Alpha		LOC554226		c2p132719775FS	AAACACTCTTTTTGGAGTATTTGG	c2p132719775ES	AAAACTGCTCTATGAAAAGGAATG
chr2	132728995	132729655	133012525	133013185	+	36	660	22	noL1	"COLO2T,COLO2N"	13	95	SSU-rRNA_Hsa		LOC554226		c2p132729325FS	ATTGGAATGAGTGCACTTTAAATC	c2p132729325ES	AGTCTCGTTCGTTATTGGAATTAG
chr2	133776786	133777165	134060316	134060695	+	1500	379	17	L1HS	"COLO2T,COLO2N"	3409	321	"(TAAA)n,L1HS"	LINE:dbRIP	NAP5	"NAP5.2,NAP5.14,NAP5.16,NAP5.5"	c2p133776975FS	GCTGACTCAGTGTAATGACAGTTC	c2p133776975ES	GATGAGTTCATATCCTTTGTAGGG
chr2	134538964	134539088	134822494	134822618	+	163	124	19	noL1	"COLO2T,COLO2N"	231	126	"SVA_D,L1PA4"				c2p134539026FS	AGCCTGTTATTGGTCTATTCAGAG	c2p134539026ES	TAGAAAGAGGTAGACATGGGAGAC
chr2	134683031	134683281	134966561	134966811	-	494074	250	59	L1HS	"COLO2T,COLO2N"	452280	413	"L1HS,(T)n"	LINE:dbRIP			c2p134683156FS	TGTGGATAAAAGCTAAGGAAGAAC	c2p134683156ES	TCATTCTCAGTAAACTATCGCAAG
chr2	135305455	135305738	135588985	135589268	+	24	283	2	L1PA2	"COLO2T,COLO2N"	3	285	L1PA2				c2p135305596FS	AATTTAAAGCAGCCTAAAAGTGAG	c2p135305596ES	TCATTCTCAGTAAACTATCGCAAG
chr2	135963512	135963702	136247042	136247232	+	55	190	2	L1PA3	"COLO2T,COLO2N"	31	86	L1M7		"DKFZP434B1727,ZRANB3"		c2p135963607FS	ACCTTTGTGTTTCTCTTTTTCTTG	c2p135963607ES	AGAAAAACAGTTATGAAGCAGATG
chr2	136872258	136872889	137155788	137156419	-	15	631	4	L1PA4	"COLO2T,COLO2N"	4	494	"MLT1K,L1PA4"				c2p136872573FS	CACAACTGAAAATGTTACCAAAAC	c2p136872573ES	ACATGTATGTTTATTGTGGCACTC
chr2	137184429	137184739	137467959	137468269	-	615	310	9	L1PA4	"COLO2T,COLO2N"	518	340	L1PA4				c2p137184584FS	ACCCCTGTTCTTAAGTAAATCCTC	c2p137184584ES	AACACTGCATGTTCTCACTCATAG
chr2	137550632	137550897	137834162	137834427	-	219	265	2	L1PA4	"COLO2T,COLO2N"	459	265	L1PA4		THSD7B		c2p137550764FS	GTTCTAGCAATAAGCGAGACTCTG	c2p137550764ES	TAGACTGGATTAAGAAAAGATGGC
chr2	137738606	137738912	138022136	138022442	-	38	306	6	L1PA3	"COLO2T,COLO2N"	55	305	"L1PA3,AT_rich"		THSD7B		c2p137738759FS	AGACAGAGTCTCGCTCTCTTG	c2p137738759ES	GATTAGTTCATGTCCTTTGTAGGG
chr2	137815009	137815553	138098539	138099083	-	20	544	5	noL1	"COLO2T,COLO2N"	1	65	L1MA7		THSD7B		c2p137815281FS	ATGTATCCCACATTTTCTGTATCC	c2p137815281ES	CTTAAATGGTATTGGGAATACTGG
chr2	137846373	137847020	138129903	138130550	-	86	647	3	L1PA3	"COLO2T,COLO2N"	162	647	"MER4D,L1PA3,(T)n"		THSD7B		c2p137846696FS	GTTAGGTAATCCCCTCAGCTATG	c2p137846696ES	CTATTCACAATAGCAGAGACTTGG
chr2	137866939	137867249	138150469	138150779	-	60	310	3	L1PA2	"COLO2T,COLO2N"	90	310	"L1PA2,L1MA4A"		THSD7B		c2p137867094FS	ATATAGCTACTCTGCTCCCTTCTG	c2p137867094ES	AACAATGAGATCACATGGACATAG
chr2	137961395	137961830	138244925	138245360	+	49424	435	21	noL1	"COLO2T,COLO2N"	56312	445	"L1P1,AluYb9,AluYa5"		THSD7B		c2p137961612FS	GAAACCCCGTCTCTACTAAAAATAC	c2p137961612ES	ATCATGAGGTCAGGAGATTGAG
chr2	139501422	139501724	139784952	139785254	-	13	302	4	L1HS	"COLO2T,COLO2N"	15	349	L1MA5				c2p139501573FS	TGGTATTTATCTTTCTTTTCCTGG	c2p139501573ES	TCATTCTCAGTAAACTATCGCAAG
chr2	140352433	140352614	140635963	140636144	-	67	181	5	L1HS	"COLO2T,COLO2N"	24	179	"L1HS,(TTTTTA)n"				c2p140352523FS	AAAAATTAGCCAGGTGTAGCG	c2p140352523ES	TCATTCTCAGTAAACTATCGCAAG
chr2	140401547	140401848	140685077	140685378	-	10	301	3	L1PA3	"COLO2T,COLO2N"	4	166	L1PA3				c2p140401697FS	GTTTTCATTTTCTGTTTCCAATTC	c2p140401697ES	TTCTCTGTAAACTAACCCAAGGAC
chr2	140486521	140487106	140770051	140770636	-	12	585	4	noL1	"COLO2T,COLO2N"	36	583	"T-rich,AluY,AluSc"				c2p140486813FS	CTTTATGTTTCCTTTTCTTTTCCC	c2p140486813ES	TAAAAATACAAAAATTAGCTGGGC
chr2	140975474	140975677	141259004	141259207	-	2783	203	11	noL1	COLO2T	0	0			LRP1B		c2p140975575FS	TGGTTTTAGAAGCTATTTCTGTCC	c2p140975575ES	ATTTGTGAATGTTTTCAACAACTG
chr2	141543614	141543899	141827144	141827429	-	1894	285	22	L1PA3	"COLO2T,COLO2N"	2689	374	L1PA3		"LRP1B,LRPDIT"		c2p141543756FS	TTTCTTTTTATCCATGTCACACAG	c2p141543756ES	AGTTTCTGGATTAAGAAAATGTGG
chr2	141694762	141695353	141978292	141978883	+	17	591	2	noL1	"COLO2T,COLO2N"	13	65	L1PA10		"LRP1B,LRPDIT"		c2p141695057FS	AATATTGACAGTGGGGTGTTAAAG	c2p141695057ES	TGTTAACGACAGACAGAGAGAAAG
chr2	142504975	142505430	142788505	142788960	-	177520	455	44	L1HS	"COLO2T,COLO2N"	151249	439	L1HS	LINE:dbRIP	"LRP1B,LRPDIT"		c2p142505202FS	GGACTCATGACCTAGAAAGAAATC	c2p142505202ES	AAGTAAAATCACACATGGACACAG
chr2	144340959	144341468	144624489	144624998	+	103695	509	62	L1HS	"COLO2T,COLO2N"	120928	509	L1HS	LINE:dbRIP			c2p144341213FS	TTTTAGCTGTATTGATGCTCTGTC	c2p144341213ES	TCATTCTCAGTAAACTATCGCAAG
chr2	145582335	145582467	145865865	145865997	-	76	132	3	noL1	"COLO2T,COLO2N"	189	68	(A)n		"U80770,BC040861"		c2p145582401FS	CTATCACCGTCTCTGGTAATAGTC	c2p145582401ES	TTCAGTATTAAGAAAAAGCCACTG
chr2	146737366	146737832	147020896	147021362	+	6093	466	26	noL1	"COLO2T,COLO2N"	3675	449	MER53	"LINE:dbRIP,Ewing,Stewart"			c2p146737599FS	CTTCACATTGCCATCTAAGTTATG	c2p146737599ES	CCCAGTGATCTTGTTTTATTATCC
chr2	148404385	148404954	148687915	148688484	-	24	569	5	L1PA2	"COLO2T,COLO2N"	20	67	"L1PA2,(T)n"		ACVR2A	ACVR2A.L	c2p148404669FS	TGATGTTTTGAAAATACAATCAGG	c2p148404669ES	TAATGCTAGATGACGAGTTAGTGG
chr2	148668737	148669166	148952267	148952696	+	9579	429	40	L1HS	"COLO2T,COLO2N"	2988	455	"L1HS,L1MEf,MER58A"		MBD5		c2p148668951FS	TTCTGATTATTAGTGTTTGCATGG	c2p148668951ES	ATGATGAGTTCATGTCCTTTGTAG
chr2	148699838	148700209	148983368	148983739	-	440	371	18	L1PA4	"COLO2T,COLO2N"	828	263	"L1MA2,L1PA4"		MBD5		c2p148700023FS	TCAAAATACTCCCTTTAGCATTTC	c2p148700023ES	GATGAGTTTATGTCCTTTGTAGGG
chr2	149849392	149849581	150141146	150141335	+	2478	189	11	L1PA4	"COLO2T,COLO2N"	2567	454	L1PA4				c2p149849486FS	ATCTTTGTTTCTGGAAATCTTTTG	c2p149849486ES	TGATTTCATGTCCTTTGTAGAGAC
chr2	150516098	150516284	150807852	150808038	+	273	186	10	L1PA2	"COLO2T,COLO2N"	111	165	"MSTD,AT_rich"				c2p150516191FS	AATCATGCCTTAAGTTTCATTCAC	c2p150516191ES	TCATTCTCAGTAAACTATCGCAAG
chr2	153254539	153254839	153546293	153546593	+	27	300	2	noL1	"COLO2T,COLO2N"	78	68	"MIRb,AluSz"		"HYPA,PRPF40A"		c2p153254689FS	CAAGTGATCTGACCGCCTTAG	c2p153254689ES	AGTAGAATAATACCAAATGGGCTG
chr2	153572179	153572575	153863933	153864329	-	40063	396	41	L1HS	"COLO2T,COLO2N"	53797	435	"L1M2,L1HS,L1ME3E"				c2p153572377FS	TAGTTTGTGCTTATGCATCTTGTC	c2p153572377ES	GATGAGTTCATATCCTTTGTAGGG
chr2	156236051	156236361	156527805	156528115	+	36523	310	30	noL1	"COLO2T,COLO2N"	16045	108	"(GAAA)n,L1M2,AluSq"	"LINE:Ewing,Iskow"			c2p156236206FS	CCACATGTAGAAGAATGAAATCAG	c2p156236206ES	ATGTCTTATTTTAAGAATGGTGGC
chr2	157093040	157093143	157384794	157384897	-	77	103	6	L1PA3	"COLO2T,COLO2N"	71	108			GPD2		c2p157093091FS	TTTCCTTAAGAAGGTTGAAGTCTG	c2p157093091ES	TCATTCTCAGTAAACTATCGCAAG
chr2	157252855	157252958	157544609	157544712	-	15	103	2	L1PA5	"COLO2T,COLO2N"	53	372	L1PA5				c2p157252906FS	ACTGAGAGTTAGGGCTTCAATATG	c2p157252906ES	TAGACTGGATTAAGAAAATGTGGC
chr2	157838376	157838629	158130130	158130383	-	10	253	3	L1PA6	"COLO2T,COLO2N"	15	68	"AluSx,L1PA6"		GALNT5		c2p157838502FS	GGTAATTATGCAACCAAATAGACC	c2p157838502ES	TAAATGATGAGTTCATGTCCTTTG
chr2	158114586	158114810	158406340	158406564	+	16	224	2	noL1	"COLO2T,COLO2N"	1	65	AluY		ACVR1C		c2p158114698FS	TTTCTTTGGTTAGGTCTACCTCTG	c2p158114698ES	ATTCTGTTCTACTTGAGGCTTCTG
chr2	158137061	158137266	158428815	158429020	+	4760	205	21	L1HS	"COLO2T,COLO2N"	6465	333	L1HS		ACVR1C		c2p158137163FS	ATCCATTTATAGCTCACTCTCTGG	c2p158137163ES	TCATTCTCAGTAAACTATCGCAAG
chr2	158871538	158871640	159163292	159163394	+	29	102	6	L1PA5	"COLO2T,COLO2N"	26	79	"L1PA5,AluY"		CCDC148		c2p158871589FS	CCTATTTTTCTATTGGGTTTTGTG	c2p158871589ES	TAGACTGGATTAAGAAAATGTGGC
chr2	159387252	159387561	159679006	159679315	+	15	309	4	noL1	"COLO2T,COLO2N"	35	624	(A)n				c2p159387406FS	ATTCAGAAGATTTCACACAAAACC	c2p159387406ES	TTAAAATGGACAGAATAAGAAGGC
chr2	160228217	160228681	160519971	160520435	-	181741	464	58	L1HS	"COLO2T,COLO2N"	142960	463	"L1HS,AluSg,AluSx"		DKFZp686H10114		c2p160228449FS	AGTAGCTGGGATTACAGGTGTG	c2p160228449ES	TCATTCTCAGTAAACTATCGCAAG
chr2	160660822	160661564	160952576	160953318	-	24	742	2	L1PA3	"COLO2T,COLO2N"	7	743	"MIR,L1MA3,MER67A,(TAAAA)n,MER57B2"				c2p160661193FS	TGTAACACAAAGAAAGGCTAAATG	c2p160661193ES	AGTTCCTCAACCAGAGTAGGTTC
chr2	160685378	160685729	160977132	160977483	+	1162815	351	21	L1HS	"COLO2T,COLO2N"	2058783	464	"L1HS,L1PA4"		ITGB6		c2p160685553FS	AATTGGAATAAATAGAGGATTCCC	c2p160685553ES	TCATTCTCAGTAAACTATCGCAAG
chr2	160701537	160701839	160993291	160993593	+	13	302	7	L1PA4	"COLO2T,COLO2N"	30	302	L1PA4		ITGB6		c2p160701688FS	AGGCTATGTTGAAATCCATCTTAC	c2p160701688ES	AACTAGAAATACCATTTGACCCAG
chr2	162090801	162091025	162382555	162382779	-	11	224	3	L1PA4	"COLO2T,COLO2N"	14	65	"AluJr,L1MDa,L1PA4"				c2p162090913FS	TTTTCCTACAAGTCCGTTAATGTC	c2p162090913ES	GACTGGATTAAGAAAATATGGCAC
chr2	164688323	164688761	164980077	164980515	+	317561	438	34	L1HS	"COLO2T,COLO2N"	500942	378	"L1HS,AT_rich"				c2p164688542FS	CCTTTTGAATTGTTTGTACAGTTG	c2p164688542ES	TCATTCTCAGTAAACTATCGCAAG
chr2	165912298	165912611	166204052	166204365	+	85	313	5	L1PA7	"COLO2T,COLO2N"	70	284	"L2c,L1PA7"		SCN2A		c2p165912454FS	AACTACTGTCCTCAAGTGAAACG	c2p165912454ES	AAACTAACACAGGAACAGAAAACC
chr2	166056662	166057500	166348416	166349254	+	1073	838	6	noL1	"COLO2T,COLO2N"	2281	135	"L2a,L1PA2"		CSRNP3		c2p166057081FS	TTCAATGACTATTTTAGATGCTGG	c2p166057081ES	AAACAAAGCTAGAAACCAGAGATG
chr2	167559201	167559452	167850955	167851206	+	47	251	7	L1HS	"COLO2T,COLO2N"	301	281	"L1HS,AT_rich"		XIRP2		c2p167559326FS	TAAAAATACAAAAATTAGCTGGGC	c2p167559326ES	TCATTCTCAGTAAACTATCGCAAG
chr2	167782001	167782108	168073755	168073862	+	41	107	4	L1PA2	"COLO2T,COLO2N"	33	70	"L1PA2,MIR3"		XIRP2		c2p167782054FS	CCCAAACATCTATATAGGGAACAC	c2p167782054ES	ATGATGAGTTCATGTCCTTTGTAG
chr2	169819352	169819809	170111106	170111563	+	14646	457	46	L1HS	"COLO2T,COLO2N"	17522	459	L1HS	LINE:dbRIP	LRP2		c2p169819580FS	CTCTGTGAATGGTTGTATAGCTTG	c2p169819580ES	TTTGTAGAGACATGGATGAAATTG
chr2	172182692	172182814	172474446	172474568	+	22	122	4	L1PA3	"COLO2T,COLO2N"	11	76					c2p172182753FS	ATCATATAAAATTTGCGACTCTCC	c2p172182753ES	AAAAACCAAACACCACATATTCTC
chr2	172894224	172894351	173185978	173186105	+	7388	127	22	L1HS	"COLO2T,COLO2N"	8274	119	"L1HS,(A)n"				c2p172894287FS	TAGACATTACTACATTGCCTTTCG	c2p172894287ES	CAAATGTCCAACAATGATAGACTG
chr2	173562103	173562359	173853857	173854113	-	512812	256	41	noL1	"COLO2T,COLO2N"	316462	411		"LINE:Ewing,Stewart"	RAPGEF4		c2p173562231FS	GAGTAGTCCTGTGATGAATGAGTG	c2p173562231ES	AGTGTGACCCTAGAAAGAACAGC
chr2	173954434	173954621	174246188	174246375	-	17	187	4	noL1	"COLO2T,COLO2N"	41	188	L1MD2				c2p173954527FS	CTTTTGGGGATCTCTCTATTTTTC	c2p173954527ES	TAAATATGTATGTGCCCATTTTTG
chr2	176054497	176054955	176346251	176346709	-	45	458	4	L1HS	"COLO2T,COLO2N"	317	172	"L1HS,MER46C"	LINE:dbRIP			c2p176054726FS	TCAAGGAAAGAAGTGTGAGTAATG	c2p176054726ES	TGGGAGATATACCTAATGCTAGATG
chr2	178231686	178232265	178523440	178524019	+	27	579	2	noL1	"COLO2T,COLO2N"	65	579	AluSq2		PDE11A		c2p178231975FS	AGAGTAGGAAAATTTTGGTAAGGG	c2p178231975ES	TTTGAGTTATGTATGATGCCATTC
chr2	178552007	178552491	178843761	178844245	+	731	484	14	L1HS	"COLO2T,COLO2N"	1423	482	"L1HS,MER65D"		PDE11A		c2p178552249FS	GAGGATATCCATTCACACTTGAG	c2p178552249ES	CCATCATTCTCAGTAAACTATTGC
chr2	179065552	179065757	179357306	179357511	+	889	205	11	L1PA3	"COLO2T,COLO2N"	1064	373	"L1PA3,L1MB3"	LINE:Ewing	PLEKHA3		c2p179065654FS	GCTACAGAGGAGGAAAATTCATAG	c2p179065654ES	ATAGGTATTGAGAAATGAAGGCTG
chr2	180518925	180519478	180810680	180811233	+	27	553	2	noL1	"COLO2T,COLO2N"	15	553	"AluJb,G-rich,AluSq"		CWC22		c2p180519201FS	TCCTATGAATAACACTCTATGGGC	c2p180519201ES	AAGCCAAATTGATTGAATAGAAAG
chr2	181196549	181197103	181488304	181488858	+	370	554	10	noL1	"COLO2T,COLO2N"	526	554	"L1PA4,MLT1B"				c2p181196826FS	TATTTCCTTTTAATGCTTTCATCC	c2p181196826ES	AAAATGAAGAGTTCATGTCCTTTG
chr2	181403336	181403510	181695091	181695265	-	118	174	7	L1PA3	"COLO2T,COLO2N"	75	180	L1PA3				c2p181403423FS	TAAATTTAACCAAAAACACTTGCC	c2p181403423ES	CAAATGTCCAACAATGATAGACTG
chr2	181406179	181406679	181697934	181698434	-	36269	500	73	L1HS	"COLO2T,COLO2N"	84882	501	"L1ME4a,L1HS"				c2p181406429FS	AAGATGTCTAACATCAAAGAAGCC	c2p181406429ES	TCATTCTCAGTAAACTATCGCAAG
chr2	183004049	183004637	183295804	183296392	+	138	588	10	L1HS	"COLO2T,COLO2N"	48	587	"L1HS,(A)n"		PDE1A		c2p183004343FS	TGGTAAGTTGTTTCTTCTTTTTCC	c2p183004343ES	AATGCTAGATGATGAGTTAGTGGG
chr2	183027866	183028223	183319621	183319978	+	12	357	2	noL1	"COLO2T,COLO2N"	5	357	L1PA4		PDE1A		c2p183028044FS	ATATGTGCCTCATTTTCTTAATCC	c2p183028044ES	GGATCCCTTCCTTACACCTTATAC
chr2	183081692	183081831	183373447	183373586	-	36	139	7	L1PA2	"COLO2T,COLO2N"	112	140	"(TTTTA)n,L1PA2,(TTTTTA)n"		PDE1A		c2p183081761FS	CAACATAGTACTGGAAGTCTTAGCC	c2p183081761ES	TAACTTATTTGGCCTTTGGTACAC
chr2	183204081	183204324	183495836	183496079	-	10	243	2	L1PA3	COLO2T	0	0	"MLT2B1,L1PA3"				c2p183204202FS	GAACACAGACATCATAAACACACC	c2p183204202ES	TATGAAAGTGCTTTGCAACTGTAG
chr2	183859867	183860151	184151622	184151906	-	14	284	7	noL1	"COLO2T,COLO2N"	35	283	(T)n				c2p183860009FS	ATATCTGAAGGGTTTATTCCTGTG	c2p183860009ES	CTCACAAGTGAATTACAGTGGAAG
chr2	185519721	185520326	185811476	185812081	-	11846	605	19	L1HS	"COLO2T,COLO2N"	9941	514	L1HS				c2p185520023FS	CATGTGAGACCTGAACTTAGTGAC	c2p185520023ES	ACACCGCATATTCTCACTCATAG
chr2	185992208	185992688	186283963	186284443	-	46	480	3	noL1	"COLO2T,COLO2N"	19	67	"L1PA2,AluY"				c2p185992448FS	ATTATTTTGACAGATTGATGGAGC	c2p185992448ES	TACCCAAAGGACTATAAATCATGC
chr2	186663713	186664185	186955468	186955940	-	464	472	9	noL1	"COLO2T,COLO2N"	480	473	"L1PA3,AT_rich"				c2p186663949FS	TAAAGAATGGAAGACAGGATAAGG	c2p186663949ES	ATTAAAAAGTCAGGAAACAACAGG
chr2	188158592	188158920	188450347	188450675	-	4923	328	16	noL1	COLO2T	0	0					c2p188158756FS	TTGAAACTTTAACAAGGAGCCTAC	c2p188158756ES	CCTAAAAACAGGTAAGACCACAAC
chr2	188578689	188578934	188870444	188870689	+	268	245	4	noL1	COLO2T	0	0	AluJr				c2p188578811FS	ACATCAAATTAAATGTTCCATGAG	c2p188578811ES	CTGACCTACATGCGTAATTTTTG
chr2	192236110	192236433	192527865	192528188	-	439	323	9	L1PA3	"COLO2T,COLO2N"	536	455	MER68				c2p192236271FS	CTAACAGCAATAATAGGGGTTGTC	c2p192236271ES	TCATTCTCAGTAAACTATCGCAAG
chr2	192469581	192469906	192761336	192761661	-	235	325	8	noL1	"COLO2T,COLO2N"	748	74	"L1M6,(T)n"				c2p192469743FS	ACTTCACCTTTTATGGAAGCTATG	c2p192469743ES	AAATGAGGAAGAGAAAACAACAAC
chr2	193785045	193785443	194076800	194077198	-	9268	398	16	L1HS	"COLO2T,COLO2N"	998	398	L1HS				c2p193785244FS	AGATACTGAGTTAGTGAAGGTGGC	c2p193785244ES	TCATTCTCAGTAAACTATCGCAAG
chr2	194170654	194170847	194462409	194462602	+	5921	193	12	L1HS	"COLO2T,COLO2N"	6083	339	"L1HS,L1MA2"				c2p194170750FS	TTTCACTATGTTTGACTAGGTTGG	c2p194170750ES	CAAATGTCCAACAATGATAGACTG
chr2	195760272	195760576	196052027	196052331	+	48318	304	20	L1HS	"COLO2T,COLO2N"	36767	210	"L1HS,MER94"	LINE:dbRIP			c2p195760424FS	ATTTAAACCACGACACTTTAGAGC	c2p195760424ES	TGTAAAGTAAAAGCAAACTGATGC
chr2	197484541	197484929	197776296	197776684	+	3686	388	23	L1HS	"COLO2T,COLO2N"	8934	442	"MIR,L1HS,AT_rich"		"PGAP1,hPGAP1"		c2p197484735FS	GTGATGTGTTACCACACTTAATCC	c2p197484735ES	GATGAGTTCATATCCTTTGTAGGG
chr2	197487604	197487746	197779359	197779501	-	10	142	2	noL1	"COLO2T,COLO2N"	4	65	"AluSz6,L2"		"PGAP1,hPGAP1"		c2p197487675FS	TTAATTCTCACTTTCCCCTTAGTG	c2p197487675ES	CTGTGTCAAATGTTACTGATAGGTC
chr2	197641283	197642161	197933038	197933916	+	54617	878	43	L1HS	"COLO2T,COLO2N"	67667	367	"L1PA5,L1HS,(A)n"		ANKRD44		c2p197641722FS	TTTTTCTCCTTGTGATAGTTTGTG	c2p197641722ES	CTAATGCTAGATGACACATTAGTGG
chr2	198260333	198260525	198552088	198552280	-	52	192	7	L1PA2	"COLO2T,COLO2N"	21	180	"L1PB2,L1PA2,(T)n"				c2p198260429FS	GTTTGTGAATATTTTCTCCCACTC	c2p198260429ES	TCATTCTCAGTAAACTATCGCAAG
chr2	198564693	198565075	198856448	198856830	-	74	382	9	L1PA3	"COLO2T,COLO2N"	167	320	"L1PA3,LTR78"		PLCL1		c2p198564884FS	CTCATTCTCTCCTTTCCTCTCTG	c2p198564884ES	GTTTTAAAAATGAATGCTGATTGG
chr2	199488155	199488462	199779910	199780217	+	15	307	4	noL1	"COLO2T,COLO2N"	151	183	MLT1G1	"LINE:Ewing,Stewart"			c2p199488308FS	TATTTGCTCCAGTTACTATTGCTG	c2p199488308ES	GACATTAAAGGGATTTACAAAAATG
chr2	199508168	199508394	199799923	199800149	+	101	226	3	L1PA2	"COLO2T,COLO2N"	23	235	"L1PA2,AluSp,(TAAAA)n"				c2p199508281FS	TCTCCAATATCTGTTCTTCCTTTC	c2p199508281ES	GAACTAGTTTACAGTCCCACCAAC
chr2	199601378	199601572	199893133	199893327	+	12	194	3	L1PA3	"COLO2T,COLO2N"	5	338	"L1PA3,L1PA6"				c2p199601475FS	AGAGGTGGAGTCTAGAGGCAGTAG	c2p199601475ES	GGAAATCATCATTCTCAGTAAACC
chr2	200274218	200274321	200565973	200566076	+	10	103	6	L1PA15	"COLO2T,COLO2N"	29	110	L1PA15				c2p200274269FS	TGTTTCTGCATTAATTCACTTAGG	c2p200274269ES	GAACCCTTCCTTTCACCATATAC
chr2	201346317	201346704	201638072	201638459	+	450	387	9	noL1	"COLO2T,COLO2N"	3	293	(CA)n	"LINE:Ewing,Iskow"	AOX2		c2p201346510FS	AAGAACCAAAGTATTACAACAGCC	c2p201346510ES	GTTCCTCTAAGTGTCACAGTGATG
chr2	203151413	203151566	203443168	203443321	+	131	153	10	noL1	"COLO2T,COLO2N"	313	153	"SVA_F,AT_rich,(A)n,L1PA17"	Alu:Hormozdiari			c2p203151489FS	AATCATAAGCCAAAATAACAAAGC	c2p203151489ES	TAGAAGGAAGTAGACATGGGAGAC
chr2	203178207	203178467	203469962	203470222	-	13	260	4	L1PA3	"COLO2T,COLO2N"	4	65	"L1PA3,AT_rich"				c2p203178337FS	TTTTCTCGTCAGTGGATGTATTAG	c2p203178337ES	TCATTCTCAGTAAACTATCGCAAG
chr2	203253378	203253499	203545133	203545254	+	20	121	2	L1PA4	"COLO2T,COLO2N"	25	205	"L1PA4,L1ME1"		FAM117B		c2p203253438FS	AATCAAATAATGTCCAAAGAGTCC	c2p203253438ES	TAGAAACCACACAAAAATTGAATG
chr2	204380725	204381341	204672480	204673096	-	12	616	4	noL1	"COLO2T,COLO2N"	16	616	"MER5B,(T)n"				c2p204381033FS	AATGTTTTAATAAGGGATTGGATG	c2p204381033ES	CTATTTTTGTGCATGTTACTGGTC
chr2	205156550	205156712	205448305	205448467	+	105	162	4	L1PA2	"COLO2T,COLO2N"	40	164	"L1PA2,MER5A"		PARD3B		c2p205156631FS	AGATTGGTAAATTCATCTCCTCTG	c2p205156631ES	CAAATGTCCAACAATGATAGACTG
chr2	205339769	205340019	205631524	205631774	-	1269	250	24	L1HS	"COLO2T,COLO2N"	95	294	"L1HS,(T)n"		PARD3B		c2p205339894FS	CATTAGCCTGAAGTTTGTCATAAG	c2p205339894ES	TCATTCTCAGTAAACTATCGCAAG
chr2	205563787	205564103	205855542	205855858	-	17	316	5	L1PA2	"COLO2T,COLO2N"	56	313	"L1PA2,L1ME3E"		PARD3B		c2p205563945FS	TACCCATTAACAAACCTTTCTTTC	c2p205563945ES	TCATTCTCAGTAAACTATCGCAAG
chr2	205855516	205855781	206147271	206147536	+	17766	265	20	noL1	"COLO2T,COLO2N"	8827	167	MER101	"LINE:Ewing,Stewart"	PARD3B		c2p205855648FS	AGAATTTGCCTGAACTAATCAATC	c2p205855648ES	GATACTGAATGAAGAGATGTTCCC
chr2	206544360	206544472	206836115	206836227	+	46	112	3	noL1	"COLO2T,COLO2N"	51	66	"AluJr4,MER57A-int"				c2p206544416FS	ACAAAAGAGAGCAGAGCTTTAGAC	c2p206544416ES	ATTTTTACCAAGTCAGTTCTCCTG
chr2	206969684	206969793	207261439	207261548	+	11	109	3	L1PA4	"COLO2T,COLO2N"	4	242					c2p206969738FS	CACAACATATAAACTGAGCTGGAG	c2p206969738ES	GATAGGGAATCTTAAATCAACTGG
chr2	207486972	207487734	207778727	207779489	+	2144	762	24	L1PA2	"COLO2T,COLO2N"	3954	764	"L1MA2,L1PA2,AluSp,L1ME2"				c2p207487353FS	CTAGCATAACCCCAATAACAATAC	c2p207487353ES	CTAGATGACAAGTTAGTGGGTGC
chr2	207846289	207846553	208138044	208138308	-	109	264	11	L1PA2	"COLO2T,COLO2N"	86	264	"L1PA2,L1PA17"				c2p207846421FS	ATTGATTGATTCTTTCCCATTAAC	c2p207846421ES	TCATTCTCAGTAAACTATCGCAAG
chr2	208137443	208138072	208429198	208429827	+	12	629	3	noL1	"COLO2T,COLO2N"	11	629	"AluJr,L1MC1"		CREB1		c2p208137757FS	GAATATACCAAGCCAAGAATGAAG	c2p208137757ES	AACATAGCAAGACCCTGTCTCTAC
chr2	208895932	208896084	209187687	209187839	-	92	152	2	L1PA3	"COLO2T,COLO2N"	112	155	"L1PA3,AT_rich,L1PA5"		PIP5K3		c2p208896008FS	GTGTTTGCATTAATTTGCTTACAG	c2p208896008ES	ACATACACACCATGGAATACTCTG
chr2	209070397	209070582	209362152	209362337	+	39	185	3	L1PA5	"COLO2T,COLO2N"	60	500	L1PA5		PTHR2		c2p209070489FS	CACTTTAATCTGCAACAAGTCATC	c2p209070489ES	AAGAGGGAAACCCATTATAATTTC
chr2	209410357	209410998	209702112	209702753	+	16	641	6	L1PA4	"COLO2T,COLO2N"	40	641	L1PA4		PTHR2		c2p209410677FS	TCTTATTACCCTGAAAGAATGGAG	c2p209410677ES	TCTAAAGACACATGCACACTTATG
chr2	209904900	209905002	210196655	210196757	-	18	102	2	L1PA3	"COLO2T,COLO2N"	13	201	MIR				c2p209904951FS	AGTGGCATTAAGTTGTAGAAAACC	c2p209904951ES	AACACCACATGTTCTCACTCATAG
chr2	211798030	211798331	212089785	212090086	+	65	301	6	noL1	"COLO2T,COLO2N"	42	301	L1PA2				c2p211798180FS	ATTTCCTTTACTTATGTGTCGTCC	c2p211798180ES	TCAGGGATCTAGAACTGGAAATAC
chr2	211904534	211904700	212196289	212196455	+	64	166	2	L1PA4	"COLO2T,COLO2N"	96	159	MER67D				c2p211904617FS	TTACTGTAGAAAGCTTGTCATTGC	c2p211904617ES	AAAAGGAAGTAGAGCATCTGAATC
chr2	212415461	212415733	212707216	212707488	+	2907	272	7	noL1	"COLO2T,COLO2N"	75	88	AT_rich	"LINE:Ewing,Iskow,Stewart"	ERBB4		c2p212415597FS	TTTGACTTCAATAGCTGTTAGTGC	c2p212415597ES	ATATCACAAAAAGGAATAAGGCTG
chr2	212456434	212456646	212748189	212748401	+	57	212	2	L1PA4	"COLO2T,COLO2N"	19	212	"AT_rich,AluSx1"		ERBB4		c2p212456540FS	ACTGTTTCAGAAGCCAGAACTTAG	c2p212456540ES	ACAATGAGAACACATAGACACAGG
chr2	213275559	213275912	213567314	213567667	+	1927	353	11	L1HS	"COLO2T,COLO2N"	543	313	L1HS				c2p213275735FS	AGGAATTGAGTGAAGTAAAGATGC	c2p213275735ES	TCATTCTCAGTAAACTATCGCAAG
chr2	213880010	213880147	214171765	214171902	-	40	137	3	L1PA3	"COLO2T,COLO2N"	8	84	L1MA3		"PF20,SPAG16"		c2p213880078FS	TAATTACTACAGTCTCCCTCCCAC	c2p213880078ES	ATACACCATGGAATACTATGCAGC
chr2	213975179	213975347	214266934	214267102	-	15	168	3	L1PA4	"COLO2T,COLO2N"	5	111	L1MEg		SPAG16		c2p213975263FS	ATTTTTCTCTTTCAGTGTTTGCTC	c2p213975263ES	TCATTCTCTGTAAACTATCGCAAG
chr2	214110292	214110612	214402047	214402367	+	20	320	6	L1PA3	"COLO2T,COLO2N"	6	154	AT_rich		SPAG16		c2p214110452FS	GAAACACTCAAGCAAACATAACTG	c2p214110452ES	TTTGTAGGTACATGGATGAAATTG
chr2	214139700	214140261	214431455	214432016	-	2461	561	31	L1HS	"COLO2T,COLO2N"	3342	535	"L1HS,(T)n,Mam_R4"		SPAG16		c2p214139980FS	GTCGACAACCTTAAATTTCATAGC	c2p214139980ES	TGGGAGATATACCTAATGCTAGATG
chr2	214604663	214604767	214896418	214896522	+	20	104	3	L1PA3	"COLO2T,COLO2N"	31	104	MSTA		SPAG16		c2p214604715FS	CTTTGAAGTTCATTTATTTGGGAG	c2p214604715ES	ATGATGAGTTCATGTCCTTTGTAG
chr2	214611331	214611498	214903086	214903253	-	168	167	4	L1PA4	"COLO2T,COLO2N"	45	167	L1MC4		SPAG16		c2p214611414FS	GACGTGCTAAATGTCTAATGTCAG	c2p214611414ES	TAATGATTTCATGTCCTTTGTAGG
chr2	214814104	214814871	215105859	215106626	+	12	767	3	noL1	"COLO2T,COLO2N"	1	65	"L1MC2,L3b,AluSz"		SPAG16	SPAG16.L	c2p214814487FS	TTTCTAGGCAAGAGAATGTTAAGC	c2p214814487ES	CAACACAGTGAAACTCTGTCTCTAC
chr2	215295730	215296015	215587485	215587770	+	177	285	14	L1PA3	"COLO2T,COLO2N"	173	286	"L1PB1,L1PA3"				c2p215295872FS	TAGAATGGGTTTTCCAATGTTATC	c2p215295872ES	ATACACCATGGAATACTATGCAGC
chr2	215769390	215769997	216061145	216061752	+	29	607	2	L1PA5	"COLO2T,COLO2N"	22	608	"L1PA5,AluY"				c2p215769693FS	TCACAAGGTCAGGAGATTGATAC	c2p215769693ES	TGAAACCCCATCTCTACTAAAAATAC
chr2	216531214	216531413	216822969	216823168	+	208	199	4	L1PA4	"COLO2T,COLO2N"	129	98	"(TAAA)n,L1PA4"		MREG		c2p216531313FS	AGAAAGCATGTTAAGAAGGGTATG	c2p216531313ES	CAAATGTCCAACAATGATAGACTG
chr2	217884690	217885101	218176445	218176856	+	39008	411	45	L1HS	"COLO2T,COLO2N"	29795	302	L1HS		AK024261		c2p217884895FS	ACTCTGTAGGGAGAAACTCAAATG	c2p217884895ES	GATGAGTTCATATCCTTTGTAGGG
chr2	220182710	220183419	220474466	220475175	-	14	709	3	noL1	"COLO2T,COLO2N"	12	76	AluY		STK11IP		c2p220183064FS	CTCTAAAAGTCAGGAAATGCAATC	c2p220183064ES	AAAAATTAGCTGGGTGTGGTG
chr2	220386122	220386512	220677878	220678268	-	3295	390	14	L1PA4	"COLO2T,COLO2N"	3870	318	"L1MA8,AT_rich,L1PA4"				c2p220386317FS	GGCTTTTTCTTGGTAGGAGTATG	c2p220386317ES	AAATGATGAGTTCATGTCCTTTG
chr2	220986212	220986469	221277968	221278225	-	58	257	3	L1PA14	"COLO2T,COLO2N"	59	288	L1MEc				c2p220986340FS	CTCTCCAACAAAGGAAAGAGTG	c2p220986340ES	ATCAGTAAACTGTGGGACAAATTC
chr2	221897815	221897922	222189571	222189678	-	11	107	5	noL1	"COLO2T,COLO2N"	4	78	"L2a,(T)n"				c2p221897868FS	AGGCCTTTTTAATCAGGGATAAG	c2p221897868ES	AGCCAGAATTCTACTTTGTTTTTG
chr2	222826589	222827176	223118345	223118932	-	11	587	2	noL1	"COLO2T,COLO2N"	5	65	"L2b,AluJo,AT_rich"		PAX3		c2p222826882FS	TAACCAGAGTCCAGAGAATAGGAC	c2p222826882ES	AAGGTGAGAAAAGACTGACAAAAC
chr2	223612599	223613255	223904355	223905011	+	3084	656	38	L1HS	"COLO2T,COLO2N"	6437	450	"L1HS,MER4C,L1M4"				c2p223612927FS	CACTCATGATAAGGTGAACATAGC	c2p223612927ES	TAATGCTAGATGACACGTTAGTGG
chr2	223750954	223751126	224042710	224042882	-	22	172	4	L1PA2	"COLO2T,COLO2N"	27	288	L2a				c2p223751040FS	TATTTAGTTTGAGTAGTTTGGGGC	c2p223751040ES	CTTTTAAAATGTAGGTGGGAATTG
chr2	225698962	225699357	225990718	225991113	-	442	395	8	L1PA8A	"COLO2T,COLO2N"	1384	395	"L1PA8A,AluSx"				c2p225699159FS	AAGTACAAATGCTGAAGGTAAAGG	c2p225699159ES	GGAATACTATGCAGCCATTAAAAG
chr2	226921742	226922210	227213498	227213966	+	12	468	4	noL1	"COLO2T,COLO2N"	14	70	"MLT1C,AluSp,MLT1K"				c2p226921976FS	CATAGTGGCTCACTCCTGTAATC	c2p226921976ES	ACTAGCATAAGCTTGGTCCTAAAC
chr2	228587768	228587883	228879524	228879639	-	19	115	3	L1PA3	"COLO2T,COLO2N"	1	65	L1PA3		SPHKAP		c2p228587825FS	AAACGACCTAGATAAAATGCTTTG	c2p228587825ES	TCATTCTCAGTAAACTATCGCAAG
chr2	228723625	228723906	229015381	229015662	-	56	281	5	L1PA3	"COLO2T,COLO2N"	47	277	"L1MEe,L1PA3,AluJb"		SPHKAP		c2p228723765FS	TTCTATTTTTCTACTTGCTGGGAG	c2p228723765ES	TCATCATTCTCAGTAAACTATCGC
chr2	230049803	230050307	230341559	230342063	+	5063	504	7	noL1	"COLO2T,COLO2N"	1364	379		"LINE:Ewing,Stewart"	DNER	DNER.6	c2p230050055FS	TCAAGATGAAACACAGACCTAATG	c2p230050055ES	TGCTTTTTAAAATAAAAGTAGCCC
chr2	232721743	232722225	233013499	233013981	-	4578	482	24	L1HS	"COLO2T,COLO2N"	11977	481	L1HS		"FLJ00327,DIS3L2"		c2p232721984FS	AACAAATTGAGACTCTTTGGACTC	c2p232721984ES	TCATTCTCAGTAAACTATCGCAAG
chr2	233132354	233132793	233424110	233424549	+	11	439	3	L1PA2	"COLO2T,COLO2N"	9	444	"AluJb,AT_rich,MIRb"		EIF4E2		c2p233132573FS	TATCTGGAAGCTTCTGTACCTGAG	c2p233132573ES	ATGGAATTATCAGCAGTTTACCAG
chr2	234091590	234091982	234426851	234427243	+	19	392	2	noL1	"COLO2T,COLO2N"	38	65	"AluSx,(A)n,L1MB7"		USP40		c2p234091786FS	CTGGACAAACATGAATTGATAGAC	c2p234091786ES	CAAAGGCACAAGAATGATATAGTG
chr2	234454035	234454676	234789296	234789937	-	21	641	3	noL1	"COLO2T,COLO2N"	16	75	"AluSq2,L1MEf,AluSx,L1ME1,L1M5"				c2p234454355FS	AAAACCGTACAAAAATTAGCTGAG	c2p234454355ES	ACTAATCAAAACTGAGATGAAGGG
chr2	236956665	236957075	237291926	237292336	-	5302	410	23	L1PA2	"COLO2T,COLO2N"	11341	410	"L1PA2,L1M3e"		IQCA1		c2p236956870FS	AGGTTTTGGAGTACTGATCTAACG	c2p236956870ES	TCATTCTCAGTAAACTATCGCAAG
chr2	239290471	239290999	239625732	239626260	-	163489	528	37	L1HS	"COLO2T,COLO2N"	150649	528	"L1HS,AT_rich"				c2p239290735FS	GTACTGTTCCTTCCACATTTTCTC	c2p239290735ES	TCATTCTCAGTAAACTATCGCAAG
chr2	239566977	239567397	239902040	239902460	-	629197	420	41	L1HS	"COLO2T,COLO2N"	724262	420	"L1HS,L1ME3B,(T)n,LTR17"				c2p239567187FS	TCAAGGTATTTGTAAAAGTCTGCC	c2p239567187ES	GACCAATCAGGTAGTAAAGAGAGC
chr20	1454727	1454884	1506727	1506884	-	24	157	4	L1PA4	"COLO2T,COLO2N"	13	66	"L1PA4,L1MC5"				c20p1454805FS	CACAAGTTTCTTTTTGTACAATGC	c20p1454805ES	AGGAATTCTATCAAACAATTGAGG
chr20	3466513	3466643	3518513	3518643	-	14	130	3	L1PA2	"COLO2T,COLO2N"	28	495	"(TTTTA)n,L1PA2,L1PA5"		ATRN		c20p3466578FS	GAAAACCACTGTGCTTCTATTAAG	c20p3466578ES	TCTTAGAACAAATCAAGACAGCAG
chr20	4066664	4067375	4118664	4119375	-	49	711	2	noL1	"COLO2T,COLO2N"	49	70	"L1PA5,AluSq2,MER53"				c20p4067019FS	CCTGTAATTCCAGCTACTCAGG	c20p4067019ES	AACCATCATTCTCAGCAAACTATC
chr20	4840644	4841332	4892644	4893332	-	20	688	2	noL1	"COLO2T,COLO2N"	3	65	"AluJr,(A)n,MIRb"		SLC23A2		c20p4840988FS	TGGAGTACAGAAGCATGATCTTAG	c20p4840988ES	TGTTCTCTTCATAAGGGAAGTAGG
chr20	5310067	5310519	5362067	5362519	+	29	452	6	L1HS	"COLO2T,COLO2N"	9	190	MSTB1				c20p5310293FS	ATGTAGTTTAACCTGAAAAGTGCC	c20p5310293ES	TAATGCTAGATGACACGTTAGTGG
chr20	5445569	5445670	5497569	5497670	+	20	101	2	L1PA4	"COLO2T,COLO2N"	7	300	"AT_rich,L1PA5,L1PA4"				c20p5445619FS	TTGAATCTATAAATTACCTTGGGC	c20p5445619ES	TATACACCGTGGAATACTATGCAG
chr20	6121699	6121997	6173699	6173997	+	2331	298	10	L1PA2	"COLO2T,COLO2N"	351	295	"L1PA2,MamRep1527"				c20p6121848FS	ATGCAATAAGAAAAGGAGTAGTGG	c20p6121848ES	TTCTCAGTAAACTGTTGCAAGAAC
chr20	6147555	6147966	6199555	6199966	+	128	411	6	L1HS	"COLO2T,COLO2N"	67	189	"L1HS,L1M5"				c20p6147760FS	CTTGTGAACAGTCCTGTATGAGTC	c20p6147760ES	TATTAATAAGAAAAGGAGGGGGAG
chr20	6897312	6897430	6949312	6949430	-	84	118	3	L1PA3	"COLO2T,COLO2N"	109	120	L1PA3				c20p6897371FS	GACGAAAATGGATAGAAACAAAAC	c20p6897371ES	TATACACCGTGGAATACTATGCAG
chr20	7044566	7044883	7096566	7096883	-	2126	317	31	L1HS	"COLO2T,COLO2N"	1744	314	"L1HS,(T)n"	LINE:dbRIP			c20p7044724FS	AAAAAGTTGTATTTCACACTTCCC	c20p7044724ES	GATGAGTTCATATCCTTTGTAGGG
chr20	7227355	7227785	7279355	7279785	-	3455	430	11	L1PA2	"COLO2T,COLO2N"	4455	272	"L1MB3,L1PA2"				c20p7227570FS	TAGGGATATTGAGCATCTTTTCAC	c20p7227570ES	TCATTCTCAGTAAACTATCGCAAG
chr20	7240270	7240384	7292270	7292384	+	5497	114	7	noL1	"COLO2T,COLO2N"	2437	106		"LINE:Ewing,Iskow,Stewart"			c20p7240327FS	AAGTGTTAAGCCATATTTCTCCTG	c20p7240327ES	ACCCTACCTTTCTTCTCTTCTCTC
chr20	7674662	7674998	7726662	7726998	+	1446	336	16	L1HS	"COLO2T,COLO2N"	2408	334	"L1HS,THE1D"				c20p7674830FS	TCTGTAAGTCATTAAAACCCTGTG	c20p7674830ES	TATTCTGGAGAGTGTACCAAGACC
chr20	8463700	8463869	8515700	8515869	+	13	169	6	noL1	"COLO2T,COLO2N"	10	170	(A)n		PLCB1		c20p8463784FS	TACCCTAATCAATCCTCTATCCTG	c20p8463784ES	TATTCCTGATACAAAGCAACTGAG
chr20	9177609	9177823	9229609	9229823	-	16	214	3	L1PA4	"COLO2T,COLO2N"	1	65	MLT1D		PLCB4		c20p9177716FS	TTCTGTTTTCTGTTTCATTGAGTG	c20p9177716ES	AAATAAAAATTAGTTGGGCATGG
chr20	11489129	11489258	11541129	11541258	+	1632	129	5	noL1	"COLO2T,COLO2N"	2148	324	L1MA6				c20p11489193FS	GTTTGTCAAGTTTCCTAACCTGTG	c20p11489193ES	CAAACACAGACAGAAAAATACTGC
chr20	11567401	11567774	11619401	11619774	+	5757	373	50	L1HS	"COLO2T,COLO2N"	5657	467	"L1HS,AT_rich,L1MA4A"				c20p11567587FS	AAAGTGGGATTGTTGGATAATATG	c20p11567587ES	TCATTCTCAGTAAACTATCGCAAG
chr20	12728528	12729266	12780528	12781266	+	14	738	5	noL1	"COLO2T,COLO2N"	5729	1075	LTR9				c20p12728897FS	CTGCTGTGTTCACTCCTTAAATAC	c20p12728897ES	GGATCCATATATTCCTCCTCTAATC
chr20	12729402	12729679	12781402	12781679	-	4358	277	9	L1HS	"COLO2T,COLO2N"	5729	1075	"L2a,L1HS,L2"	LINE:dbRIP			c20p12729540FS	CTCTTTGTTAGAAAATGATTTGGG	c20p12729540ES	GATGAGTTCATATCCTTTGTAGGG
chr20	14165950	14166220	14217950	14218220	-	14728	270	24	L1PA4	"COLO2T,COLO2N"	11764	214	"L1MEe,L1PA4"		MACROD2		c20p14166085FS	GTTGTTGCTGATGAGAAGTGTTAG	c20p14166085ES	AGACTGGATTAAGAAAATGTGGC
chr20	16427007	16427469	16479007	16479469	-	3002	462	11	noL1	"COLO2T,COLO2N"	1502	124	L1MC4a	LINE:Ewing	KIF16B		c20p16427238FS	CGAAGAAGTGTAAAGATTGATGTG	c20p16427238ES	TCAGTATACAGATACCAGGTGTGG
chr20	16918151	16918417	16970151	16970417	+	282	266	6	L1PA4	"COLO2T,COLO2N"	227	352	L1PA4				c20p16918284FS	CAAAGAGTAATTGCACTGTTTCAG	c20p16918284ES	TACTAATGTGAAATGACAGCCTTG
chr20	18774806	18775124	18826806	18827124	-	29	318	8	L1PA5	"COLO2T,COLO2N"	38	77	"L1PA5,MSTB,Tigger12"				c20p18774965FS	AAATCTCATGTTGTGATGTAATCC	c20p18774965ES	TTTCTCCAATAACGTTTTTCTTTC
chr20	18877998	18878662	18929998	18930662	-	45	664	11	L1HS	"COLO2T,COLO2N"	15	410	"L1HS,AT_rich,MLT1A"				c20p18878330FS	TGTGAAAGGAGTATGTACCTCAAG	c20p18878330ES	TAATGCTAGATGACACGTTAGTGG
chr20	18903989	18904335	18955989	18956335	-	9033	346	29	noL1	"COLO2T,COLO2N"	4809	385	"L1MCc,CT-rich"				c20p18904162FS	TACTCTATAACAGGGAACAGGAGC	c20p18904162ES	ACAATACTTCAGGCCAAGTAAAAC
chr20	19016255	19016565	19068255	19068565	-	594	310	27	L1PA2	"COLO2T,COLO2N"	348	310	"L1PA2,MIR"				c20p19016410FS	TTGAACCTATCCTCTCTCCTTATG	c20p19016410ES	TCATTCTCAGTAAACTATCGCAAG
chr20	19348192	19348529	19400192	19400529	-	19258	337	28	L1HS	"COLO2T,COLO2N"	16993	513	L1HS		SLC24A3		c20p19348360FS	GATTATTGCTAACACCAAAAGGAG	c20p19348360ES	TCATTCTCAGTAAACTATCGCAAG
chr20	19853357	19853758	19905357	19905758	+	12	401	3	noL1	"COLO2T,COLO2N"	19	402	AluSp		RIN2		c20p19853557FS	CCTAGAAAGAAGTTCCTCATCTTG	c20p19853557ES	CTTCATAATCCACCTCTTCATACC
chr20	21205158	21205910	21257158	21257910	+	11	752	3	noL1	"COLO2T,COLO2N"	16	65	"AluJr,AluSx1,L1MC4"				c20p21205534FS	GTATAATCAGGGACAGATGGATTC	c20p21205534ES	CCTGTAATCCCAGCTACTCTTG
chr20	21944215	21944657	21996215	21996657	+	10	442	2	L1PA3	"COLO2T,COLO2N"	14	945	L1PA3				c20p21944436FS	AATGACAGTGCTTAGGAGTCTAGG	c20p21944436ES	TCATTCTCAGTAAACTATCGCAAG
chr20	23360719	23361084	23412719	23413084	+	13694	365	30	L1HS	"COLO2T,COLO2N"	3758	357	"L1HS,AT_rich,AluJo"				c20p23360901FS	AATAAACCATTTTTCCCTTTAAGC	c20p23360901ES	GATGAGTTCATATCCTTTGTAGGG
chr20	23643389	23643776	23695389	23695776	-	89	387	5	L1PA3	"COLO2T,COLO2N"	58	341	"L1PBa,L1PA3,MLT1I"				c20p23643582FS	TTTAAGGAACTGTTAAGATCCTGC	c20p23643582ES	AAAAACTAAACACCGCATATTCTC
chr20	25085843	25086062	25137843	25138062	-	18	219	3	L1PA4	"COLO2T,COLO2N"	12	65	"L1PA4,L1MB7"				c20p25085952FS	GGACAGGATTGTTTTCTTAATTTC	c20p25085952ES	ATCATAACCAAGTGGGACTTATTC
chr20	26262220	26262627	26314220	26314627	-	14	407	3	noL1	"COLO2T,COLO2N"	27	150	ALR/Alpha				c20p26262423FS	GATCTCACAGACATTCTCAGACAC	c20p26262423ES	CAAAACTGCTGTATCAAAAGAAAG
chr20	28085955	28086128	29472294	29472467	-	17	173	3	L1HS	"COLO2T,COLO2N"	41	142	L1HS				c20p28086041FS	GGAAGGTAGACAAATTAGCATCTG	c20p28086041ES	AAAATTTTCTCCCATGTTGTAGG
chr20	28205219	28205584	29591558	29591923	+	104	365	4	noL1	"COLO2T,COLO2N"	283	409		LINE:Ewing			c20p28205401FS	AACTTTTTGTGAAACTTCTTCCTG	c20p28205401ES	CTAAGGAAATGTAAACTGGAGGAG
chr20	31561290	31561708	32097629	32098047	-	144	418	4	L1PA6	"COLO2T,COLO2N"	571	418	"AluY,L1PA6"		CBFA2T2		c20p31561499FS	AATGTGATGAAACCTCGTCTCTAC	c20p31561499ES	ACTAGATTAAGAAAATGTGGCCG
chr20	32279585	32279709	32815924	32816048	-	2373	124	11	noL1	"COLO2T,COLO2N"	494	123	"AT_rich,(T)n,L1M5"				c20p32279647FS	AGTTCTCCCCAGGTTTATCAATAG	c20p32279647ES	ATTAATAAGCAACTGCCACAAAAC
chr20	33211307	33211904	33747646	33748243	+	69	597	6	noL1	"COLO2T,COLO2N"	158	605	"AluJo,L1P3,AluSp,L1M5"				c20p33211605FS	CTAGGAGCAATAGGCTATACCAAG	c20p33211605ES	AAACCCCGTCTCTACTAAAAACAC
chr20	36173882	36174038	36740468	36740624	-	58	156	4	noL1	"COLO2T,COLO2N"	49	129	"(TTCC)n,AluJr4"				c20p36173960FS	TAGGTGGTGACAGAAGGTAGATG	c20p36173960ES	CCACTGGGTAACTCTGTAATGAAC
chr20	36485569	36486268	37052155	37052854	+	45	699	4	noL1	"COLO2T,COLO2N"	30	698	"L1MA9,AluSx"		LOC388796		c20p36485918FS	TCTTACACACTAGATGGTAGGTGC	c20p36485918ES	ATAGAGAAAGATCCTGTCATTTGC
chr20	37853759	37854029	38420345	38420615	+	171	270	7	noL1	"COLO2T,COLO2N"	36	114	L1PB1				c20p37853894FS	AGAGGTCTTATTGTAACAGGCATC	c20p37853894ES	ATGAGATAAAGAGGAAATAATGCG
chr20	40676930	40677042	41243516	41243628	-	13	112	5	L1PA2	"COLO2T,COLO2N"	5	69	"THE1B,L1PA2"		PTPRT		c20p40676986FS	GGAGAAAACTGTACAATCTCCAAG	c20p40676986ES	GAAATGTCCAACAATGATAGACTG
chr20	41384854	41385548	41951440	41952134	-	12595	694	26	noL1	"COLO2T,COLO2N"	11709	1067	"MLT1D,MIRb"	"LINE:dbRIP,Ewing,Iskow,LINE:Ewing,Iskow,Stewart"			c20p41385201FS	TAACAGATCTTCACACACACACAC	c20p41385201ES	ATACTTACATCAGCCCTTTGAGAG
chr20	41433751	41433999	42000337	42000585	+	1002	248	9	L1PA3	"COLO2T,COLO2N"	951	362	"L1PA3,AluSx"				c20p41433875FS	TTACAATAAACAGATGCAGAATGC	c20p41433875ES	GATGAGTTTATGTCCTTTGTAGGG
chr20	41457715	41458098	42024301	42024684	-	3170	383	36	L1HS	"COLO2T,COLO2N"	5872	381	"AluJb,L1HS,(T)n,MIRc"	LINE:dbRIP			c20p41457906FS	TACCTAGTGCATAACAATAGCTGC	c20p41457906ES	TCATTCTCAGTAAACTATCGCAAG
chr20	44004000	44004390	44570593	44570983	-	11	390	3	noL1	"COLO2T,COLO2N"	8	390	"AluSp,AluSc"		PCIF1		c20p44004195FS	AGAGACAGGATCTGGCTATGTTG	c20p44004195ES	CAAAAGAAAAGAATAAAAAGGCTG
chr20	45615343	45615597	46181936	46182190	-	31	254	6	L1PA4	"COLO2T,COLO2N"	48	254	"AluJb,L1PA4"		NCOA3		c20p45615470FS	ATGAGAAGCATTACTGTAAAAGGG	c20p45615470ES	ACAGACTGGATTAAGAAAACATGG
chr20	49197366	49197491	49763959	49764084	+	12	125	4	L1PA3	COLO2T	0	0	Tigger2a				c20p49197428FS	ATACACACACACACACACACACAC	c20p49197428ES	AAGAGATAGGTTTTGCTATGTTGC
chr20	49623202	49623559	50189795	50190152	+	332	357	8	L1PA3	"COLO2T,COLO2N"	58	114	"L1PA3,MIR"				c20p49623380FS	TCCACAAAGAAATATTTTGACAAG	c20p49623380ES	ACTAAAAATACAAAAATTAGCCCG
chr20	51210827	51211203	51777420	51777796	+	11	376	3	noL1	"COLO2T,COLO2N"	66	124	"MLT1N2,L2b"		TSHZ2		c20p51211015FS	CACATGTAAGGCTTTCTATCACAG	c20p51211015ES	AATACAAAAATTAACTTGGCATGG
chr20	51213032	51213431	51779625	51780024	-	7273	399	43	L1HS	"COLO2T,COLO2N"	5245	412	"MLT1F2,L1HS,(T)n"		TSHZ2		c20p51213231FS	AGTTAATTTCAGAGTTGGAAGCAG	c20p51213231ES	TTAACTCATGTAGTTTTTGGCAAG
chr20	51319700	51319965	51886293	51886558	+	72	265	6	L1HS	"COLO2T,COLO2N"	14	174	"L1HS,AT_rich"		TSHZ2		c20p51319832FS	TGGTACTCCACATCAGTCATTAAC	c20p51319832ES	AAAATGGAATGTAGCATTAACCTG
chr20	52294077	52294338	52860670	52860931	+	11	261	3	noL1	COLO2T	0	0	"L1MD2,L1PA4"				c20p52294207FS	ACTAAGAGAAGATGTCAAACAGGC	c20p52294207ES	ATGATGAGTTCATGTCCTTTGTAG
chr20	52299649	52299749	52866242	52866342	-	164	100	10	L1PA10	"COLO2T,COLO2N"	273	108	"SVA_E,(T)n"				c20p52299699FS	GGCATCTATATTTTTGGATTTCAG	c20p52299699ES	CTGTGTGGATAGAAGTAGACATGG
chr20	53873934	53874494	54440527	54441087	+	44331	560	48	L1HS	"COLO2T,COLO2N"	29060	628	"L2a,L1HS,MLT1D,(A)n,L1PA16"	"LINE:dbRIP,LINE:Iskow"			c20p53874214FS	TGCCTCTATAACCCTACGTACTTC	c20p53874214ES	TGGGAGATATACCTAATGCTAGATG
chr20	54552026	54552288	55118619	55118881	-	11	262	4	L1PA2	"COLO2T,COLO2N"	7	270	"L2a,L1PA2"				c20p54552157FS	CCTTTATAAATTACCCAGTTTTGG	c20p54552157ES	TGAATTACAATATCACAGTCCCTG
chr20	59534731	59534995	60101336	60101600	-	54	264	3	L1PA3	"COLO2T,COLO2N"	47	230	L1PA3		CDH4		c20p59534863FS	TCTCCATTTTACAGAAGAGGAAAC	c20p59534863ES	TTTTTCAGTTGCTCATTAAAATTG
chr20	59565982	59566181	60132587	60132786	-	558	199	6	noL1	"COLO2T,COLO2N"	377	198		"LINE:Ewing,Iskow,Stewart"	CDH4		c20p59566081FS	GGAGTACGTATTTTAGGCATCATC	c20p59566081ES	AAAACTCGAGCTTGAAAACATAAC
chr21	13311487	13311994	14389616	14390123	-	1512	507	5	noL1	"COLO2T,COLO2N"	826	100	AluSp	LINE:Ewing			c21p13311740FS	GTTAGACAGGATGGTATGGATCTC	c21p13311740ES	ACTGACAAAGGAAGACTCTGTTTC
chr21	14701664	14701777	15779793	15779906	-	10	113	2	L1PA3	COLO2T	0	0	"L1MA3,MSTA"				c21p14701720FS	GTAATTTTGATTTGCATTTCTGTG	c21p14701720ES	ATGATGAGTTCATGTCCTTTGTAG
chr21	14881722	14881957	15959851	15960086	-	28	235	6	L1PA2	"COLO2T,COLO2N"	53	289	"(TTTA)n,L2"				c21p14881839FS	CTCTACCATTCCCTTTTAATTGTC	c21p14881839ES	GACTGGATTAAGAAAATATGGCAC
chr21	15555530	15555658	16633659	16633787	-	88	128	7	L1PA3	"COLO2T,COLO2N"	64	211	L1PA3				c21p15555594FS	CATTAAATTCGAAAAAGGAGAAAG	c21p15555594ES	TAAGAAAAGGTGGCACATATACAC
chr21	15850799	15850899	16928928	16929028	+	15	100	2	noL1	"COLO2T,COLO2N"	18	458	L1PA3				c21p15850849FS	GGACAATATATGTTTCATCACAGC	c21p15850849ES	ATTAAAAAGTCAGGAAACAACAGG
chr21	16838085	16838634	17916214	17916763	-	5016	549	20	L1HS	"COLO2T,COLO2N"	1976	549	L1HS		C21orf34		c21p16838359FS	ACCTTACGATAAACTTGGTTTCAG	c21p16838359ES	ACACCGCATATTCTCACTCATAG
chr21	17390659	17390783	18468788	18468912	+	43	124	5	L1PA3	"COLO2T,COLO2N"	45	123	L1PA3				c21p17390721FS	ACTAGATCTCTTGTGAACTGAGGG	c21p17390721ES	CAAATGTCCAACAATGATAGACTG
chr21	17599264	17599678	18677393	18677807	-	32586	414	48	L1HS	"COLO2T,COLO2N"	39882	608	"L1HS,HERV9-int"				c21p17599471FS	TTCAACCTATATCTATCTGCCTCC	c21p17599471ES	TCATTCTCAGTAAACTATCGCAAG
chr21	17627712	17627812	18705841	18705941	+	27	100	3	L1PA2	"COLO2T,COLO2N"	36	149	"L1MB3,L1PA2"				c21p17627762FS	AGAAGATTGAAATTGCATAATGTG	c21p17627762ES	ACACTGCATATTCTCACTCATAGG
chr21	18042068	18042278	19120197	19120407	-	22	210	4	L1PA4	"COLO2T,COLO2N"	5	75	"T-rich,L4,L1PA4"				c21p18042173FS	GCTTCCTAAACTAGGGGAAGATAC	c21p18042173ES	ATGATGAGTTCATGTCCTTTGTAG
chr21	18438806	18439207	19516935	19517336	-	293	401	8	noL1	"COLO2T,COLO2N"	126	386			CHODL		c21p18439006FS	AGCTTGTTCCAATTATCACTCTTC	c21p18439006ES	TTTGTATTTTTAGTAGAGACGGGG
chr21	18951156	18951676	20029285	20029805	+	32	520	7	L1PA16	"COLO2T,COLO2N"	116	72	"AT_rich,AluY,L1PA16"		"BC051441,BC028044"		c21p18951416FS	ATAAATATCCACCATTTAGGGGAC	c21p18951416ES	TCACAAATAGGTGCAAACATTAAG
chr21	19303608	19303908	20381737	20382037	+	31	300	5	L1HS	"COLO2T,COLO2N"	18	416	"L1HS,L1MC1"				c21p19303758FS	TTGCATTTTGTATATCTTCTTTGG	c21p19303758ES	TCATTCTCAGTAAACTATCGCAAG
chr21	20493408	20493733	21571537	21571862	-	99	325	12	L1HS	"COLO2T,COLO2N"	178	503	"L1MD1,L1HS"				c21p20493570FS	CAACTGTTGATACAGAAAACTTGG	c21p20493570ES	TATGCAGCCATATAAAATGATGAG
chr21	22003822	22004045	23081951	23082174	+	119634	223	49	L1PA4	"COLO2T,COLO2N"	91762	294	"L1PA4,(TAAAA)n"				c21p22003933FS	CGTTTAATCTATATCTCCACCCAC	c21p22003933ES	CAAATGTCCAACAATGATAGACTG
chr21	23046966	23047316	24125095	24125445	+	42733	350	55	L1HS	"COLO2T,COLO2N"	48213	300	L1HS				c21p23047141FS	TGAATTATGAATGTTTCTTGGTTG	c21p23047141ES	GATGAGTTCATATCCTTTGTAGGG
chr21	24972697	24972885	26050826	26051014	+	1002	188	8	L1PA4	"COLO2T,COLO2N"	1081	188	"AluJb,L1PA4"				c21p24972791FS	AGGCACTTAGTAACTGATGAGGAC	c21p24972791ES	GGATGAGTTCATGTCCTTTTTAAG
chr21	25031271	25031513	26109400	26109642	+	15	242	3	L1PA4	COLO2T	0	0	"L1PA4,MLT1A0"				c21p25031392FS	TTCATTCCATTCTATTACAACGTG	c21p25031392ES	CAAATGTCCAAAAATGATAGACTG
chr21	25146354	25146622	26224483	26224751	+	422	268	4	L1PA3	"COLO2T,COLO2N"	2	65	"L1PA3,HERVL40-int"		BC040319		c21p25146488FS	TCTCCTGCACCATTACTAAGATAAC	c21p25146488ES	TCATTCTCAGTAAACTATCGCAAG
chr21	25328092	25328465	26406221	26406594	-	495	373	6	L1PA3	"COLO2T,COLO2N"	844	376	"MSTD,L1PA3"		BC040319		c21p25328278FS	CTCTTCAATAGTTGGAATCATGTC	c21p25328278ES	TCATTCTCAGTAAACTATCGCAAG
chr21	25712920	25713401	26791049	26791530	+	9445	481	30	noL1	COLO2T	0	0	"L1MDa,AluSz,LTR89"		"AY035383,AY035382"		c21p25713160FS	TTTTTAGTAGAGATGGGGTTTCAC	c21p25713160ES	CTGATAATACCCTAAATGTCCAGG
chr21	25747210	25747738	26825339	26825867	+	3805	528	30	L1HS	"COLO2T,COLO2N"	11870	429	"L1HS,L2c"	LINE:dbRIP			c21p25747474FS	TGGTTCTATTTCTCTAGACAACCC	c21p25747474ES	CACAGAGTGCTTGGTAAAGTGTAG
chr21	26679316	26679729	27757445	27757858	+	441	413	10	L1PA3	"COLO2T,COLO2N"	656	413	"L1PA3,AT_rich,MER5B"				c21p26679522FS	ACTGGGAGACACACTAAAGAAAAC	c21p26679522ES	TGTGTTAGAGGAACATAGCTGAAG
chr21	26768208	26768658	27846337	27846787	-	233	450	2	noL1	"COLO2T,COLO2N"	856	65	"AluSg,FLAM_C"		CYYR1		c21p26768433FS	GATGAAAGAATAATGCATGAGATG	c21p26768433ES	AGAACGATAAGAGAAGTTGTGGAG
chr21	27577431	27577800	28655560	28655929	+	19	369	2	noL1	"COLO2T,COLO2N"	21	65	"MLT1E2,AluYc"				c21p27577615FS	TTGTCAACCTCTAGAAGTAAAGGC	c21p27577615ES	AATTGTAGTCTGTCTTTAGGCTGC
chr21	27991000	27991405	29069129	29069534	+	11603	405	46	noL1	"COLO2T,COLO2N"	26767	446	L2a	"LINE:Ewing,Iskow"			c21p27991202FS	TGACATTATATTTCTATTGGACGG	c21p27991202ES	CTTACATGTCCATGTGTTCTCATC
chr21	28214998	28215173	29293127	29293302	+	624	175	5	noL1	"COLO2T,COLO2N"	875	175	"AluYa5,THE1D"	LINE:Iskow			c21p28215085FS	TTTCTATTCCTCTCGTTGAGATTC	c21p28215085ES	TTTCAAGAATTTACCATGTGACAG
chr21	28959428	28959657	30037557	30037786	-	372	229	32	L1HS	"COLO2T,COLO2N"	437	219	"AluJb,L1HS,(T)n"				c21p28959542FS	ATTCACTCCTAAGCTTTTCAATTC	c21p28959542ES	TGGGTCAAATGGTATTTCTAGTTC
chr21	29025915	29026186	30104044	30104315	+	1406	271	17	L1PA3	"COLO2T,COLO2N"	666	314	L1PA3	LINE:Ewing			c21p29026050FS	AAAGAACACTAACTGTGACAGCAC	c21p29026050ES	TTATACTTGCCCATGAAAATATCC
chr21	31135986	31136326	32214115	32214455	+	31203	340	27	L1HS	"COLO2T,COLO2N"	19365	344	"L1HS,AluSq2,A-rich"	LINE:dbRIP			c21p31136156FS	TCTAGCCGAGTGTAGAAAAAGTTC	c21p31136156ES	TCATTCTCAGTAAACTATCGCAAG
chr21	31225420	31225638	32303549	32303767	+	143	218	5	L1PA3	"COLO2T,COLO2N"	489	160	"L1PA3,HSMAR2"				c21p31225529FS	AGCTATCAATTTTAAAAGAACCCC	c21p31225529ES	CAAATGTCCAACAATGATAGACTG
chr21	32520421	32520595	33598550	33598724	+	59	174	4	L1PA2	"COLO2T,COLO2N"	56	174	"L1MA9,L1PA2"				c21p32520508FS	ATCCTAGAAAATATCCCATGTGTG	c21p32520508ES	TCATTCTCAGTAAACTATCGCAAG
chr21	33740390	33740871	34818520	34819001	-	20	481	2	noL1	"COLO2T,COLO2N"	16	65	"(CA)n,(A)n,AluSz"		TMEM50B		c21p33740630FS	CAACCTAAACTTAAATCCATAGGC	c21p33740630ES	CTCCTGAGTAGCTGGGACTAGAG
chr21	33813691	33814064	34891821	34892194	-	13	373	3	noL1	"COLO2T,COLO2N"	13	65	"AluJb,AT_rich,AluY"		GART		c21p33813877FS	CACAATTTCTGGTTTAAATGGTC	c21p33813877ES	GAGTTATTTCCTCCTTATTGACCC
chr21	36622511	36623490	37700641	37701620	+	68	979	3	noL1	"COLO2T,COLO2N"	106	134	"MER30,AluSq10,AluSx,AluSx1"		MORC3		c21p36623000FS	AGTAGCTGAGATTACAGGCAACTG	c21p36623000ES	TTTAACCACACCTTAGTTCATGC
chr21	36795495	36796157	37873625	37874287	-	26	662	2	noL1	"COLO2T,COLO2N"	55	662	(T)n		CLDN14		c21p36795826FS	CCAGTTTATATCAGCAACATGAAG	c21p36795826ES	CAAGAAAGAATAGCACCATTAACC
chr21	39093067	39093515	40171197	40171645	+	19	448	5	noL1	"COLO2T,COLO2N"	3	65	"L1MB8,AluSz"				c21p39093291FS	AACATGATGAAATCCCATCTCTAC	c21p39093291ES	CTATGTCTTCCTTCACCACCC
chr21	39121986	39122154	40200116	40200284	-	11	168	2	L1PA3	"COLO2T,COLO2N"	19	65	L1PA3				c21p39122070FS	TTTAAATTTCTTGTAGAGATGGGG	c21p39122070ES	CAAATGTCCAACAATGATAGACTG
chr21	39566050	39566260	40644180	40644390	+	36	210	6	L1PA8	"COLO2T,COLO2N"	56	69	"L1PA8,AluY"		"BRWD1,WDR9"		c21p39566155FS	AAATAGAAAAATTAGCCGGATATG	c21p39566155ES	AAAAATACAAAAATTAGCTGGGC
chr21	40100060	40100403	41178190	41178533	-	18	343	3	L1PA5	"COLO2T,COLO2N"	9	344	"MER39B,L1PA5"				c21p40100231FS	AAGTTTGCTGAAAGTCCTTGATAC	c21p40100231ES	AACTAGAAATACCATTTGACCCAG
chr21	40316509	40316643	41394639	41394773	-	16	134	3	L1PA2	"COLO2T,COLO2N"	32	224	MIRb		DSCAM		c21p40316576FS	TGCTGTTGAGAAACTCTGTTTTAG	c21p40316576ES	CAATGATTGGATTAAGAAAATGTG
chr21	40612093	40612385	41690223	41690515	+	827	292	14	L1PA3	"COLO2T,COLO2N"	2622	406	L1PA3		DSCAM		c21p40612239FS	AATGGAATCTAAGTTGATGTGACC	c21p40612239ES	CTGAGAATGATGATTTCCAATTTC
chr21	41889214	41889359	43016145	43016290	+	42	145	7	L1PA2	"COLO2T,COLO2N"	2	366	L1PA2				c21p41889286FS	GAAGATCCTGTTTCCAATAAAGTC	c21p41889286ES	TGATGAGTTCATGTTCCTTTGTAG
chr22	15341681	15342205	16961681	16962205	+	2385	524	12	L1PA2	"COLO2T,COLO2N"	2098	612	"L1MEd,L1PA2"				c22p15341943FS	ATCAATTCTGTAAAATTTGAAGCC	c22p15341943ES	CTAATGATAGATGACACGTTGGTG
chr22	15626035	15626301	17246035	17246301	+	13	266	3	noL1	"COLO2T,COLO2N"	16	405	L1MB3	"LINE:Beck,Ewing,Iskow"			c22p15626168FS	GAGTATCTGGGATTATAGGCACAC	c22p15626168ES	ATTTTGCAATTATCTTTGTTCTCC
chr22	20816065	20816392	22486065	22486392	-	900633	327	24	noL1	"COLO2T,COLO2N"	2154713	563	LTR9	"LINE:Beck,Ewing,Iskow,Stewart"	abParts		c22p20816228FS	CAAGGTTTTATAAAGGAGCTTGAG	c22p20816228ES	ATACAATTTTGAAAACATTCACCC
chr22	21045638	21045904	22715638	22715904	+	5826	266	11	noL1	"COLO2T,COLO2N"	2898	289	L1PB1	"LINE:Ewing,Iskow"	abParts		c22p21045771FS	TATTCCATTAGTTCTTTCCCTCTG	c22p21045771ES	TGAGTTCTTGATTTGATATTCAGC
chr22	22921341	22921702	24591341	24591702	+	2212	361	10	L1PA3	"COLO2T,COLO2N"	1887	401	"L1PA3,AluSc"				c22p22921521FS	GAAGTTCTCTATCTGCCTGAAGTC	c22p22921521ES	TCATTCTCAGTAAACTATCGCAAG
chr22	25631594	25631848	27301594	27301848	+	874	254	16	L1PA13	"COLO2T,COLO2N"	822	268	"GA-rich,L1PA13"				c22p25631721FS	ATAAAAATTCAGCTTCTCAGTTGC	c22p25631721ES	AAGGAAGAACAGAGGAGAGAAGAG
chr22	25947148	25947692	27617148	27617692	+	12	544	3	noL1	"COLO2T,COLO2N"	25	546	"(CA)n,AluSc"				c22p25947420FS	TCTACCACTGGAATCCTTAACTTC	c22p25947420ES	GATTCATAATAAGCACCTTCAACC
chr22	26336665	26336841	28006665	28006841	+	56	176	5	L1PA3	"COLO2T,COLO2N"	26	140	"(TAA)n,(GGAA)n,(TGAA)n"				c22p26336753FS	GCTCTGAGAAGTCCAGTGATTC	c22p26336753ES	TTGTTGGACATTTGGAATACTATG
chr22	26797449	26797786	28467449	28467786	+	13762	337	11	L1PA2	"COLO2T,COLO2N"	6395	310	L1PA2		TTC28		c22p26797617FS	CTAACATCCACATCTCAAAACTTG	c22p26797617ES	ACAAAAATTAAGAAAAACACCCAG
chr22	26815694	26816156	28485694	28486156	+	81	462	2	L1PA3	"COLO2T,COLO2N"	85	462	"L1ME4a,(TAAAA)n,L1PA4"		TTC28		c22p26815925FS	AGCCAAATGTTTAATCACATAGAC	c22p26815925ES	GGAGGGATAGCATTAGGAGATATAC
chr22	27112569	27112811	28782569	28782811	-	67	242	3	L1PA3	"COLO2T,COLO2N"	62	195	(TTTTG)n				c22p27112690FS	GTTTTAGCAGTTGGCATATTCATC	c22p27112690ES	AACCATCATTCTCAGCAAACTATC
chr22	27337203	27337547	29007203	29007547	-	5746	344	18	L1HS	"COLO2T,COLO2N"	6282	345	"L1HS,L1PA6"				c22p27337375FS	AATATGGGACTATGTGAAAAGACC	c22p27337375ES	CATTTGCTTGTCTAAAATGATGAG
chr22	27395249	27395679	29065249	29065679	+	169	430	9	L1HS	"COLO2T,COLO2N"	13763	365	L1HS	LINE:dbRIP			c22p27395464FS	AAAAATTCAAGCATATGGAAAAAC	c22p27395464ES	GATGAGTTCATATCCTTTGTAGGG
chr22	29566043	29566324	31236043	31236324	+	19	281	8	L1PA2	"COLO2T,COLO2N"	52	186	"L1P1,L2c,L1PA2,(A)n"		OSBP2		c22p29566183FS	TTACATGTACACATCTGGTAAGGG	c22p29566183ES	TAGATTCTGGATATTAGCCCTTTG
chr22	32154747	32154952	33824747	33824952	+	14	205	6	noL1	"COLO2T,COLO2N"	10	71	"AluY,MIRb"		"LARGE,KIAA0609"		c22p32154849FS	TTATGAAAGGACTTAGGCAACATC	c22p32154849ES	TTTTTAGTAGAGATGGGGTTTCAC
chr22	32267131	32267755	33937131	33937755	+	11	624	4	noL1	"COLO2T,COLO2N"	15	626	"L1ME4a,AluJb,AT_rich"		"LARGE,KIAA0609"		c22p32267443FS	GCCTTGAATAGCTCTTAATGTTTC	c22p32267443ES	AATATAAAAATTAGCCAGGTGTGG
chr22	33275236	33275725	34945236	34945725	-	12067	489	15	L1HS	"COLO2T,COLO2N"	9776	489	"L1MEd,L1HS,(T)n,MER91C"				c22p33275480FS	GGCCATCTATCTTTTATTGTATGG	c22p33275480ES	TCATTCTCAGTAAACTATCGCAAG
chr22	33548874	33548992	35218874	35218992	+	10	118	2	L1PA5	"COLO2T,COLO2N"	10	429	L1PA5				c22p33548933FS	CTGAATAACACATGTCCAGTTTTC	c22p33548933ES	ATGCTGATATAAAGACACATGCAC
chr22	37112157	37112380	38782211	38782434	+	1008	223	11	L1PA3	"COLO2T,COLO2N"	1920	248	L1PA3		"LOC400927,CSNK1E,CKIe"		c22p37112268FS	ATGAGGTACAATGTGATGTTTCAG	c22p37112268ES	TCATTCTCAGTAAACTATCGCAAG
chr22	39497914	39498645	41167968	41168699	-	22	731	3	noL1	"COLO2T,COLO2N"	14	731	"AluJr,L1MA2,AT_rich,AluJo,L1M5"		SLC25A17		c22p39498279FS	TTTTCCATGATGTGATTATTATGC	c22p39498279ES	AAACCTGTAATCACAGCTACACAC
chr22	42655518	42655936	44324185	44324603	-	722	418	11	noL1	"COLO2T,COLO2N"	793	361	MER5A	"LINE:Ewing,Iskow,Stewart"	"PNPLA3,SAMM50"		c22p42655727FS	AATACCAAAACACCATTAAATTCAG	c22p42655727ES	CTCTGAAGGAAGGAGGGATAAG
chr22	45758254	45758973	47379590	47380309	-	127	719	6	noL1	"COLO2T,COLO2N"	230	719	"AT_rich,AluSx"		TBC1D22A		c22p45758613FS	ACTATGAAGGTTCCAGCCAGATAC	c22p45758613ES	GCTGTAATTCAAGAAGTAATAGCG
chr22	45775855	45776034	47397191	47397370	-	92	179	7	noL1	"COLO2T,COLO2N"	155	678	"MER6A,AluSq2,(T)n"		TBC1D22A		c22p45775944FS	ATCTACAAAATAAGGACTTCCTGG	c22p45775944ES	TTATTTAATTCCACTTAGCCATGAG
chr22	47735988	47736433	49349984	49350429	+	211	445	2	noL1	"COLO2T,COLO2N"	226	66	"AT_rich,AluY"				c22p47736210FS	ATGTTCATGGAAGGATGAGAAAG	c22p47736210ES	GTCTGAACCTCTGCAAATAAGAC
chr3	630875	631436	655875	656436	-	159606	561	73	noL1	"COLO2T,COLO2N"	148366	576	"AT_rich,MIRb"	LINE:Ewing	AK126307		c3p631155FS	TGTTGACTTTCTGTCTCGTTAGTC	c3p631155ES	AGAAAAGTTAGGAACAGTGCAAAC
chr3	2025138	2025565	2050138	2050565	+	213225	427	48	L1HS	"COLO2T,COLO2N"	249671	427	"L1HS,MER58A"	LINE:dbRIP			c3p2025351FS	AAAAGTGAAAAATGGTTCAGAGTC	c3p2025351ES	GATGAGTTCATATCCTTTGTAGGG
chr3	3149325	3149631	3174325	3174631	+	59489	306	46	L1HS	"COLO2T,COLO2N"	52429	414	"L1HS,A-rich"		TRNT1		c3p3149478FS	TAGCTGGGAAATAATCTTCTATGC	c3p3149478ES	TCATTCTCAGTAAACTATCGCAAG
chr3	3985545	3986304	4010545	4011304	+	9906	759	23	L1HS	"COLO2T,COLO2N"	7535	678	"MLT1G1,L1HS,MIRb"		SUMF1		c3p3985924FS	TCTCTTGCTATTCTGTGAGTTGAC	c3p3985924ES	GATGAGTTCATATCCTTTGTAGGG
chr3	4053286	4053813	4078286	4078813	+	20	527	2	noL1	"COLO2T,COLO2N"	15	515	(A)n		SUMF1		c3p4053549FS	GTGGATAAGGAGACCACTTAGAAC	c3p4053549ES	AAAATTTTCTGTTGACTTTTGGAG
chr3	4055228	4055957	4080228	4080957	-	95755	729	25	L1HS	"COLO2T,COLO2N"	151112	700	"L1HS,L1PREC2,L1M5"	LINE:dbRIP	SUMF1		c3p4055592FS	AGCAGGGATAGTACCACTACAGAG	c3p4055592ES	TGGGAGATATACCTAATGCTAGATG
chr3	4939254	4939546	4964254	4964546	+	3856	292	10	L1HS	"COLO2T,COLO2N"	6026	486	"AT_rich,MIR3"		"AK056892,AK311646"		c3p4939400FS	TTTCTTTTAAGCTCTGAAATAGCC	c3p4939400ES	TCATTCTCAGTAAACTATCGCAAG
chr3	5928377	5928712	5953377	5953712	-	1509	335	7	L1PA3	"COLO2T,COLO2N"	2285	367	"L1MDa,L1PA3,L1PA16"				c3p5928544FS	ATGTGCAAATGAGAAGAATGTATG	c3p5928544ES	TCATTCTCAGTAAACTATCGCAAG
chr3	6163026	6163391	6188026	6188391	-	12	365	3	L1PA3	"COLO2T,COLO2N"	19	337	"L1MD1,L1PA3"				c3p6163208FS	TCCATGTTTTGTTAGATTTACACC	c3p6163208ES	TGGAAATCATCATTCTCAGTAAAC
chr3	6501442	6501586	6526442	6526586	-	33	144	3	L1PA2	"COLO2T,COLO2N"	21	65	L1MEg				c3p6501514FS	AGAGACAGGGTTTCACTGTGTTAG	c3p6501514ES	TAGACTGGATTAAGAAAATGTGGC
chr3	6903599	6903950	6928599	6928950	-	59	351	6	L1PA6	"COLO2T,COLO2N"	74	271	"L1PA3,MIR"		GRM7		c3p6903774FS	GAATATTTGTTGAATGAACACCTG	c3p6903774ES	TCATTCTCAGTAAACTATCGCAAG
chr3	6961679	6961793	6986679	6986793	-	10	114	3	L1PA4	"COLO2T,COLO2N"	5	86	"L1ME1,L1PA4"		GRM7		c3p6961736FS	TGAGTCTTTGCATATGTATTCCTG	c3p6961736ES	GAAATGTCCAACAATGATAGACTG
chr3	7321717	7322091	7346717	7347091	-	524	374	13	L1HS	"COLO2T,COLO2N"	741	370	"HAL1,L1HS"	LINE:dbRIP	GRM7		c3p7321904FS	TTTCCCATATATTATCTCTGCTCC	c3p7321904ES	TCATTCTCAGTAAACTATCGCAAG
chr3	7729798	7730559	7754798	7755559	-	10	761	3	noL1	"COLO2T,COLO2N"	6	65	"AluSx1,MLT1C,(T)n,MIRb"		GRM7		c3p7730178FS	ACTTGGTTATATCTGCAAAGATCC	c3p7730178ES	AACTAAATGTGTGTTTCCACTTCC
chr3	8353175	8353337	8378175	8378337	+	100	162	3	L1PA3	"COLO2T,COLO2N"	121	162	"L1PA3,L2c"		BC020876		c3p8353256FS	CAAGCTGTCATAATGTATACTGGC	c3p8353256ES	CAAATGTCCAACAATGATAGACTG
chr3	8409149	8409291	8434149	8434291	+	28	142	2	L1PA3	"COLO2T,COLO2N"	3	65			BC020876		c3p8409220FS	CAAGTCATCATCTACTGTGTCCTC	c3p8409220ES	ATGATGAGTTCATGTCCTTTGTAG
chr3	11612467	11612567	11637467	11637567	+	24	100	3	L1PA3	"COLO2T,COLO2N"	55	514	L1MC4		VGLL4		c3p11612517FS	GGTTCACCAGTAAGAACTACATCC	c3p11612517ES	GATGAGTTTATGTCCTTTGTAGGG
chr3	11948810	11949501	11973810	11974501	+	66	691	5	L1PA4	"COLO2T,COLO2N"	56	691	"(TAAA)n,L1PA4"				c3p11949155FS	TCTATTTGCTGTTCAGTATTCTCG	c3p11949155ES	CGTATGTTTATTGTGGCACTACTC
chr3	12114096	12114783	12139096	12139783	+	37	687	5	L1PA5	"COLO2T,COLO2N"	60	609	"L1PA5,AluY,L1MB7"		SYN2		c3p12114439FS	CCCTACATCCTTTGTGCTATTATC	c3p12114439ES	GTAGTCCTAGCTACTCGGGAGG
chr3	13935484	13935639	13960483	13960638	+	287	155	5	L1PA3	"COLO2T,COLO2N"	467	185	"L1PA3,AT_rich,L1PA16"				c3p13935561FS	CTAATGGAACAGAATAAAGAACCC	c3p13935561ES	AAACTAGAAACCATCATTCTCAGC
chr3	17874176	17874592	17899172	17899588	-	30157	416	42	L1HS	"COLO2T,COLO2N"	36267	340	"L1PA2,L1MA3"				c3p17874384FS	TTTGGGCATATCTCTCTTTTTAAC	c3p17874384ES	GTCTTGTAGAGATCACATGGACAC
chr3	18257478	18257756	18282474	18282752	+	12	278	4	noL1	"COLO2T,COLO2N"	15	70	"AT_rich,L1ME1"		BC035826		c3p18257617FS	GGTCTTTTTAATTAAGGCCATTC	c3p18257617ES	TAGTTCCTTTTCATTTTTAGGCTG
chr3	18869689	18869798	18894685	18894794	+	17	109	4	noL1	"COLO2T,COLO2N"	22	87	A-rich				c3p18869743FS	TTTTTCTAGATAATGGGAAAGGAC	c3p18869743ES	AGAATTGCAGGAAGATAAGGATAG
chr3	18946611	18947014	18971607	18972010	-	166	403	7	L1PA2	"COLO2T,COLO2N"	112	413	"L1PA2,MSTB"				c3p18946812FS	AGCTTTGAACTTCTATGGAACAAC	c3p18946812ES	AACTCCGCATATTCTCACTCATAG
chr3	19356454	19356902	19381450	19381898	-	4965	448	24	L1HS	"COLO2T,COLO2N"	8159	390	"L1HS,MIR,AT_rich"		KCNH8		c3p19356678FS	TCTTTCAAGTATGTAGCAAAGGTG	c3p19356678ES	TTGAATCCTAATGCTAGATGACAC
chr3	19640213	19640342	19665209	19665338	-	57	129	4	L1PA3	"COLO2T,COLO2N"	12	282	"L1PA3,(TTA)n"				c3p19640277FS	AAACCAGGTATTAAGAGGGTTCAC	c3p19640277ES	CAAATGTCCAACAATGATAGACTG
chr3	20723530	20723779	20748526	20748775	-	569	249	7	noL1	"COLO2T,COLO2N"	1078	250	L1ME1	"LINE:Beck,Ewing,Iskow"			c3p20723654FS	TACTAAAATGTGCAAGGAACTCTG	c3p20723654ES	CCACCATATACCTATTAAAATGGC
chr3	22053154	22053282	22078150	22078278	-	81	128	15	L1PA4	"COLO2T,COLO2N"	82	79	L1PA4		ZNF385D		c3p22053218FS	AGCTGTGACCAGAAAGATATAACC	c3p22053218ES	TACCCAAAGGATTATAAAACATGC
chr3	22072740	22073119	22097736	22098115	+	2438	379	15	L1HS	"COLO2T,COLO2N"	2767	379	L1HS	LINE:dbRIP	ZNF385D		c3p22072929FS	GAGATCAACTGATTCCAATCTACC	c3p22072929ES	GATGAGTTCATATCCTTTGTAGGG
chr3	22127240	22127364	22152236	22152360	+	11	124	3	L1PA4	"COLO2T,COLO2N"	23	481	L1PA4		ZNF385D		c3p22127302FS	TGTAGATTTTCATCCATTTTAGGC	c3p22127302ES	TAAATCATGCTGCTGTAAAGACAC
chr3	24962558	24962799	24987554	24987795	-	12217	241	14	noL1	"COLO2T,COLO2N"	11069	375	AluY	"LINE:dbRIP,Ewing,Iskow,Stewart"			c3p24962678FS	ATTTTGCTTTCAAACTGGTAAGTC	c3p24962678ES	CTAAGCTGGTCTCTAATTCCTGG
chr3	25715669	25716008	25740665	25741004	-	12775	339	28	L1HS	"COLO2T,COLO2N"	12670	318	"L1HS,ERVL-E-int"				c3p25715838FS	TACTGATTGCTATAGTGAATCCCC	c3p25715838ES	TAAGAAAATGGGGCACATATACAC
chr3	26400933	26401256	26425929	26426252	-	22	323	5	L1PA2	"COLO2T,COLO2N"	24	475	"L1PA2,AT_rich,AluSq2,(T)n"				c3p26401094FS	TAGTTGCTCTACACACTTTCCAAC	c3p26401094ES	TCATTCTCAGTAAACTATCGCAAG
chr3	26414331	26414566	26439327	26439562	-	29797	235	26	L1HS	"COLO2T,COLO2N"	42678	429	L1HS	LINE:dbRIP			c3p26414448FS	CACAGATACGGAACCCTTAAATAC	c3p26414448ES	GATGAGTTCATATCCTTTGTAGGG
chr3	27110118	27110538	27135114	27135534	+	8718	420	40	L1HS	"COLO2T,COLO2N"	10368	501	"L1HS,(A)n,MER58A,L1M5"				c3p27110328FS	CATTTATGTATGATATCTGGCTGC	c3p27110328ES	GATGAGTTCATATCCTTTGTAGGG
chr3	28236838	28236998	28261834	28261994	-	22110	160	12	noL1	"COLO2T,COLO2N"	11505	142					c3p28236918FS	AGCCAAAGTGTATATTAGTGGCTC	c3p28236918ES	GGATGTTGTGATATATGAAGCAAG
chr3	28509305	28509697	28534301	28534693	-	42	392	7	L1PA2	"COLO2T,COLO2N"	46	388	"T-rich,L1PA2"		ZCWPW2		c3p28509501FS	CCATCTTAATGAATTTTCTGAACC	c3p28509501ES	ATGATGAGTTCATGTCCTTTGTAG
chr3	30394142	30394389	30419138	30419385	-	47172	247	22	noL1	"COLO2T,COLO2N"	27959	155	L1MA1	"LINE:Ewing,Iskow"			c3p30394265FS	TATGCTTTGAGTTACAAACAGTCC	c3p30394265ES	AATGAAACAGAATAGAGAACCCAG
chr3	30644607	30645099	30669603	30670095	-	39	492	5	noL1	"COLO2T,COLO2N"	121	490	(T)n		"TGFBR2,Tbeta RIIC"		c3p30644853FS	ATTATAGGCTGTTTCTTTGTCCTG	c3p30644853ES	AAGGTCTCAGAAGTGAGAGAAATG
chr3	32045750	32045852	32070746	32070848	-	24	102	4	L1PA4	"COLO2T,COLO2N"	3	87	"L1PA4,MER50"				c3p32045801FS	TAGGTAGCTAGTCAGGACACACAC	c3p32045801ES	TCTGGCTCTACCTGAGATATTTTC
chr3	32295557	32295726	32320553	32320722	-	89	169	8	L1PA2	"COLO2T,COLO2N"	102	167	"L1PA2,MLT1K"		"CKLFSF8,CMTM8"		c3p32295641FS	ACTAAGGGTCAGTCCTGTTTACTG	c3p32295641ES	CAAATGTCCAACAATGATAGACTG
chr3	33529018	33529538	33554014	33554534	+	3209	520	43	L1HS	"COLO2T,COLO2N"	1105	520	"L1HS,(A)n,AluY,(CCAA)n"	LINE:dbRIP	"CLASP2,KIAA0627"		c3p33529278FS	TGTTTGGTAGTGGTACATCTATGG	c3p33529278ES	TCATTCTCAGTAAACTATCGCAAG
chr3	34421636	34421949	34446632	34446945	+	176	313	9	L1PA4	"COLO2T,COLO2N"	216	276	"L1PA4,MIRc"				c3p34421792FS	AATTTCTTTATTCTCCATTGAAGC	c3p34421792ES	AACCATCATTCTCAGCAAACTATC
chr3	34429268	34429693	34454264	34454689	-	332	425	9	L1PA2	"COLO2T,COLO2N"	239	434	"L1PA2,MLT1D,MIR3"				c3p34429480FS	TCTTCTCTCCAGCTAATAATGACC	c3p34429480ES	TCATTCTCAGTAAACTATCGCAAG
chr3	34668860	34669257	34693856	34694253	-	118	397	8	L1HS	"COLO2T,COLO2N"	22	158	CT-rich	LINE:dbRIP			c3p34669058FS	TGAAAGGAGAGAAGAGGAAATTAG	c3p34669058ES	TGGGAGATATACCTAATGCTAGATG
chr3	35108474	35108775	35133470	35133771	+	15	301	2	noL1	COLO2T	0	0	L1PB1				c3p35108624FS	TATTTCATATTATGTTGGCTGTGG	c3p35108624ES	AGGAAATAACCAATATCAGAGCAG
chr3	35631018	35631163	35656014	35656159	+	28	145	5	L1PA4	"COLO2T,COLO2N"	24	148	"MLT1J1-int,L1PA4"				c3p35631090FS	AAAGTCTAGGACCTTTCAGTGATG	c3p35631090ES	GCTGCTATAAAGACACATGCATAC
chr3	35642177	35642366	35667173	35667362	-	21	189	4	noL1	"COLO2T,COLO2N"	23	67	"L1PB3,L3,AluY"				c3p35642271FS	AGTCCATTATATAACTCTGCCTGC	c3p35642271ES	AGGAATTAGTTGACAAAGAGGAAG
chr3	36038572	36038714	36063568	36063710	-	18	142	2	L1PA4	"COLO2T,COLO2N"	14	142	L1M6				c3p36038643FS	AATCAAGAGAGACATTGATTCAGG	c3p36038643ES	TGTTAAATGATGAGTTAATGGGTG
chr3	36629962	36630139	36654958	36655135	+	856	177	15	L1PA4	"COLO2T,COLO2N"	697	234					c3p36630050FS	CTGCTCTCTCTCTTTGTTAATTCC	c3p36630050ES	AACACTGCATGTTCTCACTCATAG
chr3	38201391	38201491	38226387	38226487	-	23	100	7	noL1	"COLO2T,COLO2N"	22	103	AluSx		"OSR1,OXSR1"		c3p38201441FS	GATAAAAGAAGTCGATAAACTGCG	c3p38201441ES	GTTTTAATAGAGACAGGGTTTTGC
chr3	38601050	38601342	38626046	38626338	+	3868	292	18	noL1	"COLO2T,COLO2N"	3851	288	"AluSq2,A-rich"	"LINE:Beck,Ewing,Iskow,Stewart"	SCN5A		c3p38601196FS	TATCAACTCACCATTCACTCATTC	c3p38601196ES	AAAGATTTCCTTGATTTTCCTAGC
chr3	39086891	39087244	39111887	39112240	-	18	353	5	L1PA3	"COLO2T,COLO2N"	26	196	L1PA3		"WDR48,KIAA1449"		c3p39087067FS	ACATTTCAAAGAAAAACATTTTGG	c3p39087067ES	ATGATGAGTTCATGTCCTTTGTAG
chr3	39600654	39600883	39625650	39625879	-	11	229	4	L1PA2	"COLO2T,COLO2N"	4	229	"L1PA2,(T)n,LTR34"				c3p39600768FS	GTAGGATAGGCAGAAGAATGATTG	c3p39600768ES	CAAATGTCCAACAATGATAGACTG
chr3	40051693	40052007	40076689	40077003	+	120	314	6	L1PA4	"COLO2T,COLO2N"	179	317	L1PA4		"slac2-c,MYRIP"		c3p40051850FS	CATTCATTTCTTGGTTCCTATACC	c3p40051850ES	CATTCTCAGTAAACTATCGCACAG
chr3	40057436	40057661	40082432	40082657	+	952	225	28	L1HS	"COLO2T,COLO2N"	851	232	"L1HS,L1MC4"	LINE:dbRIP	"slac2-c,MYRIP"		c3p40057548FS	ACTAGGTGAGGGTTTTACATTCTG	c3p40057548ES	GATGAGTTCATATCCTTTGTAGGG
chr3	40776560	40776676	40801556	40801672	+	150	116	3	L1PA3	"COLO2T,COLO2N"	143	219	L1MA2				c3p40776618FS	TACTGGGAGACTTTTATTTATGGC	c3p40776618ES	TCATTCTCAGTAAACTATCGCAAG
chr3	40918776	40918907	40943772	40943903	-	34	131	2	L1PA3	"COLO2T,COLO2N"	24	119	"L1PA3,AT_rich"				c3p40918841FS	CACATATTACAGGGAATGAGACTG	c3p40918841ES	CAAATGTCCAACAATGATAGACTG
chr3	41394868	41395357	41419864	41420353	+	128	489	3	L1PA3	"COLO2T,COLO2N"	190	489	"L1PA3,L1PA5,(TAAAA)n,L1PA7"		ULK4		c3p41395112FS	GTTTTCTGTTCCTGTGTTAGTTTG	c3p41395112ES	CTCACTTATAGGTGGGAATTGAAC
chr3	41403778	41404151	41428774	41429147	-	13	373	4	L1PA4	"COLO2T,COLO2N"	11	65	"L1PA4,L1MA5A"		ULK4		c3p41403964FS	TATCTCAGGAATATCTCTTCAGGG	c3p41403964ES	AACTAGAAATACCATTTGACCCAG
chr3	41796442	41796955	41821438	41821951	+	20968	513	41	L1HS	"COLO2T,COLO2N"	19239	515	"LTR87,AluJb,L1HS,AT_rich"	LINE:dbRIP	ULK4		c3p41796698FS	CTGAACAAACTGACAGAAAATGTG	c3p41796698ES	TCATTCTCAGTAAACTATCGCAAG
chr3	42251151	42251273	42276147	42276269	-	63	122	5	noL1	"COLO2T,COLO2N"	61	138					c3p42251212FS	CTTCCGTTATCCTCTTTCAAAAC	c3p42251212ES	TTGTTGAGAGTGAGAGTGAGAGAG
chr3	43056922	43057257	43081918	43082253	-	333	335	13	L1PA3	"COLO2T,COLO2N"	784	345	"L1PA3,L1M5"		"DKFZp434B172,AK311069,C3orf41"		c3p43057089FS	TCTGGAAGTTATTTTGGAGTAAGG	c3p43057089ES	TCATTCTCAGTAAACTATCGCAAG
chr3	46395435	46395565	46420431	46420561	-	73	130	10	L1PA2	"COLO2T,COLO2N"	129	129	L1PA2				c3p46395500FS	TCAGCTCTTTAATGTTTGTCTCTG	c3p46395500ES	CAATAATAGAGAAAGGAGAGTGCG
chr3	46799355	46799600	46824351	46824596	-	28808	245	18	L1HS	"COLO2T,COLO2N"	44895	295	L1MC2		"TESSP5,TSP50"		c3p46799477FS	TAGCTCAAAATGTATCACAGATGC	c3p46799477ES	GATGAGTTCATATCCTTTGTAGGG
chr3	47044022	47044332	47069018	47069328	+	16904	310	20	L1PA7	"COLO2T,COLO2N"	25836	187	"L1PA4,L1MB7,AluY"		"SETD2,KIAA1732"		c3p47044177FS	AGTTTAGTGCTGCTTAATGTCCAG	c3p47044177ES	AAAAAGAGAACACATGGACACAG
chr3	54234002	54234303	54258962	54259263	-	132	301	4	L1PA5	"COLO2T,COLO2N"	173	318	"L1MEg,L1PA5"		CACNA2D3		c3p54234152FS	GTTGACTAAAATGTTGCTATGCAG	c3p54234152ES	TAGGAAACTGCAAAACAGATACAG
chr3	54402746	54403449	54427706	54428409	-	81562	703	55	L1HS	"COLO2T,COLO2N"	85802	703	"L1HS,L1MA6"		CACNA2D3		c3p54403097FS	GTAGCTGCTCTACCTACCCCTC	c3p54403097ES	TAATGCTAGATGACACGTTAGTGG
chr3	54467631	54467899	54492591	54492859	-	44	268	9	L1PA3	"COLO2T,COLO2N"	38	380	"L1PA3,L1MA5"		CACNA2D3		c3p54467765FS	ATTTCACTTCAATGTGTAGCACTC	c3p54467765ES	ATGATGTGTTCATGTCCTTTGTAG
chr3	54813680	54814381	54838640	54839341	+	58	701	4	noL1	"COLO2T,COLO2N"	67	78	L1PA3		CACNA2D3		c3p54814030FS	TGATGGTAGTTTGTATTTCTGTGG	c3p54814030ES	TTCATAAAGCAAGTCTTGAGTGAC
chr3	55151487	55151602	55176447	55176562	+	17	115	2	L1PA2	"COLO2T,COLO2N"	1	65	L1M5				c3p55151544FS	ACATTCTTTTTAGAGCAAGACCTG	c3p55151544ES	TCATTCTCAGTAAACTATCGCAAG
chr3	55763647	55763821	55788607	55788781	+	2257	174	12	noL1	"COLO2T,COLO2N"	3897	196		"LINE:Ewing,Stewart"	"ERC2,KIAA0378"		c3p55763734FS	GGGAAATAAATAAATGAAGTGCAG	c3p55763734ES	TTCAGATAAATGCAAAAAGAACTG
chr3	57037729	57037904	57062689	57062864	+	37	175	5	L1PA2	"COLO2T,COLO2N"	27	542	"L1PA2,MIRb"		ARHGEF3		c3p57037816FS	GGCCCAAGTAGATGTTATTTACAG	c3p57037816ES	CAAATGTCCAACAATGATAGACTG
chr3	57125323	57125975	57150283	57150935	-	672	652	5	noL1	"COLO2T,COLO2N"	386	652	"AT_rich,AluSp,MIR3"		IL17RD		c3p57125649FS	CATACACACACTAAAACACAACCC	c3p57125649ES	AATGACAACAACAACCATTATTTG
chr3	58748253	58748561	58773213	58773521	+	20	308	2	L1PA2	"COLO2T,COLO2N"	26	389	"L1PA2,L1PA7"		C3orf67		c3p58748407FS	TAGGTGTTTCTCCTAATGCTATCC	c3p58748407ES	TAACAGCTCTAGCACAGAGTAACG
chr3	58809031	58809213	58833991	58834173	+	16	182	3	L1PA2	"COLO2T,COLO2N"	10	172			"C3orf67,AK090895"		c3p58809122FS	AAATGATGATCTTATTTTTGAGCC	c3p58809122ES	TCATTCTCAGTAAACTATCGCAAG
chr3	58969612	58969882	58994572	58994842	+	37	270	2	L1PA4	"COLO2T,COLO2N"	80	66	"L1PBb,L1PA4"		"C3orf67,AK090895"		c3p58969747FS	TTACCTTTCTTTGGTATCTCCTTG	c3p58969747ES	CATCATTCTCAGCAAAACTATCAC
chr3	59828010	59828193	59852970	59853153	+	381	183	7	noL1	"COLO2T,COLO2N"	7655	184		"LINE:dbRIP,Ewing,Iskow,Stewart"	FHIT		c3p59828101FS	AGTGAAACTCTCAAAAGTCTAGGG	c3p59828101ES	TACAACACTTAAAGGTGGTCACAG
chr3	60057743	60058416	60082703	60083376	-	10	673	3	L1PA4	"COLO2T,COLO2N"	9	673	"FLAM_C,Tigger2a"		FHIT		c3p60058079FS	ACCAGAGAGTAGGAAAAGCTCAG	c3p60058079ES	AAGTGGAAATGGATCATTGTAAAG
chr3	61077128	61077394	61102088	61102354	-	2122	266	14	noL1	"COLO2T,COLO2N"	1734	137			FHIT		c3p61077261FS	ACATTTACAACAGGTAACTAGCCC	c3p61077261ES	TCAATTTGCACACTGATATTTTTC
chr3	62807795	62808048	62832755	62833008	-	43	253	7	L1PA2	"COLO2T,COLO2N"	49	255	"L1PA2,L1MC5"		CADPS		c3p62807921FS	ATCTTGGTTCATTACAACTTCCAC	c3p62807921ES	TCATTCTCAGTAAACTATCGCAAG
chr3	63116498	63116955	63141458	63141915	+	35	457	5	L1PA2	"COLO2T,COLO2N"	44	66	"(TAAA)n,L1PA2"				c3p63116726FS	ATTAGAGACTGGCCATTAGACAAG	c3p63116726ES	TCATTCTCAGTAAACTATCGCAAG
chr3	63172284	63172481	63197244	63197441	-	1774	197	9	L1PA2	"COLO2T,COLO2N"	1273	289	L1PA2				c3p63172382FS	TTTTTAGTAGAGATGGGTTTCACC	c3p63172382ES	AAAATGAAGAGTTCATGTCCTTTG
chr3	63340116	63340686	63365076	63365646	-	2267	570	23	L1PA5	"COLO2T,COLO2N"	1207	412	"L1MDa,L1PA5"		SYNPR		c3p63340401FS	GCCTGTCTTTGTATGTGTTCATAG	c3p63340401ES	TAGACTGGATTAAGAAAATGTGGC
chr3	63386490	63386831	63411450	63411791	-	10	341	2	noL1	"COLO2T,COLO2N"	8	65	"MIR,AluSx3"		SYNPR		c3p63386660FS	ATGTAGGAATAAGATTCAAGGTGC	c3p63386660ES	ACATAAAGTAGGGAAAGAATGCAG
chr3	63552591	63552984	63577551	63577944	+	70	393	9	L1PA2	"COLO2T,COLO2N"	113	299	"L1PA2,MLT1C"		SYNPR		c3p63552787FS	CATCCACTTAACTTAGTTTCTCCC	c3p63552787ES	TCATTCTCAGTAAACTATCGCAAG
chr3	63612029	63612363	63636989	63637323	+	71	334	3	L1PA4	"COLO2T,COLO2N"	96	376	"AT_rich,L1PA4"				c3p63612196FS	TGGACAGAGTAAATATAGGAAGGC	c3p63612196ES	AACAATGAGAACACATGGACATAG
chr3	65814648	65814908	65839608	65839868	+	29	260	3	noL1	"COLO2T,COLO2N"	93	260	AluSx		MAGI1		c3p65814778FS	TATTTTAATCACATGGAAATGGTG	c3p65814778ES	AAATGATTTCAAAATGCTTCTCTC
chr3	66889507	66889707	66806817	66807017	+	10	200	2	L1PA7	COLO2T	0	0	L1PA7				c3p66889607FS	AGGGTAACTACTGTGAAGAGTTCG	c3p66889607ES	AGACATAGGAAGATAAAATGCCAC
chr3	67579416	67579586	67496726	67496896	+	202	170	12	noL1	"COLO2T,COLO2N"	312	170	"(A)n,AluSx3,L1M4"		"SUCLG2,DKFZp586M2023"		c3p67579501FS	TTAATGACCAACATTCTTTGAGTG	c3p67579501ES	ACACAGACATAATCAGATGTGACC
chr3	67876127	67876286	67793437	67793596	-	139	159	2	L1PA4	"COLO2T,COLO2N"	180	178	L1MA5		"AL832184,BC038210"		c3p67876206FS	TGAAATCCTTGTACATTTTTGATG	c3p67876206ES	CTTGATTGTAAAGTTTGAATTCCC
chr3	67947177	67947439	67864487	67864749	-	15	262	3	L1PA2	"COLO2T,COLO2N"	6	71	L1PA2		AL832184		c3p67947308FS	ATCTTACTTTCTGTCATTTCGGAG	c3p67947308ES	ATAGACTGGATGAAGAAAATGTGG
chr3	68035877	68036157	67953187	67953467	-	11	280	3	L1PA3	"COLO2T,COLO2N"	16	196	MIRb		AL832184		c3p68036017FS	CTATGGGCTCTTTGTTTTCAGTAG	c3p68036017ES	AATGCTAGATGACAAGTTAGTGGG
chr3	69919559	69920023	69836869	69837333	-	129	464	7	L1PA4	"COLO2T,COLO2N"	908	464	"L1PA4,MIRb"		MITF		c3p69919791FS	GATTCTCTTTCTTTCCACTTTTTG	c3p69919791ES	TACTCAAAGTATCGTGGCTTCTC
chr3	75087759	75088235	75005069	75005545	+	291	476	18	L1HS	"COLO2T,COLO2N"	2571	317	"L1HS,L1MD"				c3p75087997FS	AAAAACAGTTCTCCCTACATATCG	c3p75087997ES	TCATTCTCAGTAAACTATCGCAAG
chr3	75184033	75184191	75101343	75101501	+	5030	158	12	noL1	"COLO2T,COLO2N"	2204	142	MIR	"LINE:Ewing,Iskow,Stewart"			c3p75184112FS	TCTTCAAAACAGTTGCAAAAATAG	c3p75184112ES	TGTTAACTTCCTGGAAAAGGTTAG
chr3	77895212	77895573	77812522	77812883	-	60106	361	36	L1HS	"COLO2T,COLO2N"	42675	571	"MLT1E2,L1HS"				c3p77895392FS	AGCCATCTGTACTTTAAGACAACC	c3p77895392ES	TCATTCTCAGTAAACTATCGCAAG
chr3	78813138	78813451	78730448	78730761	+	15	313	2	L1PA3	"COLO2T,COLO2N"	10	313	"L1PA3,L2c"		"ROBO1,robo1"		c3p78813294FS	TATTTTGAGACTGAGTCGCCG	c3p78813294ES	TCATTCTCAGTAAACTATCGCAAG
chr3	79266832	79267215	79184142	79184525	+	78723	383	41	L1HS	"COLO2T,COLO2N"	60267	403	"L1MA8,L1HS,L1MC4"		ROBO1		c3p79267023FS	TCCCAAGATAGTTTTTATTCAACC	c3p79267023ES	TCATTCTCAGTAAACTATCGCAAG
chr3	81183013	81183280	81100323	81100590	-	1253	267	23	L1PA2	"COLO2T,COLO2N"	1336	374	"L1MA9,L1PA2,(TTTTTA)n"				c3p81183146FS	AGCCTTTTAGTTTGGTATACTCCC	c3p81183146ES	TCATTCTCAGTAAACTATCGCAAG
chr3	81534283	81534398	81451593	81451708	-	15	115	4	L1PA4	"COLO2T,COLO2N"	24	122	L1MA9				c3p81534340FS	CACTATATATGTAGGTGTCTGTGCG	c3p81534340ES	TAGACTGGATTAAGAAAATTTGGC
chr3	81760787	81760922	81678097	81678232	-	41	135	5	L1HS	"COLO2T,COLO2N"	116	260	"L1HS,BLACKJACK"		GBE1		c3p81760854FS	TTCTTTGAAAATTCATGACAAAAC	c3p81760854ES	TAGACTGGATTAAGAAAATGTGGC
chr3	81853026	81853350	81770336	81770660	+	3065	324	14	L1HS	"COLO2T,COLO2N"	2637	326	L1HS	LINE:dbRIP	GBE1		c3p81853188FS	TCTACTCTTACAAGCATCTCATGG	c3p81853188ES	GATGAGTTCATATCCTTTGTAGGG
chr3	81914947	81915079	81832257	81832389	-	16	132	2	L1PA4	"COLO2T,COLO2N"	1	65	L2b				c3p81915013FS	AAATTACCTCCTACTGGGTTCTTC	c3p81915013ES	TAGACTGGATTAAGAAAATGTGGC
chr3	82464910	82465014	82382220	82382324	-	11	104	2	L1PA2	COLO2T	0	0	"L1PA2,(TTA)n"		BC031255		c3p82464962FS	AGCCATTAGAAGCATAAAGACAAC	c3p82464962ES	CAAATGTCCAACAATGATAGACTG
chr3	82792590	82792820	82709900	82710130	-	32	230	3	noL1	"COLO2T,COLO2N"	44	181	L1PA8	"LINE:dbRIP,Ewing"			c3p82792705FS	CTATGTGAGCTCTCTTTTGTTTCC	c3p82792705ES	TAAACATAACCAATGACAAAAACC
chr3	82999408	82999643	82916718	82916953	+	121	235	7	L1PA2	"COLO2T,COLO2N"	51	233	"L1M4c,L1PA2"				c3p82999525FS	CAGTGGCATACAAAAACTGTAGTC	c3p82999525ES	TCATTCTCAGTAAACTATCGCAAG
chr3	83019569	83019967	82936879	82937277	+	211	398	17	L1HS	"COLO2T,COLO2N"	189	400	"MLT1B-int,L1HS,(A)n"	LINE:dbRIP			c3p83019768FS	TTATTCTTCTTGTCCTCACTTTGC	c3p83019768ES	GAACAATGAGATCACATGGACAC
chr3	83046329	83046848	82963639	82964158	+	23	519	9	L1PA3	"COLO2T,COLO2N"	95	508	"Tigger1,L1PA3"				c3p83046588FS	TTTTAGTAGAGACGGGTTTCACC	c3p83046588ES	CAGTAATGAGATAAATCATGCTGC
chr3	83169313	83169715	83086623	83087025	-	340039	402	125	L1HS	"COLO2T,COLO2N"	383063	372	"L1HS,L2"				c3p83169514FS	AATAATACAAAATGGGGAAAAATG	c3p83169514ES	TCATTCTCAGTAAACTATCGCAAG
chr3	83244106	83244322	83161416	83161632	+	15	216	3	noL1	"COLO2T,COLO2N"	3	160	L1PA7				c3p83244214FS	TTAAAAACAACATGAAAATTGACG	c3p83244214ES	TAAAAAGTCAGGAAACAACAGATG
chr3	83935430	83935877	83852740	83853187	-	864	447	8	L1HS	"COLO2T,COLO2N"	250	483	L1HS	LINE:dbRIP			c3p83935653FS	CTTTAAAGCCTCTCAAAATCAATG	c3p83935653ES	TCATTCTCAGTAAACTATCGCAAG
chr3	84553944	84554120	84471254	84471430	+	12	176	2	L1PA3	"COLO2T,COLO2N"	20	81	"L1PA3,AT_rich"				c3p84554032FS	GCATTAACAACTGCATTACAAAAC	c3p84554032ES	GTTTATTGCAGCATTATTCACAAC
chr3	84675629	84675976	84592939	84593286	-	125202	347	54	noL1	"COLO2T,COLO2N"	159806	347	L1PA16	LINE:Ewing			c3p84675802FS	GTTGATAGTTTCTTTTGCTGTGTG	c3p84675802ES	GATGATAGAATCTGTACCCCAAAC
chr3	84785618	84785829	84702928	84703139	+	14	211	2	L1PA2	"COLO2T,COLO2N"	4	65	"L1MA9,L1PA2"		BC068246		c3p84785723FS	ACGCTTTTTCAGTTTGATAGTCTC	c3p84785723ES	CAAATTGATCTACAACTTCAATGC
chr3	85621522	85621642	85538832	85538952	+	110	120	7	L1PA2	"COLO2T,COLO2N"	116	122	(GA)n		CADM2		c3p85621582FS	CAGTTTCTTCTTGTGTGTAACAGG	c3p85621582ES	TTAACTTTGTTCCGATGTGATTAG
chr3	85659241	85659580	85576551	85576890	+	5496	339	8	noL1	"COLO2T,COLO2N"	4181	308	AluJr	"LINE:Ewing,Iskow,Stewart"	CADM2		c3p85659410FS	AAAAGTGATCTTTGTCCCTAAGTG	c3p85659410ES	ATATTTAAAAATGAGCTGGGTGAG
chr3	86534765	86535055	86452075	86452365	-	14830	290	37	L1PA4	"COLO2T,COLO2N"	23581	501	"AluJo,L1PA4"				c3p86534910FS	AAGCAGGCTTAAATAATGTGAAAG	c3p86534910ES	GCAGGTCAGTCAATATATTTCTCC
chr3	87636235	87636389	87553545	87553699	-	19	154	5	L1PA3	"COLO2T,COLO2N"	5	70	"L1PA3,(T)n"				c3p87636312FS	AACTCCTTGGTAATTGTTAGTTGC	c3p87636312ES	CAAATGTCCAACAATGATAGACTG
chr3	88014656	88015043	87931966	87932353	+	41	387	7	L1PA3	"COLO2T,COLO2N"	63	387	"L1PA3,L1PA6"				c3p88014849FS	TTTATCTACCTTTGGTCTTTGAGG	c3p88014849ES	ATGATGAGTTCATGTCCTTTGTAG
chr3	89119417	89120111	89036727	89037421	+	18	694	7	noL1	"COLO2T,COLO2N"	15	692	"L1ME5,AluSx1"				c3p89119764FS	ATGACTACTGGAGCCTTTTATTTG	c3p89119764ES	AAATAGAAAAATTAGCCAGGTGTG
chr3	89368517	89368712	89285827	89286022	+	11	195	2	L1PA3	"COLO2T,COLO2N"	7	65	"L1PA3,AT_rich"		EPHA3		c3p89368614FS	TTTTTAGTAGAGACAGGGTTTTGC	c3p89368614ES	CAAATGACATTAAAACTGTGTACG
chr3	89401341	89401501	89318651	89318811	-	76	160	4	L1PA2	"COLO2T,COLO2N"	48	215	"AluJr,L1PA2"		EPHA3		c3p89401421FS	TAATGTATATCATGTGCAAGACCC	c3p89401421ES	TCTAAAGATAACCCAACTCAGACC
chr3	89477367	89477516	89394677	89394826	-	48	149	8	L1PA2	"COLO2T,COLO2N"	63	198	"L1PA2,L1MC4"		EPHA3		c3p89477441FS	TAATAGAGAATGTATGTGGCCTTG	c3p89477441ES	CAAATGTCCAACAATGATAGACTG
chr3	89502510	89502615	89419820	89419925	+	38	105	2	L1PA3	"COLO2T,COLO2N"	8	65	AT_rich		EPHA3		c3p89502562FS	ATGACTATACAAAGCTGATTTCCC	c3p89502562ES	CAAATGTCCAACAATGATAGACTG
chr3	89592252	89592724	89509562	89510034	-	194	472	9	L1HS	"COLO2T,COLO2N"	300	472	"L1HS,AT_rich"	LINE:dbRIP	EPHA3		c3p89592488FS	GTGTGTGCATATGTGTGTAAAATG	c3p89592488ES	TCATTCTCAGTAAACTATCGCAAG
chr3	89645070	89645507	89562380	89562817	-	16	437	7	noL1	"COLO2T,COLO2N"	20	73	"L1M4c,L1PA13,L1M4"				c3p89645288FS	GATGTGTAAGTATTGCTTTATGCC	c3p89645288ES	CAGAATTAGTAAACATGCAAATGG
chr3	90000605	90000933	89917915	89918243	-	23	328	12	L1PA8A	"COLO2T,COLO2N"	99	327	"L1PA2,AT_rich,MIRc"				c3p90000769FS	CCATCTGACAAAGGTCTAATATCC	c3p90000769ES	TCATTCTCAGTAAACTATCGCAAG
chr3	90300961	90301455	90218271	90218765	-	7799	494	11	L1HS	"COLO2T,COLO2N"	11059	492	"(TATAA)n,L1HS,(T)n"				c3p90301208FS	AAAGACTTTACCAGAATGCTATGG	c3p90301208ES	TCATTCTCAGTAAACTATCGCAAG
chr3	90316515	90317247	90233825	90234557	-	1222	732	7	noL1	"COLO2T,COLO2N"	1246	728	"U6,MLT1D,MER5C,AT_rich,AluY,LTR16A2"				c3p90316881FS	TACTCAAAGTGATTTAGTGTTCGC	c3p90316881ES	AGGAGACAGAGCTTGCAGTGAG
chr3	90400229	90400630	90317539	90317940	+	30	401	2	L1PA3	"COLO2T,COLO2N"	23	71	ALR/Alpha				c3p90400429FS	GTAGATTCTGCAGAGGGATATTTG	c3p90400429ES	ACACCACATATTCTCACTCATAGG
chr3	90471886	90472325	90389196	90389635	+	25679	439	35	L1HS	"COLO2T,COLO2N"	40137	472	"L1HS,ALR/Alpha"				c3p90472105FS	CTGTAGAGGGATATTTCTGATTGG	c3p90472105ES	GATGAGTTCATATCCTTTGTAGGG
chr3	90532868	90533617	90450178	90450927	+	91	749	3	noL1	"COLO2T,COLO2N"	801	75	ALR/Alpha				c3p90533242FS	GAACAGTTCTGAAACACTCTTTTG	c3p90533242ES	GAGCTGAATGAACACATTACAAAG
chr3	94992958	94993149	93510268	93510459	+	228	191	9	L1HS	"COLO2T,COLO2N"	120	355	"L1HS,ALR/Alpha"				c3p94993053FS	AATTTTGAAACATTCCTTTTGAAG	c3p94993053ES	TCATTCTCAGTAAACTATCGCAAG
chr3	96271045	96271272	94788355	94788582	+	50	227	2	L1PA4	"COLO2T,COLO2N"	16	65	L1MB1		BC063131		c3p96271158FS	CTTTGATAATTTTGCTTTGGTAGG	c3p96271158ES	ATGATGAGTTCATGTCCTTTGTAG
chr3	98743245	98743911	97260555	97261221	-	10	666	3	L1PA16	"COLO2T,COLO2N"	7	442	"L1PA4,MLT2A1,(T)n,L1MC4a,L1PA16"		"DKFZp434C1418,EPHA6"		c3p98743578FS	ATTTTGTAGACTGTCCCTCAGTTC	c3p98743578ES	TAGACTGGATTAAGAAAATGTGGC
chr3	99667276	99667482	98184586	98184792	-	287	206	10	L1PA2	"COLO2T,COLO2N"	385	216	L1PA2				c3p99667379FS	TGGTTATACCACCACTTTTAGATG	c3p99667379ES	TCATTCTCAGTAAACTATCGCAAG
chr3	100636358	100636731	99153668	99154041	-	12	373	5	L1PA2	"COLO2T,COLO2N"	21	406	"AluSc8,HAL1,L1PA2"				c3p100636544FS	AAACAGATATGGATATGGGACATC	c3p100636544ES	CTGTGGAAATTGTGATTGATAGAG
chr3	100716023	100716220	99233333	99233530	+	12	197	2	L1PA4	"COLO2T,COLO2N"	1	65	L1PA4				c3p100716121FS	AATTGATCAACAGGAGGAATTATC	c3p100716121ES	AAGTTAACAGTCTTATGGGCTCTG
chr3	100926589	100927012	99443899	99444322	-	22	423	6	L1PA4	"COLO2T,COLO2N"	20	529	"L1PA4,MIRb"		COL8A1		c3p100926800FS	TTCAACAAATATTTTCTAGGCACC	c3p100926800ES	CTCACTTATAGGTGGGAATTGAAC
chr3	100934627	100934733	99451937	99452043	-	216	106	10	L1PA3	"COLO2T,COLO2N"	94	105	"L1PA3,THE1C-int"		COL8A1		c3p100934680FS	AAGTCTCATCTAAGACAAGGCAAG	c3p100934680ES	ATTCACAATAGCAAAGACTTGGAC
chr3	101717151	101717341	100234461	100234651	+	11	190	4	L1PA3	"COLO2T,COLO2N"	16	129	"L1PA3,L1MA4"		TMEM45A		c3p101717246FS	GGAGCTCATTAGATAAAAGCAGAG	c3p101717246ES	CAAATGTCCAACAATGATAGACTG
chr3	101751684	101751862	100268994	100269172	+	40	178	4	L1PA2	"COLO2T,COLO2N"	17	165	L1PA2		TMEM45A		c3p101751773FS	AACTCAGGTGCTAGGTGTTAATTC	c3p101751773ES	TTGTTCTTGCGATAGTTTACTGAG
chr3	102348126	102348268	100865436	100865578	+	4043	142	9	L1PA4	"COLO2T,COLO2N"	2838	143	L1PA4				c3p102348197FS	ATAGAAAGAAACAGGAACCAACAC	c3p102348197ES	CAAATGTCCAACAATGATAGACTG
chr3	102646155	102647174	101163465	101164484	+	18	1019	4	L1PA3	"COLO2T,COLO2N"	12	1019	"L1M2,L1PA3"		SENP7		c3p102646664FS	TTTGTTAGCTCTCTGATTGTTTTG	c3p102646664ES	AAAAACCAAACACCGTATACTCTC
chr3	102998725	102999004	101516035	101516314	-	405	279	12	L1PA2	"COLO2T,COLO2N"	185	278	"L1PA2,MIR"		FAM55C		c3p102998864FS	ACCTTATGTAGGATTTTGAAGTGG	c3p102998864ES	TCATTCTCAGTAAACTATCGCAAG
chr3	103274572	103274700	101791882	101792010	+	207	128	11	L1PA3	"COLO2T,COLO2N"	104	128					c3p103274636FS	TTTGTATCTTTAGTAGAGACGGGG	c3p103274636ES	TGGGAGATATACCTAATGCTAGATG
chr3	103826056	103826171	102343366	102343481	+	49	115	4	L1PA3	"COLO2T,COLO2N"	77	143	"L1PA3,(A)n"				c3p103826113FS	GTTTCCAATCCAGTTCTTTCATAG	c3p103826113ES	ATGATGAGTTCATGTCCTTTGTAG
chr3	103848532	103848778	102365842	102366088	-	332	246	15	L1PA4	"COLO2T,COLO2N"	456	246	"L2c,AT_rich,(TC)n"				c3p103848655FS	CAAGAAATCCACATTATCTTTGTG	c3p103848655ES	AACCATCATTCTCAGCAAACTATC
chr3	104026075	104026385	102543385	102543695	+	288	310	7	noL1	"COLO2T,COLO2N"	286	297	L1PA4				c3p104026230FS	TTGTATAAGGTGTAAGGAAGGGAC	c3p104026230ES	AGGGTATTCATTTAGGAAAAGAGG
chr3	104407780	104408194	102925090	102925504	-	35	414	2	L1PA3	"COLO2T,COLO2N"	5	65	"L1MEd,L1PA3"				c3p104407987FS	ATAAAAATCAGCTTTTAGTGGAGG	c3p104407987ES	AGGGAATATACAGACAAAGCAGTC
chr3	104757523	104758125	103274833	103275435	-	604107	602	53	L1HS	"COLO2T,COLO2N"	646662	451	"(TG)n,L1HS,L1PB3,AT_rich"				c3p104757824FS	TTACATGGATTAATTGTAACGGTG	c3p104757824ES	GAGGGATAGCATTGGGAGATATAC
chr3	104911184	104911410	103428494	103428720	-	398	226	7	L1PA3	"COLO2T,COLO2N"	227	251	MLT1A0				c3p104911297FS	CAGAAGCAATTTAGTTTGAAACAG	c3p104911297ES	TCATTCTCAGTAAACTATCGCAAG
chr3	105829736	105829838	104347046	104347148	+	38	102	7	L1PA5	"COLO2T,COLO2N"	27	97	L1PA5				c3p105829787FS	TCAGCTAGTAAGTGACAGAGATGG	c3p105829787ES	CCACCAATGGATACTTAAAGAAAG
chr3	106153675	106154130	104670985	104671440	-	39	455	3	noL1	COLO2T	0	0					c3p106153902FS	TTAAAATTATCGGTCTTTCCAGAG	c3p106153902ES	TTAGATCTGTGAAACCACAATGAC
chr3	106503473	106503967	105020783	105021277	+	93	494	7	L1PA3	"COLO2T,COLO2N"	167	182	"L1PA3,L1MEg"				c3p106503720FS	TACAATTCTTTTTACTAGCTGCCC	c3p106503720ES	CAAATGTCCAACAATGATAGACTG
chr3	106788435	106788941	105305745	105306251	-	700	506	10	L1HS	"COLO2T,COLO2N"	1566	507	"L1HS,MER65D,AluSx"	LINE:dbRIP			c3p106788688FS	ATTTTTAATAGAAACAGGGTTTCAC	c3p106788688ES	TCATTCTCAGTAAACTATCGCAAG
chr3	107194953	107195184	105712263	105712494	-	301	231	8	L1PA3	"COLO2T,COLO2N"	305	249	"L1MA2,L1PA3"				c3p107195068FS	CAAATTTACCCTTTCACTTTGTTC	c3p107195068ES	TCATCATTCTCAGTAAACTATCGC
chr3	107631576	107631697	106148886	106149007	+	23	121	2	L1PA3	"COLO2T,COLO2N"	10	121	"AluJr,L1PA3,AT_rich"				c3p107631636FS	CCAAAAATTCAAATGAAATAAACC	c3p107631636ES	AATATCGAAAAGCAAAAACAAAAC
chr3	107872869	107873161	106390179	106390471	+	13	292	4	L1PA2	"COLO2T,COLO2N"	13	624	L1M1				c3p107873015FS	TTTGATAGGTTGTATGTGTTCAGG	c3p107873015ES	TCATTCTCAGTAAACTATCGCAAG
chr3	108840261	108840372	107357571	107357682	+	641	111	17	noL1	"COLO2T,COLO2N"	12	112	"(CA)n,AluJb"		BBX		c3p108840316FS	TTTAAATGGAAAATCTTCAGTTCC	c3p108840316ES	AAGTGCTAGAATTATAGGCGTGAG
chr3	109090610	109091187	107607920	107608497	+	176194	577	110	L1HS	"COLO2T,COLO2N"	175916	813	L1HS		LOC285205		c3p109090898FS	GTATATAAAAGCAATTACAGGGGG	c3p109090898ES	AATGCTAGATGACACTTTAGTGGG
chr3	109465184	109465325	107982494	107982635	+	11	141	2	L1PA2	COLO2T	0	0	"L1MB3,L1PA2"				c3p109465254FS	TGTATGATTCCTCTTACATGATGC	c3p109465254ES	ATTATGCACAATAGCAAAGACTTG
chr3	109956902	109957521	108474212	108474831	+	40497	619	45	L1HS	"COLO2T,COLO2N"	27712	554	"(TAAA)n,L1HS"	LINE:Iskow	RETNLB	RETNLB.L	c3p109957211FS	ACAAATCGAAGAAAACTGAAACTC	c3p109957211ES	TAATGCTAGATGACACGTTAGTGG
chr3	110407383	110407697	108924693	108925007	+	786	314	11	L1HS	"COLO2T,COLO2N"	879	332	"L1HS,AluSg"				c3p110407540FS	TAAATTCCAATCTTTTAGAAAGGC	c3p110407540ES	GATGAGTTCATATCCTTTGTAGGG
chr3	111318697	111319101	109836007	109836411	-	32807	404	26	L1HS	"COLO2T,COLO2N"	28884	460	"L2a,L1MC1,AT_rich"				c3p111318899FS	GATTCCTGGTTTGTATGGTAAGAC	c3p111318899ES	TGGGAGATATACCTAATGCTAGATG
chr3	112592321	112592599	111109631	111109909	+	2460	278	16	L1PA3	"COLO2T,COLO2N"	2319	338	L1MA4A				c3p112592460FS	TCATGGTAAATGATACCTCAAATG	c3p112592460ES	TGGAAATCATCATTCTCAGTAAAC
chr3	112757479	112757647	111274789	111274957	-	37	168	5	L1PA2	"COLO2T,COLO2N"	47	168	L1MEf		CD96		c3p112757563FS	TTCCAGAAGTTTGATTATGATGTG	c3p112757563ES	ATGAAATTGGAAATCATCTTTCTC
chr3	112843941	112844635	111361251	111361945	+	10	694	2	noL1	COLO2T	0	0	"AluSg4,L1PB1"		CD96		c3p112844288FS	ATTGAGATGATCATGTGATTTTTG	c3p112844288ES	TAAATTTCTGGAAAAATACAACCC
chr3	113009481	113010095	111526791	111527405	-	18	614	4	L1PA16	"COLO2T,COLO2N"	29	68	"MER5B,L1PA16"		"PHLDB2,PLCXD2"		c3p113009788FS	AAAAAGGAGAAGAAGAAGGAGAAG	c3p113009788ES	TATTTGTCTTCTTGAAGCTGTGAC
chr3	113361443	113361843	111878753	111879153	-	10839	400	30	L1PA3	"COLO2T,COLO2N"	10574	646	"L1PA3,(TTTA)n,L1MA4"		SLC9A10		c3p113361643FS	ATATCTGGGGACTCTGATGTTTAG	c3p113361643ES	TCATTCTCAGTAAACTATCGCAAG
chr3	114679490	114679767	113196800	113197077	+	41	277	4	L1PA3	"COLO2T,COLO2N"	15	120	L1MC4		CCDC52		c3p114679628FS	TTCATCTAATATCAGGAATGAAACC	c3p114679628ES	GATAAGTTCATGTCCTTTGTAGGG
chr3	115475160	115475270	113992470	113992580	-	23	110	2	noL1	"COLO2T,COLO2N"	29	65	L1MA3				c3p115475215FS	AAAACAAAACGAAACAAAAATCAG	c3p115475215ES	AGAAAGATGCAAACAAACCTAGAC
chr3	116513723	116513843	115031033	115031153	-	552	120	7	L1PA3	"COLO2T,COLO2N"	626	120	"L1PA3,L1MB7"				c3p116513783FS	TGGAAACTTTATTGCCATTTTAAC	c3p116513783ES	TCATCATTCTCAGTAAACTATCGC
chr3	116671145	116671349	115188455	115188659	+	13	204	4	L1PA2	"COLO2T,COLO2N"	37	415	"L1PA2,MER68"				c3p116671247FS	ATGCTAACACCTGCTTTCTTTTAG	c3p116671247ES	CAAATGTCCAACAATGATAGACTG
chr3	116871210	116871575	115388520	115388885	-	22909	365	41	L1HS	"COLO2T,COLO2N"	27750	519	"L1HS,(T)n"		GAP43		c3p116871392FS	CTGTCATCATCTTTCTGAAATAGC	c3p116871392ES	ATGATGAGTTCATGTCCTTTGTAG
chr3	117317248	117317620	115834558	115834930	+	1797	372	7	noL1	"COLO2T,COLO2N"	1145	234	HAL1		LSAMP		c3p117317434FS	AGACAAGAGAAGATATTGTACCCG	c3p117317434ES	CAATAAATGGTAGCACTGAGAATG
chr3	117567515	117567940	116084825	116085250	+	40157	425	37	L1HS	"COLO2T,COLO2N"	49226	425	"L1HS,L1P3"		LSAMP		c3p117567727FS	ATAAAAATGCATTACTTCTGAGGC	c3p117567727ES	TTTGTAGGGACATGTATGAAATTG
chr3	117691471	117691868	116208781	116209178	+	7490	397	6	L1PA12	"COLO2T,COLO2N"	13945	397	"AluSq2,L1PREC2"				c3p117691669FS	GAGGTGTTCATAACACATTTTGAG	c3p117691669ES	TTGGGTAAACAATAAAATTAAGGC
chr3	119499589	119499813	118016899	118017123	+	848	224	8	L1PA4	"COLO2T,COLO2N"	1584	342	"L1PA4,ERV3-16A3_I-int"				c3p119499701FS	TTATTAGGAGAAAGGATGAAGTCC	c3p119499701ES	CTTTGTCCCTAACAGATGGAATAC
chr3	120047279	120047932	118564589	118565242	+	18	653	4	L1PA3	"COLO2T,COLO2N"	38	489	"L1PA3,HERV17-int"				c3p120047605FS	AATGGTTAAGCTTACCTGGGG	c3p120047605ES	ATAGACTGGATTAAGAAAACGTGG
chr3	120637066	120637236	119154376	119154546	+	32	170	3	noL1	"COLO2T,COLO2N"	31	167	AT_rich		TMEM39A		c3p120637151FS	CATACTTTTCTTTCAGACCCAAAC	c3p120637151ES	GCATGACATTTACTGCAGAATTAC
chr3	121064021	121064442	119581331	119581752	+	123	421	18	L1HS	"COLO2T,COLO2N"	638	407	"L1HS,(T)n"		GSK3B		c3p121064231FS	AGGTTTGGATCTGAAACAAAATAG	c3p121064231ES	GATGAGTTCATATCCTTTGTAGGG
chr3	121616498	121616690	120133808	120134000	+	124	192	3	noL1	"COLO2T,COLO2N"	138	193	"SVA_F,AT_rich"		FSTL1		c3p121616594FS	CTCATTAATTTATCAGGGACAACC	c3p121616594ES	ACTAAGAAAACTTCTTCTGCCTTG
chr3	121780654	121780760	120297964	120298070	+	14	106	6	L1HS	"COLO2T,COLO2N"	12	87	L1HS				c3p121780707FS	AAAGACAGAGAGTTCTATGCCAAG	c3p121780707ES	GATGAGTTCATATCCTTTGTAGGG
chr3	122238003	122238372	120755313	120755682	-	3744	369	12	L1HS	"COLO2T,COLO2N"	4459	398	"L1HS,L1PB4"		STXBP5L		c3p122238187FS	ACTAAAACTGCAAAGATTAGCTGG	c3p122238187ES	AGTTTGAGGCTTTAGTGAGCTATG
chr3	122290594	122291053	120807904	120808363	+	472	459	10	L1HS	"COLO2T,COLO2N"	141	481	"L1MD2,L1HS"		STXBP5L		c3p122290823FS	GAAAAGAGGATGAGACTGAAAAAG	c3p122290823ES	TCATTCTCAGTAAACTATCGCAAG
chr3	122292201	122292358	120809511	120809668	-	146	157	2	L1PA3	"COLO2T,COLO2N"	108	436	L1PA3		STXBP5L		c3p122292279FS	TCTTAGATAGGGAGAGACACCTTG	c3p122292279ES	TATGCTTATTGTGGCACTATTCAC
chr3	122517225	122517451	121034535	121034761	+	69	226	6	L1PA4	"COLO2T,COLO2N"	67	271	AluSz		STXBP5L		c3p122517338FS	AACTACTTCCTTGTGCCAATTTAC	c3p122517338ES	ATAAAAATGGATGAGTTCATGTCC
chr3	122547338	122547531	121064648	121064841	-	18	193	2	L1PA4	"COLO2T,COLO2N"	4	65	"L1PA4,L1PA6"		STXBP5L		c3p122547434FS	ATAGTGCCACAATAAACATACGTG	c3p122547434ES	CTATGCAACCATAAAAATGATGAG
chr3	122603384	122603842	121120694	121121152	+	343121	458	42	L1HS	"COLO2T,COLO2N"	422357	452	"MER45A,L2a,L1HS"		STXBP5L		c3p122603613FS	TGTGAAATTAAAGTTAGAAAGGGG	c3p122603613ES	TCATTCTCAGTAAACTATCGCAAG
chr3	123864102	123864613	122381412	122381923	-	43	511	6	noL1	"COLO2T,COLO2N"	54	72					c3p123864357FS	CTGTGCTTTCTCCTAGTTTCTCTC	c3p123864357ES	CAAAAAGGACAGTGTTTAAAAAGG
chr3	124807784	124807943	123325094	123325253	-	36	159	4	L1PA3	"COLO2T,COLO2N"	17	112	"HAL1,L1PA3"		BC042384		c3p124807863FS	TATCGAAGAGTCCAGAGTAACCTC	c3p124807863ES	GACACATCCCCTAAGTTCTAATTG
chr3	125073424	125073721	123590734	123591031	+	4768	297	22	noL1	"COLO2T,COLO2N"	4783	307	"MER58A,L1M5"	"LINE:Ewing,Iskow"	MYLK		c3p125073572FS	TAGTGTTAGCATTGAATTGGATTG	c3p125073572ES	AACTACCGAAAATCACTCAAGAAG
chr3	126373415	126373597	124890725	124890907	+	929	182	13	L1HS	"COLO2T,COLO2N"	1130	480	"AluSq2,L1HS,(A)n"		SLC12A8		c3p126373506FS	TTGGTATTTCTTCTTGTTAGGAGG	c3p126373506ES	TCATTCTCAGTAAACTATCGCAAG
chr3	127526201	127526400	126043511	126043710	-	14482	199	37	L1HS	"COLO2T,COLO2N"	11971	165	"L1HS,L1MC4"				c3p127526300FS	GTATCTCATTGTGGTTTTGATTTG	c3p127526300ES	GATGAGTTCATATCCTTTGTAGGG
chr3	128008670	128008812	126525980	126526122	+	20	142	3	L1PA4	"COLO2T,COLO2N"	20	89	"HAL1,L1PA4"		CHCHD6		c3p128008741FS	TTCTCAATCTGGAAGGTCTTATTC	c3p128008741ES	ACTATTCCCAATAGCAAAGACTTG
chr3	128636943	128637100	127154253	127154410	+	21	157	4	L1PA2	"COLO2T,COLO2N"	293	139	"L1M5,L1PA2,AT_rich"				c3p128637021FS	AAGGTGTAACTTGCACACAAAAG	c3p128637021ES	TCATTCTCAGTAAACTATCGCAAG
chr3	130999514	131000075	129516824	129517385	-	15	561	2	noL1	"COLO2T,COLO2N"	90	561	"(A)n,AluSq2"		TMCC1		c3p130999794FS	AAACTTTAAGCAGAAAGAAGGTTG	c3p130999794ES	TTTCACTTACCACTTGTTTCACAC
chr3	131835552	131836033	130352862	130353343	+	7440	481	23	L1HS	"COLO2T,COLO2N"	4145	485	"(TAAA)n,L1HS"		"DKFZp667J1615,COL6A6"		c3p131835792FS	GAGGAAAGATTTATACAGGCACAC	c3p131835792ES	TCATTCTCAGTAAACTATCGCAAG
chr3	132612483	132612896	131129793	131130206	+	845	413	15	L1HS	"COLO2T,COLO2N"	856	316	"L1PB1,L1HS,(A)n"				c3p132612689FS	ATTCAGAGATTTTGTCTTGGTTTG	c3p132612689ES	TCATTCTCAGTAAACTATCGCAAG
chr3	132771557	132771904	131288867	131289214	-	5410	347	13	L1HS	"COLO2T,COLO2N"	2245	765	"L1HS,(TTTA)n,L1M5"		CPNE4		c3p132771730FS	TTTCCTGAGAGAACCTTTAATGAG	c3p132771730ES	GCAACTAGTATTGCAGTCTTTGAG
chr3	133505376	133505583	132022686	132022893	+	25	207	6	noL1	"COLO2T,COLO2N"	33	193	Harlequin-int				c3p133505479FS	GGTTAAGGATTTTTGATAGGAAGG	c3p133505479ES	TTTACAATGCTCTTCCATACAATG
chr3	133961887	133962607	132479197	132479917	-	99	720	6	L1PA2	"COLO2T,COLO2N"	41	721	"L2a,L1PA2"		NCRNA00119		c3p133962247FS	GAATGTATATCTCCAATCTGGACC	c3p133962247ES	AACTAGAAATACCATTTGACCCAG
chr3	133997083	133997199	132514393	132514509	-	109	116	2	L1PA4	"COLO2T,COLO2N"	167	215			NCRNA00119		c3p133997141FS	CTTCACCTTATGAGTCTCCTGTC	c3p133997141ES	AACACCACATGTTCTCACTCATAG
chr3	134008061	134008672	132525371	132525982	-	474802	611	97	L1HS	"COLO2T,COLO2N"	433111	629	"L1HS,L2,LTR81,MLT1H"	LINE:Iskow	NCRNA00119		c3p134008366FS	TCCTAGTCTGAAAGGCTATATGTG	c3p134008366ES	TGGGAGATATACCTAATGCTAGATG
chr3	134147232	134147591	132664542	132664901	-	60503	359	50	L1HS	"COLO2T,COLO2N"	52890	380	L1HS				c3p134147411FS	TGATACAGTATTGAAATGCAAACC	c3p134147411ES	TCATTCTCAGTAAACTATCGCAAG
chr3	136156221	136156683	134673531	134673993	-	1987	462	37	L1HS	"COLO2T,COLO2N"	1476	554	"L1HS,(T)n"	LINE:dbRIP	"EphB1,EPHB1"		c3p136156452FS	AGAATGGTGGATAACAGAGAATTG	c3p136156452ES	TCATTCTCAGTAAACTATCGCAAG
chr3	136313539	136313974	134830849	134831284	-	278	435	8	L1PA4	"COLO2T,COLO2N"	216	418	L1PA4		"EphB1,EPHB1"		c3p136313756FS	TTTTTAGTAGAGATGGGGTTTCAC	c3p136313756ES	TCATTCTCAGCAAACTATCACAAG
chr3	137680408	137680658	136197718	136197968	-	146	250	11	L1HS	"COLO2T,COLO2N"	328	430	"L1HS,MIR"		"STAG1,STAG1 variant protein"		c3p137680533FS	AGTTTCTCTTTGGTGACAAAATTC	c3p137680533ES	GGAATACTATGCAGCCATAAAAAG
chr3	137733396	137733698	136250706	136251008	+	13	302	4	L1PA2	"COLO2T,COLO2N"	56	93	"L1PA2,L1MA4A"		"STAG1,STAG1 variant protein"		c3p137733547FS	TAGAAGAAATAACACCAGTCCTCC	c3p137733547ES	TCATTCTCAGTAAACTATCGCAAG
chr3	138164971	138165282	136682281	136682592	-	110755	311	53	L1HS	"COLO2T,COLO2N"	153639	501	"L1HS,L1MA4A"		"IL20RB,UNQ557"		c3p138165126FS	CTTCTGGAGGTTTTAGAGAATCTG	c3p138165126ES	TCATTCTCAGTAAACTATCGCAAG
chr3	138294945	138295477	136812255	136812787	-	22908	532	75	L1HS	"COLO2T,COLO2N"	23941	528	"T-rich,L1HS,L1ME3C,L1M5"				c3p138295211FS	AACCAGAGTCTTTGGCTTAATATG	c3p138295211ES	TCATTCTCAGTAAACTATCGCAAG
chr3	138510214	138510588	137027524	137027898	-	19	374	5	L1PA3	"COLO2T,COLO2N"	47	374	"L1PA3,L1MC4a"				c3p138510401FS	ATCCTTGCATTTCTTGAATAAAAC	c3p138510401ES	TCATTCTCAGTAAACTATCGCAAG
chr3	138556078	138556291	137073388	137073601	+	13539	213	20	L1HS	"COLO2T,COLO2N"	24877	215	"L1MB8,L1HS"	LINE:dbRIP			c3p138556184FS	AAATGATAAATGCTTGAAGTGATG	c3p138556184ES	GATGAGTTCATATCCTTTGTAGGG
chr3	139106419	139106958	137623729	137624268	+	686086	539	62	L1HS	"COLO2T,COLO2N"	967364	542	"L1HS,L1PREC2"				c3p139106688FS	GGAAGATTCAGAACTAAACTGGTG	c3p139106688ES	TAATGCTAGATGACACGTTAGTGG
chr3	139287861	139288224	137805171	137805534	+	223	363	5	L1PA3	"COLO2T,COLO2N"	210	363			DZIP1L		c3p139288042FS	AAGAAAGAGGTAGCTTTTGTTGG	c3p139288042ES	AATGCTAAATGACAAGTTAATGGG
chr3	139723797	139723897	138241107	138241207	+	149	100	8	noL1	"COLO2T,COLO2N"	477	101	"L1PA4,SVA_B"		CEP70		c3p139723847FS	ATTCAGAGATTCAACTTCTTCCTG	c3p139723847ES	GGAAAAGAAAGAAAGATCAGATTG
chr3	141880359	141880710	140397669	140398020	-	1559	351	8	noL1	COLO2T	0	0	"MIRb,MIRc"		TRIM42		c3p141880534FS	ATACCATCATCACTTTCCACAAG	c3p141880534ES	GTGCTCTTACTACTTCAGACTCCC
chr3	141997448	141997717	140514758	140515027	+	15	269	2	L1PA3	"COLO2T,COLO2N"	35	278	"L1PA3,L1MCa"				c3p141997582FS	ATATTTTCACTCATAAGTGGGAGC	c3p141997582ES	AAAAACATGTAAGCAAGAAGACAG
chr3	143593765	143593915	142111075	142111225	-	22	150	5	L1PA2	"COLO2T,COLO2N"	13	338	"L1PA2,L2b"		XRN1		c3p143593840FS	TGTCCTATAAAGTACTTCCTTGCC	c3p143593840ES	TATTGCAGCAGTATTCACAATAGC
chr3	144603983	144604481	143121293	143121791	-	7317	498	17	noL1	"COLO2T,COLO2N"	10707	499	"L1M4b,L1MEf"	LINE:Ewing	SLC9A9		c3p144604232FS	CTACCTCAACGAATAAAAAGGAAG	c3p144604232ES	CAGTAAGTAAGAGTGGAGCAAATG
chr3	145334470	145334660	143851780	143851970	+	4462	190	11	noL1	"COLO2T,COLO2N"	380	113	"MLT1J,MIRb"				c3p145334565FS	ATTGTACAGAAAAGGGAATTGAAG	c3p145334565ES	TCTTTTAAAGCATATAATCCACCC
chr3	146627456	146627603	145144766	145144913	-	16	147	6	noL1	"COLO2T,COLO2N"	16	147	"L1MA9,L1ME3"				c3p146627529FS	TGTGAAATGATACTCACAATCAAG	c3p146627529ES	ACGGTACTGAAGGAATCCTGTAAC
chr3	147932857	147933270	146450167	146450580	-	2959	413	17	L1PA2	"COLO2T,COLO2N"	2173	339	"L1PA2,(T)n"				c3p147933063FS	TGATTTTTATCTAAGGGAAACCTG	c3p147933063ES	TCATTCTCAGTAAACTATCGCAAG
chr3	148680743	148681082	147198053	147198392	-	33	339	12	L1HS	"COLO2T,COLO2N"	19	225	L1HS				c3p148680912FS	TTACAGGAGGAGAAGAAAGAAAAG	c3p148680912ES	AGACAGAATGGTAAGGCATAGAAC
chr3	148928114	148928331	147445424	147445641	+	24	217	4	L1PA3	"COLO2T,COLO2N"	85	217	L1PA5				c3p148928222FS	TATTGCATAGGTTTTCTTCTAGGG	c3p148928222ES	TGGAAATCATCATTCTCAGTAAAC
chr3	150747654	150748349	149264964	149265659	-	28	695	3	noL1	"COLO2T,COLO2N"	18	68	"T-rich,AluSq2"		WWTR1		c3p150748001FS	GCAGAGAAAAAGAGAAACAAAGTC	c3p150748001ES	ATAATGCCAATTAAATGTTTCTGG
chr3	151693149	151693709	150210459	150211019	-	207	560	18	L1HS	"COLO2T,COLO2N"	379	448	"L2a,L1HS,AluSz,Charlie7a"	LINE:Ewing			c3p151693429FS	CAACTGTAATCCCAGTTTCTCAG	c3p151693429ES	TTCTCAGTAAACTATCGCAAGAAC
chr3	152448196	152448351	150965506	150965661	+	20	155	2	L1PA2	"COLO2T,COLO2N"	6	154	L1PA2		"P2RY14,MED12L"		c3p152448273FS	TAGGTTTTAATTTTCCTTTCCTTG	c3p152448273ES	CGTATGTTTATTGTGGCATTATTC
chr3	152631037	152631195	151148347	151148505	-	23	158	3	noL1	"COLO2T,COLO2N"	22	216		"LINE:Ewing,Iskow,Stewart"	MED12L		c3p152631116FS	AGATGAAAATTAATCCACACACAG	c3p152631116ES	GTAAATTCTCTAGAAAGGCAGCAC
chr3	153794031	153794489	152311341	152311799	-	259	458	8	L1HS	"COLO2T,COLO2N"	1586	458	"MLT1N2,L1HS"	LINE:dbRIP			c3p153794260FS	TGAAAGTAAGGAGAATGGAGAGAG	c3p153794260ES	CCATCATTCTCAGTAAACTATTGC
chr3	154183893	154184374	152701203	152701684	+	579	481	12	noL1	"COLO2T,COLO2N"	224	473	L1PA5	"LINE:Beck,Ewing,Iskow"			c3p154184133FS	ACTGATTTGTGTATGTTGAACCAG	c3p154184133ES	GGACACATTTAAAGCAGTGTGTAG
chr3	155269747	155270271	153787057	153787581	+	11	524	2	noL1	"COLO2T,COLO2N"	11	634	L1PA4		BC038431		c3p155270009FS	AAGTTTTATTTTGGACATCAAAGC	c3p155270009ES	CGTATGTTTATTGTGGCACTATTC
chr3	156115224	156115723	154632530	154633029	+	163872	499	86	L1HS	"COLO2T,COLO2N"	205236	494	"L1HS,L1MA3"	LINE:dbRIP			c3p156115473FS	ATAACGACCACTCTCTTAAACCAC	c3p156115473ES	GAAATTGGAAACCATCATTCTTAG
chr3	156319607	156319952	154836913	154837258	-	12	345	3	L1PA2	"COLO2T,COLO2N"	28	347	L1PA2		MME		c3p156319779FS	AAACCAAACTACAAAATGATCTGG	c3p156319779ES	TCATTCTCAGTAAACTATCGCAAG
chr3	156706731	156706887	155224037	155224193	-	46073	156	22	L1PA2	"COLO2T,COLO2N"	41015	454	"L1PA2,MIRb"		PLCH1		c3p156706809FS	GTAGCTACATTTCCTTTAGCAAGC	c3p156706809ES	AACCCAAATATCCAACAATGATAG
chr3	157542509	157543132	156059815	156060438	-	17511	623	46	L1HS	"COLO2T,COLO2N"	12431	620	"L1HS,MER5B"		KCNAB1		c3p157542820FS	TTTCTATTCTATTCCATTTCACCC	c3p157542820ES	ATTCATTAGAAACACATAGGGAGC
chr3	158071150	158071409	156588456	156588715	-	19	259	2	L1PA3	"COLO2T,COLO2N"	45	259	L1MA4A		LEKR1		c3p158071279FS	CGTCTTTATTTCATCAGTGTTTTG	c3p158071279ES	TCATTCTCAGTAAACTATCGCAAG
chr3	158931277	158931403	157448583	157448709	+	15	126	2	L1PA2	COLO2T	0	0	THE1D				c3p158931340FS	TAGAGGTGTTAAGGTTTGCTTTTC	c3p158931340ES	TCATTCTCAGTAAACTATCGCAAG
chr3	159226141	159226552	157743447	157743858	+	8634	411	16	L1HS	"COLO2T,COLO2N"	17023	356	"L1HS,AT_rich"				c3p159226346FS	ATCTATGAAGGGTGTTGATAATCC	c3p159226346ES	TCATTCTCAGTAAACTATCGCAAG
chr3	160157599	160157750	158674905	158675056	-	11	151	2	L1PA2	"COLO2T,COLO2N"	26	134					c3p160157674FS	ACTTCTACTGACCAGTATCCATGC	c3p160157674ES	TAGACTGGATTAAGAAAATGTGGC
chr3	160295436	160295866	158812742	158813172	-	2703	430	12	L1HS	"COLO2T,COLO2N"	2751	954	"MamRep38,L1HS,AT_rich"		"IQCJ,SCHIP1"		c3p160295651FS	CTTTATTATCCATGTTGGTTGATG	c3p160295651ES	TCATTCTCAGTAAACTATCGCAAG
chr3	160697813	160698130	159215119	159215436	+	30	317	5	L1PA4	"COLO2T,COLO2N"	12	75	MIRb		SCHIP1		c3p160697971FS	AGATTTGCCATGGTTAGTTATTTC	c3p160697971ES	AACACCACATGTTCTCACTCATAG
chr3	163108524	163108934	161625830	161626240	+	12212	410	35	L1HS	"COLO2T,COLO2N"	9503	411	"AluJb,L1HS,MER82,(A)n"				c3p163108729FS	ATCTCTTGTCAGCCACTAATTACC	c3p163108729ES	GATGAGTTCATATCCTTTGTAGGG
chr3	163579306	163579522	162096612	162096828	-	22	216	3	L1PA2	"COLO2T,COLO2N"	33	216	MER34				c3p163579414FS	TGAGTTTAAAAATATTATGCGGAAC	c3p163579414ES	TCATTCTCAGTAAACTATCGCAAG
chr3	164391521	164391736	162908827	162909042	-	18	215	5	L1PA3	"COLO2T,COLO2N"	23	215	"L1MCb,L1PA3"		"BC073807,LOC647107"		c3p164391628FS	TGGCAATTGATATCTGTTTATTTG	c3p164391628ES	GATTGGATTAAGAAAATATGGCAC
chr3	164443392	164443693	162960698	162960999	+	741	301	11	L1HS	"COLO2T,COLO2N"	336	310	L1HS		LOC647107		c3p164443542FS	TTCATAAGTAATAGCATGCTCAGG	c3p164443542ES	TCATTCTCAGTAAACTATCGCAAG
chr3	164960642	164960771	163477948	163478077	-	34	129	5	L1PA3	"COLO2T,COLO2N"	72	390	"L1PA3,L1MA7"				c3p164960706FS	CATGTTGCTGCAAGTAATAGAGTC	c3p164960706ES	ACATGCACATGTATGTTTATTGTG
chr3	166763604	166764365	165280910	165281671	+	24	761	3	noL1	"COLO2T,COLO2N"	23	761	"L1MEg,(T)n,AluSz,AT_rich"				c3p166763984FS	TTTATTCTTTGATGTGGAGTTTTG	c3p166763984ES	CTAGGCTGATCTTGAAATCCTG
chr3	166778811	166779175	165296117	165296481	+	5939	364	27	L1PA3	"COLO2T,COLO2N"	16965	386	"L1ME3A,L1PA3"				c3p166778993FS	TCTCAAAAGTCTGTCTACCATGTG	c3p166778993ES	TGGAAATCATCATTCTCAGTAAAC
chr3	168247290	168247449	166764596	166764755	+	49	159	4	L1PA3	"COLO2T,COLO2N"	133	298	L1PA3				c3p168247369FS	ATTTTAAGAAAACACATTCAACCC	c3p168247369ES	TCATTCTCAGTAAACTATCGCAAG
chr3	168404430	168404772	166921736	166922078	-	1803	342	19	L1HS	"COLO2T,COLO2N"	26	128	"L1HS,(T)n"	LINE:Ewing			c3p168404601FS	AACAGTGAGCCAAAGAAATTCTAC	c3p168404601ES	GATGAGTTCATATCCTTTGTAGGG
chr3	169496942	169497234	168014248	168014540	-	109	292	4	L1PA3	"COLO2T,COLO2N"	85	398	"L1MA8,L1PA3"				c3p169497088FS	TGGGCTAATCGAGGTATATGTTAC	c3p169497088ES	TCATTCTCAGTAAACTATCGCAAG
chr3	169555553	169555693	168072859	168072999	+	40	140	7	L1HS	"COLO2T,COLO2N"	3104	443	L1HS				c3p169555623FS	GGCTAAAATTCTAGTGGAGTTCTG	c3p169555623ES	CAAATGTCCAACAATGATAGACTG
chr3	169964569	169964943	168481875	168482249	-	14	374	3	L1PA3	"COLO2T,COLO2N"	14	332	"L1PA3,L1PREC2"				c3p169964756FS	CACTGTGGTTTTGATTTGTATTTC	c3p169964756ES	AAAAACCAAACACCTCATATTCTC
chr3	170752623	170753201	169269929	169270507	+	207	578	5	noL1	"COLO2T,COLO2N"	47	578	"MIR,L1MB7,MIR3"	"LINE:Ewing,Iskow,Alu:Stewart"	"MDS1,EVI1"		c3p170752912FS	AAATACTGGTCTTACAGAGCTTGC	c3p170752912ES	AAAGAGACCCAAAATGCTACATAC
chr3	170831705	170831981	169349011	169349287	-	73	276	6	L1PA3	"COLO2T,COLO2N"	55	276	"L1PA3,MER113"		"MDS1,EVI1"		c3p170831843FS	CCCCATGTAGAGATAACCTGATAG	c3p170831843ES	TTTCAAGCTCTCTTTTAGTCCTTC
chr3	172274280	172274572	170791586	170791878	-	360	292	4	noL1	"COLO2T,COLO2N"	316	66	L1PA17		"KIAA0551,TNIK"		c3p172274426FS	AATCAACAGAGTAAGGAGACAACC	c3p172274426ES	TATACGCAACAGGTAAATTTTCAG
chr3	172320406	172320849	170837712	170838155	+	37	443	4	L1PA4	COLO2T	0	0	"L1PA4,AluY"		TNIK		c3p172320627FS	AATACAAAAATTAGTCGAGCATGG	c3p172320627ES	AACCATCATTCTCAGCAAACTATC
chr3	174439927	174440103	172957233	172957409	-	12	176	2	L1PA3	"COLO2T,COLO2N"	24	65	"Tigger9a,(TTA)n"				c3p174440015FS	TGGGTGAACATAGTGCTATAAATG	c3p174440015ES	TCATTCTCATTAAACTATCGCAAG
chr3	174646370	174646599	173163676	173163905	-	122	229	8	L1PA4	"COLO2T,COLO2N"	160	194	"L2,L1PA4"		NLGN1		c3p174646484FS	AGATATGTTGGACAGTTTTCTTCC	c3p174646484ES	CATATACACCATGGAATACTACGC
chr3	177160377	177160709	175677683	175678015	-	82298	332	48	noL1	"COLO2T,COLO2N"	94096	331	L1MC4a	"LINE:Ewing,Iskow"			c3p177160543FS	TGAGAAATTTACCTCTTGTTACCC	c3p177160543ES	TAAAGGGACAGCAAAGTATAATCC
chr3	177574019	177574454	176091325	176091760	+	35550	435	55	noL1	"COLO2T,COLO2N"	87697	435	L1MA5A	"LINE:dbRIP,Ewing,Iskow"			c3p177574236FS	TTGTCATTTATTTGTGTTGGAAAC	c3p177574236ES	AGCAGACATTTCTCAAAAGAAGAC
chr3	181310840	181311312	179828146	179828618	-	12	472	3	L1PA2	"COLO2T,COLO2N"	3	68	"L2c,L1PA2,LTR84a"				c3p181311076FS	ACTGCACTGCTCTAACTGTACATC	c3p181311076ES	TGGAAATCATCATTCTCAGTAGAC
chr3	184434859	184435231	182952165	182952537	-	94942	372	39	L1HS	"COLO2T,COLO2N"	82182	479	L1HS		MCF2L2		c3p184435045FS	AATACCAATATGTTTCTACGAGCC	c3p184435045ES	GATGAGTTCATATCCTTTGTAGGG
chr3	187418956	187419657	185936262	185936963	+	78	701	5	noL1	"COLO2T,COLO2N"	102	72	"Charlie8,(A)n,AluSc5,MIR3"		DGKG		c3p187419306FS	CCTTATAGGACTTGACATCCTGG	c3p187419306ES	CATGACTGTAATCCCAGCTACTC
chr3	187854849	187854988	186372155	186372294	+	16	139	3	noL1	"COLO2T,COLO2N"	3	65		"LINE:dbRIP,Ewing,Iskow,Stewart"			c3p187854918FS	TGGTCAGAAAGCTAGAAGAAAAAC	c3p187854918ES	GACCTTTAGTGAAGGCTTGTTG
chr3	188624566	188624855	187141872	187142161	-	552	289	11	L1PA17	"COLO2T,COLO2N"	746	289	L1M5				c3p188624710FS	ATAGGTTCACTAGAAGCCCAAAC	c3p188624710ES	TCATCATTCTCAGTAAACTATCGG
chr3	189068975	189069320	187586281	187586626	+	18235	345	38	L1PA2	"COLO2T,COLO2N"	28201	439	"HAL1,L1PA2"				c3p189069147FS	AATGCTTTACACATACATCTTTGG	c3p189069147ES	GATGAGTTTATGTCCTTTGTAGGG
chr3	189317223	189317983	187834529	187835289	-	60685	760	35	noL1	"COLO2T,COLO2N"	31987	760	"AluSc8,AluJb"	"LINE:dbRIP,Ewing,Iskow,Stewart"			c3p189317603FS	CTACTAGGCTCAAGTGATCAATCC	c3p189317603ES	ATTTAGCACAAAATTTACCTGGAG
chr3	189745702	189745833	188263008	188263139	+	550	131	7	L1HS	"COLO2T,COLO2N"	1061	405	L1HS		LPP		c3p189745767FS	AGAGAAACTAAGGTCCTGACACAC	c3p189745767ES	CAAATGTCCAACAATGATAGACTG
chr3	189793642	189793887	188310948	188311193	-	80	245	9	noL1	"COLO2T,COLO2N"	45	245	"(TG)n,(TC)n"		LPP		c3p189793764FS	GCCTAGCTCTCTCAAAAGTCTAAG	c3p189793764ES	AATGACCTGGATGAGATTAGAGAC
chr3	190721483	190721670	189238789	189238976	+	56	187	6	L1PA3	"COLO2T,COLO2N"	48	401	"L1PA3,L1PA16"				c3p190721576FS	AAACTGTTTTTGATTTGATGGAAG	c3p190721576ES	GATAGACTGGATTAAGAAAATGCG
chr3	190850124	190850320	189367430	189367626	+	31	196	2	L1PA13	"COLO2T,COLO2N"	8	65	L2b		TP63		c3p190850222FS	TATCAGGCTTCCAAGTTCTCTAAG	c3p190850222ES	ATGCAGGAATAGAAAACCAAATAG
chr3	191159540	191159754	189676846	189677060	-	30	214	5	L1PA3	"COLO2T,COLO2N"	18	185	L1PA3		LEPREL1		c3p191159647FS	TTTTTGAGATGGAATTTTGCTC	c3p191159647ES	GCTTGAGGTAAGTTAAGAAGTTGG
chr3	191184667	191184886	189701973	189702192	+	32	219	3	L1PA4	"COLO2T,COLO2N"	32	293	MIR3		LEPREL1		c3p191184776FS	AATCTCCACTAACTTTAGCCTTCC	c3p191184776ES	TTTTAAATAATGAGCTTTCTTGGG
chr3	192310856	192310959	190828162	190828265	+	28	103	3	L1PA2	"COLO2T,COLO2N"	19	82	L1PA2				c3p192310907FS	TAGAAAAGTGCTTAAGTCCAGACC	c3p192310907ES	GAGGATTTGTCAAAGAACAGGTAG
chr3	194836575	194836890	193353881	193354196	-	4310	315	15	noL1	"COLO2T,COLO2N"	5953	338		"LINE:Ewing,Stewart"	OPA1		c3p194836732FS	CGTGTGAATCAGTTTATTTTTCTG	c3p194836732ES	AAGACTGTTAAACCAGTAAGGGTG
chr3	195478575	195479269	193995881	193996575	-	12	694	3	noL1	"COLO2T,COLO2N"	1	65	"AluSg,MIRb,MIRc"				c3p195478922FS	CCTCTGTTACTCACTTCTTTCCTC	c3p195478922ES	AAAATATAAAAATTAGCTGGGCG
chr3	195859120	195859544	194377831	194378255	+	34	424	7	L1PA4	"COLO2T,COLO2N"	8	65	"L1PA4,L3"		LSG1		c3p195859332FS	GCTTTCATATTCCTCATAGACACC	c3p195859332ES	ATGATGAGTTCATGTCCTTTGTAG
chr3	199338505	199338614	197854108	197854217	-	36	109	4	noL1	"COLO2T,COLO2N"	54	109	L1MB3				c3p199338559FS	GGAGGTGTTAGTCCTCTAACTTTG	c3p199338559ES	TAAATGTTCCAACACATGAAAATC
chr4	5431038	5431231	5380137	5380330	-	22	193	3	noL1	"COLO2T,COLO2N"	31	200	"L1MEe,MER5A"		"STK32B,DKFZp762M113"		c4p5431134FS	AGTACCAAGTTGAGACATTCTTCC	c4p5431134ES	CTCTCTCCACAGAGCTTTTTGTC
chr4	8046309	8046771	7995409	7995871	-	18838	462	33	L1HS	"COLO2T,COLO2N"	20311	411	"AluJr,L1HS,MER102a"	LINE:dbRIP	"KIAA1808,ABLIM2"		c4p8046540FS	CTGTAATCTTAGAGCTTTGGGAGG	c4p8046540ES	TCATTCTCAGTAAACTATCGCAAG
chr4	10687683	10687928	11078585	11078830	-	181	245	3	L1PA3	"COLO2T,COLO2N"	6	151	L1MEd				c4p10687805FS	GTTGTCATGAGGTCTCAGTAAGTG	c4p10687805ES	TCATTCTCAGTAAACTATCGCAAG
chr4	10754217	10754621	11145119	11145523	-	13	404	2	L1PA3	"COLO2T,COLO2N"	47	164	"L1PA3,LTR16B1"				c4p10754419FS	TAATAACGCCTAACAGACTAAGCC	c4p10754419ES	TCAGGGATCTAGAACTGGAAATAC
chr4	11874598	11874729	12265500	12265631	-	11	131	2	L1PA4	COLO2T	0	0					c4p11874663FS	ATCCAATATATAATTTGCAGGTGG	c4p11874663ES	ATAGACTGGATGAAGAAAATGTGG
chr4	11957732	11957941	12348634	12348843	+	77	209	9	L1PA2	"COLO2T,COLO2N"	139	78	"L1PA2,MSTA"				c4p11957836FS	AAAGACAGAGACCTAGCACATTTC	c4p11957836ES	CAAATGTCCAACAATGATAGACTG
chr4	14081669	14081845	14472571	14472747	-	15	176	3	L1PA4	"COLO2T,COLO2N"	4	206	MIR		BC070495	BC070495.O	c4p14081757FS	AGAAGGTGAACAAAATTAAAATGG	c4p14081757ES	TTGATGAGTTCATGTCCTTTGTAG
chr4	14294747	14295053	14685649	14685955	-	124	306	9	L1HS	"COLO2T,COLO2N"	257	133	"GA-rich,L1HS,(TTTA)n"		MGC4836		c4p14294900FS	TTTTTCCTTCTGTGTCTACTCAAC	c4p14294900ES	AAATACCATGGAATACTATGCAGC
chr4	14371827	14372192	14762729	14763094	+	5100	365	22	L1HS	"COLO2T,COLO2N"	4367	791	"L2a,L1HS,L2b"		MGC4836		c4p14372009FS	CTTCCAAAAGAGTAGGGATGAAG	c4p14372009ES	GATGAGTTCATATCCTTTGTAGGG
chr4	15458238	15458955	15849140	15849857	+	1757	717	35	L1HS	"COLO2T,COLO2N"	1302	459	"L1HS,(A)n"	LINE:dbRIP	CD38		c4p15458596FS	AACTTGCTTTGAAACAAACCTTAG	c4p15458596ES	GAATATCACACTCTGGGGACTG
chr4	15908473	15908601	16299375	16299503	-	21	128	2	L1PA3	"COLO2T,COLO2N"	35	236	L1MCa				c4p15908537FS	ATCAGAAGATGGTAAGATGCTCTC	c4p15908537ES	TCATTCTCAGTAAACTATCGCAAG
chr4	16559783	16560286	16950685	16951188	+	532506	503	44	L1HS	"COLO2T,COLO2N"	422742	390	"L1HS,MLT1C,AluY"	LINE:dbRIP			c4p16560034FS	CTAACATGGTGAAACCCTGTCTC	c4p16560034ES	TCATTCTCAGTAAACTATCGCAAG
chr4	16869825	16870179	17260727	17261081	-	133	354	3	L1PA4	"COLO2T,COLO2N"	188	354	L1PA4				c4p16870002FS	ACATAGTTTGGGAAAATCTGAATG	c4p16870002ES	AGAGGTTAAGAGTATGTCACAGGG
chr4	17747498	17747600	18138400	18138502	+	16	102	3	L1PA2	"COLO2T,COLO2N"	50	135					c4p17747549FS	TTTCTCCCTGATTTATTTGATTTC	c4p17747549ES	CAAATGTCCAACAATGATAGACTG
chr4	17771339	17771804	18162241	18162706	-	6588	465	21	noL1	"COLO2T,COLO2N"	6653	465	AluSx	"LINE:dbRIP,Ewing,Iskow,Stewart"			c4p17771571FS	TATTTGAACAATAAACAGCCTTTG	c4p17771571ES	AGTGATCTTCCTGTCTTGGACTAC
chr4	17803095	17803443	18193997	18194345	-	329	348	5	noL1	"COLO2T,COLO2N"	303	116		"LINE:dbRIP,Ewing,Iskow,Stewart"			c4p17803269FS	ACCTAGCCTACATGGAGGTTTTAC	c4p17803269ES	TAGAGGATTTAATTCAAGAGGGAG
chr4	18124998	18125137	18515900	18516039	-	13	139	2	L1PA3	"COLO2T,COLO2N"	21	175					c4p18125067FS	AAACAATAGATTATCGAGTCAGGG	c4p18125067ES	TCATTCTCAGTAAACTATCGCAAG
chr4	18161804	18162003	18552706	18552905	+	66	199	2	L1PA3	"COLO2T,COLO2N"	59	199	L1MA9				c4p18161903FS	ACCACAAGAAAAGAAAATTACAGG	c4p18161903ES	TCATTCTCAGTAAACTATCGCAAG
chr4	18199631	18199793	18590533	18590695	-	45	162	5	L1PA4	"COLO2T,COLO2N"	39	286					c4p18199712FS	CTTTTACCATCTTATCCTCTGTCC	c4p18199712ES	GGAGGGATAGCATTAGGAGATATAC
chr4	18688292	18688681	19079194	19079583	-	1739	389	58	L1HS	"COLO2T,COLO2N"	1251	326	"L1HS,L1ME1,(T)n"				c4p18688486FS	ATTGCAGTATTTGTCACGTAGAAG	c4p18688486ES	GATGAGTTCATATCCTTTGTAGGG
chr4	18765091	18765522	19155993	19156424	+	168	431	5	L1PA13	"COLO2T,COLO2N"	274	68	"MADE1,L1PA13,AluSq2"				c4p18765306FS	ATTGGAAGAAAATACACTCCTCAG	c4p18765306ES	ATTTTGGTTATTTCTTGTCTCCTG
chr4	18779947	18780343	19170849	19171245	+	25031	396	49	L1HS	"COLO2T,COLO2N"	30565	385	"L1HS,(A)n"	LINE:dbRIP			c4p18780145FS	TCAAATAACCAACATCAACTTACG	c4p18780145ES	GATGAGTTCATATCCTTTGTAGGG
chr4	19328440	19328563	19719342	19719465	-	57	123	5	L1PA3	"COLO2T,COLO2N"	57	100	L1PA3				c4p19328501FS	GATAGTCTTTGGAGGAACATCATC	c4p19328501ES	CAAATGTCCAACAATGATAGACTG
chr4	20776200	20776553	21167102	21167455	+	824	353	15	L1HS	"COLO2T,COLO2N"	855	418	"(A)n,L1ME1,MLT1A1"	LINE:dbRIP	KCNIP4		c4p20776376FS	GAATAAATACTGTGTCCTCCCAAG	c4p20776376ES	ACACCGCATATTCTCACTCATAG
chr4	21297994	21298209	21688896	21689111	+	75	215	4	L1PA2	"COLO2T,COLO2N"	128	217	"L2a,L1PA2"		KCNIP4		c4p21298101FS	TTGAAATTTCTTTTACAGAGAGGG	c4p21298101ES	CAAATGTCCAACAATGATAGACTG
chr4	21535552	21535836	21926454	21926738	-	30	284	3	L1PA4	"COLO2T,COLO2N"	6	247	"L2c,L1PA4"		KCNIP4		c4p21535694FS	AAAGCTTTTTCTCTTATCTGCAAG	c4p21535694ES	ATGATGAGTTCATGTCCTTTGTAG
chr4	21689347	21689648	22080249	22080550	-	548	301	9	L1PA4	"COLO2T,COLO2N"	1211	317	"MLT1H2,L1PA4"				c4p21689497FS	AAAAATACAAAAATTAGCTGGACG	c4p21689497ES	AACCATCATTCTCAGCAAACTATC
chr4	23231486	23231988	23622388	23622890	+	2966	502	17	L1HS	"COLO2T,COLO2N"	2403	546	"(CAAAAA)n,(TAA)n,L1HS,L1PA16"				c4p23231737FS	GAATTCTTGCTCTGATTCTTTCTC	c4p23231737ES	TAATGCTAGATGACACGTTAGTGG
chr4	23796764	23796922	24187666	24187824	+	127	158	10	L1HS	"COLO2T,COLO2N"	48	660	GA-rich				c4p23796843FS	AGTCCTTTACTGGCATTCATACTC	c4p23796843ES	TGGTAAAAGCACTAATGTGTCATC
chr4	24264421	24264665	24655323	24655567	-	12	244	2	L1PA16	"COLO2T,COLO2N"	2	65	L1PA16				c4p24264543FS	TTGTATTTTTAGTAGAGATGGGGTG	c4p24264543ES	ATCCTGGCTAACACAGTGAAAC
chr4	26310728	26310847	26701630	26701749	+	26	119	3	L1PA5	"COLO2T,COLO2N"	11	430	"L1M4b,L1PA5"		TBC1D19		c4p26310787FS	TTAATGACAATAATATGAAGGCCC	c4p26310787ES	TGAGTTCATGTCCTTTGTAGAGAC
chr4	26347478	26347604	26738380	26738506	+	255	126	5	L1PA2	"COLO2T,COLO2N"	337	245			TBC1D19		c4p26347541FS	AGTACCCTATAATTCAAGCCTGTG	c4p26347541ES	GAGGGATAGCATTGGGAGATATAC
chr4	26538366	26538825	26929268	26929727	+	80	459	5	L1HS	"COLO2T,COLO2N"	39	469	"(TATAA)n,L1HS,MLT1A1"		STIM2		c4p26538595FS	AAATGTGGATTTCTGCTATTTTTC	c4p26538595ES	TCATTCTCAGTAAACTATCGCAAG
chr4	26652299	26652633	27043201	27043535	-	90	334	7	L1PA3	"COLO2T,COLO2N"	218	398					c4p26652466FS	GAACTTTGTATCACTCATTTGTGC	c4p26652466ES	TTTTATTATCTGGCCCTAACAATG
chr4	26728268	26728595	27119170	27119497	-	24	327	4	L1PA4	"COLO2T,COLO2N"	1	65	L1PA4				c4p26728431FS	TCACTTATACTCTCCATTCAGCAG	c4p26728431ES	GAATAGTGCTGCAATAAACATACG
chr4	26986161	26986455	27377063	27377357	-	1662	294	17	L1PA2	"COLO2T,COLO2N"	3053	313	L1PA2				c4p26986308FS	TTGAATTTCTGCACTACTTCTCTG	c4p26986308ES	GTGATGAGTTCATGTCCTTTGTAG
chr4	27807518	27807813	28198420	28198715	+	2241	295	19	L1HS	"COLO2T,COLO2N"	1932	297	"L1HS,AluSq2"				c4p27807665FS	TTAAACTCCTCAGTTTCATGTCTG	c4p27807665ES	TTTGTACTCATGCAAAACTACCTG
chr4	29011369	29011541	29402271	29402443	+	18	172	2	L1PA3	"COLO2T,COLO2N"	25	255	"L1PA3,MER92B"				c4p29011455FS	ATGGTGAATGGGATATTTTAACTG	c4p29011455ES	CAAATGTCCAACAATGATAGACTG
chr4	29142043	29142381	29532945	29533283	-	377020	338	72	L1HS	"COLO2T,COLO2N"	241117	335	"L2a,L1HS"	LINE:dbRIP			c4p29142212FS	TATTGGCATTCGTAGTTCTAATTG	c4p29142212ES	GATGAGTTCATATCCTTTGTAGGG
chr4	29584024	29584126	29974926	29975028	-	15	102	3	L1PA2	COLO2T	0	0	L1PA2				c4p29584075FS	GCCGTAATGTATACTTCATCTGTG	c4p29584075ES	CAAATGTCCAACAATGATAGACTG
chr4	29732559	29733272	30123461	30124174	-	21	713	7	noL1	"COLO2T,COLO2N"	56	711	"AluSc8,L1ME1,AluY"				c4p29732915FS	ACACCTTGAAAGAACTATCTGGTC	c4p29732915ES	GAATACTGGCTACAATTAAAAGGG
chr4	31281921	31282417	31672823	31673319	+	11	496	2	L1PA4	"COLO2T,COLO2N"	7	65	"(TTCA)n,L1PA4"				c4p31282169FS	TGGCTTTTCTTCTTACAAGGTTAC	c4p31282169ES	TAGACACATTTATTGTTCAATCCG
chr4	32312069	32312462	32668171	32668564	-	30	393	2	L1PA4	"COLO2T,COLO2N"	91	438	L1PA4				c4p32312265FS	TTCCTCCATTTTAAATCTATATGTTC	c4p32312265ES	TGCTTATATAGACAACGTTTGGAC
chr4	34122692	34123149	34446297	34446754	+	97	457	4	noL1	"COLO2T,COLO2N"	141	456	L1PA4				c4p34122920FS	TATGAAAAACATCTAGGCTTGACC	c4p34122920ES	ATAATCATGTGGTTTTTGTTGTTG
chr4	34673197	34673517	34996802	34997122	-	2406	320	14	L1PA3	"COLO2T,COLO2N"	3659	321	L1PA3				c4p34673357FS	TACTTTAGTGCTGTTTCTGAGTGC	c4p34673357ES	CATTTGTCAATTCATCTCTCTGTG
chr4	35615481	35615632	35939086	35939237	-	111	151	5	L1PA4	"COLO2T,COLO2N"	139	151	L1PA4				c4p35615556FS	GGAGGTACATTAGCTTGAGGTTAG	c4p35615556ES	TATGTATCAATCTGTTGGATAGGC
chr4	37237586	37237919	37561191	37561524	+	10	333	3	L1PA3	"COLO2T,COLO2N"	23	216	"MER5A1,L1PA3,L2"		C4orf19		c4p37237752FS	TAGTGTCTACAATGAAGGACATGG	c4p37237752ES	TCATTCTCAGTAAACTATCGCAAG
chr4	37252727	37253021	37576332	37576626	-	18252	294	23	noL1	"COLO2T,COLO2N"	13294	280	L1MA3		C4orf19		c4p37252874FS	TCACATTAAAGCCAATGTTAAGAG	c4p37252874ES	CAGAGAAATGCACATCAAAACTAC
chr4	37628117	37628534	37951722	37952139	-	3723	417	16	noL1	"COLO2T,COLO2N"	8664	417	"LTR16E1,MIR,L1MC1"	"LINE:Ewing,Iskow"	TBC1D1		c4p37628325FS	CTTAGAAGATTCCTAACGGAGTTG	c4p37628325ES	ATTTGTCCAATTCACAGGATTTAC
chr4	38547293	38547790	38870898	38871395	+	12	497	2	noL1	"COLO2T,COLO2N"	9	65	"Charlie18a,L2c"		FAM114A1		c4p38547541FS	ACTGCCTTCATCTTTCAAGTTTAG	c4p38547541ES	CTTTGTTTATTTGACCAGGCTTAC
chr4	39273585	39273867	39597190	39597472	+	211	282	8	L1PA3	"COLO2T,COLO2N"	250	384	AluSz6		C4orf34		c4p39273726FS	AAACTCCATCTCAAAGAAAGAAAG	c4p39273726ES	CATCAAAAATGATGAGTTCATGTC
chr4	39812713	39813007	40136318	40136612	-	3061	294	30	L1PA3	"COLO2T,COLO2N"	2885	239	"T-rich,L1PA3"		"KIAA1413,N4BP2"		c4p39812860FS	ATTCTCTCAGCTAGCAGTAGGTTC	c4p39812860ES	CATCAAAAATGATGAGTTCATGTC
chr4	41284394	41284715	41589637	41589958	-	16	321	2	L1PA3	COLO2T	0	0	L1PA3		LIMCH1		c4p41284554FS	AAACTATTCCTCCTCTACTCCTCC	c4p41284554ES	TCATTCTCAGTAAACTATCGCAAG
chr4	42881679	42882111	43186922	43187354	-	74	432	6	L1PA2	"COLO2T,COLO2N"	95	381	L1PA2				c4p42881895FS	ATTTTGGAATTTGTTTTAGGACAG	c4p42881895ES	TCAGGGATCTAGAACCAGAAATAC
chr4	42986554	42986850	43291797	43292093	+	2969	296	21	L1PA2	"COLO2T,COLO2N"	2799	298	"(TAAA)n,L1PA2,(A)n"				c4p42986702FS	TAAGGTAGCAATAGGCAAATAACC	c4p42986702ES	TAGACTGGATTAAGAAAATGTGGC
chr4	43297906	43298301	43603149	43603544	-	1758	395	19	L1HS	"COLO2T,COLO2N"	1860	397	"L1HS,AT_rich"				c4p43298103FS	GAGCCTAGAACAAAGATCTGTAGC	c4p43298103ES	ATGATGCCTTGAAATAAATAATCC
chr4	43362858	43363065	43668101	43668308	-	34	207	2	noL1	"COLO2T,COLO2N"	28	207	L1PBa				c4p43362961FS	TGATCATGATGGATTATCTTTTTG	c4p43362961ES	ACAAAAATGGTGCTAAGAGGATAG
chr4	43514071	43514476	43819314	43819719	-	2346	405	35	L1HS	"COLO2T,COLO2N"	2657	405	"L1PA8,L1HS"				c4p43514273FS	CCTTCAAAGGACAATAACTCATTC	c4p43514273ES	TCATTCTCAGTAAACTATCGCAAG
chr4	43748083	43748843	44053326	44054086	+	214	760	2	noL1	"COLO2T,COLO2N"	73	65	L1PA3				c4p43748463FS	CATCTAGCATTAGGTGTATCTCCC	c4p43748463ES	CTCATCTGACAAAGGGCTAATATC
chr4	45585108	45585448	45890351	45890691	-	3265	340	13	L1PA3	"COLO2T,COLO2N"	2225	231	"L1PA3,L1PA15"				c4p45585278FS	TTTTCTAGTTTGTGTGCATAGAGG	c4p45585278ES	ATGGCACATATTCTAAAATCCATC
chr4	45752833	45753106	46058076	46058349	+	25739	273	36	L1HS	"COLO2T,COLO2N"	10241	407	"L2a,L1HS,(A)n"	LINE:dbRIP	GABRG1		c4p45752969FS	AAAATTTTAGTGAGTCATGAAGGC	c4p45752969ES	CAAATGTCCAACAATGATAGACTG
chr4	45774110	45774385	46079353	46079628	+	12	275	2	L1PA4	COLO2T	0	0			GABRG1		c4p45774247FS	ATTTTCATCGCTGTTTCTTTTATC	c4p45774247ES	AATATGCAACATTTAACGGATTTC
chr4	46132825	46132963	46438068	46438206	-	108	138	5	L1PA3	"COLO2T,COLO2N"	180	135					c4p46132894FS	AACACTTTCTTCATCTGTAAAATGG	c4p46132894ES	TCATTCTCAGTAAACTATCGCAAG
chr4	46136722	46136944	46441965	46442187	-	514	222	4	L1PA2	"COLO2T,COLO2N"	354	218	"(TTTTG)n,AT_rich,L1PA2"				c4p46136833FS	TTTTTAGTAGAGATGGGGTTTCAC	c4p46136833ES	TAAGATTTCTAGTTTTCCCCTTCC
chr4	46493834	46494364	46799077	46799607	+	2149	530	26	L1HS	"COLO2T,COLO2N"	2659	477	"L1HS,ERVL-B4-int"		COX7B2		c4p46494099FS	AGATCCATCTGTCTTCTTTACAGG	c4p46494099ES	ACACCGCATATTCTCACTCATAG
chr4	46577187	46578089	46882430	46883332	+	23203	902	41	L1HS	"COLO2T,COLO2N"	20064	519	"L1PA10,L1HS,MER4A1"		COX7B2		c4p46577638FS	AATGTATAAAACTAAGCTGTGCCC	c4p46577638ES	ATTCAGCATAAATCTATCAGGTCC
chr4	46702182	46702568	47007425	47007811	-	749	386	8	noL1	"COLO2T,COLO2N"	743	386	AluY	"LINE:dbRIP,Ewing,Iskow,Stewart"			c4p46702375FS	GAAACCCCGTCTCTACTAAAAATAC	c4p46702375ES	TGATTTTTACCAAGCAAAATAAAAC
chr4	47047844	47048147	47353087	47353390	-	162	303	4	L1PA3	"COLO2T,COLO2N"	235	264			GABRB1		c4p47047995FS	TTTATGGTCATCTCATAACCTGTG	c4p47047995ES	TCATTCTCAGTAAACTATCGCAAG
chr4	47318572	47318692	47623815	47623935	-	3558	120	6	L1PA2	"COLO2T,COLO2N"	81	73	"L1PA2,MLT2D"		CORIN		c4p47318632FS	TTATGTTTGGTTTTGTTTGTTTTG	c4p47318632ES	TACCCAAAGGACTATAAATCATGC
chr4	47748398	47748785	48053641	48054028	-	46	387	6	L1HS	"COLO2T,COLO2N"	69	387	"AluJb,Charlie4a,L1HS"				c4p47748591FS	GAGACAGCTTCTCTCTCTCTGC	c4p47748591ES	TCATTCTCAGTAAACTATCGCAAG
chr4	48110922	48111383	48416165	48416626	-	23766	461	16	L1HS	"COLO2T,COLO2N"	43436	634	"L1HS,MIRc"		SLAIN2		c4p48111152FS	ACGAATTCTCTATTACCCATCATC	c4p48111152ES	TCATTCTCAGTAAACTATCGCAAG
chr4	48432708	48433186	48737951	48738429	+	279074	478	63	L1HS	"COLO2T,COLO2N"	210379	434	"L1HS,L1MC1"		FRYL		c4p48432947FS	TGGAATCTGTAGTATTGTCTCTGC	c4p48432947ES	TCATTCTCAGTAAACTATCGCAAG
chr4	48752270	48752743	49057513	49057986	-	58604	473	54	L1HS	"COLO2T,COLO2N"	79357	473	"L1MA8,L1HS,AluSq2"		FLJ21511		c4p48752506FS	AAGGTACTGTTGAATTCAGTTTGC	c4p48752506ES	TCATTCTCAGTAAACTATCGCAAG
chr4	48775233	48775566	49080476	49080809	+	1586	333	12	L1PA3	"COLO2T,COLO2N"	2925	339	"L1PA3,L1PA5"				c4p48775399FS	TTGAATCTATAAATTACCTTGGGC	c4p48775399ES	GTGATGAGTTCATGTCCTTTGTAG
chr4	48985914	48986105	49291157	49291348	-	176	191	3	L1PA10	"COLO2T,COLO2N"	1	65	"L1PA10,(TTTCG)n"				c4p48986009FS	TTTATTTCTGAACTTTTTGCAATG	c4p48986009ES	AGCTTATTTTTCTGTGAGCAAATC
chr4	52532214	52532351	52837457	52837594	-	13	137	2	L1PA3	"COLO2T,COLO2N"	5	73	"L1PA10,L1PA3"				c4p52532282FS	CAATTTTAGAGTAAGTGCCATGTG	c4p52532282ES	GACACTATGAAACAACCACGTAAG
chr4	52861836	52862357	53167079	53167600	-	140	521	11	L1PA3	"COLO2T,COLO2N"	105	521	"L1PA3,MIR,L1PA6"				c4p52862096FS	GATTCAGGGAAGCACAAATATAAC	c4p52862096ES	AATGCTAGATGACAAGTTAGTGGG
chr4	52880470	52880640	53185713	53185883	-	129	170	7	L1PA3	"COLO2T,COLO2N"	172	109	L1MA6				c4p52880555FS	TAGCCCTCAGTATCTATTCTTTCC	c4p52880555ES	TCATTCTCAGTAAACTATCGCAAG
chr4	53105379	53105837	53410622	53411080	+	81641	458	54	L1HS	"COLO2T,COLO2N"	46129	726	"L1HS,AluJo"				c4p53105608FS	AGGGAAAGAGAGAGAGAGAGAGAG	c4p53105608ES	TCATTCTCAGTAAACTATCGCAAG
chr4	53383363	53383926	53688606	53689169	+	11020	563	30	L1HS	"COLO2T,COLO2N"	4667	562	"L1ME4a,L1HS"				c4p53383644FS	AATTCTCAAGGCACAGAGATTATG	c4p53383644ES	TAATGCTAGATGACACGTTAGTGG
chr4	53508674	53508909	53813917	53814152	+	60	235	3	noL1	"COLO2T,COLO2N"	60	236	L1M5		"AK055055,BC042091,SCFD2"		c4p53508791FS	ATAGCCTTTATCTCGTTTAATCCC	c4p53508791ES	CCAATTCTCTACAAATTGATCTAGC
chr4	54744064	54744790	55049307	55050033	+	23	726	3	noL1	"COLO2T,COLO2N"	17	717	"AluSq,FLAM_A,(A)n,AluSz6,AT_rich,L2"		PDGFRA		c4p54744427FS	TAAAAATACAAAAATTAGCCAGGG	c4p54744427ES	TTTTAGTAGAGAAGGGGTTTCATC
chr4	57781764	57782162	58087007	58087405	-	4692	398	9	L1HS	"COLO2T,COLO2N"	1807	290	"L1HS,MIRb"	LINE:dbRIP			c4p57781963FS	CGTTTTGTCTATTCTTGGGATAAG	c4p57781963ES	GATGAGTTCATATCCTTTGTAGGG
chr4	57821076	57821430	58126319	58126673	-	83210	354	76	noL1	"COLO2T,COLO2N"	93568	423	L1PA13	"LINE:dbRIP,Ewing"			c4p57821253FS	ATTACTGCCTCAATTTCAGAACTC	c4p57821253ES	GAATATACTTTCTTTGCATCACCAC
chr4	58122897	58123293	58428140	58428536	-	142960	396	58	L1HS	"COLO2T,COLO2N"	122502	347	"T-rich,L1HS,L1PA6"				c4p58123095FS	CATACAATGAGTTAGGGAGGATTC	c4p58123095ES	GATGAGTTCATATCCTTTGTAGGG
chr4	58203872	58204465	58509115	58509708	-	58	593	3	L1PA2	"COLO2T,COLO2N"	99	685	"AluJo,L1MA4"				c4p58204168FS	GAGAAAATGTCTCTCTCCTCTTTG	c4p58204168ES	TAATGCTAGATGACGAGTTAGTGG
chr4	58224095	58224533	58529338	58529776	-	885	438	11	L1PA4	"COLO2T,COLO2N"	699	439	"L1PREC2,L1PA4"				c4p58224314FS	CCCTTTTAAAATTAACATAGACCG	c4p58224314ES	AACTAGAAATACCATTTGACCCAG
chr4	58455447	58455670	58760690	58760913	-	2639	223	10	L1PA3	"COLO2T,COLO2N"	2860	231	L1PA3				c4p58455558FS	GATACAAACAATGAGAAGAGGGAG	c4p58455558ES	TCATTCTCAGTAGAGTATCGCAAG
chr4	58582987	58583434	58888230	58888677	+	45921	447	27	L1HS	"COLO2T,COLO2N"	31147	431	"L1HS,(A)n"	LINE:dbRIP			c4p58583210FS	ATCTAGATCATCTTTTTCTGTGCC	c4p58583210ES	GATGAGATCATATCCTTTGTAGGG
chr4	58611829	58612277	58917072	58917520	-	1108	448	10	noL1	"COLO2T,COLO2N"	1769	316	L3	"LINE:dbRIP,Ewing"			c4p58612053FS	CCACCAGTGGGTGTACTTAATATG	c4p58612053ES	ATTTCGGATTTTTAGTAGAGAGGG
chr4	58790088	58790238	59095331	59095481	-	248	150	7	L1PA2	"COLO2T,COLO2N"	508	150	L1PA2				c4p58790163FS	AGAGTTCATCCCTTGTACTCATTC	c4p58790163ES	TCATTCTCAGTAAACTATCGCAAG
chr4	59136895	59137505	59442138	59442748	-	28917	610	25	L1HS	"COLO2T,COLO2N"	54774	655	"LTR16E2,L1HS"				c4p59137200FS	GTGTTCTAACACTGTCACTTCCAG	c4p59137200ES	GGCACTATTCACAATAGCAAAGAC
chr4	59312530	59312651	59617773	59617894	-	10	121	2	L1PA3	"COLO2T,COLO2N"	1	65	"L1PA3,(T)n,MSTA"				c4p59312590FS	ACTTTCCTCAGTGTATCCTAATGG	c4p59312590ES	TCAATAAGTTTATGTGTCCACCTG
chr4	59317307	59317626	59622550	59622869	+	11	319	2	noL1	"COLO2T,COLO2N"	390	357	"L2a,LTR80A,L1M5"	"LINE:dbRIP,Ewing,Iskow"			c4p59317466FS	TCAGTTCTCTAAGTGAAGTTCGTG	c4p59317466ES	ATATGCACAAACACACACAAAAG
chr4	59633133	59633458	59950538	59950863	+	100118	325	39	L1HS	"COLO2T,COLO2N"	157077	325	L1HS				c4p59633295FS	AAGTAAAAGGCAGGATTTTTGAG	c4p59633295ES	GATGAGTTCATATCCTTTGTAGGG
chr4	59882076	59882370	60199481	60199775	+	53	294	2	L1PA3	"COLO2T,COLO2N"	36	294	"MSTD,L1PA3"				c4p59882223FS	ATAAGGAAGTTGTATAGTGGTGGC	c4p59882223ES	TCATTTTCAGTAAACTATCGCAAG
chr4	60268373	60268797	60585778	60586202	-	185838	424	93	L1HS	"COLO2T,COLO2N"	298104	537	"L1HS,L1PA5"				c4p60268585FS	TCGTTCTGTTTATATGATGGATTG	c4p60268585ES	TCATTCTCAGTAAACTATCGCAAG
chr4	61532966	61533079	61850371	61850484	+	125	113	2	L1PA2	"COLO2T,COLO2N"	2097	113	"HAL1,L1PA2"				c4p61533022FS	TTTGGATAGGTCTTTTTAATCTGG	c4p61533022ES	TTAATTAACATAGCCAATCAAGGG
chr4	62424984	62425239	62742389	62742644	+	13	255	3	noL1	"COLO2T,COLO2N"	8	234	"(A)n,MER41A,(TAAAA)n"		LPHN3		c4p62425111FS	TCTCTCACTTTAAAAACTCCCATC	c4p62425111ES	AACAACACTTAGTCCAGTTTAGGG
chr4	62488035	62488297	62805440	62805702	-	57476	262	27	L1HS	"COLO2T,COLO2N"	19444	536	"L1HS,AluSg,L1ME2"		LPHN3		c4p62488166FS	CAGTCTTCTTATTCCTCTCCTCAC	c4p62488166ES	GATGAGTTCATATCCTTTGTAGGG
chr4	63274764	63275311	63592169	63592716	-	5499	547	21	L1HS	"COLO2T,COLO2N"	5586	551	"L1HS,AluSx"				c4p63275037FS	ATTTTTGTGTTTTTGGTAGAGACG	c4p63275037ES	ACACCGCATATTCTCACTCATAG
chr4	63349422	63349700	63666827	63667105	-	332	278	9	L1PA2	"COLO2T,COLO2N"	638	301	"L1PA2,L1PA15-16"				c4p63349561FS	TTCAGGTCTGATGTTTAAGTCTTG	c4p63349561ES	ATGATGACTTCATGTCCTTTGTAG
chr4	64821685	64822244	65139090	65139649	-	2219	559	4	noL1	"COLO2T,COLO2N"	2122	76	"AT_rich,AluSp"				c4p64821964FS	GTATTTTCACAATCAAACCTCCTC	c4p64821964ES	AAACGCCGTCTCTACTAAAAATAC
chr4	65253655	65253938	65571060	65571343	+	97	283	7	L1PA3	"COLO2T,COLO2N"	77	185	AluJo				c4p65253796FS	CCCTCTTAATCAATATCATTCCAC	c4p65253796ES	TGGAAATCATCATTCTCAGTAAAC
chr4	66323887	66324043	66641292	66641448	+	349	156	16	L1HS	"COLO2T,COLO2N"	176	151	"L1HS,L1ME3"	LINE:dbRIP			c4p66323965FS	CTTAGCCTTTCTGAGAGTGTTTTC	c4p66323965ES	CACATTTCAGTTTGTAAGATGGAC
chr4	66491549	66491668	66808954	66809073	-	2111	119	4	noL1	"COLO2T,COLO2N"	114	81	MLT1C	"LINE:Ewing,Iskow"			c4p66491608FS	CTGACTTCAAGAGTACAGTTTTGC	c4p66491608ES	ATGCTTTGATTCTCATCTTGAGTC
chr4	68437662	68438258	68755067	68755663	+	1722	596	20	L1PA2	"COLO2T,COLO2N"	474	230	"L1PA2,L2,A-rich"		AJ617629		c4p68437960FS	GTGAATACAGAGCACAATGAAAAG	c4p68437960ES	TAATGCTAGATGACACGTTAGTGG
chr4	70947621	70947742	70913032	70913153	-	77	121	2	L1PA4	"COLO2T,COLO2N"	109	121	"L1PA4,(TTA)n"				c4p70947681FS	ATCACTTCTTTTACCCAGTTTGAG	c4p70947681ES	ATCCATGAATGGGTTTTTATAGTG
chr4	71127901	71128256	71093312	71093667	+	17818	355	13	noL1	"COLO2T,COLO2N"	27983	178	Tigger1	"LINE:Ewing,Iskow,Stewart"	C4orf7		c4p71128078FS	AAACTTAATTGATAAAGCAGTGGC	c4p71128078ES	TAACAATCTGCCTGTAGAAGTCTG
chr4	71234580	71234883	71199991	71200294	+	1038	303	13	L1HS	"COLO2T,COLO2N"	1122	457	"L1HS,(A)n"	LINE:dbRIP			c4p71234731FS	GAAAAGACTATAGAGTCCGCTCTG	c4p71234731ES	GATGAGTTCATATCCTTTGTAGGG
chr4	71888023	71888534	71669159	71669670	-	30	511	3	noL1	"COLO2T,COLO2N"	24	511	"AluJb,AluSx1"		RUFY3		c4p71888278FS	CCCTTTCCTCTAGTTTTTCCTTAC	c4p71888278ES	ATTCCTCTTGTTCACTCTACCATC
chr4	72262825	72262928	72043961	72044064	+	51	103	7	noL1	"COLO2T,COLO2N"	84	83	L1PA4				c4p72262876FS	AGCCTGTTATTGGTCTATTCAGAG	c4p72262876ES	CACCACACTTATTTCAAAACTGAC
chr4	73135091	73135224	72916227	72916360	-	74	133	3	L1PA3	"COLO2T,COLO2N"	19	226	"L1PA3,MER4D1"		NPFFR2		c4p73135157FS	GAGTTTGGAGATTTTCCATGTTAG	c4p73135157ES	CCCAAATGTACAACAATGATAGAC
chr4	73248122	73248239	73029258	73029375	-	13	117	2	L1PA3	"COLO2T,COLO2N"	16	239	L1PA17				c4p73248180FS	TCTATTGTATATGTGGCCATGTTC	c4p73248180ES	TCATCATTCTCAGTAAACTCTTGC
chr4	73315373	73315614	73096509	73096750	-	35	241	4	L1PA4	"COLO2T,COLO2N"	41	86	"L2a,L1PA4"				c4p73315493FS	CCTACCCATTTTGGTATACTCTTG	c4p73315493ES	TTGTAAATCATGCTGCTATAAAGG
chr4	73587159	73587297	73368295	73368433	-	58	138	3	noL1	"COLO2T,COLO2N"	77	138	L1PA16		ADAMTS3		c4p73587228FS	TACATCTTGTAGAATTTGGCTGTG	c4p73587228ES	AGACTCCATCAAGAAAACAAAAAC
chr4	73687059	73687798	73468195	73468934	+	10	739	2	L1PA4	"COLO2T,COLO2N"	1	65	"MSTB1,AT_rich,L3b,L1PA4"				c4p73687428FS	GGGTTCTTACTCTGTTAGTTCCTG	c4p73687428ES	ATTTTGGACATAGCATTTAAGGAC
chr4	74945822	74946293	74726958	74727429	-	13	471	5	noL1	"COLO2T,COLO2N"	11	69	"AT_rich,AluSp"				c4p74946057FS	CATGATGATTCAAACTTTTCTTTG	c4p74946057ES	TTTAGCCTGACTACTTTCTCTTGC
chr4	75255711	75255976	75036847	75037112	+	5028	265	8	L1PA4	"COLO2T,COLO2N"	6421	445	"L1PA4,L1ME1"		MTHFD2L		c4p75255843FS	ATATTTAGTAGAGACGGGGTTTCG	c4p75255843ES	ATGATGAGTTCATGTCCTTTGTAG
chr4	75956313	75956453	75737289	75737429	-	81	140	5	L1PA2	"COLO2T,COLO2N"	64	140	L2a				c4p75956383FS	TGTCACTAGTCTGTGCTCTCTTTC	c4p75956383ES	ATGATGAGTTCATGTCCTTTGTAG
chr4	78226101	78226270	78007077	78007246	-	18	169	3	L1PA4	"COLO2T,COLO2N"	9	65	AluJb				c4p78226185FS	TTTTATTTAACAGAAGCAGGAACC	c4p78226185ES	AACACCACATGTTCTCACTCATAG
chr4	78455506	78455864	78236482	78236840	+	69	358	7	L1HS	"COLO2T,COLO2N"	133	365	L1HS	LINE:dbRIP			c4p78455685FS	TAATCCAGAGTTGGTTCTACCTTC	c4p78455685ES	TGTGATGCTATTGGTTTTTGTAAG
chr4	79251891	79252319	79032867	79033295	+	112648	428	46	L1HS	"COLO2T,COLO2N"	71373	519	"L1HS,MamRep564"		FRAS1		c4p79252105FS	AGCTAGCTTTTGACATGACTTTTC	c4p79252105ES	GATGAGTTCATATCCTTTGTAGGG
chr4	79405805	79405959	79186781	79186935	-	11	154	2	noL1	"COLO2T,COLO2N"	5	65	(TGAA)n		FRAS1		c4p79405882FS	ACTCTGCCAGGAATAGTAACTCAG	c4p79405882ES	GCCATTACAGATATAAAGCCTGTC
chr4	79441817	79442087	79222793	79223063	-	38	270	2	L1PA3	"COLO2T,COLO2N"	29	139	L1PA3		FRAS1		c4p79441952FS	TCAAGGTATAAGAGAAAAGCAAGC	c4p79441952ES	CAAATGTCCAACAATGATAGACTG
chr4	79494133	79494561	79275109	79275537	+	2668	428	33	L1HS	"COLO2T,COLO2N"	2560	470	"L1HS,(A)n"	LINE:dbRIP	FRAS1		c4p79494347FS	GCAGGAATCCAGAAAATAACATAC	c4p79494347ES	ATGATGAGTTCATGTCCTTTGTAG
chr4	79928555	79929145	79709531	79710121	-	23	590	7	noL1	"COLO2T,COLO2N"	49	590	(T)n		"DKFZp434K0614,BMP2K"		c4p79928850FS	TACGTGCAGTAATGTGGATCTAAG	c4p79928850ES	AAGCACTAGCATTTTCAAAGAAAG
chr4	80850698	80851129	80631674	80632105	+	138	431	19	L1HS	"COLO2T,COLO2N"	71	298	"L1HS,AT_rich,L1PA13"				c4p80850913FS	AAAAATAGTGTGGAGAAAGAATGC	c4p80850913ES	TCATTCTCAGTAAACTATCGCAAG
chr4	80987530	80987780	80768506	80768756	+	320	250	3	noL1	"COLO2T,COLO2N"	248	336	AluSq	"LINE:dbRIP,Ewing"	GDEP		c4p80987655FS	CAACATCTTTACTCCTGACAACAC	c4p80987655ES	TGCAGTGACTCATGTCTATAATCC
chr4	81113062	81113479	80894038	80894455	+	2056743	417	89	L1HS	"COLO2T,COLO2N"	1285653	359	"L1HS,G-rich"	LINE:dbRIP	"ANTXR2,DKFZp667K1925"		c4p81113270FS	CATCAACCAGGTCTTCTTTATTTC	c4p81113270ES	GATGAGTTCATATCCTTTGTAGGG
chr4	82031905	82032432	81812881	81813408	+	177252	527	62	L1HS	"COLO2T,COLO2N"	370986	451	"L1HS,L1M1,A-rich"		C4orf22		c4p82032168FS	GTATTACTCAAGAAATTTTTGCCC	c4p82032168ES	TCATTCTCAGTAAACTATCGCAAG
chr4	82104008	82104553	81884984	81885529	-	10	545	2	L1PA7	COLO2T	0	0	AT_rich				c4p82104280FS	AATAATAAATGAGCCCTGTAGCTG	c4p82104280ES	AGGGATAGCATTAGGAGAAATACC
chr4	82159312	82159592	81940288	81940568	-	12	280	3	L1HS	"COLO2T,COLO2N"	21	342	MIR				c4p82159452FS	ATCTCATAGGACTTCTATCATGGC	c4p82159452ES	TCATTCTCAGTAAACTATCGCAAG
chr4	83150357	83150788	82931333	82931764	+	11745	431	29	L1HS	"COLO2T,COLO2N"	8058	681	L1HS	LINE:dbRIP			c4p83150572FS	CAAGTATAGGAAAAGGTGGTTCTC	c4p83150572ES	GATGAGTTCATATCCTTTGTAGGG
chr4	83164927	83165180	82945903	82946156	+	367	253	5	L1PA3	"COLO2T,COLO2N"	320	271	L1PA3				c4p83165053FS	AAACTCTAAAATTTGCTTCTGTGC	c4p83165053ES	AGGATGAGTTCATGTCCTTTGTAG
chr4	83392346	83392703	83173322	83173679	+	871	357	7	L1PA3	"COLO2T,COLO2N"	521	375	"L1PA3,Charlie2b,AluSq2"				c4p83392524FS	GAAATACCAATTTACAAGGTGGAC	c4p83392524ES	ATCATCATTCTCGGTAAACTATCG
chr4	84714794	84715103	84495770	84496079	-	14	309	7	noL1	"COLO2T,COLO2N"	10	310	"(T)n,AluYf4"		AGPAT9		c4p84714948FS	TATGTTTGAGATGGTTTCAACTTC	c4p84714948ES	GCCTCAAATTACAGATTAGAAAGG
chr4	85536246	85536448	85317222	85317424	-	434	202	4	L1PA6	"COLO2T,COLO2N"	1	65					c4p85536347FS	CATAATGAGACATCTTAGGGAAGG	c4p85536347ES	CTAATGTAAATGACGAGTTGATGG
chr4	86537647	86537959	86318623	86318935	+	217	312	13	L1HS	"COLO2T,COLO2N"	193	97	"L1HS,A-rich"				c4p86537803FS	AATGAAACCAAGGAAGATAGAATG	c4p86537803ES	TTGTTCTTGCGATAGTTTACTGAG
chr4	86762187	86762304	86543163	86543280	-	270	117	4	L1PA4	"COLO2T,COLO2N"	268	413	"L1MA9,L1PA4"		ARHGAP24		c4p86762245FS	ACATCCTTTGCCTACTTTTTAATG	c4p86762245ES	TAAATGTCCAACAACGATAGACTG
chr4	86794410	86794825	86575386	86575801	-	39	415	4	noL1	COLO2T	0	0	"AT_rich,MLT1B,MIRb"		ARHGAP24		c4p86794617FS	CCTATAACTGCCATTACAAAATGC	c4p86794617ES	CTAATATCCAAAACTTGTGTCTGC
chr4	87034230	87034734	86815206	86815710	+	682746	504	146	L1HS	"COLO2T,COLO2N"	480111	587	L1HS		ARHGAP24		c4p87034482FS	ATTTTTAACAGAGACAGGCTTTTG	c4p87034482ES	TCATTCTCAGTAAACTATCGCAAG
chr4	87768346	87768730	87549322	87549706	-	28411	384	29	L1HS	"COLO2T,COLO2N"	24493	510	"L1HS,L1ME1"		PTPN13		c4p87768538FS	TGCTGATTAGTATTCCATTGTGAG	c4p87768538ES	TCATTCTCAGTAAACTATCGCAAG
chr4	88009264	88009614	87790240	87790590	+	295	350	22	L1PA3	"COLO2T,COLO2N"	384	347	"L2b,L1PA3,AT_rich"				c4p88009439FS	ATTTAGAAATACGGTCTTGCTTTG	c4p88009439ES	ACACTGCATATTCTCACTCATAGG
chr4	88485677	88485933	88266653	88266909	+	33	256	3	noL1	"COLO2T,COLO2N"	46	257	L1M4		HSD17B11		c4p88485805FS	CTTACTCTGTTTTTAGTATCGGGG	c4p88485805ES	TGTAGTCCTAGATACTCAGGAGGC
chr4	88486796	88487343	88267772	88268319	-	130	547	6	L1HS	"COLO2T,COLO2N"	946	547	"AluSz6,L1HS,AT_rich,FLAM_A"	LINE:dbRIP	HSD17B11		c4p88487069FS	TAAAAATAGAAAAATTAGCTGGGC	c4p88487069ES	ACACCGCATATTCTCACTCATAG
chr4	88705277	88705979	88486253	88486955	+	1757969	702	86	L1HS	"COLO2T,COLO2N"	2200715	702	"LTR85c,L1HS,L1ME3F"	LINE:dbRIP			c4p88705628FS	AGTAGAGTTTTACTGTGGGCTTTG	c4p88705628ES	TGGGAGATATACCTAATGCTAGATG
chr4	89300965	89301396	89081941	89082372	-	10807	431	23	L1HS	"COLO2T,COLO2N"	6187	866	"AluJo,L1HS,AluSx"		ABCG2		c4p89301180FS	CAAAGTAAAAACAAATCAAAACCC	c4p89301180ES	TCATTCTCAGTAAACTATCGCAAG
chr4	91445033	91445224	91226010	91226201	+	47	191	6	L1PA3	"COLO2T,COLO2N"	20	291	AluY		KIAA1680		c4p91445128FS	GTTGTGAACCTACAGACTTCAATG	c4p91445128ES	TGGAAATCATCATTCTCAGTAAAC
chr4	91738339	91738481	91519316	91519458	-	22	142	2	L1PA4	"COLO2T,COLO2N"	21	261	"L1MA9,L1PA4"		KIAA1680		c4p91738410FS	TCTGTCTCTATAGGGTTGACCTTC	c4p91738410ES	AAAGGACCTGAATACACATTTCTC
chr4	91815738	91815946	91596715	91596923	-	11232	208	24	L1HS	"COLO2T,COLO2N"	7718	416	"T-rich,L1HS"	"LINE:dbRIP,Alu:Hormozdiari"	KIAA1680		c4p91815842FS	ACTTACAGTTGCAAGGCTTATTTC	c4p91815842ES	GATGAGTTCATATCCTTTGTAGGG
chr4	93068502	93068886	92849479	92849863	-	995	384	12	noL1	COLO2T	0	0	"L1MC3,MSTA"				c4p93068694FS	ACATTGATATGGTTTGGATCTATG	c4p93068694ES	AACTTCTGGTATCTCTGTTTCAGG
chr4	93124361	93124948	92905338	92905925	+	2043	587	24	L1HS	"COLO2T,COLO2N"	3043	463	"L1HS,LTR16E1,L1M5"				c4p93124654FS	GGGAAAACATTGTAATAACCAGAC	c4p93124654ES	GATATACCTAATGCCAGATGACAC
chr4	94264239	94264825	94045216	94045802	+	9802	586	22	L1HS	"COLO2T,COLO2N"	11185	255	L1HS		GRID2		c4p94264532FS	AAATTGACCTTAATTTGCTCTGTC	c4p94264532ES	ACAAACGGAGTAGTTAGACTGGAC
chr4	94578494	94578791	94359471	94359768	-	28	297	3	L1PA4	"COLO2T,COLO2N"	37	297	L2c		GRID2		c4p94578642FS	GAGAGAGACCTTCTTTTTGCATAG	c4p94578642ES	AATGCTAAATGACAAGTTAATGGG
chr4	94748414	94748534	94529391	94529511	-	868	120	15	L1HS	"COLO2T,COLO2N"	408	78	"L1HS,AT_rich"		GRID2		c4p94748474FS	ATTTGTACTATTTTGCATTGCCTC	c4p94748474ES	ACTGTTCACAATAGCAAAGACTTG
chr4	94778156	94778539	94559133	94559516	-	203183	383	29	L1HS	"COLO2T,COLO2N"	354613	381	L1HS	LINE:dbRIP	GRID2		c4p94778347FS	CTTCCTCTCATCTTCTTTTGCTAC	c4p94778347ES	GATGAGTTCATATCCTTTGTAGGG
chr4	95717752	95718050	95498729	95499027	-	22	298	5	noL1	"COLO2T,COLO2N"	6	297	"(T)n,AluYa5"	Alu:dbRIP	"PDLIM5,LIM"		c4p95717901FS	TAATCCCTTCTGAATGTTAATTCC	c4p95717901ES	AGTACTTTTCCATAACCTGTTTGC
chr4	96467886	96468282	96248863	96249259	-	645	396	23	L1HS	"COLO2T,COLO2N"	1110	397	"L1HS,LTR1C"		UNC5C		c4p96468084FS	AAGCATATCACACACAGTGTTCTC	c4p96468084ES	TCATTCTCAGTAAACTATCGCAAG
chr4	96526199	96526417	96307176	96307394	-	58	218	5	L1PA2	"COLO2T,COLO2N"	25	92	L1PA2		UNC5C		c4p96526308FS	CATCATGATTCTTCCAGTAGACAG	c4p96526308ES	AAGGATTAAACAAGCATTGGATAG
chr4	97996288	97996450	97777265	97777427	+	32	162	3	L1PA2	"COLO2T,COLO2N"	49	65	L1PA2				c4p97996369FS	ATTGTAGTCTTGTGTCTGAAAGCC	c4p97996369ES	CTCTATAGCTCGAGGTGCTTTATC
chr4	98398661	98398774	98179638	98179751	-	16	113	2	L1PA2	"COLO2T,COLO2N"	12	113	"L1PA2,L1PA4"				c4p98398717FS	TGTATATTCTGTTGATTTGGGATG	c4p98398717ES	AGCAAAATAACCAGCTAACATCAG
chr4	99049176	99049450	98830153	98830427	+	3478	274	10	L1PA3	"COLO2T,COLO2N"	4747	251	"(CAAAAA)n,(TAA)n,L1PA3,L1M5"		C4orf37		c4p99049313FS	GACTTTTGTTTCTATTTTTGTGGG	c4p99049313ES	TCATTCTCAGTAAACTATCGCAAG
chr4	101140454	101140711	100921431	100921688	-	50	257	4	L1PA2	"COLO2T,COLO2N"	15	185	"L1PA2,MIR3"				c4p101140582FS	CCTACATTATAATTTCCCAGGTTG	c4p101140582ES	TCATTCTCAGTAAACTATCGCAAG
chr4	102670460	102670722	102451437	102451699	+	262	262	11	L1PA2	"COLO2T,COLO2N"	62	74	"(TG)n,L1PB1,L1PA2,AluSg7"		BANK1		c4p102670591FS	ACAATTCACAATAGCAAAACTGTG	c4p102670591ES	TACTTGTTATCTTTTATCCCTCGC
chr4	103007304	103008185	102788281	102789162	+	8904	881	46	L1HS	"COLO2T,COLO2N"	19546	880	"(TAAA)n,L1HS,L1MCa"	"LINE:dbRIP,Alu:Hormozdiari"	BANK1		c4p103007744FS	AATTGGCGTTCTTAGACTATTCAC	c4p103007744ES	GTTGAATTTCTCTTCAGAAACCAC
chr4	103104535	103104974	102885512	102885951	-	11730	439	23	L1PA3	"COLO2T,COLO2N"	12014	440	"L1PA3,AT_rich"		BANK1		c4p103104754FS	AATCGAATATATCAAGTCTGGAGC	c4p103104754ES	TCATTCTCAGTAAACTATCGCAAG
chr4	103183854	103184227	102964831	102965204	-	94	373	4	L1PA3	"COLO2T,COLO2N"	135	373	L1PA3		BANK1	"BANK1.10,BANK1.14,BANK1.9"	c4p103184040FS	ATCCTTGCTTATCATCAAAAAGTC	c4p103184040ES	ATCATCATTCTCAGTAAACTGTCG
chr4	103262328	103262444	103043305	103043421	-	21	116	2	L1PA3	"COLO2T,COLO2N"	9	247	"L1PA3,L1MA3"				c4p103262386FS	GGATAATAGTTGTTTTCCTTCAGC	c4p103262386ES	TTGAAAATACAAGTCAGAGGACAC
chr4	103562855	103563090	103343832	103344067	+	411	235	10	noL1	"COLO2T,COLO2N"	123	186	"L2b,AluSx"	"LINE:Ewing,Iskow,Stewart"			c4p103562972FS	TGCAAGGAACATACTTTATAGCAG	c4p103562972ES	ATTCAAGAGTCTGCTAACTGATCC
chr4	104434098	104434261	104214649	104214812	+	4206	163	15	noL1	"COLO2T,COLO2N"	2306	166		"LINE:Ewing,Stewart"			c4p104434179FS	CTTTCTCACCTGTGCCTAAGTATG	c4p104434179ES	CAGTCAGCAATATTTATCAAGCAC
chr4	104670884	104670996	104451435	104451547	+	14	112	2	noL1	"COLO2T,COLO2N"	2	65	L1PA4				c4p104670940FS	CACAATGGTCGAACTAGTTTACAG	c4p104670940ES	ACAAGGCTACAGTAACCAAAACAG
chr4	105943679	105943781	105724230	105724332	-	46	102	8	L1HS	"COLO2T,COLO2N"	97	473	"L1P1,L1HS"				c4p105943730FS	CAGCATATAAACAGAACCAATGAC	c4p105943730ES	GATGAGTTCATATCCTTTGTAGGG
chr4	105947218	105947676	105727769	105728227	+	445	458	28	L1PA4	"COLO2T,COLO2N"	281	457	"L1MA3,L1PA4"				c4p105947447FS	ATTTGAGGTCTTAGGAAATTTTTG	c4p105947447ES	AACCATCAATCTCAGCAAACTATC
chr4	106447702	106448126	106228253	106228677	-	162	424	12	L1PA2	"COLO2T,COLO2N"	289	459	L1PA2				c4p106447914FS	AAACAATTTTTACATCTTTCACCG	c4p106447914ES	AACTAGAAATACCATTTGACCCAG
chr4	106952334	106952463	106732885	106733014	+	13	129	2	L1PA3	"COLO2T,COLO2N"	5	129	L2c		GSTCD		c4p106952398FS	ATCCTGATGTTTACTTGCTAAAGG	c4p106952398ES	TGACCAGAGAATGATGAGATTATG
chr4	107265558	107265663	107046109	107046214	+	54	105	4	L1PA2	"COLO2T,COLO2N"	18	105	"L1PA2,L1MA4"		"TBCKL,TBCK"		c4p107265610FS	GGCACAATAAAATAATGGGATTAC	c4p107265610ES	CAAATGTCCAACAATGATAGACTG
chr4	107711551	107711722	107492102	107492273	-	15	171	5	L1HS	"COLO2T,COLO2N"	9	163	"(TTTTA)n,L1HS"				c4p107711636FS	CCTAATAAACTTGGGACTATGTGG	c4p107711636ES	GATGAGTTCATATCCTTTGTAGGG
chr4	107781998	107782138	107562549	107562689	+	25	140	7	L1PA2	"COLO2T,COLO2N"	16	77	"L1PA2,(A)n"				c4p107782068FS	TAAGTGAGTCTGAAAAGCAAAATG	c4p107782068ES	CAAATGTCCAACAATGATAGACTG
chr4	107889428	107889575	107669979	107670126	+	251	147	3	noL1	COLO2T	0	0					c4p107889501FS	TGTTTGCAAATAAATCTCAAAGTG	c4p107889501ES	GGGAATTATGATCCAGTCAATTAG
chr4	108497191	108497296	108277742	108277847	+	80930	105	32	L1HS	"COLO2T,COLO2N"	45977	98	"L1HS,(TAAAA)n,L1PA4"	LINE:dbRIP			c4p108497243FS	TTGTGATAGTTTGCTGAGAATGAC	c4p108497243ES	CAAATGTCCAACAATGATAGACTG
chr4	108818849	108819146	108599400	108599697	+	134	297	5	L1PA4	"COLO2T,COLO2N"	124	199	L1MCc		PAPSS1		c4p108818997FS	TTTTAGTCTCTAGACCTGCTCCTG	c4p108818997ES	AACCATCATTCTCAGCAAACTATC
chr4	110486309	110486570	110266860	110267121	+	1820	261	6	L1PA3	"COLO2T,COLO2N"	2653	218	"L1PA3,L1PA6"				c4p110486439FS	ATTCTGTCATAACTACCCAAGGAC	c4p110486439ES	TCATTCTCAGTAAACTATCGCAAG
chr4	111546116	111546511	111326667	111327062	-	22	395	6	L1PA2	"COLO2T,COLO2N"	26	395	"L1PA2,MER4A"				c4p111546313FS	AAAAGTCAAACTGGGAACTACATC	c4p111546313ES	TCATTCTCAGTAAACTATCGCAAG
chr4	112199713	112199828	111980264	111980379	-	1652	115	9	L1PA2	"COLO2T,COLO2N"	3389	85	AT_rich				c4p112199770FS	CAGAGAGTAGAAATTGGGTAGAGC	c4p112199770ES	TCATTCTCAGTAAACTATCGCAAG
chr4	112335701	112335884	112116252	112116435	-	3914	183	22	L1PA4	"COLO2T,COLO2N"	2135	190	THE1D				c4p112335792FS	AAGAAACCCAGGAATACCTTTAAC	c4p112335792ES	TAGACTGGATTAAGAAAATGTGGC
chr4	112630522	112631057	112411073	112411608	+	30725	535	45	L1HS	"COLO2T,COLO2N"	25187	541	"L1HS,L1PA8A"				c4p112630789FS	ATGAGTGAGAACATGTGGTATTTG	c4p112630789ES	TCATTCTCAGTAAACTATCGCAAG
chr4	112848418	112848684	112628969	112629235	+	7603	266	16	noL1	"COLO2T,COLO2N"	3071	265	AluSx3	"LINE:dbRIP,Ewing,Iskow,Stewart"			c4p112848551FS	TTTAGTAAATACAGTTTTTGGCCG	c4p112848551ES	ATGTGACCACTAAATTGTTTGTTG
chr4	113041380	113041690	112821931	112822241	+	75515	310	41	L1HS	"COLO2T,COLO2N"	154280	313	"L1MC,L1HS,L1MC1"	LINE:dbRIP			c4p113041535FS	GATTCTATAAACCCACTTAGAGCG	c4p113041535ES	GATGAGTTCATATCCTTTGTAGGG
chr4	115010735	115011025	114791286	114791576	-	45	290	8	L1PA2	"COLO2T,COLO2N"	27	271	"L1PA2,MLT1H,THE1D"				c4p115010880FS	TTGGAATAGAATATGTACGTGTGG	c4p115010880ES	TAGCCAGTAGCTGGAATTCTTTAC
chr4	115352120	115352553	115132671	115133104	+	9697	433	16	noL1	"COLO2T,COLO2N"	8885	436	MLT1L	"LINE:Ewing,Iskow,Stewart"			c4p115352336FS	CCATTTTTATTCAATACCTTTTGG	c4p115352336ES	AAATACTGAAAGGACTGAAACCAG
chr4	115762438	115762614	115542989	115543165	-	59	176	2	L1PA3	"COLO2T,COLO2N"	38	265	L1PA3		UGT8		c4p115762526FS	TGTTAAAGATCATTTTTCCTCTGG	c4p115762526ES	GGAAATCATCATTCTCAGTAAACC
chr4	116318202	116318614	116098753	116099165	+	24	412	2	L1PA3	"COLO2T,COLO2N"	29	422	L1PA3				c4p116318408FS	AAACGTAATGACCGCTAAAAATAG	c4p116318408ES	ACTAGAAATATCATTTGACCCAGC
chr4	117129354	117129994	116909905	116910545	-	15	640	3	noL1	"COLO2T,COLO2N"	13	647	"AT_rich,AluY"				c4p117129674FS	TAAAAACTTAAAATGCCAAAAACC	c4p117129674ES	CAAGGTTATGTTTTCAATCAGTTG
chr4	117137953	117138189	116918504	116918740	+	13	236	4	L1PA4	"COLO2T,COLO2N"	1	65	"L1PA4,MER50"				c4p117138071FS	CAGGCAGTTGTTAACTGTTTCTC	c4p117138071ES	GAAATGTTATAAAACAGCAGAGGC
chr4	117344214	117344515	117124765	117125066	-	34834	301	67	L1HS	"COLO2T,COLO2N"	38186	285	"(CA)n,L1HS"				c4p117344364FS	TGTGCAAATTAATATTTCTTGAAAAC	c4p117344364ES	GATGAGTTCATATCCTTTGTAGGG
chr4	117552302	117552897	117332853	117333448	+	969	595	6	L1PA3	"COLO2T,COLO2N"	994	318	"L1PA3,L1PA7,L1MEc"				c4p117552599FS	TATAACCAACTATTGCATGAAAGC	c4p117552599ES	GGGAGATATACCTGATGCTAGATG
chr4	117583339	117583555	117363891	117364107	+	25298	216	25	L1PA4	"COLO2T,COLO2N"	34814	228	L1PA4				c4p117583447FS	TTTAAATGAGAATAGTGATCGCAC	c4p117583447ES	CAAATGTCCAACAATGATAGACTG
chr4	117828269	117828852	117608821	117609404	+	48	583	7	noL1	"COLO2T,COLO2N"	16	580	"MER21C,MER61A,L1PA2,(A)n"				c4p117828560FS	TTATTAAACCTGAGAGAGGTCTGG	c4p117828560ES	GCTGCTATAAAGACACATGCATAC
chr4	118984811	118984944	118765363	118765496	+	284	133	2	noL1	"COLO2T,COLO2N"	494	133		"LINE:Ewing,Iskow,Stewart"			c4p118984877FS	TGGCTTTTGGATACTTAGAAAGAG	c4p118984877ES	AAGTAAAGGAAAATTAAGGCCAAC
chr4	121088954	121089356	120869506	120869908	-	716	402	11	L1HS	"COLO2T,COLO2N"	900	391	"AluSz6,L1HS,L1MC4,(TTTG)n"	LINE:dbRIP			c4p121089155FS	GCAAGAGGAATCCATGTTAACTAC	c4p121089155ES	TCATTCTCAGTAAACTATCGCAAG
chr4	121306556	121306912	121087106	121087462	+	84	356	12	L1HS	"COLO2T,COLO2N"	67	193	"L1HS,L1PB4"				c4p121306734FS	ATACTAATTTCTTTTCCTTTGGGC	c4p121306734ES	TGATAACTAATGAAACCCTTCTCC
chr4	121341425	121341685	121121975	121122235	-	239	260	10	L1PA3	"COLO2T,COLO2N"	551	259	"L1PA3,(T)n"				c4p121341555FS	TATAAAGGGGTCAATTAAGCAAAG	c4p121341555ES	TTCTAGTTTTATTCCCTTGTGGTC
chr4	122451660	122452077	122232210	122232627	+	339	417	13	L1HS	"COLO2T,COLO2N"	185	493	"AluSx1,(A)n"				c4p122451868FS	TTTTAGATGAATCTCAGTCTGCTG	c4p122451868ES	ACACCGCATATTCTCACTCATAG
chr4	122660435	122660827	122440985	122441377	-	30	392	2	L1PA4	"COLO2T,COLO2N"	9	116	L1PA4				c4p122660631FS	ACTCAAGTCTCTCAGAAAGCAAAG	c4p122660631ES	CACAAAGGACTATAAATCATGCTG
chr4	123696335	123696516	123476885	123477066	-	39	181	4	L1PA3	"COLO2T,COLO2N"	15	76	"LTR16E1,L1PA3"				c4p123696425FS	TATCAAAATCAGCAGAATTCATTG	c4p123696425ES	CCTTCAAAAGGAAGTACATAAAGG
chr4	123792958	123793324	123573508	123573874	-	6535	366	31	L1HS	"COLO2T,COLO2N"	11651	418	"L1HS,(T)n"	LINE:dbRIP	BC045668		c4p123793141FS	AAATACAGACAGCTTAACTTTGGC	c4p123793141ES	TCATTCTCAGTAAACTATCGCAAG
chr4	125162828	125163042	124943378	124943592	-	42	214	3	L1HS	"COLO2T,COLO2N"	27	246	"L1HS,AT_rich,MIRb"	LINE:dbRIP			c4p125162935FS	GTAATGAGAAATTCAAAGATGCTG	c4p125162935ES	TCATTCTCAGTAAACTATCGCAAG
chr4	125295653	125296059	125076203	125076609	+	2598	406	16	L1HS	"COLO2T,COLO2N"	1619	450	"L1HS,(A)n,MIR3"				c4p125295856FS	AGACCAAATACTCTCTTCAAGCAC	c4p125295856ES	TCATTCTCAGTAAACTATCGCAAG
chr4	126888358	126888491	126668908	126669041	-	140	133	2	L1PA3	"COLO2T,COLO2N"	125	231	L1PA3				c4p126888424FS	TAAGCCTAGTAATTTCCCAGAGTG	c4p126888424ES	CAAATGTCCAACAATGATAGACTG
chr4	127070670	127071076	126851220	126851626	+	1529	406	22	L1PA2	"COLO2T,COLO2N"	1593	366	"L1MA1,L1PA2"				c4p127070873FS	TAGTTTTCTTTCGGTTAAATCTGC	c4p127070873ES	TGGAAATCATCATTCTCAGTAAAC
chr4	127815670	127816113	127596220	127596663	+	535	443	3	noL1	"COLO2T,COLO2N"	969	666	L1PA6	"LINE:dbRIP,Ewing"			c4p127815891FS	TAGGTATTTCTCCTAATGCTGTCC	c4p127815891ES	AAAATTTTTCAATCTACCCATCTG
chr4	128119924	128120108	127900474	127900658	+	10	184	2	L1PA6	"COLO2T,COLO2N"	7	189	"Tigger1,L2,L1PA6"				c4p128120016FS	AATATGACCACTTCTCATCACCTC	c4p128120016ES	GAGGAAGTAATGGCAGAGTTACTG
chr4	128167103	128167777	127947653	127948327	+	2067	674	7	L1PA2	"COLO2T,COLO2N"	820	561	"L1PA3,L1PA2,AluY"				c4p128167440FS	ATTTTAATAGAGACGGGGTTTCAC	c4p128167440ES	AGGGATAGCACTGGGAGATATAC
chr4	128735507	128735705	128516057	128516255	+	11	198	4	L1PA2	"COLO2T,COLO2N"	9	126	"L1PA2,Tigger3b"				c4p128735606FS	TACTTTAGGCAATTACAACCACTG	c4p128735606ES	CAAATGTCCAACAATGATAGACTG
chr4	128823360	128823557	128603910	128604107	+	32	197	3	L1PA3	"COLO2T,COLO2N"	7	68	"L1PA3,AT_rich"		"INTU,KIAA1284"		c4p128823458FS	TGAGCATTTAAGAGAAGGGTAAAG	c4p128823458ES	AAATTGGAAATCATCATTCTATCG
chr4	129184520	129184857	128965070	128965407	-	319	337	5	noL1	"COLO2T,COLO2N"	707	406	L2c	"LINE:Ewing,Iskow"			c4p129184688FS	CCTCCTGAGTAGCTGGGATTAC	c4p129184688ES	CCGGCTAACTTTTTGTATTTTTAG
chr4	129360374	129360501	129140924	129141051	+	24	127	3	L1PA2	"COLO2T,COLO2N"	4	65	"L1PA2,AluSp"		"LARP2,DKFZp434K245"		c4p129360437FS	AGGAAAAGATTAAACACACAAAGG	c4p129360437ES	CAAATGTCCAACAATGATAGACTG
chr4	130835586	130835793	130616136	130616343	+	6900	207	34	L1HS	"COLO2T,COLO2N"	7107	408	"L1HS,(A)n"				c4p130835689FS	TAAATGTGCTGATTTGCTTAACAC	c4p130835689ES	TCATTCTCAGTAAACTATCGCAAG
chr4	131156081	131156992	130936631	130937542	-	4782	911	18	L1HS	"COLO2T,COLO2N"	1331	361	"L1HS,(T)n,MIRb"				c4p131156536FS	AAGAAGTAATGCCTGAAATAATGG	c4p131156536ES	TACCCAAAGGACTATAAATCATGC
chr4	131565778	131566141	131346328	131346691	+	14	363	6	L1PA4	"COLO2T,COLO2N"	6	578	"AluYb8,MLT1A0"	Alu:Hormozdiari			c4p131565959FS	TAATGCTAAATGACGAGTTAATGG	c4p131565959ES	GAAACCCCGTCTCTACTAAAAATAC
chr4	131953390	131953680	131733940	131734230	-	303	290	3	L1PA4	"COLO2T,COLO2N"	401	303	L1PA4				c4p131953535FS	TTTACAAGCTTTCAACAACAGAAC	c4p131953535ES	AAAAAGTTTGAGAATGATGGTTTC
chr4	132233756	132234304	132014306	132014854	-	20	548	3	L1PA4	"COLO2T,COLO2N"	32	174	Tigger13a				c4p132234030FS	AAATAAGCAGGTTATAGCCTTACG	c4p132234030ES	AATGCTAAATGACAAGTTAATGGG
chr4	132400752	132400935	132181302	132181485	-	814	183	11	noL1	"COLO2T,COLO2N"	953	188	MER89	"LINE:Ewing,Iskow,Stewart"			c4p132400843FS	CTAAAATGAGGTTTTTAAAGTGCC	c4p132400843ES	TCCAAGTCATGATACCATTACAAC
chr4	133029613	133029746	132810163	132810296	-	41294	133	25	noL1	"COLO2T,COLO2N"	40585	134	T-rich		BC041865		c4p133029679FS	AGAAAGTGTAGTGGAAAAGAGAGG	c4p133029679ES	TTTGCTTTGGTATACATAGTTTGC
chr4	133519858	133520553	133300408	133301103	-	31	695	7	noL1	"COLO2T,COLO2N"	118	696	L2a				c4p133520205FS	TGACTAATACTGGATTGGCTTATG	c4p133520205ES	CTGTGCATTTTCTTTTATGTTGTC
chr4	134090991	134091244	133871541	133871794	+	132	253	4	L1PA2	"COLO2T,COLO2N"	122	253	"L1PA2,(A)n,MSTA"				c4p134091117FS	TTCCTTTTACTAATTTTGGGTTTG	c4p134091117ES	TCATTCTCAGTAAACTATCGCAAG
chr4	134195756	134195873	133976306	133976423	+	66	117	5	L1PA4	"COLO2T,COLO2N"	33	67	L1PA4				c4p134195814FS	TACACATCACTGCACAAAACTATG	c4p134195814ES	CGTATGTTTATTGTGGCACTATTC
chr4	134815946	134816303	134596496	134596853	+	302	357	5	noL1	"COLO2T,COLO2N"	328	464		"LINE:Ewing,Iskow,Stewart"			c4p134816124FS	TAAAGGAAATACCAACATGAGATG	c4p134816124ES	CCTCAAACTCTTTCCTTAAAACAC
chr4	134927127	134927301	134707677	134707851	-	37	174	6	L1PA2	"COLO2T,COLO2N"	20	197	"L1PA2,AT_rich"				c4p134927214FS	TGTTAAGAAAACCATAAAGCAGAG	c4p134927214ES	TCATTCTCAGTAAACTATCGCAAG
chr4	135429320	135429745	135209870	135210295	-	82	425	4	L1PA4	"COLO2T,COLO2N"	470	425	L1PA4				c4p135429532FS	AGCAGTTCCAGTAGAATTTCAAAG	c4p135429532ES	AACTAGAAATACCATTTGACCCAG
chr4	135964299	135964402	135744849	135744952	-	265	103	2	noL1	COLO2T	0	0					c4p135964350FS	AGGGTTTAGGTTGTACAAAACATC	c4p135964350ES	TGTAGACATGTAACTGCAAGAATG
chr4	136225922	136226183	136006472	136006733	+	1669	261	18	L1HS	"COLO2T,COLO2N"	144	387	"L1HS,HERVL74-int"				c4p136226052FS	AACAAAATGAGACCTCATAAATCC	c4p136226052ES	GATGAGTTCATATCCTTTGTAGGG
chr4	136856581	136856702	136637131	136637252	-	15	121	2	L1PA3	"COLO2T,COLO2N"	13	65					c4p136856641FS	AAGGAGCAATAGTTTTCTTGATTG	c4p136856641ES	AATGTCCAACAATGATAGACTGG
chr4	137433722	137434167	137214272	137214717	-	404144	445	27	L1HS	"COLO2T,COLO2N"	355825	256	"L1HS,AluSq2,ERVL-E-int"	LINE:dbRIP			c4p137433944FS	GAATAGCTGAAATTACAGGTGCC	c4p137433944ES	TCATTCTCAGTAAACTATCGCAAG
chr4	137837954	137838707	137618504	137619257	-	12	753	2	noL1	"COLO2T,COLO2N"	2	65	"L1M2,MLT1E3,AluSp,L1MA5"				c4p137838330FS	GTGAGTCAAGATCACACCATTG	c4p137838330ES	AGTTTCATAAGTCAGAAATCCAGC
chr4	138396816	138397232	138177366	138177782	+	2886	416	9	noL1	"COLO2T,COLO2N"	4776	417	MER31-int	"LINE:Ewing,Iskow,Stewart"			c4p138397024FS	AAATTAATCCTCTCTCATCTGTGG	c4p138397024ES	AAAAGACTAAGCCAAATGAACAAG
chr4	140164652	140164983	139945202	139945533	-	76	331	3	noL1	"COLO2T,COLO2N"	254	66	AluJr		CCRN4L		c4p140164817FS	TCTGAACTTTTAAAGACCATTGTG	c4p140164817ES	CAAATAAAACAACATGCAAAACTC
chr4	141662626	141662813	141443176	141443363	+	176	187	5	L1PA4	"COLO2T,COLO2N"	74	277	L1PA4				c4p141662719FS	GAGAATGCTGATATGTTTTGTCAG	c4p141662719ES	CAAATGTCCAACAATGATAGACTG
chr4	142037243	142037914	141817793	141818464	+	9264	671	32	L1HS	"COLO2T,COLO2N"	6400	528	L1HS		RNF150		c4p142037578FS	CTCAATCACAGTTTCTAGGGGTAG	c4p142037578ES	TGGGAGATATACCTAATGCTAGATG
chr4	143213034	143213211	142993584	142993761	-	10	177	6	L1PA5	"COLO2T,COLO2N"	1	65	"L4,L1PA5"		INPP4B		c4p143213122FS	GAATACTATGCAGCCATAAAAAGG	c4p143213122ES	AGAGGAAGGACTTTGGAATTAGAC
chr4	144246841	144247248	144027391	144027798	+	1469	407	27	L1PA2	"COLO2T,COLO2N"	926	415	"L1PA2,A-rich"				c4p144247044FS	GAAAAACATAAATGAATGCTAGGC	c4p144247044ES	TCATTCTCAGTAAACTATCGCAAG
chr4	144586161	144586295	144366711	144366845	-	10	134	2	L1PA16	"COLO2T,COLO2N"	20	170	L1PA16		GAB1		c4p144586228FS	GAACTAATTTTACATTCCCACCAG	c4p144586228ES	TCATTCTCAGTAAACTATCGCAAG
chr4	145723968	145724269	145504518	145504819	+	15	301	5	L1PA2	"COLO2T,COLO2N"	13	260	"L1PA2,(CAGAGA)n,A-rich"				c4p145724118FS	AATGATAATGAGCAATAAGGAAGG	c4p145724118ES	ATTTGCTTAACTGTCTTCATTTCC
chr4	145944310	145944430	145724860	145724980	-	81	120	2	L1PA4	"COLO2T,COLO2N"	52	172	"L1PB3,L1MB4"				c4p145944370FS	AGGATTGCTTTTTCTAATTCTGTG	c4p145944370ES	ATTCTCACTCATAGGTTGGAATTG
chr4	145952292	145952434	145732842	145732984	+	19	142	3	L1PA2	COLO2T	0	0	"L1PA2,L1PA7"				c4p145952363FS	CAAAAGTTTTCTCCCATTCTGTAG	c4p145952363ES	CAAATGTCCAACAATGATAGACTG
chr4	146038089	146038202	145818639	145818752	+	34	113	3	L1PA3	"COLO2T,COLO2N"	20	65	"L1PA3,L1MD"				c4p146038145FS	AAGAACTGGAATACAATCAAGGAG	c4p146038145ES	CGTATGTTTATTGTGGCACTATTC
chr4	146541433	146541724	146321983	146322274	-	16	291	3	noL1	"COLO2T,COLO2N"	2	738	L1P2				c4p146541578FS	AATTATGTAATGGCCTTCTTTGTC	c4p146541578ES	CATTCAAGTTCAGCAAATACAGAG
chr4	147444777	147445018	147225327	147225568	+	9634	241	12	noL1	"COLO2T,COLO2N"	11752	244	L1P1	"LINE:Beck,dbRIP,Ewing,Stewart"	SLC10A7		c4p147444897FS	ACCACATACTTGGAAGTAAAGCTC	c4p147444897ES	TCTTTACAACAACCCTTTACGATAG
chr4	147446194	147446582	147226744	147227132	+	414	388	6	L1PA3	"COLO2T,COLO2N"	175	367	AT_rich		SLC10A7	"SLC10A7.5,SLC10A7.6,SLC10A7.3"	c4p147446388FS	TGCAAATCAATATTTTTCTCAATC	c4p147446388ES	TTCTCAGTAAACTATCGCAACAAC
chr4	147762587	147762934	147543137	147543484	+	25123	347	28	L1HS	"COLO2T,COLO2N"	36459	384	"L1HS,FordPrefect"	LINE:dbRIP			c4p147762760FS	CCAAATGAGGTAGAGTGATTTATTG	c4p147762760ES	GATGAGTTCATATCCTTTGTAGGG
chr4	151595349	151595451	151375899	151376001	-	23	102	3	L1PA2	"COLO2T,COLO2N"	13	102	L1PB3		"LBA,DKFZp686K03100,LRBA"		c4p151595400FS	CTGGGACAGAATTCTAAAAAGATG	c4p151595400ES	AAAAACCAAACACCACATATTCTC
chr4	151988621	151989184	151769171	151769734	+	42	563	3	noL1	"COLO2T,COLO2N"	44	65	"MER5A1,AluSx,FLAM_A"		LRBA		c4p151988902FS	GTAGTAGTTGGTAAGTTGGATGGG	c4p151988902ES	TACTTAGGGAAGAAGTGTTTCCAG
chr4	152559719	152560234	152340269	152340784	-	1734320	515	94	L1HS	"COLO2T,COLO2N"	1508364	366	"L1HS,MLT2B4"	"LINE:dbRIP,Iskow"	FAM160A1		c4p152559976FS	TTTTGTTTCTCTTTCCAGTTTTTC	c4p152559976ES	TGGGAGATATACCTAATGCTAGATG
chr4	152952083	152952274	152732633	152732824	-	5518	191	7	noL1	"COLO2T,COLO2N"	4206	258		"LINE:Ewing,Stewart"			c4p152952178FS	CAGCAAATATTCTAGGTTTTGTGG	c4p152952178ES	AGGGAGATGTTTCTCTAACTTTCC
chr4	155530411	155531144	155310961	155311694	-	21	733	7	L1PA2	"COLO2T,COLO2N"	5	732	"(CA)n,L1PA2,AT_rich"		DCHS2		c4p155530777FS	AATCAAACAAAACAAAAACCTCTC	c4p155530777ES	AACTTGTTTTTCAGGAGTATCTGG
chr4	156268173	156268356	156048723	156048906	-	25	183	3	L1PA4	"COLO2T,COLO2N"	6	233	"L1MA4,L1PA4"				c4p156268264FS	CAATATGTAATGATCAAATCAGGG	c4p156268264ES	TAAGTCCAATTAAGGCTCTTTTTC
chr4	157190599	157190859	156971149	156971409	+	115	260	14	L1HS	"COLO2T,COLO2N"	88	260	"L1HS,AT_rich,L1MA5"				c4p157190729FS	AAAGGATTATGTCAAGATAGACGG	c4p157190729ES	CAAATGTCCAACAATGATAGACTG
chr4	158006246	158006436	157786796	157786986	-	79	190	4	L1PA4	"COLO2T,COLO2N"	167	320	Helitron3Na_Mam		PDGFC		c4p158006341FS	CATTTCACATACTTCCAACGTAAC	c4p158006341ES	TAATGCTAAATGACACGTTAATGG
chr4	158261001	158261150	158041551	158041700	+	22	149	2	L1PA3	"COLO2T,COLO2N"	16	153	(TAAAA)n		GLRB		c4p158261075FS	ATAGTACTTAGAAAACCCATTGCG	c4p158261075ES	ATGATAGGCTGGATTAAGAAAATG
chr4	158315344	158315491	158095894	158096041	-	21	147	5	L1PA3	"COLO2T,COLO2N"	19	147	"AT_rich,L1MA4"				c4p158315417FS	GTGATTGGAGTACTAAGTTCAGCC	c4p158315417ES	CAAATGTCCAACAATGATAGACTG
chr4	158782206	158782466	158562756	158563016	-	41	260	5	L1PA3	"COLO2T,COLO2N"	13	146	"L1PA3,AT_rich"				c4p158782336FS	GCTGGCTAAAGACTCTAATTTTTG	c4p158782336ES	TCATTCTCAGTAAACTATCGCAAG
chr4	158895424	158896160	158675974	158676710	-	12	736	6	noL1	"COLO2T,COLO2N"	13	74	L1PA7				c4p158895792FS	TCTAAGACATTGGTTAATAACGAGG	c4p158895792ES	ATTAGAGAAATGCAAATCAAAACC
chr4	159126223	159126772	158906773	158907322	-	150	549	8	noL1	"COLO2T,COLO2N"	9	67	AluSz	"LINE:Ewing,Stewart"			c4p159126497FS	AGTTGGCTTGTAAATAATTCCATC	c4p159126497ES	ATGCTTCTTTAGAGTAAAAGTGCG
chr4	159648374	159648658	159428924	159429208	+	14	284	2	L1PA3	"COLO2T,COLO2N"	32	75	"L1PA3,L1MA10"				c4p159648516FS	TGGGAGTTCAGGTATCTCTTCTAC	c4p159648516ES	TCTACAAGAAAACATAGGGGAAAG
chr4	160950940	160951336	160731490	160731886	+	350	396	13	L1PA3	"COLO2T,COLO2N"	376	396	"L1PA3,MIRb"				c4p160951138FS	ACCTGTTCCAGCTTAAACAACTAC	c4p160951138ES	TCATTCTCAGTAAAGTATCGCAAG
chr4	161230877	161230979	161011427	161011529	+	13	102	3	noL1	"COLO2T,COLO2N"	12	102	"L2a,AluSz6"				c4p161230928FS	TGTGTTCACTTTCTAACTCTCCAC	c4p161230928ES	CAGTGTGAAAACGGACTAATACAG
chr4	161721919	161722039	161502469	161502589	-	15	120	3	L1PA4	"COLO2T,COLO2N"	11	120	"L1PA4,MLT1A0"				c4p161721979FS	AAACAGAGGCTGAAGTTACATGAC	c4p161721979ES	CATAAAAATGATGAGTTCATGTCC
chr4	162668626	162668984	162449176	162449534	+	30	358	3	L1PA3	"COLO2T,COLO2N"	11	359	"L1PA3,AT_rich"		FSTL5		c4p162668805FS	TGCAAAGAGTTAACAAAACAAATG	c4p162668805ES	ACTAGAAATACCATTTGATCCAGC
chr4	162776779	162777112	162557329	162557662	-	12	333	3	L1PA2	"COLO2T,COLO2N"	4	69	L1PA2		FSTL5		c4p162776945FS	CAACTTTGATTTCACATACCTCTG	c4p162776945ES	TCATTCTCAGTAAACTATTGCAGG
chr4	163606758	163607167	163387308	163387717	-	104477	409	47	L1HS	"COLO2T,COLO2N"	90489	410	"L1M4b,L1HS"				c4p163606962FS	CTAGTTTGATTTCACTGTGGTCTG	c4p163606962ES	TCATTCTCAGTAAACTATCGCAAG
chr4	164346641	164346812	164127191	164127362	+	12	171	2	L1PA4	"COLO2T,COLO2N"	14	209	"L2a,L1PA4"				c4p164346726FS	CTTAGTCACCTTCTGTTCATGTTG	c4p164346726ES	TTCCTCTAAAATGTAAGCTCCAAG
chr4	164877595	164877865	164658145	164658415	-	152	270	22	L1HS	"COLO2T,COLO2N"	488	382	"L1HS,AT_rich,(T)n"	LINE:dbRIP	1-Mar		c4p164877730FS	TAGATGACATGAAATTGTATCACG	c4p164877730ES	ATGATGAGTTCATGTCCTTTGTAG
chr4	165497326	165497576	165277876	165278126	+	26	250	3	L1PA2	"COLO2T,COLO2N"	198	248	"L1PA13,L1PA2"		1-Mar		c4p165497451FS	GTTTAACTTGCTGAAACTGATTTG	c4p165497451ES	CAAATGTCCAACAATGATAGACTG
chr4	165654478	165654587	165435028	165435137	+	57	109	2	L1PA3	"COLO2T,COLO2N"	12	83	"L1PA3,L2b"				c4p165654532FS	CACACAGAAGAACAACCTATATGC	c4p165654532ES	TGAGTCTTAGAAGAGGGAGATCAG
chr4	167588245	167588583	167368795	167369133	-	504614	338	77	L1HS	"COLO2T,COLO2N"	521798	383	L1HS				c4p167588414FS	TTTTAAAAGAGTGAAGAAAAAGCAG	c4p167588414ES	GATGAGTTCATATCCTTTGTAGGG
chr4	167716550	167716932	167497100	167497482	+	4843	382	14	L1HS	"COLO2T,COLO2N"	7790	395	"(TA)n,L1HS,AT_rich"				c4p167716741FS	GCACTGGTTGTTATTCTATGTGAG	c4p167716741ES	GATGAGTTCATATCCTTTGTAGGG
chr4	167744309	167744431	167524859	167524981	+	255	122	14	noL1	"COLO2T,COLO2N"	279	79	L1MC1				c4p167744370FS	TTTTTCTCTGCTTTTTAGTTTTGG	c4p167744370ES	TTTTGTTTTTAACAATGACTTCCC
chr4	167919586	167920114	167683011	167683539	+	8737	528	14	L1HS	"COLO2T,COLO2N"	11018	528	L1HS	LINE:dbRIP	SPOCK3		c4p167919850FS	CCAGAGAAGTTTTTGTCTTTCATC	c4p167919850ES	ACACCGCATATTCTCACTCATAG
chr4	169607305	169607601	169370730	169371026	+	2397	296	32	L1HS	"COLO2T,COLO2N"	4083	739	"L1MEe,L1HS,(A)n,LTR8"		DDX60L		c4p169607453FS	TTTTACAATAGTGGTTTTATCCCC	c4p169607453ES	TCATTCTCAGTAAACTATCGCAAG
chr4	170518122	170518528	170281547	170281953	-	588723	406	77	noL1	"COLO2T,COLO2N"	541813	495	L1M1	"LINE:Ewing,Iskow"			c4p170518325FS	GTTATGACATTCTGTGCTTTTCTG	c4p170518325ES	TGTGATCTTTCAAACAGAGAATTG
chr4	170672238	170673287	170435663	170436712	-	1734781	1049	96	L1HS	"COLO2T,COLO2N"	1991520	1049	"L1MD2,L1HS"		NEK1		c4p170672762FS	CGAATTTTATAGGATTGGTTCATC	c4p170672762ES	GAGCTGAAAGAAGAAGTAAACAGG
chr4	170702188	170702823	170465613	170466248	-	11	635	5	L1PA2	"COLO2T,COLO2N"	25	373	"L1PA2,L1PA7"		NEK1		c4p170702505FS	CCAGTATTTTATTGAGGATTTTCG	c4p170702505ES	TAAGGCTAGATGACGAGTTAGTGG
chr4	171412148	171412535	171175573	171175960	-	12	387	3	L1PA3	COLO2T	0	0	"(TTTTA)n,AT_rich,AluYc,MSTB"				c4p171412341FS	GTGACATGGTTTGGATATTTGTC	c4p171412341ES	TCATCATTCTCAGTAAACTATCGC
chr4	171513607	171513943	171277032	171277368	-	262	336	4	noL1	"COLO2T,COLO2N"	77	325	"L1PA2,L1PA5"				c4p171513775FS	TTTTGTAGATTGTGCATATTAGCG	c4p171513775ES	TCAGGGATCTAGAACTGGAAATAC
chr4	172241488	172241595	172004913	172005020	-	456	107	5	noL1	COLO2T	0	0	L1MEc				c4p172241541FS	TGTTGTAATGTAGGTCTCCTGTTG	c4p172241541ES	AAATTGTTAGGTATTTGAAGCAGC
chr4	172453715	172454160	172217140	172217585	-	30	445	7	L1HS	"COLO2T,COLO2N"	73	445	"L1HS,MER31-int"				c4p172453937FS	GCTTGTTCTCTCTTCCAGAAATAC	c4p172453937ES	TTCAAGAAATTCATTTTTACATGG
chr4	173336175	173336418	173099600	173099843	-	1629	243	6	L1PA2	"COLO2T,COLO2N"	1378	204	"L1PA2,L1PA7"		GALNTL6		c4p173336296FS	CTAATGAGAAAAGCAGGACCTAAC	c4p173336296ES	CAAATGTCCAACAATGATAGACTG
chr4	174272223	174272686	174035648	174036111	+	1642	463	15	noL1	"COLO2T,COLO2N"	1272	462	"L1PA13,AluSx"				c4p174272454FS	CTGTATTTTGAGCCTATGTGTGTC	c4p174272454ES	CTCAGTGACATACTCCACAAGAAG
chr4	175204114	175204380	174967539	174967805	+	26020	266	4	L1PA6	"COLO2T,COLO2N"	22950	119	"L1MEg,L1PA6"				c4p175204247FS	TTTTTCTATGTGATGGCTTTTAGG	c4p175204247ES	GGATGAGTTTATGTCCTTCTTAGC
chr4	176452017	176452767	176215021	176215771	+	218	750	7	noL1	"COLO2T,COLO2N"	333	753	"L1PA3,AT_rich,L3"				c4p176452392FS	CAATTACTAGCTCCAGCTACTTCC	c4p176452392ES	ATCCTCTCACTTAACAAAGCAGTC
chr4	177231026	177231293	176994032	176994299	-	58	267	11	L1PA4	"COLO2T,COLO2N"	96	267	"L2a,L1PA4"		WDR17		c4p177231159FS	TTAAAATTCCTTTCATTTTTCTGC	c4p177231159ES	ATACACCATGAAATACTATGCAGC
chr4	178230012	178230463	177993018	177993469	-	602	451	8	L1PA2	"COLO2T,COLO2N"	679	473	L1PA2				c4p178230237FS	AAATGAGCACAGTTAGGAATCAAC	c4p178230237ES	TCATTCTCAGTAAACTATCGCAAG
chr4	179159182	179159492	178922188	178922498	+	148	310	6	L1PA3	"COLO2T,COLO2N"	274	349	"L1PA3,L1MC4"				c4p179159337FS	TTTTCTCAGTGTGTTTTCTCTCAG	c4p179159337ES	TGGAAATCATCATTCTCAGTAAAC
chr4	180554090	180554473	180317096	180317479	-	19	383	4	noL1	"COLO2T,COLO2N"	13	383	"AluSz6,L1MEf,AluY"				c4p180554281FS	AATGTTACAACACAACAACAAAGG	c4p180554281ES	CATACCTATTCCTTTGTGAAAACC
chr4	181095507	181095790	180858513	180858796	+	4316	283	16	L1PA2	"COLO2T,COLO2N"	7745	294	"L1PA2,L2"				c4p181095648FS	AGAATGACCTACTGCTTTATCCAG	c4p181095648ES	CCATCATTCTCAGTAAACTATTGC
chr4	182113792	182113892	181876798	181876898	-	1836	100	25	L1HS	"COLO2T,COLO2N"	438	99	"L1HS,(T)n"	LINE:dbRIP			c4p182113842FS	CTTTTGTTGCCAGTTTAAATATCC	c4p182113842ES	CCAACAATGATAGACTGGATTAAG
chr4	182931746	182932204	182694752	182695210	-	103309	458	51	L1HS	"COLO2T,COLO2N"	89602	465	"L1HS,MIR3"				c4p182931975FS	AGAGTTGAAATGCACCTTAAAGAC	c4p182931975ES	TCATTCTCAGTAAACTATCGCAAG
chr4	183617696	183617813	183380702	183380819	+	1323	117	5	noL1	COLO2T	0	0			ODZ3		c4p183617754FS	TAATAAAACCTTCAAGTGGTCTCC	c4p183617754ES	TATTCCCGAGAGAGTATTTACCAC
chr4	183774624	183774818	183537630	183537824	+	16	194	4	L1PA2	"COLO2T,COLO2N"	659	195	"L1PA2,AluYk12"		ODZ3		c4p183774721FS	ATTCTGAATTTTAAGTTCCAAAGC	c4p183774721ES	CATTGTTCAATTACCACCTATGAG
chr4	183937081	183937254	183700087	183700260	-	21	173	4	L1PA2	"COLO2T,COLO2N"	11	176	"L1PA2,AT_rich"		ODZ3		c4p183937167FS	ATTCTTTTCAAGCATATTCCAGAG	c4p183937167ES	TAGACTGGATTAAGAAAATGTGGC
chr4	184434774	184435089	184197780	184198095	-	18	315	3	L1PA3	"COLO2T,COLO2N"	1	65	L1MB8		"WWC2,BOMB"		c4p184434931FS	TTTGGGTTTGATCCTATTATCTTC	c4p184434931ES	TGGAAATCATCATTCTCAGTAAAC
chr4	185928813	185929204	185691819	185692210	+	31	391	5	L1PA4	"COLO2T,COLO2N"	15	114	"L1PA4,AluSz,LTR51"		ACSL1		c4p185929008FS	AACTTGCTGGGTACTAGGATACTG	c4p185929008ES	AAGCAAGGAAAACAAAATTAAATG
chr4	188834221	188834342	188597227	188597348	-	13	121	6	L1PA4	"COLO2T,COLO2N"	7	120	"L2b,L1PA4"				c4p188834281FS	GTATTGGAGAAACTTTACTCTGGC	c4p188834281ES	TAAGAAAAGGTGGCACATATACAC
chr4	189716288	189716470	189479294	189479476	-	17	182	3	L1PA2	"COLO2T,COLO2N"	1	65	"Tigger2b_Pri,L1PA2"				c4p189716379FS	TGAAGAAGATGAGAATTAAGACCC	c4p189716379ES	CAAATGTCCAACAATGATAGACTG
chr4	190301203	190301675	190064209	190064681	+	6487	472	30	L1HS	"COLO2T,COLO2N"	3117	472	"THE1B,L1HS,LTR16E2"	LINE:dbRIP			c4p190301439FS	AACAAAGCCATTCTTCTATGTCTC	c4p190301439ES	TCATTCTCAGTAAACTATCGCAAG
chr4	190896701	190897094	190659707	190660100	+	5218	393	21	noL1	"COLO2T,COLO2N"	1558	463	L2a	"LINE:Ewing,Iskow,Stewart"			c4p190896897FS	AGCCAAAATTTGAAAAAGATAAAG	c4p190896897ES	CTCCAAACCCTTATTCTTAGTCTC
chr4	191081689	191081828	190844695	190844834	+	1665	139	5	noL1	"COLO2T,COLO2N"	493	138	L1M1		BC087857		c4p191081758FS	TTGTAGAATTTGTCAGTGAAAACC	c4p191081758ES	TTATGAGATACAGCAAAACAGTCC
chr5	1698772	1699027	1645772	1646027	+	3323	255	4	noL1	"COLO2T,COLO2N"	1980	67	L1PA5				c5p1698899FS	GATGTGTGGTATTATTTCTGAGGC	c5p1698899ES	GGTGGAGACCAGAGTCGTGAG
chr5	2024523	2024909	1971523	1971909	+	4228	386	17	L1HS	"COLO2T,COLO2N"	6866	350	"L1HS,AluSz"	LINE:dbRIP			c5p2024716FS	ATGAACCACGAAAATAGAAAACTC	c5p2024716ES	GATGAGTTCATATCCTTTGTAGGG
chr5	3533936	3534194	3480936	3481194	+	11	258	3	L1PA3	"COLO2T,COLO2N"	7	260	"L1PA3,MIR3"		BC035019		c5p3534065FS	CATTCTGATGAATACACATTCCAG	c5p3534065ES	CAAATGTCCAACAATGATAGACTG
chr5	3561841	3561955	3508841	3508955	+	52	114	9	noL1	"COLO2T,COLO2N"	44	116	(A)n		BC035019		c5p3561898FS	GCTTATTCTGTATGGTGTTGTGAG	c5p3561898ES	CACAGTTCTCAGTGACGGTTATAG
chr5	3954478	3954633	3901478	3901633	+	263	155	2	L1PA2	"COLO2T,COLO2N"	171	89	L1PA2				c5p3954555FS	GAATATGATAATCCCATCTTCAGG	c5p3954555ES	GCTAGTGGTCTATCAATTTTGTTG
chr5	4352292	4352429	4299292	4299429	+	11	137	2	L1PA2	"COLO2T,COLO2N"	5	202	L1ME3				c5p4352360FS	GTACACAGCATTCGTAAGTACCAC	c5p4352360ES	TATGGAGAGTTAAAAGGCAAGAAC
chr5	7110652	7110790	7057652	7057790	+	307	138	11	L1PA2	"COLO2T,COLO2N"	327	149	"L1PA2,HERVH-int"				c5p7110721FS	CCTACTTCGCTTACACTCACTCTC	c5p7110721ES	CAAATGTCCAACAATGATAGACTG
chr5	7229785	7229963	7176785	7176963	+	10	178	2	L1PA3	"COLO2T,COLO2N"	6	65	"L1PA3,L1MB7"				c5p7229874FS	AGTACAGAATGTAGGCTTCTCAGG	c5p7229874ES	GACTGGATTAAGAAAATATGGCAC
chr5	7656296	7656987	7603296	7603987	-	15958	691	33	L1HS	"COLO2T,COLO2N"	19673	612	"L1HS,(T)n"		ADCY2		c5p7656641FS	AGTAGCAAAGTAGAAGTGTCCCAC	c5p7656641ES	TGGGAGATATACCTAATGCTAGATG
chr5	8074025	8074134	8021025	8021134	-	10	109	3	noL1	"COLO2T,COLO2N"	16	67	L1MCa				c5p8074079FS	TTAGCTGTATCCAGTCTACCAGTG	c5p8074079ES	GTACTGGCTTAGAAATACCCAAAC
chr5	8264848	8265053	8211848	8212053	-	30	205	3	L1HS	"COLO2T,COLO2N"	11	164	"L2c,L1HS"				c5p8264950FS	AAATGGAGTGTTGACTCTTTATGC	c5p8264950ES	TTCCTTAACTGATTCATTCCTTTC
chr5	8313395	8313746	8260395	8260746	+	12	351	4	L1PA3	"COLO2T,COLO2N"	13	240	L1PA3				c5p8313570FS	TTTTTAGTAGAGATGGGGTTTCAC	c5p8313570ES	ATGATGAGTTCATGTCCTTTGTAG
chr5	8327849	8328099	8274849	8275099	+	93	250	6	L1PA2	"COLO2T,COLO2N"	6	251	"L1PA2,AluSx3"				c5p8327974FS	CCCAGGTAATAAAGCTATCAATTC	c5p8327974ES	TCATCATTCTCAGTAAACTATCGC
chr5	8802508	8802942	8749508	8749942	+	9181	434	12	noL1	"COLO2T,COLO2N"	5074	447		"LINE:dbRIP,Ewing,Stewart"			c5p8802725FS	ATTTTATTGCTGAAATTGATCCAG	c5p8802725ES	AAACACTGAGCTTGGCTTAAATAC
chr5	9315946	9316459	9262946	9263459	+	2588	513	40	L1HS	"COLO2T,COLO2N"	3416	509	"MER1B,(TAAAAA)n,L1HS,AT_rich"		SEMA5A		c5p9316202FS	TAGATAACCTAGATCCCTCACTGC	c5p9316202ES	TCATTCTCAGTAAACTATCGCAAG
chr5	11444253	11444453	11391253	11391453	+	4403	200	6	noL1	"COLO2T,COLO2N"	2859	120		"LINE:Ewing,Iskow,Stewart"	CTNND2		c5p11444353FS	CAGTACCAGAGTTTTCTTCCTTTG	c5p11444353ES	AATCAGACTGGCAAACCTAGTTAC
chr5	12250215	12250547	12197215	12197547	-	39590	332	34	L1HS	"COLO2T,COLO2N"	34063	334	"L1HS,MER5A"				c5p12250381FS	TTTAGTTTTCCATCTCAAATCTCC	c5p12250381ES	GATGAGTTCATATCCTTTGTAGGG
chr5	12505733	12505963	12452733	12452963	-	124	230	8	L1HS	"COLO2T,COLO2N"	52	211	"L1HS,AT_rich"				c5p12505848FS	ACTTCCAGTGTCCAGAACTATGAC	c5p12505848ES	TCATTCTCAGTAAACTATCGCAAG
chr5	13475593	13475966	13422593	13422966	+	170	373	21	L1HS	"COLO2T,COLO2N"	458	374	"L1HS,AT_rich,(A)n,ERV3-16A3_I-int"				c5p13475779FS	AAATTCTAGATTGGCTGTTCAAAG	c5p13475779ES	TCATTCTCAGTAAACTATCGCAAG
chr5	13491158	13491539	13438158	13438539	+	272	381	6	L1PA3	"COLO2T,COLO2N"	1872	391	"L1PA3,L2b"				c5p13491348FS	ATTGTTTTTGGATTCTAAAGTTGG	c5p13491348ES	ACACTGCATATTCTCACTCATAGG
chr5	14862412	14863073	14809412	14810073	+	14270	661	38	L1HS	"COLO2T,COLO2N"	5169	666	"AmnSINE1,AluJb,L1HS"		ANKH		c5p14862742FS	CTTCTTCCCTCCTGTAGAGAAAC	c5p14862742ES	TAATGCTAGATGACACGTTAGTGG
chr5	15959207	15959684	15906207	15906684	-	204319	477	24	L1HS	"COLO2T,COLO2N"	238607	542	"L1HS,AT_rich"	"LINE:dbRIP,Ewing"	FBXL7		c5p15959445FS	GAACAGGAAGTGTAACCAACTAGG	c5p15959445ES	TCATTCTCAGTAAACTATCGCAAG
chr5	15966073	15966438	15913073	15913438	-	39	365	10	L1HS	"COLO2T,COLO2N"	30	353	"L1HS,AT_rich"		FBXL7		c5p15966255FS	TCTAGAATTAGGCCCATGTTACTC	c5p15966255ES	TAGCTCACAAATTCAACTTTCAAC
chr5	16025072	16025427	15972072	15972427	-	592	355	9	noL1	COLO2T	0	0	MLT2F				c5p16025249FS	TTGCACCATCAATAATGTGTAATC	c5p16025249ES	ATGTCTCGTTAAAGGCTTATTTTG
chr5	17442354	17442710	17389354	17389710	+	29	356	6	noL1	"COLO2T,COLO2N"	119	76	"HAL1b,AluSz"				c5p17442532FS	TTTTTAGTAGAGATGGGGTTTCAC	c5p17442532ES	AAAATGAGGTGACAGGGTAGAAG
chr5	18040749	18040865	18004992	18005108	-	14	116	2	L1PA7	"COLO2T,COLO2N"	3	65	L1PA7				c5p18040807FS	GTAATGACTCTCCTTAGCTCTTGG	c5p18040807ES	GAGGTACAAAGAAGAGCTGGTATC
chr5	20143568	20143680	20107811	20107923	-	22	112	2	L1PA4	"COLO2T,COLO2N"	9	104	"MLT1B,L1PA4"		CDH18		c5p20143624FS	CCAGCCTCTCTCTTATAACTTTCC	c5p20143624ES	ATGAGAATCATTTGAAACAGGAG
chr5	20679665	20680196	20643908	20644439	-	4006	531	17	L1HS	"COLO2T,COLO2N"	3531	505	"L1HS,AT_rich,L1PREC2,AluY,MIRb"		AK093362		c5p20679930FS	GTAGTCCCAGCTACTCAGGAGG	c5p20679930ES	ACACCGCATATTCTCACTCATAG
chr5	21503949	21504061	21468192	21468304	+	82	112	3	L1HS	"COLO2T,COLO2N"	93	270	"MER39,L1HS"		"LOC728411,GUSBP1"		c5p21504005FS	CTATTTTTATGCTCAGGTTCAGTG	c5p21504005ES	CTGTCTCAAAACAAAAACAAAAAG
chr5	23954530	23954910	23918773	23919153	+	428	380	11	L1PA4	"COLO2T,COLO2N"	438	405	"L1PA15,L1PA4"				c5p23954720FS	TGATAGTAATCCATTGTGGTTTTG	c5p23954720ES	TCATTCTCAGCAAACTATCACAAG
chr5	23990606	23990721	23954849	23954964	-	20	115	3	noL1	"COLO2T,COLO2N"	3	233	L1PREC2		AX747383		c5p23990663FS	ATTGAAAGTTTTTAACATGAAGGG	c5p23990663ES	ACCTAACATCACAGCTAAAGGAAC
chr5	24394361	24395012	24358604	24359255	-	24	651	3	noL1	"COLO2T,COLO2N"	42	644	"T-rich,AluYf4"				c5p24394686FS	CTAATCCATTCATCTGTGTATTTTG	c5p24394686ES	TTTGATGTACTTCTGATGTGTTCC
chr5	24406298	24406604	24370541	24370847	-	522	306	13	noL1	"COLO2T,COLO2N"	92	309	"L1HS,AT_rich,(T)n"	LINE:dbRIP			c5p24406451FS	TTTAATGTTTGGTAAGTTTGGATG	c5p24406451ES	GATGAGTTCATATCCTTTGTAGGG
chr5	24866251	24866445	24830494	24830688	-	18	194	2	L1PA3	"COLO2T,COLO2N"	10	65	(TTTA)n				c5p24866348FS	TTAAAAAGCAAATAAAACAAGTGG	c5p24866348ES	TTTCATCCAGTCACATGTAAAATC
chr5	25414319	25414452	25378562	25378695	-	63	133	6	L1PA2	"COLO2T,COLO2N"	53	143	"L1PA2,L1MEg"				c5p25414385FS	GGTATTTTGCAGTCATGCTATATG	c5p25414385ES	TTTATTGCAGGATTATTCACAATG
chr5	25622408	25622964	25586651	25587207	-	15	556	3	noL1	"COLO2T,COLO2N"	17	549	"L1ME3A,L1PB2"				c5p25622686FS	TTTTATATTTCTCACTGCTCCCTC	c5p25622686ES	ACAAAATGCTAAGCAGAAGAAGTC
chr5	25674322	25674620	25638565	25638863	-	559	298	10	L1PA2	"COLO2T,COLO2N"	390	298	L1MEg				c5p25674471FS	CAACAATTCCCCTGTTAAATTATG	c5p25674471ES	ATGATGAGTTCATGTCCTTTGTAG
chr5	26128894	26129305	26093137	26093548	+	59613	411	70	noL1	"COLO2T,COLO2N"	28783	243	"GA-rich,(TG)n,L1MC4"	LINE:Ewing			c5p26129099FS	AGTCCTGCTCAAATAATAAGCAAC	c5p26129099ES	CGTTAAATTCTGTCTCTTATGGTG
chr5	28002436	28002646	27966679	27966889	+	1219	210	6	L1PA6	"COLO2T,COLO2N"	1054	216	"L1M4b,L1PA6"				c5p28002541FS	GTTTGCTTGTTTATTTGTTCAGTG	c5p28002541ES	GAACCCTGATGATAAAGGTAGATG
chr5	28649469	28649826	28613712	28614069	+	21	357	5	L1PA15-16	"COLO2T,COLO2N"	6	361	"L1PA3,L1PA17"				c5p28649647FS	TAGAAGGACCTAAGATTACATGCC	c5p28649647ES	TCATTCTCAGTAAACTATCGCAAG
chr5	28657500	28657607	28621743	28621850	+	117	107	4	noL1	"COLO2T,COLO2N"	4	103	(A)n				c5p28657553FS	TAATGCTCTGTCTCATTTTCTTTG	c5p28657553ES	GGAATGCACCTGAGTAGATTTTAG
chr5	29148806	29148995	29113049	29113238	-	34	189	2	L1PA2	"COLO2T,COLO2N"	222	335	"L1PB1,THE1B"				c5p29148900FS	CCCTGAAGTTCTTTCTTCTACTTG	c5p29148900ES	AATGCTAGATGACAAGTTAGTGGG
chr5	30551657	30551779	30515900	30516022	+	2251	122	5	L1PA2	"COLO2T,COLO2N"	2820	70	L1PA2				c5p30551718FS	ATGCCTTACTGCAGTTTATTCTTC	c5p30551718ES	GTATCTATAGGCAAGGCTTTTCTG
chr5	30896804	30897119	30861047	30861362	+	20	315	6	L1PA2	"COLO2T,COLO2N"	36	378	"L1ME3A,AluSx1"				c5p30896961FS	TGTCTTCTGTCTCTTAATGCTTTG	c5p30896961ES	TCATTCTCAGTAAACTATCGCAAG
chr5	31365262	31365433	31329505	31329676	+	361	171	6	noL1	"COLO2T,COLO2N"	717	173	"AT_rich,(A)n"				c5p31365347FS	CACCTTCTAGTGTGTACTGTGGTG	c5p31365347ES	CTTTTGCAAATCAATTTTTGTAAC
chr5	32229916	32230102	32194159	32194345	-	66	186	4	L1PA2	"COLO2T,COLO2N"	40	67	L1PA2				c5p32230009FS	TTAATCTATTTCCTCACTTACCGC	c5p32230009ES	GATAGTTAATTATGTCGCATGATCC
chr5	32857650	32858448	32821893	32822691	-	4907502	798	130	L1HS	"COLO2T,COLO2N"	2803796	419	"L1HS,MER92B,(T)n,LTR81A"				c5p32858049FS	TTCTTAGGTGTAGCCTGAAGAAAC	c5p32858049ES	TAATGCTAGATGACACGTTAGTGG
chr5	33131407	33131829	33095650	33096072	-	236	422	14	L1PA4	"COLO2T,COLO2N"	176	407	"L1PA4,L1PA15-16"				c5p33131618FS	TATGTCTGGTAGAATTCGACTGTG	c5p33131618ES	AAAATGAAGAGTTCATGTCCTTTG
chr5	33668753	33668972	33632996	33633215	-	245	219	6	L1PA17	"COLO2T,COLO2N"	73	730		"LINE:dbRIP,Ewing,Iskow,Stewart"	ADAMTS12		c5p33668862FS	CAAAATGAGTTGAAGAGATCATTG	c5p33668862ES	TTTCTTGTAGGCAGTGTACTTCAG
chr5	33954636	33954767	33918879	33919010	-	14	131	4	noL1	"COLO2T,COLO2N"	29	132	L1PB1				c5p33954701FS	TCTGATGACTATGTGTCTAGGTGG	c5p33954701ES	ATTAGCAGAGAGAGAGACCTGAAG
chr5	33988161	33988600	33952404	33952843	-	341	439	21	L1HS	"COLO2T,COLO2N"	813	628	L1HS		SLC45A2		c5p33988380FS	TGTTTTCTCCCTCTCTAATATTCC	c5p33988380ES	TCATTCTCAGTAAACTATCGCAAG
chr5	34189673	34190019	34153916	34154262	+	5285	346	13	noL1	"COLO2T,COLO2N"	6305	343	L1HS	LINE:dbRIP			c5p34189846FS	GATGTAGACAGAGTTTGCATTTTG	c5p34189846ES	GATGAGTTCATATCCTTTGTAGGG
chr5	34407060	34407207	34371303	34371450	+	29	147	4	L1PA2	"COLO2T,COLO2N"	28	149	L1PA2				c5p34407133FS	GAGGTAAATACAATTTATGCCCAG	c5p34407133ES	GAATGCAAAGTTTAATGATCCATAC
chr5	36078244	36078364	36042487	36042607	+	46	120	4	noL1	"COLO2T,COLO2N"	33	91	L1MA3		"UGT3A2,UNQ842"		c5p36078304FS	GGGGTCTATCTCTCTCTTTACCTC	c5p36078304ES	ACACAGAGAAGAAATTCAGAATCC
chr5	36235026	36235315	36199269	36199558	+	10	289	3	L1PA4	COLO2T	0	0	L1PA4		C5orf33		c5p36235170FS	TCCTCTACAGTTGTAAAAAGAGGG	c5p36235170ES	AACTATTTTAGAGGCAAACTGTCC
chr5	37496504	37496646	37460747	37460889	+	280	142	21	L1HS	"COLO2T,COLO2N"	88	91	"(TAAAAA)n,L1HS"		"DKFZp547K202,WDR70"		c5p37496575FS	CCAGATAAATATTTGAAGCTTTCC	c5p37496575ES	TCATTCTCAGTAAACTATCGCAAG
chr5	39082008	39082363	39046251	39046606	+	65	355	4	noL1	"COLO2T,COLO2N"	136	243	AluJr		"RICTOR,KIAA1999"		c5p39082185FS	ATGTTAAAGGATATGGAACAGGAG	c5p39082185ES	AGATTTGAGTATGGATTAGCAACC
chr5	39829520	39829769	39793763	39794012	+	370	249	7	L1PA2	"COLO2T,COLO2N"	135	209	"L1PA2,(A)n"				c5p39829644FS	CATAGCAGACATGCTCTACAAAAC	c5p39829644ES	TAGACTGGATTAAGAAAATGTGGC
chr5	41270748	41270984	41234991	41235227	-	74	236	8	L1PA2	"COLO2T,COLO2N"	168	236	L1PA2		C6		c5p41270866FS	TGAATTAGCACTGAGTGTAGAAGC	c5p41270866ES	TCATTCTCAGTAAACTATCGCAAG
chr5	41438918	41439321	41403161	41403564	-	44169	403	46	L1HS	"COLO2T,COLO2N"	85981	404	"L1HS,L1ME1,L1MC4"		PLCXD3		c5p41439119FS	TCATTAGTAGTAGCCCTTGTCCTG	c5p41439119ES	GATGAGTTCATATCCTTTGTAGGG
chr5	41635821	41636270	41600064	41600513	+	6862	449	17	L1HS	"COLO2T,COLO2N"	18786	448	"HAL1,L1HS"	LINE:dbRIP			c5p41636045FS	CTGTGCATCTTTATCTCTCTGATG	c5p41636045ES	TCATTCTCAGTAAACTATCGCAAG
chr5	41637850	41638104	41602093	41602347	+	20167	254	30	noL1	"COLO2T,COLO2N"	20773	330	"MER2,(CATA)n,AluY"	"LINE:Ewing,Iskow"			c5p41637977FS	TTACTGATTCTGAAAAATCCTTTAAC	c5p41637977ES	TTACATACACAGTTCATCCTCACC
chr5	43501835	43502066	43466078	43466309	+	1171	231	11	L1PA4	"COLO2T,COLO2N"	1001	301	L1MA1		C5orf28		c5p43501950FS	CTTTCCTTTCTGACTGAAGTTCTC	c5p43501950ES	GATGAGTTCATATCCTTTGTAGGG
chr5	44190269	44190804	44154512	44155047	+	11817	535	23	L1HS	"COLO2T,COLO2N"	11518	492	"L1HS,MER61-int"				c5p44190536FS	TTTATTACCCAACTTTAGTCCCAC	c5p44190536ES	TGGGAGATATACCTAATGCTAGATG
chr5	44558989	44559345	44523232	44523588	-	15	356	2	L1PA3	"COLO2T,COLO2N"	28	65	"L1MCc,L1PA3"				c5p44559167FS	TTTATACTGACTTATCAAGCTCGC	c5p44559167ES	AACTAGAAATACCATTTGACCCAG
chr5	44610263	44610368	44574506	44574611	-	21	105	5	noL1	"COLO2T,COLO2N"	17	105	(T)n				c5p44610315FS	ATTGATTGAGGTTTTAACTTTTGG	c5p44610315ES	GAAAGTGATTGTGTGAGACTTCAG
chr5	44620871	44621180	44585114	44585423	+	149	309	9	L1PA3	"COLO2T,COLO2N"	343	309					c5p44621025FS	ATTTGTTATTATTTTGGCAAGGAG	c5p44621025ES	TCATTCTCAGTAAACTATCGCAAG
chr5	44699249	44699438	44663492	44663681	+	15	189	3	L1PA3	"COLO2T,COLO2N"	20	145	"L1PA3,L2b"				c5p44699343FS	GAGTACTGTCCTGGTTGACTGTAG	c5p44699343ES	CAATCTATCATTGTTGGACATTTG
chr5	45388395	45388594	45352638	45352837	+	15	199	4	L1PA3	"COLO2T,COLO2N"	7	705			HCN1		c5p45388494FS	TCTTCATGGAGAATCTTCTAGTCC	c5p45388494ES	TACTATGCAGCCATAAAAATGATG
chr5	45700279	45700499	45664522	45664742	+	25	220	4	L1PA2	"COLO2T,COLO2N"	12	220	"L1PA3,L1PA2"		HCN1		c5p45700389FS	GTGAATAGTGCCACAATAGCATAC	c5p45700389ES	TCATTCTCAGTAAACTATCGCAAG
chr5	45868538	45868737	45832781	45832980	-	10	199	3	L1PA3	"COLO2T,COLO2N"	2	485	"L1PA3,(TTTTTA)n"				c5p45868637FS	AATTATGTCTCTCCTTGATTGAGC	c5p45868637ES	AATACTATGCAGCCATACAAAATG
chr5	46013006	46013391	45977249	45977634	-	27591	385	38	L1HS	"COLO2T,COLO2N"	23750	388	"L1HS,ALR/Alpha"				c5p46013198FS	AATCTGCAAAGAGATATTCAGGAG	c5p46013198ES	TCATTCTCAGTAAACTATCGCAAG
chr5	46083235	46083421	46047478	46047664	+	480	186	5	L1PA4	"COLO2T,COLO2N"	232	110	"(TAA)n,ALR/Alpha"				c5p46083328FS	CTGTATCAGACGAATACAAGCATC	c5p46083328ES	TCATTCTCAGCAAACTATCAGAAG
chr5	46235016	46235317	46199259	46199560	+	15	301	3	L1PA3	"COLO2T,COLO2N"	26	593	"L1PA3,ALR/Alpha"				c5p46235166FS	AGAATCTGTGAAGGGATATTTTTG	c5p46235166ES	ATGATGCTATAAAGACACATGCAC
chr5	46259878	46260089	46224121	46224332	-	119	211	6	L1PA2	"COLO2T,COLO2N"	178	208	"(TTTA)n,ALR/Alpha"				c5p46259983FS	CTGTTTTTGTCCATTCTGTAACTG	c5p46259983ES	TAAAAACCCTTTTTCACTCATAGG
chr5	46405290	46405393	46369533	46369636	-	706	103	4	noL1	"COLO2T,COLO2N"	139	103	ALR/Alpha				c5p46405341FS	GCGTATGGTAGAAAAGGAAGTATC	c5p46405341ES	AAAAAGAGTGTTTCAAAATTGCTC
chr5	49475815	49476025	49440058	49440268	-	176	210	4	noL1	"COLO2T,COLO2N"	437	193	ALR/Alpha				c5p49475920FS	ATAAAAGAAAGATTCAACTCCGTG	c5p49475920ES	AGTGGATATTTGGAGAGATTTGAG
chr5	49555657	49556154	49519900	49520397	+	63	497	4	L1PA3	"COLO2T,COLO2N"	1	65	"L1PA3,ALR/Alpha"				c5p49555905FS	TCCATATAAAAACTAGGCAGAAGC	c5p49555905ES	TAGACTGGATTAAGAAAATGTGGC
chr5	49600388	49600531	49564631	49564774	+	138	143	10	L1PA2	"COLO2T,COLO2N"	981	139	L1MCb				c5p49600459FS	GCATGATTTCTGATAAGTTCATTG	c5p49600459ES	ATGATGAGTTCATGTCCTTTGTAG
chr5	49784369	49784472	49748612	49748715	-	16	103	3	L1PA3	"COLO2T,COLO2N"	31	551	L1PA14				c5p49784420FS	TAGACAGAAAAGTTCTCCAAATCC	c5p49784420ES	ACACTGCATATTCTCACTCATAGG
chr5	50588195	50588379	50552438	50552622	+	1095	184	3	L1PA2	"COLO2T,COLO2N"	2061	184	L1PA2				c5p50588287FS	AAAAGAAAAATCCTTGGGATTAAC	c5p50588287ES	AACTAGAAATACCATTTGACCCAG
chr5	51523725	51524115	51487968	51488358	-	380949	390	34	L1HS	"COLO2T,COLO2N"	309610	343	L1HS				c5p51523920FS	TCACATATTTGTGTGTGTGTGTG	c5p51523920ES	GATGAGTTCATATCCTTTGTAGGG
chr5	52222840	52223170	52187083	52187413	+	22	330	3	noL1	"COLO2T,COLO2N"	33	72	"(A)n,L1ME2"		ITGA1		c5p52223005FS	AATCCCCAATATGTAGATATGACC	c5p52223005ES	CGTAGTGATATTTGTCCTTCAGTG
chr5	53012461	53012777	52976704	52977020	+	12	316	2	L1PA3	"COLO2T,COLO2N"	2	234	"MIR,L2"		NDUFS4		c5p53012619FS	ACTAAAGGGCATAAGAAAACTTTG	c5p53012619ES	TCATTCTCAGTAAACTATCGCAAG
chr5	54453846	54454530	54418089	54418773	-	18	684	2	noL1	"COLO2T,COLO2N"	10	684	"AluJb,MLT1F1"		CDC20B		c5p54454188FS	TAAGACACAGTCTCACTCTGTTGC	c5p54454188ES	GAGAATTCCTCATTGTCTTTCTTG
chr5	55534610	55534969	55498853	55499212	-	1254	359	11	L1PA4	"COLO2T,COLO2N"	1588	292	"THE1C,L1PA4"		ANKRD55		c5p55534789FS	TTTCTTTGAATGTTAGCATCTCTG	c5p55534789ES	ATGATGAGTTCATGTCCTTTGTAG
chr5	55807212	55807516	55771455	55771759	+	188	304	8	L1PA4	"COLO2T,COLO2N"	143	155	"MER34,L1PA4"				c5p55807364FS	TGATATTGAAGGAAGATCAAAAGG	c5p55807364ES	TCATTCTCAGCAAACTATAGCAAG
chr5	56063539	56064200	56027782	56028443	+	17	661	3	L1PA6	"COLO2T,COLO2N"	5	663	"MER5A1,MER5B,L1PA6"				c5p56063869FS	CTGAAAAGGTTTTTATTTAGAGCG	c5p56063869ES	TAATGTAAATGATGAGTTGATGGG
chr5	57721905	57722132	57686148	57686375	+	53	227	7	L1HS	"COLO2T,COLO2N"	101	205	MLT1J	LINE:dbRIP			c5p57722018FS	CCTCTATAACCATTTTTGTGATCC	c5p57722018ES	ACACCGCATATTCTCACTCATAG
chr5	59823668	59824133	59787911	59788376	+	838	465	15	L1PA2	"COLO2T,COLO2N"	1109	465	"AluJr,L1PA2,L1PA6"		PART1		c5p59823900FS	AGGTATTTCTCCTAATGCTATCCC	c5p59823900ES	TGACTGCTCATTAAAAGAAAATTG
chr5	60090931	60091264	60055174	60055507	-	248	333	13	L1PA3	"COLO2T,COLO2N"	181	239	L1PA3		ELOVL7		c5p60091097FS	AGTTAAGTATTCTCCCAAAGCCTC	c5p60091097ES	TTGATGAGTTCATGTCCTTTGTAG
chr5	60267736	60267865	60231979	60232108	-	25	129	2	noL1	"COLO2T,COLO2N"	17	65	L1PB1		ERCC8		c5p60267800FS	TTGTTTTTAATTCTGTTTGTGTGG	c5p60267800ES	ATTAAATGCATACCTCAGGAAGTC
chr5	60744374	60744502	60708617	60708745	-	18	128	4	L1PA3	"COLO2T,COLO2N"	44	128	"(TTCA)n,L2b"				c5p60744438FS	ATTTCCTTGCATATCAGGAATTAG	c5p60744438ES	TGGAAATCATCATTCTCAGTAAAC
chr5	62154910	62155420	62119154	62119664	+	22587	510	46	L1PA2	"COLO2T,COLO2N"	7566	500	"L1PA2,(A)n"				c5p62155165FS	GTGCACATAAGTAAACTATGCCTG	c5p62155165ES	TCATTCTCAGTAAACTATCGCAAG
chr5	62265885	62266226	62230129	62230470	+	101	341	3	noL1	COLO2T	0	0					c5p62266055FS	AAGTAAAAGAACCCAACTGAAAAG	c5p62266055ES	GGTACTGAAGCATACAAAACACAC
chr5	63460587	63460736	63424831	63424980	-	18	149	3	L1PA2	"COLO2T,COLO2N"	31	149	"L1PA2,L1ME1"				c5p63460661FS	TAAAACTAGATGTATCAGCGTTGC	c5p63460661ES	GCTTCTATAAAGACACATGCACAC
chr5	63638528	63638765	63602772	63603009	+	87	237	9	L1PA4	"COLO2T,COLO2N"	62	167	"AT_rich,MER117,L1PA4"		RNF180		c5p63638646FS	AGCTTTTTAAGTCTTCTCTGGATG	c5p63638646ES	GTGATGAGTTCATGTCCTTTGTAG
chr5	64707839	64708071	64672083	64672315	+	17	232	3	L1PA3	"COLO2T,COLO2N"	12	65	"L1PA3,AluSx"		ADAMTS6		c5p64707955FS	CAAGTGATCCTTCCACATCAG	c5p64707955ES	ATGATAGGCTGGATTAAGAAAATG
chr5	64830756	64831298	64795000	64795542	-	3396281	542	116	L1HS	"COLO2T,COLO2N"	4349129	542	"AluJr,L1MDa,L1HS"				c5p64831027FS	CAAGATTCCTTCTTTGATGATTTC	c5p64831027ES	TAATGCTAGATGACACGTTAGTGG
chr5	67053584	67053717	67017828	67017961	-	2186	133	16	L1PA3	"COLO2T,COLO2N"	2211	134	L1PA3				c5p67053650FS	ACTACTCTGGCTTTTCATCATTTC	c5p67053650ES	TTGATGAGTTCATGTCCTTTGTAG
chr5	67117714	67118170	67081958	67082414	+	66	456	5	L1PA3	"COLO2T,COLO2N"	30	457	"L1PA3,AT_rich,L1PA4"				c5p67117942FS	TGATGATAAAAATAACTGCCAATG	c5p67117942ES	TCATTCTCAGTAAACTATCGCAAG
chr5	68299028	68299150	68263272	68263394	-	54	122	5	noL1	"COLO2T,COLO2N"	10	117	AluSp				c5p68299089FS	CACACCTATAATCTCAGCACTTTG	c5p68299089ES	TTAATACAAGGCAATAACTAGCCC
chr5	71968675	71968860	71932919	71933104	+	70	185	6	L1PA4	"COLO2T,COLO2N"	43	183	"G-rich,L1PA4"				c5p71968767FS	AGACTGTAAACACTGAAGCCAAG	c5p71968767ES	CAAATGTCCAACAATGATAGACTG
chr5	72734146	72734251	72698390	72698495	-	13	105	3	L1PA3	"COLO2T,COLO2N"	2	65					c5p72734198FS	CATCAAAGTCATGAAAACAAAGAC	c5p72734198ES	GATGAGTTTATGTCCTTTGTAGGG
chr5	74211968	74212545	74176212	74176789	-	116	577	2	noL1	"COLO2T,COLO2N"	53	1077	L1M4		FAM169A		c5p74212256FS	TTTGTATTTTTAGTAGAGACGGGG	c5p74212256ES	TTTTTATGATAGAAGGGTCAATCC
chr5	74739007	74739503	74703251	74703747	-	28	496	3	L1PA17	"COLO2T,COLO2N"	29	490	"L1MB2,PABL_A,AT_rich,L1PA15,A-rich"		COL4A3BP		c5p74739255FS	TGTTTATTCAACAAATGCTAGTGG	c5p74739255ES	AGACCCCTAATACACTTGTTTGTG
chr5	74979803	74980172	74944047	74944416	+	59	369	7	L1PA2	"COLO2T,COLO2N"	55	532	L1PA2		AK307154		c5p74979987FS	GAAGTGTGTCCAAGATCAAACAC	c5p74979987ES	ATGATGAGTTCATGTCCTTTGTAG
chr5	75151257	75151362	75115501	75115606	+	18	105	5	L1PA7	"COLO2T,COLO2N"	48	110	"SVA_D,L1PA7"				c5p75151309FS	AACTTGTTATTGGTCTATTCAGGG	c5p75151309ES	AGAAGTAGACATGGGAGACTTTTC
chr5	76812366	76812726	76776610	76776970	+	13	360	3	L1PA3	"COLO2T,COLO2N"	7	198	"L1PA3,AluSg,LTR79"		WDR41		c5p76812546FS	TTACCTCAAAAATAAGAGCAGACC	c5p76812546ES	TGCTCAGTAAACTATTGCAAGAAC
chr5	76946341	76946611	76910585	76910855	+	7062	270	30	L1PA3	"COLO2T,COLO2N"	6782	301	"L1MB8,L1PA3"				c5p76946476FS	CATTTGCACCCAATAAAATAAATG	c5p76946476ES	TCATTCTCAGTAAACTATCGCAAG
chr5	78835067	78835406	78799311	78799650	+	416	339	5	noL1	"COLO2T,COLO2N"	35	69	"AluSq10,Tigger2a,AluSz"		HOMER1		c5p78835236FS	GTTGTGTATTTCATTGTTGCTTTC	c5p78835236ES	AACATGTTATTAAGAAAAGCAGGC
chr5	79054989	79055384	79019233	79019628	+	4638	395	5	noL1	"COLO2T,COLO2N"	1380	395	"AluSg4,AluJr,L1MEg"		CMYA5		c5p79055186FS	ATCTTGAACTCCTGAACTGAACTC	c5p79055186ES	CTTGCTACAAAAACCTGACAAAC
chr5	79110002	79110542	79074246	79074786	-	72462	540	40	L1HS	"COLO2T,COLO2N"	70057	408	"L1HS,(TG)n,(TTTTTA)n,L1MC4a"	LINE:dbRIP	CMYA5		c5p79110272FS	ACAAACAATGCTGCAGTAATAAAC	c5p79110272ES	TAATGCTAGATGACACGTTAGTGG
chr5	80274806	80274966	80239050	80239210	-	43	160	3	noL1	"COLO2T,COLO2N"	29	160	"SVA_D,T-rich"				c5p80274886FS	TATGCTATAGAAGGGAGAGGAAAG	c5p80274886ES	TCTGTGTAGAAAGAGGTAGACGTG
chr5	80953649	80953964	80917893	80918208	+	202	315	11	L1HS	"COLO2T,COLO2N"	1204	253	L1HS		"SSBP2,DKFZp564C0362"		c5p80953806FS	ACCAAGTTTTGTTGTATCCTCATC	c5p80953806ES	ATGATGAGTTCATGTCCTTTGTAG
chr5	81700136	81700868	81664380	81665112	-	40057	732	48	L1HS	"COLO2T,COLO2N"	57954	565	"L1HS,(T)n,AluSc"				c5p81700502FS	AGAGTCTCACTCTGTCACCAGG	c5p81700502ES	TAATGCTAGATGACACGTTAGTGG
chr5	82651902	82652273	82616146	82616517	+	48	371	7	L1PA2	"COLO2T,COLO2N"	30	197	"Tigger1,L1PA2,AT_rich"		XRCC4		c5p82652087FS	GTGAAACCCCATCTCTACTAAAAC	c5p82652087ES	TCATTCTCAGTAAACTATCGCAAG
chr5	84275205	84275332	84239449	84239576	-	2429	127	9	noL1	"COLO2T,COLO2N"	787	221	"L1MA3,L1ME1"	"LINE:dbRIP,Ewing,Iskow"			c5p84275268FS	TTTTTGGCAAATATTCCCTTC	c5p84275268ES	CAATTATACCTCAATAAAGCTGGG
chr5	84689943	84690333	84654187	84654577	-	1652649	390	47	L1HS	"COLO2T,COLO2N"	2295667	390	"L1HS,L2"				c5p84690138FS	AGCAAGAAACTGAAAATAGCTTTG	c5p84690138ES	GATGAGTTCATATCCTTTGTAGGG
chr5	85296263	85296736	85260507	85260980	+	29	473	4	noL1	"COLO2T,COLO2N"	1	65	"AluSx1,A-rich"				c5p85296499FS	GCTTTTTATTGTTATCACAAATGG	c5p85296499ES	TGCGTTTGTAACTTAAGACACTTC
chr5	85768229	85768339	85732473	85732583	+	58	110	2	L1PA3	"COLO2T,COLO2N"	8	65	L1PA3				c5p85768284FS	TTTTATAACTAAACGTTTGTGCCC	c5p85768284ES	CAAATGTCCAACAATGATAGACTG
chr5	85848231	85848749	85812475	85812993	+	7149	518	26	L1HS	"COLO2T,COLO2N"	2114	499	"L1HS,AT_rich,L1P4,AluY"				c5p85848490FS	TGAAACGCTGTCTCTACTAAAAATAC	c5p85848490ES	TCATTCTCAGTAAACTATCGCAAG
chr5	86083510	86083829	86047754	86048073	-	87	319	5	L1PA3	"COLO2T,COLO2N"	55	197	"AT_rich,AluSx"				c5p86083669FS	ATTAAGAACAGATTGGAAGCAAAC	c5p86083669ES	TCATTCTCAGTAAACTATCGCAAG
chr5	86220305	86220942	86184549	86185186	+	368	637	14	L1PA4	"COLO2T,COLO2N"	383	637	"MLT1N2,LTR67B,(TG)n,L1PA4,MLT2D"				c5p86220623FS	GAAGGCTTCAGTAGAAAGACTGAC	c5p86220623ES	AATGCTAAATGACAAGTTAATGGG
chr5	87102924	87103399	87067168	87067643	-	538	475	5	noL1	"COLO2T,COLO2N"	1704	68	"AT_rich,MIRc"				c5p87103161FS	ACGCAGATTTACCAGCTTACTTAG	c5p87103161ES	CTTGTCACTAGAAAGATGTGGATG
chr5	89486521	89486863	89450765	89451107	+	19689	342	30	noL1	"COLO2T,COLO2N"	20363	278		"LINE:dbRIP,Ewing,Iskow,Stewart"			c5p89486692FS	ATCATTTCTATGGAAAAATGAAGG	c5p89486692ES	GTACCTACTATGTTCCAGACCCTG
chr5	89545913	89546108	89510157	89510352	+	20	195	3	L1PA2	"COLO2T,COLO2N"	58	226	"L1MB3,L1PA2"				c5p89546010FS	GAAATTCTAGTTGTTGATTGAGGG	c5p89546010ES	GTGATCAGTTCATGTCCTTTGTAG
chr5	91614400	91614515	91578644	91578759	+	18	115	2	noL1	"COLO2T,COLO2N"	21	115	L1PA5		AK056485		c5p91614457FS	GGTGAATTTCTTTGTCATTATCATC	c5p91614457ES	CATTAACAAGTCAGGAAACAACAG
chr5	91628378	91628533	91592622	91592777	-	94	155	7	L1PA2	"COLO2T,COLO2N"	198	155			AK056485		c5p91628455FS	TATTCCCAGACTATTCTTGCTCTC	c5p91628455ES	CATATACACCATGGAATACTGTGC
chr5	93154274	93154576	93128518	93128820	+	107	302	9	L1PA3	"COLO2T,COLO2N"	64	307	"L1PA3,AluJr4,MIRc"		FAM172A		c5p93154425FS	GATCTGGAGTTAAAAGATGTAGGC	c5p93154425ES	CTCATATTTTAGGAAAGAAGGCAG
chr5	95190470	95190764	95164714	95165008	-	32	294	3	L1PA3	"COLO2T,COLO2N"	49	66	"L1PA3,MLT1L"				c5p95190617FS	ACTGAACTCAGTAACACTGACAGC	c5p95190617ES	CCAACAAGGATAGACTGGATTAAG
chr5	96579724	96579866	96553968	96554110	-	108	142	3	L1PA4	"COLO2T,COLO2N"	79	551	L1MEc				c5p96579795FS	GTTGTTGCACAGCTTACTGATAAC	c5p96579795ES	ACATGGATAAAGCTAGAAACCATC
chr5	96884837	96885003	96859081	96859247	-	47	166	4	L1PA3	"COLO2T,COLO2N"	19	159	"L1MA3,(TTTTTA)n,AT_rich"				c5p96884920FS	TAATAATCACATCAGGGTAAATGG	c5p96884920ES	TAGACTGGATTAAGAAAATGTGGC
chr5	96994922	96995176	96969166	96969420	+	23	254	2	L1PA2	COLO2T	0	0	L1PA2				c5p96995049FS	TCAAAGGTAGGGATTACAAAAGAG	c5p96995049ES	CAAATGTCCAACAATGATAGACTG
chr5	97040492	97040687	97014736	97014931	-	10	195	2	L1PA4	"COLO2T,COLO2N"	8	195	MER57B1				c5p97040589FS	TTAATCATTTTTATTAAGGGGTGC	c5p97040589ES	TCATTCTCAGCAAACTATTTCAAG
chr5	97108254	97108980	97082498	97083224	-	16	726	3	noL1	"COLO2T,COLO2N"	31	727	"L1ME3C,AluY"				c5p97108617FS	TCCCAATGCAAATACACTCTC	c5p97108617ES	TTCCTCTACATCAAAAATAACCAG
chr5	97468482	97468762	97442726	97443006	+	119	280	7	noL1	"COLO2T,COLO2N"	287	291	"AT_rich,(A)n"				c5p97468622FS	TAATGTTCTCTATATCCCCACCTC	c5p97468622ES	GACATCATTGAGATTTAGCAGTTG
chr5	97641657	97641772	97613747	97613862	-	47	115	4	L1PA2	"COLO2T,COLO2N"	63	151	"L1PA2,MLT1C"				c5p97641714FS	TCCAACCTCTGTACTAACTTCCTC	c5p97641714ES	AAAGAAAGAAAAGAACAAGGAACC
chr5	98351908	98352080	98324008	98324180	+	15049	172	42	L1PA3	"COLO2T,COLO2N"	13004	206	"GA-rich,L1PA3"				c5p98351994FS	CCCTGTCTTAAAAGAGAGAGAGAG	c5p98351994ES	TAGACTGGATTAAGAAAATGTGGC
chr5	99056617	99056745	99028718	99028846	+	62	128	10	L1PA2	"COLO2T,COLO2N"	122	305	"L1PA2,(A)n"				c5p99056681FS	AAACTGATTCCAAATTCAATAACC	c5p99056681ES	CAAATGTCCAACAATGATAGACTG
chr5	99225508	99226042	99197609	99198143	+	5463	534	9	L1PA2	"COLO2T,COLO2N"	473	533	L1PA2				c5p99225775FS	TGCTCTTACAGAACAATAGAAAGC	c5p99225775ES	AATGCTAGATGACAAGTTAGTGGG
chr5	99780570	99780831	99752671	99752932	-	10	261	2	noL1	"COLO2T,COLO2N"	10	65	AluYb8				c5p99780700FS	CCACAGATGTAAAATGTTTATTGC	c5p99780700ES	TCAGATTTAAGTGCAGTCTCAAAG
chr5	100009465	100010221	99981566	99982322	+	1268599	756	109	L1HS	"COLO2T,COLO2N"	568674	756	"LTR71A,L1HS,Arthur1,LTR16A"				c5p100009843FS	AAGACTGTAACCCCATATTACTCG	c5p100009843ES	CTCTCTTTAAGAACAAAGACAGGG
chr5	100271753	100271917	100243854	100244018	-	23	164	3	L1PA4	"COLO2T,COLO2N"	46	168	"L1MC1,L1PA4"				c5p100271835FS	TTATTGATGATTCCTTTGATGTTG	c5p100271835ES	GTGATACATAGATTCAGTGCAAGC
chr5	101500937	101501697	101473038	101473798	+	15091	760	53	L1HS	"COLO2T,COLO2N"	16768	757	"L1HS,(A)n,L1PA4,LTR78B"				c5p101501317FS	TAGATTTTGAGCAATAGGTTAGGC	c5p101501317ES	CTAATGATAGATGACACGTTGGTG
chr5	101558347	101558512	101530448	101530613	+	91211	165	33	L1HS	"COLO2T,COLO2N"	75733	165	"L1HS,(A)n,L1PA6"				c5p101558429FS	GAGAACTTCCCTAACCTAGAAAGG	c5p101558429ES	AAATCAATTCAAGGTGGATTAAAG
chr5	102004489	102004657	101976590	101976758	+	10	168	8	L1PA2	"COLO2T,COLO2N"	27	769	"L1PA2,(A)n"				c5p102004573FS	CACTGTATTCAATGTAAAGTCCCC	c5p102004573ES	CATACAGGTCAACGTAACACTTTC
chr5	104876487	104876884	104848588	104848985	-	1188	397	9	L1HS	"COLO2T,COLO2N"	730	202	"L1HS,L2b,X7B_LINE"				c5p104876685FS	AGAAAACATTATAAAATTGCCTGC	c5p104876685ES	TCATTCTCAGTAAACTATCGCAAG
chr5	105511344	105511596	105483445	105483697	-	170	252	4	L1HS	"COLO2T,COLO2N"	424	69	"Charlie1a,L1HS"				c5p105511470FS	AACACCACATGTTCTCACTCATAG	c5p105511470ES	AACACAAATGTCCAACAATGATAG
chr5	105724883	105725126	105696984	105697227	-	11	243	3	L1PA16	"COLO2T,COLO2N"	15	243	"AluSx,AluY,Tigger4"				c5p105725004FS	ACAGGCTTTCCATCTCTACCTAC	c5p105725004ES	ATGTAACAAATCTGCATGTGTACC
chr5	105788636	105789007	105760737	105761108	-	82	371	5	L1PA2	"COLO2T,COLO2N"	140	374	"L1MA8,L1PA2"				c5p105788821FS	TCTTTGAACTGATTTTGCTGTATC	c5p105788821ES	ATGAAATTGGAAAACATCATTCTC
chr5	105963339	105963576	105935440	105935677	+	1780	237	5	noL1	"COLO2T,COLO2N"	2112	247	(CATATA)n	"LINE:Ewing,Iskow,Stewart"			c5p105963457FS	ATTGTGTTATGTTACCTGCCTTTC	c5p105963457ES	AGAGCATTTCTCTTTCTTCAAGTG
chr5	106134399	106134525	106106500	106106626	-	11	126	2	L1PA4	"COLO2T,COLO2N"	1	65					c5p106134462FS	TTTTATCCTGCCTAATTTATGACC	c5p106134462ES	AAATCATCATTCTCAGCAAACTATC
chr5	106294174	106294422	106266275	106266523	+	11	248	2	L1PA3	"COLO2T,COLO2N"	2	65	"L1PA3,L1M5"				c5p106294298FS	GGTCCATTTGTTAAATATTTTTGG	c5p106294298ES	TGTATGCATCAAAAAGAACAAAAG
chr5	107336941	107337459	107309042	107309560	+	29	518	4	noL1	"COLO2T,COLO2N"	67	522	"MER30,Plat_L3"		FBXL17		c5p107337200FS	TTAGTATCACATTAATTCAGCCCC	c5p107337200ES	TCCATTTTAATTTTCTGTAGTCCTG
chr5	108628963	108629565	108601064	108601666	+	14199	602	23	L1HS	"COLO2T,COLO2N"	8470	602	L1HS	LINE:dbRIP			c5p108629264FS	ACAATTCATGTCAGTGGTAACAAG	c5p108629264ES	ACACCGCATATTCTCACTCATAG
chr5	108807166	108807286	108779267	108779387	-	19	120	3	noL1	"COLO2T,COLO2N"	41	83	L1PA3				c5p108807226FS	TTGAATCTATAAATTACCTTGGGC	c5p108807226ES	ATAAAATACTGGCAAACTGAATCC
chr5	109029690	109029982	109001791	109002083	+	2117	292	7	noL1	"COLO2T,COLO2N"	304	278					c5p109029836FS	AAGGACTATTTATGAAATTGAGGC	c5p109029836ES	AAAATACATTTGTGTGTGTCTGTG
chr5	109461159	109461346	109433260	109433447	-	11	187	2	noL1	"COLO2T,COLO2N"	24	89	L1MCc				c5p109461252FS	CAGGTAAACAGACAAAATGTGAAC	c5p109461252ES	CCCAGACTCTAGCTGGAACTATAC
chr5	109507765	109508145	109479866	109480246	-	116	380	6	noL1	"COLO2T,COLO2N"	164	380	"L1MEe,L1PA5"	"LINE:dbRIP,Ewing"			c5p109507955FS	GAACTAGTTTACAGTCCCACCAAC	c5p109507955ES	GCAGTTTTACTGTGATACGTCTTG
chr5	109604691	109604850	109576792	109576951	-	67	159	3	L1PA3	"COLO2T,COLO2N"	27	158	"L1ME4a,L1PA3"				c5p109604770FS	TTTCTTTAGACTTGTTTCCAGAGG	c5p109604770ES	TGATCATTCTCAGTAAACTATCGC
chr5	110502642	110503112	110474743	110475213	+	16592	470	27	L1HS	"COLO2T,COLO2N"	16385	518	"L1HS,AT_rich,L1PB2"				c5p110502877FS	ACCAATTCTTCTTTAAATGTCTGG	c5p110502877ES	GACATATTGGATGAAAATGGAAAC
chr5	110671848	110672242	110643949	110644343	+	2235	394	15	L1HS	"COLO2T,COLO2N"	1424	377	L1HS		CAMK4		c5p110672045FS	AGATTACAGAAGGCACTTTTAACG	c5p110672045ES	TCATTCTCAGTAAACTATCGCAAG
chr5	111897472	111897572	111869573	111869673	+	13	100	4	noL1	"COLO2T,COLO2N"	43	100	"AT_rich,LTR78"				c5p111897522FS	AACTATTACAGTTGGCTATGGTGC	c5p111897522ES	ACATAACAGAAATGTGAACCACAC
chr5	112113505	112113613	112085606	112085714	-	30	108	4	noL1	"COLO2T,COLO2N"	36	109	AluSz		APC		c5p112113559FS	TTTTTGTATTTTTAGTAGAGGCGG	c5p112113559ES	AAAAAGAATGCTCATCACTAATGC
chr5	112711159	112711280	112683260	112683381	+	46	121	4	L1PA5	"COLO2T,COLO2N"	53	80	L1MA2		MCC		c5p112711219FS	TTGTTATATCCTCTTGCTGAATTG	c5p112711219ES	CACTTTCAATAGTAAGCACACAGG
chr5	113520287	113520449	113492388	113492550	-	302	162	3	L1PA4	"COLO2T,COLO2N"	344	237	L1PA13				c5p113520368FS	CTAGCTTTGTTCTTTTTACTTGGC	c5p113520368ES	TGAACAATGAGAACATAAGGACAC
chr5	114784410	114784927	114756511	114757028	-	11	517	4	L1HS	"COLO2T,COLO2N"	7	539	"L1HS,AT_rich,(T)n,L1MC5"				c5p114784668FS	GAATCAAGGATCCAAATGATATTC	c5p114784668ES	ACACCACATATTCTCACTCATAGG
chr5	117294252	117294404	117266353	117266505	-	99	152	5	L1PA2	"COLO2T,COLO2N"	168	286	"L1PA2,AluSx"				c5p117294328FS	AATAAAAACTGATATCATGCAGGG	c5p117294328ES	AGGATGAGTTCATGTCCTTTGTAG
chr5	118808828	118809039	118780929	118781140	+	33	211	3	L1PA6	"COLO2T,COLO2N"	45	273	L1MEd				c5p118808933FS	CTTAGCTTCCGAGATCAGATGAG	c5p118808933ES	AAACTATCACAAGGACAGAAAACC
chr5	118969014	118969670	118941115	118941771	+	12945	656	21	L1HS	"COLO2T,COLO2N"	11665	656	"L1HS,L1PA4"				c5p118969342FS	CAGATAGGGAGGACAGTATGGTAG	c5p118969342ES	TGGGAGATATACCTAATGCTAGATG
chr5	119048055	119048440	119020156	119020541	-	10954	385	39	L1HS	"COLO2T,COLO2N"	4571	496	"THE1C,L1HS,AT_rich,THE1C-int"				c5p119048247FS	CAGGTGAATTTGTCTTAAAGATCC	c5p119048247ES	TCATTCTCAGTAAACTATCGCAAG
chr5	120018961	120019378	119991062	119991479	-	11	417	3	noL1	"COLO2T,COLO2N"	65	417	AT_rich		PRR16		c5p120019169FS	ATATTTCTGATTTCCAGTCTCCAC	c5p120019169ES	GTGATAGTGATTCAAGGGATCTTC
chr5	120234892	120235543	120206993	120207644	+	36	651	8	noL1	"COLO2T,COLO2N"	46	75	"(CA)n,AluSq2,AluSx1"				c5p120235217FS	ACTTTTAAATGACCAGATCTCCTG	c5p120235217ES	AAACCCTGTCTCTACTAAAAATGC
chr5	120834735	120835323	120806836	120807424	-	43	588	5	L1PA3	"COLO2T,COLO2N"	79	349	"L1PA3,L1MEc"				c5p120835029FS	ATGTTTTTCTTTTGATATTCGAGC	c5p120835029ES	CATATGGTAAAACTCCAGAAGTCC
chr5	121031949	121032329	121004050	121004430	+	399	380	17	L1HS	"COLO2T,COLO2N"	418	372	"L1HS,(A)n,LTR26"				c5p121032139FS	ACTATGAAATGTTTTCCCTTTGAG	c5p121032139ES	TCATTCTCAGTAAACTATCGCAAG
chr5	121033688	121034031	121005789	121006132	-	1408	343	12	L1HS	"COLO2T,COLO2N"	714	338	"T-rich,L1HS"				c5p121033859FS	AATAACAATTTGATCATTAATTGGC	c5p121033859ES	CTTCGTTTTTCTAGCTTAGCAATG
chr5	121608468	121608715	121580569	121580816	+	5921	247	41	L1HS	"COLO2T,COLO2N"	2985	248	"L1MA9,L1HS,AT_rich,(A)n"				c5p121608591FS	AATTAATTTTACTTTGGCATTTGG	c5p121608591ES	TCATTCTCAGTAAACTATCGCAAG
chr5	121885655	121885791	121857756	121857892	-	10	136	3	noL1	"COLO2T,COLO2N"	14	138	"(TG)n,AluSx3"				c5p121885723FS	GGAAACTGCTTAGATCACTCTCTC	c5p121885723ES	TATCTTTTTACATTGGCATAATGG
chr5	123530256	123530614	123502357	123502715	-	822	358	10	noL1	"COLO2T,COLO2N"	384	333	L1MEf				c5p123530435FS	GGGGCTTATAGATAAGTCAAAATG	c5p123530435ES	AATAAATTCCTTCTTCCAGTGATG
chr5	124935101	124935320	124907202	124907421	+	5593	219	53	L1HS	"COLO2T,COLO2N"	2070	254	"L1HS,L1PA4"				c5p124935210FS	GAACTAGTTTACAGTCCCACCAAC	c5p124935210ES	TTAGACCTAAAACCATACAAACCC
chr5	125067922	125068571	125040023	125040672	+	24411	649	58	noL1	"COLO2T,COLO2N"	29408	355	L1M4c	"LINE:dbRIP,Ewing,Iskow"			c5p125068246FS	ATGCCTTACATTCTTCTTCATTTC	c5p125068246ES	CAATTTTAAACAAAAGATCACAGG
chr5	125660200	125660511	125632301	125632612	+	309	311	12	L1PA4	"COLO2T,COLO2N"	247	333	"L1MCc,L1PA4,MER58A"				c5p125660355FS	GGAGATCTCTCTTCATTAACTTGC	c5p125660355ES	AACACCACATGTTCTCACTCATAG
chr5	126509986	126510306	126482087	126482407	+	646	320	4	L1PA4	"COLO2T,COLO2N"	855	734	"L1PA5,L1PA4"				c5p126510146FS	TTATTTTACCTCAATAAAGCTGGG	c5p126510146ES	ATGATGAGTTCATGTCCTTTGTAG
chr5	126841261	126841588	126813362	126813689	+	14	327	8	L1PA2	"COLO2T,COLO2N"	7	69	L1PA2				c5p126841424FS	TAAGGAAAAACAAATAGCAAATCC	c5p126841424ES	AATAAACATACGTGTGCATGTGTC
chr5	128769257	128769429	128741358	128741530	+	17	172	2	L1PA4	"COLO2T,COLO2N"	4	65	L1ME3A				c5p128769343FS	TATTCCTGGTTTTCTATTCTCCAG	c5p128769343ES	TAAGGAATTTAGAGGTCGTGAAAG
chr5	128909976	128910104	128882077	128882205	+	58	128	5	L1PA2	"COLO2T,COLO2N"	94	326	"L1MEd,L1PA2"		ADAMTS19		c5p128910040FS	ATCTGAAATTATGGTTCCATCTTG	c5p128910040ES	CAAATGTCCAACAATGATAGACTG
chr5	129990697	129990872	129962798	129962973	+	15	175	3	L1PA2	"COLO2T,COLO2N"	10	76	"L1MA2,L1PA2,AT_rich"				c5p129990784FS	TAGAGACTAGGAAGAGTAGCTGGG	c5p129990784ES	ATGGTTGAACTAGTTTACAGTCCC
chr5	130101691	130101855	130073792	130073956	+	22	164	5	L1PA2	"COLO2T,COLO2N"	8	154	"(TAAA)n,L1PA2,L1M4b"				c5p130101773FS	GGATTTATGATTCTTGGTCGATAG	c5p130101773ES	ATGATGAGTTCATGTCCTTTGTAG
chr5	130269806	130269986	130241907	130242087	+	10	180	2	L1PA3	COLO2T	0	0	"L1MD,A-rich"				c5p130269896FS	CCACAACATCTACTCACTTCTTTG	c5p130269896ES	GAACTAGTTTACAGTCCCACCAAC
chr5	131251034	131251349	131223135	131223450	-	558	315	16	L1PA4	"COLO2T,COLO2N"	676	315	"L1PA4,L1PA6"		ACSL6		c5p131251191FS	TATCATTGATGGACATTTAGGTTG	c5p131251191ES	ATGATGAGTTCATGTCCTTTGTAG
chr5	132290119	132290369	132262220	132262470	-	59	250	7	noL1	"COLO2T,COLO2N"	71	251	AluJr		AFF4	AFF4.L	c5p132290244FS	AAAAGACTTGCAAAGGTACTTAGG	c5p132290244ES	TTCCTATTCTAGTGGGAGACAGAC
chr5	132473334	132473438	132445435	132445539	+	396	104	28	noL1	"COLO2T,COLO2N"	496	103	"SVA_F,(A)n"				c5p132473386FS	ATTTACACCCTCCTTTATCTTTCC	c5p132473386ES	GTGTCTGTGTAGAAAGAAGCAGAC
chr5	132952830	132953260	132924931	132925361	+	27319	430	52	L1HS	"COLO2T,COLO2N"	23529	431	L1HS	LINE:dbRIP	FSTL4		c5p132953045FS	GATCTCCCATATAGTAAGTGGTGG	c5p132953045ES	TCATTCTCAGTAAACTATCGCAAG
chr5	132961982	132962218	132934083	132934319	+	827	236	4	noL1	"COLO2T,COLO2N"	77	653	MER5A1	"LINE:dbRIP,Ewing,Iskow,Stewart"	FSTL4		c5p132962100FS	TAAATAAAAGGAACTCCCTCTTCC	c5p132962100ES	GCTAGTCTCATCAAGCTATTTTCC
chr5	133762590	133763335	133734691	133735436	+	13	745	3	noL1	"COLO2T,COLO2N"	9	65	"(CATATA)n,FAM"		CDKN2AIPNL		c5p133762962FS	GATATCTTGACCTTGTGATCTGC	c5p133762962ES	GTCAAGGCTGTAGTGTACTGTGAC
chr5	133920382	133921030	133892483	133893131	-	565702	648	120	L1HS	"COLO2T,COLO2N"	930291	1015	"(CA)n,L1HS,MIR,(T)n"		"PHF15,FLJ00195"		c5p133920706FS	ACACATCACACAACACATACACAC	c5p133920706ES	TGGGAGATATACCTAATGCTAGATG
chr5	134446386	134446496	134418487	134418597	-	104	110	4	L1PA3	"COLO2T,COLO2N"	86	188	"HAL1,L1PA3"		AK026965		c5p134446441FS	CAATAAATGCTTGTTGTTGTAAGC	c5p134446441ES	CAAATGTCCAACAATGATAGACTG
chr5	134965956	134966258	134938057	134938359	-	11	302	4	L1PA5	"COLO2T,COLO2N"	5	258	L1PA5				c5p134966107FS	CATGCTAGACATTTATCCAGAAAC	c5p134966107ES	TTTACTCAAAAACTACATGCAAGG
chr5	135774997	135775571	135747098	135747672	+	1383	574	39	L1HS	"COLO2T,COLO2N"	1821	426	"AluSz6,L1HS,AT_rich,L2c"	LINE:dbRIP			c5p135775284FS	CTAATCTTAATGGAAGAGGCAGTC	c5p135775284ES	ACACCGCATATTCTCACTCATAG
chr5	136914120	136914780	136886221	136886881	+	12	660	2	L1PA5	"COLO2T,COLO2N"	17	88	"L1PA5,L1PA7"				c5p136914450FS	AATGTTTTCCCATTTGTTTATGTC	c5p136914450ES	GAATCCTCCCTAACTCATTTTATG
chr5	137042441	137042655	137014542	137014756	-	89	214	4	noL1	"COLO2T,COLO2N"	131	250		"LINE:dbRIP,Ewing,Stewart"	"KIAA1129,KLHL3"		c5p137042548FS	TTGCCATTTATGATTATGTTTTTG	c5p137042548ES	ACTGCTTTTTCTATCTGCTGTTTC
chr5	138448329	138448852	138420430	138420953	+	63845	523	68	L1HS	"COLO2T,COLO2N"	100013	566	"L1ME4a,L1HS,AT_rich"		SIL1		c5p138448590FS	TCCCACTGTTTAGAGTTAAGATCC	c5p138448590ES	TCATTCTCAGTAAACTATCGCAAG
chr5	138905136	138905248	138924952	138925064	-	11	112	2	noL1	"COLO2T,COLO2N"	2	70	AluSg7				c5p138905192FS	CTTTTAGTAGAGATGGGGTTTCAC	c5p138905192ES	AAAAATACAAAAATTAGCTGGGC
chr5	138945678	138946025	138965494	138965841	+	167	347	6	noL1	"COLO2T,COLO2N"	208	347	"AT_rich,AluSc"		UBE2D2		c5p138945851FS	AAACCAGATCTACACTTGAAGAGG	c5p138945851ES	GTATTTGAGCACTAATTCTGGTTG
chr5	139190107	139190666	139209923	139210482	-	10	559	7	noL1	"COLO2T,COLO2N"	8	559	"AluJb,L1MB5,(TTTC)n"		PSD2		c5p139190386FS	CTTTTTGGCCATTTGTATATTTTC	c5p139190386ES	AAATTGACAAAACCAAAAGAAGAC
chr5	143910222	143910859	143930029	143930666	-	41372	637	34	L1HS	"COLO2T,COLO2N"	25836	445	"L1HS,AT_rich,L1MA5"				c5p143910540FS	TAAACTAGTGGGGAAATTTTTCAG	c5p143910540ES	TGGGAGATATACCTAATGCTAGATG
chr5	144310892	144311192	144330699	144330999	-	5843	300	17	noL1	"COLO2T,COLO2N"	1243	361		"LINE:Ewing,Stewart"			c5p144311042FS	TCTACACACACACACACACACAC	c5p144311042ES	ATGAGATGCAGTAGAGTTCAGTTG
chr5	144453771	144454275	144473578	144474082	+	2571	504	24	L1HS	"COLO2T,COLO2N"	1148	437	"L1HS,L1MEf"				c5p144454023FS	AATAGTTGTGTGTGTGTGTGTGTG	c5p144454023ES	TCATTCTCAGTAAACTATCGCAAG
chr5	144788426	144788568	144808233	144808375	+	2825	142	7	L1PA5	"COLO2T,COLO2N"	3635	202	"L2a,L1PA5"				c5p144788497FS	TGCTCTTAATGTTTTCACACAGTC	c5p144788497ES	TTCCAGATTACCTCACCTAGTCTC
chr5	145369542	145369697	145389349	145389504	-	16	155	2	L1PA5	COLO2T	0	0	"L2b,L1PA5"		SH3RF2		c5p145369619FS	CCTTCTCTCTGTTTCTTTCTTCTG	c5p145369619ES	CGTATGTTTATTGTGGCACTATTC
chr5	145470880	145471069	145490687	145490876	+	20	189	4	L1PA2	"COLO2T,COLO2N"	76	178	"(TAA)n,AluSx,L1M5"				c5p145470974FS	CTGTATGTGTCCATTAGGTCAGAG	c5p145470974ES	AAATGAATGGAAAAGATAGTCTGC
chr5	145975217	145975661	145995024	145995468	+	20167	444	50	L1HS	"COLO2T,COLO2N"	24063	544	"L1HS,L1MA2"		PPP2R2B		c5p145975439FS	TATGTCTGTTTTTATGCCAGTACC	c5p145975439ES	TCATTCTCAGTAAACTATCGCAAG
chr5	146204072	146204736	146223879	146224543	+	3558	664	31	L1HS	"COLO2T,COLO2N"	3653	792	"L2a,L1HS"		PPP2R2B		c5p146204404FS	GTGGGAAAGCTAATCAAGTAGAAG	c5p146204404ES	TAATGCTAGATGACACGTTAGTGG
chr5	146293125	146293478	146312932	146313285	-	72	353	9	L1PA2	"COLO2T,COLO2N"	51	263	L1PA2		PPP2R2B		c5p146293301FS	TGTATTCAACCTTGGAATTGTAAC	c5p146293301ES	GATGAGTTCATGTCCTTTGTAGTG
chr5	147152890	147153053	147172697	147172860	-	21	163	2	L1PA3	"COLO2T,COLO2N"	7	203	"(TTTTA)n,L1PA3,MIR3"				c5p147152971FS	CTTGGTATTTTTAGTAGAGACGGG	c5p147152971ES	TACTATGCAGCCATAAAAATGATG
chr5	147317835	147318346	147337642	147338153	-	64890	511	38	L1HS	"COLO2T,COLO2N"	55648	1138	"T-rich,L1HS,MIRc"	"LINE:dbRIP,Ewing"			c5p147318090FS	AGTTTAAATATTTTTGGCAAGCTG	c5p147318090ES	GGGAGATATACCTAATGCAAGATG
chr5	150108691	150108915	150128498	150128722	+	39	224	3	L1PA3	"COLO2T,COLO2N"	29	257	"L1PA3,L1ME1"		DCTN4		c5p150108803FS	ATTGTCAGTCTTACCCATTTTAGC	c5p150108803ES	ATGATGAGTTCATGTCCTTTGTAG
chr5	150788684	150788999	150808491	150808806	-	861	315	13	L1PA4	"COLO2T,COLO2N"	353	315	"AT_rich,AluSx,L1PA4,MIRb"				c5p150788841FS	ATCCTGGAGACAAGTGATAAAGAG	c5p150788841ES	GCAAACACTGTTATGTTCTCACTC
chr5	151295990	151296447	151315797	151316254	-	48	457	5	L1PA2	"COLO2T,COLO2N"	11	72	"AluJr,L1PA2,(TTTTTA)n"				c5p151296218FS	TCCAGTTATTTCCTACAACAGATG	c5p151296218ES	TTCTGCATTCTTCATGTAGTTCTC
chr5	151442576	151443061	151462383	151462868	+	30840	485	47	L1HS	"COLO2T,COLO2N"	20966	485	"L1HS,L1MB7"	LINE:dbRIP	AK001582		c5p151442818FS	AGCTCATTCATTCACAGATAAAGC	c5p151442818ES	TCATTCTCAGTAAACTATCGCAAG
chr5	151456501	151456789	151476308	151476596	+	47014	288	21	L1HS	"COLO2T,COLO2N"	61576	382	"L1HS,MLT1K"	LINE:dbRIP	AK001582		c5p151456645FS	AATTCCCATTCTCTATGAACTCAG	c5p151456645ES	AGTAGCCATAATAAGCACAGGTTC
chr5	152245552	152246255	152265359	152266062	-	24	703	11	L1HS	"COLO2T,COLO2N"	1035	609	"L1MC,L1HS,MIR,L1M6"		AK123816		c5p152245903FS	CATTCATATCCCTCCAACTTTATC	c5p152245903ES	TGGGAGATATACCTAATGCTAGATG
chr5	152430333	152430804	152450140	152450611	-	180	471	17	L1HS	"COLO2T,COLO2N"	187	470	"AluJb,L1MD1,AT_rich,L1HS"				c5p152430568FS	GGCACAGTAGTCACACTTGTAATC	c5p152430568ES	TCTTAAGAACAAAAAGCCAAACAC
chr5	152659699	152659935	152679506	152679742	-	10	236	2	L1PA3	"COLO2T,COLO2N"	8	368	"(A)n,MIRc"				c5p152659817FS	TTTTATTATTTGGCTGGTAAGGAG	c5p152659817ES	AGGATCAGAAATTTCAAGTGACTC
chr5	153430030	153430195	153449837	153450002	+	13	165	4	noL1	"COLO2T,COLO2N"	6	162	"L1MA2,LTR22A"				c5p153430112FS	TTATTTTTGATTACAGTCACCCTG	c5p153430112ES	GAGTACTCAGACACAGGTATGCAG
chr5	154365891	154366301	154385698	154386108	-	15	410	4	L1PA7	"COLO2T,COLO2N"	29	410	"AluSp,L1PA7"				c5p154366096FS	TATTAAAACTATCTTGGGGTCAGG	c5p154366096ES	GAAATCCCATCTCTACTAAAAACAC
chr5	155050743	155051092	155070550	155070899	-	1470	349	9	L1PA2	"COLO2T,COLO2N"	2157	366	"L1PA2,L1M5"				c5p155050917FS	GTTCAAATGTACCAGGTTCTATCC	c5p155050917ES	AAGAGGGCTTAAGCTAGTTTTCTC
chr5	155272046	155272490	155339468	155339912	-	86615	444	51	noL1	"COLO2T,COLO2N"	69406	428	T-rich		SGCD		c5p155272268FS	CTTCATTAGCTTTTGTTCACCTTC	c5p155272268ES	CAAAAGGTATCCCTCTTTCCTAAG
chr5	155421144	155421570	155488566	155488992	-	1950	426	13	L1HS	"COLO2T,COLO2N"	2528	426	L1HS	LINE:dbRIP	SGCD		c5p155421357FS	GTCTAATTCCTATAGGCTCCCTTC	c5p155421357ES	TCATTCTCAGTAAACTATCGCAAG
chr5	156387781	156387968	156455203	156455390	+	24	187	3	noL1	"COLO2T,COLO2N"	80	189	"FLAM_C,(A)n"				c5p156387874FS	AACCAAGAAGATCAGCAATAAAAG	c5p156387874ES	AACAAAAACAAAAAGTTTCCTCTG
chr5	156886649	156886848	156954071	156954270	+	30	199	2	noL1	"COLO2T,COLO2N"	14	199	"AluY,THE1D"		ADAM19		c5p156886748FS	AGGGAGTTCTTACAAGATCTGATG	c5p156886748ES	CTCCCAAATAGCTGGGACTAC
chr5	157350184	157350301	157417606	157417723	+	22	117	2	noL1	"COLO2T,COLO2N"	22	65	"FLAM_C,A-rich"	Alu:Hormozdiari			c5p157350242FS	TAACAGTAAGGCTTTCTTGAGACC	c5p157350242ES	TAAAAATACAAAAATTAGCTGGGC
chr5	157799175	157800128	157866597	157867550	-	17773	953	26	noL1	"COLO2T,COLO2N"	16040	989	L1PA6	LINE:Ewing			c5p157799651FS	TAGATTCTGGATATTAGCCCTTTG	c5p157799651ES	TACCTAGGAATCCAACTTACAAGG
chr5	159170489	159170676	159237911	159238098	+	31	187	3	L1PA5	"COLO2T,COLO2N"	15	65	L1PA5				c5p159170582FS	GAACACAAACATTCTGACTGTAGC	c5p159170582ES	TAGAAGTCTTACTTGGAACCAACC
chr5	159283468	159283761	159350890	159351183	-	21494	293	17	noL1	"COLO2T,COLO2N"	19814	850	"Charlie18a,MIRc"	"LINE:Ewing,Iskow"	ADRA1B		c5p159283614FS	CCAAGATTTTCCTCTGAATACATC	c5p159283614ES	CTTCTGTGATTCCAAGACTTTAGG
chr5	159952413	159952736	160019835	160020158	+	30	323	2	noL1	"COLO2T,COLO2N"	36	330	L1PA3		ATP10B		c5p159952574FS	TGGTTTTATCTACTTTTGGTCTTTG	c5p159952574ES	CTAGTCAAAGAAAGGGGTGACAG
chr5	160068732	160069241	160136154	160136663	-	120	509	7	L1HS	"COLO2T,COLO2N"	97	509	"L1HS,L1M5"		ATP10B		c5p160068986FS	GCAAATCAGTACAGACAGACAGAC	c5p160068986ES	TCATTCTCAGTAAACTATCGCAAG
chr5	160345284	160345632	160412706	160413054	-	15	348	5	L1PA8A	"COLO2T,COLO2N"	4	65	L1PA8A				c5p160345458FS	AATCACTTTTGTTTTTAATGCCAG	c5p160345458ES	CAGGAATAGAAAACCAGATACCAC
chr5	161144297	161144531	161211719	161211953	+	78	234	6	L1PA4	"COLO2T,COLO2N"	209	276	L1PA4				c5p161144414FS	TTTAATTCCTGAGAATTTCCACTC	c5p161144414ES	TACTATGCAGCCATAAAAATGATG
chr5	162752429	162752946	162819851	162820368	+	1498	517	10	L1PA16	"COLO2T,COLO2N"	2032	335	"(CA)n,L1PA16"				c5p162752687FS	TCCTTTCTCAATTCCTTATTTTTG	c5p162752687ES	TACAAGGAGAACTACAAAGCACTG
chr5	164282892	164283218	164350314	164350640	-	16	326	2	L1PA3	"COLO2T,COLO2N"	1	65	"L1PA13,L1PA3,(TTA)n"				c5p164283055FS	TTTTGTATGGCAGCATACTATTTC	c5p164283055ES	AACTAGAAATACCATTTGACCCAG
chr5	164286726	164287020	164354148	164354442	-	308	294	11	L1PA3	"COLO2T,COLO2N"	631	294	"L1PA3,L1PA7"				c5p164286873FS	GTCTTAATTCTTTATCCAGCTTGC	c5p164286873ES	TCATCATTCTCAGTAAACTATCGC
chr5	164427379	164427768	164494801	164495190	-	3072	389	18	L1PA11	"COLO2T,COLO2N"	1861	389	Tigger14a	LINE:Stewart			c5p164427573FS	AAAGGGAAATTGTGCAGTATAGAG	c5p164427573ES	AATGGGTGCTGAATTTAATACTTG
chr5	164540443	164540925	164607865	164608347	-	20	482	4	L1PA5	"COLO2T,COLO2N"	20	482	"L1PB1,L1PA5,AluSz"				c5p164540684FS	CTCTTTCTTCTTGGTTAATCTTGC	c5p164540684ES	ATCACTAGAGGTCAGGAGTTTGAG
chr5	164585696	164586054	164653118	164653476	+	11	358	5	noL1	"COLO2T,COLO2N"	7	70	"AT_rich,AluY"				c5p164585875FS	CAAACCCTGCTACTGATACCTAAG	c5p164585875ES	GCTTTGGAACTAAAGAAAACATTC
chr5	164908068	164908791	164975490	164976213	+	12	723	2	noL1	COLO2T	0	0	"(CAAAA)n,L1M5,MLT1A0"				c5p164908429FS	TGTATTTCCATATCTGTGAATTGG	c5p164908429ES	ATATCATGAAAAGCAGTGAATGTG
chr5	165225049	165225483	165292471	165292905	-	12	434	5	noL1	"COLO2T,COLO2N"	11	69	"MIR,(T)n"				c5p165225266FS	AGTTTTAAAGGAACAAACATCGAG	c5p165225266ES	CTGTAGGAGTCTAAAGCCTGAATC
chr5	165301303	165301570	165368725	165368992	+	15	267	5	noL1	"COLO2T,COLO2N"	37	266	"(A)n,L1MA7"				c5p165301436FS	AAATCCTGTCTCTACTGAAAATGC	c5p165301436ES	TTCCCTCCTCTTTAATCATACATC
chr5	165781085	165781607	165848507	165849029	+	258228	522	35	L1HS	"COLO2T,COLO2N"	355896	522	L1HS	LINE:dbRIP			c5p165781346FS	CAATATAAAAATGTCTGTGCCAAG	c5p165781346ES	CCATCATTCTCAGTAAACTATTGC
chr5	166325763	166326407	166393185	166393829	-	2816	644	15	L1HS	"COLO2T,COLO2N"	673	506	"L2c,AT_rich,L1HS"	LINE:dbRIP			c5p166326085FS	TATAAAGGAGACATGATGAACACC	c5p166326085ES	TAATGCTAGATGACACGTTAGTGG
chr5	167503517	167503813	167570939	167571235	-	238	296	7	L1PA2	"COLO2T,COLO2N"	277	297	"L1PA2,AluSp"		"ODZ2,CR607597"		c5p167503665FS	AATAATTGTCTGGTTTCCTCAAAG	c5p167503665ES	TAGACTGGATTAAGAAAATGTGGC
chr5	169364603	169364776	169432025	169432198	+	11	173	3	L1PA2	"COLO2T,COLO2N"	8	170	"L1PA2,L1MB7"		DOCK2		c5p169364689FS	AGTATTTGTATGCCCTGTCTTCTC	c5p169364689ES	CGTATGTTTATTGTGGCATTATTC
chr5	170443399	170443541	170510794	170510936	-	26	142	2	L1PA2	COLO2T	0	0	THE1B		"DKFZp666P032,RANBP17"		c5p170443470FS	AGCAGCCTGAACTAAGACAATTAC	c5p170443470ES	ATGATGAGTTCATGTCCTTTGTAG
chr5	170762557	170762661	170829952	170830056	-	101	104	4	noL1	"COLO2T,COLO2N"	126	67	"SVA_F,(TTTA)n,MSTA"		NPM1		c5p170762609FS	CTATTCACAATAGCAAAGACATGG	c5p170762609ES	TGTGTAGAAAGAAGTAGACATGGG
chr5	171798497	171798914	171865892	171866309	+	12	417	5	noL1	"COLO2T,COLO2N"	5	397	"AluSx,(A)n,MIRb"		SH3PXD2B		c5p171798705FS	TCCATAATGGGTTATTAGTGATGG	c5p171798705ES	AGAGTTTCTCTGAAGAGGTAATGG
chr5	172640914	172641198	172708308	172708592	-	95	284	11	L1HS	"COLO2T,COLO2N"	240	362	L1HS				c5p172641056FS	GAAACCCCGTCTCTACTAAAAATAC	c5p172641056ES	GAAAATATAAATGGGTCTCAATGG
chr5	172761945	172762457	172829339	172829851	-	25133	512	35	L1HS	"COLO2T,COLO2N"	22784	1165	L1HS				c5p172762201FS	CAGTCTATCATTGTTGGACATTTG	c5p172762201ES	TCATTCTCAGTAAACTATCGCAAG
chr5	172853859	172854020	172921253	172921414	-	239	161	8	noL1	"COLO2T,COLO2N"	470	71	"(A)n,(T)n,MLT1A1"				c5p172853939FS	AACAAAGACGAAAATGATAAAAGC	c5p172853939ES	CAATCTTCCTCCTTTTTCAGG
chr5	173899920	173900415	173967314	173967809	+	1180	495	12	L1PA2	"COLO2T,COLO2N"	423	495	"L1MB2,L1PA2"				c5p173900167FS	ATCTCCAGAACTCTTTTCATTTTG	c5p173900167ES	TCATTCTCAGTAAACTATCGCAAG
chr5	173999617	174000006	174067011	174067400	+	10	389	2	noL1	"COLO2T,COLO2N"	7	392	AluY				c5p173999811FS	GGTATAGAATTTGAACAGGAATGG	c5p173999811ES	AGAAGTCATTGAAAGATTTTGACC
chr5	174498553	174498931	174565947	174566325	+	35	378	6	L1PA3	"COLO2T,COLO2N"	129	158	L1PA3				c5p174498742FS	GAGTTATGCATGTAAAGCTTAGGG	c5p174498742ES	TCATTCTCAGTAAACTATCGCAAG
chr5	177137833	177138133	177205227	177205527	+	766	300	13	L1HS	"COLO2T,COLO2N"	906	297	"AluJb,L1HS"		FAM153A		c5p177137983FS	AGCTGGGATTGTAGCTATGTGTAG	c5p177137983ES	GATGAGTTCATATCCTTTGTAGGG
chr5	178289896	178290573	178357290	178357967	-	44	677	5	noL1	"COLO2T,COLO2N"	30	67	"AluSx1,MIRc"		ZFP2		c5p178290234FS	ACACACATCCAAACTATACCACC	c5p178290234ES	AGGTAGAGAAATAGGAAGGGAGAG
chr5	179732096	179733046	179799490	179800440	+	109	950	7	noL1	"COLO2T,COLO2N"	95	951	"L2a,AluSc,AluY,L1M5"				c5p179732571FS	TTGGCATATATCAGTGAACAAAAC	c5p179732571ES	GGATCACGAGGTCAAGAAATC
chr6	928435	928775	983435	983775	+	52	340	2	noL1	"COLO2T,COLO2N"	8	65	"L3b,AluY,AluSz"		"BC126314,BC037855"		c6p928605FS	AATATCAAGACATGACAAATGCTG	c6p928605ES	GATAAAAAGGGAATAACTTGGGAG
chr6	2362330	2363064	2417331	2418065	-	16807	734	31	L1HS	"COLO2T,COLO2N"	18601	734	"Charlie1a,L1HS,MLT1C"	LINE:dbRIP	AJ420566		c6p2362697FS	ATGATTATAAAGGGATTGCTCAAC	c6p2362697ES	GAGGGATAGCATTGGGAGATATAC
chr6	2746111	2746813	2801112	2801814	-	5511	702	44	L1HS	"COLO2T,COLO2N"	4899	491	"MER70-int,L1HS,MER70A"				c6p2746462FS	GTCCTGTTTCTAGGGGAGACTG	c6p2746462ES	TAATGCTAGATGACACGTTAGTGG
chr6	4645562	4645841	4700563	4700842	+	10	279	4	L1PA4	"COLO2T,COLO2N"	43	285	"L1ME3D,L1PA4"				c6p4645701FS	TATCCTTGAAGCCTCCTGTATAAC	c6p4645701ES	CAAATGTCCAACAATGATAGACTG
chr6	7700483	7700593	7755484	7755594	-	973	110	6	noL1	"COLO2T,COLO2N"	1119	997	L1MEc		BMP6		c6p7700538FS	TTTGTATTTTTAGTAGAGACCGGG	c6p7700538ES	TTTCAGATAAATAAAAGCTGAGGG
chr6	8715499	8715780	8770500	8770781	-	69	281	10	L1PA2	"COLO2T,COLO2N"	83	542	L1PA2				c6p8715639FS	GTCACTTTTCTCATCTGTGAGTTG	c6p8715639ES	TCATTCTCAGTAAACTATCGCAAG
chr6	9795975	9796083	9687989	9688097	+	16	108	3	L1PA3	"COLO2T,COLO2N"	4	112	L1PA3				c6p9796029FS	ATTGTCACCTAATTAGTTCATGGG	c6p9796029ES	ATGTACACGTATGTTTATTGTGGC
chr6	10442524	10442695	10334538	10334709	+	100	171	8	L1HS	"COLO2T,COLO2N"	14	131	"L1HS,A-rich"				c6p10442609FS	GAAATGGAGTTTCACTCTTGTTG	c6p10442609ES	CTGTAATAGACGCACAATAAATGG
chr6	12263248	12263427	12155262	12155441	-	61	179	3	L1PA8	"COLO2T,COLO2N"	79	794	L1MEc		HIVEP1		c6p12263337FS	CATTAGGACAAATACCTAATGCATAC	c6p12263337ES	CAAACTAATGCAGGAAGAGAAAAC
chr6	12729781	12730080	12621795	12622094	-	222	299	7	noL1	"COLO2T,COLO2N"	263	316	"L1PA4,THE1D"				c6p12729930FS	ACTGGCCACTAGAGATAGAATGAC	c6p12729930ES	TTAAAATCTATGCACAATACCTGG
chr6	13298991	13299358	13191012	13191379	+	137	367	7	noL1	"COLO2T,COLO2N"	217	599		"LINE:Beck,Ewing,Iskow,Stewart"	PHACTR1		c6p13299174FS	TGAGTATAATAAACCTTATGGCTGC	c6p13299174ES	TGGTTATAAAGAGGAGGATCTGAG
chr6	13611029	13611387	13503050	13503408	+	1143	358	6	noL1	"COLO2T,COLO2N"	2618	359	MLT2B4	"LINE:Beck,dbRIP,Ewing,Iskow,Stewart"			c6p13611208FS	ATTGCTCTTGTTACTAAAGATGGC	c6p13611208ES	AAACAAATTGGAAGAACTCATAGG
chr6	16646429	16646703	16538450	16538724	-	39	274	2	L1PA4	"COLO2T,COLO2N"	16	274	"MIR,L1PA4"		ATXN1		c6p16646566FS	ATCATGGTGATACCCCATCTCTAC	c6p16646566ES	GAGACTATCTCAATCGCAAGGAC
chr6	16970357	16970595	16862378	16862616	+	81	238	5	L1HS	"COLO2T,COLO2N"	138	298	A-rich				c6p16970476FS	TGTAGAATCACAAAGCTCAGAGAG	c6p16970476ES	TCATTCTCAGTAAACTATCGCAAG
chr6	17543853	17544410	17435874	17436431	+	1005	557	22	L1HS	"COLO2T,COLO2N"	208	557	"(TTCC)n,L1HS,(A)n,AluSz,L1MC4a"		"DKFZp686D0714,CAP2"		c6p17544131FS	CAACATGGTAAAACCTTGTCTCTAC	c6p17544131ES	ACACCGCATATTCTCACTCATAG
chr6	17722551	17722755	17614572	17614776	+	47	204	2	noL1	"COLO2T,COLO2N"	43	65	MER8				c6p17722653FS	CATTGACATGATTTAGACAACTCC	c6p17722653ES	TGTAATCACAGCTACTTAGGAGGC
chr6	17904389	17904820	17796410	17796841	-	72	431	3	noL1	"COLO2T,COLO2N"	93	435	"T-rich,AluSg,MER57B1"		KIF13A		c6p17904604FS	GGTTGGTAATTTCTTTCATCATTC	c6p17904604ES	GAAATTTCACAGACTCCTTTAAGC
chr6	18979787	18980373	18871808	18872394	-	40	586	2	noL1	COLO2T	0	0	"L1MB2,L1PB1,AT_rich,AluY"				c6p18980080FS	ACCAAACATCATATGTTCTCACTG	c6p18980080ES	TGAAACCCCATCTCTACTAAAAATAC
chr6	19018501	19018896	18910522	18910917	-	8534	395	17	L1HS	"COLO2T,COLO2N"	19629	471	L1HS				c6p19018698FS	TCTGCTATGATTATGTTTCCTCAG	c6p19018698ES	GATGAGTTCATATCCTTTGTAGGG
chr6	19693932	19694225	19585953	19586246	-	49	293	8	L1PA3	"COLO2T,COLO2N"	46	295	"L1PA3,AluSc"				c6p19694078FS	TGTGCTAATTTCTGTTTTTGAGTG	c6p19694078ES	TAGACTGGATTAAGAAAATCTGGC
chr6	19879068	19879503	19771089	19771524	+	3291	435	43	L1HS	"COLO2T,COLO2N"	5023	435	"Tigger1,AluJr,L1HS,(A)n"	LINE:dbRIP			c6p19879285FS	TTTTTGTAGAGATGGGGTATCAC	c6p19879285ES	GATGAGTTCATATCCTTTGTAGGG
chr6	20996540	20996863	20888561	20888884	-	279	323	3	L1PA4	"COLO2T,COLO2N"	203	67	"L1PA4,L1PA6"		CDKAL1		c6p20996701FS	CGTTAACTTGTCATTTACGTTAGG	c6p20996701ES	AACTAGAAATACCATTTGACCCAG
chr6	21794576	21795002	21686597	21687023	-	13	426	3	noL1	"COLO2T,COLO2N"	8	426	"AluSc8,(A)n,AluYc,MER103C"		"AK026189,AK310212"		c6p21794789FS	ACACAATAAATGTAATGCACTTGG	c6p21794789ES	CAAATTATCACTCTACAGGACACG
chr6	23340826	23340990	23232847	23233011	-	19	164	2	L1PA3	"COLO2T,COLO2N"	3	164	"L1MC2,L1PA3"				c6p23340908FS	TAGTATATCTACCCCACACCCATC	c6p23340908ES	TCATTCTCAGTAAACTATCGCAAG
chr6	23918247	23918517	23810268	23810538	+	11726	270	8	L1PA3	"COLO2T,COLO2N"	21405	272	"L1PA3,L1PA7"				c6p23918382FS	CAGAACTAGGCTAATAAAAGCAGG	c6p23918382ES	TAGACTGGATTAAGAAAATGTGGC
chr6	24919390	24919947	24811411	24811968	-	21812	557	43	L1HS	"COLO2T,COLO2N"	9650	464	"L1HS,AluSz"	LINE:dbRIP	FAM65B		c6p24919668FS	TTTTGTGTTTTCAGTAAGGATGAG	c6p24919668ES	TGGGAGATATACCTAATGCTAGATG
chr6	25516459	25517050	25408480	25409071	+	67	591	2	noL1	"COLO2T,COLO2N"	46	589	"MIR,AluJb,L2b,FLAM_A"		LRRC16A		c6p25516754FS	TTAAAGGGGTAACATGTAAAAAGC	c6p25516754ES	AAGTTTAAAAATTACCTGGGTGTG
chr6	27740194	27740503	27632215	27632524	+	18	309	6	noL1	"COLO2T,COLO2N"	109	309	"(A)n,AluSp"				c6p27740348FS	TTTTGTGAAATGACTTACAAGAGC	c6p27740348ES	TTTTCCTAAAACTCAATACTTCCG
chr6	28268093	28268206	28160114	28160227	-	23	113	5	noL1	"COLO2T,COLO2N"	27	113	"AluJb,L1MD1"				c6p28268149FS	ACTATGCTTTTAACTTGCATTTCC	c6p28268149ES	TGTAGAGACGGGGTCTTTCTATG
chr6	30498132	30498434	30390153	30390455	-	464	302	6	L1PA4	"COLO2T,COLO2N"	341	681	"L1PA3,L1PA4"				c6p30498283FS	TATATCTCCTAATGCTATCCCTCC	c6p30498283ES	GTGATGAGTTCATGTCCTTTGTAG
chr6	32486574	32487028	32378596	32379050	+	5434	454	15	L1HS	"COLO2T,COLO2N"	14291	453	"L1HS,MIRb,MIRc"	LINE:dbRIP			c6p32486801FS	CTATGTGGATGAAGATACATCTGG	c6p32486801ES	TCATTCTCAGTAAACTATCGCAAG
chr6	32697582	32697829	32589604	32589851	+	91	247	5	noL1	"COLO2T,COLO2N"	73	191	MER66B	"Alu:Stewart,LINE:dbRIP,Ewing,Stewart"			c6p32697705FS	AACTTGGGTATGAGAATAGGATTG	c6p32697705ES	AAGGATGAGACAGTGGTGTTAGAC
chr6	32784276	32784718	32676298	32676740	-	31778	442	53	L1HS	"COLO2T,COLO2N"	37797	452	"T-rich,L1HS,LTR19A,Tigger4b"	LINE:dbRIP			c6p32784497FS	CTATAGGATCTGGATTGACAGAGC	c6p32784497ES	GATGAGTTCATATCCTTTGTAGGG
chr6	33119211	33119525	33011233	33011547	-	1952	314	20	L1PA3	"COLO2T,COLO2N"	1383	216	"L1PA3,L1MA4"				c6p33119368FS	CTAGTTCTGTGAAGAATGATGGTG	c6p33119368ES	ATGATGAGTTCATGTCCTTTGTAG
chr6	33400296	33400682	33292318	33292704	-	82	386	6	noL1	"COLO2T,COLO2N"	92	386	"AluSc8,AluJb"				c6p33400489FS	TAATTTCAAGAACCTCAACTTTCC	c6p33400489ES	TTTTGTGTTTTTAGTAGAGACGGG
chr6	33836522	33836799	33728544	33728821	-	33307	277	31	noL1	"COLO2T,COLO2N"	33062	393	AluSc				c6p33836660FS	ACATGTTGACGTGTATGTGAGG	c6p33836660ES	AGCTTAAGGAAGCTGATGTCC
chr6	35433682	35434063	35325704	35326085	-	22	381	2	noL1	"COLO2T,COLO2N"	9	65	MLT1D		PPARD		c6p35433872FS	TTTTTAGTAGAGACGGGATTTCAC	c6p35433872ES	CTTAAAATAAGAACAGGGATCAGC
chr6	35902715	35903152	35794737	35795174	-	232	437	17	L1PA2	"COLO2T,COLO2N"	176	437	"MLT1F2,L1PA2"				c6p35902933FS	CTTAAGGTGCATCTGCCTATAAC	c6p35902933ES	TCATTCTCAGTAAACTATCGCAAG
chr6	37205461	37205649	37097483	37097671	+	11	188	3	noL1	"COLO2T,COLO2N"	18	66	"AluJo,FLAM_A"				c6p37205555FS	TATAGCTTTCCGGTAACACTCATC	c6p37205555ES	AAAAGAACTAGGTGTGTGGTGG
chr6	37956713	37957239	37848735	37849261	+	123146	526	39	L1HS	"COLO2T,COLO2N"	78046	525	"L1HS,AluSx3"		ZFAND3		c6p37956976FS	ATGTTCAAAACCCTATATAGCTCG	c6p37956976ES	CGTGTATATTCTGAAAAGTTCGTG
chr6	37984252	37984521	37876274	37876543	+	185	269	8	L1HS	"COLO2T,COLO2N"	45	267	"L1PA2,MER21B,L1MC4"		ZFAND3		c6p37984386FS	GTAACAAGTCAATGAGACATCTGG	c6p37984386ES	GGTTAAACATTTTGACAAGGATTC
chr6	38268759	38268980	38160781	38161002	+	12	221	3	L1PA4	"COLO2T,COLO2N"	8	153	"MIR,L1PA4"		BTBD9		c6p38268869FS	GTCTTAAGAATAGACAGTGTCGGG	c6p38268869ES	GATTAGATGGTGCAGTTGACTCTC
chr6	38374460	38374670	38266482	38266692	-	47	210	3	L1PA4	"COLO2T,COLO2N"	2	206	"L1MA4A,L1PA4"		BTBD9		c6p38374565FS	TCCTTCTCCTGACCAATATAAAAG	c6p38374565ES	CAAATGTCCAACAATGATAGACTG
chr6	39753042	39753360	39645064	39645382	-	74	318	7	L1HS	"COLO2T,COLO2N"	29	484	"L1MEd,L1HS"		KIF6		c6p39753201FS	AATATGCTTGATTACTGAATGCTG	c6p39753201ES	CAAATGTCCAACAATGATAGACTG
chr6	41203601	41204334	41095623	41096356	-	19815	733	29	L1PA2	"COLO2T,COLO2N"	20461	837	"AluSc8,(TTTTA)n,L1PA3,L1PA2"		LOC221442		c6p41203967FS	TGAGATGGAGTCTCTCTCTGTTG	c6p41203967ES	TAATGCTAGATGACACGTTAGTGG
chr6	42362967	42363141	42254989	42255163	+	52	174	3	L1PA2	"COLO2T,COLO2N"	91	65	L1PA2		"rapa,TRERF1"		c6p42363054FS	GATTAGGCAATGAGAGAAGATGG	c6p42363054ES	CAAATGTCCAACAATGATAGACTG
chr6	44952328	44952677	44844350	44844699	+	216	349	10	L1PA2	"COLO2T,COLO2N"	238	88	"L1PA2,(A)n,L1ME2z,L1M4"		SUPT3H		c6p44952502FS	CCATGCACTGGGATATTAAGTAG	c6p44952502ES	ATGATGAGTTCATGTCCTTTGTAG
chr6	46418244	46418679	46310285	46310720	+	267011	435	103	noL1	"COLO2T,COLO2N"	435051	435	"L1ME4a,AluJr"	"LINE:dbRIP,Ewing,Iskow"	RCAN2		c6p46418461FS	ATATGTTGTTCCCTTGTATTCTGG	c6p46418461ES	AAGGTGAAGTGGAGAAAGATGTAG
chr6	48976232	48976630	48868273	48868671	-	80058	398	48	L1HS	"COLO2T,COLO2N"	85331	397	"MLT2B1,L1HS"				c6p48976431FS	AAGGGACTAAAAAGAGTGTGTGAG	c6p48976431ES	GATGAGTTCATATCCTTTGTAGGG
chr6	50559303	50559507	50451344	50451548	+	52	204	5	L1PA4	"COLO2T,COLO2N"	50	205	"L1MD1,L1PA4"		CR592675		c6p50559405FS	TTAACTGTAGATTTCTTTCTGGGG	c6p50559405ES	CCCAAATATCCAACAATGATAGAC
chr6	50719299	50719733	50611340	50611774	-	311947	434	26	L1HS	"COLO2T,COLO2N"	242764	248	"L1HS,L1PA6"				c6p50719516FS	CTGCCATCATAGTACACAAGACAG	c6p50719516ES	ACACCGCATATTCTCACTCATAG
chr6	51736502	51736665	51628543	51628706	-	273	163	5	L1PA2	"COLO2T,COLO2N"	56	160	L2		PKHD1		c6p51736583FS	AGTTCCTTTCAAAATAGCCTGTAG	c6p51736583ES	TAGATTCTGGATATTAGCCCTCTG
chr6	51778934	51779160	51670975	51671201	+	16	226	4	L1PA4	"COLO2T,COLO2N"	6	113	"L2b,L1PA4"		PKHD1		c6p51779047FS	TTTCCCTCTCTATATGACATTTCC	c6p51779047ES	ATAGTGCCACAATAAACATACGTG
chr6	51853491	51853800	51745532	51745841	+	24026	309	47	L1HS	"COLO2T,COLO2N"	26311	465	"L1HS,AluY"	LINE:dbRIP	PKHD1		c6p51853645FS	CAGGGAATTTTGTTAAATAAGTGG	c6p51853645ES	TCATTCTCAGTAAACTATCGCAAG
chr6	51874398	51874753	51766439	51766794	+	202	355	8	L1PA3	"COLO2T,COLO2N"	71	354	L1PA3		PKHD1		c6p51874575FS	GAAGCTGCGTAAATAAAAGAGTTC	c6p51874575ES	TCATTCTCAGTAAACTATCGCAAG
chr6	52063460	52063982	51955501	51956023	-	16	522	3	L1PA3	"COLO2T,COLO2N"	7	522	"LTR33,LTR88b,L1PA3"				c6p52063721FS	CCCTACTAGATCTCAGCTTCTGAC	c6p52063721ES	GCTGGTATAAAGACATATGCACAC
chr6	52087198	52087390	51979239	51979431	+	11	192	3	L1PA4	"COLO2T,COLO2N"	2	65	L2a				c6p52087294FS	TCTTCTCAGTTACTTTTTCTTGGC	c6p52087294ES	GTGAGAATTGAACAATGAGAACAC
chr6	52417989	52418091	52310030	52310132	-	29	102	5	L1PA2	"COLO2T,COLO2N"	22	108	"L1PA2,L1PA5"		EFHC1		c6p52418040FS	CAGAAAGAATGGTACTAGCTCCTC	c6p52418040ES	GGACACATTTAAAGCAGTGTGTAG
chr6	54378350	54378581	54270391	54270622	-	81	231	2	L1PA3	"COLO2T,COLO2N"	9	395					c6p54378465FS	AACATCCTTTGAAAAAGTTGTACC	c6p54378465ES	TCATCATTCTCAGTAAACTATCGC
chr6	54810581	54810983	54702622	54703024	-	10352	402	16	L1HS	"COLO2T,COLO2N"	14419	351	"L2a,L1HS"				c6p54810782FS	TTAGAACTCTGTCTTTTGACATGG	c6p54810782ES	GATGAGTTCATATCCTTTGTAGGG
chr6	55620122	55620578	55512163	55512619	-	55410	456	66	L1HS	"COLO2T,COLO2N"	77038	457	"L1HS,L1MA4A,(T)n"				c6p55620350FS	TGTATTCTCTTGCAGAATTGAGAC	c6p55620350ES	TCATTCTCAGTAAACTATCGCAAG
chr6	55702557	55702978	55594598	55595019	-	6573	421	41	L1HS	"COLO2T,COLO2N"	5272	467	"L1HS,(T)n"	LINE:dbRIP			c6p55702767FS	AATAATTAATTCCTAGGACAGCCC	c6p55702767ES	ACAACTGCTTTATTAATAGCTGGG
chr6	57556626	57557148	57448667	57449189	-	18	522	3	L1PA3	"COLO2T,COLO2N"	4	202	"L1PA3,AT_rich,(TTA)n"		PRIM2		c6p57556887FS	ATAACTTTTCTCTGGTTTTCGTTG	c6p57556887ES	ATTCTCACTGATAGATGGGAATTG
chr6	58123051	58123406	58015092	58015447	-	11	355	2	L1PA3	"COLO2T,COLO2N"	4	65	L1PA3				c6p58123228FS	GTGTTGTTCTTCAGTTTTTGTGAC	c6p58123228ES	CAAATCATGCTGCTATAAAGACAC
chr6	58173256	58173548	58065297	58065589	+	11	292	2	noL1	"COLO2T,COLO2N"	5	65	L1PA3				c6p58173402FS	AAGATAAGGATGTATGTAGGCCAG	c6p58173402ES	TCAGGGATCTAGAACTGGAAATAC
chr6	58885030	58885599	58777071	58777640	-	810	569	8	noL1	"COLO2T,COLO2N"	1026	188	ALR/Alpha	"Alu:Hormozdiari,Stewart"			c6p58885314FS	GTCTCTGCTAGAAAAGGAAACATC	c6p58885314ES	TACCAAAAGAAAGTTTAAAGACGG
chr6	62969041	62969217	62911082	62911258	+	16	176	3	L1PA4	COLO2T	0	0	L1PA4		KHDRBS2		c6p62969129FS	AGCTTAAGGTATTAGGCACAAATG	c6p62969129ES	TGATGAGTTCATGTTCTTTGTAGG
chr6	63183872	63184003	63125913	63126044	+	229	131	3	noL1	COLO2T	0	0	HAL1				c6p63183937FS	CATGTACCACTCCTCTTTACTTCC	c6p63183937ES	GAAAATAAAGGATGCAATTTTGAG
chr6	63315826	63316212	63257867	63258253	+	16	386	3	L1PA4	"COLO2T,COLO2N"	8	120	L1PA4				c6p63316019FS	GCAAGAAAAAGAGAAGAGAGAGAG	c6p63316019ES	AACCATCATTCTCAGCAAATTATC
chr6	63426167	63426291	63368208	63368332	+	23	124	2	noL1	"COLO2T,COLO2N"	13	321					c6p63426229FS	CATAGTCCTTTAGATTGCATTGTG	c6p63426229ES	AGTTAACACTTCATGGAAACACAG
chr6	63889986	63890377	63832027	63832418	+	752	391	15	L1PA3	"COLO2T,COLO2N"	464	526	"AluJb,L1PA3,AT_rich"				c6p63890181FS	ATTTACACATTTTCTTCTTCTGCC	c6p63890181ES	TGGAAATCATCATTCTCAGTAAAC
chr6	65162358	65162680	65105637	65105959	+	30	322	2	L1PA2	"COLO2T,COLO2N"	29	65	"(CA)n,L1ME3A,L1PA2"				c6p65162519FS	TTTGTTAAATGCTCAACAGAAATG	c6p65162519ES	TCATTCTCAGTAAACTATCGCAAG
chr6	65908149	65908366	65851428	65851645	+	26	217	2	L1PA4	"COLO2T,COLO2N"	3	65	"L1MDa,(TCTA)n"				c6p65908257FS	GTTTGCTCTGCATATTGTACTGTC	c6p65908257ES	ATGAGTTCATGTCATTTGTAGGG
chr6	66276465	66276625	66219744	66219904	-	37	160	3	L1PA3	"COLO2T,COLO2N"	13	76	HAL1		"UNQ9424,EYS"		c6p66276545FS	AACATCTTTTTAATCCTTGTTTGC	c6p66276545ES	TCATTCTCAGTAAACTATCGCAAG
chr6	66282560	66282684	66225839	66225963	+	16	124	2	L1PA3	"COLO2T,COLO2N"	6	65	"GA-rich,L1PA3,L2c"		"UNQ9424,EYS"		c6p66282622FS	TCACATTTGTAGGGACTTTAAACC	c6p66282622ES	CAAATGTCCAACAATGATAGACTG
chr6	66316411	66317004	66259690	66260283	-	2723	593	29	L1HS	"COLO2T,COLO2N"	3467	595	"L1HS,(T)n"	LINE:dbRIP	"UNQ9424,EYS"		c6p66316707FS	ATATGTTTTTCCAACCTGACTTTC	c6p66316707ES	ACACCGCATATTCTCACTCATAG
chr6	66844047	66844397	66787326	66787676	-	59976	350	76	L1HS	"COLO2T,COLO2N"	40447	316	"(TTTTA)n,L1MA1,L1HS,AT_rich"	LINE:dbRIP			c6p66844222FS	CATATATTTATGGGGTACAGGAGC	c6p66844222ES	GATGAGTTCATATCCTTTGTAGGG
chr6	67370360	67370660	67313639	67313939	+	138043	300	43	L1HS	"COLO2T,COLO2N"	145898	511	"L2a,L1HS"				c6p67370510FS	GAAATGCTAGAAAGGACCAATAAG	c6p67370510ES	TAGACTGGATTAAGAAAATGTGGC
chr6	68188598	68188999	68131877	68132278	-	995	401	5	L1PA7	"COLO2T,COLO2N"	1281	83	AT_rich				c6p68188798FS	TAGTAATCTCATGCCAATTAATGC	c6p68188798ES	AGGGATAGCATTAGGAGAAACAC
chr6	69199764	69200334	69143043	69143613	+	61379	570	47	L1HS	"COLO2T,COLO2N"	59546	570	"THE1B,L1HS,AT_rich"				c6p69200049FS	CTGATCTTGTAGCTCCCATAATTC	c6p69200049ES	ATGCTAGATGACATGTTAGTGGG
chr6	69255280	69255503	69198559	69198782	-	159	223	6	noL1	"COLO2T,COLO2N"	490	456	L2a	"LINE:dbRIP,Ewing,Iskow,Stewart"			c6p69255391FS	AAATGGTATAGCCAATTACACACC	c6p69255391ES	AGAAATTATGCAAGGCAGTTTATC
chr6	69579285	69580137	69522564	69523416	-	121	852	13	L1PA4	"COLO2T,COLO2N"	121	882	"THE1A,L1PA7"		BAI3		c6p69579711FS	GTGATTAACTGTGAATGTTGCTTC	c6p69579711ES	TGTGAGCCTACATACTTGCTACAG
chr6	69870454	69870672	69813733	69813951	-	382	218	6	L1PA2	"COLO2T,COLO2N"	663	131	L1PA2		BAI3		c6p69870563FS	CCAACTTTCTGTCTCAATAATCAC	c6p69870563ES	TCATTCTCAGTAAACTATCGCAAG
chr6	70134716	70134849	70077995	70078128	+	11	133	2	L1PA2	"COLO2T,COLO2N"	8	415	"(TCCA)n,L1PA2"		BAI3		c6p70134782FS	CTTCTGGATACCATAATTCATTCC	c6p70134782ES	ATACACCATGGAATACTATGAGGC
chr6	70267952	70268288	70211231	70211567	+	9294	336	35	L1PA2	"COLO2T,COLO2N"	17733	486	"L1PA2,L1M3f"				c6p70268120FS	ACTGGGTGGAATGTTCTATAATTG	c6p70268120ES	TCATTCTCAGTAAACTATCGCAAG
chr6	70782935	70783476	70726214	70726755	+	53450	541	30	L1HS	"COLO2T,COLO2N"	47680	412	"L1HS,AT_rich,L1ME1"	LINE:dbRIP	COL19A1		c6p70783205FS	CAGTGTATTAGGGTTCCTGATTTC	c6p70783205ES	TTCTCAGTAAACTATCGCAAGAAC
chr6	71524989	71525144	71468268	71468423	+	15	155	2	L1PA2	"COLO2T,COLO2N"	6	165	L2		SMAP1		c6p71525066FS	AAAATCTGCAAAATAAAGAACTGC	c6p71525066ES	TCATTCTCAGTAATCTATCGCAAG
chr6	71894144	71894556	71837423	71837835	-	316	412	7	L1PA2	"COLO2T,COLO2N"	549	403	"L1MC,L1PA2,LTR16B1"				c6p71894350FS	TTTTGGTTCATCACTATGACATTC	c6p71894350ES	AACAATGAGATCACATGGATACAG
chr6	72924579	72924902	72867858	72868181	-	329	323	12	L1PA4	"COLO2T,COLO2N"	213	277	"L1MEg,L1PA4"		RIMS1		c6p72924740FS	TTCCCATTTTATTACTTCTTTTGG	c6p72924740ES	CATAAAAATGATGAGTTCATGTCC
chr6	73342520	73342754	73285799	73286033	+	10	234	3	L1PA2	COLO2T	0	0	"L1MC1,L1PA2"				c6p73342637FS	ATAAGATGCTGCCAAACTATCTTC	c6p73342637ES	TCATTCTCAGTAAACTATCGCAAG
chr6	73754942	73755059	73698221	73698338	-	106332	117	13	L1HS	"COLO2T,COLO2N"	119465	482	L1PA16		KCNQ5		c6p73755000FS	AATGTGTACAGATGACCTTTGTTG	c6p73755000ES	GATGAGTTCATATCCTTTGTAGGG
chr6	74051252	74052148	73994531	73995427	-	31624	896	72	L1HS	"COLO2T,COLO2N"	27532	878	"AluSx1,L1HS,AluSq2"	LINE:Iskow	"AK090984,AL832252,KHDC1"		c6p74051700FS	CCTGTGAAGTTTTGTGTCTGTTAC	c6p74051700ES	CAATATGCACATGTACCCTAAAAC
chr6	74350476	74350696	74293755	74293975	+	20	220	4	noL1	"COLO2T,COLO2N"	23	218	"T-rich,FLAM_C"				c6p74350586FS	TTTGTATTTTTAGTAGAGACGGGG	c6p74350586ES	GTTTAGTGTGCATTTCTTTTCTCC
chr6	74792988	74793241	74736268	74736521	-	55	253	2	L1PA5	"COLO2T,COLO2N"	24	253	"MER115,L2b"				c6p74793114FS	AAGGTAGAATTCTGAATCATCTGG	c6p74793114ES	ATGATGAGTTCATGTCCTTTGTAG
chr6	74921929	74922226	74865209	74865506	-	3753	297	9	L1HS	"COLO2T,COLO2N"	4185	466	L1HS	LINE:dbRIP	AF086303		c6p74922077FS	AATTAATGACCAGTCCAAAGGTAG	c6p74922077ES	TCATTCTCAGTAAACTATCGCAAG
chr6	74991841	74992349	74935121	74935629	-	8749	508	18	noL1	"COLO2T,COLO2N"	3733	511	L1MD1	LINE:Ewing	AF086303		c6p74992095FS	TTACCCTTTTGATGTATCCAAGTC	c6p74992095ES	GAGCTGCAAAATAGGTAAAGAAAC
chr6	75280385	75280607	75223665	75223887	+	27	222	3	L1PA2	"COLO2T,COLO2N"	10	211	L1MA6		AF086303		c6p75280496FS	TATGCCACATGAAGTATGTGTATG	c6p75280496ES	TCATTCTCAGTAAACTATCGCAAG
chr6	77436548	77436650	77379829	77379931	-	52238	102	22	noL1	"COLO2T,COLO2N"	43172	122		"LINE:Ewing,Iskow,Stewart"			c6p77436599FS	TTTCCTCATGTCAATCACAGATAC	c6p77436599ES	AGTTTTAGCCAATGAGACATAAGG
chr6	77823796	77824106	77767077	77767387	+	48	310	5	L1PA4	"COLO2T,COLO2N"	40	86	"L1PA4,L1M5"				c6p77823951FS	ACATTTTAATCAACTGAATGCAAC	c6p77823951ES	ATGATGAGTTCATGTCCTTTGTAG
chr6	77848794	77849193	77792075	77792474	-	99	399	9	L1PA2	"COLO2T,COLO2N"	25	471	"L1PA2,(T)n"				c6p77848993FS	CTTAGTGAGTTTACTGCGAACAAG	c6p77848993ES	CGTATGTTTATTGTGGCATTATTC
chr6	78037058	78037402	77980339	77980683	-	3919	344	19	noL1	"COLO2T,COLO2N"	7829	272	"L2c,L2"	"LINE:dbRIP,Ewing,Iskow,Stewart"			c6p78037230FS	AAGTGTCAAGATGAAATATGGCTC	c6p78037230ES	ATATGTTCAAAATCCTGTGATCTG
chr6	78706208	78706436	78649489	78649717	-	6501	228	18	noL1	"COLO2T,COLO2N"	4196	214	MLT1N2	LINE:Iskow			c6p78706322FS	GAAACACTCTGAATTTTGGATACC	c6p78706322ES	ATACTGTGATTGATAAAACTCCCC
chr6	78757148	78757493	78700429	78700774	-	45	345	3	L1PA4	"COLO2T,COLO2N"	35	483	MLT1K				c6p78757320FS	CTTTATTTCCCTTTCCTTTCTCTC	c6p78757320ES	AACAGCACATGTTCTCACTCATAG
chr6	81620171	81620367	81563452	81563648	+	450	196	9	L1PA3	"COLO2T,COLO2N"	590	198	"L1PA3,L1M3e"				c6p81620269FS	TTTTTAGTAGAAATGGGGATTCAC	c6p81620269ES	GACTGGATTAAGAAAATATGGCAG
chr6	81677993	81678521	81621274	81621802	-	16	528	3	L1PA3	"COLO2T,COLO2N"	10	524	"L1PA3,L1MEc"				c6p81678257FS	TATAGTCCTTGCTAGAACCTCCAG	c6p81678257ES	TTCACAATAGCAAATACTTGGAAC
chr6	81682702	81683156	81625983	81626437	-	47	454	10	L1PA3	"COLO2T,COLO2N"	268	104	"L1ME4a,L1PA3"				c6p81682929FS	ATCCTTGACCTAAAATAAATCACG	c6p81682929ES	AAAAACCAAACACCACATATTCTC
chr6	81990045	81990182	81933326	81933463	+	28	137	3	L1PA4	COLO2T	0	0	"(TAA)n,L2b"				c6p81990113FS	ATAATTCACCACAGCCTCTAACTC	c6p81990113ES	TTGAAAGGCATAGGTAAGATTAGG
chr6	82167657	82168176	82110938	82111457	+	5131	519	28	L1PA2	"COLO2T,COLO2N"	10949	520	"L1PA2,L1PA5"				c6p82167916FS	AAGCAGGTTCATCTATCCTATCAG	c6p82167916ES	TCATTCTCAGTAAACTATCGCAAG
chr6	82240640	82240847	82183921	82184128	+	24	207	5	L1PA3	"COLO2T,COLO2N"	11	89	L2				c6p82240743FS	CTCATCATTATATAACCCTGGACC	c6p82240743ES	ATGATGAGTTCATGTCCTTTGTAG
chr6	83623566	83623732	83566847	83567013	+	10	166	2	L1PA4	"COLO2T,COLO2N"	4	65	L1MA3				c6p83623649FS	AACTAATATGTAAGTTGGGAGGGG	c6p83623649ES	ATGATGAGTTCATGACCTTTGTAG
chr6	84106360	84106581	84049641	84049862	+	22821	221	23	L1HS	"COLO2T,COLO2N"	25608	448	"L1HS,L1MD"		ME1		c6p84106470FS	AAATCTATTCAAACCATTAGCTGC	c6p84106470ES	CAAATGTCCAACAATGATAGACTG
chr6	85380850	85380987	85324131	85324268	+	1276	137	13	L1HS	"COLO2T,COLO2N"	60	94	"L1HS,AT_rich"	LINE:dbRIP			c6p85380918FS	TTTCTTGAGTAAGGTATGGAAAGC	c6p85380918ES	TCATTCTCAGTAAACTATCGCAAG
chr6	86079740	86080212	86023021	86023493	+	111	472	5	L1PA3	"COLO2T,COLO2N"	44	479	"L1MA1,(A)n"				c6p86079976FS	GAGCTAAAGAGCATGTACTAACCC	c6p86079976ES	TAATGCTAAATGACGAGTTAATGG
chr6	86484441	86484711	86427722	86427992	+	393	270	8	L1PA3	"COLO2T,COLO2N"	475	270	"L1PA3,MER57A-int"				c6p86484576FS	TTTACCTTGAATCTTGGATCTCTC	c6p86484576ES	CAAATGTCCAACAATGATAGACTG
chr6	86699609	86699844	86642890	86643125	-	33	235	2	noL1	"COLO2T,COLO2N"	21	235	L1PA4				c6p86699726FS	GATAAACTTTTTGATGTGTTGCTG	c6p86699726ES	ATGAAGGCAGAAATAAAGATGTTC
chr6	87070081	87070224	87013362	87013505	-	22	143	2	L1PA4	"COLO2T,COLO2N"	8	139	"L1PA4,L1PA7"				c6p87070152FS	GTAGTTGTGTGGTTTTTGAGTGAG	c6p87070152ES	AAATGTTCAACAATGATAGACTGG
chr6	87176311	87176599	87119592	87119880	-	13	288	2	L1PA5	"COLO2T,COLO2N"	12	70	L1PA5				c6p87176455FS	GACATAAGGAGCTGGTAAATATGG	c6p87176455ES	TGGGTCAAATGGTATTTCTAGTTC
chr6	87411235	87411641	87354516	87354922	-	22	406	10	L1HS	"COLO2T,COLO2N"	29	330	"L1HS,(T)n"				c6p87411438FS	GCTCAGCAGTTCTATGAAGTTTTAG	c6p87411438ES	AACCATCATTCTCAGCAAACTATC
chr6	87503624	87504475	87446905	87447756	+	4929	851	19	L1PA3	"COLO2T,COLO2N"	7254	1127	"L1PA3,L1PA5,L1PA4"				c6p87504049FS	ATAAAACTGAGCCTAACCTCAAAC	c6p87504049ES	TGCTATATGACAAGTTAATGGGTG
chr6	87573043	87573153	87516324	87516434	-	204	110	12	L1PA2	"COLO2T,COLO2N"	313	114	"L1PA2,L1PA7"				c6p87573098FS	ATCTTGTTATTGGTCTATTCAGGG	c6p87573098ES	ACATGCACATGTATGTTTATTGTG
chr6	87790329	87790744	87733610	87734025	+	3198	415	8	noL1	COLO2T	0	0	(CA)n				c6p87790536FS	TTATCTTCAGCATGATTATTGAGG	c6p87790536ES	TCATATGGGCTATCATATTTTTCC
chr6	88610746	88611187	88554027	88554468	+	1134	441	11	noL1	"COLO2T,COLO2N"	1080	443	"AluY,L1MC5"		AY927641		c6p88610966FS	GACACAGCAGATATTATAGGGCTC	c6p88610966ES	TTTTAGTAGAGACTGGGTTTCACC
chr6	91394640	91394767	91337919	91338046	+	11	127	2	L1PA7	"COLO2T,COLO2N"	1	65	L1PA7				c6p91394703FS	ATGCCTATGTCCTAAATGGTATTG	c6p91394703ES	TGGAAATCATCATTCTCAGTAAAC
chr6	91725907	91726281	91669186	91669560	-	41	374	11	L1PA13	"COLO2T,COLO2N"	90	472	"L1PA13,AT_rich,L1MEc"	"LINE:Ewing,Iskow"			c6p91726094FS	TTTTTCAAACTTTTAAGTTCAGGG	c6p91726094ES	AAGACAGAGGAAAGCATGAATATC
chr6	92329441	92329667	92272720	92272946	+	76	226	3	L1PA16	"COLO2T,COLO2N"	2	65	L1PA16				c6p92329554FS	TCTTTAGGAATGCTGAAAATATCC	c6p92329554ES	AAACCGCGTCTCTACTAAAAATAC
chr6	93724036	93724481	93667315	93667760	+	11	445	2	noL1	"COLO2T,COLO2N"	7	65	L1PA4				c6p93724258FS	CTATGTTGAATGTACTCCTTGCTG	c6p93724258ES	ATTAAAAAGTCAGGAAACAACAGG
chr6	94631752	94632241	94575031	94575520	-	50	489	8	L1HS	"COLO2T,COLO2N"	118	395	L1HS				c6p94631996FS	TTCGCATACCAGTAAATATGAAAC	c6p94631996ES	TCATTCTCAGTAAACTATCGCAAG
chr6	94964150	94964514	94907429	94907793	-	10032	364	29	L1HS	"COLO2T,COLO2N"	6547	455	L1HS				c6p94964332FS	AAAAACGAGGAGACATTTATTGAC	c6p94964332ES	ATGATGAGTTCATGTCCTTTGTAG
chr6	96222348	96222640	96115627	96115919	+	178	292	11	L1PA2	"COLO2T,COLO2N"	120	412	"L1PA2,(A)n"				c6p96222494FS	CAAGTGAGAGACAAACACTATTGG	c6p96222494ES	TGGAAATCATCATTCTCAGTAAAC
chr6	97743810	97744200	97637089	97637479	+	36	390	6	noL1	"COLO2T,COLO2N"	22	67	"AT_rich,AluSx3"		C6orf167		c6p97744005FS	TAGGTTCTGGTTTAAAATAGCAGG	c6p97744005ES	ATTTCAGAAAGCTTAAGAAAAGGG
chr6	97956540	97956813	97849819	97850092	-	21	273	9	L1PA4	"COLO2T,COLO2N"	15	70	"Tigger2,L1PA4"		AK091365		c6p97956676FS	GACTTTCCTGGCTTCTTATGTAAC	c6p97956676ES	CAAATGTCCAACAATGATAGACTG
chr6	98134760	98135375	98028039	98028654	-	66622	615	78	L1HS	"COLO2T,COLO2N"	97864	423	"MamRep605,MER102a,L1HS"		AK091365		c6p98135067FS	CCTGTGTTTTAGAATCAGACTGTG	c6p98135067ES	AAGCATATTCTCACTCATAGGTGG
chr6	99705108	99705955	99598387	99599234	-	18	847	3	noL1	"COLO2T,COLO2N"	18	65	(T)n				c6p99705531FS	GAACAACTACATTCAAACATCAGC	c6p99705531ES	TTAGTGTTAGGTAAAAGCCTTTGG
chr6	100449475	100449873	100342754	100343152	-	653776	398	132	L1HS	"COLO2T,COLO2N"	428939	396	"HAL1,L1HS"				c6p100449674FS	TCCATCTCCCTTTTAGTTAGAGTG	c6p100449674ES	CCCAAAATGGTAACCTAAGTATTG
chr6	100963443	100963708	100856722	100856987	-	18	265	2	L1PA4	"COLO2T,COLO2N"	22	65	"L1MA9,L1PA4"		SIM1		c6p100963575FS	ACCATTGAGTATAATGGTAGCCTG	c6p100963575ES	AGACCCCTATGAACAATTATATGC
chr6	101632916	101633138	101526195	101526417	+	73	222	7	noL1	"COLO2T,COLO2N"	62	274	"MLT1G1,L2a"				c6p101633027FS	GGAAACATTTAGACCATAGCAGAC	c6p101633027ES	AGAGGGAAAATACATGAGTAAACG
chr6	101740362	101740650	101633641	101633929	-	867	288	6	L1PA3	"COLO2T,COLO2N"	1250	288	"AluSx1,Tigger3b"				c6p101740506FS	TAAGTTGCTATGGGTAAGTCAGTG	c6p101740506ES	CATTCTCAGTAAACTATTGCAAGG
chr6	102390272	102390491	102283579	102283798	-	469	219	8	noL1	"COLO2T,COLO2N"	908	193	"HAL1,AluSx1"	"LINE:dbRIP,Ewing"	GRIK2		c6p102390381FS	TTTTCTATGAAAATGTCATTCCTTC	c6p102390381ES	GAAGTTTCCAAGCTTCAGAAATAG
chr6	102730214	102730314	102623521	102623621	+	197	100	10	L1PA2	"COLO2T,COLO2N"	285	119	"(TG)n,L1PA2"				c6p102730264FS	TAGTCAATGCCTTAGTATCCTGTG	c6p102730264ES	TAGACTGGATTAAGAAAATGTGGC
chr6	103134533	103134659	103027840	103027966	-	25	126	8	L1PA6	"COLO2T,COLO2N"	63	137	L1PA6				c6p103134596FS	GGGAAAATTGTTGATATTAACTGG	c6p103134596ES	GGAGAAAGCAGAAACGTAATAGAG
chr6	104111021	104111145	104004328	104004452	-	39	124	5	L1PA3	"COLO2T,COLO2N"	69	186	L1PA3				c6p104111083FS	GTTGATTTGCTATTTTGGTTCTTC	c6p104111083ES	AGAGACTGGATTAAGAAAATGTGG
chr6	104208994	104209259	104102301	104102566	-	22910	265	20	L1PA2	"COLO2T,COLO2N"	25929	442	L1PA2				c6p104209126FS	AGATTTACTATGTGTGGAATGTGG	c6p104209126ES	TCATTCTCAGTAAACTATCGCAAG
chr6	104648420	104648737	104541727	104542044	+	41	317	5	L1PA3	"COLO2T,COLO2N"	95	342	L2c				c6p104648578FS	TTTGAGTGTTCAAAATTCTACAGTG	c6p104648578ES	CTCACTCATAGATGGGAATTGAAC
chr6	104935393	104935623	104828700	104828930	+	20	230	5	L1PA4	"COLO2T,COLO2N"	2	65	"L1PA17,L1MA7"				c6p104935508FS	ATTGTTTCAGGTCAGTTCTGAGAG	c6p104935508ES	AAAAACCAAACACCACATATTCTC
chr6	106642497	106642609	106535804	106535916	-	48	112	2	noL1	"COLO2T,COLO2N"	17	65	(T)n		PRDM1		c6p106642553FS	AAGTGATTTCTAAGAGGCCGTAG	c6p106642553ES	TGTACACTTCTCTTCAAACTCAGC
chr6	106955369	106956029	106848676	106849336	-	22420	660	42	L1HS	"COLO2T,COLO2N"	25512	1043	"L2c,L1HS"				c6p106955699FS	AATGAATATGATACAATTCCTGCC	c6p106955699ES	TAATGCTAGATGACACGTTAGTGG
chr6	110583034	110583493	110476341	110476800	-	6612	459	20	L1HS	"COLO2T,COLO2N"	6856	458	"L1HS,L3"	LINE:dbRIP	WASF1		c6p110583263FS	AAGCCTGGATCTTATGTAAAGTTG	c6p110583263ES	CCATCATTCTCAGTAAACTATTGC
chr6	110610610	110610808	110503917	110504115	-	27	198	3	noL1	"COLO2T,COLO2N"	28	199	L2c		CDC40		c6p110610709FS	ATTATTTTCTTTCCCTCAAAATCC	c6p110610709ES	AGATGAACAAGTTACAGCAATGTG
chr6	113062082	113062252	112955389	112955559	+	48	170	4	L1PA3	COLO2T	0	0	"L1PA3,L2"				c6p113062167FS	AATTAAAATGTTTTGGAAGCAGAC	c6p113062167ES	TACTATGCAGCCATAAAAATGATG
chr6	113137613	113137961	113030920	113031268	+	51804	348	36	L1HS	"COLO2T,COLO2N"	63686	348	L1HS	LINE:dbRIP			c6p113137787FS	CTTAGGATTCAATGATACTTTGGG	c6p113137787ES	GATGAGTTCATATCCTTTGTAGGG
chr6	113964759	113965090	113858066	113858397	+	85	331	4	noL1	"COLO2T,COLO2N"	44	558	L1PA2				c6p113964924FS	AGACACATACACACACTCATTTCC	c6p113964924ES	AACTAGAAATACCATTTGACCCAG
chr6	114033207	114033721	113926514	113927028	-	16805	514	36	L1HS	"COLO2T,COLO2N"	22981	753	"L1HS,L2b"				c6p114033464FS	TCAATATCTTCGAGTTCAGTATCG	c6p114033464ES	TCATTCTCAGTAAACTATCGCAAG
chr6	114197776	114198234	114091083	114091541	+	884	458	5	noL1	"COLO2T,COLO2N"	13	71	"AluSx1,(T)n,FLAM_A"	LINE:Stewart			c6p114198005FS	TTTCTTAGTAGAGACAGGGTTTCG	c6p114198005ES	CATGAGATATGAGAGTGCTTTGAC
chr6	115227665	115227822	115120972	115121129	-	13	157	3	L1PA4	"COLO2T,COLO2N"	3	65	L1PA4				c6p115227743FS	CTTACGAGGAGGTCTGTAAGAAAC	c6p115227743ES	CGTATGTTTATTGTGGCACTATTC
chr6	115350869	115351025	115244176	115244332	-	15	156	2	L1PA5	COLO2T	0	0	L1PA16				c6p115350947FS	CTACTTCCGTGAAAAATAACTTGG	c6p115350947ES	TACACCATGTAATACTATGCAGCC
chr6	115457422	115457750	115350729	115351057	+	2041	328	15	noL1	"COLO2T,COLO2N"	4140	344	L1ME1	"LINE:Ewing,Iskow"			c6p115457586FS	AACTTTGTGTTGACATTTTTGTTG	c6p115457586ES	AATCTAACTGGGTTTACAGACAGC
chr6	116006371	116006763	115899678	115900070	-	10622	392	37	L1HS	"COLO2T,COLO2N"	7985	385	"L1HS,LTR85a,MamRep605,(T)n"				c6p116006567FS	AATAAATGCATGAAGGAGAAGAAG	c6p116006567ES	GATGAGTTCATATCCTTTGTAGGG
chr6	117139357	117139471	117032664	117032778	-	49	114	5	noL1	"COLO2T,COLO2N"	98	111	"(TG)n,L1MB5"		KPNA5		c6p117139414FS	TTTTGTAGAGACATGGTTTCACC	c6p117139414ES	GAGCAAGATTCTGTCTCAAAAAG
chr6	117224598	117224784	117117905	117118091	-	39	186	2	L1PA3	COLO2T	0	0	L1PA3		GPRC6A		c6p117224691FS	ATAGTCCCTTTCTCACAGCATATC	c6p117224691ES	CCTAACAATGTCTGGCTTTATCTC
chr6	117535964	117536496	117429271	117429803	+	2106	532	33	L1HS	"COLO2T,COLO2N"	1401	537	"L1HS,L1MA3,(A)n,LTR84b,(TTA)n"				c6p117536230FS	CAATTGTTTTAATTTTTAGCTCCC	c6p117536230ES	TCATTCTCAGTAAACTATCGCAAG
chr6	117678587	117678726	117571894	117572033	+	181	139	5	L1PA2	"COLO2T,COLO2N"	129	114	"L1PA2,L1ME3D"				c6p117678656FS	CTGACATATTTTTGCTGTTGAGTC	c6p117678656ES	CAAATGTCCAACAATGATAGACTG
chr6	118478212	118478581	118371519	118371888	+	2779	369	30	L1PA4	"COLO2T,COLO2N"	2941	374	"L2b,L1PA4"		SLC35F1		c6p118478396FS	ATCAGCTTAAGATGTTTTCTCCAC	c6p118478396ES	CCTTTGTAGGGACATAGATGAAAC
chr6	119420707	119421090	119379008	119379391	-	33	383	5	noL1	"COLO2T,COLO2N"	22	381	"AluSx,MLT1G3,AT_rich,HY4"		FAM184A		c6p119420898FS	TTTTAATTATTCAGGTGTGGTGG	c6p119420898ES	AGATTTAAGAGAAGGAGAATTGGG
chr6	119852067	119852230	119810368	119810531	+	51	163	2	L1PA4	"COLO2T,COLO2N"	45	173	L1PB1		AK097101		c6p119852148FS	CATTGTTTCTTTGTTGACTTTCTG	c6p119852148ES	CTACATGTTCTCACTCATAGGTGG
chr6	120865347	120866037	120823648	120824338	-	92	690	3	noL1	"COLO2T,COLO2N"	109	67	"L1M4c,AluSq2,L1PREC2"				c6p120865692FS	GATGAACTTAAGTGTGCATGTGTC	c6p120865692ES	AATACAAAAATTAACTGGGTGTGG
chr6	121186665	121187451	121144966	121145752	+	5501	786	15	L1PA3	"COLO2T,COLO2N"	6151	390	"L1PA3,L1PA4"				c6p121187058FS	CCCTACAAAGGACATTAACTCATC	c6p121187058ES	CTAGATGACAAGTTAGTGGGTGC
chr6	121531286	121531971	121489587	121490272	+	890122	685	74	L1HS	"COLO2T,COLO2N"	1409731	536	"L1HS,L1P3"		C6orf170		c6p121531628FS	TATTCTGTTCCATTGGTCTATGTG	c6p121531628ES	CAAATGTCCAACAATGATAGACTG
chr6	123251579	123251734	123209880	123210035	-	581	155	7	L1PA3	"COLO2T,COLO2N"	714	151	"L3,(TTTTTA)n"				c6p123251656FS	TAGCATCCCAATAGAAAACCTTAC	c6p123251656ES	TCATTCTCAGTAAACTATCGCAAG
chr6	123543096	123543504	123501397	123501805	-	2348	408	15	L1HS	"COLO2T,COLO2N"	2467	406	"HAL1,L1PA8,L1HS"				c6p123543300FS	AGCAAAATTGGAGAATAAATGAAG	c6p123543300ES	ATGATGAGTTCATGTCCTTTGTAG
chr6	123809248	123809505	123767549	123767806	+	33	257	5	L1PA3	"COLO2T,COLO2N"	54	366	"L2a,AluY"		"TRDN,AL832096"		c6p123809376FS	AACCTAATTACAATGTGAAGGGAG	c6p123809376ES	TGATGAGTTCATGTTCTTTGTAGG
chr6	123895308	123895644	123853609	123853945	-	20972	336	26	noL1	"COLO2T,COLO2N"	20071	344	"MER33,MLT2C1"	"LINE:Ewing,Stewart"	TRDN		c6p123895476FS	GGGTGTGATAGTTTTATTATTGGC	c6p123895476ES	ATCTCTTAAAGGCAACTCCCTTAG
chr6	124584406	124584685	124542707	124542986	+	53	279	2	L1PA3	"COLO2T,COLO2N"	47	316			"TCBA1,NKAIN2"		c6p124584545FS	TGGATTCACATTATCTATCACCAG	c6p124584545ES	AAAAACCAAACACCACATATTCTC
chr6	125204635	125205190	125162936	125163491	+	62689	555	47	L1HS	"COLO2T,COLO2N"	44353	463	"L1HS,L2"				c6p125204912FS	AAAAGCTATCAAAGATGAGGTCAG	c6p125204912ES	ACACCGCATATTCTCACTCATAG
chr6	125652285	125652885	125610586	125611186	+	1228	600	20	L1HS	"COLO2T,COLO2N"	1773	448	"L1HS,(CAAAA)n"	LINE:dbRIP	"NS5ATP2,HDDC2"		c6p125652585FS	TGGTTTTTGGTTTAAGAAAGTAGG	c6p125652585ES	ACACTGCATATTCTCACTCATAGG
chr6	125684871	125685462	125643172	125643763	+	124820	591	40	L1HS	"COLO2T,COLO2N"	127743	592	"L1HS,AT_rich,FRAM"				c6p125685166FS	ACTTGTCCTCTTGGAGTTTCATAG	c6p125685166ES	TAATGCTAGATGACACGTTAGTGG
chr6	125733797	125734345	125692098	125692646	-	1587	548	17	L1HS	"COLO2T,COLO2N"	1236	334	L1HS	"LINE:Ewing,Iskow"			c6p125734071FS	ATCTACCCTTGAGACTGCTAAGTG	c6p125734071ES	CTAATGATAGATGACACGTTGGTG
chr6	125959847	125960229	125918148	125918530	+	12	382	3	noL1	"COLO2T,COLO2N"	4	382	(A)n				c6p125960038FS	AACACTTGGGTTAAGTTTCTATCG	c6p125960038ES	GTTGTTTTGTGAGATCAAGCATAG
chr6	127981103	127981615	127939410	127939922	+	230	512	6	L1HS	"COLO2T,COLO2N"	105	513	L1HS	LINE:dbRIP			c6p127981359FS	TCCACATCAGTTTATGAGTTATGG	c6p127981359ES	TAGACTGGATTAAGAAAATGTGGC
chr6	129367201	129367350	129325508	129325657	+	1720	149	7	L1HS	"COLO2T,COLO2N"	2	65	L1HS	LINE:dbRIP	LAMA2		c6p129367275FS	CAAGATGAAATAGTGTCAACAAGC	c6p129367275ES	GATGAGTTCATATCCTTTGTAGGG
chr6	131032361	131032968	130990668	130991275	+	13	607	4	noL1	"COLO2T,COLO2N"	14	607	"L4,L1MA4"				c6p131032664FS	AACGATTTCTTATAATGCCTTCAG	c6p131032664ES	CAGTATGCACAATAGCCAAGATAC
chr6	132410657	132410963	132368964	132369270	-	17	306	5	noL1	"COLO2T,COLO2N"	20	73	"L2b,(T)n,L1M4"				c6p132410810FS	GTCAAGGAAACTTTTATATTTGGC	c6p132410810ES	ATTAGCTCTAGTGGCCTTGTTATG
chr6	132427290	132427564	132385597	132385871	+	7799	274	15	noL1	COLO2T	0	0					c6p132427427FS	CTAATCACTCCACTCAGCAAATAC	c6p132427427ES	GGGTAAGACACTTCTTTGAAACTC
chr6	133383170	133383587	133341477	133341894	-	385523	417	97	L1HS	"COLO2T,COLO2N"	352494	419	"L1ME3B,L1HS"	LINE:dbRIP			c6p133383378FS	TGTGATTCTCATTTTAATCCATTG	c6p133383378ES	TCATTCTCAGTAAACTATCGCAAG
chr6	133504070	133505188	133462377	133463495	-	201	1118	13	L1PA3	"COLO2T,COLO2N"	286	1114	"THE1B,L1PA3"				c6p133504629FS	AAGACCTAATAATTGAGTGCTTGG	c6p133504629ES	TGGGAGATATACCTAATGCTAGATG
chr6	136754356	136754684	136712663	136712991	+	9927	328	24	L1HS	"COLO2T,COLO2N"	14296	588	"L2a,L1HS,MIR,(CAA)n"		"MAP,MAP7"		c6p136754520FS	ATGCAGAGCAGTAAGTGTACTTTG	c6p136754520ES	GATGAGTTCATATCCTTTGTAGGG
chr6	136973376	136973540	136931683	136931847	+	39	164	10	noL1	"COLO2T,COLO2N"	46	163	AT_rich		MAP3K5		c6p136973458FS	GTGGTGTGATCACCTATCACTG	c6p136973458ES	ACTAAATGGAGATCAGGTTTGAAG
chr6	137213526	137213883	137171833	137172190	-	352	357	22	L1HS	"COLO2T,COLO2N"	447	379	"T-rich,L1HS,L2,(T)n"		PEX7		c6p137213704FS	GTTATGTGTGAATTTGATCCTGTC	c6p137213704ES	TCATTCTCAGTAAACTATCGCAAG
chr6	142338596	142338835	142296903	142297142	+	11	239	2	L1PA3	"COLO2T,COLO2N"	40	245	"(A)n,LTR8A"		AK097143		c6p142338715FS	GAGGCATTTCATTAATTTTGAATC	c6p142338715ES	TCATTCTCAGTAAACTATCGCAAG
chr6	142491386	142491771	142449693	142450078	-	332676	385	42	noL1	"COLO2T,COLO2N"	377866	401	L1MA9	"LINE:dbRIP,Ewing,Iskow"			c6p142491578FS	TATTTATAGCAATGCATGAACAGG	c6p142491578ES	TCTTGGTGTCCTAAAACTTCTTTC
chr6	142784873	142785050	142743180	142743357	-	12	177	4	L1PA2	"COLO2T,COLO2N"	6	294	L1PA2		GPR126		c6p142784961FS	TTCAGTAACCTTCAACAGCTACAG	c6p142784961ES	TCATTCTCAGTAAACTATCGCAAG
chr6	145542429	145542598	145500736	145500905	-	1026	169	5	noL1	"COLO2T,COLO2N"	2831	180	L1PA8				c6p145542513FS	GAAGCACACACAAGTATCAATAGC	c6p145542513ES	ATTGATTTGTGTATGTTGAACCAG
chr6	145868030	145868382	145826337	145826689	+	108	352	4	L1PA2	"COLO2T,COLO2N"	132	162	"(CA)n,L1PA2,L1MC4"				c6p145868206FS	CAGAAACATTTAATCTTGGTGATG	c6p145868206ES	TCATTCTCAGTAAACTATCGCAAG
chr6	146030945	146031099	145989252	145989406	+	17	154	3	L1PA2	"COLO2T,COLO2N"	5	130	L1PA2		EPM2A		c6p146031022FS	ATCTTCACAAGACAGGGTCTCTAC	c6p146031022ES	CAAATGTCCAACAATGATAGACTG
chr6	148237502	148237733	148195809	148196040	+	21	231	4	noL1	"COLO2T,COLO2N"	2620	91					c6p148237617FS	AGTAAAACTGGGCATTCTAATCAC	c6p148237617ES	AAATTGAAGCTTTTGTATGAGGAC
chr6	149187082	149187559	149145389	149145866	-	1446	477	19	L1HS	"COLO2T,COLO2N"	547	1170	L1HS	LINE:Iskow	UST		c6p149187320FS	CAGAAAAAGCTGAAATAGAGGAAG	c6p149187320ES	TCATTCTCAGTAAACTATCGCAAG
chr6	150823453	150823660	150781760	150781967	-	12	207	2	L1PA6	"COLO2T,COLO2N"	1	65	"MIR,L1PA6"				c6p150823556FS	CATAGCACCTGTAGCCAGGAC	c6p150823556ES	CATTCTGAGCTAACTATCACAAGG
chr6	152211253	152211586	152169560	152169893	+	77	333	8	L1PA2	"COLO2T,COLO2N"	13	317	"L2a,L1PA2"		ESR1		c6p152211419FS	AAATAAAAATAAAAGCTGGTGTGC	c6p152211419ES	ATGATGAGTTCATGTCCTTTGTAG
chr6	152881949	152882241	152840256	152840548	+	3288	292	10	L1PA4	"COLO2T,COLO2N"	3785	318	"L1PA4,L1MC4a"		"SYNE1,KIAA1756"		c6p152882095FS	TTCTGTAAGAAAAAGATGTCCTCC	c6p152882095ES	TCTGAACTAATGTTTTACCCACAC
chr6	153071414	153071730	153029721	153030037	-	4620	316	10	L1HS	"COLO2T,COLO2N"	2212	325	"L1MEf,L1HS"	LINE:dbRIP	"MTLC,MYCT1"		c6p153071572FS	AATTATACTTTCCAGTTGTTTGCTG	c6p153071572ES	GATGAGTTCATATCCTTTGTAGGG
chr6	153330531	153330930	153288838	153289237	-	24	399	3	noL1	"COLO2T,COLO2N"	10	399	L1PA7				c6p153330730FS	TATGTCCTGAATGGTATTGCATAG	c6p153330730ES	AAAGAGGAAGTCAAATTGTCTCTG
chr6	153646708	153646934	153605015	153605241	-	11	226	6	L1PA4	"COLO2T,COLO2N"	17	249	"AluY,L1PA4"				c6p153646821FS	GTTTAAGAATGAATGAGTGAAGGG	c6p153646821ES	TAGACTGGATTAAGAAGATGTGGC
chr6	153758996	153759146	153717303	153717453	-	90	150	6	L1PA3	"COLO2T,COLO2N"	156	174	"L1PA3,(TTTC)n,(TTTTC)n"				c6p153759071FS	GGGATCACAAGTATTAGAATCCAG	c6p153759071ES	TCATTCTCAGTAAACTATCGCAAG
chr6	154636532	154636946	154594840	154595254	-	23	414	6	noL1	"COLO2T,COLO2N"	43	422	"(T)n,AluY"		PIP3-E		c6p154636739FS	TGTTACATGATAGTCCATCACAGC	c6p154636739ES	ATCTGTCAATTCATCATCAAAGTG
chr6	156402936	156403549	156361244	156361857	+	10041	613	21	L1HS	"COLO2T,COLO2N"	14093	491	"L1HS,L1MEc"				c6p156403242FS	TCTGTTTTTGTACTTTCTCATTGG	c6p156403242ES	TAATGCTAGATGACACGTTAGTGG
chr6	156687339	156687854	156645647	156646162	-	556126	515	73	L1HS	"COLO2T,COLO2N"	763504	558	"L1HS,L1MA4"				c6p156687596FS	ATTGTATTGCAGTCTATCTTTCCC	c6p156687596ES	TCATTCTCAGTAAACTATCGCAAG
chr6	156846458	156846616	156804766	156804924	+	24	158	3	L1PA3	"COLO2T,COLO2N"	14	157	"L1PA3,AT_rich,MER101-int"				c6p156846537FS	GTTAACACAGTGAAACCTTGTCTC	c6p156846537ES	GATGAGTTTATGTCCTTTGTAGGG
chr6	158713137	158713252	158793149	158793264	-	10	115	6	noL1	"COLO2T,COLO2N"	22	77	T-rich		TULP4		c6p158713194FS	ATCTGCATAGGTTCAGAGTAGAGG	c6p158713194ES	GCCTTTCCAATTATCTCACACTAC
chr6	158767977	158768543	158847989	158848555	-	772	566	4	noL1	"COLO2T,COLO2N"	596	67	"AluSc,L1PREC2,L1ME1,L1M5"		TULP4		c6p158768260FS	GTAAACTGTTTTGGGTAGTATGGC	c6p158768260ES	TAAAAATACAAAAATTAGCTGGGC
chr6	159018546	159018921	159098558	159098933	+	24	375	4	L1PA4	"COLO2T,COLO2N"	29	269	"AluJo,AluSx,L1PA4"		SYTL3		c6p159018733FS	CCCTACCAAAAATACAAAAATCAG	c6p159018733ES	AACCATCATTCTCAGCAAACTATC
chr6	159887851	159888297	159967861	159968307	-	163791	446	60	L1HS	"COLO2T,COLO2N"	146313	419	"L1HS,L1MA3"				c6p159888074FS	TAAGATAAGCCTAATCCAAGCAAC	c6p159888074ES	TCATTCTCAGTAAACTATCGCAAG
chr6	160204860	160205071	160284870	160285081	-	98	211	5	L1PA4	"COLO2T,COLO2N"	86	211	"AT_rich,L1PA4"				c6p160204965FS	TTATTTATTTAGAGACGGGGTCTG	c6p160204965ES	TAGACTGGATTAAGAAAATGTGGC
chr6	160441734	160441837	160521744	160521847	-	1613	103	12	noL1	"COLO2T,COLO2N"	1428	102	"AluSx,(T)n"		IGF2R		c6p160441785FS	TGAAAGAAAGCTGCAGTAGTTATG	c6p160441785ES	TTCTACCTTTGATTTCTTCTTTGG
chr6	160749566	160750095	160829576	160830105	-	92180	529	60	L1HS	"COLO2T,COLO2N"	90753	528	L1HS	LINE:Iskow	SLC22A3	SLC22A3.3	c6p160749830FS	AAATAATCATCACTGAAGCTTTCC	c6p160749830ES	TTCTCAGTAAACTATCGCAAGAAC
chr6	161696057	161696396	161776067	161776406	-	118	339	4	noL1	"COLO2T,COLO2N"	170	138	L2c		"parkin,PARK2"		c6p161696226FS	ATAAGCTTCAAGTCTCAGCTTTTC	c6p161696226ES	GAGTTCAAGAATTCAGGACCAG
chr6	162101247	162101708	162181257	162181718	+	3100	461	16	noL1	"COLO2T,COLO2N"	1385	461	MER61A	"LINE:dbRIP,Ewing,Iskow,Stewart"	"parkin,PARK2"		c6p162101477FS	TTCATGCCATTGATAACAGTTTAG	c6p162101477ES	ATATACCCTTTTACCACACAGCTC
chr6	162324883	162325326	162404893	162405336	+	36040	443	31	L1HS	"COLO2T,COLO2N"	34361	440	"AluSx,L1HS,MLT1K"		"parkin,PARK2"		c6p162325104FS	AATTAAAGAATGAAAAACACAGCC	c6p162325104ES	GATGAGTTCATATCCTTTGTAGGG
chr6	165639909	165640421	165719919	165720431	+	122076	512	59	L1HS	"COLO2T,COLO2N"	75499	517	"L1HS,(A)n"		C6orf118		c6p165640165FS	AATTTTGGCAATATGTATTAACCC	c6p165640165ES	TCATTCTCAGTAAACTATCGCAAG
chr6	167669414	167669625	167749424	167749635	+	18	211	3	L1PA2	"COLO2T,COLO2N"	24	67	"L1PA2,L1MA5A"		TTLL2		c6p167669519FS	no primer	c6p167669519ES	no primer
chr7	503980	504158	537454	537632	+	66	178	10	noL1	"COLO2T,COLO2N"	202	140	L1MDa		PDGFA	PDGFA.L	c7p504069FS	CTTCCTTGTCAAAAAGAGAGAGAG	c7p504069ES	CAAAAATAAAGAATTTGGGTTCTG
chr7	2427386	2427650	2460860	2461124	-	24	264	2	noL1	"COLO2T,COLO2N"	35	265	"AluSx,AluJo,AluSz"		CHST12		c7p2427518FS	TGGAATACAGTGGTACAATCTCAG	c7p2427518ES	GCAACATAGCAAGACCCTATCTC
chr7	2539544	2539709	2573018	2573183	-	25	165	6	noL1	"COLO2T,COLO2N"	74	165	"SVA_E,(T)n"				c7p2539626FS	CTACTGAAGCAGAAGCACGAG	c7p2539626ES	CTGTGTGGATAGAAGTAGACATGG
chr7	3035653	3036475	3069127	3069949	+	19	822	6	L1PA8	"COLO2T,COLO2N"	23	639	"L1PA8,AluY"		CARD11		c7p3036064FS	TATTAATTGACCTCTCCAGTTGTG	c7p3036064ES	TATACCTATGTAACGAACCTGCAC
chr7	4257955	4258481	4291429	4291955	-	30	526	4	L1PA4	"COLO2T,COLO2N"	8	386	"MER68,L1PA4,L1MB7"		SDK1		c7p4258218FS	GAAAGGAACTTTTTACCAGTCAAG	c7p4258218ES	TATGTTTATTGCGGCACTATTTAC
chr7	4615119	4615247	4648593	4648721	+	123	128	11	L1PA4	"COLO2T,COLO2N"	92	155	"AluJb,L1PA4"				c7p4615183FS	AGGGACAAAAACAAAAACAAAAC	c7p4615183ES	CCAGCCTAATCATTCTCATTTAAC
chr7	5518227	5518471	5551701	5551945	+	10	244	5	noL1	"COLO2T,COLO2N"	12	238	"(A)n,AluY"		FBXL18		c7p5518349FS	ACCTTGGTCTTACAGAATTACAGC	c7p5518349ES	AAAAACATCTCCTACCTAGAACCC
chr7	7319032	7319204	7352507	7352679	-	10	172	3	L1PA4	"COLO2T,COLO2N"	2	65	L1ME1				c7p7319118FS	TTTTTGTACAGTGATCTTGCATTC	c7p7319118ES	TCATTCTCAGCAAACTATCTCAAG
chr7	7477225	7477440	7510700	7510915	+	2577	215	14	L1HS	"COLO2T,COLO2N"	1204	113	"L1PB1,L1HS,AT_rich"		"COL28A1,COL28"		c7p7477332FS	GGTGTATCACATTTATTGACTTGC	c7p7477332ES	GATGAGTTCATATCCTTTGTAGGG
chr7	7853171	7853405	7886646	7886880	+	65	234	4	L1HS	"COLO2T,COLO2N"	84	68	"MER81,(TA)n,L1HS"		LOC401307		c7p7853288FS	AGTAACATGCAATGAAATGAGATG	c7p7853288ES	ATGGAAGTATGGAAATTGAGTCAC
chr7	9602429	9602910	9635904	9636385	+	27132	481	28	L1HS	"COLO2T,COLO2N"	19814	473	"(TAAA)n,L1HS,THE1D-int"	LINE:dbRIP			c7p9602669FS	CTCTCTTCTCATAGCTCCACTAGG	c7p9602669ES	TCATTCTCAGTAAACTATCGCAAG
chr7	9815876	9816020	9849351	9849495	+	10	144	2	L1PA2	"COLO2T,COLO2N"	10	125	"L1PA2,A-rich"				c7p9815948FS	AGTGCATCTTCTACTCTATCCTGG	c7p9815948ES	TCATTCTCAGTAAACTATCGCAAG
chr7	11081084	11081789	11114559	11115264	-	582	705	3	noL1	"COLO2T,COLO2N"	1227	708	"MSTB,AluSx3,MSTB-int"		PHF14		c7p11081436FS	ACTCTAAGAAGTTCCAAATTGTCC	c7p11081436ES	TTGGATATATGTCTCCTCCAAATC
chr7	11432172	11432606	11465647	11466081	+	18832	434	13	L1HS	"COLO2T,COLO2N"	20024	550	L1HS		THSD7A		c7p11432389FS	CCTACCTTATTTCTCTCCCTTTTC	c7p11432389ES	ATAAAGTGGACCTGTCTCAAAGAG
chr7	11527561	11527683	11561036	11561158	-	48	122	5	L1HS	"COLO2T,COLO2N"	2065	107	L1HS		THSD7A		c7p11527622FS	CTTATAGGAAATCAGAACGCTGAC	c7p11527622ES	AGGGTACATTGAAGTTGAGGTAAC
chr7	12691686	12692098	12725161	12725573	+	14025	412	15	noL1	"COLO2T,COLO2N"	9608	589		LINE:Iskow			c7p12691892FS	GTTCTCTTTAAAACTAGCGTTTGC	c7p12691892ES	CATCCATAGAGACTCCAATATTCC
chr7	12918058	12918588	12951533	12952063	+	18	530	4	noL1	"COLO2T,COLO2N"	11	530	"(TTCC)n,AluSx,MIRc"				c7p12918323FS	GTGTGCTTGTAATCTCAGCTACTC	c7p12918323ES	ACCTGAGGTCAGGAGTTCAATAC
chr7	14294371	14294495	14327846	14327970	-	19	124	3	noL1	"COLO2T,COLO2N"	11	137	AT_rich		DGKB		c7p14294433FS	TTAATTAATAGAAGGACAGCCTGC	c7p14294433ES	AGAGTAGGAATAAGGGGTGTAAGG
chr7	15952337	15952961	15985812	15986436	+	56	624	9	L1PA2	"COLO2T,COLO2N"	43	565	"L1PA2,AluSq"				c7p15952649FS	TATTGAATCTCATAGCACACCTTC	c7p15952649ES	TAATGCTAGATGACGAGTTAGTGG
chr7	20080032	20080133	20113507	20113608	+	906	101	9	L1PA3	"COLO2T,COLO2N"	1971	109	"L1PA3,(A)n"				c7p20080082FS	AATTGGGATTTTACTCTGAATGAG	c7p20080082ES	TACCCAAAGGACTATAAATCATGC
chr7	21097334	21097475	21130809	21130950	+	45	141	3	L1PA4	"COLO2T,COLO2N"	27	173					c7p21097404FS	AAGTCACATGGCTTCTAACATTAAC	c7p21097404ES	AGGGATAGCATTAGGAGAAATACC
chr7	21182753	21182954	21216228	21216429	-	10	201	2	L1PA4	"COLO2T,COLO2N"	1	65	L1PA4				c7p21182853FS	TATTCCTAAAAATGTTTCCTGGAG	c7p21182853ES	AACTAGAAATACCATTTGACCCAG
chr7	22468212	22468416	22501687	22501891	-	53	204	2	L1PA3	"COLO2T,COLO2N"	11	78	L1PA3		MGC87042		c7p22468314FS	AAACCAGATGTAACCTATTCCAAC	c7p22468314ES	TAGACTGAATTAACAAAATGTGGC
chr7	22891994	22892472	22925469	22925947	-	10	478	3	noL1	"COLO2T,COLO2N"	4	355	"T-rich,MLT1L"				c7p22892233FS	GCTAAAAACTTTCTGTTTTTCCTG	c7p22892233ES	ATAATAGCCTTGTGGTTATGAAGG
chr7	22936443	22936626	22969918	22970101	+	61	183	10	L1PA4	"COLO2T,COLO2N"	17	188	"L1M4b,(A)n,L1PA4"				c7p22936534FS	TGTTTCTTTGATTATTTGATTTGC	c7p22936534ES	CAAATGTCCAACAATGATAGACTG
chr7	23644828	23645031	23678303	23678506	+	16	203	4	noL1	"COLO2T,COLO2N"	8	201	"SVA_E,(A)n"		CCDC126		c7p23644929FS	GTTAGCCAATTGTGAGTTTAGATG	c7p23644929ES	ATGGGAGACTTTTCATTTTGTTC
chr7	24589714	24589862	24623189	24623337	-	14	148	3	L1PA2	COLO2T	0	0	L1PA2		MPP6		c7p24589788FS	TAGTAATCTTTTGGAATGGAGGTC	c7p24589788ES	CAAATGTCCAACAATGATAGACTG
chr7	24941874	24942082	24975349	24975557	-	198	208	4	L1PA3	"COLO2T,COLO2N"	197	227	L1PA4		OSBPL3		c7p24941978FS	CATCACCACAGAGAAAACTACAAG	c7p24941978ES	GTGGATTGTGAGAGGAAAAGTTAG
chr7	25047651	25048055	25081126	25081530	-	25909	404	33	L1HS	"COLO2T,COLO2N"	23111	584	"L1HS,AluSz"	LINE:Ewing			c7p25047853FS	TTTAGACAGACTACCTCTATGGGG	c7p25047853ES	GATGAGTTCATATCCTTTGTAGGG
chr7	25657243	25657712	25690718	25691187	-	200	469	11	L1PA2	"COLO2T,COLO2N"	89	470	"L1PA2,MLT1J2"		AK057379		c7p25657477FS	CCTAGGCTTTATTTACGTATCTCG	c7p25657477ES	AATGCTGCATATTCTCACTCATAG
chr7	28749583	28750039	28783058	28783514	-	1887432	456	55	L1HS	"COLO2T,COLO2N"	696285	455	"AluJb,L1HS,MLT1C"		CREB5		c7p28749811FS	AAAAGATTTGTCTCTATCCGACTG	c7p28749811ES	TCATTCTCAGTAAACTATCGCAAG
chr7	29134326	29134890	29167801	29168365	-	16	564	5	noL1	"COLO2T,COLO2N"	20	66	"MER34B-int,(T)n,AluSz"		CPVL		c7p29134608FS	TTTTTATTTGTTATAGGGGCTCAG	c7p29134608ES	ACTCATTGTTAGCTGAAACACTTG
chr7	30451357	30452073	30484832	30485548	+	64050	716	49	L1HS	"COLO2T,COLO2N"	43436	715	"AluSx1,L1HS,L1MB2,(A)n"	LINE:dbRIP	NOD1		c7p30451715FS	TTCATACATCAGTACACCAGAAGG	c7p30451715ES	TGGGAGATATACCTAATGCTAGATG
chr7	31489919	31490394	31523394	31523869	-	38362	475	59	L1HS	"COLO2T,COLO2N"	25691	475	"L2a,L1PB1,L1HS,(T)n"	LINE:dbRIP			c7p31490156FS	ATAGCCATTCCTATGACTTGTAGC	c7p31490156ES	TCATTCTCAGTAAACTATCGCAAG
chr7	31809438	31809579	31842913	31843054	-	10	141	2	L1PA4	"COLO2T,COLO2N"	15	240	"L1PA4,(TTA)n,L1MEc"		PDE1C		c7p31809508FS	TGATTTTTCAAATATTTTTCCTCC	c7p31809508ES	TAAATGTCCAACAACGATAGACTG
chr7	32356418	32356789	32389893	32390264	-	58	371	9	L1HS	"COLO2T,COLO2N"	120	371	"(TA)n,L1HS,L1MC5"	LINE:dbRIP			c7p32356603FS	TTTGTATTCATGTGATGCTTATCC	c7p32356603ES	GATGAGTTCATATCCTTTGTAGGG
chr7	32890474	32890655	32923949	32924130	+	481	181	9	noL1	"COLO2T,COLO2N"	139	181	"AluJr,AluSq"		KBTBD2		c7p32890564FS	GCCTGTAACCTGTTCTTGTAAAC	c7p32890564ES	AGGTAAAATGAGCAAAGGTATCTG
chr7	34175364	34175692	34208839	34209167	-	2432	328	17	L1PA2	"COLO2T,COLO2N"	2074	339	L1MDa				c7p34175528FS	GATAGATTTTTGTGTGCATTTTTG	c7p34175528ES	TCATTCTCAGTAAACTATCGCAAG
chr7	34922213	34922610	34955688	34956085	+	16253	397	34	L1PA3	"COLO2T,COLO2N"	16412	397	"L1PA3,L1MEc"				c7p34922411FS	ATTTGTTCACGTTATTACCATTCC	c7p34922411ES	TGCATGTTCTCACTCATAGATAGG
chr7	36204428	36204570	36237903	36238045	+	48	142	7	noL1	"COLO2T,COLO2N"	134	150	"L1M2,Tigger3c"		EEPD1		c7p36204499FS	AAGCAGTGATCAATCAGAAATTG	c7p36204499ES	ATTCTTCCATGGAGCTGAGTAG
chr7	36559014	36559124	36592489	36592599	-	10	110	2	L1PA3	"COLO2T,COLO2N"	14	285	"L1PA3,L1PA16"		AOAH		c7p36559069FS	GAACTAATTTACATTCCCACCAAC	c7p36559069ES	CAAATGTCCAACAATGATAGACTG
chr7	37304181	37304481	37337656	37337956	-	23	300	7	L1PA2	"COLO2T,COLO2N"	17	306	L1PA2		ELMO1		c7p37304331FS	ATGACTCACTGAGGAATGACTATG	c7p37304331ES	TCATTCTCTGTAAACTATCGCAAG
chr7	39684273	39684723	39717748	39718198	+	4146	450	18	L1PA2	"COLO2T,COLO2N"	4967	450	"L2a,MLT1D,L1PA2"		RALA		c7p39684498FS	ATTTATTCTACTTGGCAAAACTGC	c7p39684498ES	TAGATTCTGGATATTAGCCCTTTG
chr7	41276912	41277355	41310387	41310830	-	5352	443	14	noL1	"COLO2T,COLO2N"	2518	443		LINE:Ewing			c7p41277133FS	TGTCAGTTGTTACCTCTCTCTTTG	c7p41277133ES	CAACTGATGAATCAAAATGCATAC
chr7	43071215	43071357	43104690	43104832	+	91	142	8	L1PA2	"COLO2T,COLO2N"	125	150	"L1PA2,(GGGA)n,A-rich"				c7p43071286FS	ATGGCATGGATTAATTACCATAAG	c7p43071286ES	TACTATGCAGCCATAAAAATGATG
chr7	43206601	43206991	43240076	43240466	+	384	390	3	noL1	COLO2T	0	0	"Charlie2a,Charlie2b"		"KIAA0322,HECW1"		c7p43206796FS	GTCTTCAAGCTGAATAACACACAC	c7p43206796ES	TGTCTCAGTTTCTGGAACATCTAC
chr7	43779085	43779252	43812560	43812727	-	150	167	10	L1PA4	"COLO2T,COLO2N"	111	166			BLVRA		c7p43779168FS	TTTTCATGCTGCTATAAAGAACTG	c7p43779168ES	TAGACTGGATTAAGAAAATGTGGC
chr7	44362508	44362679	44395983	44396154	-	10	171	2	noL1	"COLO2T,COLO2N"	2	65	L1PA14				c7p44362593FS	TTTTTGTTTTGTTTTGTTTTTGAG	c7p44362593ES	AGATAGGCCACTGCTAGACTAATG
chr7	45562072	45562402	45595547	45595877	-	22	330	3	L1PA7	"COLO2T,COLO2N"	18	647	"L1MEg,L1PA7"				c7p45562237FS	CCATTGTGTAGGAGGAATAAGTTC	c7p45562237ES	TTCTCAGCAAAGTAACACAAGAAG
chr7	45700197	45700800	45733672	45734275	+	263808	603	88	L1HS	"COLO2T,COLO2N"	293862	488	"L1HS,L1M4"		ADCY1		c7p45700498FS	CATCAGGTAAAGTACTGAAAAGGG	c7p45700498ES	GGGAGACATACCTAATGCTAGATG
chr7	46316521	46316898	46349996	46350373	-	23	377	6	noL1	"COLO2T,COLO2N"	53	371	"(CA)n,L1MEe"	"LINE:Ewing,Iskow,Stewart"			c7p46316709FS	TTTGTTCTCTCCAATATCTTCCTC	c7p46316709ES	ACATCAGAAATCAAACTTTAAGGC
chr7	46831732	46832290	46865207	46865765	+	63728	558	42	L1HS	"COLO2T,COLO2N"	62024	404	"L1MC3,L1HS,L1MDa"				c7p46832011FS	TCACTGTTAAATTTATTGGGGTTC	c7p46832011ES	TAATGCTAGATGACACGTTAGTGG
chr7	47319004	47319190	47352479	47352665	+	153	186	6	L1PA4	"COLO2T,COLO2N"	96	173	"AT_rich,L1PA4"		TNS3		c7p47319097FS	CTCTAAGCCTTTGCTAGTTCATTC	c7p47319097ES	AAAAATACAAAAATTAGCTGGGTG
chr7	48857612	48857801	48887066	48887255	+	2458	189	8	L1PA3	"COLO2T,COLO2N"	464	330	L1PA3				c7p48857706FS	CATTCTCTACAGCAGACCAAAGAG	c7p48857706ES	AATATAAGTCTCGGGAGAATGTTG
chr7	49689830	49690479	49719284	49719933	-	691	649	16	L1HS	"COLO2T,COLO2N"	666	546	"MLT1J-int,L1PA3,L1HS"	LINE:dbRIP			c7p49690154FS	CTTCAGAGTGTGTAAAAACATTGC	c7p49690154ES	TGGGAGATATACCTAATGCTAGATG
chr7	49944151	49944602	49973605	49974056	+	20	451	4	L1PA4	"COLO2T,COLO2N"	2	65	"L1ME4a,MLT1L,L1PA4"				c7p49944376FS	GGTTGAATAAGTTATGCTGTTTCC	c7p49944376ES	CTGTATGTTCTCACTCATAGGTGG
chr7	50940193	50940364	50972699	50972870	+	17	171	3	L1PA2	"COLO2T,COLO2N"	9	199	L1PA16				c7p50940278FS	CTGTTGATAGTTTCTTTTGCTGTG	c7p50940278ES	TAATGCTAGATGACGAGTTAGTGG
chr7	51000013	51000399	51032519	51032905	-	11	386	2	L1PA3	COLO2T	0	0	"L1PA3,(TTTC)n,MER51-int"				c7p51000206FS	CTCTCTCTCTCCCTCTCTCTTTTC	c7p51000206ES	TAGATTCTGGATATTAGCCCTTTG
chr7	51640226	51640550	51672732	51673056	+	205	324	14	L1PA3	"COLO2T,COLO2N"	193	361	L1PA3				c7p51640388FS	ACTACACCTGCTAAAGGAGAACAC	c7p51640388ES	TGGAAATCATCATTCTCAGTAAAC
chr7	51719163	51719437	51751669	51751943	+	17	274	4	L1PA3	"COLO2T,COLO2N"	6	341	L1PA3				c7p51719300FS	AAAATTAAAGCGACAAGTGGTAAG	c7p51719300ES	TCATTCTCAGTAAACTATCGCAAG
chr7	52756935	52757199	52789441	52789705	+	297	264	4	noL1	COLO2T	0	0	AluSx1	"LINE:Ewing,Stewart"			c7p52757067FS	TCATTTATAAAGCACAGAACAAGC	c7p52757067ES	AAGTTGGGAATTTCATGACTAGC
chr7	52959706	52959938	52992212	52992444	+	300	232	7	noL1	COLO2T	0	0	AluJb				c7p52959822FS	ATTTCATATGGAACTATGCTGATG	c7p52959822ES	CAAGTCACTTCACTTTCTGATTTG
chr7	53619677	53620012	53652183	53652518	-	148906	335	52	noL1	"COLO2T,COLO2N"	95760	335	L1M7	"LINE:Beck,Ewing,Stewart"			c7p53619844FS	TTATCCTTGATACTTCAGGAATGAG	c7p53619844ES	TATTGCAGACAATCATCTTTTCAG
chr7	54533779	54533937	54566285	54566443	-	17	158	2	L1PA4	"COLO2T,COLO2N"	4	65	"L1M4b,L1PA4"				c7p54533858FS	AGTGAAGACATTTGGGTAGAAAAG	c7p54533858ES	CAAATGTCCAACAATGATAGACTG
chr7	54645900	54646011	54678406	54678517	-	19	111	2	L1PA4	"COLO2T,COLO2N"	31	155	L1MEe				c7p54645955FS	AATATGTCCAGATTCCAATTCTTC	c7p54645955ES	ATGAAGCTGGAAACTATCATTCTC
chr7	54823212	54823312	54855718	54855818	-	22	100	2	L1PA2	"COLO2T,COLO2N"	2	65					c7p54823262FS	TCTTTGTTTTCAACATGATGCTAC	c7p54823262ES	TTCCTAGGGTAACTCTTTAGTCTCC
chr7	55514240	55514397	55546746	55546903	-	23	157	4	L1PA3	"COLO2T,COLO2N"	6	73	"L1PA3,MLT1L"		"GASP,ECOP"		c7p55514318FS	TATCTCACATACAGCCTGTCATTC	c7p55514318ES	AAATGAAAATATTCAACCATCAGG
chr7	61294254	61294673	61290312	61290731	-	16714	419	43	L1HS	"COLO2T,COLO2N"	13192	420	"L1HS,ALR/Alpha"				c7p61294463FS	AGAGTGTTTCCAAACTGCTCTATC	c7p61294463ES	TCATTCTCAGTAAACTATCGCAAG
chr7	61464265	61464720	61826830	61827285	+	91895	455	62	L1HS	"COLO2T,COLO2N"	75445	464	"L1HS,L1PA4"				c7p61464492FS	GAATTTGACAATTATGTGTCTTGG	c7p61464492ES	TCATTCTCAGTAAACTATCGCAAG
chr7	61606194	61607312	61968759	61969877	+	1285	1118	16	noL1	"COLO2T,COLO2N"	604	1460	ALR/Alpha	"Alu:Hormozdiari,Witherspoon"			c7p61606753FS	TTTCAAATCTGCTCTGTCTAAATG	c7p61606753ES	CTCTGTTTGTAAAGTCTGCAAGTG
chr7	61607760	61607971	61970325	61970536	-	753	211	8	noL1	"COLO2T,COLO2N"	991	211	ALR/Alpha	Alu:Hormozdiari			c7p61607865FS	GAAACTCTCTGTTGGTAATGTGTG	c7p61607865ES	TTCCACTCTGTCAGTTGAATACAC
chr7	61683991	61684287	62046556	62046852	+	11	296	2	noL1	"COLO2T,COLO2N"	20	296	ALR/Alpha				c7p61684139FS	AAAAGGATATCTGTGAGCATTAGG	c7p61684139ES	TCAAAAGAAAGTTTCCTCTCTGTC
chr7	61700071	61700306	62062636	62062871	-	101	235	4	L1PA3	"COLO2T,COLO2N"	108	236	"L1PA3,ALR/Alpha"				c7p61700188FS	CAAAGCAGTTTCTCACAAATTTTC	c7p61700188ES	CAAATGTCCAACAATGATAGACTG
chr7	61826152	61826295	62188717	62188860	-	24	143	2	L1PA2	"COLO2T,COLO2N"	8	65	ALR/Alpha				c7p61826223FS	TGATAACACAGTTTTTGTCCATTC	c7p61826223ES	TGGAAATCATCATTCTCAGTAAAC
chr7	62130394	62130750	62492959	62493315	+	10190	356	13	noL1	"COLO2T,COLO2N"	6833	361	"(TTTG)n,AluY,L1MEc"	"LINE:Ewing,Iskow"			c7p62130572FS	GTGTGAAAGTAATTGCAGTTTTTG	c7p62130572ES	ATGCAAGTCTTGAAAGGAATAAAC
chr7	62246263	62246692	62608828	62609257	-	5086	429	20	L1HS	"COLO2T,COLO2N"	1630	429	"L1M3,L1HS,AT_rich"	LINE:dbRIP			c7p62246477FS	AACACTGAATGGAGAATAGAGAGC	c7p62246477ES	TCATTCTCAGTAAACTATCGCAAG
chr7	64588492	64588836	64951057	64951401	+	2707	344	10	noL1	"COLO2T,COLO2N"	1268	184	"ALR/Alpha,L1PA4"				c7p64588664FS	TATATGAAAGGATATTTGGAAGCC	c7p64588664ES	AACTAGAAATACCATTTGACCCAG
chr7	65236678	65237032	65599243	65599597	-	605	354	3	noL1	"COLO2T,COLO2N"	1361	71	AT_rich		"RCP9,CRCP"	"CRCP.2,CRCP.3,RCP9.4"	c7p65236855FS	TTTTGTATTTTTGGTAGAGATGGG	c7p65236855ES	CTCAGAGAGGTCAAATACCTTTTC
chr7	65534583	65534921	65897148	65897486	+	260	338	6	L1PA2	"COLO2T,COLO2N"	90	338					c7p65534752FS	GTTTTTAATGACCAGATAAAAGGC	c7p65534752ES	TCATTCTCAGTAAACTATCGCAAG
chr7	65766186	65766530	66128751	66129095	+	13	344	4	L1PA3	"COLO2T,COLO2N"	3	165	"L2,AluSx"		RABGEF1		c7p65766358FS	AGATGAGGTCTTGCTATATTGTCC	c7p65766358ES	AAAAATAAAACTAGTGTGGGGGAG
chr7	66228201	66228461	66590766	66591026	-	1074	260	10	noL1	"COLO2T,COLO2N"	146	184	L1MC1	LINE:Ewing	TYW1		c7p66228331FS	TTTACATTAGGGTTCATTGTTGTG	c7p66228331ES	TGCAAAAGACATATCTGATAAAGG
chr7	67096815	67097295	67459380	67459860	+	1243	480	13	noL1	"COLO2T,COLO2N"	3079	787	"L1MC4,AluYc,MIRb"				c7p67097055FS	TAGCCTGTTTGCTTGTATATTGTC	c7p67097055ES	TCTCATATTTGTAAATGGCTAGATTG
chr7	67744466	67745047	68106530	68107111	+	29	581	5	noL1	"COLO2T,COLO2N"	59	585	"(A)n,L1ME1,AluJr4"				c7p67744756FS	AACTATGACACTGATCAACACCTC	c7p67744756ES	AAAAGAAAGAAGCCAAAGAGAAAC
chr7	67784448	67785108	68146512	68147172	+	85	660	8	noL1	"COLO2T,COLO2N"	167	72	"AT_rich,AluSq2,AluSz"				c7p67784778FS	AATATGGTGAAAACCCATCTTTAC	c7p67784778ES	TAAAACTCTTTAAGCCTCATCCAC
chr7	68479486	68479715	68841550	68841779	+	23	229	3	L1PA4	"COLO2T,COLO2N"	1	65					c7p68479600FS	TTCCAGGAAAGAATACAGAGAGAC	c7p68479600ES	AACACTGCATGTTCTCACTCATAG
chr7	69306270	69306488	69668334	69668552	+	39114	218	11	L1HS	"COLO2T,COLO2N"	43621	227	L1HS		AUTS2		c7p69306379FS	TTTCAAAACATAATTCTCGATCAC	c7p69306379ES	AACCATCTCTCAGTAAACTATCGC
chr7	69466322	69466670	69828386	69828734	+	153	348	8	L1HS	"COLO2T,COLO2N"	1847	345	"L1HS,AT_rich"	LINE:dbRIP	AUTS2		c7p69466496FS	ATTCCTATGATGTGTAAGGTGCTC	c7p69466496ES	GTTGGACATTTAGGATTTATCTGG
chr7	69740408	69740590	70102472	70102654	+	59602	182	18	noL1	"COLO2T,COLO2N"	3	83	MIRc		AUTS2		c7p69740499FS	AGGTAATTTCTAAAGAAAGGAGGG	c7p69740499ES	AACTTGGTAGAGCAGGACATTTAG
chr7	69826120	69826635	70188184	70188699	-	9857	515	17	noL1	"COLO2T,COLO2N"	4490	484	MIR	"LINE:dbRIP,Ewing,Iskow"	AUTS2		c7p69826377FS	ATTAGAAGAAGGATGTGGAAAGTG	c7p69826377ES	ACTCTGTCTCAAAAACCCTTCTC
chr7	69946852	69947247	70308916	70309311	+	18	395	2	noL1	"COLO2T,COLO2N"	22	395	L1PA7				c7p69947049FS	AGGCTTGCATGTTCTAAATAATTC	c7p69947049ES	AGAGAATGTGGAGAAATAGGAATG
chr7	70553565	70553913	70915629	70915977	-	85	348	7	L1PA5	"COLO2T,COLO2N"	13	73	"L1MB8,L1PA5"		WBSCR17		c7p70553739FS	GTGTACTTTTTCTTTTGTGTGTGC	c7p70553739ES	TATCCAGAAAGACATTAGACCCAG
chr7	70850307	70850494	71212371	71212558	+	199	187	12	L1HS	"COLO2T,COLO2N"	343	140	"L1HS,(A)n"				c7p70850400FS	TTCAGTCAACCTGTTTATCTGTTG	c7p70850400ES	CTTAATCCAGTCTATCATCGTTGG
chr7	71370691	71370939	71732755	71733003	-	1016	248	3	noL1	COLO2T	0	0	"AluJr,MIR"		CALN1		c7p71370815FS	AGCTTTAAAAATATCTCTCCACCC	c7p71370815ES	CTTGGTGACAAAGTGTATGAAGTC
chr7	72889531	72889758	73251595	73251822	+	11	227	5	noL1	"COLO2T,COLO2N"	17	229	"L1MEe,SVA_F"		WBSCR27		c7p72889644FS	CTGAGACAGGAGAATCACTTGAAC	c7p72889644ES	CCGTGTCTGTGTAGAAAGAAGTAG
chr7	73730009	73730556	74092073	74092620	-	34	547	3	noL1	"COLO2T,COLO2N"	50	68	"AluJb,AluSx"		GTF2I		c7p73730282FS	TACACCTGTAATCCTAGCTACTCG	c7p73730282ES	TAAACTCAAGACTGCAAAAATCAG
chr7	75173503	75173939	75335567	75336003	-	2919	436	22	L1HS	"COLO2T,COLO2N"	911	859	"L1HS,L1MB2,(T)n,L1PA6"		HIP1		c7p75173721FS	TTTTTAGTAGAGATGGGGTTTCAC	c7p75173721ES	GATGAGTTCATATCCTTTGTAGGG
chr7	75723965	75724712	75886029	75886776	-	11	747	5	noL1	"COLO2T,COLO2N"	4	748	"MER41A,(A)n,AluSp"		FLJ37078		c7p75724338FS	GACTACAAAGGGTAACTTCCTGAC	c7p75724338ES	TCCCAAAGTACTAGGATTATAGGTG
chr7	76831654	76832225	76993718	76994289	+	11	571	3	L1PA3	"COLO2T,COLO2N"	17	606	"L1PA3,MER3"		"DKFZp667B242,PION"		c7p76831939FS	AATAAAATAATTAGCCAGGCACAC	c7p76831939ES	ACCTCCATTCTAGCAAACTATCTG
chr7	77152733	77153069	77314797	77315133	-	3443	336	24	L1PA4	"COLO2T,COLO2N"	2971	344	L1PA4		BC037783		c7p77152901FS	ATTACCTGTTTTGAAGAAAAGCTG	c7p77152901ES	AATACTTAACACCTACCTGTTGCC
chr7	78334912	78335292	78496976	78497356	+	658	380	21	L1PA3	"COLO2T,COLO2N"	1617	325	L1PA3		MAGI2		c7p78335102FS	TATGTAGTAGGCATTCAGTGTTGG	c7p78335102ES	AAAAACCAAACACCACATATTCTC
chr7	80614123	80614719	80776187	80776783	+	16	596	5	L1PA8	"COLO2T,COLO2N"	60	599	"L1PA8,L1ME3B,L1PA3"				c7p80614421FS	ATCATGCTAGCCAAGAAATAAAAC	c7p80614421ES	TGTCAGATGGATAGATTGAAAAAG
chr7	80933001	80933762	81095065	81095826	-	27	761	3	L1PA11	"COLO2T,COLO2N"	97	66	L1PA3				c7p80933381FS	TAGGTATATCTCCCAATGCTATCC	c7p80933381ES	AAACTACCATCAGAGTGAATAGGC
chr7	81529593	81529844	81691657	81691908	-	293	251	7	L1PA5	"COLO2T,COLO2N"	119	288	L2c		CACNA2D1		c7p81529718FS	TTTATAAGGGCAGTTTCGTTTTAG	c7p81529718ES	AACAAATACAAAAGAAAAACCAGC
chr7	82986064	82986231	83148128	83148295	-	24	167	3	L1PA3	"COLO2T,COLO2N"	25	193	L1PA3		SEMA3E		c7p82986147FS	AAAGTTGTATAGAAATGGGCTTTG	c7p82986147ES	TCATTCTCAGTAAACTATCGCAAG
chr7	83074052	83074202	83236116	83236266	+	101	150	2	L1HS	"COLO2T,COLO2N"	198	225			SEMA3E		c7p83074127FS	AGTAAAGAACATGCTCAGTGAGTG	c7p83074127ES	TCATTCTCAGTAAACTATCGCAAG
chr7	83535744	83535923	83697808	83697987	+	53	179	2	L1PA2	"COLO2T,COLO2N"	38	78			SEMA3A		c7p83535833FS	AAGATTTACATGGTAGATTCCCAG	c7p83535833ES	ATGAGATCACATGTACACAGGAAG
chr7	84178300	84178610	84340364	84340674	+	10	310	3	L1PA2	"COLO2T,COLO2N"	3	65	"L1PA2,MLT1C,A-rich"				c7p84178455FS	ACTAATTAAGCATGTTCCATAGGC	c7p84178455ES	TGGCACATATACATCATGGAATAC
chr7	84739009	84739613	84901073	84901677	-	1052	604	15	noL1	"COLO2T,COLO2N"	393	209	"LTR16E1,MLT1K"	"LINE:Ewing,Iskow,Stewart"			c7p84739311FS	AAAAAGAGAGTTAATGGATTCGTG	c7p84739311ES	GTGAAGGTAGTTTATTTTGGGAAG
chr7	85326561	85326865	85488625	85488929	-	16	304	2	L1PA4	"COLO2T,COLO2N"	9	65					c7p85326713FS	GATTCAGAATGACAGAAAACAATG	c7p85326713ES	TTAAAAATTTTGGAGCATATTTGG
chr7	85621524	85621674	85783588	85783738	+	53	150	5	L1PA3	"COLO2T,COLO2N"	76	150					c7p85621599FS	TTCTCAAACCAAGAAAGAATAAGC	c7p85621599ES	TGGATATTAGTGTCATGAAATTGG
chr7	85673592	85673908	85835656	85835972	+	10	316	2	L1PA3	"COLO2T,COLO2N"	2	287	"MER52-int,L1PA3"				c7p85673750FS	TTTCTTTTCTTTTCCTTTCTTTCC	c7p85673750ES	AACAATGAGAACACATGGATACAG
chr7	85792311	85792603	85954375	85954667	+	710	292	10	L1HS	"COLO2T,COLO2N"	249	300	"L1HS,L1MEg"				c7p85792457FS	ATTTCTCCTTTCTGTTGCTCTATG	c7p85792457ES	AATTTATAGGCATTGGCTTAACAG
chr7	85951086	85951201	86113150	86113265	-	34	115	2	L1PA3	"COLO2T,COLO2N"	16	231	AluY				c7p85951143FS	AGCAAATCACATATCAAAGTTCTG	c7p85951143ES	ATGATGAGTTCATGTCCTTTGTAG
chr7	87929157	87929370	88091221	88091434	-	24	213	6	L1HS	"COLO2T,COLO2N"	13	213	"L1M2,MER90,L1HS"	LINE:dbRIP			c7p87929263FS	ATGAATGAACTCATGAAACATCAC	c7p87929263ES	TCATTCTCAGTAAACTATCGCAAG
chr7	88437947	88438286	88600011	88600350	+	23	339	3	noL1	"COLO2T,COLO2N"	9	311	"MER58A,L1PA4,A-rich"		ZNF804B		c7p88438116FS	ATTGAGTTTTGTCTTCTTATTGCC	c7p88438116ES	AGATTTCCTTTTGTAATTTTGCAG
chr7	89488177	89488753	89650241	89650817	+	10	576	6	noL1	"COLO2T,COLO2N"	6	574	"HAL1,MIRc"				c7p89488465FS	AGGTCTTAAAACTGTCAACCACTC	c7p89488465ES	AAATGAGGATATCAACTCTTCCTG
chr7	89542421	89543020	89704485	89705084	+	343143	599	28	L1HS	"COLO2T,COLO2N"	409396	528	"L1HS,L1PA5"				c7p89542720FS	GGTTTTCTTCTAGGGTTTTTATGG	c7p89542720ES	TAATGCTAGATGACACGTTAGTGG
chr7	90680744	90680889	90842808	90842953	-	13	145	2	L1PA4	"COLO2T,COLO2N"	18	291	MER58B				c7p90680816FS	AAGGGTTTAGAGAGGTTAAAATGG	c7p90680816ES	AACACTGCATGTTCTCACTCATAG
chr7	90979832	90980773	91141896	91142837	+	21	941	4	L1PA3	"COLO2T,COLO2N"	10	357	"L1PA3,MIRc,MIR3"				c7p90980302FS	CTACCTATTTTTAGAGGCTTGCTC	c7p90980302ES	TGGAAATCATCATTCTCAGTAAAC
chr7	92937636	92938016	93099700	93100080	-	179	380	13	L1PA3	"COLO2T,COLO2N"	400	343	(TTTTTA)n		"CALCR,HCTR-6"		c7p92937826FS	GAGCTGATAAAATCTTCAGGTAGC	c7p92937826ES	TTAAAATGCTTTTCACATTCTCAG
chr7	93254844	93254954	93416908	93417018	-	2647	110	23	L1HS	"COLO2T,COLO2N"	5002	112	L1HS	LINE:dbRIP	GNG1		c7p93254899FS	TACTGTCACCTTATCTATGCATCC	c7p93254899ES	ATGATGAGTTCATGTCCTTTGTAG
chr7	93627793	93627936	93789857	93790000	+	39	143	2	L1PA3	"COLO2T,COLO2N"	28	325	L2				c7p93627864FS	CTTTCTCTGCACAATCAACTTTTC	c7p93627864ES	TCATTCTCAGTAAACTATCGCAAG
chr7	93738634	93738848	93900698	93900912	+	3673	214	11	L1PA4	"COLO2T,COLO2N"	3826	214	L1PA4				c7p93738741FS	AATGTTTCTGTTTCTTCATGGTTC	c7p93738741ES	CATTTTCCAACAGTAGCTTGTATG
chr7	93946347	93946488	94108411	94108552	-	29	141	2	L1PA4	"COLO2T,COLO2N"	20	304	"FRAM,(TTTC)n"				c7p93946417FS	ACTTATTAATCGAAGGACGGTATG	c7p93946417ES	TCATTCTCAGCAAACTATCACAAG
chr7	95187855	95188037	95349919	95350101	-	2294	182	7	noL1	"COLO2T,COLO2N"	19	65	LTR33C				c7p95187946FS	TTTCTTTTTCAATCGAGGTTAGAG	c7p95187946ES	AGAAACAGTCGGATTGATTATAGC
chr7	96313835	96313956	96475899	96476020	-	3362	121	23	L1HS	"COLO2T,COLO2N"	1071	358	"L1MD2,L1HS,T-rich"				c7p96313895FS	TTATGTGATGAATTCTCAATGCTC	c7p96313895ES	CTGCTATAAAGACACATGCACAC
chr7	96888041	96888529	97050105	97050593	+	10	488	4	noL1	"COLO2T,COLO2N"	1	65	(GA)n				c7p96888285FS	TAATGACTCACAGAGCTTTACACC	c7p96888285ES	TATCACAAATGCTCAAAACATCTC
chr7	97086882	97087561	97248946	97249625	+	5661	679	24	L1HS	"COLO2T,COLO2N"	2757	500	"(TAAAAA)n,L1HS,(A)n,AluSx1"				c7p97087221FS	GTTTAGTTGTTGCTGTTGTTTTTC	c7p97087221ES	TAATGCTAGATGACACGTTAGTGG
chr7	97557025	97557393	97719089	97719457	+	16	368	5	noL1	"COLO2T,COLO2N"	2	366	"AluSg,FLAM_C,(T)n"				c7p97557209FS	CTGGCTCATTTTAACATTTCTTTC	c7p97557209ES	CTGTGAGACAAGAAGTTTCTGTTG
chr7	98628098	98628562	98790162	98790626	+	13	464	5	noL1	"COLO2T,COLO2N"	8	74	"AluJr,AT_rich"		KPNA7		c7p98628330FS	AGACTTCCAGAATTTAGTACGTGG	c7p98628330ES	AATGATACTCAGTCCTAAGCCTTG
chr7	99250744	99250891	99412808	99412955	+	23	147	4	L1PA2	"COLO2T,COLO2N"	7	69	"LTR71A,L1PA2,AT_rich"				c7p99250817FS	GAGGATAAGAAAGAGAGAGGGAAG	c7p99250817ES	CAAATGTCCAACAATGATAGACTG
chr7	100750260	100750625	100963540	100963905	-	11	365	3	noL1	"COLO2T,COLO2N"	18	71	"AluY,(T)n"		"RABL5,DKFZp761N0823"		c7p100750442FS	TTTAGATGGAGTTTCGCTCTTG	c7p100750442ES	TAGAGACAGGATCTTGCTATGTTG
chr7	101689691	101690115	101902971	101903395	+	19	424	5	noL1	"COLO2T,COLO2N"	9	425	"AluJo,A-rich"		CUX1		c7p101689903FS	AACATGGTGAAACCCCTTCTC	c7p101689903ES	GAAACCCCGTCTCTACTAAAAATAC
chr7	103175184	103175392	103387948	103388156	+	45	208	2	L1PA4	"COLO2T,COLO2N"	3	172	(T)n		RELN		c7p103175288FS	ACAAATACAAAATGTGACTGTTCG	c7p103175288ES	AACCATCATTCTCAGCAAACTATC
chr7	103546605	103546772	103759369	103759536	-	136	167	4	L1PA4	"COLO2T,COLO2N"	128	122	L2				c7p103546688FS	AAGATCACTAATCCATTCATGAGG	c7p103546688ES	AACACCACATGTTCTCACTCATAG
chr7	103662632	103663262	103875396	103876026	-	533	630	9	L1PA4	"COLO2T,COLO2N"	931	602	"Tigger6b,L1ME1,L1PA4"				c7p103662947FS	CATTTCAGAATTTCCTAGTCCTTG	c7p103662947ES	TAAGTGTCCAACAACGATAGACTG
chr7	103867839	103868042	104080603	104080806	+	43	203	2	L1PA3	"COLO2T,COLO2N"	6	65	"L1PA3,L1PA5"	"Alu:dbRIP,Stewart"	LHFPL3		c7p103867940FS	TCATCAAACTTTACTTCCCCTTAG	c7p103867940ES	AAAACATAAAAATTGGCAAGAAAG
chr7	104256689	104257071	104469453	104469835	-	32	382	4	L1PA4	"COLO2T,COLO2N"	33	372	"L1PA4,AluSz"		LHFPL3		c7p104256880FS	GGAAGGTAAGAGGGAAATAAAGAG	c7p104256880ES	AACACCACATGTTCTCACTCATAG
chr7	104267987	104268207	104480751	104480971	-	20	220	2	noL1	"COLO2T,COLO2N"	19	65	AluJb		LHFPL3		c7p104268097FS	ACTTGTCCTCTGAGTTTTTGTTTC	c7p104268097ES	TGAACTGTGGTCTCATTCATTTAG
chr7	105408265	105408372	105621029	105621136	-	38	107	12	L1HS	"COLO2T,COLO2N"	26	109	"L1HS,(T)n"		"CDH28,FLJ23834"		c7p105408318FS	CAAGATATAACTTAACGGCAATCC	c7p105408318ES	ATCAAATATGTTTGGTCCTGTTTC
chr7	105529124	105529478	105741888	105742242	+	10	354	3	noL1	"COLO2T,COLO2N"	20	742	"(C)n,AT_rich"		SYPL1		c7p105529301FS	AAAGACATCCCATTTCTTCTACAG	c7p105529301ES	GAATAGAAACTTGAAGAGGTCAGG
chr7	106162776	106163142	106375540	106375906	-	31	366	2	noL1	"COLO2T,COLO2N"	52	369	"L1M4c,AluJo"		AF086203		c7p106162959FS	CTACTGTCATTGCTTTCTGTTTTG	c7p106162959ES	GAAATTCCATTACCACTAGACCTG
chr7	106356825	106357103	106569589	106569867	-	249	278	3	L1PA4	"COLO2T,COLO2N"	178	278	"LTR89,MLT1A0"				c7p106356964FS	TTATTGATTCCTTAATTCCCAAAG	c7p106356964ES	AGGATGAGTTCATGTCCTTTGTAG
chr7	107197816	107197958	107410580	107410722	-	53	142	19	L1PA13	"COLO2T,COLO2N"	78	131	"AluJb,(TTTC)n,(T)n"	Alu:Hormozdiari	"SLC26A3,DKFZp686P10213"		c7p107197887FS	TCCAGTAGAAAGGGAGAGATTAAG	c7p107197887ES	TGATAAGTGCTAAGAGAAAAGCAG
chr7	107458965	107459068	107671729	107671832	+	32	103	4	noL1	"COLO2T,COLO2N"	22	65	AluJb		LAMB4		c7p107459016FS	GTTGTATGTTCAAACAATGGAATG	c7p107459016ES	CAGCCTGTTGTTGATTTAAAGAC
chr7	108112933	108113280	108325697	108326044	+	163	347	6	noL1	"COLO2T,COLO2N"	1327	385		"LINE:Ewing,Stewart"			c7p108113106FS	AAAGTCATTTCTGTAGGTTTCCAG	c7p108113106ES	ACTAAAAATACACAAAATTCGCTG
chr7	108195376	108195500	108408140	108408264	-	14	124	2	L1PA7	"COLO2T,COLO2N"	2	65	L1PA7				c7p108195438FS	AATAAAGGTTAGTTTAAAAGGCCC	c7p108195438ES	GAAAGAAGACAGAAATCCAAAATG
chr7	108525630	108526025	108738394	108738789	+	235132	395	32	L1HS	"COLO2T,COLO2N"	134525	395	"L1P1,L1HS,A-rich"				c7p108525827FS	AACATTAAATTTCTTTTGCTGTGC	c7p108525827ES	ATGATGAGTTCATGTCCTTTGTAG
chr7	109084391	109084972	109297155	109297736	+	10	581	3	noL1	"COLO2T,COLO2N"	12	75	"L1MEd,(A)n"				c7p109084681FS	AACAACAACCATAGTGATCCTACC	c7p109084681ES	TCAAAATATTTCCCCATATTTCAG
chr7	109335885	109336279	109548649	109549043	+	63964	394	50	L1HS	"COLO2T,COLO2N"	65147	691	"L1HS,L1PA3"				c7p109336082FS	TCTCAACTCATCAAAGTCATTCTC	c7p109336082ES	AATAATGAGATCACATGGACACAG
chr7	109342176	109342548	109554940	109555312	-	9695	372	25	L1HS	"COLO2T,COLO2N"	3857	318	"L1HS,AT_rich"				c7p109342362FS	AACATTTCTCTGAGAGTTTCAAGG	c7p109342362ES	TCATTCTCAGTAAACTATCGCAAG
chr7	109457190	109457467	109669954	109670231	-	25	277	5	L1PA4	"COLO2T,COLO2N"	14	68	"L1MA10,(TG)n,L1PA4"				c7p109457328FS	ATAGATAGGGATCTCTCATTGTGG	c7p109457328ES	AAACTGGAAACTATCATTCTCAGC
chr7	109554914	109555098	109767678	109767862	+	32	184	5	L1PA2	"COLO2T,COLO2N"	40	184	"L1PA2,LTR16D"				c7p109555006FS	GATTCTGTTACCTTTCACTTCTGG	c7p109555006ES	TCTATTCTCAAGCAGAAAGCCTAC
chr7	109865778	109865941	110078542	110078705	-	24	163	2	L1PA3	"COLO2T,COLO2N"	3	586	L1PA15				c7p109865859FS	TAATCCCATTCACTCTGGATTTAC	c7p109865859ES	CAGTCTATCATTGTTGGACATTTG
chr7	109984584	109984893	110197348	110197657	-	77	309	6	L1PA2	"COLO2T,COLO2N"	170	309	"L1PA2,L1ME2"				c7p109984738FS	CTGAGACAGGCTGTAACTGAATC	c7p109984738ES	CAAATGTCCAACAATGATAGACTG
chr7	110133791	110134346	110346555	110347110	-	476523	555	75	L1HS	"COLO2T,COLO2N"	591628	406	"L1HS,L1PA16"	LINE:dbRIP	IMMP2L		c7p110134068FS	ACTCATTTACATTACCACCAACAG	c7p110134068ES	ACACCGCATATTCTCACTCATAG
chr7	110670469	110670868	110883233	110883632	-	78	399	5	L1HS	"COLO2T,COLO2N"	40	400	"L1HS,AT_rich"	LINE:dbRIP	IMMP2L		c7p110670668FS	TGTATTTTACCAGGGAAGAAAAAG	c7p110670668ES	GATGAGTTCATATCCTTTGTAGGG
chr7	110695736	110695923	110908500	110908687	+	108	187	6	noL1	"COLO2T,COLO2N"	21	191	"AluJb,(A)n"		IMMP2L		c7p110695829FS	ACCAAGGACCAGAAAAGATAATAG	c7p110695829ES	GAATTAGACAAAAGTCTCTGTCCC
chr7	110878992	110879190	111091756	111091954	+	76	198	3	L1PA2	"COLO2T,COLO2N"	21	198	L1PA2		IMMP2L		c7p110879091FS	AAATTGCTTTACTAAACCTGATGC	c7p110879091ES	ATGATGAGTTCATGTCCTTTGTAG
chr7	111396455	111396790	111609219	111609554	+	11958	335	28	L1HS	"COLO2T,COLO2N"	9660	339	L1HS		"KIAA0716,DOCK4"		c7p111396622FS	TAATTCTTACCTCTCCTGTTTTGG	c7p111396622ES	GATGAGTTCATATCCTTTGTAGGG
chr7	112926598	112927074	113139362	113139838	+	38097	476	46	L1HS	"COLO2T,COLO2N"	50673	476	"L1HS,L2c"				c7p112926836FS	CCCTAATGAACCTTAACATTTCAC	c7p112926836ES	TCATTCTCAGTAAACTATCGCAAG
chr7	113203231	113203470	113415995	113416234	-	19	239	5	L1HS	"COLO2T,COLO2N"	9	69	"L2c,L1HS"	LINE:dbRIP			c7p113203350FS	CTCACCCTTTTGAATAACTCACTC	c7p113203350ES	GATGAGTTCATATCCTTTGTAGGG
chr7	113298513	113298837	113511277	113511601	+	938	324	11	L1PA2	"COLO2T,COLO2N"	352	155	L1MA5				c7p113298675FS	ATATGGTATTTGTCTTTCTGTGCC	c7p113298675ES	ACACTGCATATTCTCACTCATAGG
chr7	114452326	114452427	114665090	114665191	-	83	101	2	L1PA2	"COLO2T,COLO2N"	15	101	"L1PA2,(TTA)n"				c7p114452376FS	TTTATGAAAATATAAATCCTGGGG	c7p114452376ES	TCATCATTCTCAGTAAACTATCGC
chr7	114594946	114595051	114807710	114807815	-	24	105	3	L1PA3	"COLO2T,COLO2N"	16	113	L1PA15-16				c7p114594998FS	AGGTATTCCTGACTCATAGGTTTG	c7p114594998ES	TAGACTGGATTAAGAAAATTTGGC
chr7	115373967	115374156	115586731	115586920	-	10	189	4	L1PA3	"COLO2T,COLO2N"	5	170	"T-rich,AluJr"		TFEC		c7p115374061FS	TGTTGAATTGTCCAAATAAATGAG	c7p115374061ES	AAAAATCAGACACCACCTATTCTC
chr7	115842413	115843094	116055177	116055858	+	26	681	4	noL1	"COLO2T,COLO2N"	45	134	AluSq2		"CAV2,CAV1"		c7p115842753FS	CTGAATTGTTCATTTAACCTTGTG	c7p115842753ES	ATTCTTGAAAGATACCAAGGGTC
chr7	115855940	115856131	116068704	116068895	-	21	191	3	L1PA3	"COLO2T,COLO2N"	1	65	L1ME1		"CAV2,CAV1"		c7p115856035FS	TACTGCAAATAAGAAGATTCCTCC	c7p115856035ES	TATATTTTTACACACAGGAAGGGG
chr7	116956759	116957535	117169523	117170299	+	25879	776	34	L1HS	"COLO2T,COLO2N"	14046	776	"L1HS,L2,MIRb"		CFTR		c7p116957147FS	TAGTCCCTTCTCAGTCAGCAATAG	c7p116957147ES	TAATGCTAGATGACACGTTAGTGG
chr7	117260019	117260172	117472783	117472936	-	62	153	2	noL1	"COLO2T,COLO2N"	22	153	"MER74A,AluSx3"		CTTNBP2		c7p117260095FS	ATAACACTCCTTCAGTCAACCTTC	c7p117260095ES	GTTTGAATAATTTCAGCAGATTCC
chr7	117412848	117413078	117625612	117625842	+	13	230	4	L1PA3	"COLO2T,COLO2N"	14	272	"AT_rich,AluSp"				c7p117412963FS	CATACGTCCATGAAGTTAGAATTG	c7p117412963ES	TCATCATTCTCAGTAAACTGTTGC
chr7	118071271	118071408	118284035	118284172	+	18	137	2	L1PA12	COLO2T	0	0	L1PA12				c7p118071339FS	TGAATTAATAGCTGGATTCCTACC	c7p118071339ES	TTATTATGTCATTGAAAGCCAGAG
chr7	119061171	119061301	119273935	119274065	-	61	130	6	L1PA3	"COLO2T,COLO2N"	37	130	"(TTTTA)n,L1PA13"				c7p119061236FS	AGTTTACCAACTAACAGCTGGATG	c7p119061236ES	TAGACTGGATTAAGAAAATGTGGC
chr7	119083802	119084059	119296566	119296823	-	295	257	7	L1HS	"COLO2T,COLO2N"	528	207	"L1MA9,L1HS,(T)n"				c7p119083930FS	TCCTACCCTTGATAATTAGGTTTG	c7p119083930ES	AAATGTCAAACAATGATAGACTGG
chr7	119294998	119295134	119507762	119507898	+	41	136	3	L1PA3	"COLO2T,COLO2N"	34	134	L1PA3				c7p119295066FS	AATTATAGGAATCATGCCTTCTTG	c7p119295066ES	TACCCAAAGGACTATAAATCATGC
chr7	121706120	121706487	121918884	121919251	-	494	367	4	L1PA2	"COLO2T,COLO2N"	280	367	"L1PA2,L1PA16"				c7p121706303FS	TCATAAATTATTTCCCAAGGTTTC	c7p121706303ES	AACTAGAAATACCATTTGACCCAG
chr7	122108535	122108636	122321299	122321400	+	682	101	6	L1PA3	"COLO2T,COLO2N"	656	398	L1PA3		CADPS2		c7p122108585FS	TTCTCCAGAGAATAACCTGTCTTC	c7p122108585ES	TAGACTGGATTAAGAAAATGTGGC
chr7	123424047	123424512	123636811	123637276	+	13	465	3	noL1	"COLO2T,COLO2N"	28	472	"(A)n,AluYb8"		"BC041947,L13779"		c7p123424279FS	AAGTTTTGTCTCTACCACTCAAGG	c7p123424279ES	TTGGAAAGTCTAGTCCATAGTTCC
chr7	124259242	124259345	124472006	124472109	+	191	103	4	noL1	"COLO2T,COLO2N"	359	104	"AluJb,L1ME3C"		"DKFZp586D211,POT1"		c7p124259293FS	TTGATTCTTCTTTTTATTTTTGGG	c7p124259293ES	CACTGAACTCATTTTATGACAAGG
chr7	126995583	126995766	127208347	127208530	+	29	183	2	noL1	"COLO2T,COLO2N"	10	65	L1PA3				c7p126995674FS	GCTCAAGGATAGATTTGAACTCAG	c7p126995674ES	ATTAAAAAGTCAGGAAACAACAGG
chr7	127431289	127431395	127644053	127644159	-	63	106	6	noL1	"COLO2T,COLO2N"	73	68			SND1		c7p127431342FS	AGTTAAATAAATCTCAAACCACCG	c7p127431342ES	AAGATTTCATGGCATAGAGAAAAG
chr7	129294738	129295280	129507502	129508044	+	8776	542	26	L1HS	"COLO2T,COLO2N"	7960	542	"L1HS,(A)n"		UBE2H		c7p129295009FS	TTTGTATTTTTAGTAGAGACGGGG	c7p129295009ES	TGGGAGATATACCTAATGCTAGATG
chr7	129908429	129909228	130121193	130121992	+	109111	799	46	L1HS	"COLO2T,COLO2N"	85114	625	"T-rich,L1HS"	LINE:dbRIP			c7p129908828FS	AGGTTTAAAGCCTCTTTCTGAATC	c7p129908828ES	CATATGTAACTAACCTGCACAATG
chr7	130036874	130037423	130386334	130386883	-	1021	549	27	L1HS	"COLO2T,COLO2N"	1460	902	"(TTG)n,L1HS,L1MB5,T-rich"				c7p130037148FS	TTTCTCCTCTTTCTCTCTAACCTG	c7p130037148ES	TGGGAGATATACCTAATGCTAGATG
chr7	130227566	130228024	130577026	130577484	+	3148	458	17	L1HS	"COLO2T,COLO2N"	16	213	"L1HS,AT_rich,(A)n"		"CR618431,AK095549"		c7p130227795FS	ACTAAACTCTACCACGTAGTTGCC	c7p130227795ES	AACCATCATTCTCAGCAAACTATC
chr7	131313546	131313671	131663006	131663131	-	24	125	2	L1PA4	COLO2T	0	0	"(TTTA)n,L1PA4"				c7p131313608FS	GGTAGTGGCTACTATATTGGATGG	c7p131313608ES	CGTATGTTTATTGTGGCACTATTC
chr7	131366518	131366751	131715978	131716211	-	69	233	7	L1PA3	"COLO2T,COLO2N"	30	209	"L1PA3,CT-rich"				c7p131366634FS	CTAGACTAGAAGCATGGAGGAGAG	c7p131366634ES	TGGAAATCATCATTCTCAGTAAAC
chr7	131617348	131617961	131966808	131967421	-	12	613	2	L1PA3	"COLO2T,COLO2N"	2	65	"AluJb,L1PA3,Charlie7"		PLXNA4		c7p131617654FS	TAGTATGTTGAAACTGACTCAGCC	c7p131617654ES	ACCAGAGACCAAACTCTAAAACAC
chr7	134000892	134001216	134350352	134350676	+	19120	324	24	L1HS	"COLO2T,COLO2N"	15321	328	"AluSz6,L1HS,(A)n,(TTTTTA)n"	LINE:dbRIP	BPGM		c7p134001054FS	TAAAGCCTGTTTATGGTAATAGGG	c7p134001054ES	GATGAGTTCATATCCTTTGTAGGG
chr7	135229436	135229835	135578896	135579295	-	10	399	4	noL1	"COLO2T,COLO2N"	2	65	"AluSz6,(T)n,MIR3"				c7p135229635FS	AAAACCTATGGGAAATTATTGAGC	c7p135229635ES	AATAACATACAACGAGGCTTTTTC
chr7	136015418	136015616	136364878	136365076	-	51	198	5	L1PA3	"COLO2T,COLO2N"	58	198	L1PA3				c7p136015517FS	TTCACTAACCAAGTGTCTGTTGTC	c7p136015517ES	ATAGACTGGATTAGGAAAATGTGG
chr7	136097830	136098146	136447290	136447606	-	65	316	9	L1PA3	"COLO2T,COLO2N"	80	415	"L1PA3,MER5A"				c7p136097988FS	CATTTAACCAATGCCTTTAAGTTC	c7p136097988ES	TCATTCTCAGTAAACTATTGCACG
chr7	136522954	136523094	136872414	136872554	+	422	140	4	L1PA3	"COLO2T,COLO2N"	499	125					c7p136523024FS	TTAAATTTTGGAACTTTTGAGTGG	c7p136523024ES	ACAATGAGATCACATAGACACAGG
chr7	137160917	137161017	137510377	137510477	+	12	100	2	noL1	"COLO2T,COLO2N"	18	67	(CA)n		"DGKI,DGKi"		c7p137160967FS	AGATGCAACCTACAAACTGATTTC	c7p137160967ES	ATATTTAACAACGAAACCCAAAAG
chr7	137947645	137947753	138297105	138297213	+	1327	108	21	noL1	"COLO2T,COLO2N"	976	108	"SVA_F,(A)n"		SVOPL		c7p137947699FS	ATAGGAAAACATGGTAAACCTGAC	c7p137947699ES	TAGAAAGAGGTAGACATGGGAGAC
chr7	139849482	139850041	140203013	140203572	+	12	559	3	noL1	"COLO2T,COLO2N"	17	73	"MADE1,L1MB3,AT_rich,AluSq"				c7p139849761FS	GGAAGAAACTCAGATAAAACAAGC	c7p139849761ES	AGACAAAAAGTAGAATGGTGGTTG
chr7	140407917	140408326	140761448	140761857	-	57531	409	45	L1HS	"COLO2T,COLO2N"	60580	841	"L1HS,(T)n,L1MC4a"				c7p140408121FS	CATCTAGAGTGGCTCTATCAGCTC	c7p140408121ES	TCATTCTCAGTAAACTATCGCAAG
chr7	141227851	141228474	141581382	141582005	-	13413	623	29	L1HS	"COLO2T,COLO2N"	5180	623	"L1HS,L1M1,(T)n,L1P4a"				c7p141228162FS	ATTCATTCACCCCTTACTTAGTTG	c7p141228162ES	TAATGCTAGATGACACGTTAGTGG
chr7	141266596	141267000	141620127	141620531	-	14672	404	34	L1HS	"COLO2T,COLO2N"	20137	321	"L2a,L1HS,AT_rich"	LINE:dbRIP			c7p141266798FS	GTAGTGATAGCTATGGGGTACAGG	c7p141266798ES	GATGAGTTCATATCCTTTGTAGGG
chr7	142503615	142503717	142793493	142793595	-	400	102	2	L1PA5	"COLO2T,COLO2N"	170	65					c7p142503666FS	CAGTATTTAAGAGGTTGAAATGGC	c7p142503666ES	GTTGAAGTAGTTTACAGTCCCACC
chr7	142528924	142529065	142818802	142818943	+	29	141	4	noL1	"COLO2T,COLO2N"	119	169	"MLT2A1,MER101-int"	"LINE:Beck,Ewing,Iskow,Stewart"			c7p142528994FS	AGTGCAGTGTTTTGTTTTGTTTTC	c7p142528994ES	ATTTAGGGATAATAAAATGGGAGG
chr7	144013633	144013770	144382700	144382837	-	102	137	15	L1HS	"COLO2T,COLO2N"	45	445	"L1HS,L1MEg"	LINE:dbRIP	"TPK1,hTPK1"		c7p144013701FS	TTTTAAAAATTAGCTGAGCATGG	c7p144013701ES	ATGGATAAGTGGAAAATACATTGG
chr7	144694260	144694731	145063327	145063798	+	27972	471	15	L1HS	"COLO2T,COLO2N"	30422	302	"L1HS,MLT2F"	LINE:dbRIP			c7p144694495FS	GAAAAGTTTTGGAAAGAGAAAATG	c7p144694495ES	ATTCATGTTCCTTTAATGTCCTTC
chr7	145341320	145341645	145710387	145710712	-	159	325	9	L1PA2	"COLO2T,COLO2N"	283	322	"L1PA2,L1MEg"				c7p145341482FS	TTTAATAGGAACGGAGATTTCATC	c7p145341482ES	TCATCATTCTCAGTAAACTATCGC
chr7	146299215	146299465	146668282	146668532	+	636	250	11	L1PA3	"COLO2T,COLO2N"	442	280	L1PA3		CNTNAP2		c7p146299340FS	TTTATAGTAGGCCAGAGAGTGACC	c7p146299340ES	TAGACTGGATTAAGAAAATGTGGC
chr7	147170279	147170669	147539346	147539736	-	602	390	19	L1HS	"COLO2T,COLO2N"	451	390	"T-rich,L1HS,AT_rich"		CNTNAP2		c7p147170474FS	CATAATTCATTTGCTCTTCACAAC	c7p147170474ES	ATGATGAGTTCATGTCCTTTGTAG
chr7	151274241	151274370	151643308	151643437	-	48	129	3	L1HS	"COLO2T,COLO2N"	13	65	"AT_rich,L1PA5"				c7p151274305FS	CCTTTCTTCTAAGTGTTGCTTTTC	c7p151274305ES	TAGTTGCCAGAATCAATTCATAAG
chr7	152581333	152581732	152950400	152950799	-	3234	399	21	noL1	COLO2T	0	0					c7p152581532FS	ATTCACAAAAAGACAGACACACAC	c7p152581532ES	TGCATTGACTCAGATTTACTGTTC
chr7	153785946	153786528	154155013	154155595	+	224414	582	52	L1HS	"COLO2T,COLO2N"	80722	583	"THE1B,L1HS,MLT1D"		DPP6		c7p153786237FS	TCTGGAGACTGGAAGTCTAAAATC	c7p153786237ES	ACACCGCATATTCTCACTCATAG
chr7	154056373	154056703	154425440	154425770	-	533	330	13	L1PA4	"COLO2T,COLO2N"	372	331	L1PA4		DPP6		c7p154056538FS	TTTTTGTAGAGATGGAGTTTCACC	c7p154056538ES	ATGATGAGTTCATGTCCTTTGTAG
chr7	157248167	157248331	157555406	157555570	+	119	164	3	L1PA2	"COLO2T,COLO2N"	6	65	L1PA2		PTPRN2		c7p157248249FS	AAATTTGAGTTGGACTGGACAC	c7p157248249ES	AACCCAAATGTCCAACAATAATAG
chr7	158144432	158144821	158451671	158452060	+	35	389	3	noL1	"COLO2T,COLO2N"	49	394	"AluJr,AluSx"		NCAPG2		c7p158144626FS	TTAGCTGCAATTTACTAAGCACTG	c7p158144626ES	AATATGCCAGTAAGCAGGATAAAC
chr7	158568019	158568200	158875258	158875439	+	39	181	4	L1PA4	"COLO2T,COLO2N"	1	65	"L1PA4,(CAGA)n"		VIPR2		c7p158568109FS	AATTACATGAGGATGATGGTTAGC	c7p158568109ES	CGTATGTTTACTGTGGCACTATTC
chr7	158789909	158790162	159097148	159097401	+	281	253	4	L1PA4	"COLO2T,COLO2N"	175	253	"L1PA4,L1ME3E"				c7p158790035FS	ACAGGGCTTCAAATATTCTTACAC	c7p158790035ES	CAAATGTCCAACAATGATAGACTG
chr8	2250831	2251114	2263424	2263707	-	101	283	6	L1PA2	"COLO2T,COLO2N"	152	193	(TTTTTA)n				c8p2250972FS	TATTATAGGGAAGTAACTGCAGGC	c8p2250972ES	TGGAAATCATCATTCTCAGTAAAC
chr8	2644576	2644817	2657169	2657410	-	37	241	5	L1PA3	"COLO2T,COLO2N"	59	118	L1MEe				c8p2644696FS	TAATTTTTCATCCTTTCTGCTTTC	c8p2644696ES	GGGAAATCATCATTCTCAGTAAAC
chr8	2852815	2853104	2865408	2865697	+	471	289	12	L1PA3	"COLO2T,COLO2N"	411	159	L1PA3		"KIAA1890,CSMD1"		c8p2852959FS	TGAATTCTATAAACTGCAGGTGTG	c8p2852959ES	TAGACTGGATTAAGAAAATGTGGC
chr8	4705282	4705438	4717874	4718030	+	61	156	7	L1PA2	"COLO2T,COLO2N"	120	160	"L1PA2,MSTB"		CSMD1		c8p4705360FS	GGGATGTAGTGATAAATTACCAGG	c8p4705360ES	GTTATTCACGATAGCAAAGACTTG
chr8	5816364	5816655	5828956	5829247	-	778	291	10	noL1	"COLO2T,COLO2N"	931	312	AluSx1				c8p5816509FS	CTTATAAAACCATCACATCTCGTG	c8p5816509ES	TTTGTAAAATATAACACAGGTCGG
chr8	5929733	5930760	5942325	5943352	-	2695	1027	28	L1PA4	"COLO2T,COLO2N"	3108	874	"AluJb,(TG)n,L1PA4"				c8p5930246FS	CGATATATGTTCAATGTCGTAAGG	c8p5930246ES	CAAAGAGAGACTGAGGAGTAGAGG
chr8	8371761	8371885	8334351	8334475	+	98	124	9	L1HS	"COLO2T,COLO2N"	88	127	L1HS				c8p8371823FS	CACCTGTAATTCCAGCTACTTAGG	c8p8371823ES	CGTATGTTTATTGTGGCATTATTC
chr8	9634940	9635428	9597530	9598018	+	65704	488	29	L1HS	"COLO2T,COLO2N"	67690	501	L1HS		TNKS		c8p9635184FS	TATTTGTTGCTCAGAGAAATTGAG	c8p9635184ES	TGGGAGATATACCTAATGCTAGATG
chr8	9713087	9713338	9675677	9675928	+	12	251	5	L1PA7	"COLO2T,COLO2N"	14	341	"L1PA3,L1PA7"				c8p9713212FS	AACTTACTTTATGAATCTGGGTGC	c8p9713212ES	AATTTCATATCCAGCCAAACTAAG
chr8	10284658	10284769	10247248	10247359	-	18	111	8	noL1	"COLO2T,COLO2N"	25	116	T-rich		MSRA		c8p10284713FS	GTGAGAAGCTTTGATAAAACACTG	c8p10284713ES	CTGTACTGGGCCTGAACATATAG
chr8	13517292	13517940	13472921	13473569	+	727	648	6	noL1	"COLO2T,COLO2N"	1526	648	"AT_rich,AluYb8"				c8p13517616FS	TACTTTCCAAAACAAAAATATGGG	c8p13517616ES	GAAACCCCGTCTCTACTAAAAATAC
chr8	13548382	13548523	13504011	13504152	+	23	141	3	L1PA3	"COLO2T,COLO2N"	9	95					c8p13548452FS	AGTCTACGGACTTGGTTATAGCAG	c8p13548452ES	TAAACAATCACAAGGACAAAACAC
chr8	15174699	15174803	15130328	15130432	+	119	104	6	noL1	"COLO2T,COLO2N"	179	104	"L1MA9,AluSq"				c8p15174751FS	TTACACTTTTTGTGGTTTTCACAC	c8p15174751ES	AAAATGTGATCAAAATGTGAAGTG
chr8	16117931	16118222	16073560	16073851	+	63	291	7	L1PA2	"COLO2T,COLO2N"	54	74	"L1PA2,L1M7"				c8p16118076FS	TTGGACATTTGATTTGTTCTATTG	c8p16118076ES	TTAGTTAAAGCCAAGGAGGTTTAG
chr8	16534375	16534561	16490004	16490190	-	35	186	4	L1PA2	"COLO2T,COLO2N"	24	186	L2a				c8p16534468FS	AGTTCCTAGAACCTACTCTTTCCC	c8p16534468ES	TCATTCTCAGTAAACTATCGCAAG
chr8	16789022	16789302	16744651	16744931	+	2741	280	24	L1PA3	"COLO2T,COLO2N"	2639	290	"L1PA3,L2c"				c8p16789162FS	CTGGAAAAGTAGAACTTGATAGGG	c8p16789162ES	TTTGTAGAGACATGGATGAAATTG
chr8	17903737	17903920	17859457	17859640	-	163	183	10	L1HS	"COLO2T,COLO2N"	53	269	"L1HS,(T)n"	LINE:dbRIP	PCM1		c8p17903828FS	AAGACAGGACTTCTTTCTGAGATG	c8p17903828ES	GATGAGTTCATATCCTTTGTAGGG
chr8	18470189	18470550	18425909	18426270	-	13	361	2	L1PA2	"COLO2T,COLO2N"	4	129	L1PA2		"PSD3,DKFZp686A1849"		c8p18470369FS	TCTAAATCTTCATGGAACCTTTTC	c8p18470369ES	CATATACACCATGGAATACTACGC
chr8	18500165	18500674	18455885	18456394	+	980	509	19	L1HS	"COLO2T,COLO2N"	3889	509	"L1M3,L1HS"	"LINE:dbRIP,Ewing"	"PSD3,DKFZp686A1849"		c8p18500419FS	TTATTGAATATGTAGGTCGCTGTG	c8p18500419ES	TCATTCTCAGTAAACTATCGCAAG
chr8	18812391	18812895	18768111	18768615	+	154812	504	49	L1HS	"COLO2T,COLO2N"	143929	531	"AluJr,L1HS"		PSD3		c8p18812643FS	TAGGCTATACTTCTGGCTTTGTTC	c8p18812643ES	TCATTCTCAGTAAACTATCGCAAG
chr8	23311205	23311455	23255260	23255510	+	18	250	2	noL1	"COLO2T,COLO2N"	29	250	"AluSx,AluY"		"LOXL2,ENTPD4"		c8p23311330FS	ACTTGTGAACAACTTAATTTGCAG	c8p23311330ES	TACCACAATAAACACAAAAGCAAC
chr8	23730971	23731426	23675026	23675481	-	52	455	4	L1PA3	"COLO2T,COLO2N"	52	455	"L1PA3,L1MEc"				c8p23731198FS	CAAAATAACGTGAAAACAGTCTTG	c8p23731198ES	AACTAGAAATACCATTTGACCCAG
chr8	24549947	24550506	24494057	24494616	+	227	559	2	noL1	"COLO2T,COLO2N"	363	559	"L1PA3,L1MC1,AluY"				c8p24550226FS	TTCATCTTCTCCTTGAGGTAAAAC	c8p24550226ES	GAAACCCTGTCTCTACTGAAAATAC
chr8	24750196	24750601	24694306	24694711	-	125	405	16	L1HS	"COLO2T,COLO2N"	105	640	"L1MEf,L1HS"				c8p24750398FS	AAGAATATGTAATCCCATGTCACC	c8p24750398ES	GTGTAAACACAAAAATGCCATAAG
chr8	24982198	24982331	24926281	24926414	-	11	133	3	noL1	"COLO2T,COLO2N"	3	192		"LINE:Ewing,Iskow,Stewart"			c8p24982264FS	GTGCCTAACGTAGTTTTTGAGTTC	c8p24982264ES	GCTGATCTCTTTATTGTCTGTGTG
chr8	26569065	26569675	26513148	26513758	-	59	610	8	noL1	"COLO2T,COLO2N"	169	461	"T-rich,AT_rich"		DPYSL2	"DPYSL2.13,DPYSL2.L"	c8p26569370FS	ATAGCACTTTGGTCTGGAAAAC	c8p26569370ES	ATTTAATCTGCAGCAAAATCTAGG
chr8	26578782	26578904	26522865	26522987	-	33	122	2	noL1	"COLO2T,COLO2N"	12	65	L2				c8p26578843FS	CATGGTCACTGACTTCAACTTAAC	c8p26578843ES	TGAAAGTAGAGGAAATTGCTTAGG
chr8	26589003	26589324	26533086	26533407	-	1945	321	10	L1PA3	"COLO2T,COLO2N"	502	268	"L1MB3,L1PA3"				c8p26589163FS	ACTGAAACTCTGTCCTCATTAAGC	c8p26589163ES	TCATTCTCAGTAAACTATCGCAAG
chr8	26915593	26916344	26859676	26860427	+	11	751	2	noL1	"COLO2T,COLO2N"	4	69	"(TAAA)n,AluSg7,Tigger3b"				c8p26915968FS	GAAGACACAAACACACATATAGCC	c8p26915968ES	CACCTATAATCCCAGCTACTCG
chr8	27033024	27033546	26977107	26977629	+	153060	522	44	L1HS	"COLO2T,COLO2N"	189412	522	"L1HS,MIR,LOR1a"				c8p27033285FS	TAATCAGACTCAGGGATTTTTCTC	c8p27033285ES	TCATTCTCAGTAAACTATCGCAAG
chr8	28205371	28205777	28149452	28149858	-	42	406	6	L1HS	"COLO2T,COLO2N"	36	406	"L1HS,(TTTA)n,L3"				c8p28205574FS	ATCATATTTGCTTCCTCATTTTTC	c8p28205574ES	TCATTCTCAGTAAACTATCGCAAG
chr8	28532654	28533338	28476735	28477419	+	51	684	8	noL1	"COLO2T,COLO2N"	132	685	"MER63B,(A)n,AluY"				c8p28532996FS	GCCTGTAGTCCCAGCTACTCG	c8p28532996ES	CACCTGGATACCAAGTCTCTAAAC
chr8	29033088	29033665	28977169	28977746	-	286874	577	41	L1HS	"COLO2T,COLO2N"	251537	577	L1HS		"KIF13B,AF086219"		c8p29033376FS	ACATCCAAAGTTCCTTTTCTAGG	c8p29033376ES	TAATGCTAGATGACACGTTAGTGG
chr8	31490954	31491107	31371412	31371565	-	24	153	3	L1PA6	"COLO2T,COLO2N"	11	68	(TTTTTG)n				c8p31491030FS	TAGCCCTGGCATATGTATTATAGC	c8p31491030ES	TGAGATCACTTGGATATAGAGCAG
chr8	31534631	31534848	31415089	31415306	+	26	217	5	L1PA2	"COLO2T,COLO2N"	10	242	"L1PA2,A-rich,L1PA16"				c8p31534739FS	CTACACTTACTCAGGGAAAGACG	c8p31534739ES	AAACTAGAAATCAACAGCAGAAGG
chr8	31753404	31753624	31633862	31634082	-	170	220	5	L1PA4	"COLO2T,COLO2N"	109	277	L1PA4		NRG1		c8p31753514FS	TAAATGAATAGTAGAAAGCCTGCC	c8p31753514ES	AAAGTGTTCCTATTTCTCCACATC
chr8	31904487	31905072	31784945	31785530	+	16	585	6	L1PA4	"COLO2T,COLO2N"	58	68	"AT_rich,AluYa5,L1PA4"		NRG1		c8p31904779FS	AAGTGGAACTTCAAAAATACCAAG	c8p31904779ES	ACATCTAGGAGCATAAATCCAGAG
chr8	32792967	32793357	32673425	32673815	-	7611	390	25	L1HS	"COLO2T,COLO2N"	8025	467	"MSTB1,AT_rich,L1HS"				c8p32793162FS	TATGTTTCATAGCAGATTAGGGTG	c8p32793162ES	AACAATGAGATCACATGGACATAG
chr8	33238472	33238919	33118930	33119377	-	3299	447	35	L1HS	"COLO2T,COLO2N"	3839	406	"L1HS,(T)n"				c8p33238695FS	TGCCCAACTAATTTTGTATTTTTAG	c8p33238695ES	TCATTCTCAGTAAACTATCGCAAG
chr8	35364384	35364636	35244842	35245094	+	1228	252	15	noL1	"COLO2T,COLO2N"	418	366	AluY		UNC5D		c8p35364510FS	TATTACTTAGCCGATCAATTTTCC	c8p35364510ES	CTTATGTTCGTGAATAATGGAATG
chr8	35504911	35505162	35385369	35385620	-	11	251	3	L1PA2	"COLO2T,COLO2N"	23	251	"L1PA2,MLT1A0"		UNC5D		c8p35505036FS	TTCTTCTTTGTGCTCTCACATTAG	c8p35505036ES	TCATTCTCAGTAAACTATCGCAAG
chr8	40414903	40415133	40295746	40295976	+	3419	230	11	L1PA2	"COLO2T,COLO2N"	3278	666	"L1PA3,L1PA2,A-rich"				c8p40415018FS	ATCATTATACCAACCAGACCTAGC	c8p40415018ES	TCATTCTCAGTAAACTATCGCAAG
chr8	40839215	40839708	40720058	40720551	+	394621	493	26	L1HS	"COLO2T,COLO2N"	426115	540	"L2,L1HS,L1PA5"		ZMAT4		c8p40839461FS	ATACAAATCAGATCACCTCACTCC	c8p40839461ES	AACCATCATTCTCAGCAAATTATC
chr8	41019030	41019491	40899873	40900334	-	127	461	3	noL1	"COLO2T,COLO2N"	412	69	L1PB1				c8p41019260FS	TGCAATTCTACATCTTTTAAGTGG	c8p41019260ES	AGAAAAACTTCAGAGCTCAAAGAC
chr8	41480750	41481133	41361593	41361976	+	92629	383	55	L1HS	"COLO2T,COLO2N"	58833	376	L1HS		"gcp16,GOLGA7"		c8p41480941FS	AGAGCGTAAGATTATTCAAAGAGC	c8p41480941ES	AGTTTGAAGTCAGGTAGTGTGATG
chr8	41670050	41670151	41550893	41550994	-	168	101	2	noL1	COLO2T	0	0	AluSq		"ANK1,NKX6-3"		c8p41670100FS	ATACCATGGCTACTATTGCCACAC	c8p41670100ES	AGAGATGGAAGGATGATGTATCTG
chr8	41947849	41948346	41828692	41829189	+	264	497	17	L1PA5	"COLO2T,COLO2N"	718	303	"L2a,L1PA5"		MYST3		c8p41948097FS	ATAATTGCCTCCAGACTAAACTTG	c8p41948097ES	ATCATCATTCTCAGCAAATTATTG
chr8	42238951	42239141	42119794	42119984	+	395	190	9	L1PA2	"COLO2T,COLO2N"	272	190	"L1PA2,MER34B-int,(GAAAA)n,AluY"				c8p42239046FS	ATCACTAGAGCCCAGAAAATTGAG	c8p42239046ES	CATTTTTAGGACACAAAAGGAGAC
chr8	42911522	42911716	42792365	42792559	-	12	194	2	noL1	"COLO2T,COLO2N"	3	194	L1PA7		HOOK3		c8p42911619FS	GTTAGGGAGGAGTACCTCTTTTTC	c8p42911619ES	AATTGGAAGTAAAACACTCCTCAG
chr8	43330051	43330240	43210894	43211083	-	22	189	2	noL1	"COLO2T,COLO2N"	25	189	L1MA10		POTEA		c8p43330145FS	ACTTTGTTTTTGTTTGTTTGTTTG	c8p43330145ES	AGACAATGAACCCTGTAAGATAGG
chr8	43345201	43345810	43226044	43226653	-	98785	609	82	L1HS	"COLO2T,COLO2N"	98232	619	"L1HS,AluSx1,L1MEc"				c8p43345505FS	ATCTAGTCAGTATTTGCTTCCACC	c8p43345505ES	TAATGCTAGATGACACGTTAGTGG
chr8	43365154	43365410	43245997	43246253	-	4881	256	17	L1PA2	"COLO2T,COLO2N"	4298	185	"L1PA2,L1PA16"				c8p43365282FS	TAGCTAAGATTACAGACATGTGCC	c8p43365282ES	TGGAAATCATCATTCTCAGTAAAC
chr8	43912338	43912575	43793181	43793418	-	17	237	3	noL1	"COLO2T,COLO2N"	18	66	ALR/Alpha				c8p43912456FS	CTTTGTGATGTCTGCACTTTATTC	c8p43912456ES	AGATTTTCTTTGAAGACATTACCG
chr8	47010729	47011105	46891564	46891940	-	16	376	2	L1PA3	"COLO2T,COLO2N"	4	713	"L1PA3,ALR/Alpha"				c8p47010917FS	GATAAACTTCTTTGTGATGTGTGC	c8p47010917ES	CGTATGTTTATTGTGGCACTATTC
chr8	48310550	48310755	48148002	48148207	+	14	205	4	L1PA2	"COLO2T,COLO2N"	10	312	"L1MC1,L1PA2"				c8p48310652FS	ACATAAGTTTTCAGTTCTTCTGGG	c8p48310652ES	CAAATGTCCAACAATGATAGACTG
chr8	48406874	48407170	48244321	48244617	-	21273	296	46	L1HS	"COLO2T,COLO2N"	11279	288	"AluSz6,L1HS,AT_rich,Tigger3b"		KIAA0146		c8p48407022FS	TAGACAATTGGAACACAAAGGTAG	c8p48407022ES	GATGAGTTCATATCCTTTGTAGGG
chr8	48702537	48702643	48539984	48540090	+	197	106	3	L1PA4	"COLO2T,COLO2N"	306	337			KIAA0146		c8p48702590FS	TGAAAACACAAATGCTAACTTCTC	c8p48702590ES	ATAGACTGGATTAAGCAAATGTGG
chr8	48868713	48868820	48706160	48706267	+	21	107	4	noL1	"COLO2T,COLO2N"	16	107	"(A)n,AluSx"		PRKDC		c8p48868766FS	ATTGCTTGGGATAGACTAGATGAG	c8p48868766ES	CACACTGTCTCTCACATCTTTTTC
chr8	49532316	49532489	49369763	49369936	-	13	173	3	L1PA3	"COLO2T,COLO2N"	30	65	L1PA3				c8p49532402FS	AAGTTTTATAAGGAAACGTAGGGG	c8p49532402ES	AACTAGAAATACCATTTGACCCAG
chr8	49633304	49633475	49470751	49470922	-	14	171	3	noL1	"COLO2T,COLO2N"	19	88	L1MD2				c8p49633389FS	CCAGTTAAGACGAGGTTTGTTTAC	c8p49633389ES	ATTGCTGGTGGGAATATAAAGTAG
chr8	51242367	51242665	51079814	51080112	+	13	298	6	L1PA2	"COLO2T,COLO2N"	18	350	"L1PA2,AluJo,(TAAAA)n"		SNTG1		c8p51242516FS	ATAGAATCTTGCAAACTTGCCC	c8p51242516ES	TCATTCTCAGTAAACTATCGCAAG
chr8	52765052	52765321	52602499	52602768	-	130	269	5	L1PA3	"COLO2T,COLO2N"	138	271	L1PA3		PXDNL		c8p52765186FS	TTTTCCCTAATAAGGTAACTGCTC	c8p52765186ES	TCATTCTCAGTAAACTATCGCAAG
chr8	58331867	58332071	58169313	58169517	+	208	204	3	L1PA4	"COLO2T,COLO2N"	28	179	L1PA4				c8p58331969FS	CAGACATTTAAACAACATTTCAGC	c8p58331969ES	ACTGATACACATGTTGGTTGGTAG
chr8	58495665	58495981	58333111	58333427	+	47	316	5	L1PA2	"COLO2T,COLO2N"	44	316	"L1PA2,LTR43-int"				c8p58495823FS	AGAAGAACTGAGGTCTCTCACAAC	c8p58495823ES	ATGATGAGTTCATGTCCTTTGTAG
chr8	59398609	59398735	59236055	59236181	+	14	126	2	L1PA3	"COLO2T,COLO2N"	12	107	"L1PA3,AT_rich"				c8p59398672FS	TTTAATATCCTGCCCTACAAATTC	c8p59398672ES	CAAATGTCCAACAATGATAGACTG
chr8	59559703	59560153	59397149	59397599	+	98	450	11	L1HS	"COLO2T,COLO2N"	38	217	"L1HS,MamRep1161,MLT1B"				c8p59559928FS	GCAACAAACAAAAGTCAGTGTAAC	c8p59559928ES	TCATTCTCAGTAAACTATCGCAAG
chr8	59995781	59996190	59833227	59833636	+	560	409	25	L1PA2	"COLO2T,COLO2N"	702	409	"L2a,L1PA2,(A)n,AT_rich"		TOX		c8p59995985FS	AAGTTTCAAAAACAGCCATTTTAC	c8p59995985ES	TTTGTAGGGACATGTATGAAATTG
chr8	60227490	60227690	60064936	60065136	-	23	200	4	L1PA6	"COLO2T,COLO2N"	144	200	"(TTTC)n,L1PA6"				c8p60227590FS	AAATACACCAAGGCTGTTATTTTC	c8p60227590ES	GTCATTATACATTTTTCCAAACCC
chr8	60584684	60584990	60422130	60422436	-	7944	306	9	noL1	COLO2T	0	0					c8p60584837FS	AAAAATACAAAAATTAGCCAGGTG	c8p60584837ES	AAAACTTCTCTTTGAAAGCCTATG
chr8	60614112	60614386	60451558	60451832	+	110	274	5	L1PA3	"COLO2T,COLO2N"	48	238	L1MC3				c8p60614249FS	AGGGCTGATATTAACATTTCAAAG	c8p60614249ES	TCATTCTCAGTAAACTATCGCAAG
chr8	61030748	61031170	60868194	60868616	+	101	422	3	L1PA3	"COLO2T,COLO2N"	64	66	"L1PA3,L1PA6"				c8p61030959FS	GAACCATATCACATATTGCTTGAG	c8p61030959ES	TGGAAATCATCATTCTCAGTAAAC
chr8	62277707	62278002	62115153	62115448	+	246	295	8	noL1	"COLO2T,COLO2N"	168	296	(ATG)n	LINE:Iskow			c8p62277854FS	TTCTTAAAGAGACTTCCTCCACTG	c8p62277854ES	ATCTTTTTGGTTGTGAACTAAAGG
chr8	62826929	62827037	62664375	62664483	-	47	108	6	noL1	"COLO2T,COLO2N"	47	111	"SVA_F,(T)n"				c8p62826983FS	AAATTTTCAGGTACGACACATAGC	c8p62826983ES	TGTGTAGAAAGAAGTAGACATGGG
chr8	64872430	64872575	64709876	64710021	-	200	145	11	L1PA2	"COLO2T,COLO2N"	180	251	L1PA2				c8p64872502FS	AGGGAGATTTCATGTAAGTAATGC	c8p64872502ES	CAAATGTCCAACAATGATAGACTG
chr8	65513255	65513461	65350701	65350907	+	95	206	5	L1PA3	"COLO2T,COLO2N"	238	170	L1PA3				c8p65513358FS	TCCAGGAGATTAATTATTTTGGAG	c8p65513358ES	TAGACTGGATTAAGAAAATGTGGC
chr8	66466797	66467128	66304243	66304574	+	52038	331	47	L1HS	"COLO2T,COLO2N"	40096	331	"(TAAA)n,L1HS,MER20"				c8p66466962FS	CCTTTTCCATGTTATCTTTGAGTC	c8p66466962ES	GATGAGTTCATATCCTTTGTAGGG
chr8	67098778	67099269	66936224	66936715	-	14694	491	14	L1HS	"COLO2T,COLO2N"	7369	393	L1HS		"DNAJC5B,DKFZp434M0927"		c8p67099023FS	ATATGAGCCTTCTGTGACTTATCC	c8p67099023ES	TCATTCTCAGTAAACTATCGCAAG
chr8	67544013	67544442	67381459	67381888	-	5133	429	25	noL1	"COLO2T,COLO2N"	1902	395	"AluJb,AluSx"	"LINE:Ewing,Iskow"			c8p67544227FS	GGTGTGGAGAACTAAGAGAAAATG	c8p67544227ES	GGGAATAACCATGTAGGATGTTAG
chr8	70206779	70207205	70044225	70044651	+	10	426	4	noL1	"COLO2T,COLO2N"	24	426	L1PA5				c8p70206992FS	CTCAAGAGATCTGATGGGTTTATC	c8p70206992ES	TTTGTTTGACTTCTCTTTTCTCAG
chr8	70269171	70269392	70106617	70106838	+	35	221	3	noL1	COLO2T	0	0					c8p70269281FS	TGAATAGAAGAAACATCTGCTGAC	c8p70269281ES	CTACATCAACTTCATCCTGACATC
chr8	70425800	70426166	70263246	70263612	-	29	366	5	L1PA3	COLO2T	0	0	MER45B				c8p70425983FS	TAATATAGGGACGTGACATGAAAG	c8p70425983ES	ATTCTCACTCATAGATGGGAATTG
chr8	70764899	70765087	70602345	70602533	-	16	188	14	noL1	"COLO2T,COLO2N"	18	223	LSU-rRNA_Hsa		"SLCO5A1,OATPRP4"		c8p70764993FS	AGTTTGAAGTCAGGTAGTGTGATG	c8p70764993ES	GTGTCTTTAGATAGTTGACCAGCC
chr8	71585663	71585829	71423109	71423275	-	56	166	3	L1PA4	"COLO2T,COLO2N"	12	153	"L1PA4,L1M5"				c8p71585746FS	AGTAGCTGGCACTACAGGTTTATG	c8p71585746ES	TAAGTTATTTCATCTCCCAACAGC
chr8	71745690	71746181	71583136	71583627	-	57984	491	46	L1HS	"COLO2T,COLO2N"	55797	545	"L1HS,L1MA4A,AluJr4"	LINE:dbRIP	XKR9		c8p71745935FS	AGTAACCAAATCTCCTACATCAGG	c8p71745935ES	TCATTCTCAGTAAACTATCGCAAG
chr8	72175688	72176044	72013134	72013490	+	130	356	2	noL1	COLO2T	0	0		LINE:Stewart			c8p72175866FS	GTGAAGTCTACACTAAGCAAGGTG	c8p72175866ES	ATCATTCCATTCTGATTAATTTGG
chr8	72561294	72561797	72398740	72399243	-	71199	503	39	noL1	"COLO2T,COLO2N"	57489	461	LTR79	"LINE:Ewing,Iskow,Stewart"	BC048982		c8p72561545FS	TACTGGAAAGAGAAGAAACTGAGG	c8p72561545ES	ATTTGAATTTCTGAGATTGTTTCC
chr8	72975237	72975473	72812683	72812919	+	29	236	9	L1PA3	"COLO2T,COLO2N"	337	236	"L1MD3,(TAA)n,L1PA3,L1M5"		"BX647470,AK123315"		c8p72975355FS	ACTAAGTTTAGCCTTCATCTGTGG	c8p72975355ES	TGGAAATCATCATTCTCAGTAAAC
chr8	73413842	73414009	73251288	73251455	-	18	167	2	L1PA4	"COLO2T,COLO2N"	20	79	LTR81A		AK309726		c8p73413925FS	no primer	c8p73413925ES	no primer
chr8	73560249	73560529	73397695	73397975	+	3101	280	25	L1PA2	"COLO2T,COLO2N"	3178	351	"L1PA2,L1PA17"				c8p73560389FS	AGTATTTTCTTCTTTTTGTGGCTG	c8p73560389ES	TCATTCTCAGTAAACTATCGCAAG
chr8	73949870	73950389	73787316	73787835	-	7537	519	13	L1HS	"COLO2T,COLO2N"	7292	446	"MER5A1,L1HS"	LINE:dbRIP	KCNB2		c8p73950129FS	ATAATTTGTTGCTTTCAAGAGTCC	c8p73950129ES	ACACCGCATATTCTCACTCATAG
chr8	75886304	75886646	75723749	75724091	+	597	342	5	noL1	"COLO2T,COLO2N"	9	65	MIRb	"LINE:Ewing,Iskow,Stewart"			c8p75886475FS	AAGGATCTGAAGAGTAACAAGTGG	c8p75886475ES	CTCTTGACTGCCTATTTACCCTAC
chr8	76177485	76177588	76014930	76015033	-	17	103	2	noL1	"COLO2T,COLO2N"	6	103	AluY				c8p76177536FS	ACTCCTATGTTTGCCATATCTTTC	c8p76177536ES	ATTTATATGCCAGCCTAAAATCAG
chr8	76532644	76533227	76370089	76370672	-	11	583	2	noL1	"COLO2T,COLO2N"	65	584	"AluJo,(T)n"		HNF4G		c8p76532935FS	AAGAGCATTGCCATAGAGTAAGAC	c8p76532935ES	ACATTAAGGAGATACAATTCCTGC
chr8	76695697	76696161	76533142	76533606	-	49134	464	37	L1HS	"COLO2T,COLO2N"	22735	469	"L1HS,(T)n"				c8p76695929FS	AAAATGGAAACCAAGACCATATAC	c8p76695929ES	TCATTCTCAGTAAACTATCGCAAG
chr8	77499508	77500000	77336953	77337445	-	40615	492	37	L1HS	"COLO2T,COLO2N"	87220	492	"L1HS,MER85"	LINE:dbRIP			c8p77499754FS	AACTTTTGCTTCACTATTTTGTCAC	c8p77499754ES	TCATTCTCAGTAAACTATCGCAAG
chr8	78719788	78720024	78557233	78557469	-	265	236	10	L1PA3	"COLO2T,COLO2N"	349	297	"L1PA3,LTR16B1"				c8p78719906FS	TGTTACATTTAGAAATTTGGCATC	c8p78719906ES	TCATTCTCAGTAAACTATCGCAAG
chr8	78924617	78924951	78762062	78762396	-	26	334	3	L1PA2	"COLO2T,COLO2N"	27	151	"L1PA2,L1MC1"				c8p78924784FS	ATATAAATGGGATTGTGTTTCAGC	c8p78924784ES	ATGAGTGAGAATATGTGGTGTTTG
chr8	80107149	80107255	79944594	79944700	+	58	106	5	L1PA4	"COLO2T,COLO2N"	56	106	"L1PA11,L1PA4"				c8p80107202FS	GATGACGGGATTAAGAGATTAAAG	c8p80107202ES	TATTGCATGCCTACTATGTTTCAC
chr8	80221713	80221815	80059158	80059260	-	23	102	2	L1PA3	COLO2T	0	0	L1PA3				c8p80221764FS	TTTTTGCAACAATAAGAACTCAAG	c8p80221764ES	ACAGAAAGGTAAAGGGAGAAAGAC
chr8	80246391	80246594	80083836	80084039	-	30	203	6	L1HS	"COLO2T,COLO2N"	33	412	"L1HS,(T)n"				c8p80246492FS	AAACTGAGATGTATAAGGGTAGCG	c8p80246492ES	GATGAGTTCATATCCTTTGTAGGG
chr8	81063241	81063562	80900686	80901007	+	80	321	4	L1PA3	"COLO2T,COLO2N"	53	115	AT_rich		"TPD52,MRPS28"		c8p81063401FS	TAATATTGGCTATTCCCTTCTCAG	c8p81063401ES	TCATTCTCAGTAAACTATCGCAAG
chr8	83732891	83733006	83570336	83570451	+	111	115	8	noL1	"COLO2T,COLO2N"	73	116	"(A)n,Tigger9a"				c8p83732948FS	ATATTAGAATGCCTTGGAAAAGAC	c8p83732948ES	GTATAACACTTCCAATCCCAGAAC
chr8	84919660	84919896	84757105	84757341	-	24	236	6	L1PA3	"COLO2T,COLO2N"	39	242	MIRc				c8p84919778FS	TTTAAGGAGAAGAAATCAGTCCAG	c8p84919778ES	TGGAAATCATCATTCTCAGTAAAC
chr8	85494036	85494299	85331481	85331744	-	180	263	6	L1PA2	"COLO2T,COLO2N"	144	442			RALYL		c8p85494167FS	AATAATTCCCAACATTTTCTTGTC	c8p85494167ES	TCATTCTCAGTAAACTATCGCAAG
chr8	87054850	87055064	86985734	86985948	-	11	214	3	L1PA4	"COLO2T,COLO2N"	33	214	(T)n				c8p87054957FS	AATATCTTTTTCAAAATGCCACTC	c8p87054957ES	GAATTCCAACATATAAAGGGACAC
chr8	87797331	87797698	87728215	87728582	+	518	367	13	L1PA3	"COLO2T,COLO2N"	206	376	"L1PB1,L1PA3"		CNGB3		c8p87797514FS	TTCTTTCATGATGCTTAGTTTCAC	c8p87797514ES	TTAAGCTAATCAAGGAGACACCAG
chr8	88402994	88403204	88333878	88334088	-	11	210	4	L1PA2	"COLO2T,COLO2N"	22	211	"L1MB1,L1PA2"		CNBD1		c8p88403099FS	CAATTTGTAGTTTTCTGGTTTGTG	c8p88403099ES	CAAATGTCCAACAATGATAGACTG
chr8	88450860	88451124	88381744	88382008	-	20	264	3	L1PA3	"COLO2T,COLO2N"	11	65	"L1MEf,L1PA3"		CNBD1		c8p88450992FS	TTTGGTTTCCTAGGTCAATTCTAC	c8p88450992ES	CAAATGTCCAACAATGATAGACTG
chr8	89305253	89305419	89236137	89236303	+	19	166	2	L1PA6	COLO2T	0	0			MMP16		c8p89305336FS	AACTGTCTAAAGAAACACCCTTTG	c8p89305336ES	ACACTGCATGTTGTCACTCATAG
chr8	89426624	89427088	89357508	89357972	-	159640	464	87	L1HS	"COLO2T,COLO2N"	144826	464	"L1PA11,L1HS,(T)n"				c8p89426856FS	GAGTTCATTCATAATTTGGCTCTC	c8p89426856ES	TCATTCTCAGTAAACTATCGCAAG
chr8	89430169	89430343	89361053	89361227	-	234	174	6	L1PA4	"COLO2T,COLO2N"	131	221	"L1PA11,L1PA4"				c8p89430256FS	GCTTATGAAGCTTAGTTTAGCTGG	c8p89430256ES	TAGCAGAATAGATCAATCATGTGG
chr8	89773017	89773198	89703901	89704082	+	735	181	15	L1HS	"COLO2T,COLO2N"	654	121	"L1M2,L1HS"				c8p89773107FS	AACACCACATGTTCTCACTCATAG	c8p89773107ES	CAAATGTCCAACAATGATAGACTG
chr8	90473156	90473629	90404040	90404513	+	269	473	18	L1PA2	"COLO2T,COLO2N"	419	473	"L1PA2,AT_rich"				c8p90473392FS	ATGCCTTAATTTGTTTTTGTTAGG	c8p90473392ES	TACCCAAAGGACTATAAATCATGC
chr8	90633291	90633645	90564175	90564529	-	64	354	3	L1PA2	"COLO2T,COLO2N"	15	109	"L2c,L1PA7"				c8p90633468FS	AAAAGAATTAATTAGGCACACTGG	c8p90633468ES	AAAAACCAAACACCGTATATTCTC
chr8	92603249	92603547	92534073	92534371	+	63834	298	63	L1HS	"COLO2T,COLO2N"	60542	291	"(CA)n,(TAAAAA)n,L1HS"				c8p92603398FS	GATGAGTTCATATCCTTTGTAGGG	c8p92603398ES	GAAATTGGAAACCATCATTCTTAG
chr8	92646033	92646595	92576857	92577419	+	155784	562	58	L1PA2	"COLO2T,COLO2N"	126147	366	"UCON10,L1PA2"				c8p92646314FS	ATTACAGACAATGGATGTTTGTTG	c8p92646314ES	TAATGCTAGATGACACGTTAGTGG
chr8	93120421	93120823	93051245	93051647	-	187	402	11	noL1	COLO2T	0	0	"AluSz6,L2b,AluJb"		RUNX1T1		c8p93120622FS	AATATAGCAAAGTAAGGTCATGGG	c8p93120622ES	GATAGCTAAAACCTTTTGAGTTGC
chr8	95131228	95131467	95062052	95062291	-	922	239	16	L1PA4	"COLO2T,COLO2N"	422	352	L1PA4				c8p95131347FS	GGTTGAAATGTTTAAAATCCAAAG	c8p95131347ES	ATGAAGCTGGAAACTATCATTCTC
chr8	95148670	95148927	95079494	95079751	-	745	257	5	L1PA2	"COLO2T,COLO2N"	1203	257	"L1PA2,L1MB2"				c8p95148798FS	GATCATAATCTTGACCCATTTTTC	c8p95148798ES	ATGATGAGTTCATGTCCTTTGTAG
chr8	96449482	96449802	96380306	96380626	-	62	320	4	L1PA2	"COLO2T,COLO2N"	55	320	L1PA2				c8p96449642FS	CTTGAAGCAGCCTCTTAGTAGAAG	c8p96449642ES	TAGACTGGATTAAGAAAATGTGGC
chr8	96451215	96451545	96382039	96382369	-	470	330	9	L1HS	"COLO2T,COLO2N"	775	228	"L1HS,L1PA2"				c8p96451380FS	TTTTGTATAAGGTGTAAGGAAGGG	c8p96451380ES	GATGAGTTCATATCCTTTGTAGGG
chr8	96509733	96509915	96440557	96440739	-	24	182	5	L1PA3	"COLO2T,COLO2N"	19	283	"L1PA3,MIR"				c8p96509824FS	TGAGATGTAAGAATGCACCTAGTC	c8p96509824ES	CGTATGTTTATTGTGGCACTATTC
chr8	96633307	96633641	96564131	96564465	-	1709	334	6	L1PA2	"COLO2T,COLO2N"	662	268	L1PA2				c8p96633474FS	GTTTCCGACAAGATTCATTTATTC	c8p96633474ES	TCATTCTCAGTAAACTATCGCAAG
chr8	97819740	97819845	97750564	97750669	-	1371	105	8	L1PA3	"COLO2T,COLO2N"	442	100	"L1MEe,AT_rich"		PGCP		c8p97819792FS	ATTTTGTTTGATAGTTCGTTTTGC	c8p97819792ES	CAAATGTCCAACAATGATAGACTG
chr8	97980120	97980582	97910944	97911406	+	895512	462	92	L1HS	"COLO2T,COLO2N"	881740	454	L1HS		PGCP		c8p97980351FS	CAATGTATATGTGAAAATGCATCC	c8p97980351ES	ATAATCAGGTGATTGTGAACTGTG
chr8	98382992	98383148	98313816	98313972	+	297	156	7	L1PA2	"COLO2T,COLO2N"	110	164	"(TAA)n,L1PA2,LTR33"				c8p98383070FS	TGAGAATAGTTTAAGCCAGAAAGG	c8p98383070ES	TTGTCAGTAAACTATCGCAAGAAC
chr8	98597982	98598313	98528806	98529137	+	866	331	9	L1PA2	"COLO2T,COLO2N"	793	286	"(TAAA)n,L1PA2"				c8p98598147FS	TTCTTAGAAGAACCTGTTCCAAAG	c8p98598147ES	CCATCATTGTCAGTAAACTATTGC
chr8	99347647	99347931	99278471	99278755	+	71	284	8	L1PA2	"COLO2T,COLO2N"	49	239	"L1PA2,AluSx"		NPAL2		c8p99347789FS	GTCTCCAAACTCCTTATGGTATTG	c8p99347789ES	GATGAGTTCATATCCTTTGTAGGG
chr8	99388333	99388572	99319157	99319396	-	28	239	6	L1PA2	"COLO2T,COLO2N"	7	115	"T-rich,L1PA2,CT-rich"				c8p99388452FS	GGTTATGAAGAGAGGCATACACTG	c8p99388452ES	ATAGACTGGATTAAGAAAACGTGG
chr8	99785923	99786099	99716747	99716923	+	607	176	3	noL1	COLO2T	0	0			STK3		c8p99786011FS	TAACTTGAAAAACAACAAGGTCAG	c8p99786011ES	AAACAAAAGGCAGTACTTGTTACC
chr8	100048096	100048681	99978920	99979505	-	81	585	9	noL1	"COLO2T,COLO2N"	182	75	"AT_rich,(T)n"				c8p100048388FS	TTTGCCTAATAACCCTAATCTGAC	c8p100048388ES	AGCCTACACATACCCAGATCATAG
chr8	100134470	100134587	100065294	100065411	-	31	117	7	L1PA4	"COLO2T,COLO2N"	19	86	"AT_rich,L1PA4"		VPS13B		c8p100134528FS	AGCCTGTTATTGGTCTATTCAGAG	c8p100134528ES	ATGACAAAAACTGTATGATTCCAC
chr8	100174720	100174827	100105544	100105651	-	68	107	3	L1PA3	"COLO2T,COLO2N"	43	298	"L1PA3,AT_rich"		VPS13B		c8p100174773FS	TTATATTGGTAAAATCAATGGCAC	c8p100174773ES	TGTAGTATTCTCTCAACCCAAATG
chr8	100259189	100259622	100190013	100190446	-	21334	433	36	L1HS	"COLO2T,COLO2N"	21350	612	"L1HS,AT_rich,Eulor2A"		VPS13B		c8p100259405FS	AGAACAGAAAGTTTCCTTTGATTG	c8p100259405ES	AAGTACAAAATGCTATACAAGGGG
chr8	100301679	100302245	100232503	100233069	-	63595	566	29	L1HS	"COLO2T,COLO2N"	70576	539	"L1HS,MLT1K"		VPS13B		c8p100301962FS	TTGGTAGTTGTCATTGTTTGTTTC	c8p100301962ES	TGGGAGATATACCTAATGCTAGATG
chr8	100559437	100559913	100490261	100490737	-	25	476	3	noL1	"COLO2T,COLO2N"	6	65	"MIRb,FLAM_A,AluSq"		VPS13B		c8p100559675FS	GACACTGTGTATATTTATCTGGGTTG	c8p100559675ES	AAACGCCGTCTGTACTAAAAATAC
chr8	100655516	100655816	100586340	100586640	-	12	300	3	noL1	"COLO2T,COLO2N"	13	300	L1PA5		VPS13B		c8p100655666FS	TTGAATCTATAAATTACCTTGGGC	c8p100655666ES	CTTTATGTATTCCCAGCTTTCATC
chr8	101939586	101940064	101870410	101870888	+	18	478	3	noL1	"COLO2T,COLO2N"	19	440	"L3b,L1PA4"				c8p101939825FS	TGAGTTGAGGCAAACTATTGTATC	c8p101939825ES	AGCACTATTCACAATAGCAAAGAC
chr8	102679194	102679579	102610018	102610403	+	109	385	7	L1PA4	"COLO2T,COLO2N"	93	329	"L1PA4,MER53"		GRHL2		c8p102679386FS	CTAAAAATATAAAAATTAGCCGGG	c8p102679386ES	ATGATGAGTTCATGTCCTTTGTAG
chr8	104788012	104788200	104718836	104719024	-	9274	188	18	noL1	"COLO2T,COLO2N"	12860	250	L1MA4		RIMS2		c8p104788106FS	TCCCCATTTAGTTTTTGTTATCTC	c8p104788106ES	AAAGAAATGCATTAGAATGTCTCC
chr8	105820936	105821303	105751760	105752127	-	4413	367	24	L1HS	"COLO2T,COLO2N"	4566	367	"L2a,L1HS,(TTTTTA)n"				c8p105821119FS	CTTTATGTCTTTTGTTCACCACTG	c8p105821119ES	TCATTCTCAGTAAACTATCGCAAG
chr8	106389065	106389182	106319889	106320006	-	82	117	5	L1PA3	"COLO2T,COLO2N"	59	116					c8p106389123FS	AGATTAGACACATTCTCCTGGAAG	c8p106389123ES	ACACTGCATATTCTCACTCATAGG
chr8	107449609	107449870	107380433	107380694	-	78	261	2	L1PA8A	"COLO2T,COLO2N"	82	261	"(TTTTA)n,L1PA8A"		OXR1		c8p107449739FS	CAGGAACTGAGCTTAGAGAGGTAG	c8p107449739ES	AACTGCAGACTGGATAAAGAAATC
chr8	108139214	108139361	108070038	108070185	-	68	147	2	L1PA3	"COLO2T,COLO2N"	19	160	L1PA3				c8p108139287FS	ACAAAGGGGTTAGTGTTAAAAATG	c8p108139287ES	ATAGACTGGGTTAAGAAAATGTGG
chr8	108328072	108328289	108258896	108259113	+	19	217	3	L1PA3	"COLO2T,COLO2N"	21	435	AT_rich				c8p108328180FS	AAGAAAGCAAGTTAATGGAGTCAG	c8p108328180ES	ATGATGAGTTCATGTCCTTTGTAG
chr8	109141389	109141768	109072213	109072592	+	699	379	15	L1PA3	"COLO2T,COLO2N"	700	398	"L1PA3,L1PA5"		RSPO2		c8p109141578FS	ATAATATCCTGCAGAGTGTTTTCC	c8p109141578ES	AACACCACACATTCTCATTCATAG
chr8	109184711	109184867	109115535	109115691	+	14	156	2	noL1	"COLO2T,COLO2N"	6	168					c8p109184789FS	CCTCATAGTTTTCCTTTGCTAGG	c8p109184789ES	GCAGAAGCTTTAAGAACATAAAATG
chr8	109343734	109343970	109274558	109274794	-	2197	236	10	noL1	COLO2T	0	0	L2c				c8p109343852FS	GTGTGTGTAGGAATTCAGAGATTG	c8p109343852ES	CAATTGCAGATGTTAACGAATAAG
chr8	109783717	109784077	109714541	109714901	+	113	360	2	L1PA4	"COLO2T,COLO2N"	139	361	"L1MC,L1PA4,AluSx3"		TMEM74		c8p109783897FS	CCTACCCACTCACTGTTTATTACC	c8p109783897ES	ATCAAGATCATATGGTTGGTATTG
chr8	111653793	111654082	111584617	111584906	+	462	289	4	noL1	COLO2T	0	0	T-rich				c8p111653937FS	TATTGGCAAGTATTGATGATTTTG	c8p111653937ES	GAAAAATGTTTCCCCTGATAAAAC
chr8	112566839	112567093	112497663	112497917	+	10	254	3	L1PA4	COLO2T	0	0	"(GAAA)n,L1PA4"				c8p112566966FS	TGTATTGTTTGGATTACATTGGTG	c8p112566966ES	AAAAAGCAAACTATTGCAAGGAC
chr8	113745145	113745258	113675969	113676082	+	22	113	2	L1PA3	"COLO2T,COLO2N"	22	556			CSMD3		c8p113745201FS	TTGGAACAATAGGACAAAGATTTC	c8p113745201ES	CTCACTTATAGGTGGGAATTGAAC
chr8	114141055	114141452	114071879	114072276	-	14674	397	17	L1HS	"COLO2T,COLO2N"	11254	397	L1HS		CSMD3		c8p114141253FS	TTCCATGCTAATATTTTCACAAAC	c8p114141253ES	GATGAGTTCATATCCTTTGTAGGG
chr8	114533896	114534597	114464720	114465421	+	1799	701	19	L1HS	"COLO2T,COLO2N"	468	701	"MLT1N2,L1HS,(A)n,MLT2B3"				c8p114534246FS	AAGAATTCAACAAGGTGCTTATTC	c8p114534246ES	TAATGCTAGATGACACGTTAGTGG
chr8	114599205	114599542	114530029	114530366	-	124	337	9	L1PA4	"COLO2T,COLO2N"	46	224	"L1PA4,MER50"				c8p114599373FS	TATTGTTGCAGCTGGTACTTAGAG	c8p114599373ES	GTTCTCAGCAAACTATCACAAGG
chr8	114690684	114691028	114621508	114621852	-	954	344	9	L1PA2	"COLO2T,COLO2N"	979	232	L1PA2				c8p114690856FS	GTTGGATTTGTTCTCTTATCCTTG	c8p114690856ES	GATAAGTTCATGTCCTTTGTAGGG
chr8	114756374	114757057	114687198	114687881	+	2797	683	27	L1PA2	"COLO2T,COLO2N"	8030	688	"L1PA11,L1PA2"				c8p114756715FS	TACTTCCCTGGTTAGCTGTATTTC	c8p114756715ES	TAATGCTAGATGACACGTTAGTGG
chr8	115250195	115250509	115181019	115181333	+	42	314	7	L1PA3	"COLO2T,COLO2N"	77	314	L1PREC2				c8p115250352FS	TCAATAATCATGTCAGGTTGTTTC	c8p115250352ES	TCATTCTCAGTAAACTATCGCAAG
chr8	115258284	115258684	115189108	115189508	-	1107	400	13	L1PA2	"COLO2T,COLO2N"	697	413	"LTR80B,L1PA2"				c8p115258484FS	TCTTTTCTGTCTGTGAATAGCATC	c8p115258484ES	TCATTCTCAGTAAACTATCGCAAG
chr8	115950937	115951149	115881761	115881973	+	8709	212	10	noL1	"COLO2T,COLO2N"	4945	90	L2a	"LINE:Ewing,Stewart"			c8p115951043FS	CCTCTCTCATTTCCAATGTAGTTC	c8p115951043ES	ATACTTCTTCAGCCTTTGCAATAC
chr8	116019116	116019308	115949940	115950132	-	544	192	4	noL1	COLO2T	0	0	"MLT1E1A,MIRc"				c8p116019212FS	AATAACAAAAAGGAAGGAAGGAAG	c8p116019212ES	ACTCATGTTGTGAATTGTCTATGG
chr8	116680595	116680795	116611420	116611620	-	104	200	5	L1PA8	"COLO2T,COLO2N"	63	76	"L1PA8,L1ME3F"		TRPS1		c8p116680695FS	ATAAAAAGTCTGCCAACCTAAATG	c8p116680695ES	AAACTAACACAGGAACAGAAAACC
chr8	117097203	117097441	117028025	117028263	-	25	238	2	noL1	"COLO2T,COLO2N"	21	67	L1MCa				c8p117097322FS	AAAATGCTTTGGTACTATTTTTGC	c8p117097322ES	ATAGAAAAGAATCACATGGAAACG
chr8	119790567	119790841	119721386	119721660	-	162	274	5	noL1	"COLO2T,COLO2N"	1896	125		"LINE:dbRIP,Ewing,Iskow,Stewart"			c8p119790704FS	CAGCACCCTTAATCTTACTTTAGC	c8p119790704ES	AACTATGCCTTTGACTACAGAACC
chr8	120388098	120388351	120318917	120319170	+	13	253	2	L1PA2	"COLO2T,COLO2N"	7	220	"L1MA8,L1PA2,L1PA6"				c8p120388224FS	GGATGGTTTGTTTACCTACTCAAG	c8p120388224ES	AAAAACCAAACACCACATATTCTC
chr8	121213973	121214669	121144792	121145488	+	14	696	4	noL1	"COLO2T,COLO2N"	28	71	"AluSz6,AluYg6,L1PA16"		COL14A1		c8p121214321FS	TTTTATTATGCTGTGTCAAGTTTTG	c8p121214321ES	TTTCTGTGTGTTTGTTTTTGTACC
chr8	121310352	121310561	121241171	121241380	-	22	209	6	L1PA3	"COLO2T,COLO2N"	15	125	"(TTTTA)n,L1PA3"		COL14A1		c8p121310456FS	ATTTCTTTCGTCTTCTAACCATTG	c8p121310456ES	TCATTCTCAGTAAACTATCGCAAG
chr8	121435771	121435891	121366590	121366710	+	29	120	3	L1PA2	"COLO2T,COLO2N"	4	68	L1PA2		COL14A1		c8p121435831FS	ATAAAGCATGATGTTATGCAAATG	c8p121435831ES	CAAATGTCCAACAATGATAGACTG
chr8	122106002	122106227	122036821	122037046	-	94	225	6	L1PA4	"COLO2T,COLO2N"	221	299					c8p122106114FS	CTAAGAGAGAAGGACACAAAGTCC	c8p122106114ES	AATGCTAAATGACAAGTTAATGGG
chr8	123180340	123180536	123111159	123111355	+	27	196	4	L1PA2	"COLO2T,COLO2N"	8	196	"L2a,L1PA2"	LINE:Ewing	BC052578		c8p123180438FS	AGGATCTATTATCCTGGATTTTCC	c8p123180438ES	ATTATTCTTGGATTTGAGGACAAG
chr8	123560910	123561126	123491729	123491945	+	10205	216	14	noL1	"COLO2T,COLO2N"	7780	216	"AluYc,L1MA7"				c8p123561018FS	CTATGAGCTTGACACTGATCTAGG	c8p123561018ES	GTTTTGCTTGATAACTCCTCTCAC
chr8	123745010	123745118	123675829	123675937	+	24	108	3	L1PA2	"COLO2T,COLO2N"	25	356	"(GAAA)n,L2c"				c8p123745064FS	GTAGAGCATCATATGTGTACAGGG	c8p123745064ES	TAATGCTAGATGACGAGTTAGTGG
chr8	123849639	123849763	123780458	123780582	+	90	124	7	L1PA7	"COLO2T,COLO2N"	276	73	"L1MD2,L1PA7"				c8p123849701FS	TTTTTGAGATGGAGTCTTGCTC	c8p123849701ES	TCACAATAGCAAAGACTTGGAAC
chr8	124940924	124941393	124871743	124872212	-	273	469	9	L1PA2	"COLO2T,COLO2N"	172	451	"L1PA2,(TTA)n,L1MA7"		FER1L6		c8p124941158FS	AGCAACTTTGAATTCCAGTCTAAC	c8p124941158ES	ACACCGCATATTCTCACTCATAG
chr8	125854018	125854289	125784837	125785108	-	21	271	3	L1PA5	"COLO2T,COLO2N"	4	273	L1PA5				c8p125854153FS	CTATTCAGGATGATCAGCAATATC	c8p125854153ES	GCACTTGACAAAACATACTCAAAG
chr8	125956364	125956484	125887183	125887303	-	159	120	6	L1PA3	"COLO2T,COLO2N"	152	120	"L1P4,(TTA)n"				c8p125956424FS	TCCTTGTTAAGATCTTTCATCTCC	c8p125956424ES	TACACTATGGAATACTATGCAGCC
chr8	125990150	125990529	125920969	125921348	+	176	379	16	L1PA2	"COLO2T,COLO2N"	166	77	"L1PA2,HERVIP10FH-int"				c8p125990339FS	TCTACAAAAGGCCCTATCACTTAC	c8p125990339ES	TCATTCTCAGTAAACTATCGCAAG
chr8	126565081	126565268	126495899	126496086	-	463	187	9	L1PA3	"COLO2T,COLO2N"	181	187	L1PA3				c8p126565174FS	AAAAATACAAAAATTAGCCTGGTG	c8p126565174ES	CAAATGTCCAACAATGATAGACTG
chr8	126670252	126670711	126601070	126601529	+	7020	459	29	L1HS	"COLO2T,COLO2N"	4185	373	"L1HS,MER113"	LINE:dbRIP			c8p126670481FS	ACGAGAACTGAAGTTGTCTTATCC	c8p126670481ES	TCATTCTCAGTAAACTATCGCAAG
chr8	126750103	126750650	126680921	126681468	-	9344	547	12	L1HS	"COLO2T,COLO2N"	6245	544	"L1HS,AT_rich"				c8p126750376FS	ACTTGGTACTTCTTATTTTGCAGG	c8p126750376ES	ACACCGCATATTCTCACTCATAG
chr8	127394228	127394723	127325046	127325541	-	11	495	4	L1PA2	"COLO2T,COLO2N"	8	494	"L1PA2,(T)n,MSTC"				c8p127394475FS	TCTCCCAAGTCTCAATAAAAAGAG	c8p127394475ES	TCATTCTCAGTAAACTATCGCAAG
chr8	127428995	127429255	127359813	127360073	+	27	260	3	L1PA3	"COLO2T,COLO2N"	15	250	"L1PA3,L1PB2"				c8p127429125FS	CAGGTTTGTTCTTTTTGCTTAGTC	c8p127429125ES	AACAATGAGAACACATGGACATAG
chr8	127563869	127563998	127494687	127494816	+	693	129	13	L1PA4	"COLO2T,COLO2N"	582	99	L1PA4				c8p127563933FS	TAACAATGATACAATGGACTTTGG	c8p127563933ES	CCTTGGTCTCTAGAGTTTTCTCTG
chr8	128317122	128317235	128247940	128248053	-	34	113	8	L1PA5	"COLO2T,COLO2N"	22	113	"L1PA5,LTR16A"				c8p128317178FS	TTTGAATTATCCAAGTGTCAAATG	c8p128317178ES	ATTCACAATAGCAAAGACTGGAAC
chr8	128982988	128983919	128913806	128914737	-	11	931	5	L1PA16	"COLO2T,COLO2N"	32	322	"MER81,AluJo,FLAM_C,L1PA16"		PVT1		c8p128983453FS	AAAAGCTGACATAAATGAACAAGG	c8p128983453ES	ACCAAGTATACACAATGACAGCAC
chr8	129432219	129432339	129363037	129363157	-	42	120	4	L1PA2	"COLO2T,COLO2N"	31	116	"L1ME3B,L1PA2"				c8p129432279FS	GAAGTGCACAAATTATAAATACGC	c8p129432279ES	AGTTAAGCACTTCAGCATAGCAC
chr8	129534221	129534465	129465039	129465283	-	477	244	32	L1HS	"COLO2T,COLO2N"	923	116	"L1HS,(T)n,MIRb"	LINE:dbRIP			c8p129534343FS	CTCACATCTAGTGTGGTATCAACC	c8p129534343ES	GATGAGTTCATATCCTTTGTAGGG
chr8	130993857	130994452	130924675	130925270	-	11	595	5	noL1	"COLO2T,COLO2N"	8	70	"L1ME1,FLAM_A,AluY"		"BM009,FAM49B"		c8p130994154FS	GTACCACTCTCTCCACCTCTAGTC	c8p130994154ES	GATCATGAGGTCAGAAGTTCAAG
chr8	133741554	133741710	133672372	133672528	-	22	156	3	L1HS	"COLO2T,COLO2N"	1	65	L1HS		LRRC6		c8p133741632FS	ATTATCCACGAAACTAGAAGCAAC	c8p133741632ES	GCTCAGTTTCTTCTCCTGATTAAC
chr8	134958105	134958393	134888923	134889211	-	1383	288	12	noL1	"COLO2T,COLO2N"	225	291	L1MB2				c8p134958249FS	TTTTCTATAGGTCTGGCTTTATGC	c8p134958249ES	AATAACAAGTTCTGAAACTGAGGC
chr8	135151649	135152210	135082467	135083028	-	448716	561	161	L1HS	"COLO2T,COLO2N"	283741	561	"L1MEe,L1HS"	LINE:dbRIP			c8p135151929FS	AAATTTGTTCTGTCTCTCGACTTC	c8p135151929ES	ACACCGCATATTCTCACTCATAG
chr8	135235395	135235667	135166213	135166485	-	8906	272	6	L1PA4	"COLO2T,COLO2N"	7125	452	"L1PA4,L1PA7"				c8p135235531FS	CAATAAAGCCAAGCTCTTTTATTC	c8p135235531ES	TGATGAGTTCATGTTCTTTGTAGG
chr8	135498949	135499462	135429767	135430280	+	42346	513	56	L1HS	"COLO2T,COLO2N"	37593	555	"L1PREC2,L1HS,(A)n"				c8p135499205FS	ATTATTGTCCACATGTGTGTCTTC	c8p135499205ES	TCATTCTCAGTAAACTATCGCAAG
chr8	136963270	136963763	136894088	136894581	+	15983	493	46	L1HS	"COLO2T,COLO2N"	8927	658	L1HS				c8p136963516FS	GTGAGTCCATTAAAGCTCTTTTTC	c8p136963516ES	ACACTGCATATTCTCACTCATAGG
chr8	136964349	136965088	136895167	136895906	-	58	739	2	noL1	"COLO2T,COLO2N"	26	924	MIRb				c8p136964718FS	TAATCTTGTTCAAGAGAAGAAGCC	c8p136964718ES	AAGACAGAAAAGTACCTGGAATTG
chr8	136965081	136965316	136895899	136896134	-	20	235	5	L1PA3	"COLO2T,COLO2N"	26	924	"L1PA3,AT_rich"				c8p136965198FS	CTTCATAATGGAGATTTAGCCTTG	c8p136965198ES	TCATCATTCTCAGTAAACTATCGC
chr8	137036834	137037099	136967652	136967917	+	6634	265	19	L1HS	"COLO2T,COLO2N"	11397	459	"L1HS,AT_rich"				c8p137036966FS	AGACTCCTCAGTTGATCCTGATAC	c8p137036966ES	CAAATGTCCAACAATGATAGACTG
chr8	137519120	137519562	137449938	137450380	-	452	442	11	L1HS	"COLO2T,COLO2N"	184	442	"L1HS,AluSc"				c8p137519341FS	CCCATATTTCTTCATTAGTTCCAC	c8p137519341ES	GATGAGTTCATATCCTTTGTAGGG
chr8	138325660	138325933	138256478	138256751	+	3408	273	29	L1HS	"COLO2T,COLO2N"	2020	274	L1HS				c8p138325796FS	CTTATCAGCTTAAGGAGATTTTCG	c8p138325796ES	TATTCCAATCAATAGGAAAAGAGG
chr8	139203572	139203842	139134390	139134660	+	63	270	6	L1PA2	"COLO2T,COLO2N"	30	70	L1PA2				c8p139203707FS	GTCTACATCACTTGACCCTACCTC	c8p139203707ES	TCATTCTCAGTAAACTATCGCAAG
chr8	139619202	139619436	139550020	139550254	+	46	234	4	L1PA4	"COLO2T,COLO2N"	49	176	"L1PA4,MIRb"				c8p139619319FS	CTCCACTCTCAGTTTGTGTTTATG	c8p139619319ES	ATCCTACTCCATTGATTTGGTAAG
chr8	140519447	140519608	140450265	140450426	+	1347	161	6	noL1	COLO2T	0	0	L1M4				c8p140519527FS	ATTGACAGTTTTTGTGTGATGAAC	c8p140519527ES	ATGCACATTGAATAATACATCCTG
chr8	141372738	141373375	141303556	141304193	+	29	637	5	L1PA3	"COLO2T,COLO2N"	8	207	"L1PA3,(TTAA)n,MIRb"		TRAPPC9		c8p141373056FS	AGAGTGTAGGTTTTGGAGACAGAC	c8p141373056ES	TCAGGGATCTAGAACCAGAAATAC
chr8	141576253	141576753	141507071	141507571	-	133	500	7	L1PA3	"COLO2T,COLO2N"	19	258	"AluJb,L1PA3,AluSq2"				c8p141576503FS	AAGTAATTTATGGGAGTAAGCTGG	c8p141576503ES	AATGCTAAATGACAAGTTAATGGG
chr8	141980928	141981358	141911746	141912176	-	19	430	8	L1PA7	"COLO2T,COLO2N"	60	71	"AluSx,L1PA7,AluJr4"		"DKFZp666O0110,PTK2"		c8p141981143FS	GACAACGGATTAATAACCAGAATC	c8p141981143ES	GACTGGATAAAGAAAATATGGTGG
chr9	517688	517838	527688	527838	-	56	150	2	noL1	"COLO2T,COLO2N"	53	74	HAL1		KANK1		c9p517763FS	GTTTGTTTGTTTGTTTTTGAAATG	c9p517763ES	ACATTAAGTTCCCAGTTTGAGAAG
chr9	1327650	1328049	1337650	1338049	-	32727	399	26	L1HS	"COLO2T,COLO2N"	35531	413	"L1HS,MIR3"				c9p1327849FS	TCTTAAGTAGGAATCAGTTTTGCC	c9p1327849ES	TCATTCTCAGTAAACTATCGCAAG
chr9	1558709	1559075	1568709	1569075	-	5881	366	19	L1PA3	"COLO2T,COLO2N"	6886	389	"L1MA9,L1PA3,(TTTG)n"				c9p1558892FS	TTCTATGTTGTGTCAATTCATTCC	c9p1558892ES	TCATTCTCAGTAAACTATCGCAAG
chr9	2212940	2213130	2222940	2223130	+	13	190	2	L1PA4	"COLO2T,COLO2N"	3	66	"L1PA4,MSTA"				c9p2213035FS	GTGATATAGTTTGGATGTGTGTCC	c9p2213035ES	CAAATGTCCAACAATGATAGACTG
chr9	3388879	3388983	3398879	3398983	+	28	104	5	L1HS	"COLO2T,COLO2N"	39	92	L1HS		RFX3		c9p3388931FS	CATAGTAGCTGGGATTACAGGTG	c9p3388931ES	ATCATCTTCTGTGAGGTCTTTTTC
chr9	4023816	4024230	4033816	4034230	+	910	414	5	noL1	"COLO2T,COLO2N"	1544	70	"AluJb,(A)n"		GLIS3		c9p4024023FS	TCTCCTTAATTAACATATCCCTGC	c9p4024023ES	TTAAAGTGTTTTCCAAATAGGAGC
chr9	5013628	5013799	5023628	5023799	-	34191	171	21	noL1	"COLO2T,COLO2N"	34233	263	L1M2	LINE:Iskow	JAK2		c9p5013713FS	ATTTCACTCGACATAATGACCTTC	c9p5013713ES	GAGATGAGGTTTCACCATATTAGC
chr9	5229550	5229843	5239550	5239843	-	60	293	10	L1HS	"COLO2T,COLO2N"	338	499	"L1HS,L1MB4"				c9p5229696FS	ATTTTAGGCAGAAAAATCAGTGAG	c9p5229696ES	TCATTCTCAGTAAACTATCGCAAG
chr9	5481399	5481845	5491399	5491845	+	29163	446	31	L1PA5	"COLO2T,COLO2N"	14033	472	MIR	"LINE:Ewing,Iskow,Stewart"	C9orf46		c9p5481622FS	ACTGGCTTCTAGGACTTTATATGG	c9p5481622ES	ACCATTATATCAGAATGTGTCCAG
chr9	5527821	5528097	5537821	5538097	+	28	276	6	L1PA4	"COLO2T,COLO2N"	150	224	"Charlie2b,L1PA4"		"PDCD1LG2,C9orf46"		c9p5527959FS	AAGAATATGTATGAAACATGCTGG	c9p5527959ES	TAAATGTCCAACAACGATAGACTG
chr9	5955019	5955410	5965019	5965410	+	39	391	6	L1PA2	"COLO2T,COLO2N"	90	393	"L1PA2,MER103C,MER46C"		KIAA2026		c9p5955214FS	ATAATGTTTAAGTCATCCCCAGTG	c9p5955214ES	TCATTCTCAGTAAACTATCGCAAG
chr9	6280490	6281051	6290490	6291051	+	6260	561	17	noL1	"COLO2T,COLO2N"	5470	573	"(CA)n,L2b"	"LINE:Ewing,Iskow"			c9p6280770FS	GAAAACAAAAACAAAAACAAAAAC	c9p6280770ES	TATGATTCCAACCATATGACATTC
chr9	6677802	6678490	6687802	6688490	-	11	688	2	noL1	"COLO2T,COLO2N"	9	65	"AluJb,AluSx1"				c9p6678146FS	TCTGTAAAAACAGGAGTCTCACAG	c9p6678146ES	CTATTTTGCCTTTCTGACATTTG
chr9	7013680	7014278	7023680	7024278	-	240	598	3	L1PA4	"COLO2T,COLO2N"	247	189	L1M1		JMJD2C		c9p7013979FS	AGAGGTTTGTCAGTTTTGTTTTTC	c9p7013979ES	TAATGCTAAATGACAGGTTAATGG
chr9	7656990	7657290	7666990	7667290	-	115	300	7	L1PA2	"COLO2T,COLO2N"	53	68	"L1PA2,MLT2D"				c9p7657140FS	GCATGATGGTTAGTTTTATGTGTC	c9p7657140ES	AACTAGAAATACCATTTGACCCAG
chr9	8853099	8853252	8863099	8863252	+	93	153	3	L1PA3	"COLO2T,COLO2N"	865	173			PTPRD		c9p8853175FS	CTGAAATCCACTGCTTAATGTATG	c9p8853175ES	TCCTCTTTAAGAAAAGAAATCCAC
chr9	9226611	9226904	9236611	9236904	+	2842	293	12	noL1	"COLO2T,COLO2N"	1894	213	MER34B-int		PTPRD		c9p9226757FS	TCCAACTAAGAAGGAAATCAAAAG	c9p9226757ES	ATGGACACAAAGGAGTATAAAAGC
chr9	9476939	9477529	9486939	9487529	-	178	590	5	L1PA4	"COLO2T,COLO2N"	226	816	"AT_rich,L1PA4"		PTPRD		c9p9477234FS	TCTCTTGAAATGTAGTATTTCCCC	c9p9477234ES	TGAGAGTGCAAATGAAAAACTAAG
chr9	10127663	10128152	10137663	10138152	+	207526	489	63	L1HS	"COLO2T,COLO2N"	370980	553	"L1HS,L1PA16"	LINE:dbRIP	PTPRD		c9p10127907FS	CTCTGGATTTCCTACTTTGTATGG	c9p10127907ES	TCATTCTCAGTAAACTATCGCAAG
chr9	10715813	10716013	10725813	10726013	-	788	200	33	L1PA3	"COLO2T,COLO2N"	502	189	"(CA)n,CT-rich"				c9p10715913FS	CCAGTACCTACTAGCAATTTGAGG	c9p10715913ES	TCATTCTCAGTAAACTATCGCAAG
chr9	10835390	10835655	10845390	10845655	-	26	265	4	L1PA3	"COLO2T,COLO2N"	28	115	L1MEc				c9p10835522FS	TGTTTTTCCCTATTTTCTGTTTTC	c9p10835522ES	AAATCATCATTCTCAGCAAACTATC
chr9	11131253	11131378	11141253	11141378	+	25	125	4	noL1	COLO2T	0	0					c9p11131315FS	AGTGGACACAAGAATAAAAGGAAG	c9p11131315ES	CAGACAATCACTCAAAATGGTAAG
chr9	11589330	11589595	11599330	11599595	+	14	265	2	noL1	"COLO2T,COLO2N"	21	65	"(A)n,AluY"				c9p11589462FS	GGCAGAGAGTAATTTTCTTGTTTC	c9p11589462ES	AGTAAAAGGTTCCAGATACACTGC
chr9	12229397	12229928	12239397	12239928	+	13	531	2	L1PA4	"COLO2T,COLO2N"	9	65	"MER31-int,(T)n"				c9p12229662FS	AGAGTAAACATGCTTTTGGGATAG	c9p12229662ES	ACTGAACAATGAGAACACATGGAC
chr9	12546609	12546920	12556609	12556920	-	30304	311	21	L1HS	"COLO2T,COLO2N"	17897	322	"T-rich,MER49"	LINE:dbRIP			c9p12546764FS	TCTCTTGTCCAATCATAGCTGTAG	c9p12546764ES	TCATTCTCAGTAAACTATCGCAAG
chr9	14038355	14038808	14048355	14048808	+	26	453	4	L1PA3	"COLO2T,COLO2N"	98	91	"L1PA3,AT_rich,L1PA4"				c9p14038581FS	ATTGTTTGGAATGGGAGAAAATAC	c9p14038581ES	TGGAAATCATCATTCTCAGTAAAC
chr9	15317293	15317454	15327293	15327454	+	58	161	7	L1PA2	"COLO2T,COLO2N"	13	116	"THE1B,L1PA2"				c9p15317373FS	CTTTTGAGTTAATGCTGAAATGAG	c9p15317373ES	CAAATGTCCAACAATGATAGACTG
chr9	16056229	16056509	16066229	16066509	-	35	280	3	L1PA2	"COLO2T,COLO2N"	17	305	L1PA2				c9p16056369FS	GTGACTATCTTAGAATCCAGGAGG	c9p16056369ES	TCATTCTCAGTAAACTATCGCAAG
chr9	16457793	16458421	16467793	16468421	+	1117	628	25	L1HS	"COLO2T,COLO2N"	1209	628	"AluJb,L1HS,MIR,AluSc"		"DKFZp686A01127,BNC2"		c9p16458107FS	ACTAAAAATACAAAAAGTAGCCAGG	c9p16458107ES	TAATGCTAGATGACACGTTAGTGG
chr9	17274788	17275285	17284788	17285285	-	14	497	3	L1PA2	"COLO2T,COLO2N"	10	572	"L1PA10,L1PA2"		CNTLN		c9p17275036FS	CTGAAGGTTGTTTGTATTTCTGTG	c9p17275036ES	CGTATGTTTATTGTGGCATTATTC
chr9	17722957	17723313	17732957	17733313	-	754	356	12	L1PA3	"COLO2T,COLO2N"	328	363	"L1PA3,AT_rich,MIR3"		SH3GL2		c9p17723135FS	TATAGGCAAAGGAAGGAGATTATG	c9p17723135ES	TAGTTCTAGATCCCTGAGGAATTG
chr9	17769995	17770531	17779995	17780531	-	1410485	536	105	L1HS	"COLO2T,COLO2N"	1633678	628	"L1ME3A,L1HS,MER5B"		SH3GL2		c9p17770263FS	TTTTCAGTCTAGAGACGAACACAG	c9p17770263ES	TTCTCAGTAAACTATCGCAAGAAC
chr9	17915988	17916111	17925988	17926111	+	20	123	2	L1PA2	"COLO2T,COLO2N"	6	213					c9p17916049FS	TGGAAGTATTTATTTAGAGCAGCAC	c9p17916049ES	TCATTCTCAGTAAACTATCGCAAG
chr9	18301290	18301731	18311290	18311731	+	18	441	10	L1PA7	"COLO2T,COLO2N"	40	160	"L2b,L1PA7"				c9p18301510FS	ATATGTAATTGTCTGTGCCTTTCC	c9p18301510ES	TGAACTATGAGAACAGATGGACAC
chr9	18707259	18707519	18717259	18717519	+	54	260	5	L1PA3	"COLO2T,COLO2N"	108	260	"(TAA)n,L1PA3"		ADAMTSL1		c9p18707389FS	TACCAGCATCTTAAATGGACTTTC	c9p18707389ES	TCATTCTCAGTAAACTATCGCAAG
chr9	19526021	19526213	19536021	19536213	-	1868	192	11	L1PA2	"COLO2T,COLO2N"	503	159	"L1PA2,AT_rich,L1PA7"		SLC24A2		c9p19526117FS	TTTGTCAGGTTTGTCAAAGATTAG	c9p19526117ES	TCATTCTCAGTAAACTATCGCAAG
chr9	19900569	19900938	19910569	19910938	-	70	369	6	L1PA3	"COLO2T,COLO2N"	56	355	"L1PA3,L2,(TTTTC)n"				c9p19900753FS	TTAATCACCTTTTGTTCATCAGTG	c9p19900753ES	TCATTCTCAGTAAACTATCGCAAG
chr9	20605340	20605894	20615340	20615894	+	11	554	5	noL1	"COLO2T,COLO2N"	4	77	"AluJb,Charlie1b,MIRb"		MLLT3		c9p20605617FS	TTACACTTACAAATTGAAGAACGC	c9p20605617ES	AACATAGTGAAACCCCATCTCTAC
chr9	20756655	20756776	20766655	20766776	-	111	121	9	L1PA2	"COLO2T,COLO2N"	63	146	CT-rich		KIAA1797		c9p20756715FS	ATCTGTGGCTTTTTAACCTAACAG	c9p20756715ES	TCATTCTCAGTAAACTATCGCAAG
chr9	22477618	22478073	22487618	22488073	-	132	455	9	noL1	"COLO2T,COLO2N"	405	450	"T-rich,L1PA3"				c9p22477845FS	GTCATTCCTAAGTGTTCTCAATCC	c9p22477845ES	CACAAAGGACTATAAATCATGCTG
chr9	22748966	22749637	22758966	22759637	-	15	671	2	noL1	"COLO2T,COLO2N"	2	65	L1PA5		AX747623		c9p22749301FS	GACCAAGGAAACATAACAGAAATC	c9p22749301ES	ATAAGAGCTGTTTATGACAAACCC
chr9	22940588	22940713	22950588	22950713	-	357	125	7	L1PA3	"COLO2T,COLO2N"	249	131					c9p22940650FS	TCTAAAATTGTCAAGCTCACAAAG	c9p22940650ES	TCATTCTCAGTAAACTATCGCAAG
chr9	23769927	23770043	23779927	23780043	+	55	116	8	noL1	"COLO2T,COLO2N"	10	66	(A)n		ELAVL2		c9p23769985FS	AATTGAAAATATGCTTAAAAAGCC	c9p23769985ES	AACTCACCATTCTTTGCTATTCTC
chr9	24059135	24059393	24069135	24069393	+	69	258	6	L1PA3	"COLO2T,COLO2N"	189	258					c9p24059264FS	TTAGGAGGAGTAAATTAAAGTGCC	c9p24059264ES	TCATTCTCAGTAAACTATCGCAAG
chr9	25121469	25121917	25131469	25131917	+	45	448	6	L1PA5	COLO2T	0	0	L1PA5				c9p25121693FS	GTAATGGATTGGCTGTACAGTATG	c9p25121693ES	AACTAGAAATACCATTTGACCCAG
chr9	25154017	25154256	25164017	25164256	+	19	239	3	noL1	COLO2T	0	0	L1MC				c9p25154136FS	ATCATGATGCAATATGTTGAAAAG	c9p25154136ES	TAAGGCCAGCATTACCTTAATATC
chr9	27875961	27876125	27885961	27886125	+	607	164	8	noL1	COLO2T	0	0					c9p27876043FS	AGATAGAGACCATCCTGGCTAAC	c9p27876043ES	CACAAACAAACACTAGCAAAGAAG
chr9	28101586	28101913	28111586	28111913	-	36655	327	14	L1HS	"COLO2T,COLO2N"	45409	339	L1HS		LINGO2		c9p28101749FS	GCACATGTATCCCAGAAGTTAAAG	c9p28101749ES	GATGAGTTCATATCCTTTGTAGGG
chr9	28398714	28399006	28408714	28409006	+	25	292	7	L1PA4	"COLO2T,COLO2N"	55	386	L1PA4		LINGO2		c9p28398860FS	TGTGAAGTGGGTGTTAAAATTATG	c9p28398860ES	TCCAGAGGATTATGCTTTTATTTC
chr9	29281836	29282188	29291836	29292188	-	1350	352	9	L1PA15	"COLO2T,COLO2N"	980	408	"L1M2,L1PA15"				c9p29282012FS	ACCACCAAGTTAGTTAACACATCC	c9p29282012ES	TCATTCTCAGTAAACTATCGCAAG
chr9	29296897	29297104	29306897	29307104	+	278	207	8	L1PA2	"COLO2T,COLO2N"	123	143	"AT_rich,LTR16A"				c9p29297000FS	AAGAGAAAGTGATAGAGGGTTGTG	c9p29297000ES	TCATTCTCAGTAAACTATCGCAAG
chr9	32076746	32077044	32086746	32087044	+	73	298	8	L1PA2	"COLO2T,COLO2N"	70	298	"L1PA2,HAL1b,AT_rich"				c9p32076895FS	ATTACTGACAAGGTGTACCAGTCC	c9p32076895ES	TCTTGAATACTTACATCCAAAGGG
chr9	32082271	32082770	32092271	32092770	-	393501	499	78	noL1	"COLO2T,COLO2N"	304385	526	AluSq	LINE:Ewing			c9p32082520FS	TCCCAGATCTGCTCACTATATTTC	c9p32082520ES	ACAAAACAAAACAAAATTAGCTGG
chr9	32214743	32215104	32224743	32225104	-	259872	361	27	L1PA3	"COLO2T,COLO2N"	259396	646	"L1PA3,L1PA4"				c9p32214923FS	CTTAAAATGTTTCTTGTGCTGAAC	c9p32214923ES	TCATTCTCAGTAAAGTATCGCAAG
chr9	32311581	32311757	32321581	32321757	+	15	176	2	noL1	"COLO2T,COLO2N"	8	65					c9p32311669FS	TTTCCTACTCATCCTTCAAAAGTC	c9p32311669ES	TTTGTGGGAGCTAAAAATTAAAAC
chr9	32453554	32453914	32463554	32463914	-	725	360	11	noL1	"COLO2T,COLO2N"	3690	365		"LINE:dbRIP,Ewing,Iskow,Stewart"	"DDX58,RIG-I"		c9p32453734FS	CCTGTTTTTAATCCAATTTTTCAG	c9p32453734ES	GTACTGTCCATTGTCTGTGTGTG
chr9	34006965	34007068	34016965	34017068	+	24	103	4	noL1	"COLO2T,COLO2N"	12	77	(A)n		UBAP2	"UBAP2.14,UBAP2.27"	c9p34007016FS	TCAAATAGCAACTGCAAGTAGTAAG	c9p34007016ES	GCCCAGCTAATTTTTGTATTTTC
chr9	34278170	34278563	34288170	34288563	+	13	393	4	noL1	"COLO2T,COLO2N"	84	393	AluJo		KIF24		c9p34278366FS	CTGTATATTTGCATTCCTCAGTTG	c9p34278366ES	AGGAAGATCTAACTTTTAGAGCCC
chr9	35382880	35383107	35392880	35393107	+	13	227	4	L1PA3	"COLO2T,COLO2N"	35	275	"L2c,L1ME1"		UNC13B		c9p35382993FS	TTACTTATCTCTTCCCCTACCCTC	c9p35382993ES	AATGCTAGATGACAAGTTAGTGGG
chr9	35873840	35874021	35883840	35884021	+	436	181	8	noL1	"COLO2T,COLO2N"	738	382	(TA)n				c9p35873930FS	AATTCCAATCAAATTTCTGAAAAG	c9p35873930ES	AGATAGTCAATGAAAACCACATCC
chr9	35940379	35940660	35950379	35950660	-	40	281	4	L1PA3	"COLO2T,COLO2N"	60	284	"L1PA3,LTR39,AT_rich"				c9p35940519FS	AAAAATACAAAAATTAGCCAGGTG	c9p35940519ES	TGGCACATATACATCATGGAATAC
chr9	42151606	42151832	42161606	42161832	-	23598	226	17	L1HS	"COLO2T,COLO2N"	27603	225	L1HS				c9p42151719FS	CTCATTTATTTTAGTATGCAAGCG	c9p42151719ES	ATATTGAGAATGGGAATTTGAATC
chr9	66003181	66003300	66263361	66263480	-	10	119	2	L1PA3	"COLO2T,COLO2N"	5	152	L1PA3				c9p66003240FS	GATCATGCTACTGCACTATAGCC	c9p66003240ES	TAGACTGGATTAAGAAAATTTGGC
chr9	66583843	66584349	66844023	66844529	-	10211	506	6	noL1	"COLO2T,COLO2N"	12866	413	ALR/Alpha				c9p66584096FS	CTTCGCATAAAAACTAGACAGAAG	c9p66584096ES	AAGATATTTCCTTTTCCATCACAG
chr9	67699222	67699334	68209402	68209514	-	135727	112	31	noL1	"COLO2T,COLO2N"	125237	279					c9p67699278FS	GTGGAAAAGAGAGGACTAGAACTG	c9p67699278ES	TTTACATTTTCCCACTTTTCTATTG
chr9	67966966	67967166	68477146	68477346	-	85	200	7	noL1	"COLO2T,COLO2N"	525	76		"LINE:Ewing,Iskow"			c9p67967066FS	ATGCATCGATAGTTAATTTTCTCC	c9p67967066ES	CACCCAAAGTCAATCTCTAGTCTC
chr9	69194606	69194929	69904786	69905109	+	12	323	2	noL1	"COLO2T,COLO2N"	25	65	"L1MC3,AluSx1"				c9p69194767FS	ACCAGGAGCAAGAAGAATTTTG	c9p69194767ES	CATACTCTCATGTTTCCACAGTTG
chr9	69796780	69796886	70556960	70557066	-	123	106	5	noL1	"COLO2T,COLO2N"	406	106					c9p69796833FS	GTGGAAAAGAGAGGACTAGAACTG	c9p69796833ES	TTACATTTTCCCACTTTTCTATGG
chr9	70324432	70324716	71134612	71134896	+	11	284	2	L1PA3	"COLO2T,COLO2N"	4	65	"AluJb,L1MEg,(TAAA)n"		PGM5		c9p70324574FS	CCGTCTTTTAACTTTCAAATTTTC	c9p70324574ES	AACTAAACACCATGAGCATAATTG
chr9	70396700	70397115	71206880	71207295	-	389	415	16	L1PA2	"COLO2T,COLO2N"	1134	422	"L1PA2,L1PA7"				c9p70396907FS	TGTATTTCCTGAATTTGAATGTTG	c9p70396907ES	AAAAGATGAGTTCATTGTCCTTTG
chr9	71287584	71288055	72097764	72098235	+	92	471	9	L1PA2	"COLO2T,COLO2N"	411	553	"L1PA2,(A)n"		APBA1		c9p71287819FS	GTTTGTTTGTTTCACACTATGCTC	c9p71287819ES	AACTAGAAATACCATTTGACCCAG
chr9	72238030	72238487	73048210	73048667	+	3178	457	15	L1HS	"COLO2T,COLO2N"	5516	356	"L1HS,L1MA4"				c9p72238258FS	GGACACTTAGGTTGATTCCATATC	c9p72238258ES	TCATTCTCAGTAAACTATCGCAAG
chr9	72592502	72592802	73402682	73402982	-	19	300	5	L1PA2	"COLO2T,COLO2N"	18	307	"L1ME3A,L1PA2,(T)n"		TRPM3		c9p72592652FS	TGCCTAAAACTATCATGCTTATTG	c9p72592652ES	CAAGGGTCCATTAACAAAGTATTC
chr9	72973240	72973390	73783420	73783570	-	21	150	3	noL1	"COLO2T,COLO2N"	27	72	"L1MEg,(T)n"		TRPM3		c9p72973315FS	TTTCTGAATATGCATCTTATCTGC	c9p72973315ES	CAGTTCTCACCACTCCCTATTATC
chr9	73030698	73031381	73840878	73841561	+	32	683	2	noL1	"COLO2T,COLO2N"	53	74	L1MA3		TRPM3		c9p73031039FS	TGTTGAAGTCTCCAGCTATTATTG	c9p73031039ES	TTTTTAGTAGAGATGGGGTTTCAC
chr9	74094473	74094712	74904653	74904892	-	888	239	6	noL1	"COLO2T,COLO2N"	15	206	THE1B-int	"LINE:Ewing,Iskow,Stewart"			c9p74094592FS	GAGGTTTATTGGACTTACAGTTGC	c9p74094592ES	CTCTGCAAGGGAAGTATGAAAG
chr9	74548080	74548438	75358260	75358618	+	125	358	2	noL1	"COLO2T,COLO2N"	468	74	"AluSx,AluYa5"		TMC1		c9p74548259FS	AGAAACCAGAATATGGAAAGATTG	c9p74548259ES	CTCTACTAAAAGTACAAAAGGCCG
chr9	74725864	74726321	75536044	75536501	-	55437	457	50	L1HS	"COLO2T,COLO2N"	60425	454	"L1HS,AluY"		ALDH1A1		c9p74726092FS	TTATTATGTCTTGCATAATGTGGG	c9p74726092ES	CTCTCTCTCTTGCTGATTATCCTC
chr9	75600278	75600762	76410458	76410942	-	243420	484	100	L1HS	"COLO2T,COLO2N"	279722	484	"L2a,L1HS,(T)n"				c9p75600520FS	TTTTCTTTTATTCAGCCAAATCTC	c9p75600520ES	TCATTCTCAGTAAACTATCGCAAG
chr9	77358854	77359254	78169034	78169434	+	24	400	4	L1PA4	"COLO2T,COLO2N"	7	526	"L1PA4,MIR3"				c9p77359054FS	TCTAGAAATATTGGTGCTAAAGGG	c9p77359054ES	AACTAGAAATACCATTTGACCCAG
chr9	79203855	79204488	80014035	80014668	+	50150	633	51	L1HS	"COLO2T,COLO2N"	61108	634	L1HS		VPS13A		c9p79204171FS	TCTGTGCATATAAGCAGTTAAACC	c9p79204171ES	TGGGAGATATACCTAATGCTAGATG
chr9	79216374	79216589	80026554	80026769	+	688	215	13	L1PA4	"COLO2T,COLO2N"	930	110	"AluYf5,L1PA4"		VPS13A		c9p79216481FS	ATTGGAATAGTTTCAGAAGGAATG	c9p79216481ES	CAGGAAAAATCTAAAATTGACACC
chr9	80340654	80340770	81150834	81150950	+	111	116	7	L1PA2	"COLO2T,COLO2N"	58	116	"L1PA2,MIR3"				c9p80340712FS	ATCCCTTAATTTCAATTCAATGTC	c9p80340712ES	GATGAGTTCATATCCTTTGTAGGG
chr9	81411067	81411842	82221247	82222022	-	18	775	4	L1PA6	"COLO2T,COLO2N"	59	236	L1PA6		"KIAA1261,TLE4"		c9p81411454FS	TCTTTAAGCTTTATTCCAGTCAGG	c9p81411454ES	AGAAGACATTTATGCAGTCAACAG
chr9	82056571	82057104	82866751	82867284	+	8272	533	33	L1HS	"COLO2T,COLO2N"	5426	532	L1HS				c9p82056837FS	CCTCACTCTCTCTCCTTAGTCATC	c9p82056837ES	TCATTCTCAGTAAACTATCGCAAG
chr9	82543597	82543775	83353777	83353955	+	32	178	4	L1PA3	"COLO2T,COLO2N"	20	105	"L1PA3,L1MEc"				c9p82543686FS	GATGAGAAATCTGTCTTCCTTACC	c9p82543686ES	ACTCCATCTTAAAAGAAAATGTGG
chr9	82586219	82586326	83396399	83396506	-	23	107	2	L1PA4	"COLO2T,COLO2N"	1	65	"L1MDa,L1PA4,(TTA)n"				c9p82586272FS	AGTTCGTAGTTTTCAAGATATCGG	c9p82586272ES	GTACACGTATGTTTATTACGGCAC
chr9	83516624	83516754	84326804	84326934	+	146	130	18	noL1	"COLO2T,COLO2N"	98	96	"SVA_F,(A)n"		"BC036431,CR614802"		c9p83516689FS	CCAACTCTGGTTAATTTTTAGGAG	c9p83516689ES	TGTGTAGAAAGAAGTAGACATGGG
chr9	83622091	83622218	84432271	84432398	+	36	127	4	noL1	"COLO2T,COLO2N"	4	126	AluSz				c9p83622154FS	TCTCTGACTTCTAGCTTCCAGAAC	c9p83622154ES	AATATTGGAGATCAAGAAGTGTTTG
chr9	84853849	84854327	85664029	85664507	-	21146	478	37	L1HS	"COLO2T,COLO2N"	14898	343	"L1HS,AluSx"		RASEF		c9p84854088FS	GTGTGGTAGTGCATGTCTGTAATC	c9p84854088ES	TCATTCTCAGTAAACTATCGCAAG
chr9	85254762	85255115	86064942	86065295	-	47702	353	45	L1HS	"COLO2T,COLO2N"	47897	383	"(CA)n,L1HS"		FRMD3		c9p85254938FS	TAGACTCATGTTTGTTGATTGGAC	c9p85254938ES	AAAAACAGATGTAAAAACTGAGGG
chr9	87615765	87616070	88425945	88426250	-	57	305	7	L1PA2	"COLO2T,COLO2N"	116	642	L1PA2	LINE:dbRIP	"BC108718,CR613032"		c9p87615917FS	AAAATATGTGTGTGTGTGTGTGTG	c9p87615917ES	TCATTCTCAGTAAACTATCGCAAG
chr9	88852654	88852900	89662834	89663080	+	89	246	6	L1PA3	"COLO2T,COLO2N"	289	243	L1MEc				c9p88852777FS	GTCTCCTAATTGAGTACTTCCAGG	c9p88852777ES	ATGATGAGTTCATGTCCTTTGTAG
chr9	89081304	89081481	89891484	89891661	-	16	177	2	noL1	"COLO2T,COLO2N"	1	65		"LINE:Ewing,Iskow,Stewart"			c9p89081392FS	CTAAAAATACAAAAATGAGCCAGC	c9p89081392ES	TTCTTCTTGCATTGAAATAACTTG
chr9	90321515	90321842	91131695	91132022	-	26	327	7	L1PA7	"COLO2T,COLO2N"	14	322	"(TTCC)n,L1PA7,AluSz"				c9p90321678FS	TAATGACACCACAAGTAAACCATC	c9p90321678ES	ATAGACTGGATAAAGAAAAGGTGG
chr9	90472397	90472682	91282577	91282862	-	18	285	5	L1PA4	"COLO2T,COLO2N"	1	65	"L1PA11,L1PA4"				c9p90472539FS	ATTTACAGGCATTTAGGTTGATTC	c9p90472539ES	AACTAGAAATACCATTTGACCCAG
chr9	91755809	91755969	92715989	92716149	+	31	160	5	L1PA2	"COLO2T,COLO2N"	14	71	L1PA2				c9p91755889FS	TATTGTCAAGAAAAATAAGGAGGG	c9p91755889ES	CAACAAAAATGGACTAAAACACTG
chr9	91957692	91958065	92917872	92918245	+	3314	373	11	L1HS	"COLO2T,COLO2N"	2615	331	"L1HS,L1MC1"	LINE:dbRIP			c9p91957878FS	CATGGCATCAGTAAAAATCTAAAG	c9p91957878ES	GATGAGTTCATATCCTTTGTAGGG
chr9	92655946	92656393	93616125	93616572	+	1604	447	19	L1PA3	"COLO2T,COLO2N"	289	446	L1PA3		SYK		c9p92656169FS	ACAGTGATGTTCTTGCAACTTTAG	c9p92656169ES	TCATCATTCTCAGTAAACTATCGC
chr9	93097976	93098300	94058155	94058479	-	220	324	7	noL1	"COLO2T,COLO2N"	197	301		"LINE:dbRIP,Ewing,Iskow,Stewart"	AUH	AUH.4	c9p93098138FS	CAGGTGACCATTAGAAAATTTAGC	c9p93098138ES	TGACCTATTAAGCTCTTTGGTCTG
chr9	93884135	93884394	94844314	94844573	-	36992	259	40	L1PA3	"COLO2T,COLO2N"	42438	260	"L2a,L1PA3,MIRb"		SPTLC1		c9p93884264FS	ACAATCAGCCTATTTTAACCAGAG	c9p93884264ES	TCATTCTCAGTAAACTATCGCAAG
chr9	95915421	95915695	96875600	96875874	-	294	274	9	L1HS	"COLO2T,COLO2N"	613	514	"MLT1A1-int,L1HS"				c9p95915558FS	TATAGCAGCACAAAATGGACTAAG	c9p95915558ES	TCATTCTCAGTAAACTATCGCAAG
chr9	96271089	96271328	97231268	97231507	-	30	239	2	L1PA4	"COLO2T,COLO2N"	12	65	"Tigger1,L1PA4,AluSz"				c9p96271208FS	GACCATTCAAACTTTCTCCATATC	c9p96271208ES	ACGGTAGACTGGATTAAGAAAATG
chr9	96471284	96471760	97431463	97431939	+	13	476	2	noL1	"COLO2T,COLO2N"	30	66	"MER61F,AluY"				c9p96471522FS	ATCACAAAGTTAGGAGATCGAGAC	c9p96471522ES	AAAATGTCTCCAGATATTATTGCC
chr9	96553847	96554434	97514026	97514613	-	21	587	2	noL1	"COLO2T,COLO2N"	3	69	"AluJb,L1PA17"		C9orf3		c9p96554140FS	TTCTATGTATCTGGGCTTCTTTTC	c9p96554140ES	CACTTTGAATACAAGATTCCACTG
chr9	97505652	97506148	98465831	98466327	+	7639	496	29	L1HS	"COLO2T,COLO2N"	11015	496	"(TG)n,L1HS,Tigger2,L1M5"	LINE:dbRIP			c9p97505900FS	GTACTTGGATTGTAAACTTCCCTG	c9p97505900ES	TCATTCTCAGTAAACTATCGCAAG
chr9	98765222	98765463	99725401	99725642	+	732	241	4	noL1	"COLO2T,COLO2N"	905	240	AluSz		HIATL2		c9p98765342FS	GCCTGGCTAATTTTTGTATTTTTAG	c9p98765342ES	TGTCTTTTTGTTGTTGTTTGATTC
chr9	100388223	100388446	101348402	101348625	-	14	223	2	L1PA4	"COLO2T,COLO2N"	6	65	"AluSz6,L1ME3E"		GABBR2		c9p100388334FS	TTTTTGAGCACAAATATGACACTC	c9p100388334ES	AACTGTAAAGAAAAGCAAAGAAGG
chr9	101600234	101600522	102560413	102560701	+	62	288	6	L1PA3	"COLO2T,COLO2N"	38	295	"L1PA3,L2c"		AK057451		c9p101600378FS	GCACTAATTACAGTTTGTTCATCTG	c9p101600378ES	TTTAAATATTGGAGGAGTACCCAG
chr9	101654986	101655482	102615165	102615661	-	80182	496	53	L1HS	"COLO2T,COLO2N"	51209	334	"L1HS,MIRb"	LINE:dbRIP	NR4A3		c9p101655234FS	TCTTTTTCCTGGTCTTATTGAAAC	c9p101655234ES	TCATTCTCAGTAAACTATCGCAAG
chr9	101884436	101884616	102844615	102844795	+	14	180	4	L1PA8	"COLO2T,COLO2N"	10	185	"L1PA8,L1MC4a"		"ERP44,KIAA0573"		c9p101884526FS	TTGAACAATATAGGTTTGAACTGC	c9p101884526ES	CATACACACACACAAAACAACTAGAG
chr9	102498826	102498945	103459005	103459124	+	43	119	4	L1PA2	"COLO2T,COLO2N"	5	82	"MER102c,L1PA2"				c9p102498885FS	TTCATAGTCTGGTTATGTGACCC	c9p102498885ES	ATGAAATTGGAAGTCATCATTCTC
chr9	102789051	102789495	103749230	103749674	+	6573	444	27	L1HS	"COLO2T,COLO2N"	7835	443	"L1HS,MIR"				c9p102789273FS	ATACAGATACCCACCACCTAACTC	c9p102789273ES	GATGAGTTCATATCCTTTGTAGGG
chr9	103483506	103483859	104443685	104444038	-	3710	353	12	L1HS	"COLO2T,COLO2N"	4938	349	"L1HS,L2b"	LINE:dbRIP	GRIN3A		c9p103483682FS	TTCTCAAACTCCTATTCACTTTCC	c9p103483682ES	GATGAGTTCATATCCTTTGTAGGG
chr9	103679549	103679841	104639728	104640020	+	132	292	9	L1PA3	"COLO2T,COLO2N"	119	264	"L1PA3,AT_rich,L1M5"				c9p103679695FS	TTAAAATTACAGGGAGTAATTGGC	c9p103679695ES	AGAGACTGGATTAAGAAAATGTGG
chr9	103893293	103893651	104853472	104853830	-	6448	358	27	L1PA3	"COLO2T,COLO2N"	6500	471	"L1PA3,LTR48B"				c9p103893472FS	ATGGTACTTTGACATGCTGTATTG	c9p103893472ES	TTATGAGTTCATGTCCTTTGTAGG
chr9	104187886	104188034	105148065	105148213	+	25	148	3	L1PA3	"COLO2T,COLO2N"	4	65	A-rich				c9p104187960FS	ATATGAAGAAATGGAAGCTAAGGC	c9p104187960ES	TCATTCTCAGTAAACTATCGCAAG
chr9	104202046	104202410	105162225	105162589	-	14513	364	30	L1HS	"COLO2T,COLO2N"	15965	366	"L1HS,Tigger2"				c9p104202228FS	TTGAATCTCTCCAAGACACATATC	c9p104202228ES	AGCTCTAATCTTCTATGCAAATGG
chr9	104277753	104277927	105237932	105238106	-	29	174	2	L1PA4	"COLO2T,COLO2N"	126	174	"L1M3,L1PA4"				c9p104277840FS	GTCATCATCAGTTCATTTCACAAC	c9p104277840ES	GGGTACCTGTTTTTGTATAATTGC
chr9	104823900	104824361	105784079	105784540	-	24305	461	20	L1HS	"COLO2T,COLO2N"	9029	252	"L1HS,(TTTA)n,AluJo,AT_rich"				c9p104824130FS	CCTGATATTCACACAGTTTTGTTG	c9p104824130ES	TCATTCTCAGTAAACTATCGCAAG
chr9	105541143	105541589	106501322	106501768	-	13206	446	17	L1HS	"COLO2T,COLO2N"	3545	557	"L1HS,(TTTTTA)n"	LINE:Iskow			c9p105541366FS	ATGTTTGAAAATATGGACCTTGAG	c9p105541366ES	TTCTCAGTAAACTATCGCAAGAAC
chr9	108210263	108210389	109170442	109170568	+	2305	126	7	L1PA3	"COLO2T,COLO2N"	2706	121	MIRc		BC039487		c9p108210326FS	ATTAAACTCACTTCAATTTCCCAG	c9p108210326ES	TCATTCTCAGTAAACTATCGCAAG
chr9	109058100	109058209	110018279	110018388	-	735	109	24	noL1	"COLO2T,COLO2N"	1719	109	"SVA_F,(T)n"	LINE:Ewing			c9p109058154FS	CTGAGACATGAGAATAGCTTGAAC	c9p109058154ES	TGTGTAGAAAGAAGTAGACATGGG
chr9	110312050	110312513	111272229	111272692	+	28	463	2	L1PA4	"COLO2T,COLO2N"	282	66	L1PA4				c9p110312281FS	GTATTGGGGTTTATACTTGTGGAG	c9p110312281ES	TAATGCTAAATGACGAGTTAATGG
chr9	110604854	110605151	111565033	111565330	+	782	297	11	noL1	"COLO2T,COLO2N"	395	297	Tigger8	"LINE:dbRIP,Ewing,Stewart"			c9p110605002FS	CTAATTTATTAGTCCCACAAAGGC	c9p110605002ES	AGACAATGGACAGTTGAAAATATG
chr9	110834454	110834972	111794633	111795151	-	15	518	4	noL1	"COLO2T,COLO2N"	37	72	"AluSx,AluSx1,L1MC4"		C9orf5		c9p110834713FS	TCATTGTATCATTGGTTATCGAAG	c9p110834713ES	CTAAAAATACAAAAATCAGCCAGG
chr9	111756719	111756835	112716898	112717014	+	32	116	7	L1PA2	"COLO2T,COLO2N"	11	248	"MER102b,L1PA2"		"PALM2-AKAP2,AKAP2"		c9p111756777FS	GTGGGCCAAGAGTAAGAATAATAG	c9p111756777ES	GTTTTGTTATTGTTGCTGATGATG
chr9	111824596	111824717	112784775	112784896	-	822	121	13	L1PA4	"COLO2T,COLO2N"	1029	125	"L1PA4,(TTTTC)n"		"PALM2-AKAP2,AKAP2"		c9p111824656FS	CATTTTTAGCATTGTCTTTCACTG	c9p111824656ES	CGTATGTTTATTGTGGCACTATTC
chr9	111834113	111834891	112794292	112795070	+	474	778	8	noL1	"COLO2T,COLO2N"	831	774	"AluJb,(TAAA)n,(A)n,AluSx4"		"PALM2-AKAP2,AKAP2"		c9p111834502FS	ACCTGTCTCCTGAGTAGCTGAGAC	c9p111834502ES	ATCCTTGAGAATGAGTTGTTCTTC
chr9	112214756	112214861	113174935	113175040	+	58	105	3	noL1	"COLO2T,COLO2N"	25	105	L1PA3		SVEP1		c9p112214808FS	CAGTCTATCATTGTTGGACATTTG	c9p112214808ES	TGTACAATGCCATATTTAGCCTAC
chr9	112225158	112225603	113185337	113185782	+	63313	445	88	L1HS	"COLO2T,COLO2N"	68489	480	"L1HS,L1ME3C,(A)n"	LINE:dbRIP	SVEP1		c9p112225380FS	AAAGATATTCTGCTTATCTGTGGC	c9p112225380ES	GATGAGTTCATATCCTTTGTAGGG
chr9	112599185	112599697	113559364	113559876	+	93136	512	104	L1HS	"COLO2T,COLO2N"	72392	518	"L2a,L1HS,AT_rich,(A)n"		MUSK		c9p112599441FS	GATTCAGATTTTTGTGTGATGAAG	c9p112599441ES	TCATTCTCAGTAAACTATCGCAAG
chr9	113004738	113005008	113964917	113965187	+	59	270	2	L1PA3	"COLO2T,COLO2N"	163	274	"L1PA11,L1PA3,AT_rich"				c9p113004873FS	GTCGTTTTTGATTGTGTTTACTTG	c9p113004873ES	AAAAACCAAACACCACATATTCTC
chr9	114599905	114600280	115560084	115560459	-	3786	375	24	L1HS	"COLO2T,COLO2N"	8179	427	"L1HS,AluSz"		SNX30		c9p114600092FS	GTTTTAATGGAATTGGTTGATCTC	c9p114600092ES	GATGAGTTCATATCCTTTGTAGGG
chr9	114996492	114996694	115956671	115956873	+	71	202	9	L1PA2	"COLO2T,COLO2N"	51	383	L1PA2		"FKBP15,KIAA0674"		c9p114996593FS	CTATTCATGGAAGCATTGTTTATG	c9p114996593ES	CTTACCCTGATTTGAAAGGTATTG
chr9	115052736	115053073	116012915	116013252	+	146	337	7	L1PA3	"COLO2T,COLO2N"	122	254	"MSTB2,L1PA3"		"SLC31A1,FKBP15"		c9p115052904FS	TTTTTAGTGGAGATGAGGTTTCAC	c9p115052904ES	CTCACTTATAGGTGGGAATTGAAC
chr9	117123383	117123675	118083562	118083854	-	52	292	4	noL1	"COLO2T,COLO2N"	64	292	L1ME1	"LINE:dbRIP,Ewing,Iskow"	"CTS9,DEC1"		c9p117123529FS	GGAATTTAAACATTTCTGCTCTTC	c9p117123529ES	AGATTGAGTGCATATTTCAATGAG
chr9	120977206	120977799	121937385	121937978	+	429	593	11	L1PA2	"COLO2T,COLO2N"	580	665	"L1PA2,L1PA7"		DBC1		c9p120977502FS	AAGAGTTTATTGGTAGCATGGAAG	c9p120977502ES	TAATGCTAGATGACGAGTTAGTGG
chr9	121279103	121279351	122239282	122239530	+	46	248	3	L1PA4	"COLO2T,COLO2N"	42	281	AluSx				c9p121279227FS	AATACAGAAATCCCTCTGTCTTTG	c9p121279227ES	AACACCACATGTTCTCACTCATAG
chr9	122318607	122318949	123278786	123279128	+	127	342	12	L1PA4	"COLO2T,COLO2N"	141	371	"L1ME4a,AluJo,L1PA4"		CDK5RAP2		c9p122318778FS	CTGTACTATCGTTCAGTCCTGATG	c9p122318778ES	TTGTAGATACATGGATGAAACTGG
chr9	123313648	123314067	124273827	124274246	+	11	419	3	noL1	"COLO2T,COLO2N"	4	66	"AluSx,AluY,MIRb"				c9p123313857FS	AACATGGTGAAACCTCATCTCTAC	c9p123313857ES	ACCAAGACTTTGACTTGTTAGAGC
chr9	123773823	123774255	124734002	124734434	+	15	432	4	noL1	"COLO2T,COLO2N"	16	648	"SVA_F,L1PA7"		TTLL11		c9p123774039FS	CAAATAATGTGTTCACCAGTACG	c9p123774039ES	GAATAGAAAGGTGGGAAAGGTG
chr9	124568090	124568427	125528269	125528606	+	13	337	7	L1PA4	"COLO2T,COLO2N"	20	339	"L1M4c,L1PA4"				c9p124568258FS	ATACACCAAACCCAATTTGTAGTC	c9p124568258ES	TCATTCTCAGCAAACTATCACAAG
chr9	126587033	126587541	127547212	127547720	-	25	508	5	noL1	"COLO2T,COLO2N"	62	69	"AluSx,L1MB5,AluY"		OLFML2A		c9p126587287FS	CTAATCTGTTTGCTGTCTCTATGG	c9p126587287ES	CCCCGTCTCTACTAAACAAAATAC
chr9	127779324	127779455	128739503	128739634	-	13	131	2	noL1	"COLO2T,COLO2N"	9	131	L1MC1				c9p127779389FS	TTTCCTCTCTCTCCTTTATTCCTC	c9p127779389ES	TGCTACAGTGACTTTGGAAGATAG
chr9	128804529	128804829	129764708	129765008	-	200	300	7	L1PA2	"COLO2T,COLO2N"	226	70	"L1PA2,L1ME3"		RALGPS1		c9p128804679FS	TCAAGATGTAAAACATACCAGCAC	c9p128804679ES	ACTAGAAATACCATTTGATCCAGC
chr9	131794972	131795599	132755151	132755778	+	13	627	3	noL1	"COLO2T,COLO2N"	23	70	"AT_rich,AluJo,AluSz"		FNBP1		c9p131795285FS	CTGGGTGACAGAGTAAGACTCC	c9p131795285ES	CACATATCTTTTATGCAGATGCTC
chr9	133559769	133560063	134569948	134570242	-	24	294	4	L1PA4	"COLO2T,COLO2N"	22	294	"L2a,L1PA4"	Alu:Stewart	RAPGEF1		c9p133559916FS	ATGTACTGAATGAACTTCTCTCCC	c9p133559916ES	ATTGTTTTAGCCACTTGGGTTAC
chr9	134394665	134395367	135404844	135405546	+	9625	702	33	L1HS	"COLO2T,COLO2N"	6283	353	"AluSc8,L1MD2,L1HS,AluJb"		FLJ46082		c9p134395016FS	AGAAAAGAAAGAAAGAAAAGAGGC	c9p134395016ES	GAATATCACACTCTGGGGACTG
chr9	136618389	136618544	137478568	137478723	-	12	155	4	L1PA3	"COLO2T,COLO2N"	4	67	L1PA3				c9p136618466FS	CTCACTCCTTGGTGTATCTAGTCC	c9p136618466ES	CAAATGTCCAACAATGATAGACTG
chr9	140197885	140198256	141078064	141078435	-	31050	371	38	L1HS	"COLO2T,COLO2N"	41077	377	"L1MB3,L1HS"				c9p140198070FS	GGAGGTGTTAGTCCTCTAACTTTG	c9p140198070ES	GATGAGTTCATATCCTTTGTAGGG
chrX	3486702	3486822	3476702	3476822	+	65	120	9	L1PA2	"COLO2T,COLO2N"	57	120	"L1PA2,HERVH-int"				cXp3486762FS	GTCTCTACCCCTTCTCTGATTTTC	cXp3486762ES	CAAATGTCCAACAATGATAGACTG
chrX	6511769	6512109	6501769	6502109	-	212	340	9	L1PA2	"COLO2T,COLO2N"	242	280	L1PA2				cXp6511939FS	AATTGAACTATCATGACCTGTGAG	cXp6511939ES	TCATTCTCAGTAAACTATCGCAAG
chrX	7277187	7277412	7267187	7267412	-	29	225	4	noL1	"COLO2T,COLO2N"	49	223	"AluJb,AluSx1"		STS		cXp7277299FS	TATACGTTGCATGCCATTATATTC	cXp7277299ES	ATCAAGAATTAAATGAACTTTGGG
chrX	7379480	7379602	7369480	7369602	-	18	122	6	L1PA4	"COLO2T,COLO2N"	32	123	L1PA4				cXp7379541FS	AGAAGCCTAAATATACCCCTAAGC	cXp7379541ES	TAAATCACGCTGCTATAAAGACAC
chrX	7515526	7515693	7505526	7505693	-	34	167	9	L1PA3	"COLO2T,COLO2N"	21	72	L1PA3				cXp7515609FS	TTTGTATTTTTAGTAGAGACGGGG	cXp7515609ES	TCATTCTCAGTAAACTATCGCAAG
chrX	10894288	10895033	10984367	10985112	-	17	745	3	L1PA4	"COLO2T,COLO2N"	15	66	"L1PA3,AT_rich"		AY660577		cXp10894660FS	ACTCTAAAGAGACAGACACTTGGC	cXp10894660ES	TACCCAAAGGACTATAAATCATGC
chrX	11446623	11446730	11536702	11536809	-	46	107	3	L1PA10	"COLO2T,COLO2N"	30	341	L1PA2		ARHGAP6		cXp11446676FS	TCTTTCTTTTCTTTTCCTTGACAG	cXp11446676ES	CAAATGTCCAACAATGATAGACTG
chrX	11641264	11641805	11731343	11731884	+	8755	541	35	L1HS	"COLO2T,COLO2N"	5544	498	"L1MB8,L1HS"	LINE:dbRIP			cXp11641534FS	GTTTGTTAGAAAGACATGATGCAG	cXp11641534ES	TTCTCAGTAAACTATCGCAAGAAC
chrX	11742233	11742678	11832312	11832757	-	34	445	4	L1PA2	"COLO2T,COLO2N"	71	360	L1PA2				cXp11742455FS	CTAGTTCTCAGCCTAACCTTTCTG	cXp11742455ES	AGCAAATCACTAAGTAAGGACCAC
chrX	11863076	11863371	11953155	11953450	-	1000	295	19	L1HS	"COLO2T,COLO2N"	778	337	L1HS	"LINE:dbRIP,Ewing"			cXp11863223FS	TCTATCTCTCCCACTGCTCTATTC	cXp11863223ES	GATGAGTTCATATCCTTTGTAGGG
chrX	12290154	12290281	12380233	12380360	-	12	127	2	L1PA5	"COLO2T,COLO2N"	1	65	"AT_rich,L1PA5"		FRMPD4		cXp12290217FS	TATTCTCTCACAGTTCTGGAGGTC	cXp12290217ES	ACGATAGACTGGGTTAAGAAAATG
chrX	14061548	14061945	14151627	14152024	-	1531	397	13	noL1	"COLO2T,COLO2N"	901	476	AmnSINE1	"LINE:Ewing,Iskow,Stewart"			cXp14061746FS	ATCTGCTAAATATTGTGTTCATGC	cXp14061746ES	AAGAGAAAATACTGGACTCACCAC
chrX	14558795	14558914	14648874	14648993	-	359	119	5	noL1	"COLO2T,COLO2N"	744	69	MLT1A1		GLRA2		cXp14558854FS	TTGAGCAATTTAATTATGATGTGG	cXp14558854ES	AGGTTAACAAGAGACATGGAAGAC
chrX	14621041	14621269	14711120	14711348	+	11	228	4	L1PA3	"COLO2T,COLO2N"	12	233	"L1MEe,L1PA3"		GLRA2		cXp14621155FS	CCTCACTATGAGTGTGAGTTTGTC	cXp14621155ES	AAGAAACACTATCCTGGCTTACTG
chrX	16242805	16243120	16332884	16333199	-	25	315	3	L1PA3	"COLO2T,COLO2N"	51	315	"L1PA3,LTR39"				cXp16242962FS	AGCTAATTTGTTAGTCCTGCAAAG	cXp16242962ES	TACAGATCATAGGCAGATTCAAAG
chrX	16337512	16338141	16427591	16428220	+	61	629	8	L1HS	"COLO2T,COLO2N"	91	72	"L1HS,AT_rich,(A)n,MLT1H"	LINE:dbRIP			cXp16337826FS	TGGACTACAAATTACATGGTCAAC	cXp16337826ES	GTATCCATTACGACCTAACAAACC
chrX	16984015	16984485	17074094	17074564	+	12412	470	34	L1HS	"COLO2T,COLO2N"	28226	644	"L1HS,(A)n,AluY"		REPS2		cXp16984250FS	TTTTTAGTAGAGATGGGGTTTCAC	cXp16984250ES	TCATTCTCAGTAAACTATCGCAAG
chrX	17111623	17112134	17201702	17202213	-	9291	511	31	L1PA3	"COLO2T,COLO2N"	7967	512	"L2a,L1PA3"				cXp17111878FS	AAGAGTAAAGCAATACCAGTGACC	cXp17111878ES	TCATTCTCAGTAAACTATCGCAAG
chrX	18695141	18695480	18785220	18785559	+	3973	339	6	noL1	COLO2T	0	0	"Tigger15a,AluSx4"		PPEF1		cXp18695310FS	CTTTCTCTTTCTTCATGCTCTCTC	cXp18695310ES	GGAACCCCATTCTCTACTAAATAC
chrX	19867967	19868376	19958046	19958455	-	470	409	9	L1PA2	"COLO2T,COLO2N"	1102	74	"L1PA2,L1MB4,MLT1J"		CXorf23		cXp19868171FS	CAATACAAATGTCCACAGAAAAAC	cXp19868171ES	TCATTCTCAGTAAATTATCGCAAG
chrX	19903234	19903429	19993313	19993508	-	17	195	6	noL1	"COLO2T,COLO2N"	15	72	"MER58C,AluSz"				cXp19903331FS	CAAACTATTCATTCAAAGATGGTG	cXp19903331ES	CTTGAGCCTAAGAGTTTGAGACC
chrX	20307067	20307457	20397146	20397536	-	10	390	3	noL1	"COLO2T,COLO2N"	3	66	AluSz				cXp20307262FS	AATTGAAAATTCATCTAGAGCTGG	cXp20307262ES	TTTGAATGAAGGGAAGAAATTAAG
chrX	20705304	20705886	20795383	20795965	+	48	582	7	L1PA5	"COLO2T,COLO2N"	44	582	"L1PA13,L1PA5"				cXp20705595FS	AAATGTCTATTCAGATCTTTTGCC	cXp20705595ES	AACACTGCATGTTCTCACTCATAG
chrX	21273477	21273803	21363556	21363882	+	12	326	2	L1PA3	"COLO2T,COLO2N"	12	327	"L1PA3,L1MA3"				cXp21273640FS	CATCAGGGTAAATAGGTATCCATC	cXp21273640ES	TTCACAATAGCAAAGACTTGTACC
chrX	21927315	21927441	22017394	22017520	-	15	126	3	L1PA6	"COLO2T,COLO2N"	25	125					cXp21927378FS	TGCACAGGAATGTAAAAATAAGTG	cXp21927378ES	CATTCTCAGCAAACTATCACAAAG
chrX	23172532	23172902	23262611	23262981	+	152	370	20	L1HS	"COLO2T,COLO2N"	184	362	"MER4-int,L1HS"				cXp23172717FS	CCAAAGTGATAACTCAAGGATTTC	cXp23172717ES	TCATTCTCAGTAAACTATCGCAAG
chrX	23351151	23351273	23441230	23441352	-	25	122	2	L1PA4	"COLO2T,COLO2N"	11	65	L1M2				cXp23351212FS	TTTGCTTTGACTTTAGACAGTTTG	cXp23351212ES	TGATGAGTTCATGTCCTTAGTAGG
chrX	24237678	24237950	24327757	24328029	+	977	272	39	L1HS	"COLO2T,COLO2N"	304	278	"L1HS,(A)n"				cXp24237814FS	CATAATGTCCTCATGATTTATCCC	cXp24237814ES	GAGAAAAAGACAAAGAAAAAGACG
chrX	26242201	26242504	26332280	26332583	-	7305	303	30	L1HS	"COLO2T,COLO2N"	8951	927	"L1HS,L1MA6"				cXp26242352FS	TATTGATAAACCTCTCTGTCTCCC	cXp26242352ES	TCATTCTCAGTAAACTATCGCAAG
chrX	27152547	27152650	27242626	27242729	-	35	103	2	L1PA3	"COLO2T,COLO2N"	34	162			BC024027		cXp27152598FS	TACAATCTGTTCTTCTCTCCTTCC	cXp27152598ES	TAGACTGGATTAAGAAAATGTGGC
chrX	28879298	28879469	28969377	28969548	+	15	171	2	L1PA3	"COLO2T,COLO2N"	28	65	"L1PA3,AT_rich"		IL1RAPL1		cXp28879383FS	TTTATCTGTGTTTCCTTTTCCATC	cXp28879383ES	TCATTCTCAGTAAACTATCGCAAG
chrX	30064363	30064792	30154442	30154871	-	109	429	7	L1PA4	"COLO2T,COLO2N"	81	342	L1ME3A				cXp30064577FS	TTTTCTGGTACCTAAATGTAAGCC	cXp30064577ES	ATTGGTTTATCTTTTTCAGATTGG
chrX	30349369	30349828	30439448	30439907	-	33	459	2	noL1	"COLO2T,COLO2N"	195	460	"AluYb8,AluJr4"				cXp30349598FS	GAATATTATTTGGCCATGAAAAAG	cXp30349598ES	AGTTTGTGATTCAGTTATCGTCTG
chrX	30513078	30513357	30603157	30603436	-	37	279	6	L1PA4	"COLO2T,COLO2N"	16	277	L1PA4				cXp30513217FS	ACTCAGAGAGAGTTTCATTTCAGC	cXp30513217ES	TTCAACTATCAAACAGAGCAAGTG
chrX	31294484	31294587	31384563	31384666	+	31	103	8	noL1	"COLO2T,COLO2N"	67	87	(A)n		DMD		cXp31294535FS	AGACAGACTGCTGCATAGAAAAG	cXp31294535ES	AAGCTGAGTTTTGACCATAGATTC
chrX	31458409	31458756	31548488	31548835	-	1751	347	18	L1HS	"COLO2T,COLO2N"	1381	362	"L1HS,L2b,(T)n"		DMD		cXp31458582FS	CCATACTAACCAAAAATTTCTTCC	cXp31458582ES	TCATTCTCAGTAAACTATCGCAAG
chrX	31619109	31619376	31709188	31709455	+	122	267	6	L1PA5	"COLO2T,COLO2N"	73	79	"L1MA2,L1PA5"		DMD		cXp31619242FS	TTTTTCATCCCTTTACTTTCAGTC	cXp31619242ES	TAGACTGGATTAAGAAAATGTGGC
chrX	32329429	32329589	32419508	32419668	+	37	160	3	L1PA3	COLO2T	0	0	L1MA2		DMD		cXp32329509FS	TCAATGTTTGTAGGCACGTAGTAG	cXp32329509ES	ATACACCTTGGAATACTATGCAGC
chrX	32708932	32709186	32799011	32799265	+	30	254	2	noL1	"COLO2T,COLO2N"	118	254	"L2a,AluY"		DMD		cXp32709059FS	TGTCTTCTGTTTTTCAAATGTTTC	cXp32709059ES	ACAAAGTAGCCAGTAAGATCAAGG
chrX	33335571	33335850	33425650	33425929	+	111	279	5	noL1	"COLO2T,COLO2N"	146	280	L1PA13	"LINE:Beck,Ewing"			cXp33335710FS	TCACAAAACAGACTTTAAAGCAAC	cXp33335710ES	TCTCAATCTTCTTCATTTCAGCTC
chrX	33495348	33495709	33585427	33585788	+	437	361	9	noL1	"COLO2T,COLO2N"	601	361	"AluY,L1MA6"				cXp33495528FS	AATAGACACATAGACCAATGCAAC	cXp33495528ES	AATATTCTGGATGTTAACCCATTG
chrX	34321620	34321786	34411699	34411865	+	6078	166	6	L1PA2	"COLO2T,COLO2N"	10660	69	L1PA2				cXp34321703FS	TTTGTATTTTTAGTAGAGACGGGG	cXp34321703ES	CAGTCTATCATTGTTGGACATTTG
chrX	34746979	34747452	34837058	34837531	-	1854	473	15	L1HS	"COLO2T,COLO2N"	3012	392	"L1MA9,L1HS,(TG)n"				cXp34747215FS	TGACCTACATCTTCCTATTTCCTC	cXp34747215ES	TCATTCTCAGTAAACTATCGCAAG
chrX	36098107	36098301	36188186	36188380	-	75	194	4	L1PA3	"COLO2T,COLO2N"	78	193	L1M4b				cXp36098204FS	CATATGTTCCTCTCATGTTTCATC	cXp36098204ES	ATGATGTGTTCATGTCCTTTGTAG
chrX	41520375	41520674	41635431	41635730	+	63	299	4	L1PA3	"COLO2T,COLO2N"	81	447	"L1ME3B,Tigger3b"		CASK		cXp41520524FS	TCTTCCCATTTATTTAGCTCTTTG	cXp41520524ES	AATGCTAGATGACAAGTTAGTGGG
chrX	42917285	42917419	43032341	43032475	+	11	134	2	L1PA5	COLO2T	0	0	"MER39B,L1PA5"				cXp42917352FS	AATTATGTAGGTTCTGTAGCGGTC	cXp42917352ES	TAGACTGGATTAAGAAAATGTGGC
chrX	43050188	43050436	43165244	43165492	-	15778	248	19	L1HS	"COLO2T,COLO2N"	10314	251	"L1HS,AluJo"				cXp43050312FS	ACATGATCTAATGAGCAGTCAGTC	cXp43050312ES	TAGACTGGATTAAGAAAATGTGGC
chrX	43333414	43333776	43448470	43448832	+	355399	362	61	L1HS	"COLO2T,COLO2N"	199875	416	"LTR65,L1HS"				cXp43333595FS	GTTTACATATGAGTTTGCCTTTCC	cXp43333595ES	TTGTAAATTTGTTTGAGTACACCG
chrX	44208512	44208746	44323568	44323802	+	10	234	3	L1PA16	"COLO2T,COLO2N"	13	233	"AluSx3,L1PA16"				cXp44208629FS	GACTAATGGCCTTAAGGGAGAG	cXp44208629ES	AGAGAGAGAGAGAGAGGAAGGAAG
chrX	45334312	45334663	45449368	45449719	+	26	351	8	L1HS	"COLO2T,COLO2N"	1005	244	"L1HS,L1MA2"				cXp45334487FS	TGAAACAAATGATAATGGAAACAC	cXp45334487ES	GATGAGTTCATATCCTTTGTAGGG
chrX	46817684	46817992	46932740	46933048	+	42	308	8	L1PA2	"COLO2T,COLO2N"	42	76	"MER90a,L1PA2,AluJo"				cXp46817838FS	CTTAAGCAATCCTCCTGTCTCAG	cXp46817838ES	CAAATGTCCAACAATGATAGACTG
chrX	47653723	47653992	47768779	47769048	-	920	269	9	L1PA3	"COLO2T,COLO2N"	352	263	"(TTTG)n,L1PA3,L1PREC2"		ZNF81		cXp47653857FS	TTGCATACATTCATTGAGCTTTAC	cXp47653857ES	AATACTATGCAGCCATAAGAAAGG
chrX	47976123	47976753	48091179	48091809	-	625	630	26	L1HS	"COLO2T,COLO2N"	1345	255	"L1HS,MER11C,(T)n,MER65-int,MER4B"				cXp47976438FS	TTTTTGTATTTTCAGTAGGGATGG	cXp47976438ES	CATATGTAACTAACCTGCACATGG
chrX	48140627	48140760	48255683	48255816	-	312	133	8	L1PA4	"COLO2T,COLO2N"	538	133	L1PA4				cXp48140693FS	AACCCCCGTCTCTACTAAAAATAC	cXp48140693ES	CAAATGTCCAACAATGATAGACTG
chrX	48215931	48216155	48330987	48331211	-	28	224	5	noL1	"COLO2T,COLO2N"	8	67					cXp48216043FS	TACACTCAGCATATTCACACACAC	cXp48216043ES	AGTGACTTTTAACAGATTTCACGG
chrX	49465091	49465249	49578353	49578511	-	31	158	2	L1PA3	"COLO2T,COLO2N"	1	65					cXp49465170FS	AAAACAAAACAAAAACAAAACAAAC	cXp49465170ES	TCATTCTCAGTAAACTATCGCAAG
chrX	49617463	49618006	49730723	49731266	-	232018	543	47	L1HS	"COLO2T,COLO2N"	167183	362	"L1HS,L1M5"		CLCN5		cXp49617734FS	GGCTTTATATATTGTTGGATTTGC	cXp49617734ES	ACACCGCATATTCTCACTCATAG
chrX	49670333	49670876	49783593	49784136	-	16522	543	29	L1HS	"COLO2T,COLO2N"	15329	444	"L1MD3,T-rich,L1HS,L1MA5A"		CLCN5		cXp49670604FS	AATGTTGAACTAGCCTTCCATAAC	cXp49670604ES	TGGGAGATATACCTAATGCTAGATG
chrX	49680138	49680561	49793398	49793821	-	14	423	3	L1PA4	"COLO2T,COLO2N"	41	358	"L1PA4,L1M5"		CLCN5		cXp49680349FS	TCTGTCTCTTTCTCTAATTTTGGG	cXp49680349ES	ATGATGAGTTCATGTCCTTTGTAG
chrX	49717524	49717778	49830784	49831038	+	12	254	3	L1PA2	"COLO2T,COLO2N"	3	68	L1PA2		CLCN5		cXp49717651FS	GTCCGGTAAAGAAAAATAAAATTG	cXp49717651ES	CAAATGTCCAACAATGATAGACTG
chrX	50717636	50717964	50700896	50701224	+	2034	328	5	L1PA6	"COLO2T,COLO2N"	1310	328	"L1M4c,L1PA6"				cXp50717800FS	GTTGGAAGAGTTAGAGAAGGATTG	cXp50717800ES	AAACTATGACAAGGACAGAAAACC
chrX	51719149	51719262	51702409	51702522	-	10	113	2	L1PA3	COLO2T	0	0	"L1PA3,L1M1"				cXp51719205FS	TTATAGGTGAAGTGTGTTTCTTGC	cXp51719205ES	CAAATGTCCAACAATGATAGACTG
chrX	51771762	51772189	51755022	51755449	+	34	427	4	L1PA5	"COLO2T,COLO2N"	106	66	"L1PA5,AluY"				cXp51771975FS	TTCTAAAGGGACAACTCCTAGATG	cXp51771975ES	CTGTAATCTCAGCACTTTGGAAG
chrX	54160752	54161918	54144027	54145193	-	1815	1166	25	L1HS	"COLO2T,COLO2N"	175	603	"AluSp,L1HS,AluSx1,MIRb,L1MD2"		FAM120C		cXp54161335FS	AAAGAAGCACAAGGAAGAATTATG	cXp54161335ES	TACATACTTACCAAAATGGCAATG
chrX	54761583	54761889	54744858	54745164	-	10	306	2	noL1	"COLO2T,COLO2N"	5	668	L1PA5				cXp54761736FS	TGGATTCCTAGGTGTTTTATTCTC	cXp54761736ES	TACCATTCCTTCTGAAACTATTCC
chrX	54836091	54836236	54819366	54819511	-	12	145	4	L1PA3	"COLO2T,COLO2N"	1	65	L2a		ITIH5L		cXp54836163FS	CAGAGACTGATGAGTTACAAGCAG	cXp54836163ES	AGGAGAATCCAACATGACTCTAAG
chrX	55290782	55291007	55274057	55274282	+	13	225	2	L1PA10	"COLO2T,COLO2N"	16	225	L1MA2				cXp55290894FS	TCTATGTCCTCTTCAATTTCCTTC	cXp55290894ES	ATTCAGGAACAGAAAATCAAACAC
chrX	55601546	55601924	55584821	55585199	-	8834	378	23	noL1	"COLO2T,COLO2N"	7450	439		"LINE:dbRIP,Ewing,Iskow,Stewart"			cXp55601735FS	ATCCTCCATAATAGCTGATCTCAC	cXp55601735ES	TTAAGGTTAATAAGTGGTTGACCC
chrX	56207849	56207964	56191124	56191239	-	144	115	12	L1HS	"COLO2T,COLO2N"	111	117	"L1HS,L3,(T)n"				cXp56207906FS	GAAAAGTAAACAAACCGTAACACC	cXp56207906ES	TTTGCTATTGTGAATAAAATGTGG
chrX	56370876	56371114	56354151	56354389	-	29	238	3	noL1	"COLO2T,COLO2N"	2	72	L1PA3				cXp56370995FS	GTGTATAAGCTTTTTGATGTGCTG	cXp56370995ES	ATGAAGGCAGAAATAAAGATGTTC
chrX	56413193	56413950	56396468	56397225	-	186	757	4	noL1	"COLO2T,COLO2N"	126	758	L1PA3				cXp56413571FS	TAGGTATATCTCCCAATGCTATCC	cXp56413571ES	AAAATGGGAGAAAATTTACACAAC
chrX	56624311	56624649	56607586	56607924	-	18	338	3	L1PA3	"COLO2T,COLO2N"	23	138	L1PA16				cXp56624480FS	ATATCTTCTGGCATGTAAGGTTTC	cXp56624480ES	ATTGAACAATGAGAACACATGAAC
chrX	56745017	56745517	56728292	56728792	+	200168	500	94	L1HS	"COLO2T,COLO2N"	153665	402	"L2a,L1HS"				cXp56745267FS	CACAACCTCCTTTTTATAGCTTTC	cXp56745267ES	TGGAAACCATCATTCTCAGTAAAC
chrX	57137383	57137501	57120658	57120776	+	73	118	2	L1PA2	"COLO2T,COLO2N"	49	86	"L1PBa1,L1PA7"				cXp57137442FS	CTCCTACAGCTCCTTTGATGTC	cXp57137442ES	TGTTTCCTGACATTTTAATGATTG
chrX	57208934	57209182	57192209	57192457	+	20	248	2	L1PA3	"COLO2T,COLO2N"	9	179	LTR1				cXp57209058FS	TATCAGCTCAATTAGACTGTCTGC	cXp57209058ES	TCATTCTCAGTAAACTATCGCAAG
chrX	57678740	57679007	57662015	57662282	+	26	267	3	L1PA2	"COLO2T,COLO2N"	11	65	"L1PA8,L1PA2,L1PA4"				cXp57678873FS	GAACTTCTTCCTGCTTTAGTCTTG	cXp57678873ES	AATGCTAGATGATGAGTTAGTGGG
chrX	58176158	58176466	58159433	58159741	-	165	308	9	L1PA2	"COLO2T,COLO2N"	127	308	"L1PA2,HSAT4,(T)n"				cXp58176312FS	CATTTTAATTATAGGGTCACCTGG	cXp58176312ES	TCATTCTCAGTAAACTATCGCAAG
chrX	58512272	58512623	58495547	58495898	+	3529	351	34	L1HS	"COLO2T,COLO2N"	2478	277	"(TAAAAA)n,L1HS,AT_rich,ALR/Alpha"				cXp58512447FS	ATGAATGCACACATCAGAAATAAG	cXp58512447ES	TCATTCTCAGTAAACTATCGCAAG
chrX	61610851	61611456	61694126	61694731	+	11	605	3	noL1	"COLO2T,COLO2N"	19	385	ALR/Alpha				cXp61611153FS	GTAGCACTCTCAGAAAACACTTTG	cXp61611153ES	TATGAAGTTCCTTCCTATACGACC
chrX	61961656	61961967	62044931	62045242	+	804	311	3	L1PA4	"COLO2T,COLO2N"	1530	309	"ALR/Alpha,L1PA4"				cXp61961811FS	GGATTCATTTCACAGAGTTAAACC	cXp61961811ES	TGTAAACTAGTTGAACCATTGTGG
chrX	62221522	62221962	62304797	62305237	+	143	440	6	noL1	"COLO2T,COLO2N"	347	73	MER50-int				cXp62221742FS	TTGGATTAGACATATGATGGAGTG	cXp62221742ES	TCCTTACTACCACTACCAGGAGAC
chrX	62975906	62976149	63059181	63059424	+	36	243	2	noL1	"COLO2T,COLO2N"	33	66	L1PA3	LINE:Ewing			cXp62976027FS	AAGTTTTTAACTTCTTTGCCTTTG	cXp62976027ES	CCACTCTAATACTTCGCTTTTCTG
chrX	62996886	62997016	63080161	63080291	-	14	130	2	L1PA4	"COLO2T,COLO2N"	6	301	"L1MB4,L1PA4"				cXp62996951FS	ATAGCTCACTGTAGCCTTGAACTC	cXp62996951ES	CAAATGTCCAACAATGATAGACTG
chrX	63149580	63149924	63232855	63233199	-	3556	344	13	L1HS	"COLO2T,COLO2N"	5388	357	"L1PA10,L1HS,(T)n"				cXp63149752FS	TGGTACTGGTACAAAAACAGACAC	cXp63149752ES	GATGAGTTCATATCCTTTGTAGGG
chrX	63250293	63250848	63333568	63334123	-	19124	555	34	L1HS	"COLO2T,COLO2N"	35134	630	"L1PA3,L1HS"				cXp63250570FS	CATTTCATCTTCCATCACTGATAC	cXp63250570ES	GAGGGATAGCATTGGGAGATATAC
chrX	63807076	63807279	63890351	63890554	+	22	203	5	L1PA3	"COLO2T,COLO2N"	11	354	L1PA12				cXp63807177FS	TTTTCAGTTTGTCTGCATAGAGAG	cXp63807177ES	TCATTCTCAGTAAACTATCGCAAG
chrX	64347739	64348037	64431014	64431312	+	3849	298	13	L1HS	"COLO2T,COLO2N"	2547	389	"L1PA11,L1P3,MIRb"				cXp64347888FS	ATTTTAAGTTGTTAGGCCAATCTG	cXp64347888ES	TCATTCTCAGTAAACTATCGCAAG
chrX	64594640	64594747	64677915	64678022	+	20	107	7	noL1	"COLO2T,COLO2N"	65	107	"SVA_E,L1PA4"				cXp64594693FS	CTGAGAGACAGTTTGTTGTGATTC	cXp64594693ES	CTGTGTGGATAGAAGTAGACATGG
chrX	65273033	65273606	65356308	65356881	-	5935	573	21	L1HS	"COLO2T,COLO2N"	2960	550	"L1MA1,L1HS,AT_rich"				cXp65273319FS	TAGAATGAGTTTCGAAGTATTCCC	cXp65273319ES	ACACCGCATATTCTCACTCATAG
chrX	65316790	65317323	65400065	65400598	-	3718773	533	84	L1HS	"COLO2T,COLO2N"	4353754	533	"L1PB1,L1HS"		HEPH		cXp65317056FS	TTTTTGTTTCATAGATCCTGTGTG	cXp65317056ES	TCATTCTCAGTAAACTATCGCAAG
chrX	65427634	65427820	65510909	65511095	-	42	186	3	L1PA3	"COLO2T,COLO2N"	55	121	L1MA1				cXp65427727FS	TTGTTTTTCAGATTAATCCCTGTAG	cXp65427727ES	ATAGACTGGATTGAGAAAATGTGG
chrX	66085101	66085472	66168376	66168747	+	54	371	6	L1PA2	"COLO2T,COLO2N"	56	371	"L1PA2,L1PA4,A-rich"				cXp66085286FS	TATATCTCCTAATGCTATCCCTCC	cXp66085286ES	AACTAGAAATACCATTTGACCCAG
chrX	66106779	66106903	66190054	66190178	-	78	124	2	L1PA7	"COLO2T,COLO2N"	132	124	"(TTA)n,L1PA7"				cXp66106841FS	GAAGCATACACAAGTATGAACAGC	cXp66106841ES	ATAGACTGGATGAAGAAAATGAGG
chrX	66306398	66306736	66389673	66390011	+	12086	338	13	L1HS	"COLO2T,COLO2N"	8221	342	"L1HS,L1PA3"				cXp66306567FS	AATGCAAATTGAAAATACAATGG	cXp66306567ES	GATGAGTTCATATCCTTTGTAGGG
chrX	67179882	67180403	67263157	67263678	+	71389	521	30	L1HS	"COLO2T,COLO2N"	63723	521	L1HS		OPHN1	OPHN1.L	cXp67180142FS	TTCAAAAAGTAAAAAGGTCCTCAC	cXp67180142ES	TCATTCTCAGTAAACTATCGCAAG
chrX	67269404	67269596	67352679	67352871	+	20	192	4	L1PA2	"COLO2T,COLO2N"	22	362			OPHN1		cXp67269500FS	CTCATACTCCTCCTGAATCTTGTC	cXp67269500ES	TAAACTATCGCAAGAACAACAAAC
chrX	69123815	69124146	69207090	69207421	+	24	331	6	L1PA2	"COLO2T,COLO2N"	24	268	"L1MDa,L1PA2,AT_rich"		EDA		cXp69123980FS	TGGAATAGAATCTTAACTTCTGGG	cXp69123980ES	ATGATGAGTTCATGTCCTTTGTAG
chrX	71627057	71627401	71710332	71710676	+	11	344	2	noL1	"COLO2T,COLO2N"	4	345	L1PA3		HDAC8		cXp71627229FS	TGCTTTCTAGATTTTCAGATGTTG	cXp71627229ES	GCTGCTATAAAGACACATGCATAC
chrX	71805709	71805982	71888984	71889257	-	182	273	7	L1PA4	"COLO2T,COLO2N"	90	300	"(TTG)n,L1PA4,MST-int"		PHKA1		cXp71805845FS	GACTCAAAAGTCCAAAATCTCATC	cXp71805845ES	TTCTCAGCAAACTATCACAGAGAC
chrX	72176448	72176557	72259723	72259832	+	24	109	2	L1PA2	"COLO2T,COLO2N"	7	65	L1M3				cXp72176502FS	TTGAGATCTGGTTGTTTAAAAGTG	cXp72176502ES	TGGAAAACATCATTCTCAGTAAAC
chrX	72230404	72230516	72313679	72313791	-	15	112	2	L1PA4	"COLO2T,COLO2N"	15	67	"L1M1,L1PA4"				cXp72230460FS	GAGAAAAATTCTGGATTGTGAAAG	cXp72230460ES	CTCACAATAGGAAAGACTTGGAAC
chrX	72523521	72523967	72606796	72607242	+	1065445	446	78	L1HS	"COLO2T,COLO2N"	696161	448	"L1M4b,L1HS"				cXp72523744FS	AATACCCTATTCTGTCATTTTTGG	cXp72523744ES	TCATTCTCAGTAAACTATCGCAAG
chrX	73027813	73028097	73111088	73111372	+	13	284	2	L1PA2	"COLO2T,COLO2N"	4	68	"L1PA2,AluSx1,L1PA15-16"				cXp73027955FS	GGTTCCATATGAACTTTAGGATTG	cXp73027955ES	TAGACTGGATTAAGAAAATGTGGC
chrX	74128995	74129230	74212270	74212505	+	301	235	8	L1HS	"COLO2T,COLO2N"	224	249	"L1MA1,L1HS"				cXp74129112FS	CTTCACTATTGTAAACAGTGCTGC	cXp74129112ES	CAAATGTCCAACAATGATAGACTG
chrX	74559044	74559393	74642319	74642668	-	707	349	12	L1PA3	"COLO2T,COLO2N"	677	349	L1PA3		ZDHHC15		cXp74559218FS	CCAGTTTAATCACTTCACACAAAC	cXp74559218ES	TTTAAAATGAGAACACATGGACAC
chrX	74573698	74573885	74656973	74657160	-	108	187	8	L1PA3	"COLO2T,COLO2N"	89	139	"L1PB1,L1PA3,AluY"		ZDHHC15		cXp74573791FS	TATCTTGAATAATGTTCCATGTGC	cXp74573791ES	GATGAGTTCATATCCTTTGTAGGG
chrX	74678139	74678388	74761414	74761663	+	32	249	3	L1PA3	"COLO2T,COLO2N"	5	65	"L1PA3,THE1D-int"				cXp74678263FS	AGGCTGAGGTAGTCTCAGATAAAG	cXp74678263ES	AACATCGCATATTCTCACTCATAG
chrX	74697493	74697865	74780768	74781140	-	103	372	12	L1PA3	"COLO2T,COLO2N"	124	373	"L1MA9,L1PA3,L1PA2"				cXp74697679FS	AGTTTGATCTCAGACTGCTGTG	cXp74697679ES	AGATGAGTTCATGCCCTTTTTAG
chrX	75139546	75139678	75222832	75222964	-	141	132	12	L1PA2	"COLO2T,COLO2N"	343	281	"L1PA2,L1PA12"				cXp75139612FS	AATGATTTAATATTGTCAGTGGGG	cXp75139612ES	CAAATGTCCAACAATGATAGACTG
chrX	75459316	75459646	75542912	75543242	-	2786	330	18	L1HS	"COLO2T,COLO2N"	3412	185	"L1HS,L1M1"				cXp75459481FS	TTATTTAACATGGTACAGGAAGCC	cXp75459481ES	GATGAGTTCATATCCTTTGTAGGG
chrX	75714420	75714574	75798016	75798170	-	13	154	2	L1PA2	"COLO2T,COLO2N"	43	216	L1PA3				cXp75714497FS	TCTTTTCTTCCTTATTTGTCTTGC	cXp75714497ES	GATGAGTTCATGTCCTTTGTAGTG
chrX	75786329	75786467	75869925	75870063	-	10	138	2	L1PA4	COLO2T	0	0	"L1P3,L1PA4"				cXp75786398FS	CTCAAGTGCACATAAAACATTCTC	cXp75786398ES	GAACTAGTTTACAGTCCCACCAAC
chrX	75865957	75866420	75949553	75950016	+	3657	463	21	noL1	"COLO2T,COLO2N"	2695	496	L1PB1	"LINE:Ewing,Iskow"	AK311342		cXp75866188FS	GGCTATGAACTTTTCTCTTAGCAC	cXp75866188ES	AAGAGACTCACCTACCACATAAGG
chrX	76025119	76025461	76108720	76109063	+	228	342	8	L1PA4	"COLO2T,COLO2N"	155	340	"L1PA4,L1PA6"		AK311342		cXp76025290FS	GTGGTCAATTTTAGAATACGTGTG	cXp76025290ES	ATGATGAGTTCATGTCCTTTGTAG
chrX	76328430	76328618	76412039	76412227	+	35	188	4	noL1	"COLO2T,COLO2N"	2	65	L1PA7	LINE:Iskow			cXp76328524FS	AGAAATAGGAACGCTTTTACACTG	cXp76328524ES	ATAAATCTTCAAACTGCTTTCCAC
chrX	76341579	76342004	76425186	76425622	-	701855	425	88	L1HS	"COLO2T,COLO2N"	687087	467	"L1HS,L1PA7"				cXp76341791FS	TAGTTTCAGAAGGAAAGGTACCAG	cXp76341791ES	GATGAGTTCATATCCTTTGTAGGG
chrX	76387176	76387511	76470792	76471127	+	13	335	2	L1PA3	"COLO2T,COLO2N"	14	216	"L1MA1,L1M4"				cXp76387343FS	TCTGATCTTGGAGTAAGCATTTAG	cXp76387343ES	TAATGCTAGATGACGAGTTAGTGG
chrX	77199888	77200370	77313232	77313714	-	29585	482	26	L1HS	"COLO2T,COLO2N"	46514	239	"L1HS,MER4A1,THE1D"				cXp77200129FS	AGAGGTTTAATTGACTCACAGTCC	cXp77200129ES	TAGATTCTGGATATTAGCCCTTTG
chrX	77995884	77996040	78109228	78109384	-	14	156	3	L1PA3	"COLO2T,COLO2N"	21	180	Charlie15a				cXp77995962FS	AAACACAGTTAATTTGCTAAAGGG	cXp77995962ES	TCATTCTCAGTAAACTATCGCAAG
chrX	78949292	78949564	79062636	79062908	-	53	272	5	L1PA2	"COLO2T,COLO2N"	132	247	"L1PA2,L1M1"				cXp78949428FS	TGGTCAAGAAGATACTTGAAATTG	cXp78949428ES	TGCAAATCATCATTCTCAGTAAAC
chrX	79679015	79679265	79792359	79792609	+	223	250	29	L1HS	"COLO2T,COLO2N"	268	246	"L1HS,(A)n,L1PA13"				cXp79679140FS	TTATCAGCTTAAGAAGATTTTGGG	cXp79679140ES	TCATTCTCAGTAAACTATCGCAAG
chrX	80989287	80989738	81102631	81103082	+	1133	451	6	L1HS	"COLO2T,COLO2N"	84	451	"L1MC3,L1HS"	LINE:dbRIP			cXp80989512FS	CTATTTCACAAAGATTCATCCTCC	cXp80989512ES	TCATTCTCAGTAAACTATCGCAAG
chrX	81062665	81062866	81176009	81176210	-	335	201	7	L1PA2	"COLO2T,COLO2N"	358	218	AT_rich				cXp81062765FS	TTGACAGCTGCTTTCTACAGTTAC	cXp81062765ES	AAAGTGTTCCTATTTCTCCACATC
chrX	81632892	81633366	81746236	81746710	-	5817	474	16	L1HS	"COLO2T,COLO2N"	230	473	"L1PB1,L1HS,L1M4"	LINE:dbRIP			cXp81633129FS	CAATGAGTGGATAAAGAAAATGTG	cXp81633129ES	TCATTCTCAGTAAACTATCGCAAG
chrX	81717628	81717810	81830972	81831154	-	24	182	2	L1PA4	"COLO2T,COLO2N"	55	199	L1M4b				cXp81717719FS	CATACACACTCCTTCTCTCATCAC	cXp81717719ES	ATGATGAGTTCATGTCCTTTGTAG
chrX	82201148	82201314	82314492	82314658	-	38234	166	23	L1HS	"COLO2T,COLO2N"	28616	167	"L1HS,Ricksha_c"	LINE:dbRIP			cXp82201231FS	TCTCAGTACCAGCAGCAAATATAC	cXp82201231ES	TCATTCTCAGTAAACTATCGCAAG
chrX	82690034	82690149	82803378	82803493	+	208	115	9	L1HS	"COLO2T,COLO2N"	70	222	L1HS				cXp82690091FS	TTATGGAAATCCTTTTTACAGACC	cXp82690091ES	CAAATGTCCAACAATGATAGACTG
chrX	83578012	83578290	83691356	83691634	+	25	278	6	L1PA2	"COLO2T,COLO2N"	47	362	"L1P1,L1PA2,L1MA5A"		HDX		cXp83578151FS	AAATGTTGAGAACTACAATGCCTC	cXp83578151ES	TCATTCTCAGTAAACTATCGCAAG
chrX	83860906	83861009	83974250	83974353	-	945	103	5	noL1	COLO2T	0	0	AT_rich				cXp83860957FS	TGATGAATTTAGCTCTCATCATTC	cXp83860957ES	ACAGACCTTTATCACTACTCCACC
chrX	83915010	83915596	84028354	84028940	-	30559	586	27	L1HS	"COLO2T,COLO2N"	23095	407	"L1HS,AT_rich"				cXp83915303FS	AAATATTGTGATAATGCTTCATGG	cXp83915303ES	CCTTGATAGAGTCATATTTTGATGG
chrX	84218987	84219102	84332331	84332446	-	11	115	2	noL1	"COLO2T,COLO2N"	2	65	L1PA6		"UNQ8193,APOOL"		cXp84219044FS	ATTAATGTCCCTCTAAAGCAGAAG	cXp84219044ES	ATTAGTTCAACCATTCTGGAAGAG
chrX	85496458	85496874	85609802	85610218	+	566	416	4	L1HS	"COLO2T,COLO2N"	116	437	"L1HS,L1PA15,(CAAAA)n"		DACH2		cXp85496666FS	GGGAATGCTTATACACTATTGGTC	cXp85496666ES	TCATTCTCAGTAAACTATCGCAAG
chrX	85587153	85588007	85700497	85701351	-	223930	854	54	L1HS	"COLO2T,COLO2N"	119694	854	"L1HS,L1MA6"		DACH2		cXp85587580FS	CATATGTAACTAACCTGCACAATG	cXp85587580ES	TAATGCTAGATGACACGTTAGTGG
chrX	85712677	85712951	85826021	85826295	-	20	274	2	L1PA10	"COLO2T,COLO2N"	7	274	L1M5		DACH2		cXp85712814FS	CTATGTAACAGACCTCACATCCTG	cXp85712814ES	AAGAATAAAAACCTTTCCTGTGTC
chrX	86444732	86444915	86558076	86558259	-	15	183	3	noL1	"COLO2T,COLO2N"	14	202	L1PA8A				cXp86444823FS	ATGGTACTGCCTAGGTTTTCTTC	cXp86444823ES	TCACAAGCATTCCTTTACATTAAC
chrX	86671888	86671990	86785232	86785334	-	44	102	3	L1PA2	"COLO2T,COLO2N"	18	65	"L1P1,L1PA2"		KLHL4		cXp86671939FS	AGAGATTCATTTTCTTTGAGGATG	cXp86671939ES	CAAATGTCCAAGAATGATAGACTG
chrX	86969152	86969653	87082496	87082997	-	7674	501	19	L1HS	"COLO2T,COLO2N"	3108	167	"L1M4c,L1MA4A,L1PA4"				cXp86969402FS	TAATGCTAGATGACACGTTAGTGG	cXp86969402ES	ACAATGAGAATATATGGACACAGG
chrX	87182553	87182898	87295897	87296242	+	2017	345	5	noL1	COLO2T	0	0	L1M2				cXp87182725FS	AGATACCTGTCATTTTTCTTCCAG	cXp87182725ES	GCTGCATGAAATACAAGTAAACAC
chrX	88859695	88860417	88973039	88973761	-	15	722	6	L1PA8	"COLO2T,COLO2N"	25	728	"L1PA8,L1MD1,L1PA7"				cXp88860056FS	GTATCTATGTAACAAACCAGCACG	cXp88860056ES	AGGGATAGCATTAGGAGAAATACC
chrX	89193999	89194173	89307343	89307517	+	14	174	2	L1PA4	"COLO2T,COLO2N"	3	65	"L1PA4,MER57A-int"				cXp89194086FS	GAATGCTTGTCAAATACAACAAAG	cXp89194086ES	TGGCACATATACACTATGGGATAC
chrX	90502788	90502911	90616132	90616255	+	16	123	2	L1PA3	"COLO2T,COLO2N"	22	163	"MER4-int,L1PA3"				cXp90502849FS	TTCATATTCTTTCTTCTGAGGAGG	cXp90502849ES	TCATTCTCAGTAAACTATCGCAAG
chrX	90835491	90835846	90948835	90949190	+	37	355	6	L1HS	"COLO2T,COLO2N"	20	355	"Tigger1,L1HS"	LINE:dbRIP			cXp90835668FS	ATTCCCTGGGACATAACAATATAC	cXp90835668ES	TTTCCAATAGAAGGCTATTTCATC
chrX	91362938	91363072	91476282	91476416	+	200	134	6	L1PA3	"COLO2T,COLO2N"	215	168	(CA)n		PCDH11X		cXp91363005FS	ACCCATAAAAGAGATTGTGAAAAG	cXp91363005ES	TGATGAGTTCATGTCCTTTGTAAG
chrX	92453400	92453674	92566744	92567018	+	829	274	17	L1HS	"COLO2T,COLO2N"	1467	278	"L1MA9,L1HS,L1M1,(A)n"				cXp92453537FS	ATCAAATTAATTACCACATCCACC	cXp92453537ES	ATGATGAGTTCATGTCCTTTGTAG
chrX	93087553	93087804	93200897	93201148	+	1449	251	15	L1PA2	"COLO2T,COLO2N"	1729	252	"L1PA2,L1PREC2"				cXp93087678FS	ACTAACTCGTCATTTATTGTGGG	cXp93087678ES	ATACACCATGGAATACTATGCAGC
chrX	93580065	93580547	93693409	93693891	-	11	482	2	L1PA3	COLO2T	0	0	"LTR9,AluY,L1MB7"				cXp93580306FS	GAAACCCCGTCTCTACTAAAAATAC	cXp93580306ES	TAATGCTAGATGACGAGTTAGTGG
chrX	94010091	94010322	94123435	94123666	+	29	231	2	L1PA3	"COLO2T,COLO2N"	39	231	L1MA3				cXp94010206FS	ACTTATGGGTTCTTTATGCAGTTC	cXp94010206ES	TCATTCTCAGTAAACTATCGCAAG
chrX	94581712	94581824	94695056	94695168	+	65	112	3	L1PA3	"COLO2T,COLO2N"	46	118					cXp94581768FS	AATATACACTATGGAATTGGGTGC	cXp94581768ES	TCATTCTCAGTAAACTATCGCAAG
chrX	94685501	94685830	94798845	94799174	-	11	329	5	L1PA3	"COLO2T,COLO2N"	6	72	"L1PA3,MLT2C1,AT_rich"				cXp94685665FS	AGGTTAAGACCAGCTTAGACAATG	cXp94685665ES	AACTAGAAATACCATTTGACCCAG
chrX	94743754	94744192	94857098	94857536	+	14654	438	37	L1HS	"COLO2T,COLO2N"	10504	449	"L1MA1,L1HS,AT_rich,(A)n"				cXp94743973FS	TTGGCATATAGAAATGCTACTGAC	cXp94743973ES	TCATTCTCAGTAAACTATCGCAAG
chrX	94951186	94951551	95064530	95064895	-	241	365	8	L1HS	"COLO2T,COLO2N"	957	367	"L1MEf,L1HS"				cXp94951368FS	ATAAAGTCAAATTCTGAGGTACGG	cXp94951368ES	TCATTCTCAGTAAATTATCGCAAG
chrX	94994443	94994649	95107787	95107993	+	51	206	5	L1PA3	"COLO2T,COLO2N"	17	358	"L1MA1,L1PA3"				cXp94994546FS	GTTTCATTTGTAATGTCTCCCTTC	cXp94994546ES	CAAATGTCCAACAATGATAGACTG
chrX	95199306	95199509	95312650	95312853	-	267	203	20	L1HS	"COLO2T,COLO2N"	641	213	"L1PA3,L1HS"	LINE:dbRIP			cXp95199407FS	ATTGGAATAGTTTCAGAAGGAATG	cXp95199407ES	GATGAGTTCATATCCTTTGTAGGG
chrX	95317364	95317686	95430708	95431030	+	150	322	6	L1PA3	"COLO2T,COLO2N"	57	299	LTR8A				cXp95317525FS	TATATCAGTGAGAAAATTATGGCG	cXp95317525ES	TCATTCTCAGTAAACTATCGCAAG
chrX	96997895	96998548	97111239	97111892	-	60	653	6	noL1	"COLO2T,COLO2N"	118	69	AluSx				cXp96998221FS	ATAGCCTGAAACAAACAACTTTTC	cXp96998221ES	CAACACCAAACAGACTAAGAGAAC
chrX	97559587	97560174	97672931	97673518	+	38	587	4	L1PA4	"COLO2T,COLO2N"	38	587	"AluJo,L1MB5,L1PA4"				cXp97559880FS	AGTTAGAGACCAACCTGGGTAAC	cXp97559880ES	AATGCTAAATGACAAGTTAATGGG
chrX	97829039	97829164	97942383	97942508	-	1249	125	5	L1PA2	"COLO2T,COLO2N"	838	123	"L1PA2,(T)n,L1PA7"	LINE:Ewing			cXp97829101FS	TACTTGATTGGCAATTTTATTTTG	cXp97829101ES	TATACACCGTGGAATACTATGCAG
chrX	98150556	98150971	98263900	98264315	-	1105	415	7	noL1	"COLO2T,COLO2N"	902	423	X2_LINE	"LINE:Ewing,Iskow,Stewart"			cXp98150763FS	ATAAGGAGCAGAATAGCAAAGATG	cXp98150763ES	AGACAATGTGTTTGTTCCTTTTC
chrX	99198297	99198623	99311641	99311967	+	23	326	3	L1PA4	"COLO2T,COLO2N"	1	65	"(TAAA)n,L1PA4"				cXp99198460FS	AAAGTGATACTTTCTCTGAATGGC	cXp99198460ES	AACTAGAAATACCATTTGACCCAG
chrX	99308218	99308428	99421562	99421772	+	11	210	4	L1PA2	"COLO2T,COLO2N"	8	74	"L1M1,L1PA2"				cXp99308323FS	TCCTATGGTTTCTTTAGGAAGTTG	cXp99308323ES	TACTATGCAGCCATAAAAATGATG
chrX	100147218	100147544	100260562	100260888	-	11	326	7	noL1	"COLO2T,COLO2N"	10	359	"Charlie10a,AluSz"				cXp100147381FS	ACACACCTGTAATCCCAGCTAC	cXp100147381ES	TTTGTATTTTTAGTAGAGACGGGG
chrX	101000259	101000766	101113603	101114110	+	14993	507	37	L1HS	"COLO2T,COLO2N"	11571	507	"(CA)n,L1HS"				cXp101000512FS	TCACATAAAAATTGAAGACTCCTG	cXp101000512ES	ATCCTCTCAGTAAACTATCGCAAG
chrX	101332347	101332709	101445691	101446053	-	313	362	17	L1PA3	"COLO2T,COLO2N"	489	378	"L1PA3,L1PA6"				cXp101332528FS	TTTAGAATAAGTGTGATGTGGTGC	cXp101332528ES	TGGAAATCATCATTCTCAGTAAAC
chrX	101829752	101830432	101943096	101943776	-	66	680	2	noL1	"COLO2T,COLO2N"	94	350	L1PA4				cXp101830092FS	TGAGATAATCATGTGGTTTTTGTC	cXp101830092ES	TAAAGGAACTAGAGAAGCAAGAGC
chrX	101918377	101918800	102031721	102032144	-	56	423	2	L1PA4	"COLO2T,COLO2N"	89	424	"L1MA2,L1PA4,AluYb8"		BC040959		cXp101918588FS	AGAGAAACTCCCATCTTTAAAACC	cXp101918588ES	ACAAGGTGAAACCCTGTCTCTAC
chrX	101952308	101952602	102065652	102065946	-	20	294	2	L1PA2	"COLO2T,COLO2N"	23	294	"L1PA2,L1MD"		BC040959		cXp101952455FS	TGGAGTGTTTAATTGAATTTTGTG	cXp101952455ES	ATGATGTGTTCATGTCCTTTGTAG
chrX	102249852	102250114	102363196	102363458	+	203844	262	66	noL1	"COLO2T,COLO2N"	144511	281	LTR54	"LINE:Ewing,Iskow,Stewart"			cXp102249983FS	TTTTTAGTAGAGACAGTTTTCGCC	cXp102249983ES	AACACATGAGACATATCCAAACAG
chrX	102666655	102666914	102779999	102780258	+	12	259	2	noL1	"COLO2T,COLO2N"	18	259		"LINE:Ewing,Stewart"			cXp102666784FS	GAGAGTAGAGCTGTGGACCTATTG	cXp102666784ES	GTAATGACTTCTGGTTTCTATGGC
chrX	103032561	103033117	103145905	103146461	-	371	556	4	L1PA2	"COLO2T,COLO2N"	418	554	"L1PA2,L1PA4,L1MA7"				cXp103032839FS	TGAAGAAAACACAGTGGAAATTAG	cXp103032839ES	ACCTAATGCTAGACGACGAGTTAG
chrX	103941745	103942094	104055089	104055438	+	86	349	5	L1PA3	"COLO2T,COLO2N"	71	348	"L1PA3,Charlie8,MLT1I"		IL1RAPL2		cXp103941919FS	CAATTAGGAATAGTGGATACTGGG	cXp103941919ES	ATGATGAGTTCATGTCCTTTGTAG
chrX	104035421	104035609	104148765	104148953	-	67	188	8	L1PA2	"COLO2T,COLO2N"	21	188	(TA)n		IL1RAPL2		cXp104035515FS	TTTTGTATTTTTAGTAGAAGCGGG	cXp104035515ES	AGGATGAGTTCATGTCCTTTGTAG
chrX	104939211	104939462	105052555	105052806	-	16	251	4	L1PA4	"COLO2T,COLO2N"	5	248	"L1PA4,L1PA7"				cXp104939336FS	AACTTGTTATTGGTCTATTCAGGG	cXp104939336ES	ATGATGAGTTCATGTCCTTTGTAG
chrX	105122654	105122853	105235998	105236197	-	507	199	14	L1PA2	"COLO2T,COLO2N"	379	750	"L1PA2,L1M4,L1MD,(TCCC)n"				cXp105122753FS	ATGTAAAACCTATGACCAAAGTGG	cXp105122753ES	TCATTCTCAGTAAACTATCGCAAG
chrX	105296026	105296194	105409370	105409538	-	11	168	2	L1PA2	"COLO2T,COLO2N"	11	168	"L1PA2,AT_rich,L1M5"				cXp105296110FS	TCCACATATATTTTTATCACCATTG	cXp105296110ES	CAAATGTCCAACAATGATAGACTG
chrX	105605152	105605705	105718496	105719049	+	176096	553	60	L1HS	"COLO2T,COLO2N"	214879	553	"AluSc8,L1HS,MER49"				cXp105605428FS	GCTGTCTAAACTACAAAAGGGAAG	cXp105605428ES	ACACCGCATATTCTCACTCATAG
chrX	105943363	105943802	106056707	106057146	-	7386	439	19	L1PA3	"COLO2T,COLO2N"	8816	372	L1PA3		"MORC4,TBC1D8B"	MORC4.L	cXp105943582FS	ACTCCAGGAGGGAGTATTTAGAAC	cXp105943582ES	ATTGAACAATGAGAACACATGAAC
chrX	106166156	106166651	106279500	106279995	+	52340	495	38	L1HS	"COLO2T,COLO2N"	37674	542	"L1HS,L1MB4"				cXp106166403FS	TCATAATAGATTGGTTCTGTGCTG	cXp106166403ES	TCATTCTCAGTAAACTATCGCAAG
chrX	106741813	106742139	106855157	106855483	-	212	326	12	L1HS	"COLO2T,COLO2N"	297	335	"L1HS,AluSq2"				cXp106741976FS	ATACTCATATCCAATGCAGAATGC	cXp106741976ES	TCATTCTCAGTAAACTATCGCAAG
chrX	108048271	108048418	108161615	108161762	-	13	147	2	L1PA3	"COLO2T,COLO2N"	3	65	L2c				cXp108048344FS	TAGCAGACTATTTTCCTAGCTGTG	cXp108048344ES	AAAAAGAAGAAATGAAGAACAAGG
chrX	108163831	108163997	108277175	108277341	+	9771	166	12	noL1	COLO2T	0	0	L1M1				cXp108163914FS	CTCTGTCTATCTCTCCCTTCCAAC	cXp108163914ES	AAGGCATCTTTTTCTGTGTAGTTC
chrX	108585785	108586253	108699129	108699597	+	1469	468	5	noL1	COLO2T	0	0	"L2a,MIRc"		GUCY2F		cXp108586019FS	GGAATGTTGTTTTTGAGTTTTAATC	cXp108586019ES	GTCCTCTTCTCTGTCCACACTAAC
chrX	108780672	108780836	108894016	108894180	+	53	164	3	L1PA3	"COLO2T,COLO2N"	41	280	L2a		ACSL4		cXp108780754FS	AACCAAATCATTTCTAAACTCGTC	cXp108780754ES	TCATTCTCAGTAAACTATCGCAAG
chrX	109352498	109352646	109465842	109465990	+	97	148	5	L1PA2	"COLO2T,COLO2N"	45	174	A-rich		AMMECR1		cXp109352572FS	CTAAATCAAATTCAGACCCAATTC	cXp109352572ES	TCATTCTCAGTAAACTATCGCAAG
chrX	109741774	109741975	109855118	109855319	+	11	201	2	L1PA3	COLO2T	0	0	L1PA7				cXp109741874FS	TAATCATATGGTTTTTGTCATTGG	cXp109741874ES	ATGATGAGTTCATGTCCTTTGTAG
chrX	110445914	110446482	110559258	110559826	+	70548	568	36	L1HS	"COLO2T,COLO2N"	44934	568	"L1HS,L1PREC2,AluSc"		DCX		cXp110446198FS	ATGTTTGTGCATTGATTTTGTATC	cXp110446198ES	GAGGGATAGCATTGGGAGATATAC
chrX	111115901	111116207	111229245	111229551	-	3950	306	13	noL1	"COLO2T,COLO2N"	11179	347	ERVL-B4-int	"LINE:Ewing,Iskow,Stewart"	TRPC5		cXp111116054FS	GACTCTGTTGTCCCTTATGGTAAC	cXp111116054ES	GACTTCTCTACCCTTGTCTGAGAG
chrX	111444281	111444397	111557625	111557741	-	5972	116	5	noL1	"COLO2T,COLO2N"	3312	116		"LINE:Ewing,Iskow,Stewart"	ZCCHC16		cXp111444339FS	TGTGAGAAAGTTATGCTCATCATC	cXp111444339ES	GAAGGTACATAAGAAAGGCAGAAG
chrX	113883064	113883467	113976808	113977211	-	5507	403	17	L1HS	"COLO2T,COLO2N"	9645	312	"L1MEf,L1HS"		HTR2C		cXp113883265FS	GAGCACTAAAATTTTGAAGAAACC	cXp113883265ES	TCATTCTCAGTAAACTATCGCAAG
chrX	116211570	116211979	116327542	116327951	+	30	409	3	noL1	"COLO2T,COLO2N"	83	409	"AluJb,L1MA2"				cXp116211774FS	TGGCATACAGATGTTCATAATACC	cXp116211774ES	CACAAAACAAGTCGTAAAACATTC
chrX	116579827	116580007	116695799	116695979	+	19	180	3	L1PA4	"COLO2T,COLO2N"	6	181	MLT1I-int				cXp116579917FS	TAATTTTAGGTCTTTTGGCTTTTG	cXp116579917ES	ATGATGAGTTCATGTCCTTTGTAG
chrX	116814645	116814960	116930617	116930932	-	12	315	3	noL1	"COLO2T,COLO2N"	66	65					cXp116814802FS	AATATAGTGTTCATTTGGTGAGCC	cXp116814802ES	TTTGTATTTTTAGTAGAGACGGGG
chrX	116859239	116859453	116975211	116975425	-	1611	214	17	L1PA2	"COLO2T,COLO2N"	1344	214	"(TTTTA)n,L1PA2"				cXp116859346FS	AAATTTCTTCATGGTGAAAGACTG	cXp116859346ES	TCATTCTCAGTAAACTATCGCAAG
chrX	116982135	116982549	117098107	117098521	+	5643	414	12	L1HS	"COLO2T,COLO2N"	1954	156	"L2a,L1HS"		KLHL13		cXp116982342FS	GGATGGATAGCATTAGGAGATATG	cXp116982342ES	ATGATGAGTTCATGTCCTTTGTAG
chrX	118452899	118453509	118568871	118569481	-	10711	610	27	L1HS	"COLO2T,COLO2N"	10195	414	"MER63A,L1HS,AT_rich,AluSz"	LINE:dbRIP	SLC25A43		cXp118453204FS	CAACATAGTGACACCACATCTCTG	cXp118453204ES	TGGGAGATATACCTAATGCTAGATG
chrX	119776534	119776839	119892506	119892811	-	843	305	11	noL1	"COLO2T,COLO2N"	936	434		"LINE:Ewing,Iskow,Stewart"			cXp119776686FS	ATAGTTCTGTTGATGCTTCTGTTG	cXp119776686ES	TCAAAATTGATTTGAACTTACTGC
chrX	120224944	120225381	120397263	120397700	-	314	437	16	L1HS	"COLO2T,COLO2N"	1031	435	"(CA)n,L1MA9,L1HS,Tigger4b"				cXp120225162FS	TGGATGAATATCTTCCTATTTTCC	cXp120225162ES	GATGAGTTCATATCCTTTGTAGGG
chrX	120323128	120323312	120495447	120495631	-	272	184	10	L1PA3	"COLO2T,COLO2N"	204	478	"L1PB1,L1PA3"				cXp120323220FS	AGTCTCCATACTGTTTTCCATAGC	cXp120323220ES	CAAATGTCCAACAATGATAGACTG
chrX	120690429	120690711	120862748	120863030	+	1114	282	14	L1PA2	"COLO2T,COLO2N"	1178	337	L1PA2				cXp120690570FS	CACAAACACCAAAATAGTTCTCAC	cXp120690570ES	TAGACTGGATTAAGAAAATGTGGC
chrX	122005340	122005749	122177659	122178068	-	1382	409	4	noL1	COLO2T	0	0	MIRb				cXp122005544FS	CATGAGTTCCATCTTTTGTAACTG	cXp122005544ES	ACTCAGAGAAGTAAAGTTGCTTGG
chrX	122341000	122341223	122513319	122513542	-	41	223	7	L1PA4	"COLO2T,COLO2N"	19	228	L1PA4		GRIA3		cXp122341111FS	TCCTAACTTCTATCACCCTACCAC	cXp122341111ES	AGGATGAGTTCATGTCCTTTGTAG
chrX	122492133	122492587	122664452	122664906	-	37780	454	59	noL1	"COLO2T,COLO2N"	41117	396	L1PA11	"LINE:Ewing,Iskow"			cXp122492360FS	TATTCTGTTCCATTGGTCTATGTG	cXp122492360ES	TCAACATTCCTTCATGTTAGAAAC
chrX	122696466	122696880	122868785	122869199	+	11	414	4	noL1	"COLO2T,COLO2N"	84	414	"SVA_D,L1PA5,(A)n"				cXp122696673FS	GTATATATCCTAATGCTATCGCCC	cXp122696673ES	ATCCTGTTGATCTATGACCTTACC
chrX	123943428	123943823	124115747	124116142	+	100	395	13	L1HS	"COLO2T,COLO2N"	211	393	"L1HS,(A)n"				cXp123943625FS	CAGAGATGTCTTCTTCAAATACCC	cXp123943625ES	AACACTGAATGCAATATGTTTGAC
chrX	124005662	124006146	124177981	124178465	+	16	484	8	L1PA2	"COLO2T,COLO2N"	38	485	"AluJr,L1PA2,A-rich"				cXp124005904FS	AAGGACTTGGATTTAATAGACGTG	cXp124005904ES	TCATTCTCAGTAAACTATCGCAAG
chrX	124905569	124906219	125077888	125078538	+	252318	650	65	L1HS	"COLO2T,COLO2N"	366167	645	"L1HS,L3"	LINE:dbRIP			cXp124905894FS	CTCTGTTCAAAAATTTCCAGTTTC	cXp124905894ES	TTTTTAAAACACTATGAAGGCCAG
chrX	125115043	125115353	125287362	125287672	-	41	310	2	L1PA3	"COLO2T,COLO2N"	36	65	L1PA3				cXp125115198FS	TAAAAGAAGTTTAATTGGCAGTCC	cXp125115198ES	AAACTAGTTCAACCATTCTGGAAG
chrX	126104642	126105071	126276961	126277390	+	126	429	4	L1PA7	"COLO2T,COLO2N"	201	429	"L1MC1,L1PA7"				cXp126104856FS	TAAGGTACCAGTTTTCTTCTCCAG	cXp126104856ES	TCATTCTCAGCAAACTAAGACAAG
chrX	126329847	126330022	126502166	126502341	+	123	175	6	L1HS	"COLO2T,COLO2N"	85	346	"MSTA-int,L1HS"				cXp126329934FS	AACAGGAAGATAAAGGAACATTTG	cXp126329934ES	CAAATGTCCAACAATGATAGACTG
chrX	126549060	126549222	126721379	126721541	+	33	162	6	L1PA3	"COLO2T,COLO2N"	42	129	"L1PA3,FRAM"				cXp126549141FS	ATCTCTCTGTGGAATCATTTTGTC	cXp126549141ES	ATAGACTGGATTAAGAAAACGTGG
chrX	126575190	126575441	126747509	126747760	+	18	251	3	L1PA3	"COLO2T,COLO2N"	10	214					cXp126575315FS	CACCTTCAATAAAGCCAAGTAAAC	cXp126575315ES	TCATTCTCAGTAAACTATCGCAAG
chrX	127880025	127880228	128052344	128052547	+	57	203	3	L1PA5	"COLO2T,COLO2N"	49	222	"L1PA2,L1PA5"				cXp127880126FS	AACATTGTAGAAAATCCAGTCTTTG	cXp127880126ES	AAACTATCGCAAGAACAAATAACC
chrX	128370297	128370408	128542616	128542727	-	12	111	2	L1PA3	"COLO2T,COLO2N"	19	110	(A)n				cXp128370352FS	AATGCTAGATGATGAGTTAGTGGG	cXp128370352ES	AGCATGATTTATTTCCTTTTCATC
chrX	129352514	129352951	129524833	129525270	-	4986	437	12	noL1	"COLO2T,COLO2N"	683	254	"(TA)n,AluSx1,Tigger3a"	"LINE:dbRIP,Ewing,Iskow,Stewart"			cXp129352732FS	TTCCAAGATATGTTGTTGATTGAC	cXp129352732ES	ATATACCCCAGATGTACAGTAGGC
chrX	129440307	129440461	129612626	129612780	+	1080	154	5	L1PA3	"COLO2T,COLO2N"	1417	153	"L1PA3,L1PA7"		BC043223		cXp129440384FS	CATAAACCAGTAGAGAGTGTGTGG	cXp129440384ES	ATGATGAGTTCATGTCCTTTGTAG
chrX	129485006	129485399	129657325	129657718	+	60	393	8	L1HS	"COLO2T,COLO2N"	38	393	"MADE1,L1HS"		BC043223		cXp129485202FS	TCTTGACTGCTCAGCTTTCAGC	cXp129485202ES	TCATTCTCAGTAAACTATCGCAAG
chrX	129783309	129783609	129955628	129955928	+	10	300	6	L1PA2	"COLO2T,COLO2N"	20	79	"AluJb,L1PA2,(A)n"		ENOX2		cXp129783459FS	ACCATCTGTACATTCAAGCCTTAC	cXp129783459ES	TCATTCTCAGTAAACTATCGCAAG
chrX	129910102	129910607	130082421	130082926	-	15184	505	26	L1HS	"COLO2T,COLO2N"	9934	494	"L1HS,MIR,MER91A"				cXp129910354FS	GAAAAGCCATCATTTTCTAATCTG	cXp129910354ES	TCATTCTCAGTAAACTATCGCAAG
chrX	129926658	129926961	130098977	130099280	+	170	303	6	L1PA2	"COLO2T,COLO2N"	115	383	"GA-rich,MER31A"				cXp129926809FS	TCCTCTTAGTAATTTTCCATCCAC	cXp129926809ES	TCATTCTCAGTAAACTATCGCAAG
chrX	129968145	129968649	130140464	130140968	+	149501	504	99	L1HS	"COLO2T,COLO2N"	109052	433	"L2,L1HS,AT_rich,MER5B"				cXp129968397FS	CAGAAGAGCTACTCTTTGAAGGAC	cXp129968397ES	ACACCGCATATTCTCACTCATAG
chrX	130084489	130084823	130256808	130257142	-	23	334	3	L1PA4	"COLO2T,COLO2N"	26	264	"L1PA4,L1ME2"				cXp130084656FS	AGTGCCCTTCATTTCTTTATGTAG	cXp130084656ES	TAAACTATCGCAAGGACAAAAATC
chrX	130474626	130474920	130646945	130647239	+	20	294	5	L1PA4	"COLO2T,COLO2N"	22	209	"L1PREC2,L1PA4"		IGSF1		cXp130474773FS	AGCAAAGACCCTAAGTGCTTTAAC	cXp130474773ES	AAAATGATGAGTTCATGTCCTTTC
chrX	131110678	131110920	131282997	131283239	+	17	242	3	L1PA2	"COLO2T,COLO2N"	3	65	"L1M4b,Tigger3"				cXp131110799FS	TTATTGCTGTTTACCTATTCCTCC	cXp131110799ES	AGGAAGAAAAAGGGACATACTTG
chrX	131159115	131159268	131331434	131331587	+	21	153	2	L1PA2	"COLO2T,COLO2N"	1076	334	L1PA2				cXp131159191FS	CCTCCTCTTAGGGAATTCTTACTC	cXp131159191ES	TAGTCTGGATTAAGAAAATGTGGC
chrX	131683867	131684604	131856186	131856923	+	11	737	4	noL1	"COLO2T,COLO2N"	26	737	"L1MA2,AluY"		HS6ST2		cXp131684235FS	TCCTTTGAATTTTTCCACTATCAG	cXp131684235ES	AAAAGAACCAGAGAAACAAGAGC
chrX	133030848	133031019	133203182	133203353	+	58	171	7	L1PA3	"COLO2T,COLO2N"	50	171	"(TAA)n,L1PA3,MLT1C"				cXp133030933FS	TTCAGCCTGCATAGTGTTAAATAG	cXp133030933ES	TAACCCTCAGTATCTGTGAATGTG
chrX	133989652	133990137	134161986	134162471	+	1151	485	15	L1HS	"COLO2T,COLO2N"	1139	585	"L1HS,L1PB2"				cXp133989894FS	AGTGGTGATTTCTGAGATTTTAGG	cXp133989894ES	TCATTCTCAGTAAACTATCGCAAG
chrX	136937770	136937998	137110104	137110332	+	12705	228	6	noL1	COLO2T	0	0	L1PA16				cXp136937884FS	AAGCAGGTATCATTCTTTCATTTC	cXp136937884ES	AAAAATACAAAAATTAGCCAGGTG
chrX	138532708	138532967	138705042	138705301	+	74	259	4	noL1	"COLO2T,COLO2N"	54	265	L1PA4		MCF2		cXp138532837FS	TTTTCAGTCTCTGTGTTAGTTTGC	cXp138532837ES	ATGAAGCTAGAAACCATCATTCTC
chrX	139145204	139145890	139317538	139318224	-	32	686	3	noL1	"COLO2T,COLO2N"	15	698	L1PA5				cXp139145547FS	TATATCTCCTAATGCTATCCCTGC	cXp139145547ES	TGCACTACAAAAGAAACTACCATC
chrX	140038805	140039180	140211139	140211514	-	173	375	6	L1HS	"COLO2T,COLO2N"	180	435	"L1HS,L1MEc"				cXp140038992FS	GAACGACAAATACCTTGAAAAGAC	cXp140038992ES	TCATTCTCAGTAAACTATCGCAAG
chrX	140340493	140340646	140512827	140512980	+	15	153	2	noL1	"COLO2T,COLO2N"	4	295	L1MB5		SPANX		cXp140340569FS	TATGATGTCTTTATCTGGTTTTGG	cXp140340569ES	GAAACCCCGTCTCTACTAAAAATAC
chrX	141399246	141400135	141571580	141572469	+	8333	889	13	L1HS	"COLO2T,COLO2N"	5042	302	"MER5A1,L1HS,(A)n,(TAAAA)n"	LINE:dbRIP			cXp141399690FS	CTACAAACCAATAGATTTCAACCC	cXp141399690ES	TGGGAGATATACCTAATGCTAGATG
chrX	143173466	143173584	143345783	143345901	+	10	118	2	L1PA4	"COLO2T,COLO2N"	1	65	L1MA4A				cXp143173525FS	GCAAACAGTGCTGTAGTGAATATC	cXp143173525ES	AACACCACATGTTCTCACTCATAG
chrX	143237589	143238127	143409903	143410441	+	821	538	10	L1HS	"COLO2T,COLO2N"	216	406	"L2c,AT_rich,MER53"	LINE:dbRIP			cXp143237858FS	AATGTCATTTTCTTTAGTCAAGGG	cXp143237858ES	TGGGAGATATACCTAATGCTAGATG
chrX	143856866	143857383	144049174	144049691	+	13	517	2	noL1	"COLO2T,COLO2N"	7	517	"L1PA3,AT_rich,L1MA4"				cXp143857124FS	TCTATCAAACTGTATTTTTGTGCC	cXp143857124ES	TACCCAAAGGACTATAAATCATGC
chrX	143996777	143996969	144189085	144189277	+	140	192	9	L1PA2	"COLO2T,COLO2N"	119	201	"L2a,L1PA2"				cXp143996873FS	GTCATTTATATAGCAAGTGCCAAG	cXp143996873ES	ACAGACTGGATTAAGAAAATGTGG
chrX	144246273	144246650	144438581	144438958	-	122	377	6	L1PA3	"COLO2T,COLO2N"	66	388	"L1PA3,L1PA12"				cXp144246461FS	ATAAGTGAGAACATGTGGTGATTG	cXp144246461ES	ATGATGAGTTCATGTCCTTTGTAG
chrX	144865113	144865552	145057421	145057860	+	17055	439	22	L1HS	"COLO2T,COLO2N"	16577	439	"HERVIP10F-int,L1HS"				cXp144865332FS	TATTCAGCAGAGTGTCCAGTAAAG	cXp144865332ES	TCATTCTCAGTAAACTATCGCAAG
chrX	145058598	145058720	145250906	145251028	-	17	122	3	L1PA4	COLO2T	0	0	"L1MA4,L1PA4"				cXp145058659FS	ATTTTGCACATACAATTAAGGTCC	cXp145058659ES	ACGGAGGTTAAGAGTATAATGGTG
chrX	145619672	145619797	145811980	145812105	-	795	125	19	L1PA3	"COLO2T,COLO2N"	199	227	"(TTCTC)n,AluSx"				cXp145619734FS	TTTTGTTTATCCATTCATCATTTG	cXp145619734ES	TCATTCTCAGTAAACTATCGCAAG
chrX	146548915	146549332	146741223	146741640	+	12358	417	39	L1HS	"COLO2T,COLO2N"	10171	418	"L1HS,(A)n"	LINE:dbRIP			cXp146549123FS	ATGTTTTTCTACCTCTGGACTCTG	cXp146549123ES	GATGAGTTCATATCCTTTGTAGGG
chrX	147058826	147059320	147251134	147251628	-	123	494	7	L1HS	"COLO2T,COLO2N"	63	493	"L1HS,L1PA4"				cXp147059073FS	ATCCTCAATAAAATACTGGCAAAC	cXp147059073ES	TCATTCTCAGTAAACTATCGCAAG
chrX	147860832	147861035	148053138	148053346	-	512	203	12	L1HS	"COLO2T,COLO2N"	81	203	"L1HS,(T)n"		AFF2		cXp147860933FS	AGTATACATAGGCAGATAGGTGGC	cXp147860933ES	TCATTCTCAGTAAACTATCGCAAG
chrX	149371243	149371397	149620585	149620739	-	10	154	3	L1PA2	"COLO2T,COLO2N"	20	233			MAMLD1		cXp149371320FS	ATATGGCACATAGTAAATGCTCAG	cXp149371320ES	TCATTCTCAGTAAACTATCGCAAG
chrX	149599181	149599307	149848523	149848649	+	18	126	4	L1PA4	"COLO2T,COLO2N"	4	65	"AT_rich,L1PA4"				cXp149599244FS	CTTAATTCCCCTTTGCTATGTAAC	cXp149599244ES	TTCAATACTATCTTAGGTCCCAGC
chrX	150255434	150255539	150504776	150504881	+	69	105	2	L1HS	"COLO2T,COLO2N"	41	111	L1HS				cXp150255486FS	AAAACAAACAAACAAACCAAAAAC	cXp150255486ES	CAAATGTCCAACAATGATAGACTG
chrX	150585499	150585845	150834843	150835189	-	14	346	3	noL1	"COLO2T,COLO2N"	14	65	L1PA4		PASD1		cXp150585672FS	ACCTTGTTTATATGCATGGTATCC	cXp150585672ES	GCTAGAGAGGATGTGGAGAAATAG
chrX	151279794	151280138	151529138	151529482	+	80004	344	58	L1HS	"COLO2T,COLO2N"	43831	306	"L1HS,(A)n,AluJr4"		GABRA3		cXp151279966FS	TACAATCACTGCATGTTTTCTTTC	cXp151279966ES	TTTTAATGATTGCCATTCTAACTG
chrX	153409896	153410610	153756702	153757416	+	14	714	3	noL1	"COLO2T,COLO2N"	12	1054	"AluSg,AluSx,AluSc"				cXp153410253FS	TTTTTGAGATGGAGTTTTGCTC	cXp153410253ES	TACAAAAATTAGCTGTGTGTGCTG
chrX	154398673	154398929	154745479	154745735	-	19967	256	40	L1HS	"COLO2T,COLO2N"	27159	330	"L1HS,MER58C,MER58A"		TMLHE		cXp154398801FS	CTACTTATCTTCATTCCCTCCAAC	cXp154398801ES	CAAATGTCCAACAATGATAGACTG
chrX	154582826	154583550	154929632	154930356	-	120	724	22	L1HS	"COLO2T,COLO2N"	138	714	"L1HS,L1MB5"				cXp154583188FS	AGAAAGGAACAAAGACACATTCTC	cXp154583188ES	TGGGAGATATACCTAATGCTAGATG
chrY	3377552	3377694	3317552	3317694	+	601151	142	66	L1HS	"COLO2T,COLO2N"	532589	141	"L1HS,(A)n"				cYp3377623FS	AGATGTTTGGGTCAAAGTAAAGAG	cYp3377623ES	CGTATGTTTATTGTGGCACTATTC
chrY	4876774	4877016	4816774	4817016	-	66	242	7	L1HS	"COLO2T,COLO2N"	120	116	L1HS				cYp4876895FS	GACACATTGTCATAAAGTCAGAGG	cYp4876895ES	TCATTCTCAGTAAACTATCGCAAG
chrY	4907154	4907469	4847154	4847469	+	15	315	2	noL1	"COLO2T,COLO2N"	6	315	L1PA3				cYp4907311FS	CATTTATCTACTTCATGGGTCTCC	cYp4907311ES	AACTAGAAATACCATTTGACCCAG
chrY	5068727	5069170	5008727	5009170	-	18494	443	10	L1HS	"COLO2T,COLO2N"	10236	444	L1HS		PCDH11Y		cYp5068948FS	GGAAGAATATGTTTATTTTGCACC	cYp5068948ES	AACTAGAAATACCATTTGACCCAG
chrY	7234177	7234523	7174177	7174523	-	169	346	8	L1PA4	"COLO2T,COLO2N"	405	346	"L1PA4,AluSz"		PRKY		cYp7234350FS	TAGGATAGAATTCTTGAGCTCCC	cYp7234350ES	TCATTCTCAGCAAACTATCTCAAG
chrY	8469174	8469618	8409174	8409618	+	2032	444	19	L1PA2	"COLO2T,COLO2N"	4174	222	"HERVE_a-int,L1PA2"				cYp8469396FS	ATGTAAAAGTACTGGCCTAACAGC	cYp8469396ES	ATTAGATCCCATTTGTCAGTTTTG
chrY	10039422	10039935	9429422	9429935	+	204	513	15	L1HS	"COLO2T,COLO2N"	365	468	"L1HS,L1PA3"				cYp10039678FS	ATTTCATCTTCTATCGCTGATACC	cYp10039678ES	TCATTCTCAGTAAACTATCGCAAG
chrY	10394710	10394917	9784710	9784917	+	1352	207	9	L1HS	"COLO2T,COLO2N"	116	445	"L1HS,L1M4"				cYp10394813FS	TGAAAGCTACACAGTTTTAAGAGG	cYp10394813ES	CAAATGTCCAACAATGATAGACTG
chrY	10432881	10432990	9822881	9822990	+	82	109	5	L1PA4	"COLO2T,COLO2N"	27	120	L1PA4				cYp10432935FS	TCTCACTCCTTGGAATGAAGTATC	cYp10432935ES	TCATTAAGAAACACATAAATTGGC
chrY	10669327	10669669	10059327	10059669	+	10	342	3	L1PA2	"COLO2T,COLO2N"	14	325	"L1PA2,ALR/Alpha"				cYp10669498FS	ACTTCTTTTTGATGTGTGCATTC	cYp10669498ES	TCATTCTCAGTAAACTATCGCAAG
chrY	11950000	11950583	13490000	13490583	+	13	583	4	noL1	"COLO2T,COLO2N"	6	893	"Tigger3d,L1ME2z,BSR/Beta,L1MC5"	"Alu:Hormozdiari,LINE:Ewing"			cYp11950291FS	TTTCAAGATAATAACGATGTGCTG	cYp11950291ES	ACACCTCTAGCTCTCTTTGCC
chrY	12006668	12007078	13546668	13547078	-	903	410	18	L1HS	"COLO2T,COLO2N"	7	381	"L1HS,L1ME1"				cYp12006873FS	TGGATTTAGAAAGAAAGTTTTCAAAG	cYp12006873ES	TCATTCTCAGTAAACTATCGCAAG
chrY	12388547	12388885	13878547	13878885	+	858	338	10	L1HS	"COLO2T,COLO2N"	344	350	L1HS	LINE:Ewing			cYp12388716FS	GTTATAGGGCAACATCATCTATCC	cYp12388716ES	GAAATTGGAAACCATCATTCTTAG
chrY	12569009	12569214	14059009	14059214	+	260	205	2	L1PA4	"COLO2T,COLO2N"	453	205	"MER1A,L1MB5,L1PA4"				cYp12569111FS	ACTCACCATCATGTAGAATCAGTG	cYp12569111ES	TAGACTGGATTAAGAAAATGTGGC
chrY	13751760	13752140	15242366	15242746	-	933	380	3	noL1	"COLO2T,COLO2N"	783	66	L1PA3				cYp13751950FS	CCATGATAGCCTAAAAGGACATAG	cYp13751950ES	AACTAGAAATACCATTTGACCCAG
chrY	14717358	14717630	16207964	16208236	-	65	272	2	noL1	"COLO2T,COLO2N"	77	68	L1PA3				cYp14717494FS	TCATGATATTGATTCTTCCTACCC	cYp14717494ES	AAATATCCTCAATAAAACACTGGC
chrY	15786251	15786410	17276857	17277016	+	513	159	7	L1PA3	"COLO2T,COLO2N"	353	589	"THE1C,L1PA3"				cYp15786330FS	GTAGCTCGGACTACAGACATGAG	cYp15786330ES	CAAATGTCCAACAATGATAGACTG
chrY	16293487	16293948	17784093	17784554	-	708	461	12	L1PA3	"COLO2T,COLO2N"	1102	245	"L1P3,L1PA3"				cYp16293717FS	AATTTCAGAACTTGTTATTGGTCC	cYp16293717ES	TACCCAAAGGACTATAAATCATGC
chrY	16346625	16347194	17837231	17837800	-	125	569	6	noL1	"COLO2T,COLO2N"	206	78	L1PA3				cYp16346909FS	TTTGTATTTCTTTTGGATTGGTG	cYp16346909ES	ACAAAGAGACTTAGACTCCCACAC
chrY	17539195	17539486	19029801	19030092	+	242	291	4	L1PA2	"COLO2T,COLO2N"	158	66	"L1P3,L1PA2"				cYp17539340FS	AAAACCATAATATGATGCCATCTC	cYp17539340ES	TCAGGGATCTAGAACTGGAAATAC
chrY	17996025	17996387	19486631	19486993	-	16729	362	54	L1HS	"COLO2T,COLO2N"	19551	429	"L1HS,AluJo,(T)n"				cYp17996206FS	TCTACTTTTCCCATCTTTATGTCC	cYp17996206ES	GATGAGTTCATATCCTTTGTAGGG
chrY	20033849	20034267	21574461	21574879	-	32	418	3	L1PA12	"COLO2T,COLO2N"	26	512	"L1PA3,(TTA)n,HERVH-int"				cYp20034058FS	AATTTTCCTTTACCTACCCAAATC	cYp20034058ES	TCAGGGAACTAGAACTGGAAATAC
chrY	20289490	20289623	21830102	21830235	+	77	133	7	L1PA3	"COLO2T,COLO2N"	57	83	"L1PA10,L1PA3,(A)n"				cYp20289556FS	TCTATTATTTTTGGGTGGAGAGTC	cYp20289556ES	ATGATGAGTTCATGTCCTTTGTAG
chrY	20298916	20299401	21839528	21840013	-	7744	485	45	L1HS	"COLO2T,COLO2N"	9298	1077	"L1HS,(T)n"				cYp20299158FS	CTATATTTAGCCATTTGACACACG	cYp20299158ES	TCATTCTCAGTAAACTATCGCAAG
chrY	21044214	21044355	22634826	22634967	-	18	141	5	L1HS	"COLO2T,COLO2N"	2	66	"L1HS,(TTTA)n"		TTY10		cYp21044284FS	ATCTTTTTGGAAGTTAACAGTTGG	cYp21044284ES	GGCACTATTCACAATAGCAAAGAC
chrY	21176837	21177759	22767449	22768371	+	22	922	8	L1PA14	"COLO2T,COLO2N"	28	867	L1PA6				cYp21177298FS	CTTTAAGAACTGCAACAAGACAAG	cYp21177298ES	TCTCAAAAGAAGACATTTATGCAG
chrY	21261540	21261662	22852152	22852274	-	3174	122	16	L1HS	"COLO2T,COLO2N"	4449	395	"L1HS,L1PA6"				cYp21261601FS	CTTTGTTATTGTGAATAGTGCTGC	cYp21261601ES	TACCCAAAGGACTATAAATCATGC
chrY	21398719	21398971	22989331	22989583	+	28	252	6	L1PA3	"COLO2T,COLO2N"	359	243	"L1PA3,L1PA15"				cYp21398845FS	ATTGAGACCATCCTGGCTAAC	cYp21398845ES	AAACCCTGGAAGATAACCTAGAAG
chrY	21529685	21530013	23120297	23120625	-	32005	328	42	L1HS	"COLO2T,COLO2N"	85549	328	"L1HS,MER41A"				cYp21529849FS	TTTTAGTAGAGATGGGATTTCACG	cYp21529849ES	TCATTCTCAGTAAACTATCGCAAG
chr1	31795597	31796183	32023010	32023596	-	10	586	4	noL1	COLO2N	0	0	"L1MEg,AluY,AluYb8"		TINAGL1		c1p31795890FS	TGCTTTCATCTGAGATCATTTTAC	c1p31795890ES	GAAACCCCGTCTCTACTAAAAATAC
chr1	34816485	34816626	35043898	35044039	-	33	141	2	noL1	COLO2N	0	0	L2a				c1p34816555FS	GACAAGAGCAAAACTCCATCTC	c1p34816555ES	TCAAGGATTAGTCCTAGGTTTCTG
chr1	48941430	48941602	49168843	49169015	+	11	172	3	noL1	COLO2N	0	0	L1M6		AGBL4		c1p48941516FS	TTCCTACCTGTGTGTTCACATAAC	c1p48941516ES	TAGAAGTTGACCCTGGAGTAAAAC
chr1	51334101	51334270	51561513	51561682	+	12	169	3	noL1	COLO2N	0	0	L1MA5A				c1p51334185FS	GGATATTTTCTAGAACTGTGGGTG	c1p51334185ES	CTTGAGTGAACATAGGTGGTAGC
chr1	65606855	65606989	65834267	65834401	-	12	134	3	noL1	COLO2N	0	0	CT-rich		DNAJC6		c1p65606922FS	AGTGGAGTCATTTCTTGCCTATAC	c1p65606922ES	TTAGGCAAATAAAGAAGAAGATGG
chr1	85289432	85290073	85516844	85517485	-	12	641	2	noL1	COLO2N	0	0	"AluSx,Tigger3b"				c1p85289752FS	GTTTCTGGACTTGTCAGTGAGTC	c1p85289752ES	CAAAAACACAGACATTAGCATAGG
chr1	91455028	91455265	91682440	91682677	+	14	237	7	L1PA2	COLO2N	0	0	"MER51-int,L1PA2,AT_rich"				c1p91455146FS	TTACAAATTTTGGAGAAACTAGGC	c1p91455146ES	TCATTCTCAGTAAACTATCGCAAG
chr1	98194558	98194660	98421970	98422072	+	19	102	3	noL1	COLO2N	0	0	L1ME3A				c1p98194609FS	TCAGTTGGATATTGTTTCATTGTC	c1p98194609ES	ACTTTACTCACTCTGTCTTCCTGG
chr1	102341563	102341898	102568975	102569310	+	275	335	6	noL1	COLO2N	0	0	"MER4-int,LTR8"	"LINE:dbRIP,Ewing,Stewart"			c1p102341730FS	TAAATCCTTCTTGCTTCTAACCTC	c1p102341730ES	TTGATTTTCACCTGAGTTGTTTC
chr1	105357646	105358008	105556123	105556485	-	10	362	4	noL1	COLO2N	0	0	"L1MC3,AluSx,AluSq,L1MD"				c1p105357827FS	TTTTCTCATGCAATACATATGAGC	c1p105357827ES	TAAATTTAAAAACCAAAGCAGGAC
chr1	151454901	151455063	153188277	153188439	-	13	162	2	L1PA4	COLO2N	0	0					c1p151454982FS	ATATTCTCCATGGAACTGTGAGTC	c1p151454982ES	AAAGATTTACTTTGAAAGAAGCCC
chr1	168343117	168343287	170076493	170076663	-	24	170	2	L1PA3	COLO2N	0	0	"L2c,L1PA3"				c1p168343202FS	GTAACTTGATATTTCCAATTGCTG	c1p168343202ES	GATAACTGGGTTAAGAAAATGTGG
chr1	235824803	235824904	237758180	237758281	-	10	101	2	noL1	COLO2N	0	0	(T)n		RYR2		c1p235824853FS	CAGCAAAAATCTCTAATGAAGAGC	c1p235824853ES	AACAAGTTGGAACCAAGTAAGAAC
chr1	240378248	240378449	242311625	242311826	+	851	201	9	noL1	COLO2N	0	0	L1ME1	LINE:Ewing	PLD5		c1p240378348FS	TCTATAGACAAAAATCAATGTTCCC	c1p240378348ES	TTTGGCTTTTATTTTCATTTTCTC
chr10	1340241	1340546	1350241	1350546	+	15	305	3	L1PA2	COLO2N	0	0	"L1MC1,L1PA2"		ADARB2		c10p1340393FS	ATACCAGTACCAAAACCCAGAAC	c10p1340393ES	TCATTCTCAGTAAACTATCGCAAG
chr10	21441762	21442027	21401756	21402021	+	14	265	3	L1PA6	COLO2N	0	0	GA-rich		NEBL		c10p21441894FS	TTCTACAGAATTAGGTCCTTTTGC	c10p21441894ES	AACACCACATGTTCTCACTCATAG
chr10	25843981	25844271	25803975	25804265	-	11	290	4	L1PA2	COLO2N	0	0	L1PB1		GPR158		c10p25844126FS	TTTTGTTTAAGGAGGCTAAAAATG	c10p25844126ES	ACACCGCATATTCTCACTCATAG
chr10	32988973	32989117	32948967	32949111	-	11	144	4	L1PA3	COLO2N	0	0	"L1PA3,L1MA6"		C10orf68		c10p32989045FS	CTGATCATTAGAGAAATGCAAATG	c10p32989045ES	GGCATTATTCACAATAGCAAAGAC
chr10	33073030	33073160	33033024	33033154	+	10	130	2	L1PA5	COLO2N	0	0	L1PA5		C10orf68		c10p33073095FS	AAATTGTGCATTAGAACAACAATG	c10p33073095ES	ACTGCTATAAAGACACATGCACAC
chr10	51976385	51976875	52306379	52306869	+	12	490	3	L1PA4	COLO2N	0	0	L1PA4		"SMS1,SGMS1"		c10p51976630FS	AAATTATTTTGGACACAAAACCAC	c10p51976630ES	AATAGCAAAGACTTGGAATCAATC
chr10	100565898	100566678	100575908	100576688	+	18	780	3	L1PA4	COLO2N	0	0	"(TTTG)n,L1MEg,L1PA4,AT_rich"		HPSE2		c10p100566288FS	TAAGATTACTTCAGGTCCTGCTTC	c10p100566288ES	TAATGCTAAATGACGAGTTAATGG
chr10	121494491	121494898	121504501	121504908	-	13	407	2	noL1	COLO2N	0	0	T-rich		INPP5F		c10p121494694FS	TGGTTAATATTTTGTAGAGGCAGG	c10p121494694ES	AACTAAGGAAACCTTACCCAAAAG
chr11	79389476	79389708	79711828	79712060	-	12	232	3	L1PA3	COLO2N	0	0	"Charlie17a,L1PA3"				c11p79389592FS	AATAAAGTGAGAGCTTGAAAGTGG	c11p79389592ES	TCATTCTCACTAAACTATCGCAAG
chr11	81760002	81760124	82082354	82082476	-	22	122	4	L1PA5	COLO2N	0	0	"L2b,L1PA5"		BC041900		c11p81760063FS	GCTAGAATAAGAGGTACGGTCAAG	c11p81760063ES	AGTCAATTCCAGGTACTAAGTTGC
chr11	87451978	87452141	87812330	87812493	+	13	163	2	noL1	COLO2N	0	0	L1ME1				c11p87452059FS	TATTTCCATGAGCAATGTCAGTAG	c11p87452059ES	CTTCGTGTTTGATATAGCAGTAGG
chr11	133254017	133254247	133748807	133749037	-	20	230	6	L1PA3	COLO2N	0	0	"L1P3,L1PA3,(TTA)n"				c11p133254132FS	ATTGTTTGGAATAGTTTCAGAAGG	c11p133254132ES	AACACCACATGTTCTCACTCATAG
chr13	40313978	40314313	41415978	41416313	+	16	335	4	L1PA6	COLO2N	0	0	"L1PA16,L1PA6"		SUGT1L1		c13p40314145FS	CAATCTTGGGAGATTCTATGTTTC	c13p40314145ES	GATGAGTTAATGTCCTTTGTAGGG
chr13	41902996	41903130	43004996	43005130	+	18	134	5	L1PA2	COLO2N	0	0	"L1PA2,L1ME2"				c13p41903063FS	GCTTATTTATTCTGCTAGTCGAGG	c13p41903063ES	CATCAAAAATGATGAGTTCATGTC
chr13	48079997	48080253	49181996	49182252	-	12	256	2	noL1	COLO2N	0	0	L1MA3				c13p48080125FS	AGAAGACTTTTTATTATGGCCTTG	c13p48080125ES	GTACAGACCAAATGGACCTAAGAG
chr13	69258730	69259459	70360729	70361458	+	16	729	2	noL1	COLO2N	0	0	L1PA4		KLHL1		c13p69259094FS	TTGTTTTTGTCAGGTTTATTGAAG	c13p69259094ES	ATAAGGGCTATCTATGACAAACCC
chr13	92131472	92131632	93333471	93333631	+	132	160	3	noL1	COLO2N	0	0			GPC5		c13p92131552FS	GTATGAAGAGATGAAAGCAGAACC	c13p92131552ES	AACTGCTTATTTATCTTTTGCACC
chr13	101998516	101998771	103200515	103200770	+	10	255	2	noL1	COLO2N	0	0	(A)n				c13p101998643FS	TTTAATTTCGGTTGAATAGAGAGC	c13p101998643ES	ATAGAAGAGCTATCTTTGCCATTC
chr14	28422293	28422521	29352542	29352770	-	15	228	3	L1PA3	COLO2N	0	0	L1PA3				c14p28422407FS	TAGAGTAATTGCTCCTAGGGTGTC	c14p28422407ES	TAATATGTGAAATACAGCTCCTGC
chr14	38179936	38180142	39110185	39110391	+	12	206	2	L1PA3	COLO2N	0	0	"L1PA3,L1PA13"				c14p38180039FS	GGTTGAACTAATTTACATTCCCAC	c14p38180039ES	TCATTCTCAGTAAACTATCGCAAG
chr14	84492239	84492366	85422486	85422613	+	12	127	3	L1HS	COLO2N	0	0	"L1HS,A-rich"				c14p84492302FS	AATATAACAATGGTTTCTGCTTCC	c14p84492302ES	TGAAAGATAAGAGTATCAAACCCC
chr14	85631803	85632314	86562050	86562561	-	72	511	2	noL1	COLO2N	0	0	"AluSg4,(TTTTA)n,L1PA3"				c14p85632058FS	TGAGATGGAGTCTCACTCTGTTG	c14p85632058ES	CGTATGTTTATTGTGGCATTATTC
chr15	24159744	24160451	26608651	26609358	+	16	707	4	noL1	COLO2N	0	0	AluY				c15p24160097FS	AGATTCCATGTTTGGTTATCTGAC	c15p24160097ES	CTTTGAACAGGAGAACACCTCTC
chr16	47973808	47973979	49416307	49416478	+	15	171	2	L1PA3	COLO2N	0	0	"LTR85b,L1PA3"		C16orf78		c16p47973893FS	AATTATTTAATCAGCTGGTATGGG	c16p47973893ES	TCATTCTCAGTAAACTATCGCAAG
chr17	64429058	64429225	66917463	66917630	+	11	167	3	L1PA4	COLO2N	0	0	L1PA4		ABCA8	"ABCA8.27,ABCA8.26,ABCA8.10"	c17p64429141FS	AAAATGTCACTTACCTCAAAGGAG	c17p64429141ES	CCCTCAATGATAGACTGGATTAAG
chr17	66333851	66334075	68822256	68822480	-	11	224	2	L1PA4	COLO2N	0	0	L1PA4				c17p66333963FS	AGAGGAACCAAGATAACACATCTC	c17p66333963ES	TACACAATAGCAAAAACTTGGAAC
chr18	7297781	7298040	7307781	7308040	-	12	259	2	L1PA2	COLO2N	0	0	L1PA2				c18p7297910FS	TCTTTTCATAGTCAAAACCACTTG	c18p7297910ES	TCATCATTCTCAGTAAACTATCGC
chr18	23789284	23789782	25535286	25535784	-	11	498	2	L1PA7	COLO2N	0	0	"AT_rich,A-rich,L1PA7,(T)n"		CDH2		c18p23789533FS	TCAAATTAGGGATAGCATTAGGAG	c18p23789533ES	CAGTGCGATCTTTTTAGAATTACC
chr19	12654129	12654552	12793129	12793552	-	23	423	2	noL1	COLO2N	0	0	"AluSp,AluSq"				c19p12654340FS	TTTGTATTTTTAGTAGAGACGGGG	c19p12654340ES	ATTAAAATAGGAATTTTGGCTGG
chr19	41599465	41599852	36907625	36908012	+	1467	387	2	noL1	COLO2N	0	0	"AluSz6,AluSp"		ZFP82		c19p41599658FS	GGGCCTTCTTTTAATTACTATGTG	c19p41599658ES	TGGTTAAGAATTCCTGTTCTATGG
chr2	48881671	48882012	49028167	49028508	-	93	341	4	noL1	COLO2N	0	0	AluSx1				c2p48881841FS	AATAATTCCAAATCTCTTCTCAAGG	c2p48881841ES	GAATCTACAGTTTCACAGCAAATG
chr2	61493475	61494616	61639971	61641112	+	158	1141	4	noL1	COLO2N	0	0	"AluSx,AluJo,AluSc"		USP34		c2p61494045FS	TATCTAGTAGAGACGGGGTTTCC	c2p61494045ES	AAGTGAGAGCAATAAATATGGAGG
chr2	66799002	66799215	66945498	66945711	-	16	213	4	L1PA2	COLO2N	0	0	L1PA2				c2p66799108FS	CAGCCCAAGTTATTTAGGTTTATC	c2p66799108ES	TCATTCTCAGTAAACTATCGCAAG
chr2	69522038	69522746	69668534	69669242	-	11	708	2	noL1	COLO2N	0	0	"AluJb,LTR49-int,L1PA2"				c2p69522392FS	GTGTTTCAAAATTGTGTGAGATTC	c2p69522392ES	CTGTAGTCACAGTTACTTGCTTGG
chr2	72500681	72500783	72647173	72647275	-	12	102	3	L1PA7	COLO2N	0	0	L1M4c		EXOC6B		c2p72500732FS	TCTCTTGCTACTTTCAAGGTTCTC	c2p72500732ES	TCATTCTCAGCAAACTAACACAAG
chr2	76521224	76521345	76667716	76667837	-	21	121	3	L1PA4	COLO2N	0	0	L1PA4				c2p76521284FS	GGAAAACCGTTAAGACAGAAATAC	c2p76521284ES	ATGATGAGTTCATGTCCTTTGTAG
chr2	107827705	107828153	108461273	108461721	-	20	448	2	noL1	COLO2N	0	0	"AluY,AluSc"		DKFZp686P0288		c2p107827929FS	AATTTATTTCCCCATCTGGTATAAG	c2p107827929ES	CTCTTATTCAGAGCATTGAGAGG
chr2	118610842	118611069	118894372	118894599	-	11	227	3	L1PA17	COLO2N	0	0	"L1PA2,L1PA17"				c2p118610955FS	TTTGTAGCCACTCAGTTTTCTATG	c2p118610955ES	TAGACTGGATTAAGAAAATGTGGC
chr2	126925163	126925403	127208693	127208933	-	17	240	3	L1PA3	COLO2N	0	0	L1M3				c2p126925283FS	GTATGGTTTGCAAATATTTTCTCC	c2p126925283ES	TCATTCTCAGTAAACTATCGCAAG
chr2	127967841	127967948	128251371	128251478	+	19	107	2	noL1	COLO2N	0	0			IWS1		c2p127967894FS	AGTAATGATGCCCTTTTTGAGTAG	c2p127967894ES	AATGAATGTTTCTTTAAGGTCCTG
chr2	132711718	132711941	132995248	132995471	-	79	223	2	L1PA3	COLO2N	0	0	ALR/Alpha		LOC554226		c2p132711829FS	AACTTATTTGTGATGTGTGCATTC	c2p132711829ES	AAATCCAAATGCTGTCCTAATATC
chr2	182310787	182311323	182602542	182603078	+	17	536	2	L1PA6	COLO2N	0	0	"L1PBb,L1PA6"				c2p182311055FS	TTATTAAACAGCTATGTGCTAGGC	c2p182311055ES	AGGGATAGCATTAGGAGAAATACC
chr2	186347416	186347546	186639171	186639301	-	43	130	2	L1PA2	COLO2N	0	0			FSIP2		c2p186347481FS	TAAATTTTCTGGGGTCTCTGTAAG	c2p186347481ES	TCATCATTCTCAGTAAACTATCGC
chr2	191516237	191516352	191807992	191808107	+	12	115	3	noL1	COLO2N	0	0	L2a		GLS		c2p191516294FS	TTATGGAGCATACTCACAGAAGAG	c2p191516294ES	ATCTTAGAAATCACGCCTATCAAC
chr20	41666497	41667082	42233083	42233668	+	22	585	2	noL1	COLO2N	0	0	"AluJb,AluSx1"		IFT52	IFT52.5	c20p41666789FS	ACTCCAAAATGATACATCTTCCTC	c20p41666789ES	ATGTTGAAAGCAGAAATATCTTGG
chr20	47679476	47680075	48246069	48246668	+	30	599	2	noL1	COLO2N	0	0	"L2a,(TG)n,L1M5"				c20p47679775FS	ACCTATATGCATGCTTAGGAAAAC	c20p47679775ES	GTGGTCTCAGCTACTCAGGAAG
chr21	20037023	20037326	21115152	21115455	+	17	303	2	L1PA3	COLO2N	0	0	"L1PA3,L1MC4a"				c21p20037174FS	CTGTTCTTACGGCTTTTAAAATTG	c21p20037174ES	AACTAGAAATACCATTTGACCCAG
chr21	41267353	41267832	42345483	42345962	+	12	479	2	noL1	COLO2N	0	0	"L1PA4,LTR68"				c21p41267592FS	GATTTAACAGACTCCAATTCAACC	c21p41267592ES	TAAATCATGCTGCTATGAAGACAC
chr3	1829046	1829171	1854046	1854171	+	12	125	2	L1PA3	COLO2N	0	0	L1PA3				c3p1829108FS	AAGATTAGTCGTAATACGGAGCTG	c3p1829108ES	TCACTCTGATGGTAGTTTCTTTTG
chr3	9437516	9438035	9462516	9463035	-	10	519	3	noL1	COLO2N	0	0	"MIR3,FLAM_C,MIRc"		"SETD5,KIAA1757"		c3p9437775FS	AGAGTTCATCTCTTTGTTTTCCAG	c3p9437775ES	TGGCAGCTGCATTATATACTTATC
chr3	25172983	25173123	25197979	25198119	+	357	140	2	noL1	COLO2N	0	0	(A)n				c3p25173053FS	CATTCCTAACTATTGTGTCACTGG	c3p25173053ES	AGAGTGCTGTTTGGTCTTCTGTAG
chr3	34785754	34785866	34810750	34810862	+	11	112	2	L1PA4	COLO2N	0	0	L1PA10				c3p34785810FS	TTCCACATGGTTGAATACATTTAC	c3p34785810ES	CAAATGTCCAACAATGATAGACTG
chr3	36628207	36628328	36653203	36653324	+	10	121	2	L1PA3	COLO2N	0	0	"L1PA3,L1P4"				c3p36628267FS	TGTCTCTAATTTCTTTCAGCAGTG	c3p36628267ES	AAACTAGGCATCAAAGGAACATAC
chr3	47832167	47832909	47857163	47857905	-	71	742	3	noL1	COLO2N	0	0	"Tigger9a,(A)n,AluY"		"DHX30,KIAA0890"	KIAA0890.L	c3p47832538FS	GTCTGATTTCTTACCTGTAATGCC	c3p47832538ES	ACTAAAAATACAAAAATTGGCAGG
chr3	48078950	48079089	48103946	48104085	+	11	139	2	noL1	COLO2N	0	0	"L1MC,L1MA5A,SVA_C"		"FKSG52,MAP4"		c3p48079019FS	TGAAGTGTCTGTTCAGATCTTTTG	c3p48079019ES	ATGCTGTTGATCTATGACCTTACC
chr3	57443822	57443945	57468782	57468905	+	14	123	4	L1PA4	COLO2N	0	0	"L1ME3B,L1PA4"				c3p57443883FS	GATATCTTATGTAGAAAAAGCCCG	c3p57443883ES	GTTTATTGCAGCACTATTCACAAC
chr3	70416617	70416910	70333927	70334220	-	32	293	2	L1PA13	COLO2N	0	0	"L1PA13,AT_rich,L1PA3"				c3p70416763FS	TCTCACTTTGAAGAATGACAAGAG	c3p70416763ES	CTGATGAGTTCATGTCCTTTGTAG
chr3	85290692	85290874	85208002	85208184	+	16	182	3	L1PA3	COLO2N	0	0	"L1PA3,AT_rich"		CADM2		c3p85290783FS	CACCATCTTTAAACTCGTTCTCTC	c3p85290783ES	GTACATCATGGAATACTATGCAGC
chr3	104343860	104344031	102861170	102861341	+	14	171	3	L1PA6	COLO2N	0	0	"LTR41,L1PA6"				c3p104343945FS	AGACAGAAAGGATTGAACAAACTC	c3p104343945ES	CATGGTGAAACCCTGTCTCTAC
chr3	106794127	106794477	105311437	105311787	+	11	350	2	L1HS	COLO2N	0	0	"GA-rich,Kanga1b,AluY"				c3p106794302FS	ACAATGATTTCGAGAGATTCTACC	c3p106794302ES	AGCCTGTAATCCCAGAACTTTAG
chr3	122399979	122400171	120917289	120917481	-	10	192	2	noL1	COLO2N	0	0	L1PA8		STXBP5L		c3p122400075FS	TTGATTGAAGTAATTTACACTGCC	c3p122400075ES	GGTAAGACACTCCTAAGCAAAAAG
chr3	127083538	127083647	125600848	125600957	-	13	109	2	noL1	COLO2N	0	0	AluSz				c3p127083592FS	ATGACTTGGATGAATCTTCTCTTC	c3p127083592ES	ACATAGTGAGACCCCGTTTCTAC
chr3	155201262	155201580	153718572	153718890	+	14	318	2	L1PA3	COLO2N	0	0					c3p155201421FS	TAATAAGAAATTTGGTCCAGTTCC	c3p155201421ES	CTGTATGTTCTCACTCATAGGTGG
chr3	190217623	190217754	188734929	188735060	-	10	131	3	L1PA3	COLO2N	0	0	"L1PA11,L1PA3,AT_rich"		TPRG1		c3p190217688FS	GATCTGGTTTTATGAAAGTGTGTG	c3p190217688ES	CAAATGTCCAACAATGATAGACTG
chr4	18303940	18304345	18694842	18695247	-	11	405	2	L1PA5	COLO2N	0	0	"L2b,L1PA5"				c4p18304142FS	TTCACTTAAGGACATGATTTTGG	c4p18304142ES	GTCAGAATGAAAGGATAAAGGATG
chr4	19344854	19344964	19735756	19735866	+	10	110	2	L1PA4	COLO2N	0	0	L1PA4				c4p19344909FS	TGGTGATAAAAAGTGAGTGTCAAG	c4p19344909ES	CAAATGTCCAACAATGATAGACTG
chr4	21645301	21645543	22036203	22036445	-	71	242	3	L1PA6	COLO2N	0	0					c4p21645422FS	GACAAGAGAAAAGAGGTCAAAAAC	c4p21645422ES	AACACCACATGTTCTCACTCATAG
chr4	26267717	26267853	26658619	26658755	-	11	136	3	L1PA7	COLO2N	0	0	"(TTC)n,L1PA7"		TBC1D19		c4p26267785FS	TTTAGTAGCAATGGAGTCTCACG	c4p26267785ES	ACATGCACATGTATGTTTACTGAG
chr4	65574184	65574565	65891589	65891970	-	12	381	3	L1PA4	COLO2N	0	0	"L1PA4,L1PA16"				c4p65574374FS	TACTTTCTCCTGCTCCAAAGTATC	c4p65574374ES	TCGAGGATCTAGAACTGGAAATAC
chr4	85430644	85430745	85211620	85211721	+	24	101	2	noL1	COLO2N	0	0	L1PA7		AK095285		c4p85430694FS	CTGATGATAGTTTCTTTTGCTGTG	c4p85430694ES	CCTAACTTATTTTATGAAGCCAGC
chr4	149885237	149885372	149665787	149665922	-	37	135	2	L1PA3	COLO2N	0	0	L1PA3				c4p149885304FS	TTCTTAGTGGAAAGGTTAAATTGG	c4p149885304ES	CAAATGTCCAACAATGATAGACTG
chr4	165135145	165135296	164915695	164915846	+	14	151	3	L1PA4	COLO2N	0	0	L1PA4		1-Mar		c4p165135220FS	AAATAGAAAATCACAGTTTGAGGG	c4p165135220ES	TTCAGAAAATGTAAAGCAGTCATC
chr4	179055142	179055426	178818148	178818432	+	10	284	2	L1PA4	COLO2N	0	0	Tigger1		LOC285501		c4p179055284FS	GTCATAATCTTTTACTGGTGGAGG	c4p179055284ES	AACACCACATGTTCTCACTCATAG
chr4	188214519	188214975	187977525	187977981	+	21	456	4	L1PA3	COLO2N	0	0	"L1PA3,(CAAAA)n"				c4p188214747FS	CGATGAATACGATTCTGTTAGTTG	c4p188214747ES	AACTAGAAATACCATTTGACCCAG
chr5	16381828	16382514	16328828	16329514	-	12	686	5	noL1	COLO2N	0	0	"AluSc8,L1MC1,AluSx1"				c5p16382171FS	TTTACATCTAGGCATATGCTGTTC	c5p16382171ES	AAAAACAAAAATAAACCAAGAAAAC
chr5	41382581	41382748	41346824	41346991	-	13	167	2	noL1	COLO2N	0	0	L1MC2		PLCXD3		c5p41382664FS	TACATTAGGGTTCACTCTGTGTTG	c5p41382664ES	TTGACATTTTAATTTGGAAAATCC
chr5	62919506	62919908	62883750	62884152	+	16	402	2	L1PA3	COLO2N	0	0	"LTR67B,L1PA3"				c5p62919707FS	TTTGTAGTTTTAGTAGAGACGGGG	c5p62919707ES	TCATTCTCAGTAAACTATCGCAAG
chr5	97258289	97258598	97232533	97232842	-	10	309	3	L1PA4	COLO2N	0	0	"L1MCb,L1MC3"				c5p97258443FS	ATTTGCCTCTTTTGTCATTTTAAC	c5p97258443ES	AACACCACATGTTCTCACTCATAG
chr5	100419277	100419385	100391378	100391486	-	11	108	2	L1PA4	COLO2N	0	0	"L1PA4,L1MD"				c5p100419331FS	AGTGAGAAAGGACATCCTAAATTG	c5p100419331ES	ACAGACTGGATTAAGAAAATGTGG
chr5	130602049	130602794	130574150	130574895	+	53	745	2	L1PA8	COLO2N	0	0	"L1PA8,AluSg,AluY,L1MC4a,AT_rich"				c5p130602421FS	AGTAGCTGGAATTACATGCATAAG	c5p130602421ES	CAGAGCTTACAGTGAGCCAAG
chr5	162164247	162164724	162231669	162232146	+	14	477	3	L1PA4	COLO2N	0	0	"AT_rich,L1PA4"	"Alu:dbRIP,Hormozdiari,Stewart"			c5p162164485FS	TCAAAGACAGAGATATTGAACAGC	c5p162164485ES	AACAATTATTTTAACTGCTCTCCC
chr5	178848486	178848806	178915880	178916200	+	131	320	3	noL1	COLO2N	0	0					c5p178848646FS	CTTTCTTCTCTGGACCAAGTATTC	c5p178848646ES	AATAGATGGGTTGTGGAAACTG
chr6	62439599	62439723	62381640	62381764	-	52	124	3	L1PA3	COLO2N	0	0	L1PA3				c6p62439661FS	TGGGTATAAAGAAAGATAAGCCAG	c6p62439661ES	CAAATGTCCAACAATGATAGACTG
chr6	65303558	65303677	65246837	65246956	-	12	119	4	L1PA2	COLO2N	0	0	L1PA2				c6p65303617FS	CATTTTAAAAGTCTACCCTTTTTCC	c6p65303617ES	TAGACTGGATTAAGAAAATGTGGC
chr6	68255707	68256010	68198986	68199289	+	11	303	4	L1PA5	COLO2N	0	0	"L1MCc,L1PA5"				c6p68255858FS	TTATCTCTGTTTGTTCTCTCTCCC	c6p68255858ES	AGGATGAGTTCATGTCCTTTGTAG
chr6	73436340	73436834	73379619	73380113	-	10	494	2	noL1	COLO2N	0	0	MLT1A-int		KCNQ5		c6p73436587FS	GTCTCTGCTGGTGTAATCCTACTC	c6p73436587ES	CTGTGAGAAAATAAATTCATGTCG
chr6	75766437	75766580	75709717	75709860	+	12	143	3	L1PA4	COLO2N	0	0	"L1MEg,L1PA4"				c6p75766508FS	TTATTTTTGCTTGTTTCCTTTTTC	c6p75766508ES	ATGATGAGTTCATGTCCTTTGTAG
chr6	78466626	78466781	78409907	78410062	-	10	155	2	noL1	COLO2N	0	0	L1PA4				c6p78466703FS	TTAGTTTTCCTTCTACCATTCAGG	c6p78466703ES	ATGCTGTAGAAAAAGCATATCAGG
chr6	81303254	81303574	81246535	81246855	-	13	320	2	noL1	COLO2N	0	0	L1MC4				c6p81303414FS	TTTTATTTTTAAACCAAGACGAGC	c6p81303414ES	AGAGACATAGTGGCAAAAGTATCC
chr6	86386378	86386898	86329659	86330179	+	25	520	3	noL1	COLO2N	0	0	"L1MC1,AluSx"		SYNCRIP		c6p86386638FS	TGTATAACCGTGTTTCCATCATAG	c6p86386638ES	CAAAATCCAACACACTATAAATGC
chr6	156782959	156783059	156741267	156741367	+	23	100	2	noL1	COLO2N	0	0	AT_rich				c6p156783009FS	TTCTTAGGAAGTAGCTGGTCTGTC	c6p156783009ES	TCTGGAAAATCCTTCTCATCTAAC
chr7	61738415	61738987	62100980	62101552	+	11	572	2	noL1	COLO2N	0	0	L1PA4				c7p61738701FS	GAGACTTTGCTTAATTTGGCTATC	c7p61738701ES	GCAAAAATTAATAGCATACCAACC
chr7	62131278	62131389	62493843	62493954	+	133	111	3	noL1	COLO2N	0	0	"AluJb,AluSx"				c7p62131333FS	TTTTATTTTCCTGTCTTTTTCCTG	c7p62131333ES	CAAAAACTGCAATTACTTTCACAC
chr7	97329581	97329683	97491645	97491747	+	14	102	3	L1PA5	COLO2N	0	0	L1MC2		ASNS		c7p97329632FS	GAAATATTTGTTCAGATCCTTTGC	c7p97329632ES	TTCATTTTGATTGCTCATTTTAAG
chr7	130032973	130033074	130382433	130382534	+	120	101	2	noL1	COLO2N	0	0	AluSz				c7p130033023FS	TTTTCATGTTAGAGAGGAAAATGC	c7p130033023ES	ATTTTTGTAGAGTCGGAGTTTCAC
chr8	48195072	48195304	48075907	48076139	+	10	232	3	L1PA3	COLO2N	0	0	L1PA6				c8p48195188FS	TTTTGGAGAAATATCTATTCAGGG	c8p48195188ES	ATACACCATGGAATACTATGCAGC
chr8	52672430	52672753	52509877	52510200	-	24	323	3	L1PA16	COLO2N	0	0	L1PA16		PXDNL		c8p52672591FS	TGTTTGTACACAGTGAAAGGTAGG	c8p52672591ES	GCTAGAAATACAAAATTAGCCAGG
chr8	59178067	59178277	59015513	59015723	-	14	210	2	L1PA3	COLO2N	0	0	(A)n		FAM110B		c8p59178172FS	CTGGTATGTCTATTGCTTTTGTTG	c8p59178172ES	TCATTCTCAGTAAACTATCGCAAG
chr8	88495843	88496223	88426727	88427107	+	14	380	2	L1PA4	COLO2N	0	0	L1PA4				c8p88496033FS	CTAATGCCACATACACTAAAGCAG	c8p88496033ES	AACACCACATGTTCTCACTCATAG
chr8	103220373	103220506	103151197	103151330	+	322	133	2	L1PA3	COLO2N	0	0	MLT2B3				c8p103220439FS	AGCTGATAAAGTATTGTTTCTGGG	c8p103220439ES	GATGAGTTCATATCCTTTGTAGGG
chr8	127859373	127859478	127790191	127790296	+	18	105	3	L1PA2	COLO2N	0	0	L1MEg				c8p127859425FS	TAGAGTCTCACTCTGTTACCCAGG	c8p127859425ES	TCATTCTCAGTAAACTATCGCAAG
chr9	3136897	3137119	3146897	3147119	-	17	222	3	L1PA2	COLO2N	0	0	"L1PA2,L1PA7"				c9p3137008FS	TCAATCTCTGATATCCTTTCTTCC	c9p3137008ES	CAAATGTCCAACAATGATAGACTG
chr9	82325864	82326458	83136044	83136638	-	29	594	2	noL1	COLO2N	0	0	AT_rich				c9p82326161FS	AGTTGCTGCTTCTAGTCTCAAATC	c9p82326161ES	GAAAATTGGATAGGAAGTCTTCTG
chr9	92643406	92643580	93603585	93603759	+	143	174	6	noL1	COLO2N	0	0	(TG)n		SYK		c9p92643493FS	CACACATAACACACTACACACACC	c9p92643493ES	TTTATAGCCCCTTGTAGGATAGTG
chrX	11858116	11858278	11948195	11948357	+	15	162	2	noL1	COLO2N	0	0	"L2b,AluSx"				cXp11858197FS	CAAGATGTCTATAAGGTTGCACTG	cXp11858197ES	ATTGAGAAGGTTGTATGAAAGAGG
chrX	57733535	57734119	57716810	57717394	-	13	584	2	L1PA4	COLO2N	0	0	"L1M2,L1MCa,L1PA4"				cXp57733827FS	AATGCTAAATGATGAGTTAATGGG	cXp57733827ES	TAGATACAGAAAAAGCATTTGACG
chrX	61791240	61791688	61874515	61874963	-	83	448	2	noL1	COLO2N	0	0	ALR/Alpha				cXp61791464FS	CAAGTACATATTTTGATCGCTTTG	cXp61791464ES	TTATGTGAAGATATTCCCTTTTCC
chrX	71617605	71617738	71700880	71701013	+	12	133	2	L1PA8	COLO2N	0	0	"THE1C,L1PA8"		HDAC8		cXp71617671FS	TAGAAATTTGCATGTGAGAACAAG	cXp71617671ES	ATTTACAATAGCAGACTTGGAACC
chrX	104861918	104862299	104975262	104975643	+	15	381	3	noL1	COLO2N	0	0	L1MA4A		IL1RAPL2		cXp104862108FS	ATATTTCAAGTCCTCACTTTCAGC	cXp104862108ES	ACAAAGGATCAACAAAATGAAAAG
chrX	106500001	106500310	106613345	106613654	+	16	309	3	L1PA2	COLO2N	0	0	"(TAAA)n,L1PA2"				cXp106500155FS	TCCTAGATTGTGTTCCTACCTCTC	cXp106500155ES	AGAACTACAAATACCATTTGACCC
chrX	111066023	111066264	111179367	111179608	-	14	241	4	L1PA3	COLO2N	0	0	"L1PA3,L1MA3"		TRPC5		cXp111066143FS	CACTGGTCTCTGTCTGTTTTTATG	cXp111066143ES	TCATTCTCAGTAAACTATCGCAAG
chrY	16272334	16272435	17762940	17763041	-	34	101	4	L1PA5	COLO2N	0	0	L1PA5				cYp16272384FS	CTCATGGATTCTCTCTCTTCTTTC	cYp16272384ES	GAAGATCTCATTACTCCATTTTGG